Query 005770
Match_columns 678
No_of_seqs 693 out of 4760
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 13:31:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02927 antheraxanthin epoxid 100.0 3E-84 6.5E-89 716.7 64.0 660 1-678 1-668 (668)
2 PRK06126 hypothetical protein; 100.0 1.1E-46 2.5E-51 423.9 38.6 483 74-595 4-527 (545)
3 PRK06184 hypothetical protein; 100.0 2.7E-43 5.9E-48 392.3 40.6 408 75-552 1-424 (502)
4 PRK06183 mhpA 3-(3-hydroxyphen 100.0 1.4E-43 3.1E-48 397.3 35.7 424 75-552 8-448 (538)
5 PRK08132 FAD-dependent oxidore 100.0 6.5E-43 1.4E-47 393.0 39.1 427 75-552 21-463 (547)
6 PRK08244 hypothetical protein; 100.0 4E-43 8.7E-48 390.3 35.2 417 77-553 2-430 (493)
7 PRK07190 hypothetical protein; 100.0 6.9E-42 1.5E-46 376.2 40.0 404 75-553 3-419 (487)
8 PRK08294 phenol 2-monooxygenas 100.0 7.9E-42 1.7E-46 386.1 38.7 429 75-553 30-504 (634)
9 PRK06834 hypothetical protein; 100.0 4E-42 8.7E-47 378.6 35.3 407 75-552 1-418 (488)
10 PRK08013 oxidoreductase; Provi 100.0 3.5E-42 7.7E-47 372.8 30.9 378 76-481 2-391 (400)
11 PRK06617 2-octaprenyl-6-methox 100.0 4.3E-42 9.3E-47 368.7 28.9 363 78-481 2-372 (374)
12 COG0654 UbiH 2-polyprenyl-6-me 100.0 6.6E-42 1.4E-46 368.6 30.0 362 77-470 2-371 (387)
13 PRK06753 hypothetical protein; 100.0 1.7E-40 3.7E-45 357.2 38.0 354 78-465 1-354 (373)
14 PRK08850 2-octaprenyl-6-methox 100.0 7.7E-41 1.7E-45 363.3 33.4 377 75-481 2-391 (405)
15 PRK08849 2-octaprenyl-3-methyl 100.0 1.7E-40 3.7E-45 357.8 31.6 371 76-481 2-383 (384)
16 TIGR01989 COQ6 Ubiquinone bios 100.0 2.5E-40 5.4E-45 361.9 33.4 372 78-471 1-430 (437)
17 PRK07588 hypothetical protein; 100.0 6.5E-40 1.4E-44 354.6 34.8 364 78-468 1-368 (391)
18 PRK06475 salicylate hydroxylas 100.0 4.8E-39 1E-43 348.5 38.2 336 78-436 3-354 (400)
19 PRK08773 2-octaprenyl-3-methyl 100.0 1.2E-39 2.7E-44 352.5 33.3 381 73-481 2-391 (392)
20 PRK07045 putative monooxygenas 100.0 5.7E-39 1.2E-43 346.9 36.6 342 75-437 3-353 (388)
21 PRK05714 2-octaprenyl-3-methyl 100.0 1.8E-39 3.9E-44 352.8 32.7 376 77-481 2-394 (405)
22 PRK06185 hypothetical protein; 100.0 4.6E-39 9.9E-44 350.1 35.1 374 74-477 3-389 (407)
23 PRK08163 salicylate hydroxylas 100.0 3.7E-38 8E-43 341.8 38.5 343 76-439 3-353 (396)
24 PRK07236 hypothetical protein; 100.0 3.6E-38 7.9E-43 340.1 36.6 335 74-439 3-372 (386)
25 TIGR03219 salicylate_mono sali 100.0 4.1E-38 8.9E-43 342.9 36.6 341 78-439 1-370 (414)
26 PRK08020 ubiF 2-octaprenyl-3-m 100.0 6.7E-39 1.5E-43 346.9 29.3 378 75-481 3-390 (391)
27 PRK07538 hypothetical protein; 100.0 1E-37 2.2E-42 339.5 38.1 336 78-437 1-361 (413)
28 PRK07494 2-octaprenyl-6-methox 100.0 9.9E-39 2.2E-43 345.2 29.9 374 73-481 3-386 (388)
29 PRK07364 2-octaprenyl-6-methox 100.0 3.8E-38 8.2E-43 343.9 32.4 376 75-481 16-403 (415)
30 PRK05868 hypothetical protein; 100.0 2.1E-37 4.6E-42 331.3 36.4 335 78-435 2-345 (372)
31 PRK06996 hypothetical protein; 100.0 3.6E-38 7.9E-43 341.2 29.6 366 73-480 7-393 (398)
32 PRK07333 2-octaprenyl-6-methox 100.0 8.9E-38 1.9E-42 339.7 31.7 374 78-481 2-389 (403)
33 PRK06847 hypothetical protein; 100.0 1.1E-36 2.4E-41 327.8 37.8 341 76-439 3-348 (375)
34 PRK09126 hypothetical protein; 100.0 2.9E-37 6.2E-42 334.4 29.8 368 76-471 2-377 (392)
35 PF01494 FAD_binding_3: FAD bi 100.0 2E-37 4.2E-42 330.9 26.5 341 77-434 1-355 (356)
36 TIGR01984 UbiH 2-polyprenyl-6- 100.0 5.4E-37 1.2E-41 331.1 28.9 358 79-470 1-369 (382)
37 PRK08243 4-hydroxybenzoate 3-m 100.0 4.3E-36 9.3E-41 324.5 34.1 337 77-439 2-347 (392)
38 KOG2614 Kynurenine 3-monooxyge 100.0 2.5E-36 5.4E-41 306.0 29.0 336 77-427 2-360 (420)
39 PRK07608 ubiquinone biosynthes 100.0 1.8E-36 3.9E-41 327.7 29.9 374 77-479 5-386 (388)
40 TIGR01988 Ubi-OHases Ubiquinon 100.0 4E-36 8.6E-41 324.8 31.3 361 79-468 1-370 (385)
41 PRK05732 2-octaprenyl-6-methox 100.0 5.2E-36 1.1E-40 325.0 30.9 367 75-471 1-379 (395)
42 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 3.4E-35 7.4E-40 316.6 35.5 337 77-440 2-348 (390)
43 PLN02985 squalene monooxygenas 100.0 1.7E-33 3.7E-38 310.7 35.9 340 74-437 40-396 (514)
44 PTZ00367 squalene epoxidase; P 100.0 2.7E-33 5.8E-38 310.2 36.9 339 75-437 31-416 (567)
45 KOG3855 Monooxygenase involved 100.0 1.9E-28 4E-33 246.3 21.7 386 74-479 33-477 (481)
46 PLN00093 geranylgeranyl diphos 100.0 2.6E-26 5.6E-31 249.9 35.6 316 74-429 36-371 (450)
47 PRK08255 salicylyl-CoA 5-hydro 100.0 1.4E-27 3.1E-32 276.4 26.5 315 78-437 1-334 (765)
48 TIGR02032 GG-red-SF geranylger 100.0 7.8E-27 1.7E-31 242.5 29.4 288 78-397 1-295 (295)
49 TIGR02023 BchP-ChlP geranylger 100.0 3E-26 6.5E-31 247.3 33.3 307 78-430 1-323 (388)
50 PRK11445 putative oxidoreducta 100.0 1.2E-26 2.7E-31 246.6 26.3 307 78-428 2-317 (351)
51 TIGR02028 ChlP geranylgeranyl 99.9 1.3E-24 2.8E-29 234.5 33.0 311 78-428 1-331 (398)
52 COG0644 FixC Dehydrogenases (f 99.9 2.6E-23 5.7E-28 224.5 33.2 316 76-429 2-326 (396)
53 PRK10157 putative oxidoreducta 99.9 3.4E-23 7.4E-28 225.5 31.4 326 76-428 4-356 (428)
54 PRK10015 oxidoreductase; Provi 99.9 2.8E-23 6.1E-28 225.8 25.7 329 76-427 4-355 (429)
55 KOG1298 Squalene monooxygenase 99.9 1.1E-21 2.5E-26 195.3 25.4 344 73-435 41-394 (509)
56 TIGR01790 carotene-cycl lycope 99.9 1.2E-21 2.6E-26 211.9 27.8 306 79-429 1-320 (388)
57 PLN02463 lycopene beta cyclase 99.9 1.1E-19 2.3E-24 197.0 27.2 315 73-427 24-363 (447)
58 TIGR01789 lycopene_cycl lycope 99.8 2E-19 4.4E-24 191.6 25.6 298 79-430 1-309 (370)
59 PLN02697 lycopene epsilon cycl 99.8 1.2E-18 2.5E-23 191.6 29.5 314 75-429 106-441 (529)
60 PF04820 Trp_halogenase: Trypt 99.8 2.6E-18 5.5E-23 187.5 26.9 321 79-434 1-377 (454)
61 PF05834 Lycopene_cycl: Lycope 99.7 9.4E-16 2E-20 164.3 24.6 280 79-399 1-290 (374)
62 PF08491 SE: Squalene epoxidas 99.7 2.6E-15 5.7E-20 148.0 19.7 196 232-435 1-198 (276)
63 PF00498 FHA: FHA domain; Int 99.7 3.1E-16 6.6E-21 124.3 8.4 67 570-646 1-68 (68)
64 cd00060 FHA Forkhead associate 99.3 2.2E-11 4.7E-16 104.9 11.7 78 568-656 22-101 (102)
65 TIGR03354 VI_FHA type VI secre 99.3 1.4E-11 3.1E-16 130.6 11.7 78 566-655 22-103 (396)
66 PRK04176 ribulose-1,5-biphosph 99.3 4.1E-11 8.8E-16 120.9 13.2 137 75-250 23-179 (257)
67 TIGR00292 thiazole biosynthesi 99.2 1.6E-10 3.4E-15 116.3 13.5 136 76-250 20-176 (254)
68 PRK01747 mnmC bifunctional tRN 99.2 4.4E-09 9.6E-14 121.4 26.0 61 185-245 403-464 (662)
69 COG2081 Predicted flavoprotein 99.2 8.7E-11 1.9E-15 120.5 9.4 160 75-245 1-168 (408)
70 COG1716 FOG: FHA domain [Signa 99.2 1.3E-10 2.8E-15 112.5 9.8 80 567-658 88-167 (191)
71 PRK11259 solA N-methyltryptoph 99.1 9.5E-09 2.1E-13 110.7 22.6 59 186-245 145-205 (376)
72 TIGR01377 soxA_mon sarcosine o 99.1 1.5E-08 3.3E-13 109.3 22.7 65 185-250 140-207 (380)
73 KOG1882 Transcriptional regula 99.1 1.6E-10 3.5E-15 108.0 6.0 93 543-648 173-278 (293)
74 PF01946 Thi4: Thi4 family; PD 99.1 2.8E-09 6E-14 101.0 14.3 138 76-250 16-171 (230)
75 PRK12409 D-amino acid dehydrog 99.0 6.1E-08 1.3E-12 105.7 25.9 59 187-245 194-259 (410)
76 smart00240 FHA Forkhead associ 99.0 3.4E-10 7.3E-15 84.3 5.0 48 570-622 1-50 (52)
77 COG1635 THI4 Ribulose 1,5-bisp 99.0 4.5E-09 9.8E-14 98.7 12.7 136 76-250 29-184 (262)
78 PF01266 DAO: FAD dependent ox 99.0 4.7E-09 1E-13 111.8 14.3 62 184-246 141-205 (358)
79 COG3456 Predicted component of 99.0 1.7E-09 3.8E-14 110.5 8.7 80 566-659 24-106 (430)
80 PF03486 HI0933_like: HI0933-l 99.0 3E-09 6.5E-14 114.1 11.0 143 78-245 1-167 (409)
81 PRK05192 tRNA uridine 5-carbox 98.9 1.7E-08 3.7E-13 111.7 16.5 150 75-244 2-157 (618)
82 PRK11728 hydroxyglutarate oxid 98.9 1.7E-08 3.6E-13 109.4 16.2 66 184-250 143-211 (393)
83 PRK13369 glycerol-3-phosphate 98.9 1.6E-07 3.5E-12 104.9 23.6 173 74-250 3-222 (502)
84 KOG2415 Electron transfer flav 98.9 1.8E-07 3.9E-12 95.5 20.6 325 75-427 74-445 (621)
85 PRK12266 glpD glycerol-3-phosp 98.9 1.8E-07 4E-12 104.3 23.0 60 186-245 151-217 (508)
86 PF13738 Pyr_redox_3: Pyridine 98.9 6.8E-09 1.5E-13 101.4 10.3 136 81-247 1-141 (203)
87 PRK00711 D-amino acid dehydrog 98.9 5E-07 1.1E-11 98.7 25.3 59 186-245 197-258 (416)
88 TIGR01373 soxB sarcosine oxida 98.9 3E-07 6.6E-12 100.2 22.3 39 73-111 26-66 (407)
89 PF01134 GIDA: Glucose inhibit 98.8 1E-07 2.3E-12 100.1 15.2 143 79-242 1-150 (392)
90 COG0579 Predicted dehydrogenas 98.8 1.3E-07 2.7E-12 100.7 15.3 175 75-250 1-218 (429)
91 KOG1881 Anion exchanger adapto 98.7 6.9E-09 1.5E-13 112.0 3.2 82 567-659 176-268 (793)
92 PLN02172 flavin-containing mon 98.7 1.2E-07 2.6E-12 103.9 12.7 147 75-245 8-174 (461)
93 PF12831 FAD_oxidored: FAD dep 98.7 3.4E-08 7.4E-13 107.9 7.5 146 79-247 1-153 (428)
94 COG3380 Predicted NAD/FAD-depe 98.7 1.7E-07 3.6E-12 91.0 11.0 143 78-239 2-155 (331)
95 PRK05257 malate:quinone oxidor 98.7 5.5E-07 1.2E-11 99.6 16.8 69 183-251 176-254 (494)
96 TIGR03329 Phn_aa_oxid putative 98.6 8.7E-07 1.9E-11 98.0 17.8 59 185-245 178-238 (460)
97 PRK13339 malate:quinone oxidor 98.6 5.7E-07 1.2E-11 98.8 14.5 68 184-251 178-255 (497)
98 TIGR03364 HpnW_proposed FAD de 98.6 5.6E-07 1.2E-11 96.5 14.0 56 185-245 140-198 (365)
99 TIGR00275 flavoprotein, HI0933 98.6 3.9E-07 8.6E-12 98.6 12.7 152 81-244 1-160 (400)
100 TIGR01292 TRX_reduct thioredox 98.6 3.6E-07 7.9E-12 95.0 11.7 110 78-244 1-112 (300)
101 PLN02464 glycerol-3-phosphate 98.6 6.1E-06 1.3E-10 94.2 22.0 66 185-250 227-303 (627)
102 COG0665 DadA Glycine/D-amino a 98.6 3.6E-06 7.7E-11 91.0 19.2 63 185-248 151-216 (387)
103 PRK15317 alkyl hydroperoxide r 98.5 5.2E-07 1.1E-11 101.1 12.8 112 75-244 209-322 (517)
104 COG2072 TrkA Predicted flavopr 98.5 7.4E-07 1.6E-11 97.4 13.5 136 73-244 4-144 (443)
105 KOG1399 Flavin-containing mono 98.5 3E-07 6.5E-12 99.1 10.0 140 75-243 4-152 (448)
106 TIGR01320 mal_quin_oxido malat 98.5 9E-07 2E-11 97.8 13.7 68 184-251 172-248 (483)
107 PRK11101 glpA sn-glycerol-3-ph 98.5 9.2E-07 2E-11 99.6 13.7 64 185-248 144-216 (546)
108 PTZ00383 malate:quinone oxidor 98.5 1.7E-06 3.6E-11 95.5 15.3 65 185-250 206-280 (497)
109 TIGR00562 proto_IX_ox protopor 98.5 1.4E-05 3.1E-10 88.6 23.0 46 198-243 233-278 (462)
110 PRK07804 L-aspartate oxidase; 98.5 3.8E-06 8.3E-11 94.5 18.5 37 75-111 14-50 (541)
111 PF00743 FMO-like: Flavin-bind 98.5 5.6E-07 1.2E-11 100.1 11.3 133 78-245 2-151 (531)
112 PRK12416 protoporphyrinogen ox 98.5 3.6E-06 7.8E-11 93.3 17.0 50 192-241 228-277 (463)
113 PLN02661 Putative thiazole syn 98.5 3.1E-06 6.8E-11 87.8 15.1 38 74-111 89-127 (357)
114 TIGR00551 nadB L-aspartate oxi 98.5 4.8E-06 1E-10 92.7 17.8 59 190-248 128-193 (488)
115 PRK11883 protoporphyrinogen ox 98.5 2.5E-05 5.5E-10 86.3 23.2 51 194-244 225-275 (451)
116 TIGR03140 AhpF alkyl hydropero 98.4 1.2E-06 2.5E-11 98.2 12.2 112 75-244 210-323 (515)
117 PRK06481 fumarate reductase fl 98.4 6.9E-06 1.5E-10 91.8 17.9 37 75-111 59-95 (506)
118 KOG1880 Nuclear inhibitor of p 98.4 1.6E-07 3.6E-12 91.2 4.2 85 564-658 34-120 (337)
119 PRK09231 fumarate reductase fl 98.4 3.3E-06 7.3E-11 95.7 15.5 58 190-247 133-199 (582)
120 TIGR00136 gidA glucose-inhibit 98.4 3.3E-06 7.1E-11 93.6 14.4 147 78-244 1-154 (617)
121 PRK05335 tRNA (uracil-5-)-meth 98.4 1.5E-06 3.3E-11 92.3 11.2 114 78-215 3-126 (436)
122 COG0492 TrxB Thioredoxin reduc 98.4 3.1E-06 6.6E-11 87.3 12.7 114 75-246 1-117 (305)
123 PRK08274 tricarballylate dehyd 98.4 3.7E-06 8E-11 93.3 14.4 37 75-111 2-38 (466)
124 TIGR01176 fum_red_Fp fumarate 98.4 8.5E-06 1.8E-10 92.2 17.2 57 190-246 132-197 (580)
125 TIGR01813 flavo_cyto_c flavocy 98.4 4.7E-06 1E-10 91.8 14.7 33 79-111 1-34 (439)
126 TIGR01812 sdhA_frdA_Gneg succi 98.4 8.3E-06 1.8E-10 92.7 16.9 33 79-111 1-33 (566)
127 COG0578 GlpA Glycerol-3-phosph 98.3 3.8E-05 8.1E-10 83.8 19.4 173 75-250 10-232 (532)
128 PRK06069 sdhA succinate dehydr 98.3 1.3E-05 2.9E-10 91.0 16.6 37 75-111 3-42 (577)
129 PF00070 Pyr_redox: Pyridine n 98.3 1.3E-05 2.9E-10 65.3 11.3 33 79-111 1-33 (80)
130 PRK08401 L-aspartate oxidase; 98.3 1.8E-05 3.9E-10 87.5 15.9 33 78-110 2-34 (466)
131 PLN02568 polyamine oxidase 98.3 1.6E-05 3.5E-10 88.9 15.3 52 191-242 243-294 (539)
132 PRK06175 L-aspartate oxidase; 98.2 2.2E-05 4.8E-10 85.9 16.1 35 76-111 3-37 (433)
133 TIGR03143 AhpF_homolog putativ 98.2 9.8E-06 2.1E-10 91.6 13.7 34 76-109 3-36 (555)
134 PRK05945 sdhA succinate dehydr 98.2 2E-06 4.3E-11 97.6 8.0 36 76-111 2-39 (575)
135 PRK07121 hypothetical protein; 98.2 3.4E-05 7.5E-10 86.1 17.3 37 75-111 18-54 (492)
136 PRK09897 hypothetical protein; 98.2 9.2E-06 2E-10 90.2 11.8 40 204-243 125-165 (534)
137 PF13454 NAD_binding_9: FAD-NA 98.2 2.1E-05 4.6E-10 73.2 12.4 57 186-242 90-155 (156)
138 KOG2820 FAD-dependent oxidored 98.2 3.3E-05 7.2E-10 77.6 14.0 168 74-243 4-211 (399)
139 PRK07573 sdhA succinate dehydr 98.2 3.5E-05 7.5E-10 88.3 16.2 36 76-111 34-69 (640)
140 PRK08071 L-aspartate oxidase; 98.2 3.1E-05 6.7E-10 86.6 15.4 35 76-111 2-36 (510)
141 PF00890 FAD_binding_2: FAD bi 98.2 2.4E-05 5.2E-10 85.5 14.0 57 189-245 140-204 (417)
142 PF13450 NAD_binding_8: NAD(P) 98.1 2.9E-06 6.3E-11 66.6 4.5 30 82-111 1-30 (68)
143 PRK14694 putative mercuric red 98.1 4.4E-05 9.6E-10 84.7 15.4 37 73-109 2-38 (468)
144 PRK06854 adenylylsulfate reduc 98.1 4.6E-05 9.9E-10 86.9 15.3 36 76-111 10-47 (608)
145 PRK10262 thioredoxin reductase 98.1 1.8E-05 3.8E-10 83.3 11.2 36 74-109 3-38 (321)
146 COG1231 Monoamine oxidase [Ami 98.1 2.2E-05 4.7E-10 82.7 11.3 37 75-111 5-41 (450)
147 PTZ00139 Succinate dehydrogena 98.1 0.00012 2.5E-09 83.7 18.0 36 76-111 28-63 (617)
148 PRK06467 dihydrolipoamide dehy 98.1 1.8E-05 3.9E-10 87.7 11.1 36 75-110 2-37 (471)
149 PRK08010 pyridine nucleotide-d 98.1 2E-05 4.4E-10 86.7 11.4 35 76-110 2-36 (441)
150 PRK07057 sdhA succinate dehydr 98.1 0.00013 2.7E-09 83.1 18.0 36 75-110 10-45 (591)
151 PRK06452 sdhA succinate dehydr 98.1 7.4E-05 1.6E-09 84.6 15.9 36 76-111 4-39 (566)
152 PRK05976 dihydrolipoamide dehy 98.0 2.9E-05 6.3E-10 86.2 12.0 34 76-109 3-36 (472)
153 PLN00128 Succinate dehydrogena 98.0 0.0001 2.2E-09 84.3 16.4 36 76-111 49-84 (635)
154 PRK08641 sdhA succinate dehydr 98.0 0.00013 2.9E-09 82.9 17.1 37 75-111 1-37 (589)
155 PLN02507 glutathione reductase 98.0 3.7E-05 8.1E-10 85.7 12.4 35 75-109 23-57 (499)
156 COG1232 HemY Protoporphyrinoge 98.0 5.2E-05 1.1E-09 81.6 12.6 47 192-239 217-263 (444)
157 PRK07803 sdhA succinate dehydr 98.0 0.00014 3.1E-09 83.3 16.8 36 76-111 7-42 (626)
158 PLN02529 lysine-specific histo 98.0 4.2E-06 9.2E-11 95.7 4.2 73 30-110 121-193 (738)
159 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 4E-05 8.8E-10 82.1 11.2 34 78-111 1-34 (433)
160 PRK09078 sdhA succinate dehydr 98.0 0.00016 3.5E-09 82.4 16.8 36 76-111 11-46 (598)
161 PRK06327 dihydrolipoamide dehy 98.0 8.1E-05 1.8E-09 82.7 14.0 33 76-108 3-35 (475)
162 PRK06263 sdhA succinate dehydr 98.0 0.00014 3.1E-09 82.0 16.0 35 76-111 6-40 (543)
163 PRK08275 putative oxidoreducta 98.0 0.00021 4.6E-09 80.9 16.9 36 76-111 8-45 (554)
164 PRK07843 3-ketosteroid-delta-1 98.0 0.00014 3E-09 82.3 15.4 37 75-111 5-41 (557)
165 PRK07818 dihydrolipoamide dehy 97.9 3.3E-05 7.1E-10 85.7 9.8 34 76-109 3-36 (466)
166 PRK08958 sdhA succinate dehydr 97.9 0.00031 6.8E-09 79.8 17.3 36 76-111 6-41 (588)
167 PRK08205 sdhA succinate dehydr 97.9 0.00029 6.3E-09 80.2 17.0 35 76-111 4-38 (583)
168 PRK12842 putative succinate de 97.9 0.00016 3.5E-09 82.1 14.8 37 75-111 7-43 (574)
169 PRK09077 L-aspartate oxidase; 97.9 0.00016 3.6E-09 81.4 14.5 36 75-111 6-41 (536)
170 PLN02815 L-aspartate oxidase 97.9 0.00027 5.8E-09 80.1 15.8 36 75-111 27-62 (594)
171 COG1233 Phytoene dehydrogenase 97.9 1.3E-05 2.7E-10 89.1 5.1 37 75-111 1-37 (487)
172 PRK08626 fumarate reductase fl 97.8 0.00026 5.6E-09 81.4 15.1 37 75-111 3-39 (657)
173 PRK06134 putative FAD-binding 97.8 0.00043 9.3E-09 78.8 16.4 37 74-110 9-45 (581)
174 PRK13748 putative mercuric red 97.8 0.00027 5.8E-09 80.4 14.6 34 76-109 97-130 (561)
175 PRK12834 putative FAD-binding 97.8 0.00043 9.2E-09 78.4 16.0 35 76-110 3-37 (549)
176 PRK09754 phenylpropionate diox 97.8 0.00022 4.8E-09 77.3 12.5 35 76-110 2-38 (396)
177 PRK04965 NADH:flavorubredoxin 97.8 0.00027 5.9E-09 76.1 13.0 100 77-245 141-240 (377)
178 PRK05249 soluble pyridine nucl 97.7 0.00043 9.3E-09 76.8 14.1 100 77-246 175-274 (461)
179 PRK07395 L-aspartate oxidase; 97.7 0.00044 9.6E-09 77.9 14.3 36 75-111 7-42 (553)
180 PLN02546 glutathione reductase 97.7 0.00017 3.7E-09 81.1 10.8 34 75-108 77-110 (558)
181 PRK12844 3-ketosteroid-delta-1 97.7 0.00047 1E-08 78.0 13.8 36 76-111 5-40 (557)
182 PRK07512 L-aspartate oxidase; 97.7 0.00071 1.5E-08 75.8 15.0 35 75-111 7-41 (513)
183 PF06039 Mqo: Malate:quinone o 97.7 0.00051 1.1E-08 72.9 12.7 76 184-259 175-260 (488)
184 PRK07251 pyridine nucleotide-d 97.7 4.3E-05 9.3E-10 84.1 5.1 35 76-110 2-36 (438)
185 PRK14727 putative mercuric red 97.7 0.0001 2.2E-09 82.0 8.0 34 76-109 15-48 (479)
186 TIGR02485 CobZ_N-term precorri 97.7 0.00036 7.9E-09 76.6 12.1 60 191-250 124-189 (432)
187 PRK07845 flavoprotein disulfid 97.6 0.00046 9.9E-09 76.5 13.0 33 78-110 2-34 (466)
188 TIGR01811 sdhA_Bsu succinate d 97.6 0.00053 1.2E-08 78.1 13.7 31 80-110 1-31 (603)
189 COG0029 NadB Aspartate oxidase 97.6 0.00045 9.7E-09 73.5 11.9 168 79-249 9-201 (518)
190 PTZ00153 lipoamide dehydrogena 97.6 0.0005 1.1E-08 78.5 13.3 33 77-109 116-148 (659)
191 PRK06370 mercuric reductase; V 97.6 5.2E-05 1.1E-09 84.1 5.3 36 74-109 2-37 (463)
192 PRK12843 putative FAD-binding 97.6 0.0013 2.9E-08 74.7 16.5 36 76-111 15-50 (578)
193 PRK05249 soluble pyridine nucl 97.6 5.4E-05 1.2E-09 84.0 5.2 37 74-110 2-38 (461)
194 PRK06116 glutathione reductase 97.6 5.6E-05 1.2E-09 83.5 5.2 34 76-109 3-36 (450)
195 PRK09754 phenylpropionate diox 97.6 0.0006 1.3E-08 74.0 13.0 99 77-245 144-242 (396)
196 PRK07208 hypothetical protein; 97.6 6E-05 1.3E-09 84.0 5.4 37 75-111 2-38 (479)
197 TIGR01438 TGR thioredoxin and 97.6 0.00044 9.6E-09 76.8 12.2 33 77-109 2-34 (484)
198 COG1249 Lpd Pyruvate/2-oxoglut 97.6 0.00067 1.5E-08 73.8 13.0 36 75-110 2-37 (454)
199 COG0445 GidA Flavin-dependent 97.6 0.00012 2.7E-09 78.3 7.1 144 76-243 3-157 (621)
200 PRK07846 mycothione reductase; 97.6 0.00079 1.7E-08 74.2 13.9 98 77-245 166-263 (451)
201 PRK12839 hypothetical protein; 97.6 0.0011 2.3E-08 75.2 15.0 38 74-111 5-42 (572)
202 KOG0029 Amine oxidase [Seconda 97.6 7E-05 1.5E-09 82.5 5.3 39 73-111 11-49 (501)
203 PTZ00306 NADH-dependent fumara 97.6 0.001 2.2E-08 81.5 15.7 38 74-111 406-443 (1167)
204 TIGR01421 gluta_reduc_1 glutat 97.6 6.8E-05 1.5E-09 82.7 4.8 34 76-109 1-34 (450)
205 PRK12845 3-ketosteroid-delta-1 97.6 0.0018 3.9E-08 73.2 16.3 37 74-111 13-49 (564)
206 PRK06416 dihydrolipoamide dehy 97.6 0.00086 1.9E-08 74.3 13.6 99 77-245 172-273 (462)
207 PRK06912 acoL dihydrolipoamide 97.6 0.00025 5.4E-09 78.5 9.2 32 79-110 2-33 (458)
208 PRK09564 coenzyme A disulfide 97.6 0.00055 1.2E-08 75.5 11.9 32 79-110 2-35 (444)
209 COG1249 Lpd Pyruvate/2-oxoglut 97.5 0.00083 1.8E-08 73.1 12.8 103 76-248 172-276 (454)
210 TIGR01350 lipoamide_DH dihydro 97.5 0.00097 2.1E-08 74.0 13.7 101 77-247 170-272 (461)
211 TIGR02061 aprA adenosine phosp 97.5 0.00025 5.5E-09 80.4 9.1 33 79-111 1-37 (614)
212 PTZ00318 NADH dehydrogenase-li 97.5 0.00075 1.6E-08 73.8 12.6 36 75-110 8-43 (424)
213 PRK06115 dihydrolipoamide dehy 97.5 8.3E-05 1.8E-09 82.4 5.0 34 76-109 2-35 (466)
214 PRK13512 coenzyme A disulfide 97.5 0.00052 1.1E-08 75.4 11.0 32 79-110 3-36 (438)
215 COG3075 GlpB Anaerobic glycero 97.5 0.00012 2.5E-09 73.4 5.2 50 77-136 2-51 (421)
216 PF13434 K_oxygenase: L-lysine 97.5 0.00049 1.1E-08 72.6 10.3 151 77-250 2-165 (341)
217 PRK06116 glutathione reductase 97.5 0.0011 2.3E-08 73.4 13.5 99 77-245 167-266 (450)
218 TIGR01424 gluta_reduc_2 glutat 97.5 9.2E-05 2E-09 81.6 4.8 33 77-109 2-34 (446)
219 TIGR02733 desat_CrtD C-3',4' d 97.5 0.00011 2.3E-09 82.3 5.2 35 78-112 2-36 (492)
220 KOG2665 Predicted FAD-dependen 97.5 0.0008 1.7E-08 67.1 10.5 38 74-111 45-84 (453)
221 TIGR03315 Se_ygfK putative sel 97.5 0.00014 3E-09 85.9 6.2 36 76-111 536-571 (1012)
222 PRK13800 putative oxidoreducta 97.5 0.0026 5.6E-08 76.2 16.7 37 75-111 11-47 (897)
223 PLN02852 ferredoxin-NADP+ redu 97.5 0.00018 3.9E-09 79.1 6.3 36 76-111 25-62 (491)
224 TIGR02730 carot_isom carotene 97.4 0.00013 2.7E-09 81.7 5.0 60 191-250 230-292 (493)
225 PRK06416 dihydrolipoamide dehy 97.4 0.00014 2.9E-09 80.8 5.2 35 76-110 3-37 (462)
226 PRK06292 dihydrolipoamide dehy 97.4 0.00013 2.8E-09 80.9 5.0 35 75-109 1-35 (460)
227 PLN02507 glutathione reductase 97.4 0.0017 3.7E-08 72.4 14.0 100 77-246 203-302 (499)
228 COG3349 Uncharacterized conser 97.4 0.00014 2.9E-09 78.2 4.7 35 78-112 1-35 (485)
229 PF07992 Pyr_redox_2: Pyridine 97.4 0.00017 3.8E-09 70.0 5.0 32 79-110 1-32 (201)
230 PRK07845 flavoprotein disulfid 97.4 0.0019 4.2E-08 71.5 13.8 99 78-246 178-276 (466)
231 PRK06567 putative bifunctional 97.4 0.00019 4.2E-09 83.3 5.9 35 75-109 381-415 (1028)
232 PRK07233 hypothetical protein; 97.4 0.00015 3.3E-09 79.6 4.9 53 192-244 200-254 (434)
233 TIGR03452 mycothione_red mycot 97.4 0.0019 4.1E-08 71.3 13.5 98 77-245 169-266 (452)
234 PRK12779 putative bifunctional 97.4 0.00018 4E-09 85.5 5.5 35 76-110 305-339 (944)
235 PRK12831 putative oxidoreducta 97.4 0.00022 4.7E-09 78.8 5.6 36 75-110 138-173 (464)
236 PTZ00058 glutathione reductase 97.4 0.00025 5.4E-09 79.7 5.9 37 73-109 44-80 (561)
237 TIGR01424 gluta_reduc_2 glutat 97.3 0.0026 5.6E-08 70.2 13.6 98 77-244 166-263 (446)
238 TIGR00031 UDP-GALP_mutase UDP- 97.3 0.00022 4.9E-09 75.8 5.0 33 78-110 2-34 (377)
239 TIGR02053 MerA mercuric reduct 97.3 0.00021 4.5E-09 79.3 4.9 32 78-109 1-32 (463)
240 PLN02576 protoporphyrinogen ox 97.3 0.00022 4.8E-09 79.9 5.2 36 76-111 11-47 (496)
241 TIGR01421 gluta_reduc_1 glutat 97.3 0.0027 5.8E-08 70.1 13.5 100 77-246 166-267 (450)
242 COG3634 AhpF Alkyl hydroperoxi 97.3 0.00046 1E-08 69.6 6.6 32 75-106 209-240 (520)
243 TIGR01350 lipoamide_DH dihydro 97.3 0.00022 4.8E-09 79.1 4.8 32 78-109 2-33 (461)
244 PRK07818 dihydrolipoamide dehy 97.3 0.003 6.6E-08 70.1 13.6 100 77-246 172-275 (466)
245 PRK07251 pyridine nucleotide-d 97.3 0.0034 7.4E-08 69.1 13.9 98 77-245 157-254 (438)
246 PTZ00188 adrenodoxin reductase 97.3 0.00034 7.3E-09 75.9 5.7 37 76-112 38-75 (506)
247 PRK06912 acoL dihydrolipoamide 97.3 0.0032 6.9E-08 69.7 13.7 100 77-246 170-270 (458)
248 PTZ00363 rab-GDP dissociation 97.3 0.00024 5.2E-09 77.4 4.6 37 75-111 2-38 (443)
249 TIGR02734 crtI_fam phytoene de 97.3 0.00022 4.7E-09 80.0 4.3 61 190-250 219-282 (502)
250 TIGR01316 gltA glutamate synth 97.3 0.00039 8.5E-09 76.6 6.3 37 74-110 130-166 (449)
251 KOG0615 Serine/threonine prote 97.3 0.00051 1.1E-08 71.0 6.3 82 567-659 63-159 (475)
252 PRK11749 dihydropyrimidine deh 97.2 0.00018 3.9E-09 79.5 3.4 37 75-111 138-174 (457)
253 COG1148 HdrA Heterodisulfide r 97.2 0.00031 6.6E-09 74.0 4.7 36 76-111 123-158 (622)
254 PRK06115 dihydrolipoamide dehy 97.2 0.0037 8.1E-08 69.3 13.7 100 77-246 174-278 (466)
255 TIGR02053 MerA mercuric reduct 97.2 0.0035 7.5E-08 69.6 13.4 99 77-245 166-267 (463)
256 PLN02268 probable polyamine ox 97.2 0.00031 6.7E-09 77.3 4.9 39 204-242 212-250 (435)
257 PF13434 K_oxygenase: L-lysine 97.2 0.0039 8.6E-08 65.8 13.0 136 75-242 188-339 (341)
258 PTZ00052 thioredoxin reductase 97.2 0.00033 7.2E-09 78.2 5.0 33 77-109 5-37 (499)
259 PLN02328 lysine-specific histo 97.2 0.00048 1E-08 79.6 6.3 39 73-111 234-272 (808)
260 KOG2852 Possible oxidoreductas 97.2 0.0019 4.2E-08 63.7 9.5 38 75-112 8-51 (380)
261 PRK09853 putative selenate red 97.2 0.00037 8.1E-09 82.0 5.5 37 75-111 537-573 (1019)
262 PRK06327 dihydrolipoamide dehy 97.2 0.004 8.7E-08 69.2 13.3 100 77-246 183-286 (475)
263 TIGR01372 soxA sarcosine oxida 97.2 0.00046 1E-08 83.2 5.9 36 76-111 162-197 (985)
264 PRK06467 dihydrolipoamide dehy 97.2 0.0044 9.6E-08 68.8 13.2 99 78-247 175-277 (471)
265 PRK12778 putative bifunctional 97.2 0.00055 1.2E-08 80.5 6.3 36 75-110 429-464 (752)
266 PRK04965 NADH:flavorubredoxin 97.2 0.0036 7.9E-08 67.4 12.2 33 78-110 3-37 (377)
267 TIGR02731 phytoene_desat phyto 97.2 0.00039 8.5E-09 76.9 4.8 59 79-137 1-71 (453)
268 PRK06370 mercuric reductase; V 97.1 0.0051 1.1E-07 68.2 13.6 100 77-246 171-273 (463)
269 PRK12810 gltD glutamate syntha 97.1 0.00054 1.2E-08 76.0 5.7 37 75-111 141-177 (471)
270 PRK12775 putative trifunctiona 97.1 0.00057 1.2E-08 82.1 6.3 36 76-111 429-464 (1006)
271 PRK05976 dihydrolipoamide dehy 97.1 0.0054 1.2E-07 68.2 13.6 34 77-110 180-213 (472)
272 TIGR03452 mycothione_red mycot 97.1 0.0011 2.4E-08 73.1 7.9 31 77-109 2-32 (452)
273 PRK12769 putative oxidoreducta 97.1 0.00053 1.1E-08 79.3 5.6 36 76-111 326-361 (654)
274 COG4529 Uncharacterized protei 97.1 0.0036 7.9E-08 66.8 11.2 46 204-249 122-169 (474)
275 PF00732 GMC_oxred_N: GMC oxid 97.1 0.00039 8.5E-09 72.2 4.0 34 78-111 1-35 (296)
276 TIGR02374 nitri_red_nirB nitri 97.1 0.0035 7.5E-08 73.9 12.2 99 78-245 141-239 (785)
277 TIGR03169 Nterm_to_SelD pyridi 97.1 0.0025 5.4E-08 68.3 10.2 32 79-110 1-35 (364)
278 PLN02487 zeta-carotene desatur 97.1 0.00072 1.6E-08 76.0 6.1 67 76-144 74-152 (569)
279 TIGR03378 glycerol3P_GlpB glyc 97.1 0.00065 1.4E-08 72.7 5.3 49 78-136 1-49 (419)
280 PRK05329 anaerobic glycerol-3- 97.0 0.00068 1.5E-08 73.4 5.0 34 77-110 2-35 (422)
281 PRK12837 3-ketosteroid-delta-1 97.0 0.00062 1.3E-08 76.3 4.9 35 76-111 6-40 (513)
282 PRK08010 pyridine nucleotide-d 97.0 0.0081 1.8E-07 66.2 13.6 99 77-246 158-256 (441)
283 TIGR01423 trypano_reduc trypan 97.0 0.0075 1.6E-07 67.0 13.3 100 77-246 187-290 (486)
284 PRK12814 putative NADPH-depend 97.0 0.00084 1.8E-08 77.4 5.9 37 75-111 191-227 (652)
285 KOG2844 Dimethylglycine dehydr 97.0 0.016 3.5E-07 63.8 15.0 80 185-265 182-264 (856)
286 PRK14989 nitrite reductase sub 97.0 0.0032 6.9E-08 74.4 10.7 43 202-246 73-115 (847)
287 KOG1335 Dihydrolipoamide dehyd 97.0 0.0048 1E-07 63.4 10.3 35 76-110 38-72 (506)
288 TIGR03385 CoA_CoA_reduc CoA-di 97.0 0.0069 1.5E-07 66.4 12.7 98 77-245 137-234 (427)
289 COG0562 Glf UDP-galactopyranos 97.0 0.00085 1.8E-08 67.4 4.7 34 78-111 2-35 (374)
290 PRK13977 myosin-cross-reactive 97.0 0.0012 2.6E-08 73.1 6.3 36 76-111 21-60 (576)
291 PRK13512 coenzyme A disulfide 97.0 0.0068 1.5E-07 66.7 12.3 33 78-110 149-181 (438)
292 PRK14989 nitrite reductase sub 97.0 0.0059 1.3E-07 72.1 12.3 100 78-246 146-247 (847)
293 PRK12835 3-ketosteroid-delta-1 97.0 0.00087 1.9E-08 76.2 5.3 36 76-111 10-45 (584)
294 PTZ00052 thioredoxin reductase 97.0 0.0097 2.1E-07 66.5 13.5 97 78-245 183-279 (499)
295 KOG0245 Kinesin-like protein [ 97.0 0.0034 7.3E-08 71.5 9.6 81 566-658 475-557 (1221)
296 TIGR02732 zeta_caro_desat caro 96.9 0.0008 1.7E-08 74.6 4.8 33 79-111 1-33 (474)
297 TIGR02462 pyranose_ox pyranose 96.9 0.00085 1.8E-08 74.6 4.8 35 78-112 1-35 (544)
298 PLN02676 polyamine oxidase 96.9 0.00097 2.1E-08 74.1 5.2 56 190-245 224-287 (487)
299 TIGR01318 gltD_gamma_fam gluta 96.9 0.0012 2.5E-08 73.2 5.6 36 76-111 140-175 (467)
300 PRK02106 choline dehydrogenase 96.9 0.001 2.2E-08 75.6 5.2 36 75-110 3-39 (560)
301 KOG2311 NAD/FAD-utilizing prot 96.9 0.003 6.5E-08 66.5 8.0 150 75-250 26-190 (679)
302 PRK07846 mycothione reductase; 96.9 0.002 4.4E-08 71.0 7.0 31 77-109 1-31 (451)
303 PRK06292 dihydrolipoamide dehy 96.8 0.012 2.7E-07 65.2 13.1 34 77-110 169-202 (460)
304 PRK12809 putative oxidoreducta 96.8 0.0016 3.4E-08 75.1 6.2 36 76-111 309-344 (639)
305 PRK12770 putative glutamate sy 96.8 0.0017 3.6E-08 69.3 5.8 36 76-111 17-52 (352)
306 TIGR01423 trypano_reduc trypan 96.8 0.0012 2.6E-08 73.3 4.8 34 76-109 2-36 (486)
307 COG3573 Predicted oxidoreducta 96.8 0.0015 3.3E-08 65.6 4.9 38 75-112 3-40 (552)
308 PLN02612 phytoene desaturase 96.8 0.0016 3.6E-08 73.7 5.5 36 75-110 91-126 (567)
309 PTZ00058 glutathione reductase 96.8 0.018 3.9E-07 64.9 13.6 100 77-246 237-338 (561)
310 PRK14694 putative mercuric red 96.7 0.018 3.9E-07 63.9 13.4 98 77-246 178-275 (468)
311 TIGR01438 TGR thioredoxin and 96.7 0.017 3.7E-07 64.2 13.2 96 78-244 181-279 (484)
312 COG1053 SdhA Succinate dehydro 96.7 0.0017 3.7E-08 72.8 5.1 39 74-112 3-41 (562)
313 TIGR02374 nitri_red_nirB nitri 96.7 0.0065 1.4E-07 71.7 10.0 42 202-245 68-109 (785)
314 TIGR01317 GOGAT_sm_gam glutama 96.7 0.0022 4.8E-08 71.3 5.6 36 76-111 142-177 (485)
315 PRK12771 putative glutamate sy 96.7 0.0025 5.5E-08 72.4 6.1 37 75-111 135-171 (564)
316 COG0493 GltD NADPH-dependent g 96.7 0.002 4.3E-08 70.3 4.9 36 76-111 122-157 (457)
317 COG0446 HcaD Uncharacterized N 96.6 0.016 3.5E-07 62.9 12.1 99 77-244 136-237 (415)
318 PRK14727 putative mercuric red 96.6 0.023 5E-07 63.2 13.3 98 78-247 189-286 (479)
319 PRK09564 coenzyme A disulfide 96.6 0.023 5.1E-07 62.6 13.1 33 77-109 149-181 (444)
320 PTZ00318 NADH dehydrogenase-li 96.6 0.022 4.8E-07 62.3 12.5 38 203-244 243-280 (424)
321 PRK13748 putative mercuric red 96.5 0.031 6.7E-07 63.7 13.2 98 77-246 270-367 (561)
322 TIGR02352 thiamin_ThiO glycine 96.4 0.22 4.8E-06 52.4 18.5 61 184-245 131-194 (337)
323 KOG2404 Fumarate reductase, fl 96.3 0.014 3E-07 58.7 8.0 33 79-111 11-43 (477)
324 PRK13984 putative oxidoreducta 96.3 0.0046 1E-07 71.0 5.6 37 75-111 281-317 (604)
325 COG2907 Predicted NAD/FAD-bind 96.3 0.0033 7.2E-08 63.8 3.7 34 76-110 7-40 (447)
326 TIGR02500 type_III_yscD type I 96.3 0.016 3.5E-07 62.8 9.3 86 546-648 3-89 (410)
327 PLN02546 glutathione reductase 96.3 0.045 9.8E-07 61.7 13.2 33 77-109 252-284 (558)
328 PTZ00153 lipoamide dehydrogena 96.3 0.042 9.1E-07 63.0 13.0 33 78-110 313-345 (659)
329 COG1252 Ndh NADH dehydrogenase 96.3 0.019 4.1E-07 61.2 9.4 35 76-110 2-38 (405)
330 COG2509 Uncharacterized FAD-de 96.3 0.027 5.8E-07 59.7 10.2 42 203-244 188-230 (486)
331 PLN03000 amine oxidase 96.2 0.0055 1.2E-07 71.2 5.5 36 76-111 183-218 (881)
332 TIGR03197 MnmC_Cterm tRNA U-34 96.2 0.051 1.1E-06 58.6 12.7 61 185-245 130-191 (381)
333 COG2303 BetA Choline dehydroge 96.1 0.0049 1.1E-07 69.4 4.3 37 74-110 4-40 (542)
334 KOG1276 Protoporphyrinogen oxi 96.1 0.0067 1.5E-07 63.4 4.9 36 75-110 9-46 (491)
335 PLN02976 amine oxidase 96.1 0.0068 1.5E-07 73.0 5.3 35 76-110 692-726 (1713)
336 TIGR03140 AhpF alkyl hydropero 96.1 0.039 8.4E-07 62.0 11.3 33 77-109 352-384 (515)
337 TIGR01810 betA choline dehydro 96.1 0.0046 1E-07 69.8 3.9 32 79-110 1-33 (532)
338 KOG1800 Ferredoxin/adrenodoxin 96.0 0.0079 1.7E-07 61.9 4.8 38 76-113 19-58 (468)
339 COG1252 Ndh NADH dehydrogenase 96.0 0.023 5E-07 60.6 8.5 43 203-249 224-268 (405)
340 COG3486 IucD Lysine/ornithine 96.0 0.019 4E-07 60.0 7.5 153 74-249 2-162 (436)
341 KOG0399 Glutamate synthase [Am 96.0 0.008 1.7E-07 69.2 5.1 37 75-111 1783-1819(2142)
342 KOG0685 Flavin-containing amin 96.0 0.0096 2.1E-07 63.3 5.2 36 75-110 19-55 (498)
343 COG1206 Gid NAD(FAD)-utilizing 95.9 0.007 1.5E-07 61.0 3.8 36 76-111 2-37 (439)
344 KOG2853 Possible oxidoreductas 95.9 0.0068 1.5E-07 61.3 3.7 36 76-111 85-124 (509)
345 PLN02785 Protein HOTHEAD 95.9 0.0098 2.1E-07 67.5 5.4 36 75-111 53-88 (587)
346 TIGR01292 TRX_reduct thioredox 95.7 0.11 2.4E-06 53.6 12.1 33 77-109 141-173 (300)
347 KOG2293 Daxx-interacting prote 95.7 0.032 6.9E-07 59.5 7.7 85 565-658 445-532 (547)
348 KOG0404 Thioredoxin reductase 95.7 0.062 1.4E-06 51.3 8.7 32 78-109 9-40 (322)
349 PRK10262 thioredoxin reductase 95.6 0.11 2.5E-06 54.4 11.8 34 77-110 146-179 (321)
350 KOG1335 Dihydrolipoamide dehyd 95.3 0.083 1.8E-06 54.7 8.7 101 77-247 211-317 (506)
351 PRK15317 alkyl hydroperoxide r 95.3 0.12 2.6E-06 58.1 11.2 33 77-109 351-383 (517)
352 KOG0042 Glycerol-3-phosphate d 95.2 0.01 2.2E-07 63.7 2.1 39 74-112 64-102 (680)
353 PF01210 NAD_Gly3P_dh_N: NAD-d 95.2 0.024 5.2E-07 52.7 4.3 32 79-110 1-32 (157)
354 PF03721 UDPG_MGDP_dh_N: UDP-g 95.0 0.022 4.7E-07 54.5 3.6 34 78-111 1-34 (185)
355 PF02737 3HCDH_N: 3-hydroxyacy 95.0 0.03 6.6E-07 53.3 4.5 33 79-111 1-33 (180)
356 KOG1336 Monodehydroascorbate/f 94.9 0.22 4.7E-06 53.4 10.9 100 77-245 213-314 (478)
357 TIGR03169 Nterm_to_SelD pyridi 94.8 0.25 5.4E-06 52.8 11.7 38 203-244 206-243 (364)
358 KOG3851 Sulfide:quinone oxidor 94.8 0.025 5.5E-07 56.8 3.4 37 74-110 36-74 (446)
359 COG0569 TrkA K+ transport syst 94.7 0.04 8.8E-07 54.5 4.6 35 78-112 1-35 (225)
360 KOG1892 Actin filament-binding 94.4 0.088 1.9E-06 59.7 6.9 100 543-658 356-456 (1629)
361 KOG1346 Programmed cell death 94.2 0.12 2.6E-06 53.9 6.8 40 203-242 408-447 (659)
362 KOG4254 Phytoene desaturase [C 94.1 0.05 1.1E-06 57.4 4.0 35 75-109 12-46 (561)
363 PRK06249 2-dehydropantoate 2-r 94.1 0.076 1.7E-06 55.5 5.5 35 76-110 4-38 (313)
364 COG1251 NirB NAD(P)H-nitrite r 94.1 0.17 3.7E-06 56.9 8.2 32 78-109 146-177 (793)
365 PRK01438 murD UDP-N-acetylmura 94.0 0.07 1.5E-06 59.5 5.3 35 76-110 15-49 (480)
366 PF02558 ApbA: Ketopantoate re 94.0 0.082 1.8E-06 48.6 4.9 30 80-109 1-30 (151)
367 PRK02705 murD UDP-N-acetylmura 93.9 0.061 1.3E-06 59.6 4.6 32 79-110 2-33 (459)
368 TIGR01663 PNK-3'Pase polynucle 93.6 0.21 4.7E-06 55.4 8.0 69 567-648 31-101 (526)
369 PRK06129 3-hydroxyacyl-CoA deh 93.4 0.089 1.9E-06 54.9 4.6 32 79-110 4-35 (308)
370 PRK07530 3-hydroxybutyryl-CoA 93.4 0.1 2.2E-06 53.9 5.0 34 77-110 4-37 (292)
371 PRK07819 3-hydroxybutyryl-CoA 93.4 0.11 2.3E-06 53.6 5.0 34 78-111 6-39 (286)
372 PF00996 GDI: GDP dissociation 93.4 0.089 1.9E-06 57.0 4.5 36 75-110 2-37 (438)
373 PRK08293 3-hydroxybutyryl-CoA 93.2 0.12 2.5E-06 53.4 5.0 33 78-110 4-36 (287)
374 COG1004 Ugd Predicted UDP-gluc 93.2 0.1 2.2E-06 54.7 4.4 35 78-112 1-35 (414)
375 KOG1238 Glucose dehydrogenase/ 93.2 0.11 2.3E-06 57.8 4.8 39 74-112 54-93 (623)
376 PRK06719 precorrin-2 dehydroge 93.0 0.15 3.4E-06 47.2 5.0 35 74-108 10-44 (157)
377 TIGR02730 carot_isom carotene 93.0 2.8 6E-05 46.9 16.0 35 78-112 1-35 (493)
378 PRK05708 2-dehydropantoate 2-r 93.0 0.13 2.9E-06 53.5 5.0 32 78-109 3-34 (305)
379 PRK14106 murD UDP-N-acetylmura 93.0 0.14 3E-06 56.5 5.5 35 76-110 4-38 (450)
380 PRK07066 3-hydroxybutyryl-CoA 92.8 0.17 3.6E-06 52.8 5.4 34 78-111 8-41 (321)
381 KOG2960 Protein involved in th 92.8 0.03 6.5E-07 52.9 -0.2 35 77-111 76-112 (328)
382 PRK06035 3-hydroxyacyl-CoA deh 92.6 0.16 3.5E-06 52.5 5.0 33 78-110 4-36 (291)
383 cd02929 TMADH_HD_FMN Trimethyl 92.6 0.044 9.5E-07 58.6 0.7 44 20-65 326-369 (370)
384 PRK05808 3-hydroxybutyryl-CoA 92.5 0.16 3.5E-06 52.2 4.9 34 78-111 4-37 (282)
385 PRK12921 2-dehydropantoate 2-r 92.5 0.15 3.3E-06 52.9 4.8 30 79-108 2-31 (305)
386 KOG4716 Thioredoxin reductase 92.5 0.14 3E-06 52.1 4.0 38 74-111 16-53 (503)
387 PF13241 NAD_binding_7: Putati 92.5 0.12 2.6E-06 44.2 3.2 34 76-109 6-39 (103)
388 PRK06522 2-dehydropantoate 2-r 92.4 0.16 3.4E-06 52.8 4.7 31 79-109 2-32 (304)
389 PRK09260 3-hydroxybutyryl-CoA 92.4 0.15 3.3E-06 52.5 4.6 33 79-111 3-35 (288)
390 PRK11064 wecC UDP-N-acetyl-D-m 92.4 0.16 3.4E-06 55.3 4.7 35 77-111 3-37 (415)
391 KOG3923 D-aspartate oxidase [A 92.3 0.13 2.8E-06 51.6 3.5 36 76-111 2-44 (342)
392 TIGR01470 cysG_Nterm siroheme 92.3 0.21 4.6E-06 48.6 5.0 34 76-109 8-41 (205)
393 KOG0241 Kinesin-like protein [ 92.2 0.46 1E-05 54.2 7.9 104 541-663 443-548 (1714)
394 PF13478 XdhC_C: XdhC Rossmann 92.1 0.15 3.3E-06 45.9 3.6 32 80-111 1-32 (136)
395 PLN02612 phytoene desaturase 92.0 4.1 9E-05 46.3 15.8 57 192-249 310-370 (567)
396 TIGR02734 crtI_fam phytoene de 92.0 8.5 0.00018 43.1 18.3 32 80-111 1-32 (502)
397 PF00899 ThiF: ThiF family; I 92.0 0.21 4.6E-06 45.0 4.4 34 77-110 2-36 (135)
398 TIGR02354 thiF_fam2 thiamine b 91.8 0.23 5.1E-06 48.1 4.8 34 76-109 20-54 (200)
399 PRK06718 precorrin-2 dehydroge 91.8 0.26 5.6E-06 47.8 5.1 35 75-109 8-42 (202)
400 cd05292 LDH_2 A subgroup of L- 91.5 0.25 5.4E-06 51.4 5.0 32 79-110 2-35 (308)
401 PF01262 AlaDh_PNT_C: Alanine 91.5 0.3 6.6E-06 45.9 5.1 35 76-110 19-53 (168)
402 PRK12810 gltD glutamate syntha 91.4 1.4 3E-05 48.9 11.0 33 77-109 281-314 (471)
403 PF00056 Ldh_1_N: lactate/mala 91.3 0.37 8.1E-06 43.8 5.2 33 78-110 1-36 (141)
404 PF02254 TrkA_N: TrkA-N domain 91.3 0.31 6.6E-06 42.5 4.5 32 80-111 1-32 (116)
405 PRK04148 hypothetical protein; 91.2 0.24 5.3E-06 44.2 3.8 32 78-110 18-49 (134)
406 PF01488 Shikimate_DH: Shikima 91.2 0.43 9.2E-06 43.0 5.5 35 76-110 11-46 (135)
407 PRK15116 sulfur acceptor prote 91.1 0.32 6.9E-06 49.2 5.0 35 76-110 29-64 (268)
408 PRK00066 ldh L-lactate dehydro 91.1 0.38 8.1E-06 50.2 5.7 36 75-110 4-41 (315)
409 PRK08229 2-dehydropantoate 2-r 91.1 0.29 6.2E-06 51.8 5.0 32 78-109 3-34 (341)
410 PRK06130 3-hydroxybutyryl-CoA 91.0 0.32 6.9E-06 50.8 5.2 33 78-110 5-37 (311)
411 PRK07233 hypothetical protein; 90.9 11 0.00025 40.9 17.6 34 79-112 1-34 (434)
412 TIGR01763 MalateDH_bact malate 90.8 0.35 7.6E-06 50.2 5.2 32 78-109 2-34 (305)
413 PLN02545 3-hydroxybutyryl-CoA 90.8 0.34 7.3E-06 50.2 5.1 33 78-110 5-37 (295)
414 PF00743 FMO-like: Flavin-bind 90.7 0.55 1.2E-05 52.7 7.0 36 75-110 181-216 (531)
415 PTZ00082 L-lactate dehydrogena 90.7 0.43 9.3E-06 49.9 5.7 36 76-111 5-41 (321)
416 TIGR03377 glycerol3P_GlpA glyc 90.6 1.4 3E-05 49.6 10.1 61 185-245 123-191 (516)
417 PRK14620 NAD(P)H-dependent gly 90.5 0.34 7.4E-06 51.0 4.9 32 79-110 2-33 (326)
418 cd00401 AdoHcyase S-adenosyl-L 90.5 0.34 7.4E-06 52.2 4.8 35 76-110 201-235 (413)
419 PRK14618 NAD(P)H-dependent gly 90.4 0.36 7.9E-06 50.8 4.9 33 78-110 5-37 (328)
420 cd01080 NAD_bind_m-THF_DH_Cycl 90.3 0.46 9.9E-06 44.6 5.0 35 75-109 42-77 (168)
421 TIGR00518 alaDH alanine dehydr 90.3 0.39 8.4E-06 51.4 5.1 35 76-110 166-200 (370)
422 PRK14619 NAD(P)H-dependent gly 90.3 0.44 9.5E-06 49.7 5.4 34 77-110 4-37 (308)
423 PRK09424 pntA NAD(P) transhydr 90.2 0.34 7.3E-06 53.6 4.6 35 76-110 164-198 (509)
424 KOG1336 Monodehydroascorbate/f 90.2 1.9 4E-05 46.5 9.8 42 204-248 143-184 (478)
425 TIGR03026 NDP-sugDHase nucleot 90.2 0.31 6.8E-06 53.0 4.3 33 79-111 2-34 (411)
426 PRK12770 putative glutamate sy 90.1 0.41 8.8E-06 51.0 5.1 34 77-110 172-206 (352)
427 PRK12475 thiamine/molybdopteri 90.0 0.41 8.8E-06 50.5 4.9 35 76-110 23-58 (338)
428 PF13738 Pyr_redox_3: Pyridine 90.0 0.38 8.2E-06 46.5 4.4 36 75-110 165-200 (203)
429 TIGR01316 gltA glutamate synth 89.8 0.39 8.4E-06 53.0 4.8 34 77-110 272-305 (449)
430 TIGR03143 AhpF_homolog putativ 89.8 0.36 7.8E-06 54.8 4.6 34 77-110 143-176 (555)
431 PRK07417 arogenate dehydrogena 89.5 0.4 8.8E-06 49.2 4.4 32 79-110 2-33 (279)
432 TIGR01372 soxA sarcosine oxida 89.5 2.2 4.9E-05 51.9 11.3 33 77-109 317-350 (985)
433 TIGR02356 adenyl_thiF thiazole 89.4 0.53 1.1E-05 45.7 4.9 35 76-110 20-55 (202)
434 PRK12831 putative oxidoreducta 89.4 0.46 1E-05 52.6 5.0 35 76-110 280-314 (464)
435 PRK07502 cyclohexadienyl dehyd 89.2 0.51 1.1E-05 49.1 4.9 34 77-110 6-41 (307)
436 PRK00094 gpsA NAD(P)H-dependen 89.2 0.47 1E-05 49.8 4.7 32 79-110 3-34 (325)
437 TIGR02964 xanthine_xdhC xanthi 89.0 0.59 1.3E-05 46.8 5.0 36 76-111 99-134 (246)
438 PRK06223 malate dehydrogenase; 88.9 0.58 1.3E-05 48.7 5.0 33 78-110 3-36 (307)
439 cd01487 E1_ThiF_like E1_ThiF_l 88.7 0.63 1.4E-05 44.0 4.7 32 79-110 1-33 (174)
440 PRK07688 thiamine/molybdopteri 88.7 0.6 1.3E-05 49.2 5.0 35 76-110 23-58 (339)
441 TIGR03467 HpnE squalene-associ 88.5 20 0.00044 38.7 17.2 53 192-244 199-254 (419)
442 PRK15057 UDP-glucose 6-dehydro 88.5 0.53 1.1E-05 50.6 4.5 33 79-112 2-34 (388)
443 PLN02353 probable UDP-glucose 88.4 0.57 1.2E-05 51.7 4.8 35 78-112 2-38 (473)
444 PRK07531 bifunctional 3-hydrox 88.4 0.62 1.3E-05 52.0 5.1 34 78-111 5-38 (495)
445 TIGR02355 moeB molybdopterin s 88.4 0.67 1.5E-05 46.3 4.9 35 76-110 23-58 (240)
446 TIGR01915 npdG NADPH-dependent 88.1 0.7 1.5E-05 45.5 4.8 32 79-110 2-34 (219)
447 PRK08268 3-hydroxy-acyl-CoA de 88.1 0.66 1.4E-05 51.8 5.1 35 77-111 7-41 (507)
448 PRK08644 thiamine biosynthesis 88.1 0.76 1.6E-05 45.0 4.9 35 76-110 27-62 (212)
449 PRK05690 molybdopterin biosynt 88.0 0.75 1.6E-05 46.1 5.0 35 76-110 31-66 (245)
450 cd05291 HicDH_like L-2-hydroxy 88.0 0.72 1.6E-05 48.0 5.0 32 79-110 2-35 (306)
451 cd01483 E1_enzyme_family Super 88.0 0.76 1.7E-05 41.8 4.6 32 79-110 1-33 (143)
452 TIGR00936 ahcY adenosylhomocys 87.8 0.79 1.7E-05 49.2 5.3 35 76-110 194-228 (406)
453 cd05293 LDH_1 A subgroup of L- 87.6 0.88 1.9E-05 47.4 5.3 34 77-110 3-38 (312)
454 TIGR02279 PaaC-3OHAcCoADH 3-hy 87.5 0.69 1.5E-05 51.6 4.8 34 78-111 6-39 (503)
455 cd01075 NAD_bind_Leu_Phe_Val_D 87.5 0.98 2.1E-05 43.8 5.3 34 76-109 27-60 (200)
456 PRK08306 dipicolinate synthase 87.5 0.82 1.8E-05 47.3 5.0 35 76-110 151-185 (296)
457 COG1748 LYS9 Saccharopine dehy 87.4 0.75 1.6E-05 48.9 4.7 34 78-111 2-36 (389)
458 PF03446 NAD_binding_2: NAD bi 87.4 0.84 1.8E-05 42.6 4.6 34 78-111 2-35 (163)
459 PRK02472 murD UDP-N-acetylmura 87.4 0.82 1.8E-05 50.4 5.3 34 77-110 5-38 (447)
460 COG5044 MRS6 RAB proteins gera 87.2 0.86 1.9E-05 47.2 4.8 36 76-111 5-40 (434)
461 PF10727 Rossmann-like: Rossma 87.1 0.4 8.7E-06 42.6 2.1 34 75-108 8-41 (127)
462 PRK04308 murD UDP-N-acetylmura 87.1 0.96 2.1E-05 49.9 5.6 34 77-110 5-38 (445)
463 cd00757 ThiF_MoeB_HesA_family 87.0 0.9 2E-05 45.0 4.8 35 76-110 20-55 (228)
464 PTZ00117 malate dehydrogenase; 86.9 0.97 2.1E-05 47.3 5.3 35 76-110 4-39 (319)
465 PRK12549 shikimate 5-dehydroge 86.5 1 2.2E-05 46.3 5.0 34 76-109 126-160 (284)
466 COG1893 ApbA Ketopantoate redu 86.5 0.84 1.8E-05 47.4 4.4 32 78-109 1-32 (307)
467 cd01078 NAD_bind_H4MPT_DH NADP 86.4 1.1 2.4E-05 43.1 5.0 34 76-109 27-61 (194)
468 COG1063 Tdh Threonine dehydrog 86.4 0.83 1.8E-05 48.5 4.5 31 79-109 171-202 (350)
469 PRK08328 hypothetical protein; 86.4 1 2.2E-05 44.8 4.8 35 76-110 26-61 (231)
470 TIGR00561 pntA NAD(P) transhyd 86.3 0.86 1.9E-05 50.4 4.6 34 77-110 164-197 (511)
471 PRK11749 dihydropyrimidine deh 86.3 0.86 1.9E-05 50.4 4.7 33 77-109 273-306 (457)
472 cd00755 YgdL_like Family of ac 86.3 1 2.3E-05 44.6 4.8 35 76-110 10-45 (231)
473 PRK09496 trkA potassium transp 86.2 0.86 1.9E-05 50.3 4.7 33 79-111 2-34 (453)
474 PF00670 AdoHcyase_NAD: S-aden 86.2 1.1 2.3E-05 41.5 4.4 35 76-110 22-56 (162)
475 cd01339 LDH-like_MDH L-lactate 86.1 0.85 1.8E-05 47.3 4.3 31 80-110 1-32 (300)
476 KOG2304 3-hydroxyacyl-CoA dehy 86.0 0.79 1.7E-05 44.1 3.6 36 76-111 10-45 (298)
477 cd01492 Aos1_SUMO Ubiquitin ac 86.0 1.1 2.3E-05 43.4 4.6 35 76-110 20-55 (197)
478 PRK05476 S-adenosyl-L-homocyst 86.0 1.1 2.3E-05 48.6 5.0 35 76-110 211-245 (425)
479 PLN02576 protoporphyrinogen ox 86.0 20 0.00043 40.0 15.5 51 191-241 240-294 (496)
480 TIGR03736 PRTRC_ThiF PRTRC sys 85.9 1.1 2.4E-05 44.6 4.7 36 75-110 9-55 (244)
481 TIGR03862 flavo_PP4765 unchara 85.8 3 6.5E-05 44.5 8.3 55 188-244 84-141 (376)
482 cd05311 NAD_bind_2_malic_enz N 85.8 1.2 2.6E-05 44.1 4.9 34 76-109 24-60 (226)
483 PRK11730 fadB multifunctional 85.7 0.82 1.8E-05 53.4 4.3 35 77-111 313-347 (715)
484 cd05191 NAD_bind_amino_acid_DH 85.7 1.9 4.1E-05 35.4 5.3 33 76-108 22-55 (86)
485 TIGR02853 spore_dpaA dipicolin 85.6 1.2 2.6E-05 45.8 5.1 35 76-110 150-184 (287)
486 PRK01710 murD UDP-N-acetylmura 85.6 0.99 2.1E-05 49.9 4.7 33 78-110 15-47 (458)
487 TIGR02437 FadB fatty oxidation 85.5 0.96 2.1E-05 52.8 4.8 36 76-111 312-347 (714)
488 COG3486 IucD Lysine/ornithine 85.5 13 0.00027 39.6 12.3 48 203-250 293-346 (436)
489 PRK10669 putative cation:proto 85.1 0.96 2.1E-05 51.4 4.5 35 77-111 417-451 (558)
490 cd01485 E1-1_like Ubiquitin ac 85.1 1.3 2.8E-05 42.9 4.7 35 76-110 18-53 (198)
491 PRK03369 murD UDP-N-acetylmura 85.0 1.2 2.5E-05 49.8 5.0 32 78-109 13-44 (488)
492 PRK00683 murD UDP-N-acetylmura 84.8 1.2 2.6E-05 48.7 4.9 34 77-110 3-36 (418)
493 TIGR02733 desat_CrtD C-3',4' d 84.8 21 0.00046 39.8 15.1 54 190-243 232-293 (492)
494 PRK08223 hypothetical protein; 84.7 1.3 2.9E-05 45.1 4.7 35 76-110 26-61 (287)
495 cd05290 LDH_3 A subgroup of L- 84.6 1.3 2.8E-05 46.0 4.7 32 79-110 1-34 (307)
496 PLN02976 amine oxidase 84.5 53 0.0011 41.3 18.4 48 191-241 937-994 (1713)
497 TIGR01505 tartro_sem_red 2-hyd 84.5 1 2.2E-05 46.4 4.0 32 79-110 1-32 (291)
498 TIGR02441 fa_ox_alpha_mit fatt 84.4 1.2 2.5E-05 52.3 4.7 36 76-111 334-369 (737)
499 PF01593 Amino_oxidase: Flavin 84.2 0.95 2.1E-05 49.0 3.8 26 87-112 1-26 (450)
500 PLN02676 polyamine oxidase 83.7 2.9 6.3E-05 46.6 7.4 37 75-111 24-61 (487)
No 1
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=3e-84 Score=716.67 Aligned_cols=660 Identities=71% Similarity=1.179 Sum_probs=535.5
Q ss_pred CcccccccCCCcccce--eecccCcccccCCcccccccccccccccccccccCCCcccccccccccCCCCCCC----CCC
Q 005770 1 MVSSMFYNSVNLSTAV--FSRTHFPVPVYKHSCIEFSRYDHCINYKFRTGTSGQSKNPTQMKAAVAESPTNNS----DSE 74 (678)
Q Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 74 (678)
|++++|++++|.+++. +||+|+|.+...+...++.++..|+..+......+ .+...++...+..+..+. ...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (668)
T PLN02927 1 MGSTLFCYSINPSPSKLDFTRTHVFSPVAKQFYLDLSSFSGKPGGGLSGFRSR--KALLGVKAATALVEKEEKREAVTEK 78 (668)
T ss_pred CCccccccCCCccchhhhccccCCCCcccccchhhhccccccCccccccccch--hhhcchhhhhhhccccccccccccc
Confidence 8999999999999999 99999999999999999999999886433322222 222223333322222211 123
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~ 154 (678)
.+..+|+||||||+||++|+.|+++|++|+||||++...+..|.+++++.++++++++|+++++++.+++.+.+......
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 45689999999999999999999999999999998644344444445688999999999999766778887776543333
Q ss_pred eeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEecc
Q 005770 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGD 234 (678)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~ 234 (678)
+..+.++..+.+...++...+....+.+..+.|+|..|+++|.+.++...++++++|+++++++++|++++.+|+++++|
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aD 238 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGD 238 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcC
Confidence 33334444455555554332223345566789999999999999887766889999999999999999999999999999
Q ss_pred EEEEecCCCchhhhhhcCCCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEEEeCCCCCCC
Q 005770 235 LLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVD 314 (678)
Q Consensus 235 ~vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 314 (678)
+||||||++|.+|+.+++.....|.++.+|.++.+..+.+.....+..|.++..+++.++..++.+.|+.+...+.....
T Consensus 239 lVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~~~~ 318 (668)
T PLN02927 239 LLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAGGAD 318 (668)
T ss_pred EEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCccccc
Confidence 99999999999999997666678888889888877655444444455677777777777777777788777655433222
Q ss_pred CcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHHHHHHHHH
Q 005770 315 GPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLA 394 (678)
Q Consensus 315 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~Da~~La 394 (678)
.+....+.+.+.+..|.+.+.+++...+...+..+.++.+.+..+|..|||+|+|||||.|+|+.|||+|+||+||..|+
T Consensus 319 ~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La 398 (668)
T PLN02927 319 APNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLA 398 (668)
T ss_pred cchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHH
Confidence 34456788889999999988887776655555666777776777899999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccccCCCCcchhh
Q 005770 395 VELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRF 474 (678)
Q Consensus 395 ~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~ 474 (678)
++|..++++....+.+.+.+.+|+.|+++|++++..++..+++...+...++.+.+.++.|+.+++.++++.++++..|+
T Consensus 399 ~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~~~~~~y~~~~~~p~~~~~~~~~~~~~~~~~~~ 478 (668)
T PLN02927 399 LELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRVPHPGRVGGRF 478 (668)
T ss_pred HHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCCCceeeee
Confidence 99998765432222344678999999999999999999999999999988887777889999999999999999999999
Q ss_pred HHhhhhhhhhHhhhccccccceeeecccccccccCCCCCCccccCcccchhhhhhhcCChhhhHhcCCceEEEecCCCCC
Q 005770 475 FIDLAMPLMLSWVLGGNSIGQLVISYDHICISSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENV 554 (678)
Q Consensus 475 ~~~~~~~~~~~~~~~~~y~~~~~i~~~~s~~~~~~~~~~~~~~~~~~pG~~p~~~~~~g~~~~~~~~~~~~Ll~~~~~~~ 554 (678)
|+..+|+.|+.|..|.+ ++.++|+++.++..+.+-+-...|+.|+.++...+++.|+|+..++...
T Consensus 479 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~ 544 (668)
T PLN02927 479 FVDIAMPLMLDWVLGGN--------------SEKLEGRPPSCRLTDKADDRLREWFEDDDALERTIKGEWYLIPHGDDCC 544 (668)
T ss_pred eeecccHHHhhhhhcCC--------------ccccCCCCCccccccchhHHHHHHhcccHHHHHhhcCCeEEEecCCCCc
Confidence 99999999999998765 4456788888999999988555699999999999999999999987764
Q ss_pred cCcceeeecccCCCcEEeCCCCCCCCCcceEEeCCCcccccceEEEEeCCEEEEEeCCCCCceEecCCCCceeecCCCCc
Q 005770 555 VSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFP 634 (678)
Q Consensus 555 ~~~~l~~~~~~~~~~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~~~~~~i~Dl~S~nGt~v~~~~~~~~~~~~~~~ 634 (678)
..+++.+. +.++.+++|||.++++.++..|+|+++.||+.||+|.++++.|+|+||+|+|||||||.+++++++.|+.+
T Consensus 545 ~~~~~~l~-~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~~~~~~~~Dl~S~nGT~v~~~~~~r~~~~p~~~ 623 (668)
T PLN02927 545 VSETLCLT-KDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDGAFFLMDLRSEHGTYVTDNEGRRYRATPNFP 623 (668)
T ss_pred ccceeeee-cCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEECCEEEEEECCCCCccEEeCCCCceEecCCCCc
Confidence 56777776 66788999999999887778889999999999999999999999999999999999999999899999999
Q ss_pred EEeCCCCEEEECCCceEEEEEEeccCCCCCccccccc--hhhhhcC
Q 005770 635 ARFRPSDTIEFGSDKKAIFRVKVIGTPPNNNSERKEA--GEILQAV 678 (678)
Q Consensus 635 ~~l~~gd~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 678 (678)
+.|++||+|+||+...+.||++....+|... ++++- .++||+|
T Consensus 624 ~~l~~~d~I~~g~~~~~~fr~~~~~~~~~~~-~~~~~~~~~~~~~~ 668 (668)
T PLN02927 624 ARFRSSDIIEFGSDKKAAFRVKVIRKTPKST-RKNESNNDKLLQTA 668 (668)
T ss_pred eEeCCCCEEEeCCCcceeEEEEeecCCCcch-hhcccchhhhhhcC
Confidence 9999999999999877779999998888876 44443 5899986
No 2
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=423.94 Aligned_cols=483 Identities=19% Similarity=0.190 Sum_probs=281.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~ 153 (678)
.+..+||+||||||+||++|+.|+++|++|+|+||.+.+... .+++.++++++++|+++ |+++++.+.+.....
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~----~ra~~l~~r~~e~L~~l--Gl~~~l~~~g~~~~~ 77 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFN----PKANTTSARSMEHFRRL--GIADEVRSAGLPVDY 77 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCC----CccccCCHHHHHHHHhc--ChHHHHHhhcCCccc
Confidence 345689999999999999999999999999999998654322 23677999999999999 899999877643211
Q ss_pred -ceeeeeecCCCceeeeccCCCccc----------ccCCC-eEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeC
Q 005770 154 -RINGLVDGISGSWYIKFDTFTPAA----------EKGLP-VTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHG 218 (678)
Q Consensus 154 -~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~ 218 (678)
....+.....+.....+....... ....+ ..+.++|..|+++|.+.+. +..++++++|+++++++
T Consensus 78 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~ 157 (545)
T PRK06126 78 PTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDA 157 (545)
T ss_pred cCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECC
Confidence 000012212222222221110000 00111 2468999999999998763 45799999999999999
Q ss_pred CeEEEEEcC---Cc--EEeccEEEEecCCCchhhhhhc-CCCCccccccEEEEEE-ecCCCCCc-CCcc-eEEEecCceE
Q 005770 219 DKVSVVLEN---GQ--CYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGI-ADFVPADI-ESVG-YRVFLGHKQY 289 (678)
Q Consensus 219 ~~v~v~~~d---g~--~i~a~~vVgADG~~S~VR~~l~-~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~~~~~ 289 (678)
+++++++.+ |+ ++++|+||+|||++|.||+.++ ...+..+.+......+ ........ .... ..++.+++..
T Consensus 158 ~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~ 237 (545)
T PRK06126 158 DGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRR 237 (545)
T ss_pred CeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCcc
Confidence 888887743 54 7899999999999999999984 2333333322211111 10111111 1122 2333444433
Q ss_pred EEEeeCCCCeEEEEEE-EeCCCCCCCCcchhHHHHHHHhccCCh-hHHHHHHcCChhhhhhcccccCCCCccccCCcEEE
Q 005770 290 FVSSDVGAGKMQWYAF-HKEPAGGVDGPEGKKERLLKIFEGWCD-NVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTL 367 (678)
Q Consensus 290 ~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~L 367 (678)
.++.+..... .|.+. ........ ....+.+.+.+..... .+. ........|. .....+.+|+.|||+|
T Consensus 238 ~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~w~-~~~~~a~~~~~gRv~L 307 (545)
T PRK06126 238 GVLVAIDGRD-EWLFHQLRGGEDEF---TIDDVDARAFVRRGVGEDID-----YEVLSVVPWT-GRRLVADSYRRGRVFL 307 (545)
T ss_pred EEEEEECCCC-eEEEEEecCCCCCC---CCCHHHHHHHHHHhcCCCCC-----eEEEeecccc-hhheehhhhccCCEEE
Confidence 3333333332 45543 22111111 1112222222221110 000 0000111222 2234567899999999
Q ss_pred EccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh
Q 005770 368 LGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKA 447 (678)
Q Consensus 368 vGDAAH~~~P~~GqG~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~ 447 (678)
+|||||.|+|++|||||+||+||.+|+|+|+.++++. +.+++|++|+++|+|++..++..++.........
T Consensus 308 ~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~-------~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~~~~-- 378 (545)
T PRK06126 308 AGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGW-------AGPALLDSYEAERRPIAARNTDYARRNADALGSF-- 378 (545)
T ss_pred echhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCC-------CcHHHHhhhHHHhhHHHHHHHHHHHHHHHHhccc--
Confidence 9999999999999999999999999999999987653 2378999999999999999887765432211100
Q ss_pred hhcCCCCcccccccccccCCCCcc---hhhHHhhhh---h---hhhHhhhccccccceeeecccccccccCCCCCCcccc
Q 005770 448 YLGVGLGPLSFLTKFRIPHPGRVG---GRFFIDLAM---P---LMLSWVLGGNSIGQLVISYDHICISSKLEGRSPCCKL 518 (678)
Q Consensus 448 ~~~~~~~~~~~~r~~~l~~~~~~~---~~~~~~~~~---~---~~~~~~~~~~y~~~~~i~~~~s~~~~~~~~~~~~~~~ 518 (678)
..+ -.+....... .+.+.+.+. . ...+..+||+|.+++++.++..+-.. ........
T Consensus 379 -----~~~------~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~Y~~~~~~~~~~~~~~~---~~~~~~~~ 444 (545)
T PRK06126 379 -----PVP------PEIEDDGPAGDAARRKVGDALSEHARQEFNSPGITLGYRYDGSPIIVPDGTPPPP---DDPGVYVP 444 (545)
T ss_pred -----ccc------hhhccCChhHHHHHHHHHHHHhhccccccccceeeecceecCCceecCCCCCCCC---Cccccccc
Confidence 000 0000000000 011111000 0 11346689999999999766332110 00001122
Q ss_pred Ccccch-hhhhhhcCChhhhHhcCCceEEEecCCCCCcCcceeeecccCC---CcEEeCCCC--CCCCCcceEEeCCCcc
Q 005770 519 SDKASD-NLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHEN---EPYLIGSES--HEDFSRTSIVIPSAQV 592 (678)
Q Consensus 519 ~~~pG~-~p~~~~~~g~~~~~~~~~~~~Ll~~~~~~~~~~~l~~~~~~~~---~~~~iGR~~--~~~~~~~~~~~~~~~v 592 (678)
..+||+ +||+||.++.++.|+++.+|+||.+.+...-.+.........+ ..+.||... ...+.++-++-||..|
T Consensus 445 ~~~pG~r~ph~~l~~~~s~~dl~g~~f~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~avLvRPD~~v 524 (545)
T PRK06126 445 SACPGGRAPHAWLSDGRSLYDLFGPGFTLLRFGDAAVDVAPLEAAAAALGVPLAVVDLPGPEAAALYEADLVLVRPDQHV 524 (545)
T ss_pred CCCCCcCCCCeeecCCcchHHhcCCceEEEecCCCcHHHHHHHHHHHHhCCceEEEEeCcHHhHhhccCCEEEECCCCce
Confidence 348999 9999999999999999999999998754211111111111112 234454321 1122235566688888
Q ss_pred ccc
Q 005770 593 SKM 595 (678)
Q Consensus 593 Sr~ 595 (678)
.|+
T Consensus 525 awr 527 (545)
T PRK06126 525 AWR 527 (545)
T ss_pred eec
Confidence 775
No 3
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-43 Score=392.28 Aligned_cols=408 Identities=19% Similarity=0.260 Sum_probs=254.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~ 154 (678)
|..+||+||||||+||++|+.|+++|++|+|+||.+.+.... .+..++++++++|+++ |+++++.+.+.....
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~----ra~~l~~~~~e~l~~l--Gl~~~l~~~~~~~~~- 73 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGS----RGKGIQPRTQEVFDDL--GVLDRVVAAGGLYPP- 73 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCc----cceeecHHHHHHHHHc--CcHHHHHhcCccccc-
Confidence 346899999999999999999999999999999986553222 3567999999999999 899999876543221
Q ss_pred eeeeeecCCCceeeeccCC---CcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEE---c
Q 005770 155 INGLVDGISGSWYIKFDTF---TPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVL---E 226 (678)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~---~ 226 (678)
.. ++... +. ....... .......++..+.++|..|+++|.+.+. +..+++++++++++++++++++++ .
T Consensus 74 ~~-~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~ 150 (502)
T PRK06184 74 MR-IYRDD-GS-VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPA 150 (502)
T ss_pred ee-EEeCC-ce-EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCC
Confidence 11 11111 11 1111100 0001122344578999999999998873 346899999999999999998888 5
Q ss_pred CCcEEeccEEEEecCCCchhhhhhc-CCCCccccccEEEEEEecCCCCCcCCcceEEEecCc-eEEEEeeCCCCeEEEEE
Q 005770 227 NGQCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHK-QYFVSSDVGAGKMQWYA 304 (678)
Q Consensus 227 dg~~i~a~~vVgADG~~S~VR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~ 304 (678)
++++++||+||+|||++|.||++++ ...+..+.....+...... .......+..|.... ..+..+|..++.. |.+
T Consensus 151 ~~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~ 227 (502)
T PRK06184 151 GEETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSL--TGLDRDAWHQWPDGDMGMIALCPLPGTDL-FQI 227 (502)
T ss_pred CeEEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEe--ecCCCcceEEccCCCCcEEEEEEccCCCe-EEE
Confidence 5678999999999999999999984 3334444331122211111 112223344454443 4555566655432 333
Q ss_pred EEeCCCCCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhh
Q 005770 305 FHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGC 384 (678)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n 384 (678)
....+.... .....+.+.+.+..+.......+. ...+...+.+. ...+.+|+.|||||+|||||.|+|++|||||
T Consensus 228 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~-~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n 302 (502)
T PRK06184 228 QAPLPPGGE--PDLSADGLTALLAERTGRTDIRLH--SVTWASAFRMN-ARLADRYRVGRVFLAGDAAHVHPPAGGQGLN 302 (502)
T ss_pred EEEcCCCcc--CCCCHHHHHHHHHHhcCCCCccee--eeeeeeccccc-eeEhhhhcCCcEEEeccccccCCCccccccc
Confidence 222222111 122334455554433221000000 00011111111 2235689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccc
Q 005770 385 MAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRI 464 (678)
Q Consensus 385 ~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l 464 (678)
+||+||.+|+|+|+.++++ + .+.+|++|++||+|++..++..++....... . +..
T Consensus 303 ~gi~DA~~LawkLa~vl~g-~-------~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~--~-------------~~~-- 357 (502)
T PRK06184 303 TSVQDAYNLGWKLAAVLAG-A-------PEALLDTYEEERRPVAAAVLGLSTELLDAIK--R-------------GDM-- 357 (502)
T ss_pred chHHHHHHHHHHHHHHHcC-C-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--H-------------HHh--
Confidence 9999999999999998876 2 2689999999999999988876654221110 0 000
Q ss_pred cCCCCcchhhHHhhhhhhhhHhhhccccccceeeecccccccccCCCCCCccccCcccch-hhhhhhc--CC--hhhhHh
Q 005770 465 PHPGRVGGRFFIDLAMPLMLSWVLGGNSIGQLVISYDHICISSKLEGRSPCCKLSDKASD-NLRTWFR--DD--DALERA 539 (678)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~s~~~~~~~~~~~~~~~~~~pG~-~p~~~~~--~g--~~~~~~ 539 (678)
.+ ....++..+.|..|++.....+. ....+||+ +||+|+. ++ .+++|+
T Consensus 358 -----------~~------------~~~~~~~~~~y~~~~~~~~~~~~----~~~~~~G~r~p~~~~~~~~~~~~~l~d~ 410 (502)
T PRK06184 358 -----------RR------------GRDVQQLDLGYRGSSLAVDGPER----TGGLRAGDRAPDAPLLGAAGQPTRLFDL 410 (502)
T ss_pred -----------hc------------ccchhcceeecCCCcccCCCccc----CCCCCCcCCCCCchhccCCCceeeHHHh
Confidence 00 00112233334433332111110 11237999 9999985 34 579999
Q ss_pred cC-CceEEEecCCC
Q 005770 540 MN-GEWFLVPSGSE 552 (678)
Q Consensus 540 ~~-~~~~Ll~~~~~ 552 (678)
++ ++|+|+.+++.
T Consensus 411 ~~~~~~~ll~~~~~ 424 (502)
T PRK06184 411 FRGPHWTLLAFGAG 424 (502)
T ss_pred hCCCcEEEEEecCC
Confidence 96 47999998654
No 4
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=1.4e-43 Score=397.31 Aligned_cols=424 Identities=18% Similarity=0.229 Sum_probs=271.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~ 154 (678)
+..+||+||||||+|+++|+.|+++|++|+|+||.+.+... .+++.++++++++|+++ |+++++.+.+.... .
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~----~ra~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~-~ 80 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDL----PRAVGIDDEALRVLQAI--GLADEVLPHTTPNH-G 80 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC----CceeeeCHHHHHHHHHc--CChhHHHhhcccCC-c
Confidence 45689999999999999999999999999999998654322 23678999999999999 88998877653222 2
Q ss_pred eeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCeEEEEEc--CC-
Q 005770 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE--NG- 228 (678)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~v~v~~~--dg- 228 (678)
.. +.+ ..+.....++. ......+++..+.+.|..++++|.+.+. +..++++++|+++++++++|+++++ +|
T Consensus 81 ~~-~~~-~~g~~~~~~~~-~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~ 157 (538)
T PRK06183 81 MR-FLD-AKGRCLAEIAR-PSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQ 157 (538)
T ss_pred eE-EEc-CCCCEEEEEcC-CCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCC
Confidence 21 222 22333334432 1112334555578899999999998763 4569999999999999999999887 46
Q ss_pred -cEEeccEEEEecCCCchhhhhhcC-CCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEEE
Q 005770 229 -QCYAGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFH 306 (678)
Q Consensus 229 -~~i~a~~vVgADG~~S~VR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 306 (678)
++++|||||||||++|.||+.++. .....|........+ ..............+..++..++.++..++...|.+..
T Consensus 158 ~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~ 236 (538)
T PRK06183 158 RETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDV-LIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFML 236 (538)
T ss_pred EEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEE-ecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEe
Confidence 479999999999999999999842 233334332221111 11111111112334555656666667777776775544
Q ss_pred eCCCCCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhccccc--CCCCccccCCcEEEEccccCCCCCCCcchhh
Q 005770 307 KEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYD--RTPIFTWGRGRVTLLGDSVHAMQPNLGQGGC 384 (678)
Q Consensus 307 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n 384 (678)
..... . ......+.+.+.+..|... .....+.....+. ...+.+|+.|||+|+|||||.|+|++|||||
T Consensus 237 ~~~~~-~-~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n 307 (538)
T PRK06183 237 LPGET-E-EQLASPENVWRLLAPWGPT-------PDDAELIRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMN 307 (538)
T ss_pred CCCCC-h-hhcCCHHHHHHHHHhhCCC-------CcceEEEEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchh
Confidence 22111 1 1112334555555554210 0000111111121 2345689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccc
Q 005770 385 MAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRI 464 (678)
Q Consensus 385 ~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l 464 (678)
+||+||.+|+|+|+.++++. ..+.+|++|+++|+|++..++..+..+.. ++.........+|+..+
T Consensus 308 ~gi~DA~~La~kLa~~~~g~-------~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~-------~~~~~~~~~~~~R~~~l 373 (538)
T PRK06183 308 SGIRDAANLAWKLAAVLRGR-------AGDALLDTYEQERRPHARAMIDLAVRLGR-------VICPTDRLAAALRDAVL 373 (538)
T ss_pred hhHHHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hccCCCHHHHHHHHHHH
Confidence 99999999999999887653 23789999999999999988877654332 23333444556666555
Q ss_pred cCCCCcch--hhHHhhhhhhhhHhhhccccccceeeecccccccccCCCCCCccccCcccch-hhhhhhcC--C-hhhhH
Q 005770 465 PHPGRVGG--RFFIDLAMPLMLSWVLGGNSIGQLVISYDHICISSKLEGRSPCCKLSDKASD-NLRTWFRD--D-DALER 538 (678)
Q Consensus 465 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~s~~~~~~~~~~~~~~~~~~pG~-~p~~~~~~--g-~~~~~ 538 (678)
......+. +++++ ..+++.+.|+.|++.... +. ....+|+ +|+.++.. + ..+.|
T Consensus 374 ~~~~~~~~~~~~~~~--------------~~~~~~~~y~~~~~~~~~-~~-----~~~~~G~~~p~~~~~~~~~~~~~~d 433 (538)
T PRK06183 374 RALNYLPPLKRYVLE--------------MRFKPMPRLTGGAVVREG-EA-----KHSPVGTLFPQPRVELGGGDRGLLD 433 (538)
T ss_pred HhhhcCcchhhhhhh--------------ccCCCCCcccccccccCc-cc-----CCCCcccCcCCCeeEcCCCCcccch
Confidence 43332221 11111 133455556655533111 11 1226899 99988853 2 34455
Q ss_pred -hcCCceEEEecCCC
Q 005770 539 -AMNGEWFLVPSGSE 552 (678)
Q Consensus 539 -~~~~~~~Ll~~~~~ 552 (678)
+.+.+|+||.++..
T Consensus 434 ~~~~~~~~ll~~~~~ 448 (538)
T PRK06183 434 DVLGPGFAVLGWGCD 448 (538)
T ss_pred hccCCceEEEEecCC
Confidence 66778999998544
No 5
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=6.5e-43 Score=393.04 Aligned_cols=427 Identities=16% Similarity=0.160 Sum_probs=258.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~ 154 (678)
...+||+||||||+||++|+.|+++|++|+|+||++..... .+++.++++++++|+++ |+++++.+.+......
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~----~ra~~l~~~~~~~l~~l--Gl~~~l~~~~~~~~~~ 94 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTG----SRAICFAKRSLEIFDRL--GCGERMVDKGVSWNVG 94 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCC----CeEEEEcHHHHHHHHHc--CCcHHHHhhCceeece
Confidence 35689999999999999999999999999999998644322 23678999999999999 8888887765432111
Q ss_pred eeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCeEEEEEc--CCc
Q 005770 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE--NGQ 229 (678)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~v~v~~~--dg~ 229 (678)
..+... .....++... ......+....+.|..|+++|.+.+. ...++++++|++++++++++++++. +|+
T Consensus 95 -~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~ 169 (547)
T PRK08132 95 -KVFLRD---EEVYRFDLLP-EPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGP 169 (547)
T ss_pred -eEEeCC---CeEEEecCCC-CCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCc
Confidence 111111 1222222111 11122333467899999999998763 3468899999999999999887764 454
Q ss_pred -EEeccEEEEecCCCchhhhhhc-CCCCccccccEEEEEEecCCCCCcCCcceEEEe---cCceEEEEeeCCCCeEEEEE
Q 005770 230 -CYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFL---GHKQYFVSSDVGAGKMQWYA 304 (678)
Q Consensus 230 -~i~a~~vVgADG~~S~VR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~w~~ 304 (678)
+++||+||+|||++|.||+.++ ......|.....+..+. ...+.....+..+. .++..++..+.+.+.+.+.+
T Consensus 170 ~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (547)
T PRK08132 170 YTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVK--MKADFPTERWFWFDPPFHPGQSVLLHRQPDNVWRIDF 247 (547)
T ss_pred EEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEE--ecCCCCCeeeEEEeccCCCCcEEEEEeCCCCeEEEEE
Confidence 7999999999999999999984 33344443322222111 11122222222221 23334444454444333222
Q ss_pred EEeCCCCCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhccc--ccCCCCccccCCcEEEEccccCCCCCCCcch
Q 005770 305 FHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDI--YDRTPIFTWGRGRVTLLGDSVHAMQPNLGQG 382 (678)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG 382 (678)
....... .. .....+.+.+.+ .+.+.......+..... .....+.+|++|||+|+|||||.|+|++|||
T Consensus 248 ~~~~~~~-~~-~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG 318 (547)
T PRK08132 248 QLGWDAD-PE-AEKKPENVIPRV-------RALLGEDVPFELEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARG 318 (547)
T ss_pred ecCCCCC-ch-hhcCHHHHHHHH-------HHHcCCCCCeeEEEEEeeeeeeeeecccccccEEEEecccccCCCccccc
Confidence 2111111 00 011122222222 22221111111111111 1234567899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccc
Q 005770 383 GCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKF 462 (678)
Q Consensus 383 ~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 462 (678)
||+||+||.+|+|+|+.++++. ..+++|++|++||+|+++.++..+.....+ +.........+|+.
T Consensus 319 ~n~gi~DA~~LawkLa~vl~g~-------~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~-------~~~~~~~~~~~r~~ 384 (547)
T PRK08132 319 ANSGIQDADNLAWKLALVLRGR-------APDSLLDSYASEREFAADENIRNSTRSTDF-------ITPKSPVSRLFRDA 384 (547)
T ss_pred ccchHHHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hCCCCHHHHHHHHH
Confidence 9999999999999999998764 237899999999999999887665532221 12222333445554
Q ss_pred cccCCCCcchhhHHhhhhhhhhHhhhccccccceeeecccccccccCCCCCCccccCcccch-hhhhhhc-CC--hhhhH
Q 005770 463 RIPHPGRVGGRFFIDLAMPLMLSWVLGGNSIGQLVISYDHICISSKLEGRSPCCKLSDKASD-NLRTWFR-DD--DALER 538 (678)
Q Consensus 463 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~s~~~~~~~~~~~~~~~~~~pG~-~p~~~~~-~g--~~~~~ 538 (678)
.+......+ +.+..+.. .....++.|.+++++..+ +. ......+||+ +||+|+. +| .+++|
T Consensus 385 ~~~~~~~~~---~~~~~~~~-~~~~~~~~y~~~~~~~~~---------~~--~~~~~~~pG~r~p~~~~~~~~~~~~l~d 449 (547)
T PRK08132 385 VLRLARDHP---FARRLVNS-GRLSVPAVYADSPLNTPD---------GD--AFAGGPVPGAPAPDAPVRADGEPGWLLD 449 (547)
T ss_pred HHhhhcccH---HHHHHHhc-cccccCcccCCCCCCCCc---------cc--ccCCCCCCCCCCCCCcccCCCCceEHHH
Confidence 433322211 11111100 001123444444443221 10 0112237999 9999995 44 58999
Q ss_pred hcCCceEEEecCCC
Q 005770 539 AMNGEWFLVPSGSE 552 (678)
Q Consensus 539 ~~~~~~~Ll~~~~~ 552 (678)
+++.+|+|+.+++.
T Consensus 450 l~g~~f~ll~~~~~ 463 (547)
T PRK08132 450 LLGGGFTLLLFGDD 463 (547)
T ss_pred hcCCCEEEEEecCC
Confidence 99889999998764
No 6
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=4e-43 Score=390.32 Aligned_cols=417 Identities=18% Similarity=0.175 Sum_probs=259.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
++||+||||||+||++|+.|+++|++|+||||.+.+... .+++.++++++++|+++ |+++++.+.+.... ...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~----~ra~~l~~~~~e~l~~l--Gl~~~l~~~~~~~~-~~~ 74 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPY----SKALTLHPRTLEILDMR--GLLERFLEKGRKLP-SGH 74 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC----cceeEecHHHHHHHHhc--CcHHHHHhhccccc-ceE
Confidence 479999999999999999999999999999998765332 23688999999999999 89999887653222 111
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEc--CC-cEE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLE--NG-QCY 231 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~--dg-~~i 231 (678)
+... .+ ...+.. ....+++.+.++|..++++|.+.+. ...+++++++++++++++++++++. +| +++
T Consensus 75 -~~~~-~~--~~~~~~----~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i 146 (493)
T PRK08244 75 -FAGL-DT--RLDFSA----LDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTL 146 (493)
T ss_pred -Eecc-cc--cCCccc----CCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEE
Confidence 1111 01 111111 1123455678999999999988763 3468899999999999999888775 45 479
Q ss_pred eccEEEEecCCCchhhhhhc-CCCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEEEeCCC
Q 005770 232 AGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPA 310 (678)
Q Consensus 232 ~a~~vVgADG~~S~VR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 310 (678)
+||+||+|||++|.||+.++ ...+..+.. ..+.+.... ..........++.+...++.+|..++.+.|.+......
T Consensus 147 ~a~~vVgADG~~S~vR~~lgi~~~g~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~ 223 (493)
T PRK08244 147 TSSYVVGADGAGSIVRKQAGIAFPGTDATF-TAMLGDVVL--KDPPPSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERP 223 (493)
T ss_pred EeCEEEECCCCChHHHHhcCCCccCCCcce-EEEEEEEEe--cCCCCcceeEEEeCCceEEEEECCCCeEEEEEEcCCcc
Confidence 99999999999999999984 233333332 222222111 11111122233455556677788777766654322111
Q ss_pred CCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHHHHH
Q 005770 311 GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 390 (678)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~Da 390 (678)
........+.+++.+.+..+.... +......+...+.+. ...+.+|++|||+|+|||||.++|++|||||+||+||
T Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~-~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA 299 (493)
T PRK08244 224 QVPKDEPVTLEELKTSLIRICGTD---FGLNDPVWMSRFGNA-TRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDA 299 (493)
T ss_pred cccCCCCCCHHHHHHHHHHhhCCC---CCcCCeeEEEecccc-eeeHhhhccCcEEEeecceeccCCccccccccchhhH
Confidence 111111223455555444332210 000011111111111 1345689999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccccCCCCc
Q 005770 391 YQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRV 470 (678)
Q Consensus 391 ~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~ 470 (678)
.+|+|+|+.++++.+ .+.+|++|+++|+|++..++..++.... ++... .+...+|+....+.. .
T Consensus 300 ~~La~~La~~l~g~~-------~~~lL~~Ye~eR~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~R~~~~~~~~-~ 363 (493)
T PRK08244 300 MNLGWKLAAAIKGWA-------PDWLLDSYHAERHPVGTALLRNTEVQTK-------LFDFT-RPGLALRSMLSDLLG-F 363 (493)
T ss_pred HHHHHHHHHHHcCCC-------CchhhhhhHHHHHHHHHHHHHHhHHHHH-------HhcCC-chhHHHHHHHHHHhc-c
Confidence 999999999987632 2689999999999999987765443222 22111 223334443111110 1
Q ss_pred chhhHHhhhhhhhhHhhhccccccceeeecccccccccCCCCCCccccCcccch-hhhhhhc--CC--hhhhHhcCC-ce
Q 005770 471 GGRFFIDLAMPLMLSWVLGGNSIGQLVISYDHICISSKLEGRSPCCKLSDKASD-NLRTWFR--DD--DALERAMNG-EW 544 (678)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~s~~~~~~~~~~~~~~~~~~pG~-~p~~~~~--~g--~~~~~~~~~-~~ 544 (678)
+. +.+. +.+ ..++..+.|+.++.. .+ ...||+ +||+|+. +| ++++|+++. +|
T Consensus 364 ~~--~~~~----~~~------~~~~~~~~Y~~~~~~---~~-------~~~~G~r~p~~~~~~~~~~~~~l~~~~~~~~~ 421 (493)
T PRK08244 364 PE--VNRY----LAG------QISALDVHYEPDAEM---PP-------HPLNGKRLPDLELTLSDGESERLYSLLHKGTF 421 (493)
T ss_pred hH--HHHH----HHH------HHhcCCcccCCCCcc---CC-------CCCCCCCCCCcceecCCCCceeHHHhhcCCeE
Confidence 10 0000 011 122333344422210 01 126899 9999993 55 589999976 59
Q ss_pred EEEecCCCC
Q 005770 545 FLVPSGSEN 553 (678)
Q Consensus 545 ~Ll~~~~~~ 553 (678)
+|+.+++..
T Consensus 422 ~ll~~~~~~ 430 (493)
T PRK08244 422 LLLSFGSEP 430 (493)
T ss_pred EEEEecCCc
Confidence 999987653
No 7
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=6.9e-42 Score=376.19 Aligned_cols=404 Identities=14% Similarity=0.134 Sum_probs=249.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~ 154 (678)
...+||+||||||+||++|+.|+++|++|+|+||.+.+... .++..++++++++|+.+ |+++++...+.....
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~----gra~~l~~~tle~L~~l--Gl~~~l~~~~~~~~~- 75 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEV----GRADALNARTLQLLELV--DLFDELYPLGKPCNT- 75 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCccccc----ccceEeCHHHHHHHHhc--ChHHHHHhhCcccee-
Confidence 34589999999999999999999999999999998755322 23677999999999999 899988765532211
Q ss_pred eeeeeecCCCceeeeccC-CCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCCcEE
Q 005770 155 INGLVDGISGSWYIKFDT-FTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (678)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i 231 (678)
.. ++.. +........ ........++..+.+.|..++++|.+++. +..++++++|++++++++++++++.+|+++
T Consensus 76 ~~-~~~~--g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v 152 (487)
T PRK07190 76 SS-VWAN--GKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERI 152 (487)
T ss_pred EE-EecC--CceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEE
Confidence 11 1111 111111000 00001112334567899999999988763 346899999999999999999988888899
Q ss_pred eccEEEEecCCCchhhhhhc-CCCCccccccEEEE-EEecCCCCCcCC-cceEEEecCceEEEEeeCCCCeEEEEEEEeC
Q 005770 232 AGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYT-GIADFVPADIES-VGYRVFLGHKQYFVSSDVGAGKMQWYAFHKE 308 (678)
Q Consensus 232 ~a~~vVgADG~~S~VR~~l~-~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 308 (678)
+|+|||+|||++|.||++++ ......+....... ...+ .++.. .....+....+.++..|..++...|+...
T Consensus 153 ~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~---~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~-- 227 (487)
T PRK07190 153 QSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVID---TDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRM-- 227 (487)
T ss_pred EeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEc---cCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEc--
Confidence 99999999999999999984 33333332212211 1111 11111 11222323333344445555444333321
Q ss_pred CCCCCCCcchhHHHHHHHhcc-CChhHHHHHHcCChhhhhhcccccCCCCcccc-CCcEEEEccccCCCCCCCcchhhHH
Q 005770 309 PAGGVDGPEGKKERLLKIFEG-WCDNVVDLILATDEEAILRRDIYDRTPIFTWG-RGRVTLLGDSVHAMQPNLGQGGCMA 386 (678)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~grv~LvGDAAH~~~P~~GqG~n~g 386 (678)
.. .....+++.+.+.. ..+.. +......++..+.+. .+.+.+|+ .|||||+|||||.++|++|||||+|
T Consensus 228 ~~-----~~~t~~~~~~~l~~~~~~~~---~~~~~~~w~s~~~~~-~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~g 298 (487)
T PRK07190 228 DT-----KDFTLEQAIAKINHAMQPHR---LGFKEIVWFSQFSVK-ESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTG 298 (487)
T ss_pred CC-----CCCCHHHHHHHHHHhcCCCC---CceEEEEEEEEeeeC-cEehhhcCcCCcEEEEecccccCCCccccchhhh
Confidence 11 11122333332221 11100 000011112222222 24567887 7999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccccC
Q 005770 387 IEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPH 466 (678)
Q Consensus 387 l~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~ 466 (678)
|+||.||+|||+.++++.+ .+.+|++|++||+|+++.++..++.+..... + ......+
T Consensus 299 iqDA~nL~wkLa~v~~g~a-------~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~~-----~---~~~~~~~------- 356 (487)
T PRK07190 299 LADAFNLIWKLNMVIHHGA-------SPELLQSYEAERKPVAQGVIETSGELVRSTK-----Y---SANGTHA------- 356 (487)
T ss_pred HHHHHHHHHHHHHHHcCCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----c---ccCCcCH-------
Confidence 9999999999999988753 3799999999999999988766553221110 0 0000001
Q ss_pred CCCcchhhHHhhhhhhhhHhhhccccccceeeecccccccccCCCCCCccccCcccch-hhhhhhc--CC-hhhhHhcCC
Q 005770 467 PGRVGGRFFIDLAMPLMLSWVLGGNSIGQLVISYDHICISSKLEGRSPCCKLSDKASD-NLRTWFR--DD-DALERAMNG 542 (678)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~s~~~~~~~~~~~~~~~~~~pG~-~p~~~~~--~g-~~~~~~~~~ 542 (678)
+.+++ .......+.++..|.|+++|| +|+ +|++.+. ++ +++++++.+
T Consensus 357 ------~~~~~-------~~~~~~~~~~g~~~~Y~~~~l----------------~G~r~pd~~~~~~~~~~~l~~~~~~ 407 (487)
T PRK07190 357 ------QDYVK-------IVEKRAGYITGMGIRYGEEGL----------------CGSRLFDFEIFQGSEKTRLYSLLDY 407 (487)
T ss_pred ------HHHHH-------HHHHhhhhhcccccccCCCCc----------------cCccCCCCcccCCcccccHHHhhcC
Confidence 11111 011222457788888875442 455 5554442 22 589999966
Q ss_pred -ceEEEecCCCC
Q 005770 543 -EWFLVPSGSEN 553 (678)
Q Consensus 543 -~~~Ll~~~~~~ 553 (678)
.|+||.+++..
T Consensus 408 ~~~~ll~~~~~~ 419 (487)
T PRK07190 408 RKFTLFIFGDCE 419 (487)
T ss_pred CceEEEEecccc
Confidence 59999987653
No 8
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=7.9e-42 Score=386.07 Aligned_cols=429 Identities=14% Similarity=0.182 Sum_probs=257.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHc-CCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~-g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~ 153 (678)
..++||+||||||+||++|+.|+++ |++|+|||+.+.+.. .| .+..++++++++|+++ |+++++.+.+....
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~-~g---rA~gl~prtleiL~~l--Gl~d~l~~~g~~~~- 102 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLE-LG---QADGIACRTMEMFQAF--GFAERILKEAYWIN- 102 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCC-CC---eeeEEChHHHHHHHhc--cchHHHHhhccccc-
Confidence 4578999999999999999999995 999999999865432 22 3678999999999999 89999987654221
Q ss_pred ceeeeeecCC--CceeeeccCC-C-cccccCCCeEEEeCHHHHHHHHHHhcCC----ceEEeCCeEEEEEEeCC---eEE
Q 005770 154 RINGLVDGIS--GSWYIKFDTF-T-PAAEKGLPVTRVISRMTLQQILAKAVGD----EIILNESNVIDFKDHGD---KVS 222 (678)
Q Consensus 154 ~~~~~~~~~~--~~~~~~~~~~-~-~~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~~~~~~~---~v~ 222 (678)
.+. +++... .......... . ......+++ ..++|..++++|.+.+.. ..+++++++++++++++ .|+
T Consensus 103 ~~~-~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~-~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~ 180 (634)
T PRK08294 103 ETA-FWKPDPADPSTIVRTGRVQDTEDGLSEFPH-VIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVT 180 (634)
T ss_pred ceE-EEcCCCccccceeccccccccCCCCCCCcc-EeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEE
Confidence 121 222110 0111100000 0 001112343 688999999999998732 24788999999987653 488
Q ss_pred EEEc------CC--cEEeccEEEEecCCCchhhhhhc-CCCCccccccEEEEEEecCCCCCcCCc--ceEEEecCceEEE
Q 005770 223 VVLE------NG--QCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESV--GYRVFLGHKQYFV 291 (678)
Q Consensus 223 v~~~------dg--~~i~a~~vVgADG~~S~VR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 291 (678)
++++ +| ++++|||||||||++|.||++++ ...+..+.....+..+... .++... ...++..+.+.++
T Consensus 181 v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~--~~~p~~~~~~~~~~~~~g~~~ 258 (634)
T PRK08294 181 VTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAV--TDFPDIRLKCAIQSASEGSIL 258 (634)
T ss_pred EEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEc--cCCCCcceEEEEecCCCceEE
Confidence 8885 35 58999999999999999999994 3344444433322222111 112211 1122334445666
Q ss_pred EeeCCCCe-EEEEEEEeC-C-CCCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhccccc--CCCCccc------
Q 005770 292 SSDVGAGK-MQWYAFHKE-P-AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYD--RTPIFTW------ 360 (678)
Q Consensus 292 ~~~~~~~~-~~w~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~------ 360 (678)
.+|..++. ++|+..... + .........+.+++.+.+..+.... ......+..|.++. .+.+.+|
T Consensus 259 ~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~-----~~~~~~v~w~s~y~i~~r~a~~f~~~~~~ 333 (634)
T PRK08294 259 LIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPY-----TLDVKEVAWWSVYEVGQRLTDRFDDVPAE 333 (634)
T ss_pred EEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCC-----CCceeEEeEEecccccceehhhccccccc
Confidence 66777664 333332211 1 1111112234455555443321110 00000111222222 1222233
Q ss_pred ----cCCcEEEEccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 005770 361 ----GRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 436 (678)
Q Consensus 361 ----~~grv~LvGDAAH~~~P~~GqG~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~ 436 (678)
+.|||||+|||||.++|.+|||||+||+||.||+|+|+.++++. +.+++|++|++||+|+++.++++++
T Consensus 334 ~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~-------a~~~lL~tYe~ERrp~a~~li~~~~ 406 (634)
T PRK08294 334 EAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGR-------SPPELLHTYSAERQAIAQELIDFDR 406 (634)
T ss_pred ccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999998764 2378999999999999998887765
Q ss_pred HHHHHHhHhhhhhcCCCCcccccccccccCCCCcchhhHHhhhhhhhhHhhhccccccceeeecccccccccCCCCCCcc
Q 005770 437 SAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSIGQLVISYDHICISSKLEGRSPCC 516 (678)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~s~~~~~~~~~~~~~ 516 (678)
....+. ...... . .. .....+.+. +..+..+.++..+.|..|+|+....... .
T Consensus 407 ~~~~l~-------~~~~~~-~-------~~---~~~~~~~~~-------~~~~~~~~sG~~~~Y~~s~l~~~~~~~~--~ 459 (634)
T PRK08294 407 EWSTMM-------AAPPKE-G-------GG---VDPAELQDY-------FVKHGRFTAGTATHYAPSLLTGEATHQD--L 459 (634)
T ss_pred HHHHHh-------ccCCcc-c-------cc---cCHHHHHHH-------HHHhhhhhcccCcccCCccccCCCCchh--h
Confidence 433222 111100 0 00 001111111 1112346777888888888774321110 0
Q ss_pred ccCcccch-hhhhhh---cCC--hhhhHhc--CCceEEEecCCCC
Q 005770 517 KLSDKASD-NLRTWF---RDD--DALERAM--NGEWFLVPSGSEN 553 (678)
Q Consensus 517 ~~~~~pG~-~p~~~~---~~g--~~~~~~~--~~~~~Ll~~~~~~ 553 (678)
...-.||. +|.+.+ .|+ ..+++.+ .+.|.|+.|++..
T Consensus 460 ~~~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~ 504 (634)
T PRK08294 460 ATGFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAA 504 (634)
T ss_pred ccCCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCC
Confidence 11125777 666655 355 3455555 4469999998764
No 9
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=4e-42 Score=378.57 Aligned_cols=407 Identities=19% Similarity=0.186 Sum_probs=256.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~ 154 (678)
|..+||+||||||+|+++|+.|+++|++|+|+|+.+.+... + .++..++++++++|+++ |+++++.+.+.....
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~-~--~Ra~~l~~~s~~~L~~l--Gl~~~l~~~~~~~~~- 74 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELV-G--SRAGGLHARTLEVLDQR--GIADRFLAQGQVAQV- 74 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC-C--cceeeECHHHHHHHHHc--CcHHHHHhcCCcccc-
Confidence 34589999999999999999999999999999998654211 1 12567999999999999 899998765432111
Q ss_pred eeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCCcEEe
Q 005770 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (678)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~ 232 (678)
..+ . ...++... ....+++.+.+.|..|+++|.+.+. +..++++++|++++++++++.+++.+|++++
T Consensus 75 -~~~-----~--~~~~~~~~--~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~ 144 (488)
T PRK06834 75 -TGF-----A--ATRLDISD--FPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLR 144 (488)
T ss_pred -cee-----e--eEeccccc--CCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEE
Confidence 000 0 11111110 1122355678899999999998774 3468999999999999999999998888999
Q ss_pred ccEEEEecCCCchhhhhhc-CCCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCC-CCeEEEEEEEeCCC
Q 005770 233 GDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVG-AGKMQWYAFHKEPA 310 (678)
Q Consensus 233 a~~vVgADG~~S~VR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~ 310 (678)
||+||+|||++|.||+.++ ...+..|.... +...... ..... +..+..+...+...+.. ++.+.+.+.....
T Consensus 145 a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~-~~~dv~~--~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~- 218 (488)
T PRK06834 145 AQYLVGCDGGRSLVRKAAGIDFPGWDPTTSY-LIAEVEM--TEEPE--WGVHRDALGIHAFGRLEDEGPVRVMVTEKQV- 218 (488)
T ss_pred eCEEEEecCCCCCcHhhcCCCCCCCCcceEE-EEEEEEe--cCCCC--cceeeCCCceEEEeccCCCCeEEEEEecCCC-
Confidence 9999999999999999984 44455555422 2221111 11111 11222333333333443 4443333222111
Q ss_pred CCCCCcchhHHHHHHHhccCCh-hHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHHHH
Q 005770 311 GGVDGPEGKKERLLKIFEGWCD-NVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIED 389 (678)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~D 389 (678)
... ...+.+++.+.+..... .+. .....++..+.. ....+.+|+.|||+|+|||||.|+|++|||||+||+|
T Consensus 219 -~~~-~~~~~~~~~~~l~~~~g~~~~----~~~~~~~~~~~~-~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~D 291 (488)
T PRK06834 219 -GAT-GEPTLDDLREALIAVYGTDYG----IHSPTWISRFTD-MARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQD 291 (488)
T ss_pred -CCC-CCCCHHHHHHHHHHhhCCCCc----cccceeEEeccc-cceecccccCCcEEEEeeccccCCccccccccccHHH
Confidence 111 11122333333322111 110 011111111111 1245678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccccCCCC
Q 005770 390 GYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGR 469 (678)
Q Consensus 390 a~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ 469 (678)
|.||+|+|+.++++. +.+.+|++|++||+|++..++..+..+. .++. .......+|+..+.+...
T Consensus 292 A~nLawkLa~vl~g~-------~~~~lLd~Ye~eRrp~~~~~~~~t~~~~-------~~~~-~~~~~~~lR~~~~~~~~~ 356 (488)
T PRK06834 292 AVNLGWKLAQVVKGT-------SPESLLDTYHAERHPVAARVLRNTMAQV-------ALLR-PDDRTEALRDIVAELLGM 356 (488)
T ss_pred HHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hhhc-CChHHHHHHHHHHHHhcC
Confidence 999999999998764 2478999999999999998876554322 1222 344456777766544433
Q ss_pred cch-hhHHhhhhhhhhHhhhccccccceeeecccccccccCCCCCCccccCcccch-hhhhhhc--CC-hhhhHhcCC-c
Q 005770 470 VGG-RFFIDLAMPLMLSWVLGGNSIGQLVISYDHICISSKLEGRSPCCKLSDKASD-NLRTWFR--DD-DALERAMNG-E 543 (678)
Q Consensus 470 ~~~-~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~s~~~~~~~~~~~~~~~~~~pG~-~p~~~~~--~g-~~~~~~~~~-~ 543 (678)
.+. +.+++. .++..+.|+. +... ..+|+ +|+.++. ++ +++++++.. +
T Consensus 357 ~~~~~~~~~~--------------~~g~~~~y~~--------~~~~-----~~~G~~~p~~~~~~~~~~~~l~~~~~~~~ 409 (488)
T PRK06834 357 DEPRKRIAAM--------------MSGLDIHYDL--------GEGH-----PLLGRRMPDLDLVTADGPRRVFTLLHNAR 409 (488)
T ss_pred cHHHHHHHHH--------------HhcCCcccCC--------CCCC-----CCCcCCCCCcccccCCCceeHHHHhcCCe
Confidence 221 222222 2334444531 1000 14688 8887773 23 579999966 5
Q ss_pred eEEEecCCC
Q 005770 544 WFLVPSGSE 552 (678)
Q Consensus 544 ~~Ll~~~~~ 552 (678)
|+||.+++.
T Consensus 410 ~~ll~~~~~ 418 (488)
T PRK06834 410 PVLLNLGAP 418 (488)
T ss_pred eEEEecCCC
Confidence 999988654
No 10
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=3.5e-42 Score=372.76 Aligned_cols=378 Identities=17% Similarity=0.202 Sum_probs=240.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcc--cccceeeChhHHHHHHhcChhHHHHHHHhcccccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQ--YRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~--~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~ 153 (678)
..+||+||||||+|+++|+.|+++|++|+|+|+.+.+....+. ..+...++++++++|+++ |+++++.+.+.....
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~l--Gl~~~~~~~~~~~~~ 79 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRL--GVWQDILARRASCYH 79 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHc--CCchhhhhhcCcccc
Confidence 4589999999999999999999999999999998764332221 113456899999999999 899988765432222
Q ss_pred ceeeeeecCCCceeeeccCCCcccccCCC-eEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCeEEEEEcCCc
Q 005770 154 RINGLVDGISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQ 229 (678)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~v~v~~~dg~ 229 (678)
.+. +++... .....++. ...+.+ .++.++|..|++.|.+.+. +..++++++|++++++++++++++.+|+
T Consensus 80 ~~~-~~~~~~-~~~~~~~~----~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~ 153 (400)
T PRK08013 80 GME-VWDKDS-FGRIAFDD----QSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGS 153 (400)
T ss_pred EEE-EEeCCC-CceEEEcc----cccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCC
Confidence 222 233211 11122221 112332 3578999999999998873 3468899999999999999999999999
Q ss_pred EEeccEEEEecCCCchhhhhhc-CCCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCe-EEEEEEEe
Q 005770 230 CYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFHK 307 (678)
Q Consensus 230 ~i~a~~vVgADG~~S~VR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~~~ 307 (678)
+++|||||||||++|.||+.++ ......|.+.. +....... .......+..|.+.+ .+..+|..++. ..|++...
T Consensus 154 ~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~-~~~~v~~~-~~~~~~~~~~~~~~g-~~~~~p~~~~~~~~~~~~~~ 230 (400)
T PRK08013 154 MLTARLVVGADGANSWLRNKADIPLTFWDYQHHA-LVATIRTE-EPHDAVARQVFHGDG-ILAFLPLSDPHLCSIVWSLS 230 (400)
T ss_pred EEEeeEEEEeCCCCcHHHHHcCCCccccccCcEE-EEEEEecc-CCCCCEEEEEEcCCC-CEEEEECCCCCeEEEEEEcC
Confidence 9999999999999999999994 33445565533 33222211 111222344555554 44455665443 23333221
Q ss_pred CCCCCCCCcchhHHHHHHHhcc-CChhHHHHHHcCCh-hhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhH
Q 005770 308 EPAGGVDGPEGKKERLLKIFEG-WCDNVVDLILATDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 385 (678)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ 385 (678)
.... ........+.+.+.+.. |. ..+..... .....+.+.. ..+.+|+.|||+|+|||||.|+|++|||||+
T Consensus 231 ~~~~-~~~~~~~~~~~~~~l~~~~~----~~l~~~~~~~~~~~~~l~~-~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ 304 (400)
T PRK08013 231 PEEA-QRMQQAPEEEFNRALAIAFD----NRLGLCELESERQVFPLTG-RYARQFAAHRLALVGDAAHTIHPLAGQGVNL 304 (400)
T ss_pred HHHH-HHHHcCCHHHHHHHHHHHHh----HhhCceEecCCccEEecce-eecccccCCcEEEEechhhcCCccccCchhh
Confidence 1000 00000111222222211 10 01110100 0001112222 2467899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCccccccccccc
Q 005770 386 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 465 (678)
Q Consensus 386 gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 465 (678)
||+||.+|+|+|..++..+. +.....+|++|+++|++++..++..++. +..+|.....+...+|+..+.
T Consensus 305 gi~Da~~La~~L~~~~~~~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~R~~~l~ 373 (400)
T PRK08013 305 GFMDAAELIAELRRLHRQGK----DIGQHLYLRRYERSRKHSAALMLAGMQG-------FRDLFAGNNPAKKLLRDIGLK 373 (400)
T ss_pred hHHHHHHHHHHHHHHHhcCC----CcccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHHH
Confidence 99999999999998764321 1122468999999999999877654432 334455566677888888877
Q ss_pred CCCCcch--hhHHhhhhh
Q 005770 466 HPGRVGG--RFFIDLAMP 481 (678)
Q Consensus 466 ~~~~~~~--~~~~~~~~~ 481 (678)
+.+..+. +++++.+++
T Consensus 374 ~~~~~~~~~~~~~~~~~g 391 (400)
T PRK08013 374 LADTLPGVKPQLIRQAMG 391 (400)
T ss_pred HHhhCHHHHHHHHHHHcc
Confidence 6655543 555555554
No 11
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=4.3e-42 Score=368.72 Aligned_cols=363 Identities=17% Similarity=0.164 Sum_probs=242.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
+||+||||||+|+++|+.|++.|++|+|+|+.+..........+++.++++++++|+++ |+++.+.+.+. ....+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--Gl~~~l~~~~~-~~~~~~- 77 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSI--DIWEELEKFVA-EMQDIY- 77 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHC--CcHHHHHhhcC-CCcEEE-
Confidence 68999999999999999999999999999987532211111124678999999999999 89988866542 222222
Q ss_pred eeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCC---ceEEeCCeEEEEEEeCCeEEEEEcCCcEEecc
Q 005770 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGD 234 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~ 234 (678)
+++. .+.....++.. ...++++.++|..|++.|.+.+.. ..++++++++++.+++++++++++++ +++||
T Consensus 78 ~~~~-~g~~~~~~~~~-----~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~ad 150 (374)
T PRK06617 78 VVDN-KASEILDLRND-----ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCN 150 (374)
T ss_pred EEEC-CCceEEEecCC-----CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeC
Confidence 2332 23333444321 123357899999999999998733 45788999999999999999999876 89999
Q ss_pred EEEEecCCCchhhhhhcCC-CCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCe-EEEEEEEeCCCCC
Q 005770 235 LLIGADGIWSKVRKNLFGP-QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFHKEPAGG 312 (678)
Q Consensus 235 ~vVgADG~~S~VR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~~~~~~~~ 312 (678)
+||||||.+|.||+.++.. ....| + .++...... ........++.|...+. +..+|..++. ..+++...... .
T Consensus 151 lvIgADG~~S~vR~~l~~~~~~~~y-~-~~~~~~v~~-~~~~~~~~~~~~~~~g~-~~~lPl~~~~~~~~vw~~~~~~-~ 225 (374)
T PRK06617 151 LLIICDGANSKVRSHYFANEIEKPY-Q-TALTFNIKH-EKPHENCAMEHFLPLGP-FALLPLKDQYASSVIWSTSSDQ-A 225 (374)
T ss_pred EEEEeCCCCchhHHhcCCCcccccC-C-eEEEEEEec-cCCCCCEEEEEecCCCC-EEEeECCCCCeEEEEEeCCHHH-H
Confidence 9999999999999998433 34556 2 444433321 11222234555555554 4445666553 22332221100 0
Q ss_pred CCCcchhHHHHHHHhccCChhHHHHHHcCC-hhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHHHHHH
Q 005770 313 VDGPEGKKERLLKIFEGWCDNVVDLILATD-EEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGY 391 (678)
Q Consensus 313 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~Da~ 391 (678)
........+.+.+.+..... ..+.... ......+++... .+.+|+.|||+|+|||||.|+|++|||+|+||+||.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~l~~~-~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~ 301 (374)
T PRK06617 226 ALIVNLPVEEVRFLTQRNAG---NSLGKITIDSEISSFPLKAR-IANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIE 301 (374)
T ss_pred HHHHcCCHHHHHHHHHHhhc---hhcCceeeccceeEEEeeee-eccceecCCEEEEEcccccCCCCccccHHHHHHHHH
Confidence 00000001222222211111 1111111 111223344433 567899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccccCCCCcc
Q 005770 392 QLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG 471 (678)
Q Consensus 392 ~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 471 (678)
+|++.|.. ..+|++|+++|++++..++.+++. +..+|.+...++..+|+.++...+..+
T Consensus 302 ~La~~L~~--------------~~~L~~Ye~~R~~~~~~~~~~t~~-------l~~~f~~~~~~~~~~R~~~l~~~~~~~ 360 (374)
T PRK06617 302 ILSMIVSN--------------NGTLQEYQKLRQEDNFIMYKLTDE-------LNNIFSNYSKNLRCLRQIGFKVINNFK 360 (374)
T ss_pred HHHHHHcC--------------cchHHHHHHHHhHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHHHHHhcCH
Confidence 99998831 258999999999999877665543 445677777889999999999888877
Q ss_pred h--hhHHhhhhh
Q 005770 472 G--RFFIDLAMP 481 (678)
Q Consensus 472 ~--~~~~~~~~~ 481 (678)
+ +++++++||
T Consensus 361 ~~k~~~~~~~~g 372 (374)
T PRK06617 361 PIKNLITSYAMG 372 (374)
T ss_pred HHHHHHHHHhcC
Confidence 4 788887765
No 12
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=6.6e-42 Score=368.55 Aligned_cols=362 Identities=25% Similarity=0.290 Sum_probs=240.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
.+||+||||||+||++|+.|+++|++|+|+|+.+......+ +++.++++++++|+++ |+.+.+...+........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~---r~~~l~~~~~~~L~~l--G~~~~i~~~~~~~~~~~~ 76 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG---RGIALSPNALRALERL--GLWDRLEALGVPPLHVMV 76 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCc---eeeeecHhHHHHHHHc--CChhhhhhccCCceeeEE
Confidence 57999999999999999999999999999999833333332 4788999999999999 676777776543332222
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCeEEEEEc-CCcEEe
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE-NGQCYA 232 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~v~v~~~-dg~~i~ 232 (678)
+.++.. ....++... ....+.++++.|..|.+.|.+++. +..++++++|+.++++++.++++++ ||++++
T Consensus 77 -~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~ 150 (387)
T COG0654 77 -VDDGGR--RLLIFDAAE---LGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLD 150 (387)
T ss_pred -EecCCc--eeEEecccc---cCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEe
Confidence 222211 233443221 122555789999999999999883 2479999999999999999999999 999999
Q ss_pred ccEEEEecCCCchhhhhhc-CCCCc-cccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCC--CCeEEEEEEEeC
Q 005770 233 GDLLIGADGIWSKVRKNLF-GPQEA-IYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVG--AGKMQWYAFHKE 308 (678)
Q Consensus 233 a~~vVgADG~~S~VR~~l~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~w~~~~~~ 308 (678)
|||||||||.+|.||+.++ ..... .|.+ .++....... .+.....+..|...+ .+...|.+ .....|+.....
T Consensus 151 a~llVgADG~~S~vR~~~~~~~~~~~~y~~-~~l~~~~~~~-~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~ 227 (387)
T COG0654 151 ADLLVGADGANSAVRRAAGIAEFSGRDYGQ-TALVANVEPE-EPHEGRAGERFTHAG-PFALLPLPDNRSSVVWSLPPGP 227 (387)
T ss_pred cCEEEECCCCchHHHHhcCCCCccCCCCCc-eEEEEEeecC-CCCCCeEEEEecCCC-ceEEEecCCCceeEEEECChhh
Confidence 9999999999999999996 33333 5654 3333222221 233334444444444 44444555 334445432211
Q ss_pred CCCCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHHH
Q 005770 309 PAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIE 388 (678)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~ 388 (678)
.... .....+.+...+....+.... +..........+.......+.+|..+||+|+|||||.|||++|||+|+||+
T Consensus 228 ~~~~---~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~ 303 (387)
T COG0654 228 AEDL---QGLSDEEFLRELQRRLGERDP-LGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALE 303 (387)
T ss_pred HHHH---hcCCHHHHHHHHHHhcCcccc-cceEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhh
Confidence 1100 111112222211111111100 111111111111111234556889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccccCCC
Q 005770 389 DGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPG 468 (678)
Q Consensus 389 Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~ 468 (678)
||.+|+++|+.+.+.+ .+ ..+|+.|+++|++++..++.++.. +...|.....+.+.+|+..+....
T Consensus 304 Da~~La~~L~~~~~~~------~~-~~~L~~Y~~~R~~~~~~~~~~s~~-------~~~~~~~~~~~~~~~r~~~l~~~~ 369 (387)
T COG0654 304 DAAALAEALAAAPRPG------AD-AAALAAYEARRRPRAEAIQKLSRA-------LGRLFSADGPFARFLRNLGLRLLD 369 (387)
T ss_pred hHHHHHHHHHHHhhcC------cc-HHHHHHHHHhhhhHHHHHHHHHHH-------HhhhhccCCcHHHHHHHHHHHhhc
Confidence 9999999999987642 11 799999999999999988776652 334566777788888888876654
Q ss_pred Cc
Q 005770 469 RV 470 (678)
Q Consensus 469 ~~ 470 (678)
..
T Consensus 370 ~~ 371 (387)
T COG0654 370 RL 371 (387)
T ss_pred cC
Confidence 43
No 13
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=357.17 Aligned_cols=354 Identities=30% Similarity=0.445 Sum_probs=251.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
++|+||||||+|+++|+.|+++|++|+|+||++.+... + .++.++++++++|+.+ |+++.+...+... ..+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~-g---~gi~l~~~~~~~L~~~--gl~~~~~~~~~~~-~~~~- 72 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEV-G---AGIGIGDNVIKKLGNH--DLAKGIKNAGQIL-STMN- 72 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccccc-c---cceeeChHHHHHHHhc--ChHHHHHhcCCcc-ccee-
Confidence 48999999999999999999999999999998765322 2 3678999999999999 7888887654321 1221
Q ss_pred eeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEE
Q 005770 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLI 237 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vV 237 (678)
+.+. .+.....+.. . ..+..+.++|..|+++|.+.+....++++++|++++++++++++++++|+++++|+||
T Consensus 73 ~~~~-~g~~~~~~~~-----~-~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vi 145 (373)
T PRK06753 73 LLDD-KGTLLNKVKL-----K-SNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCI 145 (373)
T ss_pred EEcC-CCCEEeeccc-----c-cCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEE
Confidence 2221 2222221111 1 1123578999999999999987667899999999999899999999999999999999
Q ss_pred EecCCCchhhhhhcCCCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEEEeCCCCCCCCcc
Q 005770 238 GADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPE 317 (678)
Q Consensus 238 gADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 317 (678)
||||.+|.||+.++......|.+..++.++.............. ++...+.++.+|..++...|+..............
T Consensus 146 gadG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T PRK06753 146 GADGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKE-YWGTKGRFGIVPLLNNQAYWFITINAKERDPKYSS 224 (373)
T ss_pred ECCCcchHHHHHhCCCCCceEcceEEEEEEeccccccCccceEE-EEcCCCEEEEEEcCCCeEEEEEEeccccCCccccc
Confidence 99999999999986544556666666666543221111122223 33444455666777777778765432221111122
Q ss_pred hhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHHHHHHHHHHHH
Q 005770 318 GKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 397 (678)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~Da~~La~~L 397 (678)
...+.+.+.+..|.+.+.+.+.......+..+.++...+..+|..+||+|+|||||.|+|+.|||+|+||+||..|++.|
T Consensus 225 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L 304 (373)
T PRK06753 225 FGKPHLQAYFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCL 304 (373)
T ss_pred ccHHHHHHHHhcCChHHHHHHHhCCcccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHh
Confidence 34567778888888777666654433232333444445567899999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCccccccccccc
Q 005770 398 EKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 465 (678)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 465 (678)
... +.+++|+.|+++|++++..++..++.+.. ++.....+...+|+..+.
T Consensus 305 ~~~-----------~~~~al~~Y~~~r~~~~~~~~~~s~~~~~-------~~~~~~~~~~~~r~~~l~ 354 (373)
T PRK06753 305 NAY-----------DFEKALQRYDKIRVKHTAKVIKRSRKIGK-------IAQIESKLLVALRNRVMK 354 (373)
T ss_pred hhc-----------cHHHHHHHHHHHhhHHHHHHHHHHHHHhH-------HHhcCCchHHHHHHHHHH
Confidence 531 34789999999999999988877764332 222344455666665543
No 14
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=7.7e-41 Score=363.28 Aligned_cols=377 Identities=17% Similarity=0.196 Sum_probs=242.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc-cccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS-AIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~-~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~ 153 (678)
|..+||+||||||+|+++|+.|+++|++|+|+|+... +........++..++++++++|+++ |+++++.+....+..
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~~ 79 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNL--GAWQGIEARRAAPYI 79 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhC--CchhhhhhhhCCccc
Confidence 3468999999999999999999999999999999632 1101100123467999999999999 899999764322222
Q ss_pred ceeeeeecCCCceeeeccCCCcccccCC-CeEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCeEEEEEcCCc
Q 005770 154 RINGLVDGISGSWYIKFDTFTPAAEKGL-PVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQ 229 (678)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~v~v~~~dg~ 229 (678)
.+. +++... .....++. ...+. ++++.+++..|++.|.+.+. +..++++++|++++++++.++|++++|+
T Consensus 80 ~~~-~~~~~~-~~~~~~~~----~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~ 153 (405)
T PRK08850 80 AME-VWEQDS-FARIEFDA----ESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQ 153 (405)
T ss_pred EEE-EEeCCC-CceEEEec----cccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCC
Confidence 222 233211 11222221 11112 34778999999999998763 3468899999999999999999999999
Q ss_pred EEeccEEEEecCCCchhhhhhcC-CCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCe-EEEEEEEe
Q 005770 230 CYAGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFHK 307 (678)
Q Consensus 230 ~i~a~~vVgADG~~S~VR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~~~ 307 (678)
+++||+||||||.+|.||+.++. .....|.+ .++.+..... .......++.| .+.+.+..+|..++. +.|++..+
T Consensus 154 ~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~~~~~-~~~g~~~~lp~~~~~~~~~~w~~~ 230 (405)
T PRK08850 154 ALTAKLVVGADGANSWLRRQMDIPLTHWDYGH-SALVANVRTV-DPHNSVARQIF-TPQGPLAFLPMSEPNMSSIVWSTE 230 (405)
T ss_pred EEEeCEEEEeCCCCChhHHHcCCCeeEEeecc-EEEEEEEEcc-CCCCCEEEEEE-cCCCceEEEECCCCCeEEEEEECC
Confidence 99999999999999999999853 34455644 4455443321 11122233444 444445555665443 33333221
Q ss_pred CCCCC--CC-CcchhHHHHHHHhccCChhHHHHHHcCCh-hhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchh
Q 005770 308 EPAGG--VD-GPEGKKERLLKIFEGWCDNVVDLILATDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGG 383 (678)
Q Consensus 308 ~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~ 383 (678)
..... .. ......+.+.+.+.. .+..... .....+++. ...+.+|..+||+|+|||||.++|++|||+
T Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~pl~-~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~ 302 (405)
T PRK08850 231 PLRAEALLAMSDEQFNKALTAEFDN-------RLGLCEVVGERQAFPLK-MRYARDFVRERVALVGDAAHTIHPLAGQGV 302 (405)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh-------hhCcEEEcccccEEecc-eeeccccccCcEEEEEhhhhcCCccccccH
Confidence 10000 00 000111112121111 0000000 000111222 233568999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCccccccccc
Q 005770 384 CMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFR 463 (678)
Q Consensus 384 n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 463 (678)
|+||+||.+|+|+|..+.+.+. +.....+|++|+++|++++..++..++. +..+|.....++..+|+..
T Consensus 303 n~ai~Da~~La~~L~~~~~~~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~R~~~ 371 (405)
T PRK08850 303 NLGLLDAASLAQEILALWQQGR----DIGLKRNLRGYERWRKAEAAKMIAAMQG-------FRDLFSGSNPAKKLVRGIG 371 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC----CcchHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHCCCchHHHHHHHHH
Confidence 9999999999999998774321 2234689999999999999977766543 3345556667788899988
Q ss_pred ccCCCCcch--hhHHhhhhh
Q 005770 464 IPHPGRVGG--RFFIDLAMP 481 (678)
Q Consensus 464 l~~~~~~~~--~~~~~~~~~ 481 (678)
+...+..+. +++++++++
T Consensus 372 l~~~~~~~~~k~~~~~~~~g 391 (405)
T PRK08850 372 MSLAGQLPGAKDEIMKRALG 391 (405)
T ss_pred HHHHhhCHHHHHHHHHHHhC
Confidence 877777664 455555544
No 15
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=1.7e-40 Score=357.84 Aligned_cols=371 Identities=19% Similarity=0.209 Sum_probs=238.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccc-cCCccc-ccceeeChhHHHHHHhcChhHHHHHHHhcccccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI-RGEGQY-RGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~-~~~g~~-~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~ 153 (678)
+.+||+||||||+|+++|+.|+++|++|+|+|+.+... ...+.. .+.+.++++++++|+++ |+++.+.+.......
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--G~~~~~~~~~~~~~~ 79 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESL--GAWSSIVAMRVCPYK 79 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHC--CCchhhhHhhCCccc
Confidence 35799999999999999999999999999999875321 111111 12357999999999999 899988764322222
Q ss_pred ceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhc---CCceEEeCCeEEEEEEeCCeEEEEEcCCcE
Q 005770 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQC 230 (678)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~ 230 (678)
.+. .++.... ...+.... .....+++.+.+..|...|.+++ ++..++++++|++++++++++++++++|++
T Consensus 80 ~~~-~~~~~~~--~~~~~~~~---~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~ 153 (384)
T PRK08849 80 RLE-TWEHPEC--RTRFHSDE---LNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAE 153 (384)
T ss_pred eEE-EEeCCCc--eEEecccc---cCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCE
Confidence 222 1221111 12222110 00112357788888999998875 335688999999999999999999999999
Q ss_pred EeccEEEEecCCCchhhhhhc-CCCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCC--eEEEEEEEe
Q 005770 231 YAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG--KMQWYAFHK 307 (678)
Q Consensus 231 i~a~~vVgADG~~S~VR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~w~~~~~ 307 (678)
++||+||+|||.+|.||+.++ ....+.|.+......+. . ........+..|...+...+ .|..++ .+.|+....
T Consensus 154 ~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~-~-~~~~~~~~~~~~~~~g~~~~-~pl~~~~~~~~~~~~~~ 230 (384)
T PRK08849 154 IEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVE-T-EQPQQDITWQQFTPSGPRSF-LPLCGNQGSLVWYDSPK 230 (384)
T ss_pred EEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEE-c-CCCCCCEEEEEeCCCCCEEE-eEcCCCceEEEEECCHH
Confidence 999999999999999999984 44556676643332221 1 11112234444544443322 344433 344432100
Q ss_pred CCCC-CCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHH
Q 005770 308 EPAG-GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMA 386 (678)
Q Consensus 308 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~g 386 (678)
.... ....++...+.+.+.+..+.. .........+++ ....+.+|+.|||+|+|||||.|+|++|||+|+|
T Consensus 231 ~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~l-~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~a 302 (384)
T PRK08849 231 RIKQLSAMNPEQLRSEILRHFPAELG-------EIKVLQHGSFPL-TRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLG 302 (384)
T ss_pred HHHHHHcCCHHHHHHHHHHHhhhhhC-------cEEeccceEeec-cccccchhccCCEEEEEcccccCCCCccchHhHH
Confidence 0000 000111122223332222111 111111111122 2345678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccccC
Q 005770 387 IEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPH 466 (678)
Q Consensus 387 l~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~ 466 (678)
|+||.+|++.|... + ...+++|+.|+++|++++..++..++. +..+|+....++..+|+.++..
T Consensus 303 l~Da~~L~~~l~~~--~-------~~~~~~L~~Ye~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~R~~~l~~ 366 (384)
T PRK08849 303 FKDVDVLLAETEKQ--G-------VLNDASFARYERRRRPDNLLMQTGMDL-------FYKTFSNSLTPLKFVRNAALKL 366 (384)
T ss_pred HHHHHHHHHHHHhc--C-------CCcHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHhcCCchHHHHHHHHHHHH
Confidence 99999999988642 1 134789999999999999866544332 3445666677889999999988
Q ss_pred CCCcch--hhHHhhhhh
Q 005770 467 PGRVGG--RFFIDLAMP 481 (678)
Q Consensus 467 ~~~~~~--~~~~~~~~~ 481 (678)
.+..++ +.+++.++|
T Consensus 367 ~~~~~~~k~~~~~~~~g 383 (384)
T PRK08849 367 AENSGPLKTQVLKYALG 383 (384)
T ss_pred HhccHHHHHHHHHHHcC
Confidence 888774 777777664
No 16
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=2.5e-40 Score=361.87 Aligned_cols=372 Identities=21% Similarity=0.258 Sum_probs=242.5
Q ss_pred CeEEEECCCHHHHHHHHHHHH----cCCcEEEEecccccccC-------Cc-ccccceeeChhHHHHHHhcChhHHHHHH
Q 005770 78 LRILVAGGGIGGLVFALAAKR----KGFEVLVFEKDMSAIRG-------EG-QYRGPIQIQSNALAALEAIDLDVAEEVM 145 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~----~g~~~~~~e~~~~~~~~-------~g-~~~~~~~l~~~~~~~L~~l~~gl~~~~~ 145 (678)
+||+||||||+|+++|+.|++ +|++|+|+|+++.+... .+ ...+++.++++++++|+.+ |+++++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~l--G~~~~l~ 78 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKI--GAWDHIQ 78 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHc--Cchhhhh
Confidence 689999999999999999999 89999999996433211 11 1124678999999999999 8999997
Q ss_pred HhccccccceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC-----CceEEeCCeEEEEEE----
Q 005770 146 RAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG-----DEIILNESNVIDFKD---- 216 (678)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-----~~~i~~~~~v~~~~~---- 216 (678)
+........+. ++++. +.....++.. ....++++.++|..|++.|.+.+. +..++++++|+++++
T Consensus 79 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~----~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~ 152 (437)
T TIGR01989 79 SDRIQPFGRMQ-VWDGC-SLALIRFDRD----NGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKY 152 (437)
T ss_pred hhcCCceeeEE-EecCC-CCceEEeecC----CCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEecccc
Confidence 65432222332 33332 2223444321 112345789999999999988762 346899999999975
Q ss_pred ---eCCeEEEEEcCCcEEeccEEEEecCCCchhhhhhc-CCCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEE
Q 005770 217 ---HGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVS 292 (678)
Q Consensus 217 ---~~~~v~v~~~dg~~i~a~~vVgADG~~S~VR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (678)
++++++|++.+|++++|||||||||++|.||+.++ ...+..|.+.. +...............++.|...+. +..
T Consensus 153 ~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~-~v~~v~~~~~~~~~~~~~~f~~~g~-~~~ 230 (437)
T TIGR01989 153 PNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHA-VVATLKLEEATENDVAWQRFLPTGP-IAL 230 (437)
T ss_pred ccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEE-EEEEEEcccCCCCCeEEEEECCCCC-EEE
Confidence 25679999999999999999999999999999994 44566777643 3333222111223345566665554 445
Q ss_pred eeCCCCeEEEEEEEeCCCCC---CCCcchhHHHHHHHhc----cCCh-----h----HHH-----------------HHH
Q 005770 293 SDVGAGKMQWYAFHKEPAGG---VDGPEGKKERLLKIFE----GWCD-----N----VVD-----------------LIL 339 (678)
Q Consensus 293 ~~~~~~~~~w~~~~~~~~~~---~~~~~~~~~~l~~~~~----~~~~-----~----~~~-----------------~l~ 339 (678)
.|..++...|++........ ....+.-.+.+.+.+. .|.. . +.+ .+.
T Consensus 231 lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 310 (437)
T TIGR01989 231 LPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVI 310 (437)
T ss_pred eECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCchhh
Confidence 57766665555433211000 0001111122222220 0000 0 000 000
Q ss_pred cCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHH
Q 005770 340 ATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKS 419 (678)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~ 419 (678)
.........+++ ....+.+|..+||+|+|||||.++|++|||||+||+||.+|+|+|+.+.+.+. +.....+|++
T Consensus 311 ~~~~~~~~~~~~-~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~----~~~~~~~L~~ 385 (437)
T TIGR01989 311 GVVDKSRAAFPL-GLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGA----DIGSISSLKP 385 (437)
T ss_pred eeecccceeEEe-cccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCC----ChhHHHHHHH
Confidence 000000011112 23345689999999999999999999999999999999999999998876532 2233579999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccccCCCCcc
Q 005770 420 YERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG 471 (678)
Q Consensus 420 Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 471 (678)
|+++|++++..++.+++. +..+|.....++..+|+.++.+.+.++
T Consensus 386 Y~~~R~~~~~~v~~~t~~-------l~~l~~~~~~~~~~~R~~~l~~~~~~~ 430 (437)
T TIGR01989 386 YERERYAKNVVLLGLVDK-------LHKLYATDFPPVVALRTFGLNLTNYIG 430 (437)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHcCCccHHHHHHHHHHHHhhhCH
Confidence 999999999977665543 344567777888899988887666654
No 17
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=6.5e-40 Score=354.63 Aligned_cols=364 Identities=21% Similarity=0.283 Sum_probs=241.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
+||+||||||+|+++|+.|+++|++|+|+||.+.... .+ ..+.++++++++|+++ |+++++.+.+... ..+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~-~g---~~~~l~~~~~~~l~~l--Gl~~~l~~~~~~~-~~~~- 72 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRT-GG---YMVDFWGVGYEVAKRM--GITDQLREAGYQI-EHVR- 72 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccC-CC---eEEeccCcHHHHHHHc--CCHHHHHhccCCc-cceE-
Confidence 4899999999999999999999999999999864422 12 2567899999999999 8899988765322 2222
Q ss_pred eeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCC-ceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEE
Q 005770 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~v 236 (678)
+.+. .+.....++........+.+ .+.+.|..|.+.|.+.+.. ..++++++|+++++++++|++++++|+++++|+|
T Consensus 73 ~~~~-~g~~~~~~~~~~~~~~~g~~-~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~v 150 (391)
T PRK07588 73 SVDP-TGRRKADLNVDSFRRMVGDD-FTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLV 150 (391)
T ss_pred EEcC-CCCEEEEecHHHccccCCCc-eEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEE
Confidence 2221 23333333211111112223 3589999999999887755 5699999999999999999999999999999999
Q ss_pred EEecCCCchhhhhhcCCCC--ccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEEEeCCCCCC-
Q 005770 237 IGADGIWSKVRKNLFGPQE--AIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGV- 313 (678)
Q Consensus 237 VgADG~~S~VR~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~- 313 (678)
|||||.+|.||+.++.... ..|.+...+....... .......+..|.+++..+..+|..++...|++....+....
T Consensus 151 IgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~ 229 (391)
T PRK07588 151 IGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDGY-RPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPP 229 (391)
T ss_pred EECCCCCccchhhccCCccceEEEcCcEEEEEEcCCC-CCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCcccc
Confidence 9999999999998743221 2344433322211111 11122334556666667777787777655544433222111
Q ss_pred CCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHHHHHHHH
Q 005770 314 DGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQL 393 (678)
Q Consensus 314 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~Da~~L 393 (678)
.......+.+.+.+..|.......+..........+.......+.+|..|||+|+|||||.|+|+.|||+|+||+||.+|
T Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~L 309 (391)
T PRK07588 230 LTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVL 309 (391)
T ss_pred CCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHH
Confidence 11233455566777766443333222221111011111122345689999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccccCCC
Q 005770 394 AVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPG 468 (678)
Q Consensus 394 a~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~ 468 (678)
+++|.... ...+.+|+.|+++|++++..++..++. ...++.....+...+|+..+....
T Consensus 310 a~~L~~~~---------~~~~~al~~Y~~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~R~~~~~~~~ 368 (391)
T PRK07588 310 AGELARAG---------GDHRRAFDAYEKRLRPFIAGKQAAAAK-------FLSVFAPKTRFGLYVRNIAMKIMN 368 (391)
T ss_pred HHHHHhcc---------CCHHHHHHHHHHHHHHHHHHHHhhccc-------ccccccCCCHHHHHHHHHHHHHhc
Confidence 99997531 124789999999999999988766543 223344455556677877776554
No 18
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=4.8e-39 Score=348.46 Aligned_cols=336 Identities=26% Similarity=0.379 Sum_probs=237.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
.+|+||||||+||++|+.|+++|++|+|+|+.+.... .| .++.++++++++|+++ |+++++.+.+... ..+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~-~g---~gi~l~~~~~~~L~~~--Gl~~~l~~~~~~~-~~~~- 74 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSE-VG---AGLQLAPNAMRHLERL--GVADRLSGTGVTP-KALY- 74 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc-CC---ccceeChhHHHHHHHC--CChHHHhhcccCc-ceEE-
Confidence 5799999999999999999999999999999864432 22 3678999999999999 8999987765432 2221
Q ss_pred eeecCCCceeeeccCCCcc-cccCCCeEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCeEEEEEc---CCcE
Q 005770 158 LVDGISGSWYIKFDTFTPA-AEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE---NGQC 230 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~v~v~~~---dg~~ 230 (678)
+.++.........+..... ...+.+ ...++|..|++.|.+.+. ...++++++|++++++++++++++. ++++
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~ 153 (400)
T PRK06475 75 LMDGRKARPLLAMQLGDLARKRWHHP-YIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVET 153 (400)
T ss_pred EecCCCcceEEEecchhhhhhcCCCC-ceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcE
Confidence 2333222211111110000 111223 257899999999999873 3468999999999998888988873 3458
Q ss_pred EeccEEEEecCCCchhhhhhcCCCCccccccEEEEEEecC--CCCCc-----CCcceEEEecCceEEEEeeCCCCeEEEE
Q 005770 231 YAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADF--VPADI-----ESVGYRVFLGHKQYFVSSDVGAGKMQWY 303 (678)
Q Consensus 231 i~a~~vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 303 (678)
++||+||||||.+|.||+.+.. ....|.+..++.++... .+... .......|++++..++.+|..++...++
T Consensus 154 ~~adlvIgADG~~S~vR~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~ 232 (400)
T PRK06475 154 VSAAYLIACDGVWSMLRAKAGF-SKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNF 232 (400)
T ss_pred EecCEEEECCCccHhHHhhcCC-CCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEE
Confidence 9999999999999999999843 45677777777766432 11111 1122345667777788888877755544
Q ss_pred EEEeCCCC--CCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcc
Q 005770 304 AFHKEPAG--GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQ 381 (678)
Q Consensus 304 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~Gq 381 (678)
.....+.. .........+.+.+.+..|.+.+...+..... +..++++.......|..|||+|+|||||.|+|+.||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~--~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~Gq 310 (400)
T PRK06475 233 VAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQILAAIDE--WTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQ 310 (400)
T ss_pred EEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHHHhcCCc--eeECcCcccCCCcceecCCEEEEecccccCCchhhh
Confidence 43322111 11112234578888899999888777765543 233455544333445689999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 005770 382 GGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 436 (678)
Q Consensus 382 G~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~ 436 (678)
|+|+||+||..|+++|... +...+|+.|+++|++++..++..++
T Consensus 311 G~n~aieDa~~La~~L~~~-----------~~~~aL~~Ye~~R~~r~~~~~~~s~ 354 (400)
T PRK06475 311 GAAMAIEDAAALAEALDSD-----------DQSAGLKRFDSVRKERIAAVAKRGQ 354 (400)
T ss_pred hHHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999531 2468999999999999998887665
No 19
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=1.2e-39 Score=352.53 Aligned_cols=381 Identities=18% Similarity=0.168 Sum_probs=248.5
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCC-cccccceeeChhHHHHHHhcChhHHHHHHHhcccc
Q 005770 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGE-GQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVT 151 (678)
Q Consensus 73 ~~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~-g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~ 151 (678)
+++..+||+||||||+|+++|+.|+++|++|+|+|+.+.+.... +...+.+.++++++++|+++ |+++.+.+.....
T Consensus 2 ~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~ 79 (392)
T PRK08773 2 SRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRL--GVWPAVRAARAQP 79 (392)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHC--CchhhhhHhhCCc
Confidence 34567899999999999999999999999999999986542211 11112457899999999999 8999887643222
Q ss_pred ccceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCCc
Q 005770 152 GDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQ 229 (678)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg~ 229 (678)
...+. +++... .....++... ....+.++.++|..|.+.|.+.+. +..++++++|++++.+++++++++++|+
T Consensus 80 ~~~~~-~~~~~~-~~~~~~~~~~---~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~ 154 (392)
T PRK08773 80 YRRMR-VWDAGG-GGELGFDADT---LGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGR 154 (392)
T ss_pred ccEEE-EEeCCC-CceEEechhc---cCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCC
Confidence 22222 232211 1122332111 111234688999999999988763 3468889999999999999999999998
Q ss_pred EEeccEEEEecCCCchhhhhhc-CCCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEEEeC
Q 005770 230 CYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKE 308 (678)
Q Consensus 230 ~i~a~~vVgADG~~S~VR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 308 (678)
+++||+||+|||.+|.+|+.++ ......|.+. +........ .......+..|...+ .+..+|..++...|++..+.
T Consensus 155 ~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~-~~~~~v~~~-~~~~~~~~~~~~~~g-~~~~lP~~~~~~~~~w~~~~ 231 (392)
T PRK08773 155 RLEAALAIAADGAASTLRELAGLPVSRHDYAQR-GVVAFVDTE-HPHQATAWQRFLPTG-PLALLPFADGRSSIVWTLPD 231 (392)
T ss_pred EEEeCEEEEecCCCchHHHhhcCCceEEEeccE-EEEEEEEcc-CCCCCEEEEEeCCCC-cEEEEECCCCceEEEEECCH
Confidence 9999999999999999999884 2233445432 222222111 111223344454444 34455666665544443221
Q ss_pred CCCC---CCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhH
Q 005770 309 PAGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 385 (678)
Q Consensus 309 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ 385 (678)
.... ........+++.+.+..+...+ .... ....+++. ...+.+|..+||+|+|||||.++|++|||+|+
T Consensus 232 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~--~~~~~~l~-~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~ 304 (392)
T PRK08773 232 AEAERVLALDEAAFSRELTQAFAARLGEV----RVAS--PRTAFPLR-RQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNL 304 (392)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhhhcCe----EecC--CccEeech-hhhhhhhcCCcEEEEechhhcCCCchhchhhh
Confidence 1000 0000111222333333222111 0010 01112232 23567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCccccccccccc
Q 005770 386 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 465 (678)
Q Consensus 386 gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 465 (678)
||+||.+|+++|.++++.+. +.....+|++|+++|++++..+ ...++ .+..+|+++..++..+|++++.
T Consensus 305 al~Da~~La~~L~~~~~~~~----~~~~~~~l~~y~~~R~~~~~~~------~~~~~-~l~~~f~~~~~~~~~~r~~~l~ 373 (392)
T PRK08773 305 GLRDVAALQQLVRQAHARRA----DWAAPHRLQRWARTRRSDNTVA------AYGFD-AINRVFSNDEMHLTLLRGSVLG 373 (392)
T ss_pred hHHHHHHHHHHHHHHHhcCC----CcccHHHHHHHHHHHHHHHHHH------HHHHH-HHHHHHcCCChHHHHHHHHHHH
Confidence 99999999999998765432 2234689999999999997633 22333 3566788889999999999998
Q ss_pred CCCCcch--hhHHhhhhh
Q 005770 466 HPGRVGG--RFFIDLAMP 481 (678)
Q Consensus 466 ~~~~~~~--~~~~~~~~~ 481 (678)
..+..+. +++++++++
T Consensus 374 ~~~~~~~~k~~~~~~~~g 391 (392)
T PRK08773 374 LAGKLPPLVDALWKRASG 391 (392)
T ss_pred HHhhCHHHHHHHHHHHcC
Confidence 8887764 777777664
No 20
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=5.7e-39 Score=346.90 Aligned_cols=342 Identities=20% Similarity=0.296 Sum_probs=224.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~ 154 (678)
+..+||+||||||+|+++|+.|+++|++|+|+|+.+.+....+ +..++++++++|+++ |+++.+.+.+......
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~----~~~l~~~~~~~L~~l--Gl~~~~~~~~~~~~~~ 76 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNG----ADLLKPSGIGVVRAM--GLLDDVFAAGGLRRDA 76 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCc----ccccCccHHHHHHHc--CCHHHHHhcccccccc
Confidence 4568999999999999999999999999999999876533222 445999999999999 8999988765332222
Q ss_pred eeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCe--EEEEEcCCc
Q 005770 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDK--VSVVLENGQ 229 (678)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~--v~v~~~dg~ 229 (678)
+. +.. .++....++... .. ...+...+.|..|+++|.+.+. +..++++++|+++++++++ +.|++++|+
T Consensus 77 ~~-~~~--~g~~~~~~~~~~-~~--~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~ 150 (388)
T PRK07045 77 MR-LYH--DKELIASLDYRS-AS--ALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGE 150 (388)
T ss_pred eE-Eec--CCcEEEEecCCc-cc--cCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCC
Confidence 22 111 233233222111 01 1122356899999999998763 3568999999999987665 368888999
Q ss_pred EEeccEEEEecCCCchhhhhhcC--CCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEEEe
Q 005770 230 CYAGDLLIGADGIWSKVRKNLFG--PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHK 307 (678)
Q Consensus 230 ~i~a~~vVgADG~~S~VR~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 307 (678)
++++|+||||||.+|.||+.+.+ .....|.+... .+..... .........++....++++.+|..++...|++..+
T Consensus 151 ~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 228 (388)
T PRK07045 151 RVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMA-FGTIALT-DSVRECNRLYVDSNQGLAYFYPIGDQATRLVVSFP 228 (388)
T ss_pred EEECCEEEECCCCChHHHHHhhCCCcccCCCCccee-EEEEecc-CCccccceEEEcCCCceEEEEEcCCCcEEEEEEec
Confidence 99999999999999999997632 22344544333 2332221 11111122223233445555677666666655443
Q ss_pred CCCCCCCCcchhHHHHHHHhccCC-hhHHHHHHcCChhh-hhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhH
Q 005770 308 EPAGGVDGPEGKKERLLKIFEGWC-DNVVDLILATDEEA-ILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 385 (678)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ 385 (678)
.+...........+.+.+.+..|. +.+.+.+....... +....+. ...+.+|+.|||+|+|||||.|+|++|||+|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ 307 (388)
T PRK07045 229 ADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLG-RMNLDRYHKRNVVLLGDAAHSIHPITGQGMNL 307 (388)
T ss_pred cccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccceeecC-ccccccccCCCEEEEEccccccCCCccccHHH
Confidence 221111111123345555555554 22223332222111 1111122 23456899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005770 386 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 437 (678)
Q Consensus 386 gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~ 437 (678)
||+||.+|+++|..++.+. ...+.+|++|+++|++++..++..++.
T Consensus 308 ai~Da~~La~~L~~~~~~~------~~~~~~L~~Ye~~R~~~~~~~~~~~~~ 353 (388)
T PRK07045 308 AIEDAGELGACLDLHLSGQ------IALADALERFERIRRPVNEAVISYGHA 353 (388)
T ss_pred HHHHHHHHHHHHHhhcCCc------hhHHHHHHHHHHHhhhHHHHHHhhhHH
Confidence 9999999999998875432 245789999999999999988776654
No 21
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=1.8e-39 Score=352.80 Aligned_cols=376 Identities=18% Similarity=0.248 Sum_probs=240.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccccccc----CCcccccceeeChhHHHHHHhcChhHHHHHHHhccccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIR----GEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~----~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~ 152 (678)
.+||+||||||+|+++|+.|+++|++|+|+|+.+.... ..........++++++++|+.+ |+++++.+....+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~ 79 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERL--GAWDGIAARRASPY 79 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHC--ChhhhhhHhhCccc
Confidence 47999999999999999999999999999999863110 0000112356899999999999 89998875432222
Q ss_pred cceeeeeecCCCceeeeccCCCcccccC-CCeEEEeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEEeCCeEEEEEcCCc
Q 005770 153 DRINGLVDGISGSWYIKFDTFTPAAEKG-LPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQ 229 (678)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~~~~~~~~v~v~~~dg~ 229 (678)
..+. +++.. +.....+... ... ...++.++|..|.+.|.+.+.. ..++++++++++++++++++|++++|+
T Consensus 80 ~~~~-~~~~~-~~~~~~~~~~----~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~ 153 (405)
T PRK05714 80 SEMQ-VWDGS-GTGQIHFSAA----SVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGR 153 (405)
T ss_pred eeEE-EEcCC-CCceEEeccc----ccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCC
Confidence 2222 23322 2223333311 111 1236789999999999887643 458889999999999999999999999
Q ss_pred EEeccEEEEecCCCchhhhhhcC-CCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCC-eEEEEE-EE
Q 005770 230 CYAGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG-KMQWYA-FH 306 (678)
Q Consensus 230 ~i~a~~vVgADG~~S~VR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~-~~ 306 (678)
+++||+||+|||++|.||+.++. .....|.+...+. .... +.......+..+... ..+..+|...+ ...|.. ..
T Consensus 154 ~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~-g~~~~~P~~~~~~~~~~~~~~ 230 (405)
T PRK05714 154 QLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVT-SVRC-SEPHRATAWQRFTDD-GPLAFLPLERDGDEHWCSIVW 230 (405)
T ss_pred EEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEE-EEEc-CCCCCCEEEEEcCCC-CCeEEeeCCCCCCCCeEEEEE
Confidence 99999999999999999999843 2334455432222 1211 111222334444443 34555565432 112321 11
Q ss_pred eCCCCCC-----CCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcc
Q 005770 307 KEPAGGV-----DGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQ 381 (678)
Q Consensus 307 ~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~Gq 381 (678)
..+.... ...+.-.+++.+.|.. .+.+.+ ... ....+++.. ..+.+|..+||+|+|||||.|+|++||
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~-~~~--~~~~~~l~~-~~~~~~~~~rv~LlGDAAH~~~P~~GQ 303 (405)
T PRK05714 231 STTPEEAERLMALDDDAFCAALERAFEG---RLGEVL-SAD--PRLCVPLRQ-RHAKRYVEPGLALIGDAAHTIHPLAGQ 303 (405)
T ss_pred ECCHHHHHHHHCCCHHHHHHHHHHHHHH---HhCCce-ecC--CccEEecce-eehhhhccCCEEEEEeccccCCCcccc
Confidence 1111000 0000011122222211 111111 111 112233333 246789999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCccccccc
Q 005770 382 GGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTK 461 (678)
Q Consensus 382 G~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 461 (678)
|+|+||+||.+|+|+|+.+...+ .+.+...+|+.|+++|++++..++..++. +..+|.++..+++.+|+
T Consensus 304 G~n~al~DA~~La~~L~~~~~~g----~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~R~ 372 (405)
T PRK05714 304 GVNLGFLDAAVLAEVLLHAAERG----ERLADVRVLSRFERRRMPHNLALMAAMEG-------FERLFQADPLPLRWLRN 372 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHCCCchHHHHHHH
Confidence 99999999999999998765321 11223589999999999999988766543 33456677788899999
Q ss_pred ccccCCCCcch--hhHHhhhhh
Q 005770 462 FRIPHPGRVGG--RFFIDLAMP 481 (678)
Q Consensus 462 ~~l~~~~~~~~--~~~~~~~~~ 481 (678)
.++...+..++ ++++++++|
T Consensus 373 ~~l~~~~~~~~~k~~~~~~~~g 394 (405)
T PRK05714 373 TGLKLVDQMPEAKALFVRQALG 394 (405)
T ss_pred HHHHHHhhCHHHHHHHHHHHhc
Confidence 99987777663 777777765
No 22
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=4.6e-39 Score=350.12 Aligned_cols=374 Identities=19% Similarity=0.192 Sum_probs=244.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~ 153 (678)
....+||+||||||+|+++|+.|+++|++|+|+|+++..... .++..+++.++++|+++ |+++++.+.......
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~----~r~~~l~~~s~~~L~~l--G~~~~~~~~~~~~~~ 76 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRD----FRGDTVHPSTLELMDEL--GLLERFLELPHQKVR 76 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcc----ccCceeChhHHHHHHHc--CChhHHhhcccceee
Confidence 446689999999999999999999999999999998543221 12467999999999999 788888664322222
Q ss_pred ceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCeE---EEEEcC
Q 005770 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKV---SVVLEN 227 (678)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~v---~v~~~d 227 (678)
.+. +++.........++. .....++.+.+++..|.+.|.+.+. +..+++++++++++.+++.+ ++...+
T Consensus 77 ~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~ 151 (407)
T PRK06185 77 TLR-FEIGGRTVTLADFSR----LPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPD 151 (407)
T ss_pred eEE-EEECCeEEEecchhh----cCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCC
Confidence 222 222111011122221 1223456778999999999988762 35688899999999887765 344456
Q ss_pred Cc-EEeccEEEEecCCCchhhhhhc-CCCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEE
Q 005770 228 GQ-CYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 305 (678)
Q Consensus 228 g~-~i~a~~vVgADG~~S~VR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 305 (678)
|+ +++||+||+|||.+|.||+.++ ......|.+...+..+ .. +.......+..+ .++..+...|.. +.+.+.+.
T Consensus 152 g~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~~g~~~llP~~-~~~~i~~~ 227 (407)
T PRK06185 152 GPGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFRL-PR-EPDDPESLMGRF-GPGQGLIMIDRG-DYWQCGYV 227 (407)
T ss_pred CcEEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEec-CC-CCCCCcccceEe-cCCcEEEEEcCC-CeEEEEEE
Confidence 64 7999999999999999999984 3344455554333221 11 111111234434 444455555665 44333322
Q ss_pred EeCCCCCCCCcchhHHHHHHHhccCChhHHHHHHcCChh-hhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhh
Q 005770 306 HKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEE-AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGC 384 (678)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n 384 (678)
.+.. ..........+.+.+.+..+.+.+.+.+...... ....+.+. ...+.+|..+|++|+|||||.+||++|||||
T Consensus 228 ~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~-~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n 305 (407)
T PRK06185 228 IPKG-GYAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVR-VDRLRRWHRPGLLCIGDAAHAMSPVGGVGIN 305 (407)
T ss_pred ecCC-CchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEe-ccccccccCCCeEEEeccccccCcccccchh
Confidence 2211 1111122334556666655555544444332211 11111221 2345679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCC--Ccccccccc
Q 005770 385 MAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGL--GPLSFLTKF 462 (678)
Q Consensus 385 ~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~~ 462 (678)
+||+||..|+++|..+++.+ + ....+|+.|+++|++++..++.++. . +..+|.+.. .+++++|++
T Consensus 306 lgl~Da~~La~~l~~~~~~~-~-----~~~~~L~~Y~~~R~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~R~~ 372 (407)
T PRK06185 306 LAIQDAVAAANILAEPLRRG-R-----VSDRDLAAVQRRREFPTRVTQALQR------R-IQRRLLAPALAGRGPLGPPL 372 (407)
T ss_pred HHHHHHHHHHHHHHHHhccC-C-----ccHHHHHHHHHHhhhHHHHHHHHHH------H-HHHhhccccccCccccCCch
Confidence 99999999999999887653 1 1248999999999999986654433 2 344566666 889999999
Q ss_pred cccCCCCcch--hhHHh
Q 005770 463 RIPHPGRVGG--RFFID 477 (678)
Q Consensus 463 ~l~~~~~~~~--~~~~~ 477 (678)
+|...+..++ +.+++
T Consensus 373 ~l~~~~~~~~~k~~~~~ 389 (407)
T PRK06185 373 LLRLLNRLPWLRRLPAR 389 (407)
T ss_pred HHHHHHhChhHHHhhHH
Confidence 9988877763 44444
No 23
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=3.7e-38 Score=341.82 Aligned_cols=343 Identities=31% Similarity=0.440 Sum_probs=240.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccce
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~ 155 (678)
+..||+||||||+||++|+.|+++|++|+|+||.+.... . ..++.++++++++|+++ |+++.+.+.+... ..+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~-~---g~gi~l~~~~~~~l~~l--g~~~~~~~~~~~~-~~~ 75 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGE-I---GAGIQLGPNAFSALDAL--GVGEAARQRAVFT-DHL 75 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccccc-c---cceeeeCchHHHHHHHc--CChHHHHhhccCC-cce
Confidence 457999999999999999999999999999999865432 2 23688999999999999 7888877654322 222
Q ss_pred eeeeecCCCceeeeccCCC-cccccCCCeEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCeEEEEEcCCcEE
Q 005770 156 NGLVDGISGSWYIKFDTFT-PAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (678)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i 231 (678)
. +.+...+.....++... .....+.+ .+.+.|..|.+.|.+.+. ...+++++++++++++++++++++.+|+++
T Consensus 76 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~ 153 (396)
T PRK08163 76 T-MMDAVDAEEVVRIPTGQAFRARFGNP-YAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRW 153 (396)
T ss_pred E-EEeCCCCCEEEEeccchhHHHhcCCc-EEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEE
Confidence 2 23322233222222111 01122334 357899999999998763 346889999999998888999999999999
Q ss_pred eccEEEEecCCCchhhhhhcCCCCccccccEEEEEEecC--CCCCcCCcceEEEecCceEEEEeeCCCCeE-EEEEEEeC
Q 005770 232 AGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADF--VPADIESVGYRVFLGHKQYFVSSDVGAGKM-QWYAFHKE 308 (678)
Q Consensus 232 ~a~~vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~w~~~~~~ 308 (678)
+||+||+|||.+|.+|+.+.+. ...+.+..++.++... .+..........+.+++..++.+|..++.. .|++....
T Consensus 154 ~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~ 232 (396)
T PRK08163 154 TGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHS 232 (396)
T ss_pred ecCEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECC
Confidence 9999999999999999998443 3445555666655432 111111122345566666677777766653 33333222
Q ss_pred CC-CCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHH
Q 005770 309 PA-GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAI 387 (678)
Q Consensus 309 ~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl 387 (678)
.. ..........+.+.+.+..|.+.+.+.+..... +..+.+....+..+|..|||+|+|||||.|+|++|||+|+||
T Consensus 233 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai 310 (396)
T PRK08163 233 REQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPTS--WKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMAL 310 (396)
T ss_pred CCCcccccCCCCHHHHHHHHcCCChHHHHHHhcCCc--eeEccccCCCcccccccCcEEEEecccccCCcchhccHHHHH
Confidence 11 111112234577888999998887766654322 222334444566789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005770 388 EDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 439 (678)
Q Consensus 388 ~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~ 439 (678)
+||.+|++.|... ..+.+.+|+.|+++|++++..++..++.+.
T Consensus 311 ~Da~~La~~L~~~---------~~~~~~al~~y~~~R~~r~~~~~~~s~~~~ 353 (396)
T PRK08163 311 EDAVTLGKALEGC---------DGDAEAAFALYESVRIPRTARVVLSAREMG 353 (396)
T ss_pred HHHHHHHHHHHhc---------cccHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999652 123578999999999999999887776543
No 24
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=3.6e-38 Score=340.11 Aligned_cols=335 Identities=27% Similarity=0.382 Sum_probs=229.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~ 153 (678)
.|+..+|+||||||+||++|+.|+++|++|+|+||.+......| .++.++++++++|+++ |+.+.. ..+....
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g---~gi~l~~~~~~~l~~l--g~~~~~-~~~~~~~- 75 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRG---AGIVLQPELLRALAEA--GVALPA-DIGVPSR- 75 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCC---ceeEeCHHHHHHHHHc--CCCccc-ccccCcc-
Confidence 35668999999999999999999999999999999864432222 2578999999999999 565543 2221111
Q ss_pred ceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEec
Q 005770 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (678)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a 233 (678)
... +.+ ..+....... .+ ...+.+..|.+.|.+.++...++++++|++++++++++++++++|++++|
T Consensus 76 ~~~-~~~-~~g~~~~~~~---------~~-~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a 143 (386)
T PRK07236 76 ERI-YLD-RDGRVVQRRP---------MP-QTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETA 143 (386)
T ss_pred ceE-EEe-CCCCEeeccC---------CC-ccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEe
Confidence 111 122 1122111111 11 12356788999999888766799999999999999999999999999999
Q ss_pred cEEEEecCCCchhhhhhcCCCCccccccEEEEEEecCC--CCCc---CCcceEEEecCceEEEEeeCCC---------Ce
Q 005770 234 DLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFV--PADI---ESVGYRVFLGHKQYFVSSDVGA---------GK 299 (678)
Q Consensus 234 ~~vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~---------~~ 299 (678)
|+||+|||++|.||+.+++.....|.++.++.++.... +... ....+..+.+++..++.++.++ ..
T Consensus 144 d~vIgADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (386)
T PRK07236 144 DLLVGADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRR 223 (386)
T ss_pred CEEEECCCCCchHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcE
Confidence 99999999999999998666667788877777664321 1111 0123445556665555555432 22
Q ss_pred EEEEEEEeCCCCC-C-------------------CCcchhHHHHHHHhcc-CChhHHHHHHcCChhhhhhcccccCCCCc
Q 005770 300 MQWYAFHKEPAGG-V-------------------DGPEGKKERLLKIFEG-WCDNVVDLILATDEEAILRRDIYDRTPIF 358 (678)
Q Consensus 300 ~~w~~~~~~~~~~-~-------------------~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 358 (678)
+.|+++...+... . .......+.+.+.+.. |.+.+.+.+...... ..+.++.. ...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~ 300 (386)
T PRK07236 224 YNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEATAQP--FVQAIFDL-EVP 300 (386)
T ss_pred EEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhCcCc--hhhhhhcc-cCc
Confidence 4455544332200 0 0011223444444554 666666666544332 12233332 246
Q ss_pred cccCCcEEEEccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005770 359 TWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSA 438 (678)
Q Consensus 359 ~~~~grv~LvGDAAH~~~P~~GqG~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~ 438 (678)
+|..|||+|+|||||.|+|+.|||+|+||+||..|+++|.... .+...+|+.|+++|++++..++..++.+
T Consensus 301 ~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~---------~~~~~al~~Ye~~R~~r~~~~~~~s~~~ 371 (386)
T PRK07236 301 RMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA---------GDIDAALAAWEAERLAVGAAIVARGRRL 371 (386)
T ss_pred ccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc---------cchHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999997631 1257899999999999999998877654
Q ss_pred H
Q 005770 439 A 439 (678)
Q Consensus 439 ~ 439 (678)
.
T Consensus 372 ~ 372 (386)
T PRK07236 372 G 372 (386)
T ss_pred H
Confidence 3
No 25
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=4.1e-38 Score=342.90 Aligned_cols=341 Identities=26% Similarity=0.398 Sum_probs=242.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcC-CcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccc---c
Q 005770 78 LRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG---D 153 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g-~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~---~ 153 (678)
.+|+||||||+||++|+.|+++| ++|+|+||.+... ..| .++.+.++++++|+++ |+.+.+.+.+.... .
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~-~~G---~gi~l~~~~~~~L~~l--g~~~~~~~~~~~~~~~~~ 74 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG-EVG---AGVSFGANAVRAIVGL--GLGEAYTQVADSTPAPWQ 74 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC-CCc---cceeeCccHHHHHHHc--CChhHHHHHhcCCCccCc
Confidence 47999999999999999999998 6999999986542 222 3688999999999999 77777765442111 1
Q ss_pred cee-eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEe
Q 005770 154 RIN-GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (678)
Q Consensus 154 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~ 232 (678)
... .+.++..+.... .. ...+.+ ...+.|..|.+.|.+.+....++++++|+++++++++|++++++|++++
T Consensus 75 ~~~~~~~~~~~~~~~~-~~-----~~~~~~-~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ 147 (414)
T TIGR03219 75 DIWFEWRNGSDASYLG-AT-----IAPGVG-QSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYR 147 (414)
T ss_pred ceeEEEEecCccceee-ee-----ccccCC-cccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEE
Confidence 111 111211111110 00 001112 1368999999999999866668899999999999999999999999999
Q ss_pred ccEEEEecCCCchhhhhhcC-----CCCccccccEEEEEEecCCC--CC-----cC---CcceEEEecCceEEEEeeCCC
Q 005770 233 GDLLIGADGIWSKVRKNLFG-----PQEAIYSGYTCYTGIADFVP--AD-----IE---SVGYRVFLGHKQYFVSSDVGA 297 (678)
Q Consensus 233 a~~vVgADG~~S~VR~~l~~-----~~~~~~~~~~~~~~~~~~~~--~~-----~~---~~~~~~~~~~~~~~~~~~~~~ 297 (678)
+|+||+|||.+|.||+.+++ ...+.|.++.++.++..... .. .+ ......+.+.+..++.+|..+
T Consensus 148 ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 227 (414)
T TIGR03219 148 CDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQ 227 (414)
T ss_pred eeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCC
Confidence 99999999999999999853 23356777777777653210 00 00 012235666666777778777
Q ss_pred CeE-EEEEEEeCCCC--------CCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEE
Q 005770 298 GKM-QWYAFHKEPAG--------GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLL 368 (678)
Q Consensus 298 ~~~-~w~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~Lv 368 (678)
+.. .|..+...+.. .........+.+++.+..|.+.+.+.+...... ..+.++...+..+|..|||+|+
T Consensus 228 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~w~~grv~Li 305 (414)
T TIGR03219 228 GRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAP--TLWALHDLAELPGYVHGRVALI 305 (414)
T ss_pred CcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCC--CceeeeecccccceeeCcEEEE
Confidence 664 34444322211 111123346778888999998887777655432 2344555556678999999999
Q ss_pred ccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005770 369 GDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 439 (678)
Q Consensus 369 GDAAH~~~P~~GqG~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~ 439 (678)
|||||.|+|+.|||+|+||+||..|+++|.....+ ..+.+.+|+.|+++|+|++..++..++...
T Consensus 306 GDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~------~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~ 370 (414)
T TIGR03219 306 GDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELE------AGDLPALLEAYDDVRRPRACRVQRTSREAG 370 (414)
T ss_pred EcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccC------cchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999875322 235689999999999999999998887544
No 26
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=6.7e-39 Score=346.92 Aligned_cols=378 Identities=20% Similarity=0.199 Sum_probs=242.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcc-c-ccceeeChhHHHHHHhcChhHHHHHHHhccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQ-Y-RGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~-~-~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~ 152 (678)
...+||+||||||+|+++|+.|+++|++|+|+|+.+......+. . .+...++++++++|+.+ |+++.+.+......
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~ 80 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGL--GVWDAVQAMRSHPY 80 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHc--CChhhhhhhhCccc
Confidence 35689999999999999999999999999999997543221111 1 12357999999999999 89988876432221
Q ss_pred cceeeeeecCCCceeeeccCCCcccccC-CCeEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCeEEEEEcCC
Q 005770 153 DRINGLVDGISGSWYIKFDTFTPAAEKG-LPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENG 228 (678)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~v~v~~~dg 228 (678)
..+. .+....+. ..++.. ... ...++.++|..|++.|.+.+. +..++++++|++++++++++.|++++|
T Consensus 81 ~~~~-~~~~~~~~--~~~~~~----~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g 153 (391)
T PRK08020 81 RRLE-TWEWETAH--VVFDAA----ELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADG 153 (391)
T ss_pred ceEE-EEeCCCCe--EEeccc----ccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCC
Confidence 1221 11111121 222211 111 123678999999999988762 446888999999998888999999999
Q ss_pred cEEeccEEEEecCCCchhhhhhc-CCCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEEEe
Q 005770 229 QCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHK 307 (678)
Q Consensus 229 ~~i~a~~vVgADG~~S~VR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 307 (678)
++++||+||+|||.+|.||+.++ +...+.|.+. ++...... +.......+..+...+...+ +|..++...+.++.
T Consensus 154 ~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~-~~~~~~~~-~~~~~~~~~~~~~~~g~~~~-~p~~~~~~~~v~~~- 229 (391)
T PRK08020 154 EEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQS-CMLISVKC-ENPPGDSTWQQFTPSGPRAF-LPLFDNWASLVWYD- 229 (391)
T ss_pred CEEEeCEEEEeCCCCchhHHHcCCCccccCCCce-EEEEEEEe-cCCCCCEEEEEEcCCCCEEE-eECCCCcEEEEEEC-
Confidence 89999999999999999999984 4445566653 33322221 11122234444554444332 34444432222211
Q ss_pred CCCCCCCCcchhHHHHHHHhc-cCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHH
Q 005770 308 EPAGGVDGPEGKKERLLKIFE-GWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMA 386 (678)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~g 386 (678)
.+.........+.+++.+.+. .|.+.+ ..........+++.. ..+.+|..+|++|+|||||.++|++|||+|+|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~pl~~-~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~a 304 (391)
T PRK08020 230 SPARIRQLQAMSMAQLQQEIAAHFPARL----GAVTPVAAGAFPLTR-RHALQYVQPGLALVGDAAHTINPLAGQGVNLG 304 (391)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHhhhhc----cceEeccccEeecce-eehhhhccCcEEEEechhhccCCcccchhHHH
Confidence 110000000001122222211 111111 111111111222322 34668999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccccC
Q 005770 387 IEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPH 466 (678)
Q Consensus 387 l~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~ 466 (678)
|+||.+|+++|....+.+ .+.....+|++|+++|+++...++ ..++. +..+|++...+++.+|+.++..
T Consensus 305 l~Da~~La~~L~~~~~~~----~~~~~~~~L~~Y~~~R~~~~~~~~------~~~~~-l~~~~~~~~~~~~~~R~~~l~~ 373 (391)
T PRK08020 305 YRDVDALLDVLVNARSYG----EAWASEAVLKRYQRRRMADNLLMQ------SGMDL-FYAGFSNNLPPLRFARNLGLMA 373 (391)
T ss_pred HHHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHHHHHHH------HHHHH-HHHHHcCCchHHHHHHHHHHHH
Confidence 999999999999875432 122346899999999999876443 33333 4456788888999999999988
Q ss_pred CCCcch--hhHHhhhhh
Q 005770 467 PGRVGG--RFFIDLAMP 481 (678)
Q Consensus 467 ~~~~~~--~~~~~~~~~ 481 (678)
.+..++ ++++++++|
T Consensus 374 ~~~~~~~k~~~~~~~~g 390 (391)
T PRK08020 374 AQRAGVLKRQALKYALG 390 (391)
T ss_pred HhcCHHHHHHHHHHHcC
Confidence 887764 777777765
No 27
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=1e-37 Score=339.50 Aligned_cols=336 Identities=31% Similarity=0.425 Sum_probs=232.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
+||+||||||+||++|+.|+++|++|+|+|+.+... ..| .++.++++++++|+++ |+++++...+... ..+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~-~~g---~gi~l~p~~~~~L~~l--gl~~~l~~~~~~~-~~~~- 72 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR-PLG---VGINLLPHAVRELAEL--GLLDALDAIGIRT-RELA- 72 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc-ccC---cceeeCchHHHHHHHC--CCHHHHHhhCCCC-cceE-
Confidence 489999999999999999999999999999986543 222 3678999999999999 7888887655322 1221
Q ss_pred eeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhc----CCceEEeCCeEEEEEEeCCeEEEEEcCC-----
Q 005770 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV----GDEIILNESNVIDFKDHGDKVSVVLENG----- 228 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~----~~~~i~~~~~v~~~~~~~~~v~v~~~dg----- 228 (678)
+.+. .+........ ........+ .+.++|..|++.|.+.+ +...++++++|++++++++++.+.+.++
T Consensus 73 ~~~~-~g~~~~~~~~-~~~~~~~~~-~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~ 149 (413)
T PRK07538 73 YFNR-HGQRIWSEPR-GLAAGYDWP-QYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDL 149 (413)
T ss_pred EEcC-CCCEEeeccC-CcccCCCCc-eEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCcc
Confidence 2221 2222221110 001112233 35799999999998875 2345899999999998888877777653
Q ss_pred cEEeccEEEEecCCCchhhhhhcCCC-CccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCC-------CeE
Q 005770 229 QCYAGDLLIGADGIWSKVRKNLFGPQ-EAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGA-------GKM 300 (678)
Q Consensus 229 ~~i~a~~vVgADG~~S~VR~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 300 (678)
++++||+||||||.+|.||+++.+.. ...|.+...|.++....+. .....+.++...+..++.+|... ..+
T Consensus 150 ~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~ 228 (413)
T PRK07538 150 VSVRGDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPF-LTGRSMVMAGHLDGKLVVYPISEPVDADGRQLI 228 (413)
T ss_pred ceEEeeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccc-cCCCcEEEEcCCCCEEEEEECCCCcccCCceEE
Confidence 48999999999999999999995433 5667777777766443211 11111222222234455556543 256
Q ss_pred EEEEEEeCCCC-----CCCCcchhHHHHHHHhccCChh---HHHHHHcCChhhhhhcccccCCCCccccCCcEEEEcccc
Q 005770 301 QWYAFHKEPAG-----GVDGPEGKKERLLKIFEGWCDN---VVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSV 372 (678)
Q Consensus 301 ~w~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAA 372 (678)
.|++....+.. .........+++++.+..|... +.+.+.... .+..+++..+.+..+|..|||+|+||||
T Consensus 229 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~p~~~~~~~~~w~~grv~LvGDAA 306 (413)
T PRK07538 229 NWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAE--AIYEYPMVDRDPLPRWTRGRVTLLGDAA 306 (413)
T ss_pred EEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCc--ceeeccccccCCCCcccCCcEEEEeecc
Confidence 78876654321 1111233456777777777543 334443222 2334455555667789999999999999
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005770 373 HAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 437 (678)
Q Consensus 373 H~~~P~~GqG~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~ 437 (678)
|.|+|++|||+|+||+||..|+++|... .+.+++|+.|+++|++++..++..++.
T Consensus 307 H~~~P~~GqG~~~Ai~Da~~La~~L~~~----------~~~~~aL~~Ye~~R~~~~~~~~~~s~~ 361 (413)
T PRK07538 307 HPMYPVGSNGASQAILDARALADALAAH----------GDPEAALAAYEAERRPATAQIVLANRL 361 (413)
T ss_pred CcCCCCCcccHHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 9999999999999999999999999863 125789999999999999988877664
No 28
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=9.9e-39 Score=345.23 Aligned_cols=374 Identities=18% Similarity=0.172 Sum_probs=241.6
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccc
Q 005770 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (678)
Q Consensus 73 ~~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~ 152 (678)
+++..+||+||||||+|+++|+.|+++|++|+|+|+.+.... .+...++++++++|+++ |+++.+...... .
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~-----~r~~~l~~~s~~~l~~l--gl~~~~~~~~~~-~ 74 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD-----LRTTALLGPSIRFLERL--GLWARLAPHAAP-L 74 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCC-----cchhhCcHHHHHHHHHh--CchhhhHhhcce-e
Confidence 345678999999999999999999999999999999864321 12456788999999999 899988765432 1
Q ss_pred cceeeeeecCCCce----eeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEEeCCeEEEEEc
Q 005770 153 DRINGLVDGISGSW----YIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLE 226 (678)
Q Consensus 153 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~~~~~~~~v~v~~~ 226 (678)
..+. +++.. +.. ...+.. ......++++.+++..|++.|.+.+.. ...+++++|+++++++++++++++
T Consensus 75 ~~~~-~~~~~-g~~~~~~~~~~~~---~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~ 149 (388)
T PRK07494 75 QSMR-IVDAT-GRLIRAPEVRFRA---AEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLA 149 (388)
T ss_pred eEEE-EEeCC-CCCCCCceEEEcH---HhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEEC
Confidence 1222 22221 111 111211 111123457889999999999987632 234789999999999999999999
Q ss_pred CCcEEeccEEEEecCCCchhhhhhcC-CCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEE
Q 005770 227 NGQCYAGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 305 (678)
Q Consensus 227 dg~~i~a~~vVgADG~~S~VR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 305 (678)
+|++++||+||+|||.+|.+|+.++. .....|.+. ++...... +.......+.++...+ .+..+|.+++...+++.
T Consensus 150 ~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~-~~~~~v~~-~~~~~~~~~~~~~~~g-~~~~~Pl~~~~~~~v~~ 226 (388)
T PRK07494 150 DGTTLSARLVVGADGRNSPVREAAGIGVRTWSYPQK-ALVLNFTH-SRPHQNVSTEFHTEGG-PFTQVPLPGRRSSLVWV 226 (388)
T ss_pred CCCEEEEeEEEEecCCCchhHHhcCCCceecCCCCE-EEEEEEec-cCCCCCEEEEEeCCCC-cEEEEECCCCcEEEEEE
Confidence 99999999999999999999999843 334455553 33322221 1111122233444444 45555666555444433
Q ss_pred EeCCCCCCCCcchhHHHHHHHhccCChhHHHHHHcCCh-hhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhh
Q 005770 306 HKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGC 384 (678)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n 384 (678)
...+.. ......+.+++.+.+..+.. +.+..... .....+++.. ....+|..+||+|+|||||.++|++|||||
T Consensus 227 ~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~l~~-~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n 301 (388)
T PRK07494 227 VRPAEA-ERLLALSDAALSAAIEERMQ---SMLGKLTLEPGRQAWPLSG-QVAHRFAAGRTALVGEAAHVFPPIGAQGLN 301 (388)
T ss_pred CCHHHH-HHHHcCCHHHHHHHHHHHHh---hhcCCeEEccCCcEeechH-HHHHhhccCceEEEEhhhhcCCchhhcccc
Confidence 211100 00000112233333322111 11111110 1111222322 233579999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccc
Q 005770 385 MAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRI 464 (678)
Q Consensus 385 ~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l 464 (678)
+||+||.+|+|+|.....+ .....+|++|+++|++++..++. .++. +..+|.....+++.+|+++|
T Consensus 302 ~~l~Da~~La~~L~~~~~~-------~~~~~~L~~Y~~~R~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~R~~~l 367 (388)
T PRK07494 302 LGLRDVATLVEIVEDRPED-------PGSAAVLAAYDRARRPDILSRTA------SVDL-LNRSLLSDFLPVQDLRAAGL 367 (388)
T ss_pred hhHHHHHHHHHHHHhcCCC-------cchHHHHHHHHHHHHHHHHHHHH------HHHH-HHHHHcCCchHHHHHHHHHH
Confidence 9999999999999874221 23478999999999999875443 2222 44566777888999999999
Q ss_pred cCCCCcch--hhHHhhhhh
Q 005770 465 PHPGRVGG--RFFIDLAMP 481 (678)
Q Consensus 465 ~~~~~~~~--~~~~~~~~~ 481 (678)
...+..+. +++++++|+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~ 386 (388)
T PRK07494 368 HLLYSFGPLRRLFMREGLG 386 (388)
T ss_pred HHHhhCHHHHHHHHHHhcC
Confidence 88877764 667776654
No 29
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=3.8e-38 Score=343.90 Aligned_cols=376 Identities=20% Similarity=0.202 Sum_probs=233.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~ 154 (678)
...+||+||||||+|+++|+.|+++|++|+|+|+++...... ...++.++++++++|+++ |+++++...+.... .
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~g~~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~-~ 90 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAA--KGQAYALSLLSARIFEGI--GVWEKILPQIGKFR-Q 90 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCC--CCcEEEechHHHHHHHHC--ChhhhhHhhcCCcc-E
Confidence 446899999999999999999999999999999987543211 112578999999999999 89999876543221 1
Q ss_pred eeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCeEEEEEcCC---
Q 005770 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENG--- 228 (678)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~v~v~~~dg--- 228 (678)
+. +.+.. +.....+.... ......++.+.+..|.+.|.+.+. +..++++++++++++++++++|+++++
T Consensus 91 ~~-~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~ 165 (415)
T PRK07364 91 IR-LSDAD-YPGVVKFQPTD---LGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQ 165 (415)
T ss_pred EE-EEeCC-CCceeeecccc---CCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcc
Confidence 21 22221 22222232111 011123455555578888887763 356888999999999989999988742
Q ss_pred cEEeccEEEEecCCCchhhhhhcC-CCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEEEe
Q 005770 229 QCYAGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHK 307 (678)
Q Consensus 229 ~~i~a~~vVgADG~~S~VR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 307 (678)
.+++||+||||||.+|.||+.++. .....|.+ .++...... +.......+..|...+ .++.+|.+++...|++...
T Consensus 166 ~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~g-~~~~~p~~~~~~~~~~~~~ 242 (415)
T PRK07364 166 QTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQ-SCVTATVKH-EAPHNDIAYERFWPSG-PFAILPLPGNRCQIVWTAP 242 (415)
T ss_pred eEEeeeEEEEeCCCCchhHHHhCCCceeecCCC-EEEEEEEEc-cCCCCCEEEEEecCCC-CeEEeECCCCCEEEEEECC
Confidence 369999999999999999999843 23333433 233222221 1111222333344444 3455677666655543321
Q ss_pred CCCCC--CC-CcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhh
Q 005770 308 EPAGG--VD-GPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGC 384 (678)
Q Consensus 308 ~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n 384 (678)
.+... .. ..+...+.+.+.+..|...+ .... ....+.+.. ....+|..+|++|+|||||.++|++|||+|
T Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~--~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n 315 (415)
T PRK07364 243 HAQAKALLALPEAEFLAELQQRYGDQLGKL----ELLG--DRFLFPVQL-MQSDRYVQHRLALVGDAAHCCHPVGGQGLN 315 (415)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhhhhcCc----eecC--CCceecchh-hhhhhhcCCcEEEEecccccCCCcccccHh
Confidence 11000 00 00111122222232222111 0011 111122222 235679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccc
Q 005770 385 MAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRI 464 (678)
Q Consensus 385 ~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l 464 (678)
+||+||.+|+++|...++.+. +.....+|+.|+++|++++..++.+++. +..+|..+..+..++|+..+
T Consensus 316 ~al~DA~~La~~L~~~~~~~~----~~~~~~~L~~Y~~~R~~~~~~~~~~s~~-------~~~~~~~~~~~~~~~r~~~~ 384 (415)
T PRK07364 316 LGIRDAAALAQVLQTAHQRGE----DIGSLAVLKRYERWRKRENWLILGFTDL-------LDRLFSNQWWPLVVVRRLGL 384 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcCC----CcccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHH
Confidence 999999999999988764321 1122589999999999999877655543 23344556667778888877
Q ss_pred cCCCCcch--hhHHhhhhh
Q 005770 465 PHPGRVGG--RFFIDLAMP 481 (678)
Q Consensus 465 ~~~~~~~~--~~~~~~~~~ 481 (678)
.+.+..+. +++++.+++
T Consensus 385 ~~~~~~~~~~~~~~~~~~g 403 (415)
T PRK07364 385 WLLRHVPPLKRLALRLMTG 403 (415)
T ss_pred HHHhhCHHHHHHHHHHHcC
Confidence 76665542 455555544
No 30
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=2.1e-37 Score=331.34 Aligned_cols=335 Identities=23% Similarity=0.308 Sum_probs=219.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
.||+||||||+|+++|+.|+++|++|+|+|+++.... .| .++.+.++++++|+++ |+++.+.+.+... ..+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~-~g---~~i~~~~~a~~~L~~l--Gl~~~~~~~~~~~-~~~~- 73 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRP-GG---QAIDVRGPALDVLERM--GLLAAAQEHKTRI-RGAS- 73 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC-Cc---eeeeeCchHHHHHHhc--CCHHHHHhhccCc-cceE-
Confidence 4899999999999999999999999999999865432 22 2577899999999999 7888887654322 2222
Q ss_pred eeecCCCceeeeccCCCc-ccccCCCeEEEeCHHHHHHHHHHhcC-CceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccE
Q 005770 158 LVDGISGSWYIKFDTFTP-AAEKGLPVTRVISRMTLQQILAKAVG-DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~r~~l~~~L~~~~~-~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~ 235 (678)
+.+. .+........... ....+.+ .+.+.|..|.+.|.+.+. +..++++++|+++++++++++++++||++++||+
T Consensus 74 ~~~~-~g~~~~~~~~~~~~~~~~~~~-~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adl 151 (372)
T PRK05868 74 FVDR-DGNELFRDTESTPTGGPVNSP-DIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDL 151 (372)
T ss_pred EEeC-CCCEEeecccccccCCCCCCc-eEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCE
Confidence 2222 2322221111000 0011122 357889999999887653 3468999999999998899999999999999999
Q ss_pred EEEecCCCchhhhhhcCCCCccccccEEEEEEecCCCCCcCCcceEEE-ecCceEEEEeeCCCCeEEEE-EEEeCCC--C
Q 005770 236 LIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVF-LGHKQYFVSSDVGAGKMQWY-AFHKEPA--G 311 (678)
Q Consensus 236 vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~w~-~~~~~~~--~ 311 (678)
||||||.+|.||+.+++........+..+..+.. .+.......+..| .+.+.+++.++..++...+. +.+.... .
T Consensus 152 vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (372)
T PRK05868 152 VIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFT-VPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRI 230 (372)
T ss_pred EEECCCCCchHHHHhcCCcccceeecceEEEEEE-cCCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEecCCccc
Confidence 9999999999999995433221111111121211 1121222233333 56666666677665433222 2222111 0
Q ss_pred CCCCcchhHHHHHHHhc--cCC-hhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHHH
Q 005770 312 GVDGPEGKKERLLKIFE--GWC-DNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIE 388 (678)
Q Consensus 312 ~~~~~~~~~~~l~~~~~--~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~ 388 (678)
.........+.+.+.|. .|. +.+.+.+...+. + .+......+..+|++|||+|+|||||.++|+.|||+|+||+
T Consensus 231 ~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~--~-~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~Ale 307 (372)
T PRK05868 231 DYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPD--F-YFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALL 307 (372)
T ss_pred ccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCc--e-eeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHH
Confidence 11112334567777776 565 333333322211 1 11111223456899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHH
Q 005770 389 DGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLA 435 (678)
Q Consensus 389 Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~ 435 (678)
||..|+++|... ..+.+++|+.||+.+||+..+.|.+.
T Consensus 308 Da~~La~~L~~~---------~~~~~~al~~ye~~~~~~~~~~q~~~ 345 (372)
T PRK05868 308 GAYILAGELKAA---------GDDYQLGFANYHAEFHGFVERNQWLV 345 (372)
T ss_pred HHHHHHHHHHhc---------CCCHHHHHHHHHHHHhHHHHHhhhhh
Confidence 999999999653 12468999999999999988776553
No 31
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=3.6e-38 Score=341.19 Aligned_cols=366 Identities=17% Similarity=0.168 Sum_probs=235.1
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcC----CcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhc
Q 005770 73 SENKKLRILVAGGGIGGLVFALAAKRKG----FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAG 148 (678)
Q Consensus 73 ~~~~~~~v~ivG~G~~G~~~a~~l~~~g----~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~ 148 (678)
+....+||+||||||+|+++|+.|+++| ++|+|+|+.+.+... . ..+++.++++++++|+++ |+|+.. .
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~-~-~~r~~~l~~~~~~~L~~l--g~~~~~---~ 79 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASA-N-DPRAIALSHGSRVLLETL--GAWPAD---A 79 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCC-C-CceEEEecHHHHHHHHhC--CCchhc---C
Confidence 4456689999999999999999999997 479999997543211 1 124678999999999999 777752 1
Q ss_pred cccccceeeeee-cCCCceeeeccCCCcccccCCC-eEEEeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEEeCCeEEEE
Q 005770 149 CVTGDRINGLVD-GISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVV 224 (678)
Q Consensus 149 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~~~~~~~~v~v~ 224 (678)
. ....+. +.+ +..+...+... ..+.+ .++.++|..|++.|.+.+.. ..++++++++++++++++|+++
T Consensus 80 ~-~~~~~~-~~~~~~~g~~~~~~~------~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~ 151 (398)
T PRK06996 80 T-PIEHIH-VSQRGHFGRTLIDRD------DHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLA 151 (398)
T ss_pred C-cccEEE-EecCCCCceEEeccc------ccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEE
Confidence 1 111222 122 12222222221 11222 47899999999999998743 4588899999999999999999
Q ss_pred EcCC---cEEeccEEEEecCC-CchhhhhhcC-CCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCe
Q 005770 225 LENG---QCYAGDLLIGADGI-WSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK 299 (678)
Q Consensus 225 ~~dg---~~i~a~~vVgADG~-~S~VR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (678)
+.++ ++++|||||+|||+ +|.+|+.++. .....|.+ .++.+..... ...+...+..|...+. +...|..++.
T Consensus 152 ~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~~~~~~~~G~-~~~lp~~~~~ 228 (398)
T PRK06996 152 LGTPQGARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQ-TAIVGTVTVS-APRPGWAWERFTHEGP-LALLPLGGPR 228 (398)
T ss_pred ECCCCcceEEeeeEEEECCCCCchHHHHHcCCCceeeecCC-eEEEEEEEcc-CCCCCEEEEEecCCCC-eEEeECCCCC
Confidence 9865 58999999999997 5888888743 34445554 4555443321 1122233444544444 4444665433
Q ss_pred ---EEEEEEEeCCCC---CCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccC
Q 005770 300 ---MQWYAFHKEPAG---GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVH 373 (678)
Q Consensus 300 ---~~w~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH 373 (678)
+.|++....... .........+.+.+.+..+...+ ....+ ...+.+. ...+.+|+.|||+|+|||||
T Consensus 229 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~--~~~~~l~-~~~~~~~~~grv~LiGDAAH 301 (398)
T PRK06996 229 QADYALVWCCAPDEAARRAALPDDAFLAELGAAFGTRMGRF----TRIAG--RHAFPLG-LNAARTLVNGRIAAVGNAAQ 301 (398)
T ss_pred CCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccccCce----EEecc--eEEEeee-cccccceecCCEEEEEhhhc
Confidence 333322211000 00001112233333333222111 00010 0112222 33456899999999999999
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCC
Q 005770 374 AMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGL 453 (678)
Q Consensus 374 ~~~P~~GqG~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (678)
.++|++|||+|+||+||.+|+|+|... + ....+|++|+++|++++..++..++. +..+|....
T Consensus 302 ~~~P~~GQG~n~ai~Da~~La~~L~~~--~--------~~~~~L~~Y~~~R~~~~~~~~~~s~~-------l~~~~~~~~ 364 (398)
T PRK06996 302 TLHPVAGQGLNLGLRDAHTLADALSDH--G--------ATPLALATFAARRALDRRVTIGATDL-------LPRLFTVDS 364 (398)
T ss_pred cCCcccchhHHHHHHHHHHHHHHHHhc--C--------CcHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCc
Confidence 999999999999999999999999652 1 12567999999999999888766654 233455666
Q ss_pred CcccccccccccCCCCcch--hhHHhhhh
Q 005770 454 GPLSFLTKFRIPHPGRVGG--RFFIDLAM 480 (678)
Q Consensus 454 ~~~~~~r~~~l~~~~~~~~--~~~~~~~~ 480 (678)
.++..+|+..+...+..++ +.+++++|
T Consensus 365 ~~~~~~R~~~l~~~~~~~~~k~~~~~~~~ 393 (398)
T PRK06996 365 RPLAHLRGAALTALEFVPPLKHALARQMM 393 (398)
T ss_pred hHHHHHHhHHHHHHhhCHHHHHHHHHHHc
Confidence 7788999999887777663 66666554
No 32
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=8.9e-38 Score=339.70 Aligned_cols=374 Identities=20% Similarity=0.211 Sum_probs=240.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcC--CcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccce
Q 005770 78 LRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g--~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~ 155 (678)
+||+||||||+|+++|+.|+++| ++|+|+|+.+...... ...++.++++++++|+++ |+++.+...+.... .+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~--~~~~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~-~~ 76 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSR--DPRASAIAAAARRMLEAL--GVWDEIAPEAQPIT-DM 76 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCC--CcceEEecHHHHHHHHHC--CChhhhhhhcCccc-EE
Confidence 79999999999999999999996 9999999986432111 123678999999999999 89998876553221 22
Q ss_pred eeeeecCCCc----eeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCCc
Q 005770 156 NGLVDGISGS----WYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQ 229 (678)
Q Consensus 156 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg~ 229 (678)
. +.+...+. ....+.. ....+.++.+.++|..|++.|.+.+. +..++++++|++++++++++.+++++|+
T Consensus 77 ~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~ 152 (403)
T PRK07333 77 V-ITDSRTSDPVRPVFLTFEG---EVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGS 152 (403)
T ss_pred E-EEeCCCCCCCccceEEecc---cccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCC
Confidence 1 22221111 1122211 11124556678999999999998873 3468889999999999999999999999
Q ss_pred EEeccEEEEecCCCchhhhhhcCC-CCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEEEeC
Q 005770 230 CYAGDLLIGADGIWSKVRKNLFGP-QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKE 308 (678)
Q Consensus 230 ~i~a~~vVgADG~~S~VR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 308 (678)
+++||+||+|||.+|.+|+.++.. ....|.. .++........ .........+. +++.+..+|..++...|.+....
T Consensus 153 ~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~-~~g~~~~~Pl~~~~~~~~~~~~~ 229 (403)
T PRK07333 153 VLEARLLVAADGARSKLRELAGIKTVGWDYGQ-SGIVCTVEHER-PHGGRAEEHFL-PAGPFAILPLKGNRSSLVWTERT 229 (403)
T ss_pred EEEeCEEEEcCCCChHHHHHcCCCcccccCCC-EEEEEEEEcCC-CCCCEEEEEeC-CCCceEEeECCCCCeEEEEECCH
Confidence 999999999999999999988432 2334444 33333222211 11122233333 34445556777776655442111
Q ss_pred CCCC---CCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhH
Q 005770 309 PAGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 385 (678)
Q Consensus 309 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ 385 (678)
.... ........+.+.+.+..+...+ .... ....+.+. ...+.+|..|||+|+|||||.++|++|||+|+
T Consensus 230 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~--~~~~~~~~-~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ 302 (403)
T PRK07333 230 ADAERLVALDDLVFEAELEQRFGHRLGEL----KVLG--KRRAFPLG-LTLARSFVAPRFALVGDAAHGIHPIAGQGLNL 302 (403)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhhhcCce----Eecc--CccEeech-hhhhhhccCCCEEEEechhhcCCCccccchhh
Confidence 0000 0000011122222232221110 0000 00111121 23456899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCccccccccccc
Q 005770 386 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 465 (678)
Q Consensus 386 gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 465 (678)
||+||.+|+|+|..+++.+. +...+.+|++|+++|++++..++..++. +..+|.....+...+|+..+.
T Consensus 303 ai~Da~~La~~L~~~~~~~~----~~~~~~~L~~Ye~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~r~~~~~ 371 (403)
T PRK07333 303 GLKDVAALAEVVVEAARLGL----DIGSLDVLERYQRWRRFDTVRMGVTTDV-------LNRLFSNDSTLLRSVRDIGLG 371 (403)
T ss_pred hHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHHH
Confidence 99999999999998875321 1234789999999999999877655543 223455556677788888776
Q ss_pred CCCCcch--hhHHhhhhh
Q 005770 466 HPGRVGG--RFFIDLAMP 481 (678)
Q Consensus 466 ~~~~~~~--~~~~~~~~~ 481 (678)
.....+. +++++++++
T Consensus 372 ~~~~~~~~~~~~~~~~~g 389 (403)
T PRK07333 372 LVDRLPKLKSFFIRQAAG 389 (403)
T ss_pred HHhcCHHHHHHHHHHHhC
Confidence 6655542 566666654
No 33
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=327.82 Aligned_cols=341 Identities=29% Similarity=0.392 Sum_probs=231.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccce
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~ 155 (678)
+..||+||||||+|+++|+.|+++|++|+|+|+++..... | .++.++++++++|+++ |+.+.+.+.+... ..+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~-g---~g~~l~~~~~~~l~~~--gl~~~~~~~~~~~-~~~ 75 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVY-G---AGITLQGNALRALREL--GVLDECLEAGFGF-DGV 75 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccC-C---ceeeecHHHHHHHHHc--CCHHHHHHhCCCc-cce
Confidence 3579999999999999999999999999999998654321 2 3678999999999999 7888887765322 122
Q ss_pred eeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCCcEEec
Q 005770 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (678)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a 233 (678)
. +.+ ..+.....++... .....++....+.|..|.+.|.+.+. +..++++++|++++.+++++++++.+|+++.+
T Consensus 76 ~-~~~-~~g~~~~~~~~~~-~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a 152 (375)
T PRK06847 76 D-LFD-PDGTLLAELPTPR-LAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRY 152 (375)
T ss_pred E-EEC-CCCCEEEecCccc-ccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEc
Confidence 1 222 1233222222110 00112233457899999999988763 34688999999999888899999999999999
Q ss_pred cEEEEecCCCchhhhhhcCC-CCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEEEeCCCCC
Q 005770 234 DLLIGADGIWSKVRKNLFGP-QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG 312 (678)
Q Consensus 234 ~~vVgADG~~S~VR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 312 (678)
|+||+|||.+|.+|+.+.+. ....|.+..++.+..... ... .....|.+++..+..+|..++...|+.....+...
T Consensus 153 d~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 229 (375)
T PRK06847 153 DLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRP-AEV--DRSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDNP 229 (375)
T ss_pred CEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCC-CCc--cceEEEeCCCcEEEEEcCCCCeEEEEEeccCcccc
Confidence 99999999999999988433 345666666665543321 111 12345666666666777776665554433222111
Q ss_pred CCCcchhHHHHHHHhccCChh-HHHHHHcCCh-hhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHHHHH
Q 005770 313 VDGPEGKKERLLKIFEGWCDN-VVDLILATDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 390 (678)
Q Consensus 313 ~~~~~~~~~~l~~~~~~~~~~-~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~Da 390 (678)
........+.+.+.+..|.+. .......... .....+.+.......+|..|||+|+|||||.|+|++|||+|+||+||
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA 309 (375)
T PRK06847 230 RIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDA 309 (375)
T ss_pred cCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHH
Confidence 111122234556667777652 2222222211 11112222322334569999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005770 391 YQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 439 (678)
Q Consensus 391 ~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~ 439 (678)
.+|+++|... ...+.+|+.|+++|++++..++..++...
T Consensus 310 ~~La~~L~~~----------~~~~~al~~Y~~~R~~r~~~~~~~s~~~~ 348 (375)
T PRK06847 310 IVLAEELARH----------DSLEAALQAYYARRWERCRMVVEASARIG 348 (375)
T ss_pred HHHHHHHhhC----------CcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999752 23578999999999999999988776433
No 34
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-37 Score=334.40 Aligned_cols=368 Identities=17% Similarity=0.184 Sum_probs=233.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccC-CcccccceeeChhHHHHHHhcChhHHHHHHHhccccccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~-~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~ 154 (678)
+++||+||||||+|+++|+.|+++|++|+|+||.+.+... .......+.++++++++|+++ |+++++...+......
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~l--Gl~~~~~~~~~~~~~~ 79 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRL--GAWDRIPEDEISPLRD 79 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHC--CChhhhccccCCccce
Confidence 4689999999999999999999999999999998753210 001112466899999999999 7888876543222122
Q ss_pred eeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCeEEEEEcCCcEE
Q 005770 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (678)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i 231 (678)
.. +.++.. .....++.. ......+++.++|..|.+.|.+.+. +..++++++|++++++++++.|++++|+++
T Consensus 80 ~~-~~~~~~-~~~~~~~~~---~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~ 154 (392)
T PRK09126 80 AK-VLNGRS-PFALTFDAR---GRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRL 154 (392)
T ss_pred EE-EEcCCC-CceeEeehh---hcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEE
Confidence 21 222221 112222211 0111234678899999999988762 356899999999999888899999999999
Q ss_pred eccEEEEecCCCchhhhhhcC-CCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEEEeCCC
Q 005770 232 AGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPA 310 (678)
Q Consensus 232 ~a~~vVgADG~~S~VR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 310 (678)
+||+||+|||.+|.+|+.++. .....+.. ..+......... .......|++.+..++.+|..++.+.|.+......
T Consensus 155 ~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~ 231 (392)
T PRK09126 155 TARLLVAADSRFSATRRQLGIGADMHDFGR-TMLVCRMRHELP--HHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQ 231 (392)
T ss_pred EeCEEEEeCCCCchhhHhcCCCccccccCC-eEEEEEEeccCC--CCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHH
Confidence 999999999999999999842 22233333 233322221111 11223345566666667787777666655332110
Q ss_pred CC---CCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHH
Q 005770 311 GG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAI 387 (678)
Q Consensus 311 ~~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl 387 (678)
.. ........+.+.+.+..+... +... .....+.+.. ....+|..+||+|+|||||.++|++|||+|+||
T Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~--~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai 304 (392)
T PRK09126 232 IEALLALDPEAFAAEVTARFKGRLGA----MRLV--SSRHAYPLVA-VYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGL 304 (392)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhhccC----eEEc--CCCcEeechH-HHHHHHhhcceEEEehhhhcCCCcccchhhhhH
Confidence 00 000000111122222211100 0000 0111112221 234578999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccccCC
Q 005770 388 EDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHP 467 (678)
Q Consensus 388 ~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~ 467 (678)
+||..|+++|..+++.+. +...+++|+.|+++|++++..++..++.+. .++.....+.+.+|+..+...
T Consensus 305 ~da~~la~~L~~~~~~~~----~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~r~~~~~~~ 373 (392)
T PRK09126 305 KGQDILARLILAAARRGQ----DIGAASLLERYERKHRLATRPLYHATNAIA-------ALYTDDRPPARLLRRAVLRAA 373 (392)
T ss_pred HHHHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHCCCchHHHHHHHHHHHHH
Confidence 999999999998875321 123478999999999999998877665432 234444556677787777665
Q ss_pred CCcc
Q 005770 468 GRVG 471 (678)
Q Consensus 468 ~~~~ 471 (678)
...+
T Consensus 374 ~~~~ 377 (392)
T PRK09126 374 NRFP 377 (392)
T ss_pred hhCh
Confidence 5543
No 35
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=2e-37 Score=330.87 Aligned_cols=341 Identities=27% Similarity=0.279 Sum_probs=206.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
++||+||||||+|+++|+.|+++|++|+||||++.+.... .++.++++++++|+.+ |+++.+.+.+........
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~----~~~~l~~~~~~~l~~l--gl~~~~~~~~~~~~~~~~ 74 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKG----RGIGLSPNSLRILQRL--GLLDEILARGSPHEVMRI 74 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSS----SSEEEEHHHHHHHHHT--TEHHHHHHHSEEECEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccc----cccccccccccccccc--cchhhhhhhcccccceee
Confidence 3799999999999999999999999999999987654332 2678999999999999 899998877632221111
Q ss_pred eeeecCCCce--ee-eccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcC---C
Q 005770 157 GLVDGISGSW--YI-KFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLEN---G 228 (678)
Q Consensus 157 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~d---g 228 (678)
.+.....+.. .. .............+....+.|..|++.|.+.+. ...+++++++++++++++++++.+.+ |
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g 154 (356)
T PF01494_consen 75 FFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDG 154 (356)
T ss_dssp EEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTC
T ss_pred EeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCC
Confidence 1111100100 00 000000001123344678999999999999862 25699999999999999998777654 3
Q ss_pred --cEEeccEEEEecCCCchhhhhhcCCC-CccccccEEEEEEe-cCCCCCcCCcceEEEecCceEEEEeeCCC-CeEEEE
Q 005770 229 --QCYAGDLLIGADGIWSKVRKNLFGPQ-EAIYSGYTCYTGIA-DFVPADIESVGYRVFLGHKQYFVSSDVGA-GKMQWY 303 (678)
Q Consensus 229 --~~i~a~~vVgADG~~S~VR~~l~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~ 303 (678)
++++||+||||||++|.||+.+.... ...+.....+..+. .....+.....+.....+...+..+|..+ ....|+
T Consensus 155 ~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 234 (356)
T PF01494_consen 155 EEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFV 234 (356)
T ss_dssp EEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEE
T ss_pred ceeEEEEeeeecccCcccchhhhccccccCccccccccccccccccccccccccccccccccccceeEeeccCCccceEE
Confidence 27999999999999999999984331 11111111222221 11111111112223334444445556555 333333
Q ss_pred EEEeCCCC-CCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcch
Q 005770 304 AFHKEPAG-GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQG 382 (678)
Q Consensus 304 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG 382 (678)
+....... .........+.+.+.+...... ............+.+. .....+|..|||+|+|||||.|+|++|||
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~grv~LiGDAAh~~~P~~GqG 310 (356)
T PF01494_consen 235 WFLPFDESKEERPEEFSPEELFANLPEIFGP---DLLETEIDEISAWPIP-QRVADRWVKGRVLLIGDAAHAMDPFSGQG 310 (356)
T ss_dssp EEEETTTTTCCSTHCHHHHHHHHHHHHHHHT---CHHHHEEEEEEEEEEE-EEEESSSEETTEEE-GGGTEEE-CCTSHH
T ss_pred Eeeeccccccccccccccccccccccccccc---cccccccccccccccc-cccccccccceeEEeccceeeecccccCC
Confidence 33332221 1111222333443333221110 0000011111222222 12345789999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHH
Q 005770 383 GCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGL 434 (678)
Q Consensus 383 ~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~ 434 (678)
+|+||+||..|+++|+.+.++. ..+++|+.|+++|++++..++++
T Consensus 311 ~n~Ai~da~~La~~L~~~~~g~-------~~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 311 INMAIEDAAALAELLAAALKGE-------ASEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhcCC-------cHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999988753 34789999999999999877654
No 36
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=5.4e-37 Score=331.12 Aligned_cols=358 Identities=20% Similarity=0.217 Sum_probs=226.2
Q ss_pred eEEEECCCHHHHHHHHHHHHcC-CcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 79 RILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g-~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
||+||||||+|+++|+.|+++| ++|+|+||.+.+....+...+++.++++++++|+++ |+++.+...+.... .+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--gl~~~~~~~~~~~~-~~~- 76 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKL--GLWPKLAPFATPIL-DIH- 76 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHC--CChhhhHhhcCccc-eEE-
Confidence 7999999999999999999999 999999998765432221123577999999999999 78888876543221 221
Q ss_pred eeec-CCCceeeeccCCCcccccCC-CeEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCeEEEEEcCCcEEe
Q 005770 158 LVDG-ISGSWYIKFDTFTPAAEKGL-PVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (678)
Q Consensus 158 ~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~ 232 (678)
+.+. ..+. ..+.. ...+. +.++.++|..|++.|.+.+. +..++++++|++++++++++++++++|++++
T Consensus 77 ~~~~~~~~~--~~~~~----~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ 150 (382)
T TIGR01984 77 VSDQGHFGA--THLRA----SEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLR 150 (382)
T ss_pred EEcCCCCce--EEech----hhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEE
Confidence 1211 1111 11111 11111 23578999999999999874 3468889999999998899999999998999
Q ss_pred ccEEEEecCCCchhhhhhcCC-CCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCC-eEEEEEEEeCCC
Q 005770 233 GDLLIGADGIWSKVRKNLFGP-QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG-KMQWYAFHKEPA 310 (678)
Q Consensus 233 a~~vVgADG~~S~VR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~ 310 (678)
||+||+|||.+|.||+.+... ....|.+ .++........ ......+..+. ....+..+|..++ .+.|++......
T Consensus 151 ad~vV~AdG~~S~vr~~l~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~-~~g~~~~~p~~~~~~~~~~~~~~~~~ 227 (382)
T TIGR01984 151 AKLLIAADGANSKVRELLSIPTEEHDYNQ-TALIANIRHEQ-PHQGCAFERFT-PHGPLALLPLKDNYRSSLVWCLPSKQ 227 (382)
T ss_pred eeEEEEecCCChHHHHHcCCCCcccccCC-EEEEEEEEecC-CCCCEEEEeeC-CCCCeEECcCCCCCCEEEEEECCHHH
Confidence 999999999999999998432 2333333 34443322211 11122223333 3334555676666 444433321110
Q ss_pred CC--CC-CcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHH
Q 005770 311 GG--VD-GPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAI 387 (678)
Q Consensus 311 ~~--~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl 387 (678)
.. .. ......+.+.+.+. +.+.+ +... .....+.+.. ....+|..+||+|+|||||.++|++|||+|+||
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~--~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al 300 (382)
T TIGR01984 228 ADTIANLPDAEFLAELQQAFG---WRLGK-ITQV--GERKTYPLKL-RIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGL 300 (382)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---hhccC-eEEc--CCccEeecch-hhhhheecCCEEEEeecccccCCccccchhhhH
Confidence 00 00 00111122222221 11100 0011 1112222222 245678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccccCC
Q 005770 388 EDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHP 467 (678)
Q Consensus 388 ~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~ 467 (678)
+||.+|+++|..+... ...+++|+.|+++|++++..++.+++.+. .+|.........+|+..+...
T Consensus 301 ~Da~~La~~L~~~~~~-------~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~r~~~~~~~ 366 (382)
T TIGR01984 301 RDVETLAEVLIDARID-------LGTYALLQEYLRRRQFDQFITIGLTDGLN-------RLFSNHIPLLRALRNLGLLAL 366 (382)
T ss_pred HHHHHHHHHHHHhccC-------ccCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHcCCchHHHHHHHHHHHHH
Confidence 9999999999876421 22378999999999999988877665432 233344445566777666555
Q ss_pred CCc
Q 005770 468 GRV 470 (678)
Q Consensus 468 ~~~ 470 (678)
...
T Consensus 367 ~~~ 369 (382)
T TIGR01984 367 ENF 369 (382)
T ss_pred hcC
Confidence 443
No 37
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=4.3e-36 Score=324.52 Aligned_cols=337 Identities=17% Similarity=0.161 Sum_probs=207.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
.+||+||||||+|+++|+.|+++|++|+|+|+.+.+... +. .++..++++++++|+++ |+++++.+.+.... .+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~-~~-~~a~~l~~~~~~~l~~l--Gl~~~l~~~~~~~~-~~~ 76 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVE-GR-IRAGVLEQGTVDLLREA--GVGERMDREGLVHD-GIE 76 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccc-cc-cceeEECHhHHHHHHHc--CChHHHHhcCCccC-cEE
Confidence 579999999999999999999999999999998743211 11 12345899999999999 89999987654322 222
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhc--CCceEEeCCeEEEEEE-eCCeEEEEE-cCCc--E
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV--GDEIILNESNVIDFKD-HGDKVSVVL-ENGQ--C 230 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~~~~-~~~~v~v~~-~dg~--~ 230 (678)
+... +. ...++.. ...+.+....+.|..|.+.|.+.+ .+..++++++++++++ +++.+.|++ .+|+ +
T Consensus 77 -~~~~--g~-~~~~~~~---~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~ 149 (392)
T PRK08243 77 -LRFD--GR-RHRIDLT---ELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHR 149 (392)
T ss_pred -EEEC--CE-EEEeccc---cccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEE
Confidence 2221 21 1222211 111122235667888888887664 2346889999999987 677777887 4664 7
Q ss_pred EeccEEEEecCCCchhhhhhcCCCCcccccc--EEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEEEeC
Q 005770 231 YAGDLLIGADGIWSKVRKNLFGPQEAIYSGY--TCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKE 308 (678)
Q Consensus 231 i~a~~vVgADG~~S~VR~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 308 (678)
++||+||||||++|.||+++.......|... ..+.++....+.. ...+.+......+.+.++.+.+...+++....
T Consensus 150 i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (392)
T PRK08243 150 LDCDFIAGCDGFHGVSRASIPAGALRTFERVYPFGWLGILAEAPPV--SDELIYANHERGFALCSMRSPTRSRYYLQCPL 227 (392)
T ss_pred EEeCEEEECCCCCCchhhhcCcchhhceecccCceEEEEeCCCCCC--CCceEEeeCCCceEEEecCCCCcEEEEEEecC
Confidence 9999999999999999999843222223221 2333332211111 11121222333344444433333333333322
Q ss_pred CCCCC-CCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHH
Q 005770 309 PAGGV-DGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAI 387 (678)
Q Consensus 309 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl 387 (678)
..... .......+.+.+.+..+.. ..+..........+. .......+|+.|||+|+|||||.++|++|||+|+||
T Consensus 228 ~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai 303 (392)
T PRK08243 228 DDKVEDWSDERFWDELRRRLPPEDA---ERLVTGPSIEKSIAP-LRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAA 303 (392)
T ss_pred CCCcccCChhHHHHHHHHhcCcccc---cccccCcccccccee-eeeceeccceeCCEEEEecccccCCCCcCcchhHHH
Confidence 11111 1111222334433332210 000000000000011 112234578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005770 388 EDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 439 (678)
Q Consensus 388 ~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~ 439 (678)
+||.+|+|+|+.+++++ .+++|++|+++|++++..++.++..+.
T Consensus 304 ~Da~~La~~L~~~~~~~--------~~~~L~~Ye~~r~~r~~~~~~~~~~~~ 347 (392)
T PRK08243 304 SDVRYLARALVEFYREG--------DTALLDAYSATALRRVWKAERFSWWMT 347 (392)
T ss_pred HHHHHHHHHHHHHhccC--------CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999876542 268999999999999998887765443
No 38
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=2.5e-36 Score=305.99 Aligned_cols=336 Identities=35% Similarity=0.474 Sum_probs=229.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||++||++|++|+|.|++|+|+|++..+ +..| .++.+.-+++++|+.+ ++.+.+...+.+...++.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~-R~~g---~si~L~~ng~~aLkai--~~~e~i~~~gip~~~~v~ 75 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP-RGEG---TSINLALNGWRALKAI--GLKEQIREQGIPLGGRVL 75 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc-ccCC---cceeehhhHHHHHHHc--ccHHHHHHhcCcccceee
Confidence 357999999999999999999999999999996544 3333 3677888899999999 788999888876655542
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCC------eEEEEEEeCCeEEEEEcCCcE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNES------NVIDFKDHGDKVSVVLENGQC 230 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~------~v~~~~~~~~~v~v~~~dg~~ 230 (678)
..+.+|+....+....+.. .....+.|..++.+|.++++...++++. ....++.......+.+.||.+
T Consensus 76 --~~~~sg~~~~~~~~~~~~~----~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~ 149 (420)
T KOG2614|consen 76 --IHGDSGKEVSRILYGEPDE----YILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTT 149 (420)
T ss_pred --eecCCCCeeEecccCCchH----HHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCcE
Confidence 3444566555554332211 1123456777777888877766677765 444455555667788999999
Q ss_pred EeccEEEEecCCCchhhhhhcCCCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEEEeCCC
Q 005770 231 YAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPA 310 (678)
Q Consensus 231 i~a~~vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 310 (678)
+++|++|||||++|.||+.|+... +.|.++.+|+++. +.+...+. ....|...+..+...+.+.....|+++...+-
T Consensus 150 ~~~dlligCDGa~S~Vr~~l~~~~-p~~~~~~ayrg~~-~~~~~~~~-~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~ 226 (420)
T KOG2614|consen 150 VKGDLLIGCDGAYSKVRKWLGFKE-PRYDGSQAYRGLG-FIPNGIPF-GKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSL 226 (420)
T ss_pred EEeeEEEEcCchHHHHHHHhcccC-CcceeEEEEeeee-eccCCCCc-ccceecccCCeEEEcccCCceEEEEEeecCCc
Confidence 999999999999999999995433 7888888898886 44443332 12222222222332233333334444432221
Q ss_pred C-----CCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCc----cccCCcEEEEccccCCCCCCCcc
Q 005770 311 G-----GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIF----TWGRGRVTLLGDSVHAMQPNLGQ 381 (678)
Q Consensus 311 ~-----~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~grv~LvGDAAH~~~P~~Gq 381 (678)
. ....++.......+.+..|.+.+.+.+.....+.+...++..+.+.+ +...++|+|+|||||.|.|+.||
T Consensus 227 t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQ 306 (420)
T KOG2614|consen 227 TSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQ 306 (420)
T ss_pred ccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccc
Confidence 1 11123333344566677788888888887777777766566655532 34567899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCCChhh--------HHHHHHHHHHHHhHH
Q 005770 382 GGCMAIEDGYQLAVELEKACKKSNESKTPID--------IVSALKSYERARRLR 427 (678)
Q Consensus 382 G~n~gl~Da~~La~~L~~~~~~~~~~~~~~~--------~~~~L~~Ye~eRr~~ 427 (678)
|+|+||+|+..|+++|.++.+.-+..+.... .+.++.+|..+|+-+
T Consensus 307 G~n~a~ED~~VLa~~L~~~~~d~s~~~~~~s~~~e~~~~ie~a~~~Y~~~r~~r 360 (420)
T KOG2614|consen 307 GGNCAFEDCVVLAECLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWRR 360 (420)
T ss_pred cccchHHHHHHHHHHHHHhccchhccccceecccchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998773222222222 566778888888543
No 39
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=327.74 Aligned_cols=374 Identities=18% Similarity=0.189 Sum_probs=234.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccC-CcccccceeeChhHHHHHHhcChhHHHHHHHhccccccce
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~-~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~ 155 (678)
.+||+||||||+|+++|+.|++.|++|+|+|+.+.+... .+...+.+.++++++++|+.+ |+++++..........+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~--g~~~~~~~~~~~~~~~~ 82 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERL--GVWQALDAARLAPVYDM 82 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHc--CchhhhhhhcCCcceEE
Confidence 579999999999999999999999999999998764321 111123477999999999998 78888754332222222
Q ss_pred eeeeecCCCceeeeccCCCcccccCCC-eEEEeCHHHHHHHHHHhcCC---ceEEeCCeEEEEEEeCCeEEEEEcCCcEE
Q 005770 156 NGLVDGISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCY 231 (678)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~~~~~~~~v~v~~~dg~~i 231 (678)
. +.....+ .+.+... ..+.| ..+.++|..|++.|.+.+.. ..++ ++++++++++++++.+++.+|+++
T Consensus 83 ~-~~~~~~~--~~~~~~~----~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~ 154 (388)
T PRK07608 83 R-VFGDAHA--RLHFSAY----QAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVL 154 (388)
T ss_pred E-EEECCCc--eeEeecc----ccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEE
Confidence 2 2221111 1222111 11222 25689999999999887732 4466 999999998888999999999899
Q ss_pred eccEEEEecCCCchhhhhhcCC-CCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEEEeCCC
Q 005770 232 AGDLLIGADGIWSKVRKNLFGP-QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPA 310 (678)
Q Consensus 232 ~a~~vVgADG~~S~VR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 310 (678)
+||+||+|||++|.+|+.++.. ....|.+ .++...... +.... .....|+.++..++.+|..++.+.+.+......
T Consensus 155 ~a~~vI~adG~~S~vr~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 231 (388)
T PRK07608 155 RADLVVGADGAHSWVRSQAGIKAERRPYRQ-TGVVANFKA-ERPHR-GTAYQWFRDDGILALLPLPDGHVSMVWSARTAH 231 (388)
T ss_pred EeeEEEEeCCCCchHHHhcCCCccccccCC-EEEEEEEEe-cCCCC-CEEEEEecCCCCEEEeECCCCCeEEEEECCHHH
Confidence 9999999999999999998532 2333433 222222221 11111 122344456666666788777654433221100
Q ss_pred CCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHHHHH
Q 005770 311 GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 390 (678)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~Da 390 (678)
. ........+.+.+.+..+.......+..... ...+++. ......|..+||+|+|||||.|+|++|||+|+||+||
T Consensus 232 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da 307 (388)
T PRK07608 232 A-DELLALSPEALAARVERASGGRLGRLECVTP--AAGFPLR-LQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDV 307 (388)
T ss_pred H-HHHHCCCHHHHHHHHHHHHHHhcCCceecCC--cceeecc-hhhhhhhhcCceEEEeccccccCCccccccchhHHHH
Confidence 0 0000011123333332221110000100000 0111221 1234679999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccccCCCCc
Q 005770 391 YQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRV 470 (678)
Q Consensus 391 ~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~ 470 (678)
.+|+++|....... +....++|++|+++|++++..++..++. +..+|..+..+...+|+..+...+..
T Consensus 308 ~~La~~L~~~~~~~-----~~~~~~~l~~Ye~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~r~~~~~~~~~~ 375 (388)
T PRK07608 308 AALADVLAGREPFR-----DLGDLRLLRRYERARREDILALQVATDG-------LQRLFALPGPLARWLRNAGMALVGAL 375 (388)
T ss_pred HHHHHHHHHhhccC-----CCccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHHHHHhhC
Confidence 99999998764211 1123589999999999999888766543 23345556667778888877666555
Q ss_pred ch--hhHHhhh
Q 005770 471 GG--RFFIDLA 479 (678)
Q Consensus 471 ~~--~~~~~~~ 479 (678)
+. +.+++.+
T Consensus 376 ~~~~~~~~~~~ 386 (388)
T PRK07608 376 PLVKRWLVRHA 386 (388)
T ss_pred hHHHHHHHHHh
Confidence 42 4444443
No 40
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=4e-36 Score=324.84 Aligned_cols=361 Identities=22% Similarity=0.252 Sum_probs=227.8
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccC-CcccccceeeChhHHHHHHhcChhHHHHHHH-hcccccccee
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EGQYRGPIQIQSNALAALEAIDLDVAEEVMR-AGCVTGDRIN 156 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~-~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~-~~~~~~~~~~ 156 (678)
||+||||||+|+++|+.|+++|++|+|+||.+.+... .+...+++.++++++++|+++ |+++++.+ .+. ....+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--Gl~~~~~~~~~~-~~~~~~ 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKL--GVWDKIEPDRAQ-PIRDIH 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHC--CchhhhhhhcCC-CceEEE
Confidence 7999999999999999999999999999999765322 111123578999999999999 88888876 432 222222
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCC---ceEEeCCeEEEEEEeCCeEEEEEcCCcEEec
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a 233 (678)
+++.. +.....+... .......++.++|..|.+.|.+.+.. ..++++++|++++.+++++.+++++|+++++
T Consensus 78 -~~~~~-~~~~~~~~~~---~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~ 152 (385)
T TIGR01988 78 -VSDGG-SFGALHFDAD---EIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRA 152 (385)
T ss_pred -EEeCC-CCceEEechh---hcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEe
Confidence 22221 1111222211 00112246789999999999998732 5688999999999988999999999999999
Q ss_pred cEEEEecCCCchhhhhhc-CCCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEEEeCCCCC
Q 005770 234 DLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG 312 (678)
Q Consensus 234 ~~vVgADG~~S~VR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 312 (678)
|+||+|||.+|.+|+.+. ......|.. .++....... .......+..+ .+++.++.+|..++...|.+........
T Consensus 153 ~~vi~adG~~S~vr~~l~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 229 (385)
T TIGR01988 153 RLLVGADGANSKVRQLAGIPTTGWDYGQ-SAVVANVKHE-RPHQGTAWERF-TPTGPLALLPLPDNRSSLVWTLPPEEAE 229 (385)
T ss_pred eEEEEeCCCCCHHHHHcCCCccccccCC-eEEEEEEEec-CCCCCEEEEEe-cCCCCEEEeECCCCCeEEEEECCHHHHH
Confidence 999999999999999984 333334433 2333222211 11111222223 3344455667777665554433211000
Q ss_pred ---CCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHHHH
Q 005770 313 ---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIED 389 (678)
Q Consensus 313 ---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~D 389 (678)
...+....+.+.+.+..+... +.. ......+.+.. ....+|..+||+|+|||||.|+|++|||+|+||+|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~-~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~d 302 (385)
T TIGR01988 230 RLLALSDEEFLAELQRAFGSRLGA----ITL--VGERHAFPLSL-THAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRD 302 (385)
T ss_pred HHHcCCHHHHHHHHHHHHhhhcCc----eEe--ccCcceeechh-hhhhheecCceEEEecccccCCccccchhhhhHHH
Confidence 000111112222222221110 000 01111122221 23457899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccccCCC
Q 005770 390 GYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPG 468 (678)
Q Consensus 390 a~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~ 468 (678)
|.+|+++|...++.+. +.....+|+.|+++|++++..++.+++.... ++.........+|+..+....
T Consensus 303 a~~La~~L~~~~~~~~----~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~r~~~~~~~~ 370 (385)
T TIGR01988 303 VAALAEVLEDARRRGE----DIGSPRVLQRYERRRRFDNAAMLGATDGLNR-------LFSNDFPPLRLLRNLGLRLLN 370 (385)
T ss_pred HHHHHHHHHHHHhcCC----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHcCCCcHHHHHHHHHHHHHh
Confidence 9999999998765321 1123789999999999999988877664332 233334445556665554443
No 41
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=5.2e-36 Score=325.00 Aligned_cols=367 Identities=18% Similarity=0.234 Sum_probs=228.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHc---CCcEEEEeccccc-ccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRK---GFEVLVFEKDMSA-IRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCV 150 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~---g~~~~~~e~~~~~-~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~ 150 (678)
|+.+||+||||||+|+++|+.|+++ |++|+|+||..+. ....+....++.++++++++|+++ |+++++.+.+..
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--gl~~~~~~~~~~ 78 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARL--GVWQALADCATP 78 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHC--CChhhhHhhcCC
Confidence 4568999999999999999999998 9999999996322 111121123577999999999999 899988775532
Q ss_pred cccceeeeeecCCCceeeeccCCCcccccCCC-eEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCeEEEEEc
Q 005770 151 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE 226 (678)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~v~v~~~ 226 (678)
. ..+. +.+.. ......+.. ...+.+ .++.++|..|++.|.+.+. +..++++++|++++.+++++.++++
T Consensus 79 ~-~~~~-~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~ 151 (395)
T PRK05732 79 I-THIH-VSDRG-HAGFVRLDA----EDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLD 151 (395)
T ss_pred c-cEEE-EecCC-CCceEEeeh----hhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEEC
Confidence 2 1121 11111 011111110 111222 2567899999999988763 3468889999999988899999999
Q ss_pred CCcEEeccEEEEecCCCchhhhhhcCC-CCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEE
Q 005770 227 NGQCYAGDLLIGADGIWSKVRKNLFGP-QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 305 (678)
Q Consensus 227 dg~~i~a~~vVgADG~~S~VR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 305 (678)
+|+++++|+||+|||.+|.||+.++.. ....+. ..++........ ......+..+...+ .+..+|..++...|++.
T Consensus 152 ~g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~g-~~~~~p~~~g~~~~~~~ 228 (395)
T PRK05732 152 DGETLTGRLLVAADGSHSALREALGIDWQQHPYE-QVAVIANVTTSE-AHQGRAFERFTEHG-PLALLPMSDGRCSLVWC 228 (395)
T ss_pred CCCEEEeCEEEEecCCChhhHHhhCCCccceecC-CEEEEEEEEecC-CCCCEEEEeecCCC-CEEEeECCCCCeEEEEE
Confidence 998999999999999999999988432 222333 233333322111 11112223333333 34455777776555443
Q ss_pred EeCCCCC---CCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcch
Q 005770 306 HKEPAGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQG 382 (678)
Q Consensus 306 ~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG 382 (678)
....... ........+.+.+.+. |. . ..+... .....+.+.. ....+|..+||+|+|||||.++|++|||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~-~~~~~~--~~~~~~~l~~-~~~~~~~~grv~LvGDAAh~~~P~~GqG 301 (395)
T PRK05732 229 HPLEDAEEVLSWSDAQFLAELQQAFG-WR--L-GRITHA--GKRSAYPLAL-VTAAQQISHRLALVGNAAQTLHPIAGQG 301 (395)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHHHHH-hh--h-cceeec--CCcceecccc-cchhhhccCcEEEEeecccccCCccccc
Confidence 3211000 0000011112222211 10 0 000000 0111122221 2345789999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccc
Q 005770 383 GCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKF 462 (678)
Q Consensus 383 ~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 462 (678)
+|+||+||.+|+++|..++++.. +...+++|+.|+++|++++..++.+++.. ..+|..+..+...+|+.
T Consensus 302 ~~~al~Da~~La~~L~~~~~~~~----~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~r~~ 370 (395)
T PRK05732 302 FNLGLRDVMSLAETLTQALARGE----DIGDYAVLQRYQQRRQQDREATIGFTDGL-------VRLFANRWAPLVVGRNL 370 (395)
T ss_pred cchHHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHcCCChHHHHHHHH
Confidence 99999999999999998765431 11235889999999999998777665542 23344455566777887
Q ss_pred cccCCCCcc
Q 005770 463 RIPHPGRVG 471 (678)
Q Consensus 463 ~l~~~~~~~ 471 (678)
.+......+
T Consensus 371 ~~~~~~~~~ 379 (395)
T PRK05732 371 GLMAMDLLP 379 (395)
T ss_pred HHHHHccCH
Confidence 776665544
No 42
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=3.4e-35 Score=316.57 Aligned_cols=337 Identities=16% Similarity=0.200 Sum_probs=205.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
.+||+||||||+|+++|+.|+++|++|+|+|+.+.+.... . .++..++++++++|+++ |+++++...+... ..+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~-~-~~a~~l~~~~~~~L~~l--Gl~~~l~~~~~~~-~~~~ 76 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLG-R-IRAGVLEQGTVDLLREA--GVDERMDREGLVH-EGTE 76 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCC-c-eeEeeECHHHHHHHHHC--CChHHHHhcCcee-cceE
Confidence 4799999999999999999999999999999987532110 1 11334899999999999 8999998765322 2222
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEE-eCCeEEEEEc-CCc--E
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKD-HGDKVSVVLE-NGQ--C 230 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~-~~~~v~v~~~-dg~--~ 230 (678)
+.++. ......+... ..+.+ .....+..|.+.|.+.+. ...++++++++.+.+ +++.+.|++. +|+ +
T Consensus 77 -~~~~~-~~~~~~~~~~----~~~~~-~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~ 149 (390)
T TIGR02360 77 -IAFDG-QRFRIDLKAL----TGGKT-VMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHR 149 (390)
T ss_pred -EeeCC-EEEEEecccc----CCCce-EEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEE
Confidence 22211 1112222211 11111 224467788888888753 235778888888755 5667778885 775 7
Q ss_pred EeccEEEEecCCCchhhhhhcCCCCcccccc--EEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCC-CeEEEEEEEe
Q 005770 231 YAGDLLIGADGIWSKVRKNLFGPQEAIYSGY--TCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGA-GKMQWYAFHK 307 (678)
Q Consensus 231 i~a~~vVgADG~~S~VR~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~ 307 (678)
++||+||||||.+|.||+++.......|.++ ..+.++....+.. ... ..+...+..+...+..+ ....|+....
T Consensus 150 i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (390)
T TIGR02360 150 LDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPPV--SHE-LIYSNHERGFALCSMRSATRSRYYVQVP 226 (390)
T ss_pred EEeCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCCCC--CCc-eEEEeCCCceEEEeccCCCcceEEEEcC
Confidence 9999999999999999999844333333332 2344443221111 111 12333333333334332 2223544332
Q ss_pred CCCCCCC-CcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHH
Q 005770 308 EPAGGVD-GPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMA 386 (678)
Q Consensus 308 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~g 386 (678)
....... ..+...+.+.+.+ .+.+.+.+...........++ ......+|..|||+|+|||||.|+|++|||+|+|
T Consensus 227 ~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~a 302 (390)
T TIGR02360 227 LTDKVEDWSDDRFWAELKRRL---PSEAAERLVTGPSIEKSIAPL-RSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLA 302 (390)
T ss_pred CCCChhhCChhHHHHHHHHhc---CchhhhhhccCCccceeeeeH-HhhccccCccCCEEEEEccccCCCCCcCCchhHH
Confidence 2111100 0111122233322 222222222211110000011 1133456899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005770 387 IEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAV 440 (678)
Q Consensus 387 l~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~~~~ 440 (678)
|+||.+|+++|...... +...+|+.|+++|++++..+++.++.+..
T Consensus 303 ieDA~~La~~L~~~~~~--------~~~~al~~Y~~~R~~r~~~~~~~s~~~~~ 348 (390)
T TIGR02360 303 ASDVHYLYEALLEHYQE--------GSSAGIEGYSARALARVWKAERFSWWMTS 348 (390)
T ss_pred HHHHHHHHHHHHHHhcc--------ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999875321 24789999999999999999888775443
No 43
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=1.7e-33 Score=310.71 Aligned_cols=340 Identities=15% Similarity=0.169 Sum_probs=211.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~ 153 (678)
....+||+||||||+|+++|+.|+++|++|+|+||........ .+..++++++++|+++ |+++.+.........
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~----~g~~L~p~g~~~L~~L--Gl~d~l~~~~~~~~~ 113 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERM----MGEFMQPGGRFMLSKL--GLEDCLEGIDAQKAT 113 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccc----cccccCchHHHHHHHc--CCcchhhhccCcccc
Confidence 3456899999999999999999999999999999975322111 1456899999999999 788887654332222
Q ss_pred ceeeeeecCCCce-eeeccCCCcccccC-CCeEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCe---EEEEE
Q 005770 154 RINGLVDGISGSW-YIKFDTFTPAAEKG-LPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDK---VSVVL 225 (678)
Q Consensus 154 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~---v~v~~ 225 (678)
.+..+.+ ++. ...++... .... .+.++.++|..|.+.|.+++. +..++.+ +++++..+++. |++..
T Consensus 114 ~~~v~~~---g~~~~~~~~~~~--~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~ 187 (514)
T PLN02985 114 GMAVYKD---GKEAVAPFPVDN--NNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKN 187 (514)
T ss_pred cEEEEEC---CEEEEEeCCCCC--cCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEc
Confidence 2221221 222 23333111 1111 234678999999999998763 3445544 67777655553 34444
Q ss_pred cCCc--EEeccEEEEecCCCchhhhhhcCCCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEE
Q 005770 226 ENGQ--CYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWY 303 (678)
Q Consensus 226 ~dg~--~i~a~~vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 303 (678)
.+|+ +++||+||+|||.+|.+|+.+.......+.....+. +... .. ......+.+++.+..++.++..++.+.+.
T Consensus 188 ~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~-~~~~-~~-~~~~~~~~~~~~~~~~l~ypi~~~~~~~~ 264 (514)
T PLN02985 188 SAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYI-SKNC-RL-EEPEKLHLIMSKPSFTMLYQISSTDVRCV 264 (514)
T ss_pred CCCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEE-Eccc-cC-CCCCcceEEcCCCceEEEEEeCCCeEEEE
Confidence 5665 467999999999999999999543332233222222 1111 11 11222355666666777778877776665
Q ss_pred EEEeCCCCCCCCcchhHHHHHHHhcc-----CChhHHHHHHc-CChh-hhhhcccccCCCCccccCCcEEEEccccCCCC
Q 005770 304 AFHKEPAGGVDGPEGKKERLLKIFEG-----WCDNVVDLILA-TDEE-AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQ 376 (678)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~ 376 (678)
.....+.. +.....++.+.+.. +.+.+.+.+.. .++. .+...+.. ..+...|..+|++|+|||||.++
T Consensus 265 ~~~~~~~~----~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~-~l~~~~~~~~~vvLiGDAaH~~~ 339 (514)
T PLN02985 265 FEVLPDNI----PSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTK-RMSATLSDKKGVIVLGDAFNMRH 339 (514)
T ss_pred EEEeCCCC----CCcChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcc-cccccccCCCCEEEEecccccCC
Confidence 54432211 11111223333222 22233333221 1111 11111111 12334567899999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005770 377 PNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 437 (678)
Q Consensus 377 P~~GqG~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~ 437 (678)
|++|||||+||+||..|++.|...-. ..+..+..++|++|+++|++++..++.+++.
T Consensus 340 P~~GQGmn~AleDA~vLa~lL~~~~~----~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~a 396 (514)
T PLN02985 340 PAIASGMMVLLSDILILRRLLQPLSN----LGNANKVSEVIKSFYDIRKPMSATVNTLGNA 396 (514)
T ss_pred CCccccHhHHHHHHHHHHHHhhhccc----ccchhHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 99999999999999999999976311 0122356789999999999999998877754
No 44
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=2.7e-33 Score=310.21 Aligned_cols=339 Identities=20% Similarity=0.215 Sum_probs=210.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc--cccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS--AIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~--~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~ 152 (678)
+..+||+||||||+|+++|+.|+++|++|+|+||++. +.+.. +..++++++++|+++ |+++.+...+.. .
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~-----G~~L~p~g~~~L~~L--GL~d~l~~i~~~-~ 102 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIV-----GELLQPGGVNALKEL--GMEECAEGIGMP-C 102 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhh-----hhhcCHHHHHHHHHC--CChhhHhhcCcc-e
Confidence 3468999999999999999999999999999999752 21212 346899999999999 788888655433 1
Q ss_pred cceeeeeecCCCce-eeeccCCCcccccCCCeEEEeCHHHHHHHHHHhc-----CCceEEeCCeEEEEEEeCC-------
Q 005770 153 DRINGLVDGISGSW-YIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV-----GDEIILNESNVIDFKDHGD------- 219 (678)
Q Consensus 153 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~-----~~~~i~~~~~v~~~~~~~~------- 219 (678)
..+. +.+. .+.. ...++ .+ ..+..+++..+.+.|.+.+ .+..++ ..+++++..++.
T Consensus 103 ~~~~-v~~~-~G~~~~i~~~-------~~-~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~-~~~v~~l~~~~~~~~~~v~ 171 (567)
T PTZ00367 103 FGYV-VFDH-KGKQVKLPYG-------AG-ASGVSFHFGDFVQNLRSHVFHNCQDNVTML-EGTVNSLLEEGPGFSERAY 171 (567)
T ss_pred eeeE-EEEC-CCCEEEecCC-------CC-CceeEeEHHHHHHHHHHHHHhhcCCCcEEE-EeEEEEeccccCccCCeeE
Confidence 2222 2222 1221 11111 11 1245678888888888766 233454 457888754433
Q ss_pred eEEEEEcC-----------------------CcEEeccEEEEecCCCchhhhhhcCCCCccccccEEEEEEe-cCCCCCc
Q 005770 220 KVSVVLEN-----------------------GQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIA-DFVPADI 275 (678)
Q Consensus 220 ~v~v~~~d-----------------------g~~i~a~~vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~-~~~~~~~ 275 (678)
+|+++..+ +++++||+||||||.+|.+|+.++... ..+.....+.+.. .....+.
T Consensus 172 gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~-~~~~~~s~~~g~~~~~~~lp~ 250 (567)
T PTZ00367 172 GVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYT-PASENHSHFVGLVLKNVRLPK 250 (567)
T ss_pred EEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCC-CCcCcceEEEEEEEecccCCC
Confidence 46665554 568999999999999999999995322 2222223333321 1111111
Q ss_pred CCcceEEEecCceEEEEeeCCCCeEEEEEEEeCCCCCCCCcchhHHHHHHHhcc-CChhHHHHHH-cCCh-hhhhhcccc
Q 005770 276 ESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEG-WCDNVVDLIL-ATDE-EAILRRDIY 352 (678)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~-~~~~-~~~~~~~~~ 352 (678)
....+.|++++..++.+|..++...+.+....+.. .......+.+.+.+.. +.+.+.+.+. .... ..+..++..
T Consensus 251 -~~~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~~~--p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~ 327 (567)
T PTZ00367 251 -EQHGTVFLGKTGPILSYRLDDNELRVLVDYNKPTL--PSLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNA 327 (567)
T ss_pred -CCeeEEEEcCCceEEEEEcCCCeEEEEEEecCCcC--CChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHh
Confidence 12234566777788888998887766554433211 1011122333333322 2333333221 1111 112122222
Q ss_pred cCCCCccccCCcEEEEccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhhcc-CCCCChhhHHHHHH----HHHHHHhHH
Q 005770 353 DRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKS-NESKTPIDIVSALK----SYERARRLR 427 (678)
Q Consensus 353 ~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~Da~~La~~L~~~~~~~-~~~~~~~~~~~~L~----~Ye~eRr~~ 427 (678)
..+..+|..+|++|+|||||.+||++|||||+||+||..|+++|....+.. .+.+...+...+|+ +|+++|+++
T Consensus 328 -~~p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~ 406 (567)
T PTZ00367 328 -RYPPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTH 406 (567)
T ss_pred -hCCCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHHHHhhhh
Confidence 223445788999999999999999999999999999999999997643211 01111224467777 999999999
Q ss_pred HHHHHHHHHH
Q 005770 428 VAVIHGLARS 437 (678)
Q Consensus 428 ~~~~~~~~~~ 437 (678)
+..++.++..
T Consensus 407 a~~i~~ls~a 416 (567)
T PTZ00367 407 ASTINILSWA 416 (567)
T ss_pred HHHHHHHHHH
Confidence 9988777654
No 45
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.96 E-value=1.9e-28 Score=246.27 Aligned_cols=386 Identities=21% Similarity=0.259 Sum_probs=245.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHc----CCcEEEEecccccc----cCCcccccc-eeeChhHHHHHHhcChhHHHHH
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMSAI----RGEGQYRGP-IQIQSNALAALEAIDLDVAEEV 144 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~----g~~~~~~e~~~~~~----~~~g~~~~~-~~l~~~~~~~L~~l~~gl~~~~ 144 (678)
....+||+||||||+|+++|+.|... -++|.|+|....+. .....+... ..+++.+...++.+ |+|+.+
T Consensus 33 ~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~--~awd~i 110 (481)
T KOG3855|consen 33 DTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSI--GAWDHI 110 (481)
T ss_pred CcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhc--CHHHHh
Confidence 34579999999999999999999864 56899999763321 111122222 35899999999999 899988
Q ss_pred HHhccccccceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHH-hc----CCceEEeCCeEEEEEEe--
Q 005770 145 MRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAK-AV----GDEIILNESNVIDFKDH-- 217 (678)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~-~~----~~~~i~~~~~v~~~~~~-- 217 (678)
.........++. .+++-+ ...+.|+. ...+.+.+++++...++..|.. .+ .+.++....++.++...
T Consensus 111 ~~~R~~~~~~~~-v~Ds~s-~a~I~~~~----d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~ 184 (481)
T KOG3855|consen 111 FHDRYQKFSRML-VWDSCS-AALILFDH----DNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEY 184 (481)
T ss_pred hhhcccccccee-eecccc-hhhhhhcc----ccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccc
Confidence 765433333332 344322 22344442 2233455788999998888884 22 23456667777776541
Q ss_pred ------CCeEEEEEcCCcEEeccEEEEecCCCchhhhhh-cCCCCccccccEEEEEEecCCC-CCcCCcceEEEecCceE
Q 005770 218 ------GDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCYTGIADFVP-ADIESVGYRVFLGHKQY 289 (678)
Q Consensus 218 ------~~~v~v~~~dg~~i~a~~vVgADG~~S~VR~~l-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 289 (678)
.....+++.||..+..||||||||.||.||+.. +....+.|.++ +..+...... ......+|+.|++.|++
T Consensus 185 l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~h-avVAtl~l~~~~~~~~~AwQRFlP~Gpi 263 (481)
T KOG3855|consen 185 LIKNDNGMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQH-AVVATLKLEEEAILNGVAWQRFLPTGPI 263 (481)
T ss_pred cCCCCCcceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccce-eeeEEEEecccccccchhHHhcCCCCce
Confidence 234678889999999999999999999999998 45567778763 3444433323 34456789999999887
Q ss_pred EEEe-eCCCCeEEEEEEEeCCCCCC-CCcchhHHHHHHHhccCCh------hHH-----------HHHHcCChh---hhh
Q 005770 290 FVSS-DVGAGKMQWYAFHKEPAGGV-DGPEGKKERLLKIFEGWCD------NVV-----------DLILATDEE---AIL 347 (678)
Q Consensus 290 ~~~~-~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~------~~~-----------~~l~~~~~~---~~~ 347 (678)
.+.. +.....+.|.........-. .+++.-.+.+...|..-.+ ... ..+...... ...
T Consensus 264 Allpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~p 343 (481)
T KOG3855|consen 264 ALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYP 343 (481)
T ss_pred eecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccC
Confidence 6553 33345567765311100000 0011111111111110000 000 000000000 000
Q ss_pred h---------cc--cccCCCCccccCCcEEEEccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHH
Q 005770 348 R---------RD--IYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSA 416 (678)
Q Consensus 348 ~---------~~--~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~ 416 (678)
. +. .....++..|...|+.|+|||||.+||++|||+|+|+.|+..|...|.+++..+.+ .+...-
T Consensus 344 p~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~D----lgS~~~ 419 (481)
T KOG3855|consen 344 PSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLD----LGSVEH 419 (481)
T ss_pred CeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhccc----ccchhh
Confidence 0 00 00112345788999999999999999999999999999999999999999887654 555788
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhcCCCCcccccccccccCCCCcch--hhHHhhh
Q 005770 417 LKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG--RFFIDLA 479 (678)
Q Consensus 417 L~~Ye~eRr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~--~~~~~~~ 479 (678)
|+.|+.+|.+....+ +...+. ++.++....+++-.+|..++.+.+..++ .++|..+
T Consensus 420 L~~y~~~~~~~N~~l------l~~vdk-l~klY~t~~p~vV~~rt~GL~~~n~l~PvKN~im~~~ 477 (481)
T KOG3855|consen 420 LEPYERERLQHNYVL------LGAVDK-LHKLYATSAPPVVLLRTFGLQLTNALAPVKNFIMVTA 477 (481)
T ss_pred hhHHHHHHhhhcchH------HHHHHH-HHHHHhccCCcEEEEeccchhhccccccHHHHHHHHH
Confidence 999999998776432 233333 5567778889999999999988777764 5666544
No 46
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.96 E-value=2.6e-26 Score=249.85 Aligned_cols=316 Identities=18% Similarity=0.210 Sum_probs=179.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~ 153 (678)
....+||+||||||||+++|+.|+++|++|+|+|++.......| ++ ++ .+.++.+ ++.+.+.... ....
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cg---g~--i~---~~~l~~l--gl~~~~~~~~-i~~~ 104 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCG---GA--IP---LCMVGEF--DLPLDIIDRK-VTKM 104 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCcc---cc--cc---HhHHhhh--cCcHHHHHHH-hhhh
Confidence 44569999999999999999999999999999999754322222 12 33 3556666 5555544321 1111
Q ss_pred ceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEe---CCeEEEEEcC-
Q 005770 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDH---GDKVSVVLEN- 227 (678)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~---~~~v~v~~~d- 227 (678)
.+ ... ....+.+... ....++..+++|..|++.|.+++. +..++.+ ++++++.. ++.+.+++.+
T Consensus 105 ~~---~~p--~~~~v~~~~~----~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~ 174 (450)
T PLN00093 105 KM---ISP--SNVAVDIGKT----LKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSY 174 (450)
T ss_pred eE---ecC--CceEEEeccc----CCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEec
Confidence 11 111 1112222210 011233457999999999998763 2346544 57777642 3456666532
Q ss_pred ------C--cEEeccEEEEecCCCchhhhhhcCCCCccccccEEEEEEecCCC--CCcCCcceEEEec----CceEEEEe
Q 005770 228 ------G--QCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVP--ADIESVGYRVFLG----HKQYFVSS 293 (678)
Q Consensus 228 ------g--~~i~a~~vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~ 293 (678)
| .+++||+||||||++|.||+.+.... ..+ ..++........ .+.......++++ ++.+.+.+
T Consensus 175 ~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~Wif 251 (450)
T PLN00093 175 DSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAGD-YDY--AIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVF 251 (450)
T ss_pred cccccCCCccEEEeCEEEEcCCcchHHHHHhCCCC-cce--eEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEE
Confidence 3 47999999999999999999984322 111 122222211111 1122222334443 33455666
Q ss_pred eCCCCeEEEEEEEeCCCCCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccC
Q 005770 294 DVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVH 373 (678)
Q Consensus 294 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH 373 (678)
|.++ .... ...... . ......+.+.+... ....+.......+....+.. .+..+|..+|++|+|||||
T Consensus 252 P~g~-~~~V-G~g~~~-~-----~~~~~~~~~~l~~~---~~~~l~~~~~~~~~~~~ip~-~~~~~~~~~~vlLvGDAAg 319 (450)
T PLN00093 252 PKCD-HVAV-GTGTVV-N-----KPAIKKYQRATRNR---AKDKIAGGKIIRVEAHPIPE-HPRPRRVRGRVALVGDAAG 319 (450)
T ss_pred ECCC-cEEE-EEEEcc-C-----CCChHHHHHHHHHH---hhhhcCCCeEEEEEEEEccc-ccccceeCCCcEEEecccc
Confidence 6653 2221 111000 0 01112222222110 00111001111111112221 2345788999999999999
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHH
Q 005770 374 AMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 429 (678)
Q Consensus 374 ~~~P~~GqG~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~ 429 (678)
.++|++|+||++||+++..+|+.+.+.++.+. .......|+.|++..+....
T Consensus 320 ~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~----~~~s~~~L~~Y~~~~~~~~g 371 (450)
T PLN00093 320 YVTKCSGEGIYFAAKSGRMCAEAIVEGSENGT----RMVDEADLREYLRKWDKKYW 371 (450)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHhcCC----CcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998876431 11124678999997776543
No 47
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.96 E-value=1.4e-27 Score=276.39 Aligned_cols=315 Identities=25% Similarity=0.266 Sum_probs=194.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccce
Q 005770 78 LRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~--g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~ 155 (678)
++|+||||||+||++|+.|+++ |++|+|+|+++... ..| .++.+++++++.|+.++..+.+.+...... ....
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~-~~G---~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~-~~~~ 75 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYD-TFG---WGVVFSDATLGNLRAADPVSAAAIGDAFNH-WDDI 75 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCc-ccC---cceEccHHHHHHHHhcCHHHHHHHHHhccc-CCce
Confidence 4799999999999999999998 89999999986432 222 367899999999988753244444332211 1111
Q ss_pred eeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCCcEEec
Q 005770 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (678)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a 233 (678)
. +.. .+.. . ...+.++ ..+.|..|.++|.+++. ...++++++++++++. ..++
T Consensus 76 ~-~~~--~g~~-~--------~~~g~~~-~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~------------~~~~ 130 (765)
T PRK08255 76 D-VHF--KGRR-I--------RSGGHGF-AGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL------------AADA 130 (765)
T ss_pred E-EEE--CCEE-E--------EECCeeE-ecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh------------hcCC
Confidence 1 110 1111 0 0122222 46899999999999873 3468889988776421 2579
Q ss_pred cEEEEecCCCchhhhhhcC-CC---CccccccEEEEEEecCCCCCcCCcceEEE-ecCce-EEEEeeCCCCeEEEEEEEe
Q 005770 234 DLLIGADGIWSKVRKNLFG-PQ---EAIYSGYTCYTGIADFVPADIESVGYRVF-LGHKQ-YFVSSDVGAGKMQWYAFHK 307 (678)
Q Consensus 234 ~~vVgADG~~S~VR~~l~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~w~~~~~ 307 (678)
|+||+|||.+|.||+++.. .. ...+.. ..|.+.... +....+... ...+. ....++..++...|++...
T Consensus 131 D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~-~~w~g~~~~----~~~~~~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~ 205 (765)
T PRK08255 131 DLVIASDGLNSRIRTRYADTFQPDIDTRRCR-FVWLGTHKV----FDAFTFAFEETEHGWFQAHAYRFDDDTSTFIVETP 205 (765)
T ss_pred CEEEEcCCCCHHHHHHHHhhcCCceecCCCc-eEEecCCCc----ccceeEEEEecCCceEEEEEeeeCCCCcEEEEEcC
Confidence 9999999999999998631 11 111222 223322111 111111000 11111 1223444444444544332
Q ss_pred CCC---CCC--CCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCc----EEEEccccCCCCCC
Q 005770 308 EPA---GGV--DGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGR----VTLLGDSVHAMQPN 378 (678)
Q Consensus 308 ~~~---~~~--~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~gr----v~LvGDAAH~~~P~ 378 (678)
... .+. .......+.+.+.|..|.+.. ..+..........|..+......+|..+| |+|+|||||.++|+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~-~li~~~~~~~~~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~ 284 (765)
T PRK08255 206 EEVWRAAGLDEMSQEESIAFCEKLFADYLDGH-PLMSNASHLRGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHTAHFS 284 (765)
T ss_pred HHHHHhcCCccCCHHHHHHHHHHHhHHhcCCC-cccccccccccceeeecceeccCCCccCCCcccEEEEEcCcccCCCC
Confidence 110 011 112334566777777775532 22222111111223444444567899999 99999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005770 379 LGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 437 (678)
Q Consensus 379 ~GqG~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~~~ 437 (678)
.|||+|+||+||..|+++|.... .+.+.+|+.|+++|++++..++..++.
T Consensus 285 ~GqG~~~aieDa~~La~~L~~~~---------~~~~~al~~ye~~R~~r~~~~~~~s~~ 334 (765)
T PRK08255 285 IGSGTKLALEDAIELARCLHEHP---------GDLPAALAAYEEERRVEVLRIQNAARN 334 (765)
T ss_pred cchhHHHHHHHHHHHHHHHHHcc---------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997641 135899999999999999999887764
No 48
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.96 E-value=7.8e-27 Score=242.55 Aligned_cols=288 Identities=20% Similarity=0.206 Sum_probs=174.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
+||+||||||+|+++|+.|+++|++|+|+|+...+.... .+..+.+++++.|... +.. .. .. . ....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~----~~~~~~~~~~~~l~~~--~~~-~~-~~--~--~~~~- 67 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKP----CGGALSPRVLEELDLP--LEL-IV-NL--V--RGAR- 67 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCccc----ccCccCHhHHHHhcCC--chh-hh-hh--e--eeEE-
Confidence 699999999999999999999999999999986543211 1345788888877665 221 11 10 0 0111
Q ss_pred eeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEEeCCeEEEEEcCC-cEEecc
Q 005770 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENG-QCYAGD 234 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~~~~~~~~v~v~~~dg-~~i~a~ 234 (678)
+.. ..+.. .... ...+..+.++|..|++.|.+.+.. ..++++++++++..+++++++.+.++ .+++||
T Consensus 68 ~~~-~~~~~-~~~~-------~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~ 138 (295)
T TIGR02032 68 FFS-PNGDS-VEIP-------IETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAK 138 (295)
T ss_pred EEc-CCCcE-EEec-------cCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeC
Confidence 111 11111 1111 012335789999999999998743 46889999999999888888877654 589999
Q ss_pred EEEEecCCCchhhhhhcCCCCccccccEEEEEEecCCCCCcCCcceEEEec----CceEEEEeeCCCCeEEEEEEEeCCC
Q 005770 235 LLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLG----HKQYFVSSDVGAGKMQWYAFHKEPA 310 (678)
Q Consensus 235 ~vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~w~~~~~~~~ 310 (678)
+||+|||.+|.+|+.+..... .+.....+.................++.+ ++.+.+.+|..++.+.+.+......
T Consensus 139 ~vv~a~G~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~ 217 (295)
T TIGR02032 139 IVIGADGSRSIVAKKLGLRKE-PRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE 217 (295)
T ss_pred EEEECCCcchHHHHhcCCCCC-CcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC
Confidence 999999999999998732211 11111222222221111122233334433 2356667777776554433222111
Q ss_pred CCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHHHHH
Q 005770 311 GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 390 (678)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~Da 390 (678)
......+.+.+..... +. +..........+.+.......+|..+||+|+|||||.++|+.|||||+||+||
T Consensus 218 ----~~~~~~~~~~~~~~~~-~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a 288 (295)
T TIGR02032 218 ----EGEDLKKYLKDFLARR-PE----LKDAETVEVIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSG 288 (295)
T ss_pred ----CCCCHHHHHHHHHHhC-cc----cccCcEEeeeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHH
Confidence 1122222232222211 11 11111111122223333345578899999999999999999999999999999
Q ss_pred HHHHHHH
Q 005770 391 YQLAVEL 397 (678)
Q Consensus 391 ~~La~~L 397 (678)
..+|+.|
T Consensus 289 ~~aa~~~ 295 (295)
T TIGR02032 289 DVAAEVI 295 (295)
T ss_pred HHHHhhC
Confidence 9999864
No 49
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.96 E-value=3e-26 Score=247.27 Aligned_cols=307 Identities=20% Similarity=0.241 Sum_probs=179.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
+||+||||||+|+++|+.|++.|++|+|+|++.......+ -.+++ ++++.+ ++.+++.... ... ..
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg-----~~i~~---~~l~~l--~i~~~~~~~~-~~~--~~- 66 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCG-----GAIPP---CLIEEF--DIPDSLIDRR-VTQ--MR- 66 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCc-----CCcCH---hhhhhc--CCchHHHhhh-cce--eE-
Confidence 6999999999999999999999999999999722111122 12444 456666 5555554321 111 11
Q ss_pred eeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcC------C-
Q 005770 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLEN------G- 228 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~d------g- 228 (678)
+... .+. ...... .....+..+++|..|++.|.+++. +..++. .+|+++..+++++.+++.+ |
T Consensus 67 ~~~~-~~~-~~~~~~-----~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~-~~v~~v~~~~~~~~v~~~~~~~~~~~~ 138 (388)
T TIGR02023 67 MISP-SRV-PIKVTI-----PSEDGYVGMVRREVFDSYLRERAQKAGAELIH-GLFLKLERDRDGVTLTYRTPKKGAGGE 138 (388)
T ss_pred EEcC-CCc-eeeecc-----CCCCCceEeeeHHHHHHHHHHHHHhCCCEEEe-eEEEEEEEcCCeEEEEEEeccccCCCc
Confidence 1111 111 111110 011222346999999999998762 234554 4699999888888888764 2
Q ss_pred -cEEeccEEEEecCCCchhhhhhcCCCCccccccEEEEEEecCCC--CCcCCcceEEEec----CceEEEEeeCCCCeEE
Q 005770 229 -QCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVP--ADIESVGYRVFLG----HKQYFVSSDVGAGKMQ 301 (678)
Q Consensus 229 -~~i~a~~vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 301 (678)
.+++|++||+|||.+|.||+.++......+ ..++........ .........++++ ++.+.+.+|..+ ...
T Consensus 139 ~~~i~a~~VI~AdG~~S~v~r~lg~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~-~~~ 215 (388)
T TIGR02023 139 KGSVEADVVIGADGANSPVAKELGLPKNLPR--VIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGD-HIA 215 (388)
T ss_pred ceEEEeCEEEECCCCCcHHHHHcCCCCCCcE--EEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCC-eeE
Confidence 379999999999999999999843222111 122222221111 1112222333332 334555666543 222
Q ss_pred EEEEEeCCCCCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcc
Q 005770 302 WYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQ 381 (678)
Q Consensus 302 w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~Gq 381 (678)
.... ... .....+.+++.+..+.. +............+. ..+..+|..+|++|+|||||.++|++||
T Consensus 216 vg~~-~~~------~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~ip-~~~~~~~~~~~v~lvGDAAg~v~P~tG~ 282 (388)
T TIGR02023 216 VGTG-TGT------HGFDAKQLQANLRRRAG-----LDGGQTIRREAAPIP-MKPRPRWDFGRAMLVGDAAGLVTPASGE 282 (388)
T ss_pred EeEE-ECC------CCCCHHHHHHHHHHhhC-----CCCceEeeeeeEecc-ccccccccCCCEEEEeccccCcCCcccc
Confidence 2111 110 11122333333322211 000000001111122 2344578889999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHH
Q 005770 382 GGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAV 430 (678)
Q Consensus 382 G~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~ 430 (678)
|+++||+++..+|+.|+++++.+ ....|+.|+++.+.....
T Consensus 283 GI~~A~~sg~~aa~~i~~~l~~~--------~~~~L~~Y~~~~~~~~~~ 323 (388)
T TIGR02023 283 GIYFAMKSGQMAAQAIAEYLQNG--------DATDLRHYERKFMKLYGT 323 (388)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988642 156799999998876543
No 50
>PRK11445 putative oxidoreductase; Provisional
Probab=99.95 E-value=1.2e-26 Score=246.56 Aligned_cols=307 Identities=15% Similarity=0.105 Sum_probs=171.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
+||+||||||+|+++|+.|+++ ++|+|+|+++...........+..++++++++|+++ |++...... .......
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~l--gl~~~~~~~---~~~~~~~ 75 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKD--GLTLPKDVI---ANPQIFA 75 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHc--CCCCCccee---eccccce
Confidence 7999999999999999999999 999999998643210000001345899999999999 443110000 0000000
Q ss_pred eeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC-CceEEeCCeEEEEEEeCCeEEEEE-cCCc--EEec
Q 005770 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG-DEIILNESNVIDFKDHGDKVSVVL-ENGQ--CYAG 233 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~~i~~~~~v~~~~~~~~~v~v~~-~dg~--~i~a 233 (678)
. ..+.+... .....+.+ .+.++|..|++.|.+... +..+++++++++++++++++.+++ ++|+ +++|
T Consensus 76 ~-------~~~~~~~~-~~~~~~~~-~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a 146 (351)
T PRK11445 76 V-------KTIDLANS-LTRNYQRS-YINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITA 146 (351)
T ss_pred e-------eEeccccc-chhhcCCC-cccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEe
Confidence 0 00111100 00011122 357999999999998653 346889999999999889988886 5664 7999
Q ss_pred cEEEEecCCCchhhhhhcCCCCccccccEEEEEEecCCCCCcCCcceEEEec---CceEEEEeeCCCCeEEEEEEEeCCC
Q 005770 234 DLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLG---HKQYFVSSDVGAGKMQWYAFHKEPA 310 (678)
Q Consensus 234 ~~vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~w~~~~~~~~ 310 (678)
|+||+|||++|.+|+.+..... ...+.++....... ... ..+..++. ...+.|.+|..+.. . +. ...+.
T Consensus 147 ~~vV~AdG~~S~vr~~l~~~~~--~~~~~~~~~~~~~~-~~~--~~~~~~f~~~~~~~~~W~~p~~~~~-~-~g-~~~~~ 218 (351)
T PRK11445 147 RYLVGADGANSMVRRHLYPDHQ--IRKYVAIQQWFAEK-HPV--PFYSCIFDNEITDCYSWSISKDGYF-I-FG-GAYPM 218 (351)
T ss_pred CEEEECCCCCcHHhHHhcCCCc--hhhEEEEEEEecCC-CCC--CCcceEEeccCCCceEEEeCCCCcE-E-ec-ccccc
Confidence 9999999999999999853221 11222222211111 010 00111111 11233333332211 1 10 00000
Q ss_pred CCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCcc--ccCCcEEEEccccCCCCCCCcchhhHHHH
Q 005770 311 GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFT--WGRGRVTLLGDSVHAMQPNLGQGGCMAIE 388 (678)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~grv~LvGDAAH~~~P~~GqG~n~gl~ 388 (678)
.......+.+.+.+........+.+. .....+.......+ +..+|++|||||||.++|++|||+|+|++
T Consensus 219 ---~~~~~~~~~l~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~ 289 (351)
T PRK11445 219 ---KDGRERFETLKEKLSAFGFQFGKPVK------TEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALD 289 (351)
T ss_pred ---cchHHHHHHHHHHHHhcccccccccc------cccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHH
Confidence 00011111111111110000000000 00000111111122 34589999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHH
Q 005770 389 DGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRV 428 (678)
Q Consensus 389 Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~ 428 (678)
|+..|++.|.+.. ...|+.|++..+...
T Consensus 290 sa~~la~~l~~~~------------~~~~~~y~~~~~~~~ 317 (351)
T PRK11445 290 SARILSEVLNKQP------------EKLNTAYWRKTRKLR 317 (351)
T ss_pred hHHHHHHHHHhcc------------cchHHHHHHHHHHHH
Confidence 9999999997642 456899999887654
No 51
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.94 E-value=1.3e-24 Score=234.47 Aligned_cols=311 Identities=18% Similarity=0.213 Sum_probs=175.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
+||+||||||+|+++|+.|+++|++|+|+||........+ +. ++ .+.|+.+ ++.+.+.... .....+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg---~~--i~---~~~l~~~--g~~~~~~~~~-i~~~~~-- 67 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCG---GA--IP---LCMVDEF--ALPRDIIDRR-VTKMKM-- 67 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCcc---cc--cc---HhhHhhc--cCchhHHHhh-hceeEE--
Confidence 5899999999999999999999999999999754322122 12 33 3556776 5555443321 111111
Q ss_pred eeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEE---eCCeEEEEE--cC---
Q 005770 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKD---HGDKVSVVL--EN--- 227 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~---~~~~v~v~~--~d--- 227 (678)
.. .......+... .....+.+.++|..|++.|.+.+. +..++.+ ++++++. .++.+.|++ .+
T Consensus 68 -~~--p~~~~~~~~~~----~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~ 139 (398)
T TIGR02028 68 -IS--PSNIAVDIGRT----LKEHEYIGMLRREVLDSFLRRRAADAGATLING-LVTKLSLPADADDPYTLHYISSDSGG 139 (398)
T ss_pred -ec--CCceEEEeccC----CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcc-eEEEEEeccCCCceEEEEEeeccccc
Confidence 11 01112222210 011122357999999999999873 2356655 4777753 234455554 22
Q ss_pred --C--cEEeccEEEEecCCCchhhhhhcCCCCccccccEEEEEEecCCCC--CcCCcceEEEec----CceEEEEeeCCC
Q 005770 228 --G--QCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPA--DIESVGYRVFLG----HKQYFVSSDVGA 297 (678)
Q Consensus 228 --g--~~i~a~~vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~ 297 (678)
| .+++|++||+|||++|.||+.+.... +.....+......... ........++++ ++.+.+.+|.++
T Consensus 140 ~~g~~~~i~a~~VIgADG~~S~v~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~ 216 (398)
T TIGR02028 140 PSGTRCTLEVDAVIGADGANSRVAKEIDAGD---YSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCD 216 (398)
T ss_pred cCCCccEEEeCEEEECCCcchHHHHHhCCCC---cceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCC
Confidence 3 37999999999999999999984321 1111222212221111 112223344443 345666677653
Q ss_pred CeEEEEEEEeCCCCCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCC
Q 005770 298 GKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQP 377 (678)
Q Consensus 298 ~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P 377 (678)
... +...... .....+.+.+.+.... ...+.......+....+.. .+..+|..+|++|||||||.++|
T Consensus 217 -~~~-VG~g~~~------~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~ip~-~~~~~~~~~~~llvGDAAg~v~P 284 (398)
T TIGR02028 217 -HVA-VGTGTVA------AKPEIKRLQSGIRARA---AGKVAGGRIIRVEAHPIPE-HPRPRRVVGRVALVGDAAGYVTK 284 (398)
T ss_pred -eEE-EEEEeCC------CCccHHHHHHhhhhhh---hhccCCCcEEEEEEEeccc-cccccEECCCEEEEEcCCCCCCc
Confidence 222 2111110 1112233333322110 0000000001111111221 23346788999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHH
Q 005770 378 NLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRV 428 (678)
Q Consensus 378 ~~GqG~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~ 428 (678)
++|+|+++||+++..+|+.+.++++.+. +......|+.|++..+...
T Consensus 285 ~tGeGI~~A~~sg~~aa~~i~~~~~~~~----~~~~~~~l~~Y~~~~~~~~ 331 (398)
T TIGR02028 285 CSGEGIYFAAKSGRMCAEAIVEESRLGG----AVTEEGDLAGYLRRWDKEY 331 (398)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhcCC----CcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876431 1123567999999766543
No 52
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.93 E-value=2.6e-23 Score=224.52 Aligned_cols=316 Identities=22% Similarity=0.187 Sum_probs=187.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccce
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~ 155 (678)
..+||+||||||||++||+.|++.|++|+|+||...+...... +-.+.+..++-+... ...++... +....+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~---~~~~~~~~l~~l~~~---~~~~i~~~--v~~~~~ 73 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC---GGGLSPRALEELIPD---FDEEIERK--VTGARI 73 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc---cceechhhHHHhCCC---cchhhhee--eeeeEE
Confidence 5699999999999999999999999999999998765332211 122555554443322 11111110 111111
Q ss_pred eeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCC-cEEe
Q 005770 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENG-QCYA 232 (678)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg-~~i~ 232 (678)
. .. .....+..+ .+.++.++|..|+++|.+.+. ...++.+++++++..+++++.+....+ .+++
T Consensus 74 ~--~~--~~~~~~~~~---------~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 140 (396)
T COG0644 74 Y--FP--GEKVAIEVP---------VGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVR 140 (396)
T ss_pred E--ec--CCceEEecC---------CCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEE
Confidence 1 00 111111111 133789999999999998873 345888999999999988876665544 6899
Q ss_pred ccEEEEecCCCchhhhhhcCCCCccccccEEEEEEecCCCCCcCCcceEEE-----ecCceEEEEeeCCCCeEEEEEEEe
Q 005770 233 GDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVF-----LGHKQYFVSSDVGAGKMQWYAFHK 307 (678)
Q Consensus 233 a~~vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~w~~~~~ 307 (678)
|++||+|||.+|.+++.++...............+. ..+ .+.....++ ..+.++.+.+|..++....-+...
T Consensus 141 a~~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~-~~~--~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~ 217 (396)
T COG0644 141 AKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVI-EVP--DDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVL 217 (396)
T ss_pred cCEEEECCCcchHHHHHhCCCCCChhheeEEeEEEE-ecC--CCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEe
Confidence 999999999999999999544111111111111111 112 111111222 234567777888776554443322
Q ss_pred CCCCCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCcc-ccCCcEEEEccccCCCCCCCcchhhHH
Q 005770 308 EPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFT-WGRGRVTLLGDSVHAMQPNLGQGGCMA 386 (678)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~grv~LvGDAAH~~~P~~GqG~n~g 386 (678)
... .. ..... ++++.|..... ....+............+....+... +..++++||||||.+++|++|.|+..|
T Consensus 218 ~~~--~~-~~~~~-~~l~~f~~~~~-~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A 292 (396)
T COG0644 218 LDD--PS-LSPFL-ELLERFKEHPA-IRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYA 292 (396)
T ss_pred cCC--cC-CCchH-HHHHHHHhCcc-cchhccCCceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHH
Confidence 221 11 11111 22222221111 11111111111112222222223333 778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHH
Q 005770 387 IEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 429 (678)
Q Consensus 387 l~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~ 429 (678)
|..|..+|+.|.+....+ ...|..|+++.+....
T Consensus 293 ~~sg~~Aa~~i~~~~~~~---------~~~l~~Y~~~~~~~~~ 326 (396)
T COG0644 293 IKSGKLAAEAIAEALEGG---------EEALAEYERLLRKSLA 326 (396)
T ss_pred HHHHHHHHHHHHHHHHcC---------hhHHHHHHHHHHHHHH
Confidence 999999999999986542 4667778888876543
No 53
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.92 E-value=3.4e-23 Score=225.46 Aligned_cols=326 Identities=17% Similarity=0.151 Sum_probs=176.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccc----c
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCV----T 151 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~----~ 151 (678)
..+||+||||||+|+++|+.|+++|++|+|+||.+.+..... .++. +...++ +.+ ...+...... .
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~--~gg~-l~~~~~---e~l----~~~~~~~~~~~~~~~ 73 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNV--TGGR-LYAHSL---EHI----IPGFADSAPVERLIT 73 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCccc--ccce-echhhH---HHH----hhhhhhcCcccceee
Confidence 469999999999999999999999999999999865432110 0111 233332 222 1111111111 0
Q ss_pred ccceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCCc
Q 005770 152 GDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQ 229 (678)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg~ 229 (678)
...+. +... .+.....+... ......+..+.+.|..|++.|.+.+. +..++.+++|++++.+++.+.+...+|.
T Consensus 74 ~~~~~-~~~~-~~~~~~~~~~~--~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~ 149 (428)
T PRK10157 74 HEKLA-FMTE-KSAMTMDYCNG--DETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGD 149 (428)
T ss_pred eeeEE-EEcC-CCceeeccccc--cccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCc
Confidence 01111 1111 11111221110 00111123578899999999998773 3468889999999887777765556777
Q ss_pred EEeccEEEEecCCCchhhhhhcCCCCccccccEEE--EEEecCCCCC-cC-------Cc-ceEEEec---Cc---eEEEE
Q 005770 230 CYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCY--TGIADFVPAD-IE-------SV-GYRVFLG---HK---QYFVS 292 (678)
Q Consensus 230 ~i~a~~vVgADG~~S~VR~~l~~~~~~~~~~~~~~--~~~~~~~~~~-~~-------~~-~~~~~~~---~~---~~~~~ 292 (678)
+++|++||+|||++|.+++.++......... .++ ...... +.. .+ .. ...++.+ .+ ..+ .
T Consensus 150 ~i~A~~VI~A~G~~s~l~~~lgl~~~~~~~~-~av~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~-~ 226 (428)
T PRK10157 150 VIEAKTVILADGVNSILAEKLGMAKRVKPTD-VAVGVKELIEL-PKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGF-L 226 (428)
T ss_pred EEECCEEEEEeCCCHHHHHHcCCCCCCCCcE-EEEEEEEEEEc-CHHHHHHhhccCCCCCeEEEEEECCCCCCcCcee-E
Confidence 8999999999999999999874222222221 221 111111 111 00 01 1111111 00 001 1
Q ss_pred eeCCCCeEEEEEEEeCCCCCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhccccc--CCCCccccCCcEEEEcc
Q 005770 293 SDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYD--RTPIFTWGRGRVTLLGD 370 (678)
Q Consensus 293 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~grv~LvGD 370 (678)
++. ...+..-+..... ..........++++.+.. .+.+...+.......+....+.. .....+...+++++|||
T Consensus 227 ~~~-~~~~svG~~~~~~--~~~~~~~~~~~~l~~~~~-~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGD 302 (428)
T PRK10157 227 YTN-ENTLSLGLVCGLH--HLHDAKKSVPQMLEDFKQ-HPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGD 302 (428)
T ss_pred EEc-CCeEEEEEEEehH--HhcccCCCHHHHHHHHHh-CchHHHHhCCCeEHHHHhhHhhcCCcccCCceecCCeEEEec
Confidence 111 1111111111000 000112233445555532 23333333222111122111111 12233567899999999
Q ss_pred ccCCCCC--CCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHH
Q 005770 371 SVHAMQP--NLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRV 428 (678)
Q Consensus 371 AAH~~~P--~~GqG~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~ 428 (678)
||..++| +.|+||++||..+..+|+.+.++++.+ +.....|..|++.-+...
T Consensus 303 AAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~------~~s~~~l~~Y~~~l~~~~ 356 (428)
T PRK10157 303 AAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSD------DFSKQKLAEYRQHLESGP 356 (428)
T ss_pred ccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcC------CcchhhHHHHHHHHHHhH
Confidence 9999998 599999999999999999999887653 123567999998766653
No 54
>PRK10015 oxidoreductase; Provisional
Probab=99.92 E-value=2.8e-23 Score=225.84 Aligned_cols=329 Identities=17% Similarity=0.140 Sum_probs=173.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHH--HHHhcccccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEE--VMRAGCVTGD 153 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~--~~~~~~~~~~ 153 (678)
..+||+||||||+|+++|+.|+++|++|+|+||.+.+..... .++. +...+++. +..++... +.. .....
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~--~gg~-i~~~~~~~---l~~~~~~~~~i~~--~~~~~ 75 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNM--TGGR-LYAHTLEA---IIPGFAASAPVER--KVTRE 75 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccc--cCce-eecccHHH---HcccccccCCccc--cccce
Confidence 468999999999999999999999999999999865422110 0111 22222222 21122110 000 01111
Q ss_pred ceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCCcEE
Q 005770 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (678)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i 231 (678)
.+. +.+.. +...+.+.... ........+.+.|..|++.|.+.+. +..++.+++|+++..+++.+.....++.++
T Consensus 76 ~~~-~~~~~-~~~~~~~~~~~--~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i 151 (429)
T PRK10015 76 KIS-FLTEE-SAVTLDFHREQ--PDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDIL 151 (429)
T ss_pred eEE-EEeCC-CceEeecccCC--CCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEE
Confidence 111 11111 11122222111 0000112578999999999988763 346888999999988777776444455689
Q ss_pred eccEEEEecCCCchhhhhhcCCCCc-cccccEEEEEEecCCCCCcCCcceEEEecCceEEE--------------EeeCC
Q 005770 232 AGDLLIGADGIWSKVRKNLFGPQEA-IYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFV--------------SSDVG 296 (678)
Q Consensus 232 ~a~~vVgADG~~S~VR~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 296 (678)
+|++||+|||.+|.+++.+...... ......++..+... +.+.-...+....+.+..++ .++.
T Consensus 152 ~A~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~-~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~~- 229 (429)
T PRK10015 152 EANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGL-TPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTN- 229 (429)
T ss_pred ECCEEEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEeC-CHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEEc-
Confidence 9999999999999999988422111 11111122211111 11100000000001111111 1111
Q ss_pred CCeEEEEEEEeCCCCCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhccccc--CCCCccccCCcEEEEccccCC
Q 005770 297 AGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYD--RTPIFTWGRGRVTLLGDSVHA 374 (678)
Q Consensus 297 ~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~grv~LvGDAAH~ 374 (678)
.+.+..-+..... ...........+++.|. .++.+.+.+......+.....+.. ....++...++++||||||..
T Consensus 230 ~d~v~vGv~~~~~--~~~~~~~~~~~~l~~~~-~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~ 306 (429)
T PRK10015 230 KDSISLGLVCGLG--DIAHAQKSVPQMLEDFK-QHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGF 306 (429)
T ss_pred CCcEEEEEEEehh--hhccCCCCHHHHHHHHh-hChHHHHHhcCCEEEEEeeEEcccCCcccCCccccCCeEEEeccccc
Confidence 1111111100000 00001123344445553 233344433222211111111111 112345678999999999999
Q ss_pred CCC--CCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHH
Q 005770 375 MQP--NLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLR 427 (678)
Q Consensus 375 ~~P--~~GqG~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~ 427 (678)
++| +.|+||++||.++..+|+.+.++++.+ +.....|..|++.-+..
T Consensus 307 v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~------d~s~~~l~~Y~~~~~~~ 355 (429)
T PRK10015 307 CLNLGFTVRGMDLAIASAQAAATTVIAAKERA------DFSASSLAQYKRELEQS 355 (429)
T ss_pred ccccCccccchhHHHHHHHHHHHHHHHHHhcC------CCccccHHHHHHHHHHC
Confidence 985 699999999999999999999887642 12356679999877754
No 55
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.90 E-value=1.1e-21 Score=195.30 Aligned_cols=344 Identities=18% Similarity=0.170 Sum_probs=212.4
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc-cccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccc
Q 005770 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS-AIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVT 151 (678)
Q Consensus 73 ~~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~-~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~ 151 (678)
......||+|||||.+|.++|..|+|.|-+|.|+||+-. |.+-.|+ -++|.+...|.+| |+.|-+.......
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGE-----llQPGG~~~L~~L--Gl~Dcve~IDAQ~ 113 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGE-----LLQPGGYLALSKL--GLEDCVEGIDAQR 113 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHH-----hcCcchhHHHHHh--CHHHHhhcccceE
Confidence 345668999999999999999999999999999999753 3344443 3899999999999 7777665432211
Q ss_pred ccceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhc---CCceEEeCCeEEEEEEeCCeEE-EEEc-
Q 005770 152 GDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS-VVLE- 226 (678)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~~~~~~~~v~-v~~~- 226 (678)
......+.++. +..+.++.. .-...+.+...+...|.+-|++.+ ++..+. ...|.++-++++.+. |+++
T Consensus 114 v~Gy~ifk~gk--~v~~pyP~~---~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~e-eGtV~sLlee~gvvkGV~yk~ 187 (509)
T KOG1298|consen 114 VTGYAIFKDGK--EVDLPYPLK---NFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLE-EGTVKSLLEEEGVVKGVTYKN 187 (509)
T ss_pred eeeeEEEeCCc--eeeccCCCc---CCCCCcccceeeccHHHHHHHHHHhcCCCeEEe-eeeHHHHHhccCeEEeEEEec
Confidence 11111123321 122333211 111223366778899999999986 344343 456777655555332 4443
Q ss_pred -CCc--EEeccEEEEecCCCchhhhhhcCCCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEE
Q 005770 227 -NGQ--CYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWY 303 (678)
Q Consensus 227 -dg~--~i~a~~vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 303 (678)
.|+ +..|.+-|.|||..|.+||.+......... ..+.++.-.-.....+...+..++.....+++++.....+..
T Consensus 188 k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~V~--S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl 265 (509)
T KOG1298|consen 188 KEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEEVP--SYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCL 265 (509)
T ss_pred CCCceEEEecceEEEecchhHHHHHHhcCCcccccc--hheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEE
Confidence 444 567999999999999999999543333222 123333222122223334456666666677778877776665
Q ss_pred EEEeCCCCCCCCcchhHHHHHHHhcc-CChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcch
Q 005770 304 AFHKEPAGGVDGPEGKKERLLKIFEG-WCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQG 382 (678)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG 382 (678)
+-++.+.-......+....+.+.... ..+.+.+.+.+.-+..-.+.......++......+++|+|||...-||++|.|
T Consensus 266 ~~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltggG 345 (509)
T KOG1298|consen 266 VDVPGQKLPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGG 345 (509)
T ss_pred EecCcccCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCCceEEEcccccccCCccCCc
Confidence 54432211111111122333333333 33344444333333222333333344555567789999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHH
Q 005770 383 GCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLA 435 (678)
Q Consensus 383 ~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~ 435 (678)
|..++.|+..|-+.|.-... -.+.......+++|...|+|....+..++
T Consensus 346 MtV~l~Di~lLr~ll~pl~d----L~d~ekv~~~i~sFy~~RKp~s~tINtLa 394 (509)
T KOG1298|consen 346 MTVALSDIVLLRRLLKPLPD----LSDAEKVSDYIKSFYWIRKPYSATINTLA 394 (509)
T ss_pred eEeehhHHHHHHHHhccccc----cccHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 99999999999998876322 12345567788999999999877665444
No 56
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.90 E-value=1.2e-21 Score=211.90 Aligned_cols=306 Identities=16% Similarity=0.133 Sum_probs=163.7
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceeee
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGL 158 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~~ 158 (678)
||+||||||+|+++|+.|++.|++|+|+|+.+..... ....++... ++.+ ++.+ +.... .. ..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~-----~~~~~~~~~---~~~~--~~~~-~~~~~--~~-~~--- 63 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN-----HTYGVWDDD---LSDL--GLAD-CVEHV--WP-DV--- 63 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC-----ccccccHhh---hhhh--chhh-HHhhc--CC-Cc---
Confidence 7999999999999999999999999999987542110 012233322 3333 2221 11110 00 00
Q ss_pred eecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEEe-CCeEEEEEcCCcEEeccE
Q 005770 159 VDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDH-GDKVSVVLENGQCYAGDL 235 (678)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~~~~~-~~~v~v~~~dg~~i~a~~ 235 (678)
....+... ......+ ...+++..|.+.|.+.+.. ..+ ...++++++.+ ++.+.+++++|++++|++
T Consensus 64 -------~~~~~~~~--~~~~~~~-~~~i~~~~l~~~l~~~~~~~gv~~-~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~ 132 (388)
T TIGR01790 64 -------YEYRFPKQ--PRKLGTA-YGSVDSTRLHEELLQKCPEGGVLW-LERKAIHAEADGVALSTVYCAGGQRIQARL 132 (388)
T ss_pred -------eEEecCCc--chhcCCc-eeEEcHHHHHHHHHHHHHhcCcEE-EccEEEEEEecCCceeEEEeCCCCEEEeCE
Confidence 00010000 0011222 2469999999999987632 334 46789898877 667888888888999999
Q ss_pred EEEecCCCchhhhhhcCCCCccccccEEEEEEecCCCCCcCCcceEEEe-cC--------ce--EEEEeeCCCCeEEEEE
Q 005770 236 LIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFL-GH--------KQ--YFVSSDVGAGKMQWYA 304 (678)
Q Consensus 236 vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~--~~~~~~~~~~~~~w~~ 304 (678)
||+|||.+|.+++..... ...+.....+.......+.+.+...+.-+. .+ .. +++.+|..++...+ .
T Consensus 133 VI~A~G~~s~~~~~~~~~-~~~~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v-~ 210 (388)
T TIGR01790 133 VIDARGFGPLVQYVRFPL-NVGFQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFI-E 210 (388)
T ss_pred EEECCCCchhcccccCCC-CceEEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEE-E
Confidence 999999999776543211 111211111111111111111110000010 00 11 45556665544322 1
Q ss_pred EEeCCCCCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhh
Q 005770 305 FHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGC 384 (678)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n 384 (678)
....... +....+.+.+.+..+.....-........ .+.+.+......+..+|+++||||||.++|++|+|+|
T Consensus 211 ~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~~i~~~---~~~~iP~~~~~~~~~~rv~liGdAAg~~~P~tG~Gi~ 283 (388)
T TIGR01790 211 ETSLADR----PALPRDRLRQRILARLNAQGWQIKTIEEE---EWGALPVGLPGPFLPQRVAAFGAAAGMVHPTTGYSVA 283 (388)
T ss_pred eccccCC----CCCCHHHHHHHHHHHHHHcCCeeeEEEee---eeEEEecccCCCccCCCeeeeechhcCcCCcccccHH
Confidence 1111100 11112233222221111000000000000 0111111111134789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHH
Q 005770 385 MAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 429 (678)
Q Consensus 385 ~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~ 429 (678)
.+++++..||+.|+++++.+ ...+++.|++..++...
T Consensus 284 ~al~~a~~la~~l~~~~~~~--------~~~~~~~~~~~~~~~~~ 320 (388)
T TIGR01790 284 RALSDAPGLAAAIAQALCQS--------SELATAAWDGLWPTERR 320 (388)
T ss_pred HHHHHHHHHHHHHHHHhccC--------HHHHHHHHHHhchHHHH
Confidence 99999999999999887542 36788888765555443
No 57
>PLN02463 lycopene beta cyclase
Probab=99.86 E-value=1.1e-19 Score=197.02 Aligned_cols=315 Identities=15% Similarity=0.167 Sum_probs=171.5
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccc
Q 005770 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (678)
Q Consensus 73 ~~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~ 152 (678)
+....+||+||||||+|+++|..|+++|++|.|+|+.+...... ...++ .+.++.+ |+.+.+.... ..
T Consensus 24 ~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~-----~~g~w---~~~l~~l--gl~~~l~~~w--~~ 91 (447)
T PLN02463 24 SKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPN-----NYGVW---VDEFEAL--GLLDCLDTTW--PG 91 (447)
T ss_pred ccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhcc-----ccchH---HHHHHHC--CcHHHHHhhC--CC
Confidence 34456899999999999999999999999999999875321100 11111 2346666 5655553321 11
Q ss_pred cceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCCcE
Q 005770 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQC 230 (678)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg~~ 230 (678)
..+ +.+.... .....++ ..|+|..|.+.|.+++. ...++ ..+|++++++++++.|++++|++
T Consensus 92 ~~v--~~~~~~~------------~~~~~~y-~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~ 155 (447)
T PLN02463 92 AVV--YIDDGKK------------KDLDRPY-GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVK 155 (447)
T ss_pred cEE--EEeCCCC------------ccccCcc-eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCE
Confidence 111 1111000 0112233 46899999999988763 23344 57999999999999999999999
Q ss_pred EeccEEEEecCCCchhhhhhcCCCCccccccEEEEEE-ecCCCCCcCCcceEE--E----ec--------C---ceEEEE
Q 005770 231 YAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGI-ADFVPADIESVGYRV--F----LG--------H---KQYFVS 292 (678)
Q Consensus 231 i~a~~vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~----~~--------~---~~~~~~ 292 (678)
++|++||+|||.+|++++.. .+...++....++ .+.....++.....+ | .+ . ..+++.
T Consensus 156 i~A~lVI~AdG~~s~l~~~~----~~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~ 231 (447)
T PLN02463 156 IQASLVLDATGFSRCLVQYD----KPFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYA 231 (447)
T ss_pred EEcCEEEECcCCCcCccCCC----CCCCccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEE
Confidence 99999999999999987532 1111222222222 222111111110000 0 00 0 124455
Q ss_pred eeCCCCeEEEEEEEeCCCCCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEcccc
Q 005770 293 SDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSV 372 (678)
Q Consensus 293 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAA 372 (678)
.|.+++.+..-...-. ..+....+.+.+.+..+.....-...+.... ....+..-.+ .....+|++++||||
T Consensus 232 ~P~~~~~~~vEeT~l~-----s~~~~~~~~lk~~L~~~l~~~Gi~~~~i~~~--E~~~IPmg~~-~~~~~~~~~~~G~aa 303 (447)
T PLN02463 232 MPFSSNRIFLEETSLV-----ARPGLPMDDIQERMVARLRHLGIKVKSVEED--EKCVIPMGGP-LPVIPQRVLGIGGTA 303 (447)
T ss_pred EecCCCeEEEEeeeee-----cCCCCCHHHHHHHHHHHHHHCCCCcceeeee--eeeEeeCCCC-CCCCCCCEEEecchh
Confidence 5555554221100000 0011112233222221110000000001001 1111111111 123467999999999
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCC--CChhhHH---HHHHHHHHHHhHH
Q 005770 373 HAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNES--KTPIDIV---SALKSYERARRLR 427 (678)
Q Consensus 373 H~~~P~~GqG~n~gl~Da~~La~~L~~~~~~~~~~--~~~~~~~---~~L~~Ye~eRr~~ 427 (678)
..++|.+|.|+..++..+..+|+.++++++.+... ....-.. +.|..|++.|+..
T Consensus 304 g~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~~~~~~ 363 (447)
T PLN02463 304 GMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERRRQRE 363 (447)
T ss_pred cCcCCCccccHHHHHHHHHHHHHHHHHHHhcCCCcCCChHHHHHHHHHHhCCHhHhHhHH
Confidence 99999999999999999999999999998754221 0111112 4566677766654
No 58
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.85 E-value=2e-19 Score=191.65 Aligned_cols=298 Identities=12% Similarity=0.119 Sum_probs=157.3
Q ss_pred eEEEECCCHHHHHHHHHHHHc--CCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 79 RILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~--g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
||+|||||++|+++|..|++. |++|.|+|+.+... +. ...+++...+. .......+.+...
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~---~~--~tw~~~~~~~~---~~~~~~~~~~v~~--------- 63 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIG---GN--HTWSFFDSDLS---DAQHAWLADLVQT--------- 63 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC---Cc--ccceecccccc---hhhhhhhhhhheE---------
Confidence 799999999999999999987 99999999975211 10 01111111000 0000001111111
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~v 236 (678)
.+. ...+.++.. ....+.++ ..|.+..|.+.|.+.++.. ++++++|+++ ++++|++ .+|++++|++|
T Consensus 64 -~W~----~~~v~~~~~--~~~l~~~Y-~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v--~~~~v~l--~dg~~~~A~~V 130 (370)
T TIGR01789 64 -DWP----GYEVRFPKY--RRKLKTAY-RSMTSTRFHEGLLQAFPEG-VILGRKAVGL--DADGVDL--APGTRINARSV 130 (370)
T ss_pred -eCC----CCEEECcch--hhhcCCCc-eEEEHHHHHHHHHHhhccc-EEecCEEEEE--eCCEEEE--CCCCEEEeeEE
Confidence 011 011111111 11223443 6899999999999888665 6779999988 4555554 78999999999
Q ss_pred EEecCCCchhhhhhcCCCCccccccEEEEEEe-cCCCCCcCCcceEE--Ee---cCce-EEEEeeCCCCeEEEEEEEeCC
Q 005770 237 IGADGIWSKVRKNLFGPQEAIYSGYTCYTGIA-DFVPADIESVGYRV--FL---GHKQ-YFVSSDVGAGKMQWYAFHKEP 309 (678)
Q Consensus 237 VgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~---~~~~-~~~~~~~~~~~~~w~~~~~~~ 309 (678)
|+|||.+|.-... .++....|+. ... .+++.....+ |. ..+. ++...|..++...|-.....+
T Consensus 131 I~A~G~~s~~~~~---------~~~Q~f~G~~~r~~-~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~ 200 (370)
T TIGR01789 131 IDCRGFKPSAHLK---------GGFQVFLGREMRLQ-EPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYAD 200 (370)
T ss_pred EECCCCCCCcccc---------ceeeEEEEEEEEEc-CCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccC
Confidence 9999999752211 1222222221 111 1122221111 11 2233 333367777766553211111
Q ss_pred CCCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCC-CCcccc-CCcEEEEccccCCCCCCCcchhhHHH
Q 005770 310 AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRT-PIFTWG-RGRVTLLGDSVHAMQPNLGQGGCMAI 387 (678)
Q Consensus 310 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~grv~LvGDAAH~~~P~~GqG~n~gl 387 (678)
. +....+.+...+..+.....-........+....++.... ....|. .++|+++|||||.++|.+|||++.++
T Consensus 201 --~---~~l~~~~l~~~l~~~~~~~g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~ 275 (370)
T TIGR01789 201 --D---PLLDRNALSQRIDQYARANGWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAV 275 (370)
T ss_pred --C---CCCCHHHHHHHHHHHHHHhCCCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHH
Confidence 0 1112233333333221100000000000011111111000 011122 45699999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHH
Q 005770 388 EDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAV 430 (678)
Q Consensus 388 ~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~ 430 (678)
+||..|++.+.. ++ ......+..|..+|+.+...
T Consensus 276 ~~a~~la~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~ 309 (370)
T TIGR01789 276 ENADALAAQPDL--SS-------EQLAAFIDSRARRHWSKTGY 309 (370)
T ss_pred HHHHHHHhccCc--Cc-------cchhhhhhHHHHHHHHHhHH
Confidence 999999988741 11 12245678899988877653
No 59
>PLN02697 lycopene epsilon cyclase
Probab=99.84 E-value=1.2e-18 Score=191.61 Aligned_cols=314 Identities=15% Similarity=0.126 Sum_probs=169.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~ 154 (678)
...+||+||||||+|+++|+.|++.|++|+|+|+..+.... ..++. ..++.+ ++.+.+...- ....
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n-------~GvW~---~~l~~l--gl~~~i~~~w--~~~~ 171 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-------YGVWE---DEFKDL--GLEDCIEHVW--RDTI 171 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCc-------cccch---hHHHhc--CcHHHHHhhc--CCcE
Confidence 34589999999999999999999999999999986332211 11332 245556 4443332210 0111
Q ss_pred eeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEE-EEEcCCcEE
Q 005770 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLENGQCY 231 (678)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~-v~~~dg~~i 231 (678)
+ +... +.. ...+.++ ..|+|..|.+.|.+++. +..+ .+++|++++.+++++. +++.+|.++
T Consensus 172 v--~~~~--~~~----------~~~~~~Y-g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i 235 (529)
T PLN02697 172 V--YLDD--DKP----------IMIGRAY-GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVI 235 (529)
T ss_pred E--EecC--Cce----------eeccCcc-cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEE
Confidence 1 1110 100 0012222 36899999999998763 2334 6789999988777765 456788899
Q ss_pred eccEEEEecCCCchhhhhhc-CCCCccccccEEEEEEecCCCCCcCCcceEEEec---------------CceEEEEeeC
Q 005770 232 AGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLG---------------HKQYFVSSDV 295 (678)
Q Consensus 232 ~a~~vVgADG~~S~VR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 295 (678)
+|++||+|||.+|. +.+. ......+....++.........+++... ..+++ ...+++.+|.
T Consensus 236 ~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~-~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~ 312 (529)
T PLN02697 236 PCRLATVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSL-MVFMDYRDYFKEKVSHLEAEYPTFLYAMPM 312 (529)
T ss_pred ECCEEEECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCCcch-heeeccccccccccccccCCCceEEEEeec
Confidence 99999999999993 2221 1111222222222222222211122111 12211 1124455565
Q ss_pred CCCeEEEEEEEeCCCCCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCC
Q 005770 296 GAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAM 375 (678)
Q Consensus 296 ~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~ 375 (678)
.++.+..-....... .....+...+.+...+....-. .......+....++. .+.... .++++++||||+.+
T Consensus 313 ~~~~~~VE~T~l~~~-~~l~~~~l~~~L~~~l~~~Gi~----~~~i~~~E~g~iPm~--g~~~~~-~~~vl~vG~AAG~v 384 (529)
T PLN02697 313 SSTRVFFEETCLASK-DAMPFDLLKKRLMSRLETMGIR----ILKTYEEEWSYIPVG--GSLPNT-EQKNLAFGAAASMV 384 (529)
T ss_pred CCCeEEEEEeeeccC-CCCCHHHHHHHHHHHHHhCCCC----cceEEEEEeeeecCC--CCCccc-CCCeeEeehhhcCC
Confidence 554432211110000 0000111122222222211000 001111111111111 122222 68999999999999
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhhccCCC---CChhhHHHHHHHHHHHHhHHHH
Q 005770 376 QPNLGQGGCMAIEDGYQLAVELEKACKKSNES---KTPIDIVSALKSYERARRLRVA 429 (678)
Q Consensus 376 ~P~~GqG~n~gl~Da~~La~~L~~~~~~~~~~---~~~~~~~~~L~~Ye~eRr~~~~ 429 (678)
||.+|.|+..++.+|..+|+.++++++.+... .........++.|++.......
T Consensus 385 hPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~ 441 (529)
T PLN02697 385 HPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERK 441 (529)
T ss_pred CCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHH
Confidence 99999999999999999999999998754200 0012457788888876665543
No 60
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.82 E-value=2.6e-18 Score=187.53 Aligned_cols=321 Identities=18% Similarity=0.204 Sum_probs=171.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcC---CcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHH--HHHhcccccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKG---FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEE--VMRAGCVTGD 153 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g---~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~--~~~~~~~~~~ 153 (678)
||+|||||+||.++|..|++.+ ++|+|||+...+..+.|+ +..|....+++.+ |+.+. +.+.....+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vGe-----~~~p~~~~~~~~l--gi~e~~~~~~~~~~~k~ 73 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVGE-----STLPSLRPFLRRL--GIDEADFMRACDATFKL 73 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSEE-----E--THHHHCHHHH--T--HHHHCHHCT-EEES
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCccc-----cchHHHHHHHHHc--CCChHHHHHHhCCeEec
Confidence 7999999999999999999999 999999998777666653 4667777788888 66665 5555433222
Q ss_pred ceeee-eecCCCceeeeccCCC----------------------------------------c-cc--ccCCCeEEEeCH
Q 005770 154 RINGL-VDGISGSWYIKFDTFT----------------------------------------P-AA--EKGLPVTRVISR 189 (678)
Q Consensus 154 ~~~~~-~~~~~~~~~~~~~~~~----------------------------------------~-~~--~~~~~~~~~i~r 189 (678)
.+... |..........|.... + .. .....++++++|
T Consensus 74 g~~f~~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR 153 (454)
T PF04820_consen 74 GIRFVNWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDR 153 (454)
T ss_dssp EEEEESSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEH
T ss_pred cEEeeecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeH
Confidence 22210 1111111111221100 0 00 112346899999
Q ss_pred HHHHHHHHHhc--CCceEEeCCeEEEEEEeCCe--EEEEEcCCcEEeccEEEEecCCCchhhhhhcCCCCccccc-cEEE
Q 005770 190 MTLQQILAKAV--GDEIILNESNVIDFKDHGDK--VSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSG-YTCY 264 (678)
Q Consensus 190 ~~l~~~L~~~~--~~~~i~~~~~v~~~~~~~~~--v~v~~~dg~~i~a~~vVgADG~~S~VR~~l~~~~~~~~~~-~~~~ 264 (678)
..|++.|++.+ .+..++.+ +|+++..++++ ..|++++|++++||++|+|+|.+|.+.+.+.......+.. ..+.
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d 232 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPND 232 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEE
T ss_pred HHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCcccccccccc
Confidence 99999999987 23345545 58888777665 3578889999999999999999999888752211111111 1111
Q ss_pred EEEecCCC-C-CcCCcceEEEecCceEEEEeeCCCCeEEEEEEEeCCCCCCCCcchhHHHHHHHhccCChhHHHHHHcCC
Q 005770 265 TGIADFVP-A-DIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATD 342 (678)
Q Consensus 265 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 342 (678)
..+....+ . ...... .....+.++++..|..+....-+++. .. .. .++...+.+.+.+.. ..
T Consensus 233 ~av~~~~~~~~~~~~~T-~~~a~~~GW~W~IPL~~~~~~G~V~s-~~--~~-s~~~A~~~l~~~l~~-----------~~ 296 (454)
T PF04820_consen 233 RAVAVQVPNEDPPEPYT-RSTAFEAGWIWYIPLQNRRGSGYVYS-SD--FI-SDDEAEAELLAYLGG-----------SP 296 (454)
T ss_dssp EEEEEEEE-SSCTTSSE-EEEEESSEEEEEEEESSEEEEEEEEE-TT--TS-HHHHHHHHHHHHHTC-----------HC
T ss_pred EEEEEecCcCCCCCCce-eEEecCCceEEEccCCCcceEEEEec-cc--cC-CHHHHHHHHHHhcch-----------hh
Confidence 22211111 1 111111 22333456667777776544422221 11 00 011111222222111 00
Q ss_pred hhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHH
Q 005770 343 EEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYER 422 (678)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~ 422 (678)
........+.. ....+...+|+++|||||..++|+.++|+.+++..+..|+..|.... ..+..++.|++
T Consensus 297 ~~~~~~i~~~~-g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~~----------~~~~~~~~Yn~ 365 (454)
T PF04820_consen 297 EAEPRHIRFRS-GRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDDD----------FSPAALDRYNR 365 (454)
T ss_dssp TTSCEEEE-S--EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCTT----------CCHHHHHHHHH
T ss_pred hcchhhhcccc-cchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccCC----------CCHHHHHHHHH
Confidence 00000000100 11234456789999999999999999999999997777777665421 12678899999
Q ss_pred HHhHHHHHHHHH
Q 005770 423 ARRLRVAVIHGL 434 (678)
Q Consensus 423 eRr~~~~~~~~~ 434 (678)
..+.....+.++
T Consensus 366 ~~~~~~~~~~~f 377 (454)
T PF04820_consen 366 RMRREYERIRDF 377 (454)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887766544
No 61
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.72 E-value=9.4e-16 Score=164.27 Aligned_cols=280 Identities=16% Similarity=0.146 Sum_probs=150.0
Q ss_pred eEEEECCCHHHHHHHHHH--HHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 79 RILVAGGGIGGLVFALAA--KRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l--~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
||+||||||||+++|..| ++.|.+|+|+|+++....... . ..+.+.. .+ +..+.+..... . ..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~-~--tW~~~~~------~~--~~~~~~v~~~w-~--~~- 65 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPND-R--TWCFWEK------DL--GPLDSLVSHRW-S--GW- 65 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCC-c--ccccccc------cc--cchHHHHheec-C--ce-
Confidence 899999999999999999 888999999998764411110 0 0111111 11 11222222211 0 11
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC-CceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG-DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~ 235 (678)
.+.++.... ....++ ..+|++..|.+.|.+.+. ...++.+.+|++++.+++++.+++++|++++|++
T Consensus 66 ----------~v~~~~~~~-~~~~~~-Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~ 133 (374)
T PF05834_consen 66 ----------RVYFPDGSR-ILIDYP-YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARV 133 (374)
T ss_pred ----------EEEeCCCce-EEcccc-eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeE
Confidence 111111110 001133 358999999999999875 3356779999999999999999999999999999
Q ss_pred EEEecCCCchhhhhhcCCCCccccccEEEEEEecCCCCCcCCcceEEE-ec----CceEEEEeeCCCCeEEEE--EEEeC
Q 005770 236 LIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVF-LG----HKQYFVSSDVGAGKMQWY--AFHKE 308 (678)
Q Consensus 236 vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~w~--~~~~~ 308 (678)
||+|+|..|...+.. .++....+..-.+...-+.....+.-| .. ...++...|...+....- .+...
T Consensus 134 VvDa~g~~~~~~~~~------~~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~ 207 (374)
T PF05834_consen 134 VVDARGPSSPKARPL------GLQHFYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSPR 207 (374)
T ss_pred EEECCCccccccccc------ccceeEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcCC
Confidence 999999877632221 111111111111110011111111111 11 123455556665553221 11111
Q ss_pred CCCCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHHH
Q 005770 309 PAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIE 388 (678)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~ 388 (678)
+....+.+.+.+..+.....-...+....+....++.. ....+-..++++.+|+||+.++|.+|.++-.+++
T Consensus 208 -------~~~~~~~~~~~l~~~l~~~g~~~~~i~~~E~G~IPm~~-~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~ 279 (374)
T PF05834_consen 208 -------PALPEEELKARLRRYLERLGIDDYEILEEERGVIPMTT-GGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQR 279 (374)
T ss_pred -------CCCCHHHHHHHHHHHHHHcCCCceeEEEeecceeeccc-CCCccccCCCeeeEEccccCCCCcccHHHHHHHH
Confidence 11112233333222111100000000011111112210 1222334667999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005770 389 DGYQLAVELEK 399 (678)
Q Consensus 389 Da~~La~~L~~ 399 (678)
.+..+|..|.+
T Consensus 280 ~a~~ia~~l~~ 290 (374)
T PF05834_consen 280 QADAIADALAK 290 (374)
T ss_pred HHHHHHHHHhh
Confidence 99888888875
No 62
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.68 E-value=2.6e-15 Score=148.03 Aligned_cols=196 Identities=21% Similarity=0.163 Sum_probs=119.0
Q ss_pred eccEEEEecCCCchhhhhhcCCCCccccccEEEEEEecCCCCCcCCcceEEEecCceEEEEeeCCCCeEEEEEEEeCCCC
Q 005770 232 AGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG 311 (678)
Q Consensus 232 ~a~~vVgADG~~S~VR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 311 (678)
.|+++|.|||..|.+|+.+.. ..+. ..+.++|+.-....-.....-+.++++...++.+++.....+..+.++.+.-
T Consensus 1 ~A~LtivaDG~~S~fRk~l~~-~~~~--v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~ 77 (276)
T PF08491_consen 1 FAPLTIVADGCFSKFRKELSD-NKPQ--VRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKL 77 (276)
T ss_pred CCCEEEEecCCchHHHHhhcC-CCCc--eeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCcc
Confidence 378999999999999999852 2222 2234444421111111223345667776777788888877766655543211
Q ss_pred CCCCcchhHHHHHHHhccC-ChhHHHHHH-cCChhhhhhcccccCCCCccccCCcEEEEccccCCCCCCCcchhhHHHHH
Q 005770 312 GVDGPEGKKERLLKIFEGW-CDNVVDLIL-ATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIED 389 (678)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~-~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~D 389 (678)
......+..+.+.+.+... .+.+.+.+. ..++..+ +.......+.......+++++|||++..||++|+||+.|+.|
T Consensus 78 P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~ri-rsMPn~~lp~~~~~~~G~vllGDA~nmrHPLTGgGMTVAl~D 156 (276)
T PF08491_consen 78 PSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRI-RSMPNSFLPASPNWKPGVVLLGDAANMRHPLTGGGMTVALND 156 (276)
T ss_pred CCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCc-ceecccccCCCCCCCCCEEEEehhhcCcCCccccchhhHHHH
Confidence 1001112233344333322 233333222 2222222 222222334444556889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhHHHHHHHHHH
Q 005770 390 GYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLA 435 (678)
Q Consensus 390 a~~La~~L~~~~~~~~~~~~~~~~~~~L~~Ye~eRr~~~~~~~~~~ 435 (678)
+..|++.|... .+-.+.....+.+++|+.+|++....+.-++
T Consensus 157 v~lL~~lL~~~----~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA 198 (276)
T PF08491_consen 157 VVLLRDLLSPI----PDLSDTKAVLEALKKFHWKRKPLSSVINILA 198 (276)
T ss_pred HHHHHHHHhhh----cCcccHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 99999999876 1122345578899999999999987655444
No 63
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.66 E-value=3.1e-16 Score=124.34 Aligned_cols=67 Identities=39% Similarity=0.724 Sum_probs=62.4
Q ss_pred EEeCCCCCCCCCcceEEeCCCcccccceEEEEeCC-EEEEEeCCCCCceEecCCCCceeecCCCCcEEeCCCCEEEEC
Q 005770 570 YLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDG-AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFG 646 (678)
Q Consensus 570 ~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~~~-~~~i~Dl~S~nGt~v~~~~~~~~~~~~~~~~~l~~gd~i~~g 646 (678)
++|||++. |+++++++.|||+||.|.++++ .|+|+|++|+|||||||. ++.++++++|++||+|+||
T Consensus 1 ~~iGR~~~-----~di~l~~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~-----~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPD-----CDIVLPDPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQ-----RLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTT-----SSEEETSTTSSTTSEEEEEETTEEEEEEESSSSS-EEETTE-----EESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCC-----CCEEECCHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCE-----EcCCCCEEECCCCCEEEcC
Confidence 57999977 9999999999999999999988 999999999999999999 9999999999999999998
No 64
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.31 E-value=2.2e-11 Score=104.93 Aligned_cols=78 Identities=41% Similarity=0.679 Sum_probs=69.9
Q ss_pred CcEEeCCCCCCCCCcc-eEEeCCCcccccceEEEEeC-CEEEEEeCCCCCceEecCCCCceeecCCCCcEEeCCCCEEEE
Q 005770 568 EPYLIGSESHEDFSRT-SIVIPSAQVSKMHARISYKD-GAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEF 645 (678)
Q Consensus 568 ~~~~iGR~~~~~~~~~-~~~~~~~~vSr~Ha~i~~~~-~~~~i~Dl~S~nGt~v~~~~~~~~~~~~~~~~~l~~gd~i~~ 645 (678)
..+.|||... + ++.++++.|||.||+|.++. +.|++.|+.|+||||||+. ++.++.++.|.+||+|.|
T Consensus 22 ~~~~iGr~~~-----~~~i~l~~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~~-----~~~~~~~~~l~~gd~i~i 91 (102)
T cd00060 22 GTYTIGRDSD-----NCDIVLDDPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNGQ-----RVSPGEPVRLRDGDVIRL 91 (102)
T ss_pred CeEEECcCCC-----cCCEEcCCCCeeCcceEEEEcCCCCEEEEECCCCCCeEECCE-----ECCCCCcEECCCCCEEEE
Confidence 7899999999 6 99999999999999999998 8999999999999999999 888888999999999999
Q ss_pred CCCceEEEEEE
Q 005770 646 GSDKKAIFRVK 656 (678)
Q Consensus 646 g~~~~~~~~~~ 656 (678)
|..... |+|.
T Consensus 92 g~~~~~-~~~~ 101 (102)
T cd00060 92 GNTSIS-FRFE 101 (102)
T ss_pred CCeEEE-EEEe
Confidence 973222 5553
No 65
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.29 E-value=1.4e-11 Score=130.60 Aligned_cols=78 Identities=29% Similarity=0.541 Sum_probs=70.1
Q ss_pred CCCcEEeCCCCCCCCCcceEEeCCCc--ccccceEEEEeCCEEEEEeCCCCCceEec--CCCCceeecCCCCcEEeCCCC
Q 005770 566 ENEPYLIGSESHEDFSRTSIVIPSAQ--VSKMHARISYKDGAFYLIDLQSEHGTYVT--DNEGRRYRVSSNFPARFRPSD 641 (678)
Q Consensus 566 ~~~~~~iGR~~~~~~~~~~~~~~~~~--vSr~Ha~i~~~~~~~~i~Dl~S~nGt~v~--~~~~~~~~~~~~~~~~l~~gd 641 (678)
.....+|||++. |+++++++. ||+.||+|.++++.|+|+|+ |+|||||| |. ++.++.++.|++||
T Consensus 22 ~~~~~~IGR~~~-----~d~~l~d~~~~VS~~Ha~I~~~~g~~~l~Dl-StNGT~VN~sg~-----~l~~~~~~~L~~GD 90 (396)
T TIGR03354 22 GTNGGTIGRSED-----CDWVLPDPERHVSGRHARIRYRDGAYLLTDL-STNGVFLNGSGS-----PLGRGNPVRLEQGD 90 (396)
T ss_pred CCCCEEEecCCC-----CCEEeCCCCCCcchhhcEEEEECCEEEEEEC-CCCCeEECCCCC-----CCCCCCceEcCCCC
Confidence 366799999998 999999988 99999999999999999998 99999999 77 88888899999999
Q ss_pred EEEECCCceEEEEE
Q 005770 642 TIEFGSDKKAIFRV 655 (678)
Q Consensus 642 ~i~~g~~~~~~~~~ 655 (678)
+|+||+.... +.+
T Consensus 91 ~I~iG~~~lr-v~~ 103 (396)
T TIGR03354 91 RLRLGDYEIR-VSL 103 (396)
T ss_pred EEEECCEEEE-EEe
Confidence 9999997544 444
No 66
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.27 E-value=4.1e-11 Score=120.93 Aligned_cols=137 Identities=26% Similarity=0.323 Sum_probs=90.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccc-----eeeChhHHHHHHhcChhHHHHHHHhcc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGP-----IQIQSNALAALEAIDLDVAEEVMRAGC 149 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~-----~~l~~~~~~~L~~l~~gl~~~~~~~~~ 149 (678)
...+||+||||||+|+++|+.|++.|++|+|+|+...+.. +...++ +.+.....++|+++ |+
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Gg--g~~~gg~~~~~~~v~~~~~~~l~~~--gv--------- 89 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG--GMWGGGMLFNKIVVQEEADEILDEF--GI--------- 89 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCC--ccccCccccccccchHHHHHHHHHC--CC---------
Confidence 3468999999999999999999999999999999864321 111111 11222233333333 11
Q ss_pred ccccceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCC-eEE-EEE
Q 005770 150 VTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGD-KVS-VVL 225 (678)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~-~v~-v~~ 225 (678)
. + .. . ..+ .+.+++..+...|.+.+. +..++.+++|.++..+++ .+. +..
T Consensus 90 ~----~---~~---------~-------~~g---~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~ 143 (257)
T PRK04176 90 R----Y---KE---------V-------EDG---LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVI 143 (257)
T ss_pred C----c---ee---------e-------cCc---ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEE
Confidence 0 0 00 0 001 246778888888887762 346888999999987655 332 221
Q ss_pred c-----------CCcEEeccEEEEecCCCchhhhhh
Q 005770 226 E-----------NGQCYAGDLLIGADGIWSKVRKNL 250 (678)
Q Consensus 226 ~-----------dg~~i~a~~vVgADG~~S~VR~~l 250 (678)
. +..+++|++||.|+|.+|.+.+.+
T Consensus 144 ~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 144 NWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred ccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 1 224799999999999999999988
No 67
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.20 E-value=1.6e-10 Score=116.26 Aligned_cols=136 Identities=21% Similarity=0.298 Sum_probs=88.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccce-----eeChhHHHHHHhcChhHHHHHHHhccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPI-----QIQSNALAALEAIDLDVAEEVMRAGCV 150 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~-----~l~~~~~~~L~~l~~gl~~~~~~~~~~ 150 (678)
..+||+||||||+|+++|+.|+++|++|+|+||...... +.+.++. .+.....++++.+ |+ .
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Gg--g~~~gg~~~~~~~~~~~~~~~l~~~--gi---------~ 86 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGG--GSWGGGMLFSKIVVEKPAHEILDEF--GI---------R 86 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCc--cccCCCcceecccccchHHHHHHHC--CC---------C
Confidence 468999999999999999999999999999999864321 1111111 1222222333322 11 0
Q ss_pred cccceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCe--EE-EEE
Q 005770 151 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDK--VS-VVL 225 (678)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~--v~-v~~ 225 (678)
. .. .+.. .+..++..+.+.|.+.+. ...++.++++.++..+++. +. |.+
T Consensus 87 ----~---~~------------------~~~g-~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~ 140 (254)
T TIGR00292 87 ----Y---ED------------------EGDG-YVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVI 140 (254)
T ss_pred ----e---ee------------------ccCc-eEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEe
Confidence 0 00 0001 234577788888877652 3468889999999876662 22 222
Q ss_pred c-----------CCcEEeccEEEEecCCCchhhhhh
Q 005770 226 E-----------NGQCYAGDLLIGADGIWSKVRKNL 250 (678)
Q Consensus 226 ~-----------dg~~i~a~~vVgADG~~S~VR~~l 250 (678)
. |..+++|++||.|+|..|.+.+.+
T Consensus 141 ~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 141 NWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred CCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 1 224799999999999999999887
No 68
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.18 E-value=4.4e-09 Score=121.38 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=51.3
Q ss_pred EEeCHHHHHHHHHHhcCC-ceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCCCch
Q 005770 185 RVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (678)
Q Consensus 185 ~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~~S~ 245 (678)
..++...+...|.+.+.. ..++++++|++++.++++++|.+.+|+.++|+.||.|+|++|.
T Consensus 403 G~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 403 GWLCPAELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred CeeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 457778888888887653 4578899999999888889888888878899999999999985
No 69
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.16 E-value=8.7e-11 Score=120.48 Aligned_cols=160 Identities=20% Similarity=0.181 Sum_probs=94.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCccc-ccceeeCh--hHHHHHHhcC---hhHHHHHHHhc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQY-RGPIQIQS--NALAALEAID---LDVAEEVMRAG 148 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~-~~~~~l~~--~~~~~L~~l~---~gl~~~~~~~~ 148 (678)
|+.+||+|||||||||+||..++++|.+|+|+|+.+..-+..--. .+...++. ..-+++.+.+ .-+...+.+.
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f- 79 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF- 79 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC-
Confidence 456899999999999999999999999999999987653321000 11222221 1233344432 0111111110
Q ss_pred cccccceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhc--CCceEEeCCeEEEEEEeCCeEEEEEc
Q 005770 149 CVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLE 226 (678)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~~~~~~~~v~v~~~ 226 (678)
....+..+..+. |-.+. ....|.-+...-.-..+.+.|..++ .+..++.+++|.+++.++.+..+++.
T Consensus 80 --t~~d~i~~~e~~-Gi~~~-------e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~ 149 (408)
T COG2081 80 --TPEDFIDWVEGL-GIALK-------EEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTS 149 (408)
T ss_pred --CHHHHHHHHHhc-CCeeE-------EccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcC
Confidence 000111111110 00000 0011111111123355666666665 34569999999999999989999999
Q ss_pred CCcEEeccEEEEecCCCch
Q 005770 227 NGQCYAGDLLIGADGIWSK 245 (678)
Q Consensus 227 dg~~i~a~~vVgADG~~S~ 245 (678)
+|++++||-||.|.|..|.
T Consensus 150 ~g~~i~~d~lilAtGG~S~ 168 (408)
T COG2081 150 SGETVKCDSLILATGGKSW 168 (408)
T ss_pred CCCEEEccEEEEecCCcCC
Confidence 9999999999999998885
No 70
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.15 E-value=1.3e-10 Score=112.54 Aligned_cols=80 Identities=26% Similarity=0.435 Sum_probs=68.8
Q ss_pred CCcEEeCCCCCCCCCcceEEeCCCcccccceEEEEeCCEEEEEeCCCCCceEecCCCCceeecCCCCcEEeCCCCEEEEC
Q 005770 567 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFG 646 (678)
Q Consensus 567 ~~~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~~~~~~i~Dl~S~nGt~v~~~~~~~~~~~~~~~~~l~~gd~i~~g 646 (678)
...+.|||+.+ +++++++..|||+||.|.++++.++++|++|+|||||||. ++.+ .+.+.+||.|+||
T Consensus 88 ~~~~tigr~~~-----~~i~~~~~~vSR~Ha~l~~~~~~~~~~d~~S~nGt~vn~~-----~v~~--~~~l~~gd~i~i~ 155 (191)
T COG1716 88 EPVTTIGRDPD-----NDIVLDDDVVSRRHAELRREGNEVFLEDLGSTNGTYVNGE-----KVRQ--RVLLQDGDVIRLG 155 (191)
T ss_pred cceEEeccCCC-----CCEEcCCCccccceEEEEEeCCceEEEECCCCcceEECCe-----EccC--cEEcCCCCEEEEC
Confidence 34799999777 9999999999999999999999999999999999999999 7764 5799999999999
Q ss_pred CCceEEEEEEec
Q 005770 647 SDKKAIFRVKVI 658 (678)
Q Consensus 647 ~~~~~~~~~~~~ 658 (678)
......++....
T Consensus 156 ~~~~~~~~~~~~ 167 (191)
T COG1716 156 GTLAERLRIILT 167 (191)
T ss_pred ccceeeEeeccc
Confidence 986522444433
No 71
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.11 E-value=9.5e-09 Score=110.70 Aligned_cols=59 Identities=20% Similarity=0.342 Sum_probs=45.0
Q ss_pred EeCHHHHHHHHHHhc--CCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCCCch
Q 005770 186 VISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (678)
Q Consensus 186 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~~S~ 245 (678)
.++...+...+.+.+ .+..++.+++|++++.+++++.|++++| +++||.||.|+|+.+.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 455555555555443 2345888999999998888888888777 7999999999999864
No 72
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.08 E-value=1.5e-08 Score=109.33 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=50.3
Q ss_pred EEeCHHHHHHHHHHhc--CCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCCC-chhhhhh
Q 005770 185 RVISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW-SKVRKNL 250 (678)
Q Consensus 185 ~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~~-S~VR~~l 250 (678)
..++...+.+.|.+.+ .+..++.+++|++++.+++.+.|++.++ +++||.||.|.|.+ |.+++.+
T Consensus 140 g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~ 207 (380)
T TIGR01377 140 GVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPL 207 (380)
T ss_pred cEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhc
Confidence 4667778888887765 2345788999999998888888877666 79999888888875 6677766
No 73
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.07 E-value=1.6e-10 Score=108.03 Aligned_cols=93 Identities=29% Similarity=0.432 Sum_probs=73.8
Q ss_pred ceEEEecCCCCCcCcceeeecccCCCcEEeCCCCCCCCCcceEEeCCCcccccceEEEEeC------C-------EEEEE
Q 005770 543 EWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKD------G-------AFYLI 609 (678)
Q Consensus 543 ~~~Ll~~~~~~~~~~~l~~~~~~~~~~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~~------~-------~~~i~ 609 (678)
.|-|..|.+.. ++...+..-...+++||.-.. .||.++++..|++||+|.+.. + ..||+
T Consensus 173 RwrLy~fk~~e----~l~~l~iHrqs~yL~gRerkI----aDi~idhpScSKQHaviQyR~v~~~r~dGt~grrvkpYii 244 (293)
T KOG1882|consen 173 RWRLYPFKCYE----VLPVLYIHRQSCYLDGRERKI----ADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRVKPYII 244 (293)
T ss_pred heecccccCCc----ccchheeeeeeeeecCceeee----eccCCCCccccccceeeeeeecccccCCCccceeeeeEEE
Confidence 47777776553 222222223557899997665 899999999999999998862 2 37999
Q ss_pred eCCCCCceEecCCCCceeecCCCCcEEeCCCCEEEECCC
Q 005770 610 DLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 648 (678)
Q Consensus 610 Dl~S~nGt~v~~~~~~~~~~~~~~~~~l~~gd~i~~g~~ 648 (678)
||+|+||||||.. +|.|-.++.|..+|+|.||-.
T Consensus 245 DLgS~NgTfLNnk-----~IepqRYyEL~ekDvlkfgfs 278 (293)
T KOG1882|consen 245 DLGSGNGTFLNNK-----VIEPQRYYELREKDVLKFGFS 278 (293)
T ss_pred ecCCCCcceecCc-----ccCchheeeeecCceeeeccc
Confidence 9999999999999 999999999999999999954
No 74
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.07 E-value=2.8e-09 Score=100.97 Aligned_cols=138 Identities=22% Similarity=0.283 Sum_probs=84.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccC---CcccccceeeChhHHHHHHhcChhHHHHHHHhccccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG---EGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~---~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~ 152 (678)
.++||+||||||+||++|+.|++.|++|.|+|++..+--+ .|..-..+.++..+..+|+.+ |+.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~el--gi~----------- 82 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDEL--GIP----------- 82 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHH--T-------------
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhC--Cce-----------
Confidence 4589999999999999999999999999999998654211 111111255677777888877 331
Q ss_pred cceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhc-C-CceEEeCCeEEEEEEeC-CeEE---EEEc
Q 005770 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV-G-DEIILNESNVIDFKDHG-DKVS---VVLE 226 (678)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~-~-~~~i~~~~~v~~~~~~~-~~v~---v~~~ 226 (678)
. .+ + .+..+..+-..+...|..++ . +..++-.+.|.++-..+ +.|. +...
T Consensus 83 --y---~~---------~----------~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt 138 (230)
T PF01946_consen 83 --Y---EE---------Y----------GDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWT 138 (230)
T ss_dssp ------EE--------------------SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEH
T ss_pred --e---EE---------e----------CCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEeh
Confidence 0 00 0 01135667777777776654 3 34577788888887665 5543 2221
Q ss_pred ---------CCcEEeccEEEEecCCCchhhhhh
Q 005770 227 ---------NGQCYAGDLLIGADGIWSKVRKNL 250 (678)
Q Consensus 227 ---------dg~~i~a~~vVgADG~~S~VR~~l 250 (678)
|--+++|++||.|+|..+.|-+.+
T Consensus 139 ~V~~~glHvDPl~i~ak~ViDaTGHda~v~~~~ 171 (230)
T PF01946_consen 139 PVEMAGLHVDPLTIRAKVVIDATGHDAEVVRVL 171 (230)
T ss_dssp HHHTT--T-B-EEEEESEEEE---SSSSSTSHH
T ss_pred HHhHhhcCCCcceEEEeEEEeCCCCchHHHHHH
Confidence 223899999999999988776655
No 75
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.04 E-value=6.1e-08 Score=105.70 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=43.6
Q ss_pred eCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCC-----cEEeccEEEEecCCCch
Q 005770 187 ISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENG-----QCYAGDLLIGADGIWSK 245 (678)
Q Consensus 187 i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg-----~~i~a~~vVgADG~~S~ 245 (678)
++-..+...|.+.+. ...++.+++|++++.+++.+++.+.++ .+++||.||.|.|++|.
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 344556666666552 346888999999998888887765443 37999999999999985
No 76
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.03 E-value=3.4e-10 Score=84.28 Aligned_cols=48 Identities=44% Similarity=0.771 Sum_probs=44.4
Q ss_pred EEeCCCC-CCCCCcceEEeCCCcccccceEEEEeCCE-EEEEeCCCCCceEecCC
Q 005770 570 YLIGSES-HEDFSRTSIVIPSAQVSKMHARISYKDGA-FYLIDLQSEHGTYVTDN 622 (678)
Q Consensus 570 ~~iGR~~-~~~~~~~~~~~~~~~vSr~Ha~i~~~~~~-~~i~Dl~S~nGt~v~~~ 622 (678)
++|||.+ . |+++++++.||+.||.|.++.+. |+|+|++|+|||||||.
T Consensus 1 ~~iGr~~~~-----~~i~~~~~~vs~~H~~i~~~~~~~~~i~d~~s~~gt~vng~ 50 (52)
T smart00240 1 VTIGRSSED-----CDIQLPGPSISRRHAEIVYDGGGRFYLIDLGSTNGTFVNGK 50 (52)
T ss_pred CEeCCCCCC-----CCEEeCCCCcchhHcEEEECCCCeEEEEECCCCCCeeECCE
Confidence 3799999 6 99999999999999999999765 99999999999999997
No 77
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.01 E-value=4.5e-09 Score=98.66 Aligned_cols=136 Identities=23% Similarity=0.308 Sum_probs=91.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccc-----eeeChhHHHHHHhcChhHHHHHHHhccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGP-----IQIQSNALAALEAIDLDVAEEVMRAGCV 150 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~-----~~l~~~~~~~L~~l~~gl~~~~~~~~~~ 150 (678)
...||+||||||+||++|+.||++|++|+|+||+-.+ +.|.+.++ +.+...+.++|+.+ |+.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~--GGG~w~GGmlf~~iVv~~~a~~iL~e~--gI~--------- 95 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSF--GGGIWGGGMLFNKIVVREEADEILDEF--GIR--------- 95 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeeccc--CCcccccccccceeeecchHHHHHHHh--CCc---------
Confidence 4579999999999999999999999999999998543 22223322 44666677777776 221
Q ss_pred cccceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhc-C-CceEEeCCeEEEEEEeCC-eEE---EE
Q 005770 151 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV-G-DEIILNESNVIDFKDHGD-KVS---VV 224 (678)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~-~-~~~i~~~~~v~~~~~~~~-~v~---v~ 224 (678)
. .. .+ +..+..+-..+..-|..++ . ...++-++.|.++...++ +|. +.
T Consensus 96 ----y---e~----------------~e---~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvN 149 (262)
T COG1635 96 ----Y---EE----------------EE---DGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVN 149 (262)
T ss_pred ----c---ee----------------cC---CceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEe
Confidence 0 00 00 0024556667776666654 2 235777888999876655 433 21
Q ss_pred Ec---------CCcEEeccEEEEecCCCchhhhhh
Q 005770 225 LE---------NGQCYAGDLLIGADGIWSKVRKNL 250 (678)
Q Consensus 225 ~~---------dg~~i~a~~vVgADG~~S~VR~~l 250 (678)
.. |--+++|++||.|.|..-.|-+.+
T Consensus 150 Wt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 150 WTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred cchhhhcccccCcceeeEEEEEeCCCCchHHHHHH
Confidence 11 234799999999999988877766
No 78
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.99 E-value=4.7e-09 Score=111.85 Aligned_cols=62 Identities=27% Similarity=0.350 Sum_probs=50.8
Q ss_pred EEEeCHHHHHHHHHHhc--CCceEEeCCeEEEEEEeCCeEE-EEEcCCcEEeccEEEEecCCCchh
Q 005770 184 TRVISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKV 246 (678)
Q Consensus 184 ~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~~~~~~~~v~-v~~~dg~~i~a~~vVgADG~~S~V 246 (678)
...++-..+.+.|.+.+ .+..++.+++|++++.++++|+ |.+++|+ ++||.||.|.|.+|.-
T Consensus 141 ~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 141 GGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred cccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence 56778888888888876 2356888999999999999998 9999997 9999999999998754
No 79
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.96 E-value=1.7e-09 Score=110.51 Aligned_cols=80 Identities=33% Similarity=0.432 Sum_probs=68.9
Q ss_pred CCCcEEeCCCCCCCCCcceEEeCC--CcccccceEEEEeCCEEEEEeCCCCCceEecCCCCceeecCCCCc-EEeCCCCE
Q 005770 566 ENEPYLIGSESHEDFSRTSIVIPS--AQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFP-ARFRPSDT 642 (678)
Q Consensus 566 ~~~~~~iGR~~~~~~~~~~~~~~~--~~vSr~Ha~i~~~~~~~~i~Dl~S~nGt~v~~~~~~~~~~~~~~~-~~l~~gd~ 642 (678)
+....+|||+++ |+..|+| ..||+.||.|.+++|.|+|+|. |.|||||||. .+..+.. .+|+.||+
T Consensus 24 ~~~~g~IGrs~d-----cdW~i~D~~~~VS~~Hc~I~~~dg~f~L~Dt-S~g~l~VNgs-----~~~~g~~~~RLqqGd~ 92 (430)
T COG3456 24 DRGGGVIGRSPD-----CDWQIDDPERFVSKQHCTISYRDGGFCLTDT-SNGGLLVNGS-----DLPLGEGSARLQQGDE 92 (430)
T ss_pred hcCCcccccCCC-----CCccccCcccccchhheEEEecCCeEEEEec-CCCceeeccc-----ccCCCCCccccccCCE
Confidence 355789999999 6667755 5799999999999999999997 7999999998 8888888 99999999
Q ss_pred EEECCCceEEEEEEecc
Q 005770 643 IEFGSDKKAIFRVKVIG 659 (678)
Q Consensus 643 i~~g~~~~~~~~~~~~~ 659 (678)
|.||+. +|+|....
T Consensus 93 i~iG~y---~i~V~l~~ 106 (430)
T COG3456 93 ILIGRY---IIRVHLSR 106 (430)
T ss_pred EeeccE---EEEEEecc
Confidence 999987 47777653
No 80
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.96 E-value=3e-09 Score=114.11 Aligned_cols=143 Identities=24% Similarity=0.270 Sum_probs=73.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccccccc---CCcccccceeeCh-----------------hHHHHHHhcC
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIR---GEGQYRGPIQIQS-----------------NALAALEAID 137 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~---~~g~~~~~~~l~~-----------------~~~~~L~~l~ 137 (678)
|||+||||||+||+||+.|++.|.+|+|+||++...+ ..|. +...++. .....|++++
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~--GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGN--GRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGG--GT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCC--CCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence 6999999999999999999999999999999865421 1110 0111111 1123444442
Q ss_pred h-hHHHHHHHhccccccceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEE
Q 005770 138 L-DVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDF 214 (678)
Q Consensus 138 ~-gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~ 214 (678)
. .+..-+.+.+... ..... +..+...-.-..+..+|.+.+. ...++++++|.++
T Consensus 79 ~~d~~~ff~~~Gv~~-------~~~~~----------------gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i 135 (409)
T PF03486_consen 79 PEDLIAFFEELGVPT-------KIEED----------------GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSI 135 (409)
T ss_dssp HHHHHHHHHHTT--E-------EE-ST----------------TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEE
T ss_pred HHHHHHHHHhcCCeE-------EEcCC----------------CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeee
Confidence 1 1111112222100 00000 1111111123456666666552 3468999999999
Q ss_pred EEeCCe-EEEEEcCCcEEeccEEEEecCCCch
Q 005770 215 KDHGDK-VSVVLENGQCYAGDLLIGADGIWSK 245 (678)
Q Consensus 215 ~~~~~~-v~v~~~dg~~i~a~~vVgADG~~S~ 245 (678)
+.++++ +.|.+++++++.||.||.|.|..|.
T Consensus 136 ~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 136 EKKEDGVFGVKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp EEETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred eecCCceeEeeccCcccccCCEEEEecCCCCc
Confidence 988887 7788877889999999999998874
No 81
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.94 E-value=1.7e-08 Score=111.66 Aligned_cols=150 Identities=17% Similarity=0.284 Sum_probs=87.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccC-Ccc-cccceeeChhHHHHHHhcChhHHHHHHHhccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EGQ-YRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~-~g~-~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~ 152 (678)
+..+||+||||||||+.+|+.+++.|.+|.|+|++....-. ... .-+++. .....+-++.++ ++.....+.....
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~a-kg~lvrEidalG-g~~g~~~d~~giq- 78 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIA-KGHLVREIDALG-GEMGKAIDKTGIQ- 78 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccch-hhHHHHHHHhcC-CHHHHHHhhccCc-
Confidence 45699999999999999999999999999999987422100 000 000110 011122233443 3333222221110
Q ss_pred cceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCeEE-EEEcCC
Q 005770 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVS-VVLENG 228 (678)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~v~-v~~~dg 228 (678)
.. ..+...+. .. ..+ ...+++..+...|.+.+. +..+ +..+|+++..+++.+. |.+.+|
T Consensus 79 --~r-~ln~skGp----------AV--~s~-RaQiDr~ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~grV~GV~t~dG 141 (618)
T PRK05192 79 --FR-MLNTSKGP----------AV--RAL-RAQADRKLYRAAMREILENQPNLDL-FQGEVEDLIVENGRVVGVVTQDG 141 (618)
T ss_pred --ee-ecccCCCC----------ce--eCc-HHhcCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEecCCEEEEEEECCC
Confidence 00 00100000 00 000 125788888888877663 3344 4678888887777665 778889
Q ss_pred cEEeccEEEEecCCCc
Q 005770 229 QCYAGDLLIGADGIWS 244 (678)
Q Consensus 229 ~~i~a~~vVgADG~~S 244 (678)
..+.|+.||.|+|..+
T Consensus 142 ~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 142 LEFRAKAVVLTTGTFL 157 (618)
T ss_pred CEEECCEEEEeeCcch
Confidence 9999999999999865
No 82
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.94 E-value=1.7e-08 Score=109.44 Aligned_cols=66 Identities=21% Similarity=0.310 Sum_probs=52.4
Q ss_pred EEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCCCch-hhhhh
Q 005770 184 TRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK-VRKNL 250 (678)
Q Consensus 184 ~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~~S~-VR~~l 250 (678)
...++...+.+.|.+.+. +..++++++|++++.+++++.|.+.+| ++.||.||.|+|.+|. +.+.+
T Consensus 143 ~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~ 211 (393)
T PRK11728 143 TGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMA 211 (393)
T ss_pred ceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHh
Confidence 356788888888887763 345888999999988888888887776 7999999999999984 44444
No 83
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.92 E-value=1.6e-07 Score=104.85 Aligned_cols=173 Identities=21% Similarity=0.260 Sum_probs=94.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHH-------HHH
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEE-------VMR 146 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~-------~~~ 146 (678)
++..+||+|||||++|+++|+.|+++|++|+|+|+.....-.++ +...+-..+.+.+......+..+ +.+
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~---~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~ 79 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSS---RSGKLVHGGLRYLEYYEFRLVREALIEREVLLA 79 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCch---hhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 45669999999999999999999999999999999853321111 11112222334443332222211 111
Q ss_pred hcc--ccccceeeee-e-cCCC----------------------ceeeeccC----CCcccc--cCC-CeEEEeCHHHHH
Q 005770 147 AGC--VTGDRINGLV-D-GISG----------------------SWYIKFDT----FTPAAE--KGL-PVTRVISRMTLQ 193 (678)
Q Consensus 147 ~~~--~~~~~~~~~~-~-~~~~----------------------~~~~~~~~----~~~~~~--~~~-~~~~~i~r~~l~ 193 (678)
..+ .....+. +. + .... ...+.... ...... .++ +....++...|.
T Consensus 80 ~ap~l~~~~~~~-~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~ 158 (502)
T PRK13369 80 AAPHIIWPMRFV-LPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLV 158 (502)
T ss_pred hCCccccccceE-EecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHH
Confidence 111 0000000 00 0 0000 00000000 000000 000 011346777777
Q ss_pred HHHHHhc--CCceEEeCCeEEEEEEeCCeEEEEEcCC----cEEeccEEEEecCCCch-hhhhh
Q 005770 194 QILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENG----QCYAGDLLIGADGIWSK-VRKNL 250 (678)
Q Consensus 194 ~~L~~~~--~~~~i~~~~~v~~~~~~~~~v~v~~~dg----~~i~a~~vVgADG~~S~-VR~~l 250 (678)
..|...+ .+..++.+++|+++..+++.+.+++.++ .+++|++||.|+|++|. +.+.+
T Consensus 159 ~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~ 222 (502)
T PRK13369 159 VLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRV 222 (502)
T ss_pred HHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhc
Confidence 7776654 2345888999999998887777777664 36999999999999884 44433
No 84
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.90 E-value=1.8e-07 Score=95.49 Aligned_cols=325 Identities=17% Similarity=0.153 Sum_probs=160.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHc------CCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRK------GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAG 148 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~------g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~ 148 (678)
...+||+|||||||||++|+.|.+. -++|.|+|+....-... .. +-.+.|.++. .|-+ -|. +.+
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght--lS-Gaviep~ald---EL~P-~wk---e~~ 143 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT--LS-GAVIEPGALD---ELLP-DWK---EDG 143 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce--ec-ceeeccchhh---hhCc-chh---hcC
Confidence 4569999999999999999999763 67999999986432110 00 1224454332 2210 111 111
Q ss_pred c-----ccccceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEEeCCe-
Q 005770 149 C-----VTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDK- 220 (678)
Q Consensus 149 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~~~~~~~~- 220 (678)
. +..+.+. +. .+...+..+...+....| .|+++-..|.++|-+.++. ..|.-+..+..+-.++++
T Consensus 144 apl~t~vT~d~~~-fL---t~~~~i~vPv~~pm~NhG---NYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgs 216 (621)
T KOG2415|consen 144 APLNTPVTSDKFK-FL---TGKGRISVPVPSPMDNHG---NYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGS 216 (621)
T ss_pred Cccccccccccee-ee---ccCceeecCCCcccccCC---cEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCc
Confidence 1 1122222 11 122233333322222223 4788999999999887632 234444444444433332
Q ss_pred EE----------------EEEcCCcEEeccEEEEecCCCchhhhhhc---CCCCccccccEEEEEEe---cCCCCCcCCc
Q 005770 221 VS----------------VVLENGQCYAGDLLIGADGIWSKVRKNLF---GPQEAIYSGYTCYTGIA---DFVPADIESV 278 (678)
Q Consensus 221 v~----------------v~~~dg~~i~a~~vVgADG~~S~VR~~l~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 278 (678)
|. -+|+.|-.+.|+..|-|.|.+..+-++++ ........+ ..-.++. ...+..+.+.
T Consensus 217 VkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~q-tYglGlKEvWei~~~~~~pG 295 (621)
T KOG2415|consen 217 VKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQ-TYGLGLKEVWEIDPENHNPG 295 (621)
T ss_pred EeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcc-eeccccceeEecChhhcCCc
Confidence 11 12233447899999999999998888873 221111111 1111221 1222222211
Q ss_pred ceEEEec----C---ceEEEEeeCCCCeEEEEEEEeCCCCCCCCcchhHHHHHHHhccCChhHHHHHHcCChhhhhhccc
Q 005770 279 GYRVFLG----H---KQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDI 351 (678)
Q Consensus 279 ~~~~~~~----~---~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 351 (678)
....-++ . ++.|+. ...+..+..-+....+-. ++--...++++++-. ++.+...+..........+.+
T Consensus 296 ~v~HT~GwPl~~~tYGGsFlY-h~~d~~VavGlVVgLdY~--NP~lsP~~EFQk~K~--hP~i~~vleGgk~i~YgARaL 370 (621)
T KOG2415|consen 296 EVAHTLGWPLDNDTYGGSFLY-HFNDPLVAVGLVVGLDYK--NPYLSPYKEFQKMKH--HPSISKVLEGGKRIAYGARAL 370 (621)
T ss_pred ceeeeccCcccCCccCceeEE-EcCCCeEEEEEEEEecCC--CCCCCHHHHHHHhhc--CcchhhhhcCcceeeehhhhh
Confidence 1111100 0 111221 222222211111111100 111122334433321 333444443322222222222
Q ss_pred ccC--CCCccccCCcEEEEccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhhccCCCCChhhHHHH--HHHHHHHHhHH
Q 005770 352 YDR--TPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSA--LKSYERARRLR 427 (678)
Q Consensus 352 ~~~--~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~Da~~La~~L~~~~~~~~~~~~~~~~~~~--L~~Ye~eRr~~ 427 (678)
..- ...+...-.+=+|||=+|.+++---=-|..+||.++...|+.+-+.+++... ..... +.+|++.-+..
T Consensus 371 NEGGfQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~-----~k~~~~~~~~Ye~nlkds 445 (621)
T KOG2415|consen 371 NEGGFQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQ-----SKMAGLDPTTYEENLKDS 445 (621)
T ss_pred ccCCcccCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCcc-----ccccccChhhHHHhhhhh
Confidence 211 1122344566689999999999888899999999999999999998876421 00112 45888866643
No 85
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.90 E-value=1.8e-07 Score=104.35 Aligned_cols=60 Identities=23% Similarity=0.356 Sum_probs=44.1
Q ss_pred EeCHHHHHHHHHHhc--CCceEEeCCeEEEEEEeCCeEEEEEcC---Cc--EEeccEEEEecCCCch
Q 005770 186 VISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLEN---GQ--CYAGDLLIGADGIWSK 245 (678)
Q Consensus 186 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~~~~~~~~v~v~~~d---g~--~i~a~~vVgADG~~S~ 245 (678)
.++...|...|.+.+ .+..++.+++|+++..+++.+.+++.+ |+ +++|+.||.|+|++|.
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 356566655555444 234588889999998887777777654 53 7999999999999874
No 86
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.90 E-value=6.8e-09 Score=101.44 Aligned_cols=136 Identities=21% Similarity=0.268 Sum_probs=71.4
Q ss_pred EEECCCHHHHHHHHHHHHcCCc-EEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceeeee
Q 005770 81 LVAGGGIGGLVFALAAKRKGFE-VLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLV 159 (678)
Q Consensus 81 ~ivG~G~~G~~~a~~l~~~g~~-~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~~~ 159 (678)
+||||||+||++|..|.++|++ |+|+|+++.+ | |.|.............. .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~----G---------------------g~w~~~~~~~~~~~~~~---~ 52 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRP----G---------------------GVWRRYYSYTRLHSPSF---F 52 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSS----T---------------------THHHCH-TTTT-BSSSC---C
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCC----C---------------------CeeEEeCCCCccccCcc---c
Confidence 6999999999999999999999 9999997432 1 11111000000000000 0
Q ss_pred ecCCCceeeeccCCCcccc--cCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccE
Q 005770 160 DGISGSWYIKFDTFTPAAE--KGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (678)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~ 235 (678)
....+ ...+........ ...+ .....+.++.+.|.+.+. ...++++++|++++.++++|+|+++++++++|+.
T Consensus 53 ~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~ 129 (203)
T PF13738_consen 53 SSDFG--LPDFESFSFDDSPEWRWP-HDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADR 129 (203)
T ss_dssp TGGSS----CCCHSCHHHHHHHHHS-BSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEE
T ss_pred ccccc--CCcccccccccCCCCCCC-cccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeee
Confidence 00000 000000000000 0000 112456667677666542 2238899999999999999999999998999999
Q ss_pred EEEecCCCchhh
Q 005770 236 LIGADGIWSKVR 247 (678)
Q Consensus 236 vVgADG~~S~VR 247 (678)
||.|.|..|.-+
T Consensus 130 VVlAtG~~~~p~ 141 (203)
T PF13738_consen 130 VVLATGHYSHPR 141 (203)
T ss_dssp EEE---SSCSB-
T ss_pred EEEeeeccCCCC
Confidence 999999876533
No 87
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.88 E-value=5e-07 Score=98.74 Aligned_cols=59 Identities=17% Similarity=0.068 Sum_probs=43.6
Q ss_pred EeCHHHHHHHHHHhc--CCceEEeCCeEEEEEEeCCeEE-EEEcCCcEEeccEEEEecCCCch
Q 005770 186 VISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSK 245 (678)
Q Consensus 186 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~~~~~~~~v~-v~~~dg~~i~a~~vVgADG~~S~ 245 (678)
.++-..+...|.+.+ .+..++.+++|++++.+++++. ++..+ .+++||.||.|.|.+|.
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~-~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGG-GVITADAYVVALGSYST 258 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCC-cEEeCCEEEECCCcchH
Confidence 345556667776655 2345888999999998777764 55544 47999999999999884
No 88
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.85 E-value=3e-07 Score=100.15 Aligned_cols=39 Identities=28% Similarity=0.459 Sum_probs=34.0
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHc-CC-cEEEEecccc
Q 005770 73 SENKKLRILVAGGGIGGLVFALAAKRK-GF-EVLVFEKDMS 111 (678)
Q Consensus 73 ~~~~~~~v~ivG~G~~G~~~a~~l~~~-g~-~~~~~e~~~~ 111 (678)
+....+||+|||||++|+++|+.|+++ |. +|+|+||...
T Consensus 26 ~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 26 EPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred CCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 345678999999999999999999995 96 8999999753
No 89
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.79 E-value=1e-07 Score=100.14 Aligned_cols=143 Identities=20% Similarity=0.295 Sum_probs=83.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecccccc-cCCcccccceeeCh--hHHHHHHhcChhHHHHHHHhccccccce
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI-RGEGQYRGPIQIQS--NALAALEAIDLDVAEEVMRAGCVTGDRI 155 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~-~~~g~~~~~~~l~~--~~~~~L~~l~~gl~~~~~~~~~~~~~~~ 155 (678)
||+|||||.||+.+|+.+|+.|.+|+|+....... .-... .++.-.. ...+-++.++ |..-.+.+...+ +.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cn--psigg~~kg~L~~Eidalg-g~m~~~aD~~~i---~~ 74 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCN--PSIGGIAKGHLVREIDALG-GLMGRAADETGI---HF 74 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSS--SEEESTTHHHHHHHHHHTT--SHHHHHHHHEE---EE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccch--hhhccccccchhHHHhhhh-hHHHHHHhHhhh---hh
Confidence 89999999999999999999999999994332211 11110 0111111 1223355554 333333332211 00
Q ss_pred eeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCC---ceEEeCCeEEEEEEeCCeEE-EEEcCCcEE
Q 005770 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVS-VVLENGQCY 231 (678)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~~~~~~~~v~-v~~~dg~~i 231 (678)
. ..+...| .......+.++|..+.+.+.+.+.. ..+ ...+|+++..+++.|. |.+.+|+.+
T Consensus 75 ~-~lN~skG-------------pav~a~r~qvDr~~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~~~v~GV~~~~g~~~ 139 (392)
T PF01134_consen 75 R-MLNRSKG-------------PAVHALRAQVDRDKYSRAMREKLESHPNLTI-IQGEVTDLIVENGKVKGVVTKDGEEI 139 (392)
T ss_dssp E-EESTTS--------------GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEE-EES-EEEEEECTTEEEEEEETTSEEE
T ss_pred h-cccccCC-------------CCccchHhhccHHHHHHHHHHHHhcCCCeEE-EEcccceEEecCCeEEEEEeCCCCEE
Confidence 0 0010000 1112224689999999999888743 345 4679999988777765 788899999
Q ss_pred eccEEEEecCC
Q 005770 232 AGDLLIGADGI 242 (678)
Q Consensus 232 ~a~~vVgADG~ 242 (678)
.+|.||.|+|.
T Consensus 140 ~a~~vVlaTGt 150 (392)
T PF01134_consen 140 EADAVVLATGT 150 (392)
T ss_dssp EECEEEE-TTT
T ss_pred ecCEEEEeccc
Confidence 99999999998
No 90
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.77 E-value=1.3e-07 Score=100.72 Aligned_cols=175 Identities=15% Similarity=0.219 Sum_probs=97.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEecccccccCCcc-cc----cceeeChhHHHH-HHhcChhHHHHHHH
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMSAIRGEGQ-YR----GPIQIQSNALAA-LEAIDLDVAEEVMR 146 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g--~~~~~~e~~~~~~~~~g~-~~----~~~~l~~~~~~~-L~~l~~gl~~~~~~ 146 (678)
+..+||+|||||+.|+++|..|++++ ++|+|+||.......... .. .++...+..+.+ +...+--.+.++.+
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k 80 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK 80 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999 999999998765432211 11 112223332211 11111011111111
Q ss_pred hcccccc---ceeeeeecC---------------CCce-eeecc-----CCCcccc------cCCCeEEEeCHHHHHHHH
Q 005770 147 AGCVTGD---RINGLVDGI---------------SGSW-YIKFD-----TFTPAAE------KGLPVTRVISRMTLQQIL 196 (678)
Q Consensus 147 ~~~~~~~---~~~~~~~~~---------------~~~~-~~~~~-----~~~~~~~------~~~~~~~~i~r~~l~~~L 196 (678)
....+.. .+. +..+. .+-. ...++ ...|... .-.|-+..|+-..+-..|
T Consensus 81 q~~~~f~~~g~l~-vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l 159 (429)
T COG0579 81 QLGIPFINCGKLS-VATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRAL 159 (429)
T ss_pred HhCCcccccCeEE-EEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHH
Confidence 1110000 000 00000 0000 00000 0000000 001224567777877777
Q ss_pred HHhc--CCceEEeCCeEEEEEEeCCe-EEEEEcCCcE-EeccEEEEecCCCch-hhhhh
Q 005770 197 AKAV--GDEIILNESNVIDFKDHGDK-VSVVLENGQC-YAGDLLIGADGIWSK-VRKNL 250 (678)
Q Consensus 197 ~~~~--~~~~i~~~~~v~~~~~~~~~-v~v~~~dg~~-i~a~~vVgADG~~S~-VR~~l 250 (678)
.+.+ .+..++++++|++++..+++ ..+.+.+|++ ++|++||.|-|..|- +.+.+
T Consensus 160 ~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~ 218 (429)
T COG0579 160 AEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMA 218 (429)
T ss_pred HHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHh
Confidence 7766 34469999999999999884 5677778876 999999999998875 44444
No 91
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=98.70 E-value=6.9e-09 Score=112.05 Aligned_cols=82 Identities=24% Similarity=0.466 Sum_probs=73.6
Q ss_pred CCcEEeCCCCCCCCCcceEEeCCCcccccceEEEEe--C---------CEEEEEeCCCCCceEecCCCCceeecCCCCcE
Q 005770 567 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--D---------GAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPA 635 (678)
Q Consensus 567 ~~~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~--~---------~~~~i~Dl~S~nGt~v~~~~~~~~~~~~~~~~ 635 (678)
...+++||... ||+.+.++.|||.||.+.+. + -+|+|.|+|||+|||+|.. |+.|..+.
T Consensus 176 ~~~~~fgr~~~-----cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~-----rvppk~yi 245 (793)
T KOG1881|consen 176 AAACLFGRLGG-----CDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKD-----RVPPKVYI 245 (793)
T ss_pred ceeEEecccCC-----CccccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccc-----cCCCcchh
Confidence 45799999997 99999999999999999985 2 2499999999999999999 99999999
Q ss_pred EeCCCCEEEECCCceEEEEEEecc
Q 005770 636 RFRPSDTIEFGSDKKAIFRVKVIG 659 (678)
Q Consensus 636 ~l~~gd~i~~g~~~~~~~~~~~~~ 659 (678)
.++.|++++||..+++ |.|..+.
T Consensus 246 r~~Vg~v~~fggsTrl-~i~Qgp~ 268 (793)
T KOG1881|consen 246 RDRVGHVARFGGSTRL-YIFQGPE 268 (793)
T ss_pred hhhHHHHHHhcCceEE-EEeeCCC
Confidence 9999999999999777 8777663
No 92
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.69 E-value=1.2e-07 Score=103.92 Aligned_cols=147 Identities=19% Similarity=0.221 Sum_probs=84.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcC---------hhHHHHHH
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAID---------LDVAEEVM 145 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~---------~gl~~~~~ 145 (678)
....+|+||||||+||++|..|.+.|++|+|+|+..... | .....+..-. +.++ ..+++.+.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG---G----~W~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~ 78 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG---G----LWVYTPKSES--DPLSLDPTRSIVHSSVYESLR 78 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc---c----eeecCCCcCC--CccccCCCCcccchhhhhhhh
Confidence 446789999999999999999999999999999985321 1 1111111100 0000 00111111
Q ss_pred HhccccccceeeeeecCCCceeeeccCCCcccc---cCCCeEEEeCHHHHHHHHHHhcCC----ceEEeCCeEEEEEEeC
Q 005770 146 RAGCVTGDRINGLVDGISGSWYIKFDTFTPAAE---KGLPVTRVISRMTLQQILAKAVGD----EIILNESNVIDFKDHG 218 (678)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~~~~~~ 218 (678)
... .+....|..+..... ..........+.++.+.|.+.+.. ..++++++|++++..+
T Consensus 79 tn~---------------p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~ 143 (461)
T PLN02172 79 TNL---------------PRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD 143 (461)
T ss_pred ccC---------------CHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC
Confidence 100 000111110000000 000001123567787888777632 2388999999999888
Q ss_pred CeEEEEEcCC--c--EEeccEEEEecCCCch
Q 005770 219 DKVSVVLENG--Q--CYAGDLLIGADGIWSK 245 (678)
Q Consensus 219 ~~v~v~~~dg--~--~i~a~~vVgADG~~S~ 245 (678)
+.|+|++.++ . +..+|.||.|.|..+.
T Consensus 144 ~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 144 GKWRVQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred CeEEEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 8899988653 2 4679999999998654
No 93
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.67 E-value=3.4e-08 Score=107.86 Aligned_cols=146 Identities=21% Similarity=0.265 Sum_probs=35.6
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeCh-hHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQS-NALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~-~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
|||||||||+|+++|+.+++.|.+|+|+|+....-- .....+...+.. .... ... .|+..++.+........ .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG-~~t~~~~~~~~~~~~~~--~~~-~gi~~e~~~~~~~~~~~-~- 74 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGG-MATSGGVSPFDGNHDED--QVI-GGIFREFLNRLRARGGY-P- 74 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTG-GGGGSSS-EETTEEHHH--HHH-HHHHHHHHHST---------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCC-cceECCcCChhhcchhh--ccC-CCHHHHHHHHHhhhccc-c-
Confidence 899999999999999999999999999998864210 000000111111 1111 111 15555555432110000 0
Q ss_pred eeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhc--CCceEEeCCeEEEEEEeCCeEE-EEEcC--C-cEE
Q 005770 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVS-VVLEN--G-QCY 231 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~~~~~~~~v~-v~~~d--g-~~i 231 (678)
.. . ..+....+.+++..++.+|.+.+ .+..+++++.|+++..+++.++ |++.+ | .++
T Consensus 75 -~~-~---------------~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i 137 (428)
T PF12831_consen 75 -QE-D---------------RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEI 137 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cc-c---------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 0 00000002334444444444444 2345889999999998875543 44443 4 589
Q ss_pred eccEEEEecCCCchhh
Q 005770 232 AGDLLIGADGIWSKVR 247 (678)
Q Consensus 232 ~a~~vVgADG~~S~VR 247 (678)
+|+++|+|+|-....+
T Consensus 138 ~A~~~IDaTG~g~l~~ 153 (428)
T PF12831_consen 138 RAKVFIDATGDGDLAA 153 (428)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 9999999999644333
No 94
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.66 E-value=1.7e-07 Score=90.96 Aligned_cols=143 Identities=23% Similarity=0.286 Sum_probs=81.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccc------c-CCcccc-cceeeChhHHHHHHhcChhHHHHHHHhcc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI------R-GEGQYR-GPIQIQSNALAALEAIDLDVAEEVMRAGC 149 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~------~-~~g~~~-~~~~l~~~~~~~L~~l~~gl~~~~~~~~~ 149 (678)
.+|+|||+||+|+++|..|+..|++|+|+||..... + ..|.++ ++-.+.++.-.+++.+ +.+.+.+.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~V-----e~~~~~gl 76 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAV-----EALRDDGL 76 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHH-----HHHHhCCc
Confidence 369999999999999999999999999999974321 1 111111 2234555554444433 23333332
Q ss_pred ccc--cceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcC
Q 005770 150 VTG--DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLEN 227 (678)
Q Consensus 150 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~d 227 (678)
+.. ..++.+.... .+......|+...-.-..|-+.|..-+ .+.++++|+.+...++.|+++.++
T Consensus 77 V~~W~~~~~~~~~~~-----------~~~~~d~~pyvg~pgmsalak~LAtdL---~V~~~~rVt~v~~~~~~W~l~~~~ 142 (331)
T COG3380 77 VDVWTPAVWTFTGDG-----------SPPRGDEDPYVGEPGMSALAKFLATDL---TVVLETRVTEVARTDNDWTLHTDD 142 (331)
T ss_pred eeeccccccccccCC-----------CCCCCCCCccccCcchHHHHHHHhccc---hhhhhhhhhhheecCCeeEEEecC
Confidence 210 1111111110 000001111111112345555555433 467899999999999999999987
Q ss_pred Cc-EEeccEEEEe
Q 005770 228 GQ-CYAGDLLIGA 239 (678)
Q Consensus 228 g~-~i~a~~vVgA 239 (678)
|. ...+|.||.|
T Consensus 143 g~~~~~~d~vvla 155 (331)
T COG3380 143 GTRHTQFDDVVLA 155 (331)
T ss_pred CCcccccceEEEe
Confidence 64 5677777765
No 95
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.66 E-value=5.5e-07 Score=99.62 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=50.2
Q ss_pred eEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCe-EEEEEc---CCc--EEeccEEEEecCCCc-hhhhhhc
Q 005770 183 VTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDK-VSVVLE---NGQ--CYAGDLLIGADGIWS-KVRKNLF 251 (678)
Q Consensus 183 ~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~-v~v~~~---dg~--~i~a~~vVgADG~~S-~VR~~l~ 251 (678)
....++...+.+.|.+.+. ...++++++|++++.++++ |.+++. +|+ +++|++||.|.|.+| .+++.++
T Consensus 176 ~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~G 254 (494)
T PRK05257 176 IGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSG 254 (494)
T ss_pred CceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcC
Confidence 3467889999999988763 2368899999999986554 766653 353 699999887777665 5666553
No 96
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.64 E-value=8.7e-07 Score=98.02 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=45.8
Q ss_pred EEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCCCch
Q 005770 185 RVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (678)
Q Consensus 185 ~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~~S~ 245 (678)
..++-..+...|.+.+. ...++.+++|++++. ++.+.|++.+| +++||.||.|.|++|.
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 46788888888877652 346888999999975 45566777666 6999999999998864
No 97
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.60 E-value=5.7e-07 Score=98.80 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=51.1
Q ss_pred EEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEe-CCeEEEEE---cCCc--EEeccEEEEecCCCch-hhhhhc
Q 005770 184 TRVISRMTLQQILAKAVG---DEIILNESNVIDFKDH-GDKVSVVL---ENGQ--CYAGDLLIGADGIWSK-VRKNLF 251 (678)
Q Consensus 184 ~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~-~~~v~v~~---~dg~--~i~a~~vVgADG~~S~-VR~~l~ 251 (678)
...|+...|.+.|.+.+. +..++++++|++++.+ +++|++++ .+++ +++||+||.|-|++|. +.+.++
T Consensus 178 ~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~G 255 (497)
T PRK13339 178 GTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSG 255 (497)
T ss_pred ceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcC
Confidence 467899999988887762 3568899999999877 66787764 3443 6899999888888773 555553
No 98
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.59 E-value=5.6e-07 Score=96.52 Aligned_cols=56 Identities=13% Similarity=0.004 Sum_probs=41.9
Q ss_pred EEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCCCch
Q 005770 185 RVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (678)
Q Consensus 185 ~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~~S~ 245 (678)
..++-..+...|.+.+. ...++.+++|++++.. .|++.+| +++||.||.|.|++|.
T Consensus 140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCChh
Confidence 46777778777877642 4467889999999643 4666666 4789999999999874
No 99
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.59 E-value=3.9e-07 Score=98.62 Aligned_cols=152 Identities=22% Similarity=0.225 Sum_probs=79.6
Q ss_pred EEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccc-eeeCh-h-HHHHHHhcCh--h-HHHHHHHhccccccc
Q 005770 81 LVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGP-IQIQS-N-ALAALEAIDL--D-VAEEVMRAGCVTGDR 154 (678)
Q Consensus 81 ~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~-~~l~~-~-~~~~L~~l~~--g-l~~~~~~~~~~~~~~ 154 (678)
+|||||++|+++|+.|+++|.+|+|+|+.+..........++ ..+.. . ..+.++..+. . +...+..... ..
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~---~d 77 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSN---KD 77 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCH---HH
Confidence 699999999999999999999999999986542211100111 11111 1 1111122210 0 1000100000 00
Q ss_pred eeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCCcEEe
Q 005770 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (678)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~ 232 (678)
...+... .+-..... ..+..+...-....+.+.|.+.+. ...++++++|++++.+++.+.+++ +++++.
T Consensus 78 ~~~~~~~-~Gv~~~~~-------~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ 148 (400)
T TIGR00275 78 LIDFFES-LGLELKVE-------EDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYE 148 (400)
T ss_pred HHHHHHH-cCCeeEEe-------cCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEE
Confidence 0000000 00000000 001000011123455666666552 346888999999988777777777 566899
Q ss_pred ccEEEEecCCCc
Q 005770 233 GDLLIGADGIWS 244 (678)
Q Consensus 233 a~~vVgADG~~S 244 (678)
+|.||.|+|..|
T Consensus 149 ad~VIlAtG~~s 160 (400)
T TIGR00275 149 ADKVILATGGLS 160 (400)
T ss_pred cCEEEECCCCcc
Confidence 999999999988
No 100
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.57 E-value=3.6e-07 Score=94.97 Aligned_cols=110 Identities=21% Similarity=0.319 Sum_probs=71.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
+||+||||||+|+++|..|++.|++|+|+|+... .| .+.... .+.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~----gg----~~~~~~--------------------------~~~- 45 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP----GG----QLTTTT--------------------------EVE- 45 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC----Cc----ceeecc--------------------------ccc-
Confidence 5899999999999999999999999999998741 11 110000 000
Q ss_pred eeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhc--CCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccE
Q 005770 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~ 235 (678)
.++. .+ ..+....+...|.+.+ ....+++ .+|++++.+++.+++++.+++++++|+
T Consensus 46 -----------~~~~--------~~--~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~ 103 (300)
T TIGR01292 46 -----------NYPG--------FP--EGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKA 103 (300)
T ss_pred -----------ccCC--------CC--CCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCE
Confidence 0000 00 0011122333333322 1234666 789999988888888888888999999
Q ss_pred EEEecCCCc
Q 005770 236 LIGADGIWS 244 (678)
Q Consensus 236 vVgADG~~S 244 (678)
||.|.|...
T Consensus 104 liiAtG~~~ 112 (300)
T TIGR01292 104 VIIATGASA 112 (300)
T ss_pred EEECCCCCc
Confidence 999999864
No 101
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.56 E-value=6.1e-06 Score=94.19 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=46.3
Q ss_pred EEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeC--CeEE-EEE---cCCc--EEeccEEEEecCCCch-hhhhh
Q 005770 185 RVISRMTLQQILAKAVG--DEIILNESNVIDFKDHG--DKVS-VVL---ENGQ--CYAGDLLIGADGIWSK-VRKNL 250 (678)
Q Consensus 185 ~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~--~~v~-v~~---~dg~--~i~a~~vVgADG~~S~-VR~~l 250 (678)
..++-..|...|.+.+. +..++.+++|+++..++ +.+. |++ .+++ +++|+.||.|.|++|. +++.+
T Consensus 227 g~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~ 303 (627)
T PLN02464 227 GQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMA 303 (627)
T ss_pred cEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhc
Confidence 34677788887877663 34578889999998763 4332 343 2343 6899999999999985 66654
No 102
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.55 E-value=3.6e-06 Score=91.04 Aligned_cols=63 Identities=25% Similarity=0.331 Sum_probs=46.5
Q ss_pred EEeCHHHHHHHHHHhc---CCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCCCchhhh
Q 005770 185 RVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRK 248 (678)
Q Consensus 185 ~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~~S~VR~ 248 (678)
..++-..+.+.|.+.+ +...+..++.+..++.+...+.|.+.+|+ +.|+.||.|.|+++..--
T Consensus 151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~ 216 (387)
T COG0665 151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELA 216 (387)
T ss_pred CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHH
Confidence 4566667777777765 22456778899988874355777777777 999999999999977543
No 103
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.55 E-value=5.2e-07 Score=101.13 Aligned_cols=112 Identities=23% Similarity=0.314 Sum_probs=76.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~ 154 (678)
...+||+||||||+|+++|..|++.|++|+|+++. .| +.... .. ++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~------~G----G~~~~--------~~--~~-------------- 254 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER------FG----GQVLD--------TM--GI-------------- 254 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC------CC----Ceeec--------cC--cc--------------
Confidence 44689999999999999999999999999999753 11 10000 00 00
Q ss_pred eeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCCcEEe
Q 005770 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (678)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~ 232 (678)
. + ...+. ......+.+.|.+.+. +..++.+++|+++...++.+.+++.+|++++
T Consensus 255 -~---~------~~~~~--------------~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~ 310 (517)
T PRK15317 255 -E---N------FISVP--------------ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLK 310 (517)
T ss_pred -c---c------cCCCC--------------CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEE
Confidence 0 0 00000 0112344444444432 2457789999999988788889888888999
Q ss_pred ccEEEEecCCCc
Q 005770 233 GDLLIGADGIWS 244 (678)
Q Consensus 233 a~~vVgADG~~S 244 (678)
++.||.|+|+++
T Consensus 311 a~~vViAtG~~~ 322 (517)
T PRK15317 311 AKTVILATGARW 322 (517)
T ss_pred cCEEEECCCCCc
Confidence 999999999965
No 104
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.54 E-value=7.4e-07 Score=97.36 Aligned_cols=136 Identities=21% Similarity=0.237 Sum_probs=77.9
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCc-EEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccc
Q 005770 73 SENKKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVT 151 (678)
Q Consensus 73 ~~~~~~~v~ivG~G~~G~~~a~~l~~~g~~-~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~ 151 (678)
+.+..+||+|||||++|+++|..|.++|+. ++|+||+... | |.|..- ..+
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~----G---------------------g~W~~~----ry~ 54 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV----G---------------------GTWRYN----RYP 54 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCc----C---------------------Ccchhc----cCC
Confidence 345678999999999999999999999999 9999998532 1 111100 000
Q ss_pred ccceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEE--EEeCCeEEEEEcCCc
Q 005770 152 GDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDF--KDHGDKVSVVLENGQ 229 (678)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~--~~~~~~v~v~~~dg~ 229 (678)
... .+ +..+...|+..........+. ..-.+..+...+.+......+.+++.|..+ +++++.|+|++++|.
T Consensus 55 ~l~----~~--~p~~~~~~~~~p~~~~~~~~~-~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~ 127 (443)
T COG2072 55 GLR----LD--SPKWLLGFPFLPFRWDEAFAP-FAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGG 127 (443)
T ss_pred ceE----EC--CchheeccCCCccCCcccCCC-cccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCC
Confidence 000 00 011111121111100111111 111244555555554433346666665554 455568999999886
Q ss_pred E--EeccEEEEecCCCc
Q 005770 230 C--YAGDLLIGADGIWS 244 (678)
Q Consensus 230 ~--i~a~~vVgADG~~S 244 (678)
+ +.||.||.|.|..|
T Consensus 128 ~~~~~a~~vV~ATG~~~ 144 (443)
T COG2072 128 TGELTADFVVVATGHLS 144 (443)
T ss_pred eeeEecCEEEEeecCCC
Confidence 5 56999999999844
No 105
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.54 E-value=3e-07 Score=99.15 Aligned_cols=140 Identities=19% Similarity=0.177 Sum_probs=86.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~ 154 (678)
+...+|+||||||+||++|..|.+.|++|+++||..... | -....+..-.... -+.+.+.-.-+
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG---G----lW~y~~~~~~~~s----s~Y~~l~tn~p----- 67 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG---G----LWKYTENVEVVHS----SVYKSLRTNLP----- 67 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc---c----eEeecCccccccc----chhhhhhccCC-----
Confidence 456799999999999999999999999999999985431 1 0111111100000 01111111000
Q ss_pred eeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCC----ceEEeCCeEEEEEEeC-CeEEEEEcCC-
Q 005770 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD----EIILNESNVIDFKDHG-DKVSVVLENG- 228 (678)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~~~~~~-~~v~v~~~dg- 228 (678)
+....+..+..... .+ .+..++.++.+.|...+.. ..+.++++|..++... +.|.|...++
T Consensus 68 ----------Ke~~~~~dfpf~~~--~~-~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~ 134 (448)
T KOG1399|consen 68 ----------KEMMGYSDFPFPER--DP-RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNG 134 (448)
T ss_pred ----------hhhhcCCCCCCccc--Cc-ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCC
Confidence 00011111100000 11 2345677888899887743 2489999999999888 6899998764
Q ss_pred ---cEEeccEEEEecCCC
Q 005770 229 ---QCYAGDLLIGADGIW 243 (678)
Q Consensus 229 ---~~i~a~~vVgADG~~ 243 (678)
+..-+|.||.|.|-+
T Consensus 135 ~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 135 TQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred cceeEEEeeEEEEcccCc
Confidence 366799999999998
No 106
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.53 E-value=9e-07 Score=97.80 Aligned_cols=68 Identities=12% Similarity=0.035 Sum_probs=49.0
Q ss_pred EEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeC-CeEEEEEc---CC--cEEeccEEEEecCC-Cchhhhhhc
Q 005770 184 TRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHG-DKVSVVLE---NG--QCYAGDLLIGADGI-WSKVRKNLF 251 (678)
Q Consensus 184 ~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~-~~v~v~~~---dg--~~i~a~~vVgADG~-~S~VR~~l~ 251 (678)
...|+...+...|.+.+. +..++++++|++++.++ ++|.+++. +| .+++|++||.|-|. .+.+++.++
T Consensus 172 ~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~G 248 (483)
T TIGR01320 172 GTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSG 248 (483)
T ss_pred CEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcC
Confidence 457888999999888763 34688999999998865 45766543 34 26899999666555 456777663
No 107
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.52 E-value=9.2e-07 Score=99.60 Aligned_cols=64 Identities=22% Similarity=0.363 Sum_probs=45.6
Q ss_pred EEeCHHHHHHHHHHhc--CCceEEeCCeEEEEEEeCCeEE-EEEc---CC--cEEeccEEEEecCCCch-hhh
Q 005770 185 RVISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVS-VVLE---NG--QCYAGDLLIGADGIWSK-VRK 248 (678)
Q Consensus 185 ~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~~~~~~~~v~-v~~~---dg--~~i~a~~vVgADG~~S~-VR~ 248 (678)
..++...|...|...+ .+..++.+++|+++..+++++. |++. ++ .+++|+.||-|.|.+|. +.+
T Consensus 144 g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~ 216 (546)
T PRK11101 144 GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAE 216 (546)
T ss_pred cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHH
Confidence 3577777777776654 2345888999999988776643 4442 23 37999999999999874 444
No 108
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.51 E-value=1.7e-06 Score=95.45 Aligned_cols=65 Identities=9% Similarity=0.119 Sum_probs=49.7
Q ss_pred EEeCHHHHHHHHHHhcCC--------ceEEeCCeEEEEEEe-CCeEEEEEcCCcEEeccEEEEecCCCch-hhhhh
Q 005770 185 RVISRMTLQQILAKAVGD--------EIILNESNVIDFKDH-GDKVSVVLENGQCYAGDLLIGADGIWSK-VRKNL 250 (678)
Q Consensus 185 ~~i~r~~l~~~L~~~~~~--------~~i~~~~~v~~~~~~-~~~v~v~~~dg~~i~a~~vVgADG~~S~-VR~~l 250 (678)
..++-..|...|.+.+.. ..++++++|++++.+ ++.+.|++.+| +++|++||.|-|++|. +.+.+
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~ 280 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKM 280 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHh
Confidence 467777887777766532 347889999999987 55677887777 6999999999999985 44544
No 109
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.51 E-value=1.4e-05 Score=88.57 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=37.7
Q ss_pred HhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCCC
Q 005770 198 KAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW 243 (678)
Q Consensus 198 ~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~~ 243 (678)
+.++...++++++|+.|+.++++|+|++++|+++.||.||.|--..
T Consensus 233 ~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 233 KRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred HHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 3333234888999999999999999998888899999999987764
No 110
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.51 E-value=3.8e-06 Score=94.52 Aligned_cols=37 Identities=41% Similarity=0.592 Sum_probs=34.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...+||+|||+|.|||++|+.+++.|.+|+|+||...
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 3468999999999999999999999999999999764
No 111
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.50 E-value=5.6e-07 Score=100.14 Aligned_cols=133 Identities=23% Similarity=0.263 Sum_probs=80.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHH-----hccccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMR-----AGCVTG 152 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~-----~~~~~~ 152 (678)
.+|+|||||++||++|..|...|++++++||++.. | |+|..-.. ......
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i----G---------------------G~W~~~~~~~~g~~~~y~s 56 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI----G---------------------GLWRYTENPEDGRSSVYDS 56 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS----S---------------------GGGCHSTTCCCSEGGGSTT
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC----C---------------------ccCeeCCcCCCCccccccc
Confidence 57999999999999999999999999999998532 2 22210000 000000
Q ss_pred cceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCC----ceEEeCCeEEEEEEeC-----CeEEE
Q 005770 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD----EIILNESNVIDFKDHG-----DKVSV 223 (678)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~~~~~~-----~~v~v 223 (678)
... ........|..+.. ....| ...++.++.+.|...+.. ..++++++|++++..+ +.|+|
T Consensus 57 l~~------n~sk~~~~fsdfp~--p~~~p--~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V 126 (531)
T PF00743_consen 57 LHT------NTSKEMMAFSDFPF--PEDYP--DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEV 126 (531)
T ss_dssp -B-------SS-GGGSCCTTS-H--CCCCS--SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEE
T ss_pred eEE------eeCchHhcCCCcCC--CCCCC--CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEE
Confidence 000 01111222222211 11222 245789999999887732 2589999999998765 36888
Q ss_pred EEcC-Cc--EEeccEEEEecCCCch
Q 005770 224 VLEN-GQ--CYAGDLLIGADGIWSK 245 (678)
Q Consensus 224 ~~~d-g~--~i~a~~vVgADG~~S~ 245 (678)
+.++ |+ +-.+|.||.|.|.++.
T Consensus 127 ~~~~~g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 127 TTENDGKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp EETTTTEEEEEEECEEEEEE-SSSC
T ss_pred EeecCCeEEEEEeCeEEEcCCCcCC
Confidence 8865 43 4568999999999874
No 112
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.48 E-value=3.6e-06 Score=93.35 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecC
Q 005770 192 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADG 241 (678)
Q Consensus 192 l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG 241 (678)
|-+.|.+.+....++++++|++|+.+++++.|++.+|+++.||.||.|--
T Consensus 228 l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 228 IIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence 44444554443348899999999999999999888888899999998874
No 113
>PLN02661 Putative thiazole synthesis
Probab=98.47 E-value=3.1e-06 Score=87.76 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=33.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHc-CCcEEEEecccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMS 111 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~-g~~~~~~e~~~~ 111 (678)
...++||+|||||++|+++|+.|++. |++|+|+|+...
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~ 127 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS 127 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 34568999999999999999999986 999999999754
No 114
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.47 E-value=4.8e-06 Score=92.70 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcC---CceEEeCCeEEEEEEeCCeEE-EEEcC-C--cEEeccEEEEecCCCchhhh
Q 005770 190 MTLQQILAKAVG---DEIILNESNVIDFKDHGDKVS-VVLEN-G--QCYAGDLLIGADGIWSKVRK 248 (678)
Q Consensus 190 ~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~v~-v~~~d-g--~~i~a~~vVgADG~~S~VR~ 248 (678)
..+.+.|.+.+. +..++++++++++..+++.+. +...+ + ..++++.||.|+|..|.+..
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~~ 193 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKLYQ 193 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCCCC
Confidence 467777777653 356889999999987666554 43333 3 37899999999999998655
No 115
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.46 E-value=2.5e-05 Score=86.28 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=40.1
Q ss_pred HHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCCCc
Q 005770 194 QILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 244 (678)
Q Consensus 194 ~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~~S 244 (678)
+.|.+.+....|+++++|++|+.++++++|++.+|+++.||.||.|--.+.
T Consensus 225 ~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~ 275 (451)
T PRK11883 225 EALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPV 275 (451)
T ss_pred HHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHH
Confidence 334444433258999999999999889999999999999999999976543
No 116
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.45 E-value=1.2e-06 Score=98.21 Aligned_cols=112 Identities=20% Similarity=0.297 Sum_probs=74.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~ 154 (678)
...+||+||||||+|+++|+.|++.|++|+|+|.. .|. .. .. .. ++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~------~GG---~~-~~--------~~--~~-------------- 255 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER------IGG---QV-KD--------TV--GI-------------- 255 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC------CCC---cc-cc--------Cc--Cc--------------
Confidence 45699999999999999999999999999999743 110 00 00 00 00
Q ss_pred eeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhc--CCceEEeCCeEEEEEEeCCeEEEEEcCCcEEe
Q 005770 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (678)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~ 232 (678)
..+. + .. ......+.+.|.+.+ .+..++.+++|++++.+++.+.+++.+|+.+.
T Consensus 256 -~~~~----~-----~~--------------~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~ 311 (515)
T TIGR03140 256 -ENLI----S-----VP--------------YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLK 311 (515)
T ss_pred -cccc----c-----cC--------------CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEE
Confidence 0000 0 00 001223333333333 13457788999999887778888888888999
Q ss_pred ccEEEEecCCCc
Q 005770 233 GDLLIGADGIWS 244 (678)
Q Consensus 233 a~~vVgADG~~S 244 (678)
+|.||.|+|++.
T Consensus 312 ~d~lIlAtGa~~ 323 (515)
T TIGR03140 312 AKSVIVATGARW 323 (515)
T ss_pred eCEEEECCCCCc
Confidence 999999999863
No 117
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.43 E-value=6.9e-06 Score=91.78 Aligned_cols=37 Identities=30% Similarity=0.485 Sum_probs=34.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..++||||||+|.+|+++|+.+++.|.+|+|+||.+.
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~ 95 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV 95 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 3478999999999999999999999999999999764
No 118
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=98.43 E-value=1.6e-07 Score=91.22 Aligned_cols=85 Identities=27% Similarity=0.551 Sum_probs=74.7
Q ss_pred ccCCCcEEeCCCCCCCCCcceEEeCCCcccccceEEEEe--CCEEEEEeCCCCCceEecCCCCceeecCCCCcEEeCCCC
Q 005770 564 SHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSD 641 (678)
Q Consensus 564 ~~~~~~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~--~~~~~i~Dl~S~nGt~v~~~~~~~~~~~~~~~~~l~~gd 641 (678)
..++..+++||..+. ||.++++..+||.||.+.+. ...++|.|++|++|||+-.. ||.+..+++++.|.
T Consensus 34 iddkr~y~Fgrn~q~----~df~idh~scSrvhaa~vyhkhl~~~~lidl~s~hgtf~g~~-----rL~~~~p~~l~i~~ 104 (337)
T KOG1880|consen 34 IDDKRRYLFGRNHQT----CDFVIDHASCSRVHAALVYHKHLSRIFLIDLGSTHGTFLGNE-----RLEPHKPVQLEIGS 104 (337)
T ss_pred hhhhhhhhhccCCCc----cceEeecchhhhhHhhhhhhhccceEEEEEccCCcceeeeee-----eeccCCCccccCCc
Confidence 345778999999987 99999999999999999876 56699999999999999888 99999999999999
Q ss_pred EEEECCCceEEEEEEec
Q 005770 642 TIEFGSDKKAIFRVKVI 658 (678)
Q Consensus 642 ~i~~g~~~~~~~~~~~~ 658 (678)
.+.||..+.. |.+...
T Consensus 105 ~~~fgasTr~-y~lr~k 120 (337)
T KOG1880|consen 105 TFHFGASTRI-YLLREK 120 (337)
T ss_pred eEEEecccee-eeeecc
Confidence 9999997655 665544
No 119
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.43 E-value=3.3e-06 Score=95.69 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=42.2
Q ss_pred HHHHHHHHHhc---CCceEEeCCeEEEEEEeCCeEE----EEEcCCc--EEeccEEEEecCCCchhh
Q 005770 190 MTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS----VVLENGQ--CYAGDLLIGADGIWSKVR 247 (678)
Q Consensus 190 ~~l~~~L~~~~---~~~~i~~~~~v~~~~~~~~~v~----v~~~dg~--~i~a~~vVgADG~~S~VR 247 (678)
..|...|.+.+ .+..++.++.++++..+++.+. +...+|+ .++|+.||.|+|..|.+-
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 34666666654 2346788999999987766554 2345664 789999999999999764
No 120
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.42 E-value=3.3e-06 Score=93.64 Aligned_cols=147 Identities=19% Similarity=0.299 Sum_probs=83.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCc-cc-ccceeeChhHHHHHHhcChhHHHHHHHhccccccce
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEG-QY-RGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g-~~-~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~ 155 (678)
+||+|||||++|+.+|..+++.|.+|+|+|+........+ .+ -+++ -.....+-++.++ |....+.+...... ++
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~-a~g~l~rEidaLG-G~~~~~~d~~~i~~-r~ 77 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGP-AKGILVKEIDALG-GLMGKAADKAGLQF-RV 77 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCcccccccc-ccchhhhhhhccc-chHHHHHHhhceeh-ee
Confidence 6999999999999999999999999999998743210000 00 0011 0001122334443 33222222211100 00
Q ss_pred eeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEe-CCe-EEEEEcCCcE
Q 005770 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDH-GDK-VSVVLENGQC 230 (678)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~-~~~-v~v~~~dg~~ 230 (678)
.+...+. .. ..+ ...+++..+...|.+.+. +..++ ..+++++..+ ++. +.|.+.+|..
T Consensus 78 ---ln~skgp----------AV--~~~-RaQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~ 140 (617)
T TIGR00136 78 ---LNSSKGP----------AV--RAT-RAQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLK 140 (617)
T ss_pred ---cccCCCC----------cc--ccc-HHhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCE
Confidence 0000000 00 001 136788888888877663 33444 5578887654 333 4577888889
Q ss_pred EeccEEEEecCCCc
Q 005770 231 YAGDLLIGADGIWS 244 (678)
Q Consensus 231 i~a~~vVgADG~~S 244 (678)
+.|+.||.|.|..+
T Consensus 141 I~Ad~VILATGtfL 154 (617)
T TIGR00136 141 FRAKAVIITTGTFL 154 (617)
T ss_pred EECCEEEEccCccc
Confidence 99999999999996
No 121
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.41 E-value=1.5e-06 Score=92.35 Aligned_cols=114 Identities=15% Similarity=0.225 Sum_probs=69.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccC---Ccccc-cceeeChhHHHHHHhcChhHHH-HHHHhccccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG---EGQYR-GPIQIQSNALAALEAIDLDVAE-EVMRAGCVTG 152 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~---~g~~~-~~~~l~~~~~~~L~~l~~gl~~-~~~~~~~~~~ 152 (678)
.||+|||||++|+.+|+.|+++|++|+|+|+++..... ..... ....++..+...+... |++. ++...+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~--Gll~~em~~lgsl-- 78 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAV--GLLKEEMRRLGSL-- 78 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcC--CchHHHHHHhcch--
Confidence 58999999999999999999999999999987654211 11010 1223445555666666 6664 33322210
Q ss_pred cceeeeeecCCCceeeeccCCCcccccCCCe--EEEeCHHHHHHHHHHhcCC---ceEEeCCeEEEEE
Q 005770 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPV--TRVISRMTLQQILAKAVGD---EIILNESNVIDFK 215 (678)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~~~ 215 (678)
.+ .. ....+.|. ...++|..|.+.|.+.+.. ..++ ..+|+++.
T Consensus 79 -~~---~a---------------ad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 79 -IM---EA---------------ADAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred -he---ec---------------ccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 00 00 00111111 2478999999999988743 3455 56787774
No 122
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3.1e-06 Score=87.28 Aligned_cols=114 Identities=25% Similarity=0.398 Sum_probs=71.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCc-EEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~-~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~ 153 (678)
++.+||+|||||||||++|+.++|+|++ ++|+|+...- |. + ....
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~g----g~-----------------~--~~~~----------- 46 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG----GQ-----------------L--TKTT----------- 46 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcC----Cc-----------------c--ccce-----------
Confidence 3568999999999999999999999999 6666654210 10 0 0000
Q ss_pred ceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCCcEE
Q 005770 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (678)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i 231 (678)
.+. . ++ +.+ ..+.=..|.+.+.+.+. ...+.. .+|.+++..++.+.|++++++ +
T Consensus 47 ~ve----n--------yp--------g~~--~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~ 102 (305)
T COG0492 47 DVE----N--------YP--------GFP--GGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-Y 102 (305)
T ss_pred eec----C--------CC--------CCc--cCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-E
Confidence 000 0 00 000 01222455555555542 222333 667777766657888888887 9
Q ss_pred eccEEEEecCCCchh
Q 005770 232 AGDLLIGADGIWSKV 246 (678)
Q Consensus 232 ~a~~vVgADG~~S~V 246 (678)
+|+.||.|.|+...-
T Consensus 103 ~ak~vIiAtG~~~~~ 117 (305)
T COG0492 103 EAKAVIIATGAGARK 117 (305)
T ss_pred EEeEEEECcCCcccC
Confidence 999999999987643
No 123
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.39 E-value=3.7e-06 Score=93.29 Aligned_cols=37 Identities=38% Similarity=0.534 Sum_probs=34.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
+..+||+|||+|++|+++|+.++++|.+|+|+||.+.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3568999999999999999999999999999999853
No 124
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.39 E-value=8.5e-06 Score=92.22 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=41.5
Q ss_pred HHHHHHHHHhc---CCceEEeCCeEEEEEEeCCeEE----EEEcCCc--EEeccEEEEecCCCchh
Q 005770 190 MTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS----VVLENGQ--CYAGDLLIGADGIWSKV 246 (678)
Q Consensus 190 ~~l~~~L~~~~---~~~~i~~~~~v~~~~~~~~~v~----v~~~dg~--~i~a~~vVgADG~~S~V 246 (678)
..|.+.|.+.+ .+..++.++.++++..+++.|. +...+|+ .+.|+.||.|+|..|.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 45666776654 2346788999999987766554 2334664 68999999999999865
No 125
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.38 E-value=4.7e-06 Score=91.77 Aligned_cols=33 Identities=39% Similarity=0.612 Sum_probs=31.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcC-CcEEEEecccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMS 111 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g-~~~~~~e~~~~ 111 (678)
||||||||++|+++|+.++++| .+|+|+||.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCC
Confidence 7999999999999999999999 99999999764
No 126
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.37 E-value=8.3e-06 Score=92.67 Aligned_cols=33 Identities=27% Similarity=0.536 Sum_probs=31.3
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
||+|||+|++|+++|+.+++.|.+|+|+||...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 799999999999999999999999999999753
No 127
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.32 E-value=3.8e-05 Score=83.79 Aligned_cols=173 Identities=21% Similarity=0.284 Sum_probs=97.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChh-HHHHHHHhccc---
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLD-VAEEVMRAGCV--- 150 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g-l~~~~~~~~~~--- 150 (678)
+..+||+|||||+.|+-+|+-++.+|++|+|+|++....-.+ .+...+-+.+++.|+...+. +.+.+.+....
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTS---srstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~ 86 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTS---SRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRI 86 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCccc---CccccCccchhhhhhhcchHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999986443222 22334666677777776555 33333222110
Q ss_pred -----ccccee-eeee----------------cCCC-------ceeeecc---CCCccc-c---c-CCC-eEEEeCHHHH
Q 005770 151 -----TGDRIN-GLVD----------------GISG-------SWYIKFD---TFTPAA-E---K-GLP-VTRVISRMTL 192 (678)
Q Consensus 151 -----~~~~~~-~~~~----------------~~~~-------~~~~~~~---~~~~~~-~---~-~~~-~~~~i~r~~l 192 (678)
...... -+.+ ...+ ...+... ...|.. . . +.. ...+++-..|
T Consensus 87 APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRL 166 (532)
T COG0578 87 APHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARL 166 (532)
T ss_pred CccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHH
Confidence 011100 0000 0000 0000000 000000 0 0 000 0134555555
Q ss_pred HHHHHHhc--CCceEEeCCeEEEEEEeCCeEEEEEcC---Cc--EEeccEEEEecCCCch-hhhhh
Q 005770 193 QQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLEN---GQ--CYAGDLLIGADGIWSK-VRKNL 250 (678)
Q Consensus 193 ~~~L~~~~--~~~~i~~~~~v~~~~~~~~~v~v~~~d---g~--~i~a~~vVgADG~~S~-VR~~l 250 (678)
.-.+...+ .+..++..++|+++..+++.+-|...| |+ +++|+.||-|.|.++- +++..
T Consensus 167 v~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~ 232 (532)
T COG0578 167 VAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA 232 (532)
T ss_pred HHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh
Confidence 44443333 233577789999999888844566654 33 6899999999999985 45544
No 128
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.31 E-value=1.3e-05 Score=91.03 Aligned_cols=37 Identities=30% Similarity=0.476 Sum_probs=33.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC---CcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKG---FEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g---~~~~~~e~~~~ 111 (678)
...+||+|||+|+|||++|+.+++.| .+|+|+||...
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~ 42 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP 42 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence 34589999999999999999999998 89999999764
No 129
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.27 E-value=1.3e-05 Score=65.31 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=30.8
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
+|+|||||++|+.+|..|++.|.+|+|+++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 489999999999999999999999999998753
No 130
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.26 E-value=1.8e-05 Score=87.52 Aligned_cols=33 Identities=30% Similarity=0.738 Sum_probs=31.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
+||+|||||+|||++|+.+++.|.+|+|+||..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 699999999999999999999999999999974
No 131
>PLN02568 polyamine oxidase
Probab=98.25 E-value=1.6e-05 Score=88.88 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCC
Q 005770 191 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI 242 (678)
Q Consensus 191 ~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~ 242 (678)
.|.+.|.+.+....|+++++|+.|+.++++|+|++.+|++++||.||.+=-.
T Consensus 243 ~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 243 SVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence 4777888877655689999999999999999999999999999999987654
No 132
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.25 E-value=2.2e-05 Score=85.87 Aligned_cols=35 Identities=29% Similarity=0.490 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..+||+|||+|.|||++|+.++ .|.+|+|+||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~ 37 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKL 37 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCC
Confidence 4689999999999999999975 7999999999754
No 133
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.25 E-value=9.8e-06 Score=91.60 Aligned_cols=34 Identities=32% Similarity=0.604 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
..+||+||||||||+++|+.|+++|++|+|+|+.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~ 36 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD 36 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence 3589999999999999999999999999999985
No 134
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.24 E-value=2e-06 Score=97.59 Aligned_cols=36 Identities=31% Similarity=0.495 Sum_probs=32.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc--CCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~--g~~~~~~e~~~~ 111 (678)
..+||+|||||+|||++|+.+++. |.+|+|+||...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 468999999999999999999987 489999999753
No 135
>PRK07121 hypothetical protein; Validated
Probab=98.23 E-value=3.4e-05 Score=86.11 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=34.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...+||||||+|.+|+++|+.+++.|.+|+|+||...
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~ 54 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG 54 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3478999999999999999999999999999999754
No 136
>PRK09897 hypothetical protein; Provisional
Probab=98.20 E-value=9.2e-06 Score=90.18 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=34.4
Q ss_pred eEEeCCeEEEEEEeCCeEEEEEcC-CcEEeccEEEEecCCC
Q 005770 204 IILNESNVIDFKDHGDKVSVVLEN-GQCYAGDLLIGADGIW 243 (678)
Q Consensus 204 ~i~~~~~v~~~~~~~~~v~v~~~d-g~~i~a~~vVgADG~~ 243 (678)
.++.+++|++++.+++++.+++.+ |..+.+|.||.|+|..
T Consensus 125 ~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 125 AVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHV 165 (534)
T ss_pred EEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCC
Confidence 466788999999999999998866 4689999999999963
No 137
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.19 E-value=2.1e-05 Score=73.21 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=43.5
Q ss_pred EeCHHHHHHHHHHhc-------CC--ceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCC
Q 005770 186 VISRMTLQQILAKAV-------GD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI 242 (678)
Q Consensus 186 ~i~r~~l~~~L~~~~-------~~--~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~ 242 (678)
.++|..+-+.|.+.+ .. ...+...+|++++..++++.+++.+|..+.+|.||.|.|.
T Consensus 90 f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 90 FPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 456766666655432 22 2334467999999999999999999999999999999995
No 138
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.18 E-value=3.3e-05 Score=77.59 Aligned_cols=168 Identities=21% Similarity=0.234 Sum_probs=89.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHH------HHHhcChhHHHHHHHh
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALA------ALEAIDLDVAEEVMRA 147 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~------~L~~l~~gl~~~~~~~ 147 (678)
+.+..||+|||||+-|+++|+.|+++|.++.++|+.+.+.....+.+..-.+.+.-.+ .++.+ ..|.++...
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~--e~W~~~~~~ 81 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAY--EKWRNLPEE 81 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHH--HHHHhChhh
Confidence 3456899999999999999999999999999999987664322211111112211111 01111 111111110
Q ss_pred -ccccccceeeeeecC------------------------CCceeeeccCC--CcccccCC--CeEEEeCHHHHHHHHHH
Q 005770 148 -GCVTGDRINGLVDGI------------------------SGSWYIKFDTF--TPAAEKGL--PVTRVISRMTLQQILAK 198 (678)
Q Consensus 148 -~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~--~~~~~~~~--~~~~~i~r~~l~~~L~~ 198 (678)
+.........+..+. +.+..-.|+.. .+....|. +.+.++.-..-.+.|..
T Consensus 82 ~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~ 161 (399)
T KOG2820|consen 82 SGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQD 161 (399)
T ss_pred hceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHH
Confidence 000000000000000 00000011100 00111111 22446666666666666
Q ss_pred hcCC--ceEEeCCeEEEEE---EeCCeEEEEEcCCcEEeccEEEEecCCC
Q 005770 199 AVGD--EIILNESNVIDFK---DHGDKVSVVLENGQCYAGDLLIGADGIW 243 (678)
Q Consensus 199 ~~~~--~~i~~~~~v~~~~---~~~~~v~v~~~dg~~i~a~~vVgADG~~ 243 (678)
.+.. ..++.+.+|+.++ +++..+.|.+.+|..+.|+-+|-+-|++
T Consensus 162 ~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 162 KARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred HHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence 5522 3478888888776 3456788889999999999999999985
No 139
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.17 E-value=3.5e-05 Score=88.29 Aligned_cols=36 Identities=31% Similarity=0.479 Sum_probs=33.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..+||+|||+|.|||++|+.+++.|.+|+|+|+...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~ 69 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDS 69 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 468999999999999999999999999999998543
No 140
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.17 E-value=3.1e-05 Score=86.57 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..+||+|||+|.|||++|+.+++ |.+|+|+||.+.
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~ 36 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK 36 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence 36799999999999999999976 999999999864
No 141
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.16 E-value=2.4e-05 Score=85.54 Aligned_cols=57 Identities=26% Similarity=0.274 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhc--CCceEEeCCeEEEEEEeCCeEE-EEE---cCCc--EEeccEEEEecCCCch
Q 005770 189 RMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVS-VVL---ENGQ--CYAGDLLIGADGIWSK 245 (678)
Q Consensus 189 r~~l~~~L~~~~--~~~~i~~~~~v~~~~~~~~~v~-v~~---~dg~--~i~a~~vVgADG~~S~ 245 (678)
-..+...|.+.+ ....++++++++++..+++.|+ +.. .+|+ +++|+-||.|.|..+.
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 355666676665 2356899999999999887764 333 3554 6889999999999985
No 142
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.14 E-value=2.9e-06 Score=66.64 Aligned_cols=30 Identities=40% Similarity=0.668 Sum_probs=27.5
Q ss_pred EECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 82 VAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 82 ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
|||||++||++|..|+++|++|+|+|+++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999999854
No 143
>PRK14694 putative mercuric reductase; Provisional
Probab=98.13 E-value=4.4e-05 Score=84.66 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=34.1
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 73 ~~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
+....+||+||||||+|+++|+.|++.|.+|+|||+.
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~ 38 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG 38 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 3456799999999999999999999999999999986
No 144
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.11 E-value=4.6e-05 Score=86.92 Aligned_cols=36 Identities=36% Similarity=0.493 Sum_probs=33.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc--CCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~--g~~~~~~e~~~~ 111 (678)
..+||+|||||+|||++|+.+++. |.+|+|+||...
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 358999999999999999999998 999999999764
No 145
>PRK10262 thioredoxin reductase; Provisional
Probab=98.10 E-value=1.8e-05 Score=83.33 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=32.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
+...+||+||||||+|+++|..|+++|++++++|+.
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 356789999999999999999999999999999954
No 146
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.09 E-value=2.2e-05 Score=82.68 Aligned_cols=37 Identities=27% Similarity=0.550 Sum_probs=34.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
++..||+|||+|.+||++|..|.+.|++|+|+|.+..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r 41 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDR 41 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCC
Confidence 5678999999999999999999999999999997653
No 147
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.08 E-value=0.00012 Score=83.72 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=33.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..+||+|||+|.|||++|+.+++.|.+|+|+||...
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~ 63 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP 63 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence 468999999999999999999999999999999754
No 148
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.08 E-value=1.8e-05 Score=87.71 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=33.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
+.++||+||||||+|+.+|..|+++|.+|+|+|+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 346999999999999999999999999999999863
No 149
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.07 E-value=2e-05 Score=86.71 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=32.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
+.+||+||||||+|+++|+.|+++|++|+|+|+.+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 46899999999999999999999999999999864
No 150
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.07 E-value=0.00013 Score=83.12 Aligned_cols=36 Identities=28% Similarity=0.527 Sum_probs=33.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
...+||+|||+|.|||++|+.+++.|.+|+|+||..
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 346899999999999999999999999999999974
No 151
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.07 E-value=7.4e-05 Score=84.62 Aligned_cols=36 Identities=33% Similarity=0.533 Sum_probs=33.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..+||+|||+|.|||++|+.+++.|.+|+|+||...
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~ 39 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP 39 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 458999999999999999999999999999999753
No 152
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.05 E-value=2.9e-05 Score=86.23 Aligned_cols=34 Identities=35% Similarity=0.640 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
..+||+||||||+|+++|+.|+++|.+|+|+|+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4699999999999999999999999999999985
No 153
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.04 E-value=0.0001 Score=84.25 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..+||||||+|.|||++|+.+++.|.+|+|+||...
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~ 84 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 84 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence 358999999999999999999999999999999754
No 154
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.03 E-value=0.00013 Score=82.94 Aligned_cols=37 Identities=30% Similarity=0.482 Sum_probs=33.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
|.++||||||+|+|||++|+.+++.|.+|+|+||.+.
T Consensus 1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~ 37 (589)
T PRK08641 1 MAKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPV 37 (589)
T ss_pred CCCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 3567999999999999999999999999999998754
No 155
>PLN02507 glutathione reductase
Probab=98.03 E-value=3.7e-05 Score=85.68 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=32.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
..++||+||||||+|+.+|..++++|.+|+|+|+.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~ 57 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 57 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 45689999999999999999999999999999973
No 156
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.01 E-value=5.2e-05 Score=81.61 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=37.0
Q ss_pred HHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEe
Q 005770 192 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGA 239 (678)
Q Consensus 192 l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgA 239 (678)
|-+.|.+.+... ++++++|+.+..+..++.+.+.+|+.+.||-||-+
T Consensus 217 l~~al~~~l~~~-i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t 263 (444)
T COG1232 217 LIEALAEKLEAK-IRTGTEVTKIDKKGAGKTIVDVGGEKITADGVIST 263 (444)
T ss_pred HHHHHHHHhhhc-eeecceeeEEEEcCCccEEEEcCCceEEcceEEEc
Confidence 344445555444 88999999999998888899999999999988865
No 157
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.01 E-value=0.00014 Score=83.25 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=33.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..+||+|||+|.||+++|+.+++.|.+|+|+||...
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 458999999999999999999999999999999753
No 158
>PLN02529 lysine-specific histone demethylase 1
Probab=98.00 E-value=4.2e-06 Score=95.71 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=53.1
Q ss_pred cccccccccccccccccccccCCCcccccccccccCCCCCCCCCCCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 30 SCIEFSRYDHCINYKFRTGTSGQSKNPTQMKAAVAESPTNNSDSENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
...++++||++ |.......+...|. +|+.... +.++.....+|+|||||++|+++|..|+++|++|+|+|++
T Consensus 121 ~~~~i~~ci~~--c~~~l~~~~~inc~--vnp~~~~----~~~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~ 192 (738)
T PLN02529 121 VSSEYEHLISA--AYDFLLYNGYINFG--VSPSFAS----PIPEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGR 192 (738)
T ss_pred chhhHHHHHHH--HHHHHHhCCCccee--ecccccC----CCCcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Confidence 45678999883 33223333445666 7765443 1223345689999999999999999999999999999986
Q ss_pred c
Q 005770 110 M 110 (678)
Q Consensus 110 ~ 110 (678)
.
T Consensus 193 ~ 193 (738)
T PLN02529 193 N 193 (738)
T ss_pred c
Confidence 5
No 159
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.99 E-value=4e-05 Score=82.15 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=31.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
.+|+|||||++|+.+|+.|+++|++|+|+|+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 4799999999999999999999999999998754
No 160
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.98 E-value=0.00016 Score=82.36 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..+||||||||.|||++|+.+++.|.+|+|+||...
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~ 46 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP 46 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 458999999999999999999999999999999753
No 161
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.98 E-value=8.1e-05 Score=82.71 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~ 108 (678)
..+||+||||||+|+++|+.+++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 468999999999999999999999999999998
No 162
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.97 E-value=0.00014 Score=82.04 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..+||+|||+|.||+++|+.+ +.|.+|+|+||.+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 458999999999999999999 89999999999753
No 163
>PRK08275 putative oxidoreductase; Provisional
Probab=97.95 E-value=0.00021 Score=80.85 Aligned_cols=36 Identities=39% Similarity=0.581 Sum_probs=32.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc--CCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~--g~~~~~~e~~~~ 111 (678)
..+||+|||||.||+++|+.+++. |.+|+|+||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 458999999999999999999987 789999999864
No 164
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.95 E-value=0.00014 Score=82.28 Aligned_cols=37 Identities=32% Similarity=0.565 Sum_probs=34.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..++||+|||+|++|+++|+.++++|.+|+||||.+.
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~ 41 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPH 41 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4468999999999999999999999999999999754
No 165
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.93 E-value=3.3e-05 Score=85.68 Aligned_cols=34 Identities=35% Similarity=0.572 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
..+||+||||||+|+++|+.|+++|.+|+|+|+.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4589999999999999999999999999999985
No 166
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.91 E-value=0.00031 Score=79.80 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=33.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..+||+|||+|.|||++|+.+++.|.+|+|+||...
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~ 41 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 358999999999999999999999999999999743
No 167
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.91 E-value=0.00029 Score=80.18 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..+||+|||||.|||++|+.+++. .+|+|+||...
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~ 38 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYP 38 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCC
Confidence 468999999999999999999986 99999999753
No 168
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.90 E-value=0.00016 Score=82.14 Aligned_cols=37 Identities=38% Similarity=0.658 Sum_probs=34.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..++||+|||+|++|+++|+.++++|.+|+|+||...
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~ 43 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV 43 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 3468999999999999999999999999999999764
No 169
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.89 E-value=0.00016 Score=81.35 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=32.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...+||+|||+|.|||++|+.+++. .+|+|+||...
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~ 41 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPL 41 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCC
Confidence 3458999999999999999999986 89999999754
No 170
>PLN02815 L-aspartate oxidase
Probab=97.88 E-value=0.00027 Score=80.15 Aligned_cols=36 Identities=39% Similarity=0.613 Sum_probs=32.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...+||+|||+|.|||++|+.+++.| +|+|+||...
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~ 62 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEP 62 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCC
Confidence 45689999999999999999999999 9999999764
No 171
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.87 E-value=1.3e-05 Score=89.11 Aligned_cols=37 Identities=32% Similarity=0.488 Sum_probs=34.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
|+.+||+|||||+.||++|+.|+++|++|+|+||+..
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~ 37 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDR 37 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCC
Confidence 3568999999999999999999999999999998754
No 172
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.83 E-value=0.00026 Score=81.36 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=33.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...+||||||||.|||.+|+.+++.|.+|+|+|+.+.
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~ 39 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA 39 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 3468999999999999999999999999999998754
No 173
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.82 E-value=0.00043 Score=78.76 Aligned_cols=37 Identities=38% Similarity=0.574 Sum_probs=34.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
....+||+|||+|++|+++|+.++++|.+|+|||+.+
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~ 45 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDP 45 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3457899999999999999999999999999999975
No 174
>PRK13748 putative mercuric reductase; Provisional
Probab=97.80 E-value=0.00027 Score=80.45 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
.++||+||||||+|+++|+.|++.|.+|+|||+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4699999999999999999999999999999986
No 175
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.80 E-value=0.00043 Score=78.37 Aligned_cols=35 Identities=29% Similarity=0.517 Sum_probs=33.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
.++||+|||+|.+||++|+.+++.|.+|+|+||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 56899999999999999999999999999999986
No 176
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.77 E-value=0.00022 Score=77.32 Aligned_cols=35 Identities=29% Similarity=0.605 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC--cEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~--~~~~~e~~~ 110 (678)
...+|+|||||+||+.+|..|+++|. +|+|+++.+
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~ 38 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER 38 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 44689999999999999999999987 799999874
No 177
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.76 E-value=0.00027 Score=76.09 Aligned_cols=100 Identities=24% Similarity=0.364 Sum_probs=72.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||+.|+.+|..|+++|.+|+++++.+.... + .++..+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------~------~~~~~~---------------- 185 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------S------LMPPEV---------------- 185 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------h------hCCHHH----------------
Confidence 35799999999999999999999999999998632100 0 000000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~v 236 (678)
...+.+.|.+ .+..+++++++++++.+++.+.+++.+|+++.+|+|
T Consensus 186 --------------------------------~~~l~~~l~~--~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~v 231 (377)
T PRK04965 186 --------------------------------SSRLQHRLTE--MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAV 231 (377)
T ss_pred --------------------------------HHHHHHHHHh--CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEE
Confidence 0123333332 134477789999998877788888999999999999
Q ss_pred EEecCCCch
Q 005770 237 IGADGIWSK 245 (678)
Q Consensus 237 VgADG~~S~ 245 (678)
|.|.|..+.
T Consensus 232 I~a~G~~p~ 240 (377)
T PRK04965 232 IAAAGLRPN 240 (377)
T ss_pred EECcCCCcc
Confidence 999998653
No 178
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.72 E-value=0.00043 Score=76.77 Aligned_cols=100 Identities=20% Similarity=0.244 Sum_probs=72.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.... .++..+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------------~~d~~~---------------- 218 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS--------------------FLDDEI---------------- 218 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC--------------------cCCHHH----------------
Confidence 46899999999999999999999999999998632110 000000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~v 236 (678)
...+.+.|.+ .+..++.++++++++.+++++.+++.+|+++.+|.|
T Consensus 219 --------------------------------~~~l~~~l~~--~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~v 264 (461)
T PRK05249 219 --------------------------------SDALSYHLRD--SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCL 264 (461)
T ss_pred --------------------------------HHHHHHHHHH--cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEE
Confidence 0122233322 234577899999998777788888888889999999
Q ss_pred EEecCCCchh
Q 005770 237 IGADGIWSKV 246 (678)
Q Consensus 237 VgADG~~S~V 246 (678)
|.|.|.....
T Consensus 265 i~a~G~~p~~ 274 (461)
T PRK05249 265 LYANGRTGNT 274 (461)
T ss_pred EEeecCCccc
Confidence 9999987654
No 179
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.72 E-value=0.00044 Score=77.94 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=31.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...+||+|||+|.||+++|+.++ .|.+|+|+||.+.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~ 42 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTL 42 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCC
Confidence 34689999999999999999996 5999999999754
No 180
>PLN02546 glutathione reductase
Probab=97.71 E-value=0.00017 Score=81.07 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=32.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~ 108 (678)
..+|||+||||||+|..+|+.++++|.+|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 4568999999999999999999999999999996
No 181
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.68 E-value=0.00047 Score=77.97 Aligned_cols=36 Identities=39% Similarity=0.604 Sum_probs=33.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
.++||+|||+|.+|+++|+.+++.|.+|+|+|+...
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~ 40 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDK 40 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 368999999999999999999999999999999753
No 182
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.67 E-value=0.00071 Score=75.76 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=30.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..++||+|||+|.|||++|+.++ |.+|+|+||.+.
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 34689999999999999999997 679999999864
No 183
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.67 E-value=0.00051 Score=72.90 Aligned_cols=76 Identities=16% Similarity=0.119 Sum_probs=53.1
Q ss_pred EEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCCe-EEEEEcC---C--cEEeccEEEEecCCCch-hhhhhcCC
Q 005770 184 TRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDK-VSVVLEN---G--QCYAGDLLIGADGIWSK-VRKNLFGP 253 (678)
Q Consensus 184 ~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~~-v~v~~~d---g--~~i~a~~vVgADG~~S~-VR~~l~~~ 253 (678)
+.-|+-..|-+.|.+.+. +..++++++|+++++.+++ |.|++.| | .+++|++|+..-|.+|- +-+..+..
T Consensus 175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~ 254 (488)
T PF06039_consen 175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIP 254 (488)
T ss_pred CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCCh
Confidence 345777788888877763 3469999999999998777 9888753 3 48999999877777764 33433333
Q ss_pred CCcccc
Q 005770 254 QEAIYS 259 (678)
Q Consensus 254 ~~~~~~ 259 (678)
....|.
T Consensus 255 e~~gyg 260 (488)
T PF06039_consen 255 EGKGYG 260 (488)
T ss_pred hhcccC
Confidence 333333
No 184
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.66 E-value=4.3e-05 Score=84.07 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=33.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
+++||+||||||+|+++|+.|+++|++|+|+|+..
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 46999999999999999999999999999999874
No 185
>PRK14727 putative mercuric reductase; Provisional
Probab=97.66 E-value=0.0001 Score=82.02 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=32.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
.++||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~ 48 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGA 48 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4689999999999999999999999999999986
No 186
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.65 E-value=0.00036 Score=76.59 Aligned_cols=60 Identities=15% Similarity=0.016 Sum_probs=41.1
Q ss_pred HHHHHHHHhcC--CceEEeCCeEEEEEEe--CCeEE-EEEc-CCcEEeccEEEEecCCCchhhhhh
Q 005770 191 TLQQILAKAVG--DEIILNESNVIDFKDH--GDKVS-VVLE-NGQCYAGDLLIGADGIWSKVRKNL 250 (678)
Q Consensus 191 ~l~~~L~~~~~--~~~i~~~~~v~~~~~~--~~~v~-v~~~-dg~~i~a~~vVgADG~~S~VR~~l 250 (678)
.+.+.|.+.+. ...++++++|+++..+ ++.+. +... ++.++.|+.||.|.|..+.-++.+
T Consensus 124 ~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 124 ALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHH
Confidence 45566655542 3468899999999876 33343 3333 335899999999999987766544
No 187
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.65 E-value=0.00046 Score=76.50 Aligned_cols=33 Identities=45% Similarity=0.673 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
.||+||||||+|+.+|..++++|.+|+|+|+..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 479999999999999999999999999999863
No 188
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.65 E-value=0.00053 Score=78.14 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=29.8
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 80 v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
|+|||+|+|||++|+.+++.|.+|+|+||..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 7999999999999999999999999999976
No 189
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.64 E-value=0.00045 Score=73.52 Aligned_cols=168 Identities=17% Similarity=0.198 Sum_probs=83.2
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCccccccee--eCh-h--HHHHHHhc--ChhHH-----HHHHH
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQ--IQS-N--ALAALEAI--DLDVA-----EEVMR 146 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~--l~~-~--~~~~L~~l--~~gl~-----~~~~~ 146 (678)
||+|||+|.|||++|+.|++. ++|+|+-|.+.....+--..+++. +.. . ...+.+-| |.|+- +.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 999999987644211100112232 221 1 11111111 11111 11111
Q ss_pred hccccccce--ee-eeec-CCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcC---CceEEeCCeEEEEEEeCC
Q 005770 147 AGCVTGDRI--NG-LVDG-ISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGD 219 (678)
Q Consensus 147 ~~~~~~~~~--~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~~~~~~~ 219 (678)
.+......+ .+ -++. ..+......+..+.....-+. .- -.=..+...|.+++. +..++.++.+.++..+++
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~-~~-~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~ 165 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHA-AD-ATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDG 165 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEe-cC-CccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCC
Confidence 111000000 00 0111 112122221111100000000 00 112456677777663 456777888888887777
Q ss_pred -eE---EEEEcCC--cEEeccEEEEecCCCchhhhh
Q 005770 220 -KV---SVVLENG--QCYAGDLLIGADGIWSKVRKN 249 (678)
Q Consensus 220 -~v---~v~~~dg--~~i~a~~vVgADG~~S~VR~~ 249 (678)
.+ .+...++ .++.++.||-|.|.-+.+=+.
T Consensus 166 ~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~ 201 (518)
T COG0029 166 IGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAY 201 (518)
T ss_pred ceEeEEEEecCCCeEEEEecCeEEEecCCCcccccc
Confidence 33 3333333 478999999999998766544
No 190
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.64 E-value=0.0005 Score=78.51 Aligned_cols=33 Identities=30% Similarity=0.646 Sum_probs=31.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
+|||+||||||+|..+|+.++++|.+|+|||+.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 689999999999999999999999999999974
No 191
>PRK06370 mercuric reductase; Validated
Probab=97.64 E-value=5.2e-05 Score=84.07 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=33.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
++.++||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 37 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG 37 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 456799999999999999999999999999999986
No 192
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.63 E-value=0.0013 Score=74.75 Aligned_cols=36 Identities=31% Similarity=0.513 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
.++||+|||+|++|+++|+.++++|.+|+|+|+...
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~ 50 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEY 50 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 468999999999999999999999999999998753
No 193
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.62 E-value=5.4e-05 Score=83.95 Aligned_cols=37 Identities=27% Similarity=0.298 Sum_probs=34.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
++..+||+||||||+|+++|+.|+++|.+|+|+|+..
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~ 38 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR 38 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 4567999999999999999999999999999999863
No 194
>PRK06116 glutathione reductase; Validated
Probab=97.62 E-value=5.6e-05 Score=83.51 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
..+||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4689999999999999999999999999999985
No 195
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.61 E-value=0.0006 Score=73.97 Aligned_cols=99 Identities=24% Similarity=0.324 Sum_probs=69.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+..... .++..+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------~~~~~~---------------- 188 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR-------------------NAPPPV---------------- 188 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh-------------------hcCHHH----------------
Confidence 357999999999999999999999999999986321100 000000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~v 236 (678)
...+.+.|.+ .+..++.++++++++. ++.+.+++.+|+++.+|+|
T Consensus 189 --------------------------------~~~l~~~l~~--~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~V 233 (396)
T PRK09754 189 --------------------------------QRYLLQRHQQ--AGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVV 233 (396)
T ss_pred --------------------------------HHHHHHHHHH--CCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEE
Confidence 0112222222 2344778889988876 5567788889999999999
Q ss_pred EEecCCCch
Q 005770 237 IGADGIWSK 245 (678)
Q Consensus 237 VgADG~~S~ 245 (678)
|.|.|....
T Consensus 234 v~a~G~~pn 242 (396)
T PRK09754 234 IYGIGISAN 242 (396)
T ss_pred EECCCCChh
Confidence 999998644
No 196
>PRK07208 hypothetical protein; Provisional
Probab=97.61 E-value=6e-05 Score=84.01 Aligned_cols=37 Identities=30% Similarity=0.514 Sum_probs=34.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
|+..||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~ 38 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPV 38 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 5667999999999999999999999999999998753
No 197
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.61 E-value=0.00044 Score=76.82 Aligned_cols=33 Identities=33% Similarity=0.539 Sum_probs=31.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
++||+||||||+|+.+|+.+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 198
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.60 E-value=0.00067 Score=73.80 Aligned_cols=36 Identities=33% Similarity=0.496 Sum_probs=33.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
+..|||+||||||+|..+|..+++.|.+|.|+|+..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 467999999999999999999999999999999984
No 199
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.60 E-value=0.00012 Score=78.33 Aligned_cols=144 Identities=17% Similarity=0.250 Sum_probs=82.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccc------cCCcccccceeeChhHHHHHHhcChhHHHHHHHhcc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI------RGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGC 149 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~------~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~ 149 (678)
..+||+|||||-||+.+|++.||.|.++.|+--+.... +..|....++ ..+-++.|| |+.....+...
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~-----lvrEIDALG-G~Mg~~~D~~~ 76 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGH-----LVREIDALG-GLMGKAADKAG 76 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccce-----eEEeehhcc-chHHHhhhhcC
Confidence 45999999999999999999999999999997654321 1111111111 112345555 55554444432
Q ss_pred ccccceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCC---ceEEeCCeEEEEEEeCCe--EEEE
Q 005770 150 VTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDK--VSVV 224 (678)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~~~~~~~~--v~v~ 224 (678)
..... .+...|..+.. .-..+++....+.+.+.+.+ ..+ +...|+++..+++. +-|.
T Consensus 77 IQ~r~----LN~sKGPAVra-------------~RaQaDk~~Y~~~mk~~le~~~NL~l-~q~~v~dli~e~~~~v~GV~ 138 (621)
T COG0445 77 IQFRM----LNSSKGPAVRA-------------PRAQADKWLYRRAMKNELENQPNLHL-LQGEVEDLIVEEGQRVVGVV 138 (621)
T ss_pred Cchhh----ccCCCcchhcc-------------hhhhhhHHHHHHHHHHHHhcCCCcee-hHhhhHHHhhcCCCeEEEEE
Confidence 22111 11111110000 01233444444455544432 233 45677787765443 4578
Q ss_pred EcCCcEEeccEEEEecCCC
Q 005770 225 LENGQCYAGDLLIGADGIW 243 (678)
Q Consensus 225 ~~dg~~i~a~~vVgADG~~ 243 (678)
+.+|..+.|+.||.+.|..
T Consensus 139 t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 139 TADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred eCCCCeeecCEEEEeeccc
Confidence 8899999999999999964
No 200
>PRK07846 mycothione reductase; Reviewed
Probab=97.60 E-value=0.00079 Score=74.23 Aligned_cols=98 Identities=21% Similarity=0.319 Sum_probs=70.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+.... .++..+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~--------------------~~d~~~---------------- 209 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR--------------------HLDDDI---------------- 209 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc--------------------ccCHHH----------------
Confidence 46899999999999999999999999999998632110 000000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~v 236 (678)
+..+.+.+ + ....++.++++++++.+++++.+++.+|+++.+|.|
T Consensus 210 --------------------------------~~~l~~l~-~--~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~v 254 (451)
T PRK07846 210 --------------------------------SERFTELA-S--KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVL 254 (451)
T ss_pred --------------------------------HHHHHHHH-h--cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEE
Confidence 01122221 1 123477889999998777778888888889999999
Q ss_pred EEecCCCch
Q 005770 237 IGADGIWSK 245 (678)
Q Consensus 237 VgADG~~S~ 245 (678)
|.|.|....
T Consensus 255 l~a~G~~pn 263 (451)
T PRK07846 255 LVATGRVPN 263 (451)
T ss_pred EEEECCccC
Confidence 999997654
No 201
>PRK12839 hypothetical protein; Provisional
Probab=97.59 E-value=0.0011 Score=75.18 Aligned_cols=38 Identities=39% Similarity=0.551 Sum_probs=34.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
....+||+|||+|.+|+++|+.+++.|.+|+|+|+...
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~ 42 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAST 42 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 34578999999999999999999999999999999753
No 202
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.59 E-value=7e-05 Score=82.46 Aligned_cols=39 Identities=36% Similarity=0.564 Sum_probs=35.2
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 73 ~~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..++..+|+|||||++||+||..|...|++|+|+|.+..
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdR 49 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDR 49 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCC
Confidence 455678999999999999999999999999999998753
No 203
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.58 E-value=0.001 Score=81.54 Aligned_cols=38 Identities=32% Similarity=0.565 Sum_probs=34.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
.+..+||||||+|.||+++|+..++.|.+|+|+||.+.
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~ 443 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK 443 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 45679999999999999999999999999999999753
No 204
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.56 E-value=6.8e-05 Score=82.65 Aligned_cols=34 Identities=38% Similarity=0.574 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
+++||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 3589999999999999999999999999999985
No 205
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.56 E-value=0.0018 Score=73.22 Aligned_cols=37 Identities=38% Similarity=0.611 Sum_probs=33.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...++||+|||+| +|+++|+..++.|.+|+|+||.+.
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~ 49 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSY 49 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 4458999999999 899999999999999999999753
No 206
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.56 E-value=0.00086 Score=74.34 Aligned_cols=99 Identities=25% Similarity=0.305 Sum_probs=70.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||++|+.+|..|++.|.+|+++++.+.... .++..+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------------~~~~~~---------------- 215 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP--------------------GEDKEI---------------- 215 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC--------------------cCCHHH----------------
Confidence 35899999999999999999999999999998632110 000000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCC---cEEec
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG---QCYAG 233 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg---~~i~a 233 (678)
...+.+.|.+ .+..++.+++|++++.+++++.+.+.++ +++.+
T Consensus 216 --------------------------------~~~l~~~l~~--~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~ 261 (462)
T PRK06416 216 --------------------------------SKLAERALKK--RGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEA 261 (462)
T ss_pred --------------------------------HHHHHHHHHH--cCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEe
Confidence 0122233322 2345788999999988777888877766 67999
Q ss_pred cEEEEecCCCch
Q 005770 234 DLLIGADGIWSK 245 (678)
Q Consensus 234 ~~vVgADG~~S~ 245 (678)
|.||.|-|....
T Consensus 262 D~vi~a~G~~p~ 273 (462)
T PRK06416 262 DYVLVAVGRRPN 273 (462)
T ss_pred CEEEEeeCCccC
Confidence 999999998654
No 207
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.56 E-value=0.00025 Score=78.45 Aligned_cols=32 Identities=31% Similarity=0.575 Sum_probs=30.6
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
+|+||||||+|+++|..|++.|.+|+|+|+.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999999999999863
No 208
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.56 E-value=0.00055 Score=75.52 Aligned_cols=32 Identities=38% Similarity=0.613 Sum_probs=29.2
Q ss_pred eEEEECCCHHHHHHHHHHHHcC--CcEEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKG--FEVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g--~~~~~~e~~~ 110 (678)
+|+|||||++|+++|..|++.| .+|+|||+.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~ 35 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence 7999999999999999999975 5899999874
No 209
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.55 E-value=0.00083 Score=73.10 Aligned_cols=103 Identities=27% Similarity=0.337 Sum_probs=76.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccce
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~ 155 (678)
.+..++|||||+.|+.+|..+++.|.+|+|+|+.+...+ ..+..+
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp--------------------~~D~ei--------------- 216 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP--------------------GEDPEI--------------- 216 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC--------------------cCCHHH---------------
Confidence 456799999999999999999999999999998743211 010011
Q ss_pred eeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCc--EEec
Q 005770 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQ--CYAG 233 (678)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~--~i~a 233 (678)
...+.+.|.+ ....++.+++++.++..++++.+++++|+ ++++
T Consensus 217 ---------------------------------~~~~~~~l~~--~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~a 261 (454)
T COG1249 217 ---------------------------------SKELTKQLEK--GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEA 261 (454)
T ss_pred ---------------------------------HHHHHHHHHh--CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEe
Confidence 1223333333 34457889999999988888999998876 7999
Q ss_pred cEEEEecCCCchhhh
Q 005770 234 DLLIGADGIWSKVRK 248 (678)
Q Consensus 234 ~~vVgADG~~S~VR~ 248 (678)
|.|+.|-|+.-.+-.
T Consensus 262 d~vLvAiGR~Pn~~~ 276 (454)
T COG1249 262 DAVLVAIGRKPNTDG 276 (454)
T ss_pred eEEEEccCCccCCCC
Confidence 999999998766654
No 210
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.54 E-value=0.00097 Score=73.96 Aligned_cols=101 Identities=23% Similarity=0.293 Sum_probs=72.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||++|+.+|..|++.|.+|+++|+.+.... .++..+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~--------------------~~~~~~---------------- 213 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP--------------------GEDAEV---------------- 213 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC--------------------CCCHHH----------------
Confidence 36899999999999999999999999999998632100 000000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCC--cEEecc
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG--QCYAGD 234 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg--~~i~a~ 234 (678)
...+.+.|.+ .+..++.+++|.+++.+++++.+.+.+| +++.+|
T Consensus 214 --------------------------------~~~~~~~l~~--~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D 259 (461)
T TIGR01350 214 --------------------------------SKVVAKALKK--KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGE 259 (461)
T ss_pred --------------------------------HHHHHHHHHH--cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeC
Confidence 0112233332 2345788999999988778888877777 479999
Q ss_pred EEEEecCCCchhh
Q 005770 235 LLIGADGIWSKVR 247 (678)
Q Consensus 235 ~vVgADG~~S~VR 247 (678)
.||.|.|....+.
T Consensus 260 ~vi~a~G~~p~~~ 272 (461)
T TIGR01350 260 KVLVAVGRKPNTE 272 (461)
T ss_pred EEEEecCCcccCC
Confidence 9999999876543
No 211
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.54 E-value=0.00025 Score=80.38 Aligned_cols=33 Identities=36% Similarity=0.686 Sum_probs=30.6
Q ss_pred eEEEECCCHHHHHHHHHHH----HcCCcEEEEecccc
Q 005770 79 RILVAGGGIGGLVFALAAK----RKGFEVLVFEKDMS 111 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~----~~g~~~~~~e~~~~ 111 (678)
||||||||.|||++|+.++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999754
No 212
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.54 E-value=0.00075 Score=73.85 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=32.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
+.+.+|+|||||.+|+.+|..|.+.+++|+|||+++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~ 43 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRN 43 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCC
Confidence 455789999999999999999988789999999864
No 213
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.53 E-value=8.3e-05 Score=82.38 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
+++||+||||||+|+++|+.++++|.+|+|+|++
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~ 35 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR 35 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4589999999999999999999999999999974
No 214
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.52 E-value=0.00052 Score=75.42 Aligned_cols=32 Identities=34% Similarity=0.591 Sum_probs=29.7
Q ss_pred eEEEECCCHHHHHHHHHHHHc--CCcEEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRK--GFEVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~--g~~~~~~e~~~ 110 (678)
+|+|||||++|+.+|..|++. +++|+|+|+.+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 799999999999999999987 68999999975
No 215
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00012 Score=73.41 Aligned_cols=50 Identities=24% Similarity=0.505 Sum_probs=41.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAI 136 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l 136 (678)
++||+|||||.||++||+.|+++|.++.||-+... ++..+..++.+|.++
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs----------ALhfsSGslDlL~~l 51 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS----------ALHFSSGSLDLLGRL 51 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh----------hhhcccccHHHhhcC
Confidence 68999999999999999999999999999987643 334555566777766
No 216
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.51 E-value=0.00049 Score=72.60 Aligned_cols=151 Identities=16% Similarity=0.183 Sum_probs=73.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcC-CcEEEEecccccccCCcccccceeeChhHHH--HHHhcChhHHHHHHHhcccccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNALA--ALEAIDLDVAEEVMRAGCVTGD 153 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g-~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~--~L~~l~~gl~~~~~~~~~~~~~ 153 (678)
.+|+++||.||++|++|+.|...+ +++..+|+.+......| +.+....|. .|+.|- -+ ..+....
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~g-----mll~~~~~q~~fl~Dlv-t~------~~P~s~~ 69 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPG-----MLLPGARMQVSFLKDLV-TL------RDPTSPF 69 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGG-----G--SS-B-SS-TTSSSS-TT------T-TTSTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCc-----cCCCCCccccccccccC-cC------cCCCCcc
Confidence 479999999999999999999887 99999999876544433 112111111 122220 00 0000000
Q ss_pred ceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEEeCC----eEEEEEc-
Q 005770 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGD----KVSVVLE- 226 (678)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~~~~~~~----~v~v~~~- 226 (678)
.+..+... .++ +..|- ..+ .....|.++.+.|.-.+.. ..++++.+|++|+..++ .++|++.
T Consensus 70 sflnYL~~-~~r-l~~f~------~~~---~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~ 138 (341)
T PF13434_consen 70 SFLNYLHE-HGR-LYEFY------NRG---YFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD 138 (341)
T ss_dssp SHHHHHHH-TT--HHHHH------HH-----SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE
T ss_pred cHHHHHHH-cCC-hhhhh------hcC---CCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee
Confidence 00000000 000 00000 000 1245788888887665532 23888999999987654 4778874
Q ss_pred ---CCcEEeccEEEEecCCCchhhhhh
Q 005770 227 ---NGQCYAGDLLIGADGIWSKVRKNL 250 (678)
Q Consensus 227 ---dg~~i~a~~vVgADG~~S~VR~~l 250 (678)
+++++.|+-||.|-|..-.+-..+
T Consensus 139 ~~g~~~~~~ar~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 139 SDGDGETYRARNVVLATGGQPRIPEWF 165 (341)
T ss_dssp TTS-EEEEEESEEEE----EE---GGG
T ss_pred cCCCeeEEEeCeEEECcCCCCCCCcch
Confidence 346899999999999544444433
No 217
>PRK06116 glutathione reductase; Validated
Probab=97.51 E-value=0.0011 Score=73.35 Aligned_cols=99 Identities=25% Similarity=0.299 Sum_probs=70.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||++|+.+|..|++.|.+|+++++.+.... .++..+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--------------------~~~~~~---------------- 210 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR--------------------GFDPDI---------------- 210 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc--------------------ccCHHH----------------
Confidence 46899999999999999999999999999997632110 000000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCe-EEEEEcCCcEEeccE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDL 235 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~-v~v~~~dg~~i~a~~ 235 (678)
...+.+.|.+ .+..++.+++|.+++.++++ +.+++.+|+++.+|.
T Consensus 211 --------------------------------~~~l~~~L~~--~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~ 256 (450)
T PRK06116 211 --------------------------------RETLVEEMEK--KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDC 256 (450)
T ss_pred --------------------------------HHHHHHHHHH--CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCE
Confidence 0122222322 23457889999999876555 778888898999999
Q ss_pred EEEecCCCch
Q 005770 236 LIGADGIWSK 245 (678)
Q Consensus 236 vVgADG~~S~ 245 (678)
||.|.|....
T Consensus 257 Vv~a~G~~p~ 266 (450)
T PRK06116 257 LIWAIGREPN 266 (450)
T ss_pred EEEeeCCCcC
Confidence 9999997543
No 218
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.50 E-value=9.2e-05 Score=81.59 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=31.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
++||+||||||+|+++|+.++++|++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 589999999999999999999999999999985
No 219
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.49 E-value=0.00011 Score=82.30 Aligned_cols=35 Identities=29% Similarity=0.568 Sum_probs=32.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~ 112 (678)
.||+|||||++||++|..|+++|++|+|+|++..+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 58999999999999999999999999999998643
No 220
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.49 E-value=0.0008 Score=67.08 Aligned_cols=38 Identities=34% Similarity=0.546 Sum_probs=34.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHc--CCcEEEEecccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 111 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~--g~~~~~~e~~~~ 111 (678)
....+|.+|||||++|++.|..|.-+ +.+|.|+|+...
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~ 84 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKS 84 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhh
Confidence 45679999999999999999999887 999999999754
No 221
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.48 E-value=0.00014 Score=85.86 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..++|+||||||||+++|..|+++|++|+|+|+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 457999999999999999999999999999998753
No 222
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.46 E-value=0.0026 Score=76.16 Aligned_cols=37 Identities=38% Similarity=0.555 Sum_probs=33.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...+||+|||||.|||++|+.+++.|.+|+|+||...
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3468999999999999999999999999999999764
No 223
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.46 E-value=0.00018 Score=79.06 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=32.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKR--KGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~--~g~~~~~~e~~~~ 111 (678)
...+|+||||||||+.+|..|++ .|++|+|||+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 45689999999999999999997 7999999999864
No 224
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.44 E-value=0.00013 Score=81.67 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=45.7
Q ss_pred HHHHHHHHhcC--CceEEeCCeEEEEEEeCCe-EEEEEcCCcEEeccEEEEecCCCchhhhhh
Q 005770 191 TLQQILAKAVG--DEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVRKNL 250 (678)
Q Consensus 191 ~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~-v~v~~~dg~~i~a~~vVgADG~~S~VR~~l 250 (678)
.+.+.|.+.+. +..++++++|++|..++++ +.|.+.+|++++||.||.|-|....+++.+
T Consensus 230 ~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 230 QIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhC
Confidence 45555655552 3468899999999876554 457778898999999999999988887765
No 225
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.44 E-value=0.00014 Score=80.75 Aligned_cols=35 Identities=34% Similarity=0.580 Sum_probs=32.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
..+||+||||||+|+++|+.|+++|++|+|+|+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46899999999999999999999999999999863
No 226
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.44 E-value=0.00013 Score=80.89 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=32.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
|..+||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35699999999999999999999999999999983
No 227
>PLN02507 glutathione reductase
Probab=97.44 E-value=0.0017 Score=72.42 Aligned_cols=100 Identities=20% Similarity=0.317 Sum_probs=72.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+.+... +.+ .+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~---------~d~-----------~~---------------- 246 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG---------FDD-----------EM---------------- 246 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc---------cCH-----------HH----------------
Confidence 358999999999999999999999999999976321100 000 00
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~v 236 (678)
+..+.+.|.+ .+..++.+++|++++.+++++.+.+.+|+++.+|+|
T Consensus 247 --------------------------------~~~l~~~l~~--~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~v 292 (499)
T PLN02507 247 --------------------------------RAVVARNLEG--RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVV 292 (499)
T ss_pred --------------------------------HHHHHHHHHh--CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEE
Confidence 1122333322 234577899999998777788888888889999999
Q ss_pred EEecCCCchh
Q 005770 237 IGADGIWSKV 246 (678)
Q Consensus 237 VgADG~~S~V 246 (678)
|.|-|.....
T Consensus 293 l~a~G~~pn~ 302 (499)
T PLN02507 293 LFATGRAPNT 302 (499)
T ss_pred EEeecCCCCC
Confidence 9999976543
No 228
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.00014 Score=78.23 Aligned_cols=35 Identities=29% Similarity=0.594 Sum_probs=32.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~ 112 (678)
++|+|+|||+|||++|..|+.+|++|+|+|+++..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~ 35 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRL 35 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCcc
Confidence 47999999999999999999999999999998643
No 229
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.41 E-value=0.00017 Score=69.97 Aligned_cols=32 Identities=41% Similarity=0.653 Sum_probs=30.3
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
||+||||||+|+++|..|++.|++++|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998764
No 230
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.41 E-value=0.0019 Score=71.52 Aligned_cols=99 Identities=24% Similarity=0.368 Sum_probs=71.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
.+|+|||+|..|+.+|..|++.|.+|+++++.+..... ..+ .+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~---------~d~-----------~~----------------- 220 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG---------EDA-----------DA----------------- 220 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC---------CCH-----------HH-----------------
Confidence 57999999999999999999999999999976321100 000 00
Q ss_pred eeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEE
Q 005770 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLI 237 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vV 237 (678)
...+.+.|.+ .+..++.++++++++.+++++.+++.+|+++.+|.||
T Consensus 221 -------------------------------~~~l~~~L~~--~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl 267 (466)
T PRK07845 221 -------------------------------AEVLEEVFAR--RGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHAL 267 (466)
T ss_pred -------------------------------HHHHHHHHHH--CCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEE
Confidence 1122333322 2334778899999987777888888889899999999
Q ss_pred EecCCCchh
Q 005770 238 GADGIWSKV 246 (678)
Q Consensus 238 gADG~~S~V 246 (678)
.|.|.....
T Consensus 268 ~a~G~~pn~ 276 (466)
T PRK07845 268 MAVGSVPNT 276 (466)
T ss_pred EeecCCcCC
Confidence 999986544
No 231
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.40 E-value=0.00019 Score=83.30 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
....+|+||||||||+++|..|+++|++|+|+|+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 45679999999999999999999999999999985
No 232
>PRK07233 hypothetical protein; Provisional
Probab=97.39 E-value=0.00015 Score=79.59 Aligned_cols=53 Identities=23% Similarity=0.079 Sum_probs=40.2
Q ss_pred HHHHHHHhcC--CceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCCCc
Q 005770 192 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 244 (678)
Q Consensus 192 l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~~S 244 (678)
|.+.|.+.+. +..++.+++|++++.+++++++...++++++||.||.|-..+.
T Consensus 200 l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~ 254 (434)
T PRK07233 200 LIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPI 254 (434)
T ss_pred HHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHH
Confidence 4455555542 3358999999999988888776667778999999999988753
No 233
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.39 E-value=0.0019 Score=71.26 Aligned_cols=98 Identities=23% Similarity=0.334 Sum_probs=70.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||+.|+.+|..|++.|.+|+++++.+... ..++..+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll--------------------~~~d~~~---------------- 212 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL--------------------RHLDEDI---------------- 212 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc--------------------cccCHHH----------------
Confidence 3589999999999999999999999999999763210 0010000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~v 236 (678)
...+.+.+ + ....++.+++|++++.+++++.+++.+|+++.+|.|
T Consensus 213 --------------------------------~~~l~~~~-~--~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~v 257 (452)
T TIGR03452 213 --------------------------------SDRFTEIA-K--KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVL 257 (452)
T ss_pred --------------------------------HHHHHHHH-h--cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEE
Confidence 01122222 1 124577899999998777778888888889999999
Q ss_pred EEecCCCch
Q 005770 237 IGADGIWSK 245 (678)
Q Consensus 237 VgADG~~S~ 245 (678)
|.|.|....
T Consensus 258 l~a~G~~pn 266 (452)
T TIGR03452 258 LVATGRVPN 266 (452)
T ss_pred EEeeccCcC
Confidence 999997643
No 234
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.37 E-value=0.00018 Score=85.49 Aligned_cols=35 Identities=40% Similarity=0.462 Sum_probs=32.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
...+|+|||||||||++|..|+++|++|+|||+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 46899999999999999999999999999999874
No 235
>PRK12831 putative oxidoreductase; Provisional
Probab=97.36 E-value=0.00022 Score=78.80 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=33.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
....||+||||||+|+++|..|+++|++|+|+|+.+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 456899999999999999999999999999999864
No 236
>PTZ00058 glutathione reductase; Provisional
Probab=97.35 E-value=0.00025 Score=79.73 Aligned_cols=37 Identities=35% Similarity=0.514 Sum_probs=33.8
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 73 ~~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
+...++||+||||||+|.++|..+++.|.+|+|||+.
T Consensus 44 ~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 44 KPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred CCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 3346789999999999999999999999999999986
No 237
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.33 E-value=0.0026 Score=70.17 Aligned_cols=98 Identities=21% Similarity=0.307 Sum_probs=70.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||++|+.+|..|++.|.+|+++++.+.... .++ +++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~--------------------~~d----~~~------------ 209 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR--------------------GFD----DDM------------ 209 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc--------------------ccC----HHH------------
Confidence 35799999999999999999999999999997532100 000 000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~v 236 (678)
+..+.+.|.+ .+..++.++++++++.+++++.+++.+|+++.+|.|
T Consensus 210 --------------------------------~~~l~~~l~~--~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~v 255 (446)
T TIGR01424 210 --------------------------------RALLARNMEG--RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVV 255 (446)
T ss_pred --------------------------------HHHHHHHHHH--CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEE
Confidence 0112223332 234577899999998777778888888889999999
Q ss_pred EEecCCCc
Q 005770 237 IGADGIWS 244 (678)
Q Consensus 237 VgADG~~S 244 (678)
|.|-|...
T Consensus 256 iva~G~~p 263 (446)
T TIGR01424 256 LFATGRSP 263 (446)
T ss_pred EEeeCCCc
Confidence 99999753
No 238
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.33 E-value=0.00022 Score=75.78 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=31.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
+||+|||||++|+++|..|++.|.+|+|+|++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~ 34 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRN 34 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 699999999999999999999999999999864
No 239
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.32 E-value=0.00021 Score=79.28 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
+||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~ 32 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERG 32 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 69999999999999999999999999999986
No 240
>PLN02576 protoporphyrinogen oxidase
Probab=97.32 E-value=0.00022 Score=79.85 Aligned_cols=36 Identities=36% Similarity=0.472 Sum_probs=32.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~-g~~~~~~e~~~~ 111 (678)
..+||+|||||++||++|..|+++ |++|+|+|+++.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~r 47 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDR 47 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 346899999999999999999999 999999999753
No 241
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.32 E-value=0.0027 Score=70.09 Aligned_cols=100 Identities=18% Similarity=0.174 Sum_probs=69.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||..|+.+|..|++.|.+|+|+++.+..... +.+ .+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~---------~d~-----------~~---------------- 209 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS---------FDS-----------MI---------------- 209 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc---------cCH-----------HH----------------
Confidence 368999999999999999999999999999986422100 000 00
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCe-EEEEEcCC-cEEecc
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLENG-QCYAGD 234 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~-v~v~~~dg-~~i~a~ 234 (678)
+..+.+.|.+ .+..++.++++++++.++++ +.+++++| +++.+|
T Consensus 210 --------------------------------~~~~~~~l~~--~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D 255 (450)
T TIGR01421 210 --------------------------------SETITEEYEK--EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVD 255 (450)
T ss_pred --------------------------------HHHHHHHHHH--cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcC
Confidence 1122233322 23447788899999865444 67778788 579999
Q ss_pred EEEEecCCCchh
Q 005770 235 LLIGADGIWSKV 246 (678)
Q Consensus 235 ~vVgADG~~S~V 246 (678)
.||.|-|.....
T Consensus 256 ~vi~a~G~~pn~ 267 (450)
T TIGR01421 256 ELIWAIGRKPNT 267 (450)
T ss_pred EEEEeeCCCcCc
Confidence 999999975443
No 242
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00046 Score=69.58 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=28.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEE
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVF 106 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~ 106 (678)
...|||+||||||||.++|+..||+|++.-++
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ 240 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV 240 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhh
Confidence 45699999999999999999999999987665
No 243
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.30 E-value=0.00022 Score=79.07 Aligned_cols=32 Identities=41% Similarity=0.710 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
+||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 79999999999999999999999999999983
No 244
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.28 E-value=0.003 Score=70.06 Aligned_cols=100 Identities=29% Similarity=0.372 Sum_probs=69.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.... ..+..+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~--------------------~~d~~~---------------- 215 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP--------------------NEDAEV---------------- 215 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC--------------------ccCHHH----------------
Confidence 35899999999999999999999999999997532110 000000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEc--CC--cEEe
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE--NG--QCYA 232 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~--dg--~~i~ 232 (678)
...+.+.|.+ .+..++.+++|++++.+++.+.+++. +| +++.
T Consensus 216 --------------------------------~~~l~~~l~~--~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~ 261 (466)
T PRK07818 216 --------------------------------SKEIAKQYKK--LGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELE 261 (466)
T ss_pred --------------------------------HHHHHHHHHH--CCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEE
Confidence 0122333332 23457889999999877666666664 66 3799
Q ss_pred ccEEEEecCCCchh
Q 005770 233 GDLLIGADGIWSKV 246 (678)
Q Consensus 233 a~~vVgADG~~S~V 246 (678)
+|.||.|-|....+
T Consensus 262 ~D~vi~a~G~~pn~ 275 (466)
T PRK07818 262 ADKVLQAIGFAPRV 275 (466)
T ss_pred eCEEEECcCcccCC
Confidence 99999999976543
No 245
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.28 E-value=0.0034 Score=69.06 Aligned_cols=98 Identities=26% Similarity=0.310 Sum_probs=67.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+..... .+..+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~--------------------~~~~~---------------- 200 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR--------------------EEPSV---------------- 200 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC--------------------CCHHH----------------
Confidence 358999999999999999999999999999986321100 00000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~v 236 (678)
+..+.+.|.+ .+..++.+++|++++.+++.+.++. +|+++.+|.|
T Consensus 201 --------------------------------~~~~~~~l~~--~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~v 245 (438)
T PRK07251 201 --------------------------------AALAKQYMEE--DGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDAL 245 (438)
T ss_pred --------------------------------HHHHHHHHHH--cCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEE
Confidence 0112222222 2345778899999987666666554 5678999999
Q ss_pred EEecCCCch
Q 005770 237 IGADGIWSK 245 (678)
Q Consensus 237 VgADG~~S~ 245 (678)
|.|-|....
T Consensus 246 iva~G~~p~ 254 (438)
T PRK07251 246 LYATGRKPN 254 (438)
T ss_pred EEeeCCCCC
Confidence 999998654
No 246
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.28 E-value=0.00034 Score=75.92 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHH-HHcCCcEEEEeccccc
Q 005770 76 KKLRILVAGGGIGGLVFALAA-KRKGFEVLVFEKDMSA 112 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l-~~~g~~~~~~e~~~~~ 112 (678)
....|+||||||+|+.+|..| ++.|++|+|+|+.+.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 456899999999999999965 5679999999998654
No 247
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.28 E-value=0.0032 Score=69.70 Aligned_cols=100 Identities=20% Similarity=0.274 Sum_probs=67.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||++|+.+|..|++.|.+|+|+++.+.... ..+ .++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~--------------------~~d----~e~------------ 213 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP--------------------GED----EDI------------ 213 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc--------------------ccc----HHH------------
Confidence 35799999999999999999999999999998632110 000 000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCC-cEEeccE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG-QCYAGDL 235 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg-~~i~a~~ 235 (678)
+..+.+.|.+ .+..++.++++++++.++..+.++..++ +++.+|+
T Consensus 214 --------------------------------~~~l~~~L~~--~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~ 259 (458)
T PRK06912 214 --------------------------------AHILREKLEN--DGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEF 259 (458)
T ss_pred --------------------------------HHHHHHHHHH--CCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCE
Confidence 1122333332 2345778899999987666555543322 3799999
Q ss_pred EEEecCCCchh
Q 005770 236 LIGADGIWSKV 246 (678)
Q Consensus 236 vVgADG~~S~V 246 (678)
||.|.|....+
T Consensus 260 vivA~G~~p~~ 270 (458)
T PRK06912 260 VLVSVGRKPRV 270 (458)
T ss_pred EEEecCCccCC
Confidence 99999987654
No 248
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.28 E-value=0.00024 Score=77.36 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=34.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
+..+||+|||+|.+|+++|..|++.|.+|+++|++..
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~ 38 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPY 38 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCC
Confidence 4679999999999999999999999999999999853
No 249
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.27 E-value=0.00022 Score=80.03 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcC--CceEEeCCeEEEEEEeCCe-EEEEEcCCcEEeccEEEEecCCCchhhhhh
Q 005770 190 MTLQQILAKAVG--DEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVRKNL 250 (678)
Q Consensus 190 ~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~-v~v~~~dg~~i~a~~vVgADG~~S~VR~~l 250 (678)
..+.+.|.+.+. ...++++++|+++..++++ +.|++++|+++.||.||.|-+....+.+.+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc
Confidence 345555555542 3468899999999877765 568888898999999999888777666554
No 250
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.27 E-value=0.00039 Score=76.56 Aligned_cols=37 Identities=30% Similarity=0.414 Sum_probs=33.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
....++|+||||||+|+++|..|+++|++|+|+|+.+
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~ 166 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALH 166 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 3456899999999999999999999999999999874
No 251
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.25 E-value=0.00051 Score=70.98 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=66.5
Q ss_pred CCcEEeCCCCCCCCCcceEEeCCCcccccceEEEEe---------------CCEEEEEeCCCCCceEecCCCCceeecCC
Q 005770 567 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK---------------DGAFYLIDLQSEHGTYVTDNEGRRYRVSS 631 (678)
Q Consensus 567 ~~~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~---------------~~~~~i~Dl~S~nGt~v~~~~~~~~~~~~ 631 (678)
...+..||++. ||..+....+|.+|-.|..- ...+++.|. |+||||||.. .+..
T Consensus 63 nd~f~fGR~~~-----~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~Dh-S~nGT~VN~e-----~i~k 131 (475)
T KOG0615|consen 63 NDEFTFGRGDS-----CDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDH-SRNGTFVNDE-----MIGK 131 (475)
T ss_pred cceEEecCCCc-----ccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEec-ccCcccccHh-----Hhhc
Confidence 66789999988 66677666677666655322 356899995 9999999988 8999
Q ss_pred CCcEEeCCCCEEEECCCceEEEEEEecc
Q 005770 632 NFPARFRPSDTIEFGSDKKAIFRVKVIG 659 (678)
Q Consensus 632 ~~~~~l~~gd~i~~g~~~~~~~~~~~~~ 659 (678)
+....|+.||.|.||-+....|.++.+.
T Consensus 132 ~~~r~lkN~dei~is~p~~~~~v~~~~s 159 (475)
T KOG0615|consen 132 GLSRILKNGDEISISIPALKIFVFEDLS 159 (475)
T ss_pred cccccccCCCEEEeccchhheeeeeccc
Confidence 9999999999999999877778888863
No 252
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.25 E-value=0.00018 Score=79.54 Aligned_cols=37 Identities=32% Similarity=0.520 Sum_probs=33.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
....+|+||||||+|+++|..|+++|++|+|+|+.+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~ 174 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK 174 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 4567999999999999999999999999999998753
No 253
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.24 E-value=0.00031 Score=73.97 Aligned_cols=36 Identities=39% Similarity=0.637 Sum_probs=33.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...+|+|||||++|+++|+.|+..|++|.|+|+++.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps 158 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS 158 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 346899999999999999999999999999999853
No 254
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.24 E-value=0.0037 Score=69.29 Aligned_cols=100 Identities=26% Similarity=0.242 Sum_probs=68.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.... .++..+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~--------------------~~d~~~---------------- 217 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP--------------------GTDTET---------------- 217 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC--------------------CCCHHH----------------
Confidence 46899999999999999999999999999998632110 000000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEc---C--CcEE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE---N--GQCY 231 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~---d--g~~i 231 (678)
+..+.+.|.+ .+..++.+++|++++.+++++.+++. + ++++
T Consensus 218 --------------------------------~~~l~~~l~~--~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i 263 (466)
T PRK06115 218 --------------------------------AKTLQKALTK--QGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETL 263 (466)
T ss_pred --------------------------------HHHHHHHHHh--cCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEE
Confidence 0112222322 13457889999999876667766553 2 3579
Q ss_pred eccEEEEecCCCchh
Q 005770 232 AGDLLIGADGIWSKV 246 (678)
Q Consensus 232 ~a~~vVgADG~~S~V 246 (678)
.+|.||.|-|....+
T Consensus 264 ~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 264 QADYVLVAIGRRPYT 278 (466)
T ss_pred EeCEEEEccCCcccc
Confidence 999999999976543
No 255
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.24 E-value=0.0035 Score=69.57 Aligned_cols=99 Identities=20% Similarity=0.256 Sum_probs=67.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||++|+.+|..|++.|.+|+|+++.+..... .+..+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~--------------------~d~~~---------------- 209 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR--------------------EEPEI---------------- 209 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc--------------------cCHHH----------------
Confidence 368999999999999999999999999999986321100 00000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcC---CcEEec
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLEN---GQCYAG 233 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~d---g~~i~a 233 (678)
...+++.|.+ .+..++.+++|++++.+++.+.+++.+ ++++.+
T Consensus 210 --------------------------------~~~l~~~l~~--~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~ 255 (463)
T TIGR02053 210 --------------------------------SAAVEEALAE--EGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEA 255 (463)
T ss_pred --------------------------------HHHHHHHHHH--cCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEe
Confidence 0122233332 234577889999998766666666542 358999
Q ss_pred cEEEEecCCCch
Q 005770 234 DLLIGADGIWSK 245 (678)
Q Consensus 234 ~~vVgADG~~S~ 245 (678)
|.||.|-|....
T Consensus 256 D~ViiA~G~~p~ 267 (463)
T TIGR02053 256 DELLVATGRRPN 267 (463)
T ss_pred CEEEEeECCCcC
Confidence 999999997554
No 256
>PLN02268 probable polyamine oxidase
Probab=97.23 E-value=0.00031 Score=77.29 Aligned_cols=39 Identities=23% Similarity=0.214 Sum_probs=35.2
Q ss_pred eEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCC
Q 005770 204 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI 242 (678)
Q Consensus 204 ~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~ 242 (678)
.++++++|++|+..+++|+|++.+|+++.||.||.|--.
T Consensus 212 ~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 212 DIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred ceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence 488999999999999999999999989999999999743
No 257
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.23 E-value=0.0039 Score=65.76 Aligned_cols=136 Identities=21% Similarity=0.221 Sum_probs=75.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCC--cEEEEecccccccCC-cccccceeeChhHHHHHHhcChhHHHHHHHhcccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDMSAIRGE-GQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVT 151 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~--~~~~~e~~~~~~~~~-g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~ 151 (678)
.....|+|||||..+..++..|.+++- +|+++-|.+...... ..+. .-...|.-++.+..+....-.++.+....
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~-ne~f~P~~v~~f~~l~~~~R~~~l~~~~~- 265 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFV-NEIFSPEYVDYFYSLPDEERRELLREQRH- 265 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCH-HGGGSHHHHHHHHTS-HHHHHHHHHHTGG-
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccch-hhhcCchhhhhhhcCCHHHHHHHHHHhHh-
Confidence 456789999999999999999999875 799998876432211 1110 01256666677766643222222222100
Q ss_pred ccceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHH---HH-Hhc-C--CceEEeCCeEEEEEEeCC-eEEE
Q 005770 152 GDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQI---LA-KAV-G--DEIILNESNVIDFKDHGD-KVSV 223 (678)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~---L~-~~~-~--~~~i~~~~~v~~~~~~~~-~v~v 223 (678)
.+ .-.|+...++++ |. +.+ + ...++.+++|++++..++ ++.+
T Consensus 266 ---~n---------------------------y~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l 315 (341)
T PF13434_consen 266 ---TN---------------------------YGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRL 315 (341)
T ss_dssp ---GT---------------------------SSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEE
T ss_pred ---hc---------------------------CCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEE
Confidence 00 012233333222 21 122 2 235888999999999884 8999
Q ss_pred EEcCC-----cEEeccEEEEecCC
Q 005770 224 VLENG-----QCYAGDLLIGADGI 242 (678)
Q Consensus 224 ~~~dg-----~~i~a~~vVgADG~ 242 (678)
++.+. .++.+|+||.|.|-
T Consensus 316 ~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 316 TLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp EEEETTT--EEEEEESEEEE---E
T ss_pred EEEECCCCCeEEEecCEEEEcCCc
Confidence 98762 37899999999995
No 258
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.21 E-value=0.00033 Score=78.18 Aligned_cols=33 Identities=33% Similarity=0.534 Sum_probs=31.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
.+||+||||||+|+++|+.|+++|.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 259
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.21 E-value=0.00048 Score=79.62 Aligned_cols=39 Identities=31% Similarity=0.478 Sum_probs=34.8
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 73 ~~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
+.....+|+|||||++|+++|+.|+++|++|+|+|++..
T Consensus 234 ~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r 272 (808)
T PLN02328 234 EGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRAR 272 (808)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecccc
Confidence 345568999999999999999999999999999999753
No 260
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.21 E-value=0.0019 Score=63.73 Aligned_cols=38 Identities=26% Similarity=0.477 Sum_probs=33.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC------CcEEEEeccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKG------FEVLVFEKDMSA 112 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g------~~~~~~e~~~~~ 112 (678)
....+|+|||||+.|..+|+.|++++ +.++|+|...-.
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA 51 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIA 51 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccc
Confidence 34478999999999999999999998 899999987543
No 261
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.21 E-value=0.00037 Score=82.01 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=33.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
....+|+||||||||+++|..|+++|++|+|+|+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 3457899999999999999999999999999998753
No 262
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.19 E-value=0.004 Score=69.22 Aligned_cols=100 Identities=25% Similarity=0.248 Sum_probs=69.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+..... .+..+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~--------------------~d~~~---------------- 226 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA--------------------ADEQV---------------- 226 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc--------------------CCHHH----------------
Confidence 368999999999999999999999999999986421100 00000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcC--C--cEEe
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLEN--G--QCYA 232 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~d--g--~~i~ 232 (678)
...+.+.|.+ .+..++.+++|++++.+++++.+++.+ | +++.
T Consensus 227 --------------------------------~~~~~~~l~~--~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~ 272 (475)
T PRK06327 227 --------------------------------AKEAAKAFTK--QGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLE 272 (475)
T ss_pred --------------------------------HHHHHHHHHH--cCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEE
Confidence 0111222222 234578899999998877777777655 3 4799
Q ss_pred ccEEEEecCCCchh
Q 005770 233 GDLLIGADGIWSKV 246 (678)
Q Consensus 233 a~~vVgADG~~S~V 246 (678)
+|.||.|-|.....
T Consensus 273 ~D~vl~a~G~~p~~ 286 (475)
T PRK06327 273 VDKLIVSIGRVPNT 286 (475)
T ss_pred cCEEEEccCCccCC
Confidence 99999999976553
No 263
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.17 E-value=0.00046 Score=83.23 Aligned_cols=36 Identities=36% Similarity=0.552 Sum_probs=33.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..+||+|||||||||++|+.|++.|++|+|+|+.+.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~ 197 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE 197 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 468999999999999999999999999999998754
No 264
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.16 E-value=0.0044 Score=68.76 Aligned_cols=99 Identities=29% Similarity=0.286 Sum_probs=68.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
.+|+|||||++|+.+|..|++.|.+|+|+|+.+.... .++..+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~--------------------~~d~~~----------------- 217 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP--------------------AADKDI----------------- 217 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC--------------------cCCHHH-----------------
Confidence 6899999999999999999999999999998642110 000000
Q ss_pred eeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCC----cEEec
Q 005770 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG----QCYAG 233 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg----~~i~a 233 (678)
+..+.+.|.+. ..++.++++++++.+++++.+++.++ +++.+
T Consensus 218 -------------------------------~~~~~~~l~~~---v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~ 263 (471)
T PRK06467 218 -------------------------------VKVFTKRIKKQ---FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRY 263 (471)
T ss_pred -------------------------------HHHHHHHHhhc---eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEe
Confidence 01122233222 33677889999987777777776542 36999
Q ss_pred cEEEEecCCCchhh
Q 005770 234 DLLIGADGIWSKVR 247 (678)
Q Consensus 234 ~~vVgADG~~S~VR 247 (678)
|.||.|-|....+.
T Consensus 264 D~vi~a~G~~pn~~ 277 (471)
T PRK06467 264 DAVLVAVGRVPNGK 277 (471)
T ss_pred CEEEEeecccccCC
Confidence 99999999876553
No 265
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.16 E-value=0.00055 Score=80.49 Aligned_cols=36 Identities=33% Similarity=0.556 Sum_probs=33.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
....+|+||||||||+++|..|+++|++|+|+|+.+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~ 464 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH 464 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 356799999999999999999999999999999864
No 266
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.16 E-value=0.0036 Score=67.39 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=29.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEeccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDM 110 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~--g~~~~~~e~~~ 110 (678)
.+|+|||||+||+.+|..|.+. ..+|+|+++++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 4899999999999999999885 45899999875
No 267
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.15 E-value=0.00039 Score=76.89 Aligned_cols=59 Identities=25% Similarity=0.382 Sum_probs=42.2
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEeccccccc-------CCcc-cccc----eeeChhHHHHHHhcC
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIR-------GEGQ-YRGP----IQIQSNALAALEAID 137 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~-------~~g~-~~~~----~~l~~~~~~~L~~l~ 137 (678)
+|+|||||++||++|+.|+++|++|+|+|+++..-- ..|. .+.+ ....++.++++++++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg 71 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELN 71 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcC
Confidence 589999999999999999999999999998753210 0110 0011 123477888888884
No 268
>PRK06370 mercuric reductase; Validated
Probab=97.15 E-value=0.0051 Score=68.20 Aligned_cols=100 Identities=26% Similarity=0.347 Sum_probs=68.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+.... ..+..+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~--------------------~~~~~~---------------- 214 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP--------------------REDEDV---------------- 214 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc--------------------ccCHHH----------------
Confidence 36899999999999999999999999999998632110 000000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEc--C-CcEEec
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE--N-GQCYAG 233 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~--d-g~~i~a 233 (678)
+..+.+.|.+ .+..++.+++|.+++.+++++.+.+. + ++++.+
T Consensus 215 --------------------------------~~~l~~~l~~--~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~ 260 (463)
T PRK06370 215 --------------------------------AAAVREILER--EGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITG 260 (463)
T ss_pred --------------------------------HHHHHHHHHh--CCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEe
Confidence 0112222322 23457889999999877666655542 3 457999
Q ss_pred cEEEEecCCCchh
Q 005770 234 DLLIGADGIWSKV 246 (678)
Q Consensus 234 ~~vVgADG~~S~V 246 (678)
|.||.|-|.....
T Consensus 261 D~Vi~A~G~~pn~ 273 (463)
T PRK06370 261 SHILVAVGRVPNT 273 (463)
T ss_pred CEEEECcCCCcCC
Confidence 9999999976543
No 269
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.14 E-value=0.00054 Score=76.01 Aligned_cols=37 Identities=32% Similarity=0.443 Sum_probs=33.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...++|+||||||+|+++|..|+++|++|+|+|+.+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~ 177 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADR 177 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3457999999999999999999999999999998753
No 270
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.14 E-value=0.00057 Score=82.11 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=33.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...+|+|||||||||++|..|+++|++|+|+|+.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~ 464 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHV 464 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 457999999999999999999999999999998753
No 271
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.13 E-value=0.0054 Score=68.20 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=31.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 3689999999999999999999999999999864
No 272
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.12 E-value=0.0011 Score=73.14 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=27.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
++||+|||+||+|..+|. +..|.+|.|+|+.
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~ 32 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKG 32 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCC
Confidence 589999999999988864 4579999999985
No 273
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.12 E-value=0.00053 Score=79.28 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=33.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...+|+||||||+||++|..|++.|++|+|+|+.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 457999999999999999999999999999998743
No 274
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.11 E-value=0.0036 Score=66.84 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=35.7
Q ss_pred eEEeCCeEEEEEEe--CCeEEEEEcCCcEEeccEEEEecCCCchhhhh
Q 005770 204 IILNESNVIDFKDH--GDKVSVVLENGQCYAGDLLIGADGIWSKVRKN 249 (678)
Q Consensus 204 ~i~~~~~v~~~~~~--~~~v~v~~~dg~~i~a~~vVgADG~~S~VR~~ 249 (678)
..+...+.+++.++ ..++.++..+|.+..||.+|.|.|..-+....
T Consensus 122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~ 169 (474)
T COG4529 122 VRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADP 169 (474)
T ss_pred eeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCCCCcch
Confidence 34556788888777 66788889999999999999999976555444
No 275
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.11 E-value=0.00039 Score=72.15 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=29.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcC-CcEEEEecccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMS 111 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g-~~~~~~e~~~~ 111 (678)
||+||||+|++|+++|..|++.| .+|+|+|+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 69999999999999999999997 79999998653
No 276
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.10 E-value=0.0035 Score=73.90 Aligned_cols=99 Identities=22% Similarity=0.344 Sum_probs=68.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
.+|+|||||++|+.+|..|++.|.+|+|+|+.+... + +.++...
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll-------------~------~~ld~~~----------------- 184 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM-------------A------KQLDQTA----------------- 184 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh-------------h------hhcCHHH-----------------
Confidence 579999999999999999999999999999753210 0 0010000
Q ss_pred eeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEE
Q 005770 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLI 237 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vV 237 (678)
...+.+.|.+ .+..++.+++++++..++....+++.||+++.+|+||
T Consensus 185 -------------------------------~~~l~~~l~~--~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi 231 (785)
T TIGR02374 185 -------------------------------GRLLQRELEQ--KGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIV 231 (785)
T ss_pred -------------------------------HHHHHHHHHH--cCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEE
Confidence 0112222222 1334777888888876555566888999999999999
Q ss_pred EecCCCch
Q 005770 238 GADGIWSK 245 (678)
Q Consensus 238 gADG~~S~ 245 (678)
.|-|....
T Consensus 232 ~a~G~~Pn 239 (785)
T TIGR02374 232 MAAGIRPN 239 (785)
T ss_pred ECCCCCcC
Confidence 99997643
No 277
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.10 E-value=0.0025 Score=68.28 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=28.1
Q ss_pred eEEEECCCHHHHHHHHHHHHc---CCcEEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRK---GFEVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~---g~~~~~~e~~~ 110 (678)
+|+|||||++|+.+|..|.++ +++|+|+|++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~ 35 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSS 35 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCC
Confidence 489999999999999999644 78999999874
No 278
>PLN02487 zeta-carotene desaturase
Probab=97.09 E-value=0.00072 Score=75.96 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=46.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccC-------Ccc-cccc-e---eeChhHHHHHHhcChhHHHH
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-------EGQ-YRGP-I---QIQSNALAALEAIDLDVAEE 143 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~-------~g~-~~~~-~---~l~~~~~~~L~~l~~gl~~~ 143 (678)
...+|+|||||++||++|+.|+++|++|+|+|+.+...-. .|. ...+ . ...++.+++|+++ |+.++
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~L--Gl~~~ 151 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKV--GADEN 151 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhc--CCccc
Confidence 4469999999999999999999999999999997643210 010 0001 1 1246678888888 55544
Q ss_pred H
Q 005770 144 V 144 (678)
Q Consensus 144 ~ 144 (678)
+
T Consensus 152 ~ 152 (569)
T PLN02487 152 L 152 (569)
T ss_pred c
Confidence 3
No 279
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.08 E-value=0.00065 Score=72.69 Aligned_cols=49 Identities=24% Similarity=0.493 Sum_probs=40.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAI 136 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l 136 (678)
+||+|||+|++|+++|+.|+++|++|.|+|+... .+.++..++.+|..+
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~----------~~~~s~gs~d~L~~~ 49 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS----------ALHFSSGSLDLLSRL 49 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc----------hhhhhhHHHhHhhhc
Confidence 5899999999999999999999999999998632 234666677777766
No 280
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.03 E-value=0.00068 Score=73.36 Aligned_cols=34 Identities=44% Similarity=0.656 Sum_probs=32.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
++||+|||+|++|+++|+.|+++|.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999999999999863
No 281
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.03 E-value=0.00062 Score=76.33 Aligned_cols=35 Identities=37% Similarity=0.614 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
.++||||||+| +|+++|+.+++.|.+|+|+||.+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~ 40 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK 40 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 46899999999 999999999999999999998753
No 282
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.03 E-value=0.0081 Score=66.16 Aligned_cols=99 Identities=23% Similarity=0.229 Sum_probs=68.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+..... ..+ .+
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~---------~~~-----------~~---------------- 201 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR---------EDR-----------DI---------------- 201 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC---------cCH-----------HH----------------
Confidence 358999999999999999999999999999986321100 000 00
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~v 236 (678)
...+.+.|.+ .+..++.++++++++.+++.+.+..+++ ++.+|.|
T Consensus 202 --------------------------------~~~l~~~l~~--~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~v 246 (441)
T PRK08010 202 --------------------------------ADNIATILRD--QGVDIILNAHVERISHHENQVQVHSEHA-QLAVDAL 246 (441)
T ss_pred --------------------------------HHHHHHHHHh--CCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEE
Confidence 0112222322 2345778899999987777777766555 5899999
Q ss_pred EEecCCCchh
Q 005770 237 IGADGIWSKV 246 (678)
Q Consensus 237 VgADG~~S~V 246 (678)
|.|-|.....
T Consensus 247 l~a~G~~pn~ 256 (441)
T PRK08010 247 LIASGRQPAT 256 (441)
T ss_pred EEeecCCcCC
Confidence 9999987644
No 283
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.02 E-value=0.0075 Score=67.03 Aligned_cols=100 Identities=23% Similarity=0.274 Sum_probs=67.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHc---CCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRK---GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~---g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~ 153 (678)
..+|+|||||++|+.+|..++.. |.+|+|+|+.+.... .++..+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~--------------------~~d~~~------------- 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR--------------------GFDSTL------------- 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc--------------------ccCHHH-------------
Confidence 36799999999999999877654 999999997632110 000000
Q ss_pred ceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCe-EEEEEcCCcEEe
Q 005770 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLENGQCYA 232 (678)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~-v~v~~~dg~~i~ 232 (678)
...+.+.|.+ .+..++.++++++++.++++ ..+++.+|+++.
T Consensus 234 -----------------------------------~~~l~~~L~~--~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~ 276 (486)
T TIGR01423 234 -----------------------------------RKELTKQLRA--NGINIMTNENPAKVTLNADGSKHVTFESGKTLD 276 (486)
T ss_pred -----------------------------------HHHHHHHHHH--cCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEE
Confidence 0122233322 23447788889998865444 567777888999
Q ss_pred ccEEEEecCCCchh
Q 005770 233 GDLLIGADGIWSKV 246 (678)
Q Consensus 233 a~~vVgADG~~S~V 246 (678)
+|.||.|-|.....
T Consensus 277 ~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 277 VDVVMMAIGRVPRT 290 (486)
T ss_pred cCEEEEeeCCCcCc
Confidence 99999999976554
No 284
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.02 E-value=0.00084 Score=77.41 Aligned_cols=37 Identities=27% Similarity=0.482 Sum_probs=33.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
....+|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 3457999999999999999999999999999998753
No 285
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.01 E-value=0.016 Score=63.75 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=52.8
Q ss_pred EEeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEEeCCe-EEEEEcCCcEEeccEEEEecCCCchhhhhhcCCCCcccccc
Q 005770 185 RVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGY 261 (678)
Q Consensus 185 ~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~~~~~~~~-v~v~~~dg~~i~a~~vVgADG~~S~VR~~l~~~~~~~~~~~ 261 (678)
..++...+.+.|...+.. ..|..++.|+++....+. +-|.+..| .|++..+|-|.|.+-.--..+.+...+-+.-.
T Consensus 182 G~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~~ 260 (856)
T KOG2844|consen 182 GVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAGVKVPLVPMH 260 (856)
T ss_pred cccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcCCcccceeee
Confidence 467888899999887633 347789999998754443 44555555 69999999999998644344433333434333
Q ss_pred EEEE
Q 005770 262 TCYT 265 (678)
Q Consensus 262 ~~~~ 265 (678)
..|.
T Consensus 261 H~Yv 264 (856)
T KOG2844|consen 261 HAYV 264 (856)
T ss_pred eeEE
Confidence 3333
No 286
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.01 E-value=0.0032 Score=74.38 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=33.0
Q ss_pred CceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCCCchh
Q 005770 202 DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 246 (678)
Q Consensus 202 ~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~~S~V 246 (678)
+..++.+++|++++.+. .+|++.+|+++.+|.||.|.|+...+
T Consensus 73 gI~~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVIATGs~p~~ 115 (847)
T PRK14989 73 GIKVLVGERAITINRQE--KVIHSSAGRTVFYDKLIMATGSYPWI 115 (847)
T ss_pred CCEEEcCCEEEEEeCCC--cEEEECCCcEEECCEEEECCCCCcCC
Confidence 34577788898887654 34567788899999999999987543
No 287
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.00 E-value=0.0048 Score=63.42 Aligned_cols=35 Identities=34% Similarity=0.552 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
.++||+|||+||.|-.+|+..++.|++..++|++.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~ 72 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRG 72 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccC
Confidence 57999999999999999999999999999999974
No 288
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.99 E-value=0.0069 Score=66.42 Aligned_cols=98 Identities=21% Similarity=0.342 Sum_probs=66.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||++|+.+|..|++.|.+|+++++.+... . ..++..+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~------------~-------~~~~~~~---------------- 181 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL------------N-------KLFDEEM---------------- 181 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC------------c-------cccCHHH----------------
Confidence 3589999999999999999999999999999763210 0 0000000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~v 236 (678)
...+.+.|.+ .+..++.++++.+++.++. + +.+.+|+++.+|+|
T Consensus 182 --------------------------------~~~~~~~l~~--~gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~v 225 (427)
T TIGR03385 182 --------------------------------NQIVEEELKK--HEINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMV 225 (427)
T ss_pred --------------------------------HHHHHHHHHH--cCCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEE
Confidence 0112222222 1234777889998876443 3 56678889999999
Q ss_pred EEecCCCch
Q 005770 237 IGADGIWSK 245 (678)
Q Consensus 237 VgADG~~S~ 245 (678)
|.|.|....
T Consensus 226 i~a~G~~p~ 234 (427)
T TIGR03385 226 ILATGIKPN 234 (427)
T ss_pred EECCCccCC
Confidence 999998643
No 289
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.98 E-value=0.00085 Score=67.37 Aligned_cols=34 Identities=35% Similarity=0.534 Sum_probs=32.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
+|++|||||.+|+.+|..|++.|.+|.|+||++.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~H 35 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNH 35 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEecccc
Confidence 7999999999999999999999999999999864
No 290
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.97 E-value=0.0012 Score=73.08 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc----CCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~----g~~~~~~e~~~~ 111 (678)
...+|+|||||++||++|..|++. |.+|+|+|+.+.
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~ 60 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDV 60 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCC
Confidence 457899999999999999999995 689999999864
No 291
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.97 E-value=0.0068 Score=66.67 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
.+|+|||||++|+.+|..|++.|.+|+|+++.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 589999999999999999999999999999863
No 292
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.96 E-value=0.0059 Score=72.15 Aligned_cols=100 Identities=23% Similarity=0.264 Sum_probs=68.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
..++|||||+.|+.+|..|++.|.+|+|+|+.+... + ..++...
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll-------------~------~~ld~~~----------------- 189 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM-------------A------EQLDQMG----------------- 189 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch-------------h------hhcCHHH-----------------
Confidence 579999999999999999999999999999753110 0 0010000
Q ss_pred eeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeC--CeEEEEEcCCcEEeccE
Q 005770 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHG--DKVSVVLENGQCYAGDL 235 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~--~~v~v~~~dg~~i~a~~ 235 (678)
...+.+.|.+ .+..++.+++++++..++ ....+++.||+++.+|+
T Consensus 190 -------------------------------~~~l~~~L~~--~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~ 236 (847)
T PRK14989 190 -------------------------------GEQLRRKIES--MGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDF 236 (847)
T ss_pred -------------------------------HHHHHHHHHH--CCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCE
Confidence 0122233322 133477888888887543 34567888999999999
Q ss_pred EEEecCCCchh
Q 005770 236 LIGADGIWSKV 246 (678)
Q Consensus 236 vVgADG~~S~V 246 (678)
||.|-|.....
T Consensus 237 Vv~A~G~rPn~ 247 (847)
T PRK14989 237 IVFSTGIRPQD 247 (847)
T ss_pred EEECCCcccCc
Confidence 99999986543
No 293
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.96 E-value=0.00087 Score=76.15 Aligned_cols=36 Identities=39% Similarity=0.696 Sum_probs=33.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
.++||||||+|++|+++|+.++++|.+|+|+||.+.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~ 45 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH 45 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 468999999999999999999999999999999754
No 294
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.96 E-value=0.0097 Score=66.52 Aligned_cols=97 Identities=21% Similarity=0.296 Sum_probs=67.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
.+|+|||||+.|+.+|..|++.|.+|+|+++.. .... +.+ .+
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l~~---------~d~-----------~~----------------- 224 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-PLRG---------FDR-----------QC----------------- 224 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-cccc---------CCH-----------HH-----------------
Confidence 479999999999999999999999999998631 1000 000 00
Q ss_pred eeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEE
Q 005770 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLI 237 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vV 237 (678)
...+.+.|.+ ....++.++++..++..++.+.+.+.+|+++.+|.||
T Consensus 225 -------------------------------~~~l~~~l~~--~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl 271 (499)
T PTZ00052 225 -------------------------------SEKVVEYMKE--QGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVL 271 (499)
T ss_pred -------------------------------HHHHHHHHHH--cCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEE
Confidence 0112222222 1234677888888876666677888888889999999
Q ss_pred EecCCCch
Q 005770 238 GADGIWSK 245 (678)
Q Consensus 238 gADG~~S~ 245 (678)
.|-|....
T Consensus 272 ~a~G~~pn 279 (499)
T PTZ00052 272 YATGRKPD 279 (499)
T ss_pred EeeCCCCC
Confidence 99997654
No 295
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.95 E-value=0.0034 Score=71.49 Aligned_cols=81 Identities=23% Similarity=0.390 Sum_probs=66.5
Q ss_pred CCCcEEeCCCCCCCCCcceEEeCCCcccccceEEEEeCCE--EEEEeCCCCCceEecCCCCceeecCCCCcEEeCCCCEE
Q 005770 566 ENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGA--FYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTI 643 (678)
Q Consensus 566 ~~~~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~~~~--~~i~Dl~S~nGt~v~~~~~~~~~~~~~~~~~l~~gd~i 643 (678)
....++|||.+.... .||+|....|--+||.|..+++. ++|.-. ----|||||+ .+. ++..|+.||+|
T Consensus 475 keG~TrVG~~~a~~~--~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~-e~aetyVNGk-----~v~--ep~qL~~GdRi 544 (1221)
T KOG0245|consen 475 KEGETRVGREDASSR--QDIVLSGQLIREQHCSIRNEGGNDVVTLEPC-EDAETYVNGK-----LVT--EPTQLRSGDRI 544 (1221)
T ss_pred ccCceecCCCCcccC--CceEecchhhhhhceEEEecCCCceEEeccC-CccceeEccE-----EcC--CcceeccCCEE
Confidence 355789999877544 89999999999999999999776 666653 3455999998 765 68899999999
Q ss_pred EECCCceEEEEEEec
Q 005770 644 EFGSDKKAIFRVKVI 658 (678)
Q Consensus 644 ~~g~~~~~~~~~~~~ 658 (678)
.+|... .|+|..+
T Consensus 545 ilG~~H--~frfn~P 557 (1221)
T KOG0245|consen 545 ILGGNH--VFRFNHP 557 (1221)
T ss_pred EEcCce--eEEecCH
Confidence 999975 5888766
No 296
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.94 E-value=0.0008 Score=74.61 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=31.0
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
+|+|||||++||++|..|+++|++|+|+|+++.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~ 33 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSF 33 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 589999999999999999999999999999764
No 297
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.94 E-value=0.00085 Score=74.65 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=32.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~ 112 (678)
+||+|||+||+|+++|..|++.|++|++||+....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~ 35 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAAD 35 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCcc
Confidence 69999999999999999999999999999998654
No 298
>PLN02676 polyamine oxidase
Probab=96.92 E-value=0.00097 Score=74.09 Aligned_cols=56 Identities=20% Similarity=0.155 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcC--------CceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCCCch
Q 005770 190 MTLQQILAKAVG--------DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (678)
Q Consensus 190 ~~l~~~L~~~~~--------~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~~S~ 245 (678)
..|-+.|.+.+. ...|+++++|++|++++++|+|++.+|++++||.||.|...+..
T Consensus 224 ~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vL 287 (487)
T PLN02676 224 ESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVL 287 (487)
T ss_pred HHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHh
Confidence 345555665441 13589999999999999999999999999999999999986543
No 299
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.90 E-value=0.0012 Score=73.18 Aligned_cols=36 Identities=33% Similarity=0.515 Sum_probs=33.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...+|+||||||+|+++|..|+++|++|+|+|+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 457999999999999999999999999999998753
No 300
>PRK02106 choline dehydrogenase; Validated
Probab=96.90 E-value=0.001 Score=75.63 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=33.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHH-cCCcEEEEeccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKR-KGFEVLVFEKDM 110 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~-~g~~~~~~e~~~ 110 (678)
...+|++|||+|++|+.+|..|++ .|++|+|+|+.+
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 456899999999999999999999 799999999984
No 301
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.003 Score=66.49 Aligned_cols=150 Identities=22% Similarity=0.288 Sum_probs=80.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccc------cCCcccccceeeChhHHHHHHhcChhHHHHHHHhc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI------RGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAG 148 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~------~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~ 148 (678)
...+||+|||||-||+.+|.+.+|.|-+.+|+-.+-... ...|....++ -++-.+.|+ |+-..+-+..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~-----LmrEVDALd-Gl~~rvcD~s 99 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGH-----LMREVDALD-GLCSRVCDQS 99 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccce-----eeeeehhhc-chHhhhhhhh
Confidence 567999999999999999999999999999998754321 0111110111 112233333 4433333322
Q ss_pred cccccceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCC---ceEEeCCeEEEEEE-e-CC----
Q 005770 149 CVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKD-H-GD---- 219 (678)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~~~~-~-~~---- 219 (678)
.+.... .+...|..+- ..-..++|....+.+.+.+.. -.++ ...|.++.- + ++
T Consensus 100 ~vq~k~----LNrs~GPAVw-------------g~RAQiDR~lYkk~MQkei~st~nL~ir-e~~V~dliv~~~~~~~~~ 161 (679)
T KOG2311|consen 100 GVQYKV----LNRSKGPAVW-------------GLRAQIDRKLYKKNMQKEISSTPNLEIR-EGAVADLIVEDPDDGHCV 161 (679)
T ss_pred hhhHHH----hhccCCCccc-------------ChHHhhhHHHHHHHHHHHhccCCcchhh-hhhhhheeeccCCCCceE
Confidence 111111 1111111000 001245666666666665532 2243 345555532 2 22
Q ss_pred eEEEEEcCCcEEeccEEEEecCCCchhhhhh
Q 005770 220 KVSVVLENGQCYAGDLLIGADGIWSKVRKNL 250 (678)
Q Consensus 220 ~v~v~~~dg~~i~a~~vVgADG~~S~VR~~l 250 (678)
..-|.+.||+.+.|+-||...|.. +|.++
T Consensus 162 ~~gV~l~dgt~v~a~~VilTTGTF--L~~~I 190 (679)
T KOG2311|consen 162 VSGVVLVDGTVVYAESVILTTGTF--LRGQI 190 (679)
T ss_pred EEEEEEecCcEeccceEEEeeccc--eeeEE
Confidence 123667899999999999999964 44443
No 302
>PRK07846 mycothione reductase; Reviewed
Probab=96.85 E-value=0.002 Score=71.01 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=27.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
++||+||||||+|..+|.. ..|.+|.|+|+.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~ 31 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG 31 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC
Confidence 3799999999999988865 469999999985
No 303
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.84 E-value=0.012 Score=65.15 Aligned_cols=34 Identities=38% Similarity=0.559 Sum_probs=31.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
..+|+|||||+.|+.+|..|++.|.+|+++++.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4689999999999999999999999999999863
No 304
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.83 E-value=0.0016 Score=75.06 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=33.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...+|+||||||+||++|..|++.|++|+|+|+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 467899999999999999999999999999998753
No 305
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.81 E-value=0.0017 Score=69.28 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=32.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...+|+|||||++|+.+|..|++.|++|+++|+.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 346899999999999999999999999999998753
No 306
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.81 E-value=0.0012 Score=73.26 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCcEEEEecc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKD 109 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~-g~~~~~~e~~ 109 (678)
.++||+||||||+|..+|+.+++. |.+|+|||+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 468999999999999999999997 9999999974
No 307
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.80 E-value=0.0015 Score=65.56 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=34.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~ 112 (678)
+...||+|||+|.+||.+|+.|+.+|.+|+|+|+....
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq 40 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ 40 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccc
Confidence 45689999999999999999999999999999987543
No 308
>PLN02612 phytoene desaturase
Probab=96.77 E-value=0.0016 Score=73.73 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=33.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
....+|+|||||++||++|..|+++|++|+|+|++.
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~ 126 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARD 126 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 345789999999999999999999999999999875
No 309
>PTZ00058 glutathione reductase; Provisional
Probab=96.76 E-value=0.018 Score=64.94 Aligned_cols=100 Identities=21% Similarity=0.281 Sum_probs=67.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||..|+.+|..|++.|.+|+|+|+.+.... .++..+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~--------------------~~d~~i---------------- 280 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR--------------------KFDETI---------------- 280 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc--------------------cCCHHH----------------
Confidence 46899999999999999999999999999998632110 000000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCC-eEEEEEcCC-cEEecc
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGD-KVSVVLENG-QCYAGD 234 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~-~v~v~~~dg-~~i~a~ 234 (678)
...+.+.|.+ .+..++.++++.+++.+++ ++.+.+.++ +++.+|
T Consensus 281 --------------------------------~~~l~~~L~~--~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD 326 (561)
T PTZ00058 281 --------------------------------INELENDMKK--NNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFD 326 (561)
T ss_pred --------------------------------HHHHHHHHHH--CCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECC
Confidence 0112223332 2334777888888876543 466665554 579999
Q ss_pred EEEEecCCCchh
Q 005770 235 LLIGADGIWSKV 246 (678)
Q Consensus 235 ~vVgADG~~S~V 246 (678)
.||.|-|....+
T Consensus 327 ~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 327 YVIYCVGRSPNT 338 (561)
T ss_pred EEEECcCCCCCc
Confidence 999999976443
No 310
>PRK14694 putative mercuric reductase; Provisional
Probab=96.73 E-value=0.018 Score=63.92 Aligned_cols=98 Identities=19% Similarity=0.258 Sum_probs=66.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||+|++|+.+|..|++.|.+|+++++.. .. . ..+..+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~-~l------------~--------~~~~~~---------------- 220 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSR-VL------------S--------QEDPAV---------------- 220 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC-CC------------C--------CCCHHH----------------
Confidence 3589999999999999999999999999998631 00 0 000000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~v 236 (678)
...+.+.|.+ .+..++.++++.+++.+++.+.+.+.++ ++.+|+|
T Consensus 221 --------------------------------~~~l~~~l~~--~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~v 265 (468)
T PRK14694 221 --------------------------------GEAIEAAFRR--EGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQL 265 (468)
T ss_pred --------------------------------HHHHHHHHHh--CCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEE
Confidence 0112223322 2334777888999887766666666544 6999999
Q ss_pred EEecCCCchh
Q 005770 237 IGADGIWSKV 246 (678)
Q Consensus 237 VgADG~~S~V 246 (678)
|.|-|.....
T Consensus 266 i~a~G~~pn~ 275 (468)
T PRK14694 266 LVATGRTPNT 275 (468)
T ss_pred EEccCCCCCc
Confidence 9999987644
No 311
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.73 E-value=0.017 Score=64.21 Aligned_cols=96 Identities=19% Similarity=0.121 Sum_probs=65.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
.+|+|||||+.|+.+|..|++.|.+|+|+++. ...+ .++..+
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~--------------------~~d~~~----------------- 222 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLR--------------------GFDQDC----------------- 222 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-cccc--------------------ccCHHH-----------------
Confidence 47999999999999999999999999999863 1100 000000
Q ss_pred eeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCC---cEEecc
Q 005770 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG---QCYAGD 234 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg---~~i~a~ 234 (678)
+..+.+.|.+ .+..++.++.++.++..++.+.+++.++ +++.+|
T Consensus 223 -------------------------------~~~l~~~L~~--~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D 269 (484)
T TIGR01438 223 -------------------------------ANKVGEHMEE--HGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYD 269 (484)
T ss_pred -------------------------------HHHHHHHHHH--cCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeC
Confidence 0122233322 1344777888888877666777777665 379999
Q ss_pred EEEEecCCCc
Q 005770 235 LLIGADGIWS 244 (678)
Q Consensus 235 ~vVgADG~~S 244 (678)
.||.|-|...
T Consensus 270 ~vl~a~G~~p 279 (484)
T TIGR01438 270 TVLLAIGRDA 279 (484)
T ss_pred EEEEEecCCc
Confidence 9999999653
No 312
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.72 E-value=0.0017 Score=72.77 Aligned_cols=39 Identities=28% Similarity=0.462 Sum_probs=35.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~ 112 (678)
...++||+|||||.|||.+|+.++..|++|+|+||....
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~ 41 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK 41 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccC
Confidence 356789999999999999999999999999999997654
No 313
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.70 E-value=0.0065 Score=71.66 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=33.2
Q ss_pred CceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCCCch
Q 005770 202 DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (678)
Q Consensus 202 ~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~~S~ 245 (678)
+..++.+++|++++.+.. +|++.+|+++.+|.||.|.|+...
T Consensus 68 gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 68 GITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred CCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCCcC
Confidence 345778999999876543 566778889999999999998643
No 314
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.67 E-value=0.0022 Score=71.28 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=32.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...+|+||||||+|+++|..|+++|++|+|+|+.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 346999999999999999999999999999998753
No 315
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.67 E-value=0.0025 Score=72.42 Aligned_cols=37 Identities=35% Similarity=0.536 Sum_probs=33.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
....+|+||||||+||++|..|++.|++|+|+|+.+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~ 171 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPK 171 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3457899999999999999999999999999998753
No 316
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.65 E-value=0.002 Score=70.28 Aligned_cols=36 Identities=33% Similarity=0.443 Sum_probs=33.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...+|+||||||+||++|..|++.|+.|+++|+.+.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 347899999999999999999999999999999754
No 317
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.63 E-value=0.016 Score=62.86 Aligned_cols=99 Identities=26% Similarity=0.308 Sum_probs=68.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||+|++|+.+|..|+++|++|+++|+.+..... +. . . .+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~---------~~----~--~----~~---------------- 180 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ---------LL----D--P----EV---------------- 180 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh---------hh----h--H----HH----------------
Confidence 478999999999999999999999999999987432100 00 0 0 00
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEE---EEEcCCcEEec
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVS---VVLENGQCYAG 233 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~---v~~~dg~~i~a 233 (678)
...+.+.|.+. + ..++.+.++..++...+... +...+++.+.+
T Consensus 181 --------------------------------~~~~~~~l~~~-g-i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (415)
T COG0446 181 --------------------------------AEELAELLEKY-G-VELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKA 226 (415)
T ss_pred --------------------------------HHHHHHHHHHC-C-cEEEeCCceEEEEcccCcceeeEEEEeCCcEEEe
Confidence 01122222221 2 33667888888887766544 56778889999
Q ss_pred cEEEEecCCCc
Q 005770 234 DLLIGADGIWS 244 (678)
Q Consensus 234 ~~vVgADG~~S 244 (678)
|+++.+-|..-
T Consensus 227 d~~~~~~g~~p 237 (415)
T COG0446 227 DLVIIGPGERP 237 (415)
T ss_pred eEEEEeecccc
Confidence 99999998765
No 318
>PRK14727 putative mercuric reductase; Provisional
Probab=96.62 E-value=0.023 Score=63.21 Aligned_cols=98 Identities=15% Similarity=0.157 Sum_probs=67.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhccccccceee
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~~ 157 (678)
.+|+|||||+.|+.+|..|++.|.+|+|+++.. .... ..+ .+
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~l~~---------~d~-----------~~----------------- 230 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST-LLFR---------EDP-----------LL----------------- 230 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-CCCc---------chH-----------HH-----------------
Confidence 589999999999999999999999999998641 0000 000 00
Q ss_pred eeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEE
Q 005770 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLI 237 (678)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vV 237 (678)
...+.+.|.+ .+..++.++++++++.+++++.+...++ ++.+|.||
T Consensus 231 -------------------------------~~~l~~~L~~--~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~Vl 276 (479)
T PRK14727 231 -------------------------------GETLTACFEK--EGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLL 276 (479)
T ss_pred -------------------------------HHHHHHHHHh--CCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEE
Confidence 0112222222 1234777889999987777777776665 58999999
Q ss_pred EecCCCchhh
Q 005770 238 GADGIWSKVR 247 (678)
Q Consensus 238 gADG~~S~VR 247 (678)
.|-|......
T Consensus 277 vA~G~~pn~~ 286 (479)
T PRK14727 277 ISTGRHANTH 286 (479)
T ss_pred EccCCCCCcc
Confidence 9999876543
No 319
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.59 E-value=0.023 Score=62.58 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=30.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
..+|+|||||++|+.+|..|++.|.+|+++++.
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~ 181 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLE 181 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCC
Confidence 368999999999999999999999999999875
No 320
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.57 E-value=0.022 Score=62.32 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=29.2
Q ss_pred ceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCCCc
Q 005770 203 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 244 (678)
Q Consensus 203 ~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~~S 244 (678)
..++.+++|+++.. +. +++++|+++.+|++|-|-|...
T Consensus 243 V~v~~~~~v~~v~~--~~--v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 243 VDIRTKTAVKEVLD--KE--VVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred CEEEeCCeEEEEeC--CE--EEECCCCEEEccEEEEccCCCC
Confidence 44777888888864 33 5678899999999999999543
No 321
>PRK13748 putative mercuric reductase; Provisional
Probab=96.45 E-value=0.031 Score=63.68 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=67.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
..+|+|||||+.|+.+|..|++.|.+|+|+++... +. ..+..+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~-------------l~--------~~d~~~---------------- 312 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTL-------------FF--------REDPAI---------------- 312 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc-------------cc--------ccCHHH----------------
Confidence 35899999999999999999999999999987410 00 000000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~v 236 (678)
...+.+.|.+ .+..++.++++++++.+++.+.+.+.++ ++.+|.|
T Consensus 313 --------------------------------~~~l~~~l~~--~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~v 357 (561)
T PRK13748 313 --------------------------------GEAVTAAFRA--EGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKL 357 (561)
T ss_pred --------------------------------HHHHHHHHHH--CCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEE
Confidence 0112222322 2334777888888887766776766555 6999999
Q ss_pred EEecCCCchh
Q 005770 237 IGADGIWSKV 246 (678)
Q Consensus 237 VgADG~~S~V 246 (678)
|.|-|.....
T Consensus 358 i~a~G~~pn~ 367 (561)
T PRK13748 358 LVATGRAPNT 367 (561)
T ss_pred EEccCCCcCC
Confidence 9999976544
No 322
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.39 E-value=0.22 Score=52.37 Aligned_cols=61 Identities=25% Similarity=0.389 Sum_probs=48.0
Q ss_pred EEEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEE-EEEcCCcEEeccEEEEecCCCch
Q 005770 184 TRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSK 245 (678)
Q Consensus 184 ~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~-v~~~dg~~i~a~~vVgADG~~S~ 245 (678)
...++-..|...|.+.+. +..++.+++|++++.+++++. |...+| +++||.||.|.|++|.
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 346778888888887763 346888999999998877764 555555 7999999999999875
No 323
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.33 E-value=0.014 Score=58.72 Aligned_cols=33 Identities=36% Similarity=0.499 Sum_probs=29.9
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
.|+|||+|.|||+++..+-..|-.|+|+|++..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s 43 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGS 43 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCC
Confidence 699999999999999999988777999999753
No 324
>PRK13984 putative oxidoreductase; Provisional
Probab=96.33 E-value=0.0046 Score=70.96 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=33.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
....+|+|||+||+|+++|..|+++|++|+|+|+.+.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~ 317 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK 317 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3467899999999999999999999999999998753
No 325
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.32 E-value=0.0033 Score=63.81 Aligned_cols=34 Identities=38% Similarity=0.587 Sum_probs=30.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
...+|+|||+|++||++|..|+++ ++|+|+|.+.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~ 40 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADR 40 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccc
Confidence 457899999999999999999987 8999999864
No 326
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=96.31 E-value=0.016 Score=62.80 Aligned_cols=86 Identities=8% Similarity=0.135 Sum_probs=60.3
Q ss_pred EEecCCCCCcCcceeeecccCCCcEEeC-CCCCCCCCcceEEeCCCcccccceEEEEeCCEEEEEeCCCCCceEecCCCC
Q 005770 546 LVPSGSENVVSQPIYLSVSHENEPYLIG-SESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEG 624 (678)
Q Consensus 546 Ll~~~~~~~~~~~l~~~~~~~~~~~~iG-R~~~~~~~~~~~~~~~~~vSr~Ha~i~~~~~~~~i~Dl~S~nGt~v~~~~~ 624 (678)
|-..+|.. .+..+.+. ...++|| ++.+ |||++.|+.||++|+.|..+..++.+.| +..++++||.
T Consensus 3 lrvl~G~~-~G~~~~L~----~g~~~iG~~~~~-----~di~L~d~~~~~~h~~l~v~~~~~~l~~--~~~~~~~~g~-- 68 (410)
T TIGR02500 3 LRVLSGPH-RGAELPLP----EGNLVLGTDAAD-----CDIVLSDGGIAAVHVSLHVRLEGVTLAG--AVEPAWEEGG-- 68 (410)
T ss_pred EEEecCCC-CCcEEECC----CCceEeccCCCC-----cEEEeCCCCccchheEEEEcCceEEEec--CCcceeECCc--
Confidence 33444443 33444444 5569999 8878 9999999999999999999999998886 5778999982
Q ss_pred ceeecCCCCcEEeCCCCEEEECCC
Q 005770 625 RRYRVSSNFPARFRPSDTIEFGSD 648 (678)
Q Consensus 625 ~~~~~~~~~~~~l~~gd~i~~g~~ 648 (678)
++.......|..+-.+.+|..
T Consensus 69 ---~~~~~~g~~l~~~~~l~~g~~ 89 (410)
T TIGR02500 69 ---VLPDEEGTPLPSGTPLLVAGV 89 (410)
T ss_pred ---ccccCCCCccCCCCceeccee
Confidence 222223344566666666644
No 327
>PLN02546 glutathione reductase
Probab=96.31 E-value=0.045 Score=61.75 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=30.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
..+|+|||||+.|+.+|..|++.|.+|+|+++.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~ 284 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQ 284 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEec
Confidence 468999999999999999999999999999976
No 328
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.30 E-value=0.042 Score=63.01 Aligned_cols=33 Identities=33% Similarity=0.297 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
.+|+|||||++|+.+|..|++.|.+|+|+|+.+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 579999999999999999999999999999863
No 329
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.28 E-value=0.019 Score=61.21 Aligned_cols=35 Identities=37% Similarity=0.552 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g--~~~~~~e~~~ 110 (678)
...+|+|||||-+|+.+|..|.++- .++++||++.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~ 38 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRD 38 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCC
Confidence 3568999999999999999999974 8999999984
No 330
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.27 E-value=0.027 Score=59.70 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=36.2
Q ss_pred ceEEeCCeEEEEEEeCCe-EEEEEcCCcEEeccEEEEecCCCc
Q 005770 203 EIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWS 244 (678)
Q Consensus 203 ~~i~~~~~v~~~~~~~~~-v~v~~~dg~~i~a~~vVgADG~~S 244 (678)
..++|+++|.+++..++. ..+.+.+|+++.+|+||.|=|..+
T Consensus 188 ~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 188 GEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred cEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch
Confidence 468999999999988875 457778899999999999999865
No 331
>PLN03000 amine oxidase
Probab=96.24 E-value=0.0055 Score=71.15 Aligned_cols=36 Identities=33% Similarity=0.520 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...+|+|||||++|+.+|..|++.|++|+|+|++..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~r 218 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKR 218 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCc
Confidence 458999999999999999999999999999998753
No 332
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.23 E-value=0.051 Score=58.59 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=51.4
Q ss_pred EEeCHHHHHHHHHHhcCC-ceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCCCch
Q 005770 185 RVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (678)
Q Consensus 185 ~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~~S~ 245 (678)
..++...+...|.+.+.. ..++++++|++++.+++++.+++.+|++++||.||.|.|.++.
T Consensus 130 g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 467778888888877643 4588899999999888888898888888999999999999874
No 333
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.12 E-value=0.0049 Score=69.36 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=34.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
+..++|++|||+|.+|.++|..|+..|++|+|+|+..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 3467999999999999999999999999999999874
No 334
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.12 E-value=0.0067 Score=63.38 Aligned_cols=36 Identities=36% Similarity=0.521 Sum_probs=31.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEE--EEeccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVL--VFEKDM 110 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~--~~e~~~ 110 (678)
...++|+|||||++||++|+.|++++.+|+ |+|+.+
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~ 46 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP 46 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC
Confidence 445789999999999999999999988765 599864
No 335
>PLN02976 amine oxidase
Probab=96.09 E-value=0.0068 Score=73.01 Aligned_cols=35 Identities=37% Similarity=0.598 Sum_probs=32.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
...+|+|||||++|+++|..|++.|++|+|+|+..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~ 726 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARS 726 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeecc
Confidence 45789999999999999999999999999999864
No 336
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.09 E-value=0.039 Score=62.03 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=30.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
..+|+|||||+.|+.+|..|++.|.+|+++++.
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~ 384 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFA 384 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeC
Confidence 468999999999999999999999999999865
No 337
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.08 E-value=0.0046 Score=69.79 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=30.3
Q ss_pred eEEEECCCHHHHHHHHHHHHcC-CcEEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKG-FEVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g-~~~~~~e~~~ 110 (678)
|++|||||.+|+.+|..|++.| ++|+|+|+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 7999999975
No 338
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.03 E-value=0.0079 Score=61.86 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc--CCcEEEEecccccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAI 113 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~--g~~~~~~e~~~~~~ 113 (678)
....|+|||+||||+.+|..|.++ ++.|.|+|+.+.|.
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 345899999999999999988874 78999999987663
No 339
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.02 E-value=0.023 Score=60.59 Aligned_cols=43 Identities=26% Similarity=0.378 Sum_probs=32.0
Q ss_pred ceEEeCCeEEEEEEeCCeEEEEEcCCc-EEeccEEEEecCCC-chhhhh
Q 005770 203 EIILNESNVIDFKDHGDKVSVVLENGQ-CYAGDLLIGADGIW-SKVRKN 249 (678)
Q Consensus 203 ~~i~~~~~v~~~~~~~~~v~v~~~dg~-~i~a~~vVgADG~~-S~VR~~ 249 (678)
..++.++.|++++.+. |++++|+ +|.++.+|=|-|.. |++-+.
T Consensus 224 V~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 224 VEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPLLKD 268 (405)
T ss_pred CEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCcCChhhhh
Confidence 3478899999997654 6677777 59999999999964 444443
No 340
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.01 E-value=0.019 Score=60.00 Aligned_cols=153 Identities=19% Similarity=0.190 Sum_probs=88.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcC-CcEEEEecccccccCCcccccceeeChhHHHH--HHhcChhHHHHHHHhccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAA--LEAIDLDVAEEVMRAGCV 150 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g-~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~--L~~l~~gl~~~~~~~~~~ 150 (678)
++..+|++.||-||.-|.+|+.|..++ +++..+||.+......| +.+...++++ |+.| +.-..+.
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpG-----mllegstlQv~FlkDL-------VTl~~PT 69 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPG-----MLLEGSTLQVPFLKDL-------VTLVDPT 69 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCC-----cccCCccccccchhhh-------ccccCCC
Confidence 456799999999999999999999876 78999999987766554 3344333332 3332 1000000
Q ss_pred cccceeeeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCC-ceEEeCCeEEEEEEe-CCe-EE--EEE
Q 005770 151 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD-EIILNESNVIDFKDH-GDK-VS--VVL 225 (678)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~~~~~-~~~-v~--v~~ 225 (678)
....+..+.. ..++ +..|=. +. ...+.|.++.+.+.=.++. ..++|+.+|++|..- .+. +. +..
T Consensus 70 s~ySFLNYL~-~h~R-Ly~Fl~--------~e-~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t 138 (436)
T COG3486 70 SPYSFLNYLH-EHGR-LYEFLN--------YE-TFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVT 138 (436)
T ss_pred CchHHHHHHH-Hcch-Hhhhhh--------hh-cccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEc
Confidence 0000000000 0000 000000 00 2567888888877655432 348899999977322 222 22 445
Q ss_pred cCCcEEeccEEEEecCCCchhhhh
Q 005770 226 ENGQCYAGDLLIGADGIWSKVRKN 249 (678)
Q Consensus 226 ~dg~~i~a~~vVgADG~~S~VR~~ 249 (678)
.++++.+|+-||..-|..-.+-..
T Consensus 139 ~~~~~y~ar~lVlg~G~~P~IP~~ 162 (436)
T COG3486 139 ANGTVYRARNLVLGVGTQPYIPPC 162 (436)
T ss_pred CCCcEEEeeeEEEccCCCcCCChH
Confidence 566788999988888876554433
No 341
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.99 E-value=0.008 Score=69.20 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=33.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
.....|+|||.||+||++|-.|-+.|+.|+|+||...
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence 3457899999999999999999999999999999753
No 342
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=95.95 E-value=0.0096 Score=63.26 Aligned_cols=36 Identities=33% Similarity=0.594 Sum_probs=30.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEeccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~ 110 (678)
....+|+|||||+|||++|..|-..|+ +|+|+|...
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~d 55 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASD 55 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEecc
Confidence 344589999999999999999997665 799999764
No 343
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.93 E-value=0.007 Score=61.02 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=32.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
....|-|||||.||..+|+.++++|++|.|+|-++.
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 345799999999999999999999999999997653
No 344
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=95.91 E-value=0.0068 Score=61.27 Aligned_cols=36 Identities=31% Similarity=0.505 Sum_probs=32.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc----CCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~----g~~~~~~e~~~~ 111 (678)
...||+|||||..|++.|..|..+ |++|+|+||+..
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 468999999999999999999764 799999999864
No 345
>PLN02785 Protein HOTHEAD
Probab=95.90 E-value=0.0098 Score=67.46 Aligned_cols=36 Identities=28% Similarity=0.511 Sum_probs=32.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...+|++|||||.+|+.+|..|++ +.+|+|+|+...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 346999999999999999999999 699999999863
No 346
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.72 E-value=0.11 Score=53.64 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=30.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
..+|+|||+|+.|+-+|..|++.|.+|+++++.
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~ 173 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR 173 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeC
Confidence 468999999999999999999999999999875
No 347
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=95.69 E-value=0.032 Score=59.55 Aligned_cols=85 Identities=15% Similarity=0.259 Sum_probs=68.6
Q ss_pred cCCCcEEeCCCCCCCCCcceEEe--CCCcccccceEEEEe-CCEEEEEeCCCCCceEecCCCCceeecCCCCcEEeCCCC
Q 005770 565 HENEPYLIGSESHEDFSRTSIVI--PSAQVSKMHARISYK-DGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSD 641 (678)
Q Consensus 565 ~~~~~~~iGR~~~~~~~~~~~~~--~~~~vSr~Ha~i~~~-~~~~~i~Dl~S~nGt~v~~~~~~~~~~~~~~~~~l~~gd 641 (678)
..+..+++||+.....++.|+-. +...|||+.+.|... +|.|+|..+| +--.||||. .+.+|+.+.|+...
T Consensus 445 mrk~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlG-K~~I~vng~-----~l~~gq~~~L~~nc 518 (547)
T KOG2293|consen 445 MRKKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLG-KRSILVNGG-----ELDRGQKVILKNNC 518 (547)
T ss_pred hcCcceEeeccCCCcceeeeccccCccceeeccceeEEeccCCcEEeccCc-ceeEEeCCc-----cccCCceEEeccCc
Confidence 34778999999876443333333 556899999999987 7789999996 778999999 99999999999999
Q ss_pred EEEECCCceEEEEEEec
Q 005770 642 TIEFGSDKKAIFRVKVI 658 (678)
Q Consensus 642 ~i~~g~~~~~~~~~~~~ 658 (678)
+|+|-.- .|.|++-
T Consensus 519 lveIrg~---~FiF~~N 532 (547)
T KOG2293|consen 519 LVEIRGL---RFIFEIN 532 (547)
T ss_pred EEEEccc---eEEEeec
Confidence 9999876 4777754
No 348
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.062 Score=51.35 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=29.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
.+|+|||.|||+-++|+.+++..++-+|+|--
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~ 40 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGM 40 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeee
Confidence 48999999999999999999999999999954
No 349
>PRK10262 thioredoxin reductase; Provisional
Probab=95.61 E-value=0.11 Score=54.42 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
..+|+|||+|..|+.+|..|++.|.+|+++++.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 4689999999999999999999999999999863
No 350
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=95.28 E-value=0.083 Score=54.65 Aligned_cols=101 Identities=26% Similarity=0.259 Sum_probs=72.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
+...+|||||..||.++..-.+.|-+|+++|-.+. ++..+..++
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~------------------------i~~~mD~Ei------------ 254 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQ------------------------IGGVMDGEI------------ 254 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhh------------------------hccccCHHH------------
Confidence 46799999999999999999999999999995421 100000011
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeCC-eEEEEEcC---C--cE
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGD-KVSVVLEN---G--QC 230 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~-~v~v~~~d---g--~~ 230 (678)
...+++.|.+ ....++.+++|++.+.+++ .+.+++.+ + ++
T Consensus 255 --------------------------------sk~~qr~L~k--QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~t 300 (506)
T KOG1335|consen 255 --------------------------------SKAFQRVLQK--QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKET 300 (506)
T ss_pred --------------------------------HHHHHHHHHh--cCceeEeccEEEEeeccCCCceEEEEEecCCCceeE
Confidence 1234445544 3445788999999998887 67777765 3 37
Q ss_pred EeccEEEEecCCCchhh
Q 005770 231 YAGDLLIGADGIWSKVR 247 (678)
Q Consensus 231 i~a~~vVgADG~~S~VR 247 (678)
++||.+..|-|++-..-
T Consensus 301 le~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 301 LECDVLLVSIGRRPFTE 317 (506)
T ss_pred EEeeEEEEEccCccccc
Confidence 99999999999875443
No 351
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.26 E-value=0.12 Score=58.11 Aligned_cols=33 Identities=30% Similarity=0.295 Sum_probs=30.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
..+|+|||||..|+.+|..|+..|.+|+|+++.
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~ 383 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFA 383 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEEC
Confidence 468999999999999999999999999999876
No 352
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.19 E-value=0.01 Score=63.68 Aligned_cols=39 Identities=28% Similarity=0.461 Sum_probs=35.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~ 112 (678)
...++||+|||||-+|.-+|+-.+-+|++|.|+|+....
T Consensus 64 ~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~ 102 (680)
T KOG0042|consen 64 STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFA 102 (680)
T ss_pred cCCcccEEEECCCccCcceeehhhcccceeEEEeccccc
Confidence 445699999999999999999999999999999998643
No 353
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.18 E-value=0.024 Score=52.74 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=30.0
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
+|.|+|||..|.++|..|+++|++|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999863
No 354
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.02 E-value=0.022 Score=54.50 Aligned_cols=34 Identities=35% Similarity=0.460 Sum_probs=27.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
++|.|||.|-+||.+|..||+.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998754
No 355
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.98 E-value=0.03 Score=53.29 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=28.6
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
+|.|||+|..|...|..+++.|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999998743
No 356
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.91 E-value=0.22 Score=53.35 Aligned_cols=100 Identities=17% Similarity=0.193 Sum_probs=69.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccccccCCcccccceeeChhHHHHHHhcChhHHHHHHHhcccccccee
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~gl~~~~~~~~~~~~~~~~ 156 (678)
...|++||+|-.|+.+|..|.-.+++|+++++.+.+.. + + ++..+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~-------------~---l---f~~~i---------------- 257 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP-------------R---L---FGPSI---------------- 257 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh-------------h---h---hhHHH----------------
Confidence 46699999999999999999999999999998643211 0 0 00000
Q ss_pred eeeecCCCceeeeccCCCcccccCCCeEEEeCHHHHHHHHHHhcCCceEEeCCeEEEEEEeC--CeEEEEEcCCcEEecc
Q 005770 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHG--DKVSVVLENGQCYAGD 234 (678)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~--~~v~v~~~dg~~i~a~ 234 (678)
+..++..|.+ ....+..++.+.+++.+. ....|.+.||+++.||
T Consensus 258 --------------------------------~~~~~~y~e~--kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~ad 303 (478)
T KOG1336|consen 258 --------------------------------GQFYEDYYEN--KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEAD 303 (478)
T ss_pred --------------------------------HHHHHHHHHh--cCeEEEEecceeecccCCCCcEEEEEeccCCEeccC
Confidence 1222333332 223467788888887665 3356889999999999
Q ss_pred EEEEecCCCch
Q 005770 235 LLIGADGIWSK 245 (678)
Q Consensus 235 ~vVgADG~~S~ 245 (678)
+||..-|+.+.
T Consensus 304 lvv~GiG~~p~ 314 (478)
T KOG1336|consen 304 LVVVGIGIKPN 314 (478)
T ss_pred eEEEeeccccc
Confidence 99999998653
No 357
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.83 E-value=0.25 Score=52.82 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=28.7
Q ss_pred ceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCCCc
Q 005770 203 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 244 (678)
Q Consensus 203 ~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~~S 244 (678)
..++.++++++++.+ .+++.+|+++.+|+||.|-|...
T Consensus 206 V~v~~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 206 IEVHEGAPVTRGPDG----ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred CEEEeCCeeEEEcCC----eEEeCCCCEEecCEEEEccCCCh
Confidence 346678888877532 46677888999999999999653
No 358
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=94.77 E-value=0.025 Score=56.83 Aligned_cols=37 Identities=38% Similarity=0.567 Sum_probs=30.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHc-CC-cEEEEeccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRK-GF-EVLVFEKDM 110 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~-g~-~~~~~e~~~ 110 (678)
..++++|+|||||-+|+..|..+.++ |- +|.|+|...
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 34679999999999999999999876 33 788888764
No 359
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.66 E-value=0.04 Score=54.46 Aligned_cols=35 Identities=23% Similarity=0.476 Sum_probs=32.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~ 112 (678)
++++|||+|..|..+|..|.+.|+.|+++|+++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~ 35 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER 35 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH
Confidence 47999999999999999999999999999998654
No 360
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=94.41 E-value=0.088 Score=59.69 Aligned_cols=100 Identities=22% Similarity=0.277 Sum_probs=76.1
Q ss_pred ceEEEecCCCCCcC-cceeeecccCCCcEEeCCCCCCCCCcceEEeCCCcccccceEEEEeCCEEEEEeCCCCCceEecC
Q 005770 543 EWFLVPSGSENVVS-QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTD 621 (678)
Q Consensus 543 ~~~Ll~~~~~~~~~-~~l~~~~~~~~~~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~~~~~~i~Dl~S~nGt~v~~ 621 (678)
..+|+......-++ ..+.+. ...+-+|.+...+ +.|.|..+.|-.+||.|..-+|.++|+-+.--.-|||||
T Consensus 356 lPvLve~s~dG~~s~~ri~L~----~~vtEVGs~~~~~---~~iqLfGP~IqprHc~it~meGVvTvTP~~~DA~t~VnG 428 (1629)
T KOG1892|consen 356 LPVLVELSPDGSDSRKRIRLQ----LSVTEVGSEKLDD---NSIQLFGPGIQPRHCDITNMEGVVTVTPRSMDAETYVNG 428 (1629)
T ss_pred CcEEEEEcCCCCCcceeEEec----cCceeccccccCC---cceeeeCCCCCccccchhhccceEEecccccchhhhccc
Confidence 36666654332122 345555 6678888876532 578999999999999999999999999986666799999
Q ss_pred CCCceeecCCCCcEEeCCCCEEEECCCceEEEEEEec
Q 005770 622 NEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 658 (678)
Q Consensus 622 ~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~~ 658 (678)
. +|. ++..|+.|+.|+||... .|+|.-.
T Consensus 429 h-----~is--qttiL~~G~~v~fGa~h--sfkF~ds 456 (1629)
T KOG1892|consen 429 H-----RIS--QTTILQSGMKVQFGASH--SFKFVDS 456 (1629)
T ss_pred e-----ecc--hhhhhccCCEEEeccce--eEEecCC
Confidence 9 887 57799999999999975 4666543
No 361
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=94.17 E-value=0.12 Score=53.88 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=32.0
Q ss_pred ceEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCC
Q 005770 203 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI 242 (678)
Q Consensus 203 ~~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~ 242 (678)
..++-+..|.++......+.+.+.||.+++.|+||.|-|-
T Consensus 408 V~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ 447 (659)
T KOG1346|consen 408 VDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGE 447 (659)
T ss_pred ceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecC
Confidence 3455666676776666677899999999999999999995
No 362
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=94.11 E-value=0.05 Score=57.40 Aligned_cols=35 Identities=34% Similarity=0.466 Sum_probs=33.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
...+|++|||+|.-||++|..|+|.|.+|.++|++
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerr 46 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERR 46 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEe
Confidence 56799999999999999999999999999999997
No 363
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.10 E-value=0.076 Score=55.52 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
..++|+|||+|-.|.++|..|++.|++|+++.|..
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 44689999999999999999999999999998863
No 364
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.09 E-value=0.17 Score=56.93 Aligned_cols=32 Identities=38% Similarity=0.465 Sum_probs=29.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
...+|||||.-|+.+|..|...|+++++++-.
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~ 177 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIA 177 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeec
Confidence 44799999999999999999999999999744
No 365
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.99 E-value=0.07 Score=59.49 Aligned_cols=35 Identities=34% Similarity=0.429 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
...+|+|||+|++|+.+|..|+++|++|+++|+.+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34579999999999999999999999999999763
No 366
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.96 E-value=0.082 Score=48.62 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 80 v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
|+|+|+|-.|+..|..|++.|++|.++.|.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 789999999999999999999999999886
No 367
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.92 E-value=0.061 Score=59.56 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=30.2
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
+|+|||.|++|+++|..|+++|++|+++|++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999999999999874
No 368
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=93.60 E-value=0.21 Score=55.40 Aligned_cols=69 Identities=12% Similarity=0.094 Sum_probs=60.3
Q ss_pred CCcEEeCCCCCCCCCcceEEeCCCcccccceEEEEe--CCEEEEEeCCCCCceEecCCCCceeecCCCCcEEeCCCCEEE
Q 005770 567 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIE 644 (678)
Q Consensus 567 ~~~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~--~~~~~i~Dl~S~nGt~v~~~~~~~~~~~~~~~~~l~~gd~i~ 644 (678)
...+++||+++. .|.|...||+..++..+ .+.+.|.-|| .|.+-|||. -+.++....|++||.+.
T Consensus 31 ~~~~~~gr~pet-------~i~d~~cs~~qv~l~a~~~~~~v~~k~lg-~np~~~~~~-----~~~~~~~~~l~~g~~l~ 97 (526)
T TIGR01663 31 AGALFLGRGPET-------GIRDRKCSKRQIELQADLEKATVALKQLG-VNPCGTGGL-----ELKPGGEGELGHGDLLE 97 (526)
T ss_pred CCceEEccCccc-------ccchhhhchhhheeeecccCceEEEEEcc-CCCcccCce-----EecCCCeeeecCCCEEE
Confidence 567889999993 67799999999999887 6778888885 899999999 99999999999999998
Q ss_pred ECCC
Q 005770 645 FGSD 648 (678)
Q Consensus 645 ~g~~ 648 (678)
+=..
T Consensus 98 ~v~~ 101 (526)
T TIGR01663 98 IVNG 101 (526)
T ss_pred Eecc
Confidence 7663
No 369
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.44 E-value=0.089 Score=54.87 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=30.5
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
+|.|||+|..|..+|..|+++|++|+++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999874
No 370
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.41 E-value=0.1 Score=53.94 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=31.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
..+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4579999999999999999999999999999874
No 371
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.40 E-value=0.11 Score=53.62 Aligned_cols=34 Identities=38% Similarity=0.490 Sum_probs=31.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4799999999999999999999999999998754
No 372
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=93.36 E-value=0.089 Score=56.98 Aligned_cols=36 Identities=22% Similarity=0.472 Sum_probs=28.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
..++||+|+|-|..-+.+|.+|++.|.+|+.+|+++
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~ 37 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRND 37 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSS
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCC
Confidence 467999999999999999999999999999999985
No 373
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.24 E-value=0.12 Score=53.39 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=30.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
.+|.|||+|..|..+|..|+++|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 374
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.21 E-value=0.1 Score=54.69 Aligned_cols=35 Identities=34% Similarity=0.455 Sum_probs=32.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~ 112 (678)
++|.|+|.|-+||+.|..|++.|++|+++|.++..
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~K 35 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESK 35 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 47999999999999999999999999999987643
No 375
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=93.17 E-value=0.11 Score=57.78 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=34.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHc-CCcEEEEeccccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMSA 112 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~-g~~~~~~e~~~~~ 112 (678)
....+|.+|||||-||+.+|..|++. .++|+|+|+...+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 45679999999999999999999986 7899999997654
No 376
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.03 E-value=0.15 Score=47.20 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=31.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~ 108 (678)
......|+|||||.+|...|..|.+.|.+|+|+.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 34567899999999999999999999999999953
No 377
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=93.03 E-value=2.8 Score=46.89 Aligned_cols=35 Identities=43% Similarity=0.609 Sum_probs=32.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~ 112 (678)
+||+|||||++||++|..|+++|++|+|+||+..+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP 35 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 58999999999999999999999999999998643
No 378
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.99 E-value=0.13 Score=53.46 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=30.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
++|+|+|+|..|...|..|++.|.+|+++.|.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 57999999999999999999999999999985
No 379
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.97 E-value=0.14 Score=56.54 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=32.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
...+|+|+|+|.+|+.+|..|+++|++|+++|+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45789999999999999999999999999999863
No 380
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.80 E-value=0.17 Score=52.80 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=31.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..|.|||+|..|...|..++.+|++|+++|+.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5699999999999999999999999999998753
No 381
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=92.76 E-value=0.03 Score=52.90 Aligned_cols=35 Identities=20% Similarity=0.457 Sum_probs=30.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHc--CCcEEEEecccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 111 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~--g~~~~~~e~~~~ 111 (678)
..||+|||+|-+||++|+..+++ .++|.|||..-.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVa 112 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVA 112 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeec
Confidence 47999999999999999999865 679999997643
No 382
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.57 E-value=0.16 Score=52.47 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999874
No 383
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=92.56 E-value=0.044 Score=58.57 Aligned_cols=44 Identities=7% Similarity=0.006 Sum_probs=33.4
Q ss_pred ccCcccccCCcccccccccccccccccccccCCCcccccccccccC
Q 005770 20 THFPVPVYKHSCIEFSRYDHCINYKFRTGTSGQSKNPTQMKAAVAE 65 (678)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (678)
-.|++|+.+++.+++++|++|++|...........|. +||..+.
T Consensus 326 P~l~~k~~~g~~~~i~~Ci~Cn~C~~~~~~~~~~~C~--vNp~~g~ 369 (370)
T cd02929 326 PFLPKKIREGRIDDIRECIGCNICISGDEGGVPMRCT--QNPTAGE 369 (370)
T ss_pred chHHHHHHcCCccccccCCchhhhhccccCCCCceec--cCccccC
Confidence 4789999999999999999999975554433334555 8887654
No 384
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.53 E-value=0.16 Score=52.16 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=31.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 4699999999999999999999999999998743
No 385
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.50 E-value=0.15 Score=52.94 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=29.0
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~ 108 (678)
+|+|+|+|..|..+|..|++.|++|++++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999987
No 386
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.14 Score=52.08 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=33.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 74 ~~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
...++|.+|||||-+||+||-..+..|.+|.++|--.+
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~P 53 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKP 53 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeeccc
Confidence 34679999999999999999999999999999996543
No 387
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.45 E-value=0.12 Score=44.19 Aligned_cols=34 Identities=32% Similarity=0.327 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
+...|+|||||.+|..-+..|.+.|.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4578999999999999999999999999999876
No 388
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.43 E-value=0.16 Score=52.81 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=29.6
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
+|+|||+|-.|..+|..|++.|++|++++|+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 6999999999999999999999999999985
No 389
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.40 E-value=0.15 Score=52.53 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=30.7
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 699999999999999999999999999998743
No 390
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.35 E-value=0.16 Score=55.34 Aligned_cols=35 Identities=26% Similarity=0.133 Sum_probs=32.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..+|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 35799999999999999999999999999998754
No 391
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=92.28 E-value=0.13 Score=51.56 Aligned_cols=36 Identities=33% Similarity=0.353 Sum_probs=29.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-------CcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKG-------FEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g-------~~~~~~e~~~~ 111 (678)
+..+|+|||+|..||++|+.+.+.+ ++|++++-+..
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~ 44 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT 44 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence 4578999999999999999998854 57888875543
No 392
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.26 E-value=0.21 Score=48.55 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
....|+|||||.+|..-+..|.+.|.+|+|++..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3468999999999999999999999999999864
No 393
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.16 E-value=0.46 Score=54.18 Aligned_cols=104 Identities=20% Similarity=0.286 Sum_probs=75.3
Q ss_pred CCceEEEecCCCCCcCcceeee-cccCCCcEEeCCCCCCCCCcceEEeCCCcccccceEEEEe-CCEEEEEeCCCCCceE
Q 005770 541 NGEWFLVPSGSENVVSQPIYLS-VSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK-DGAFYLIDLQSEHGTY 618 (678)
Q Consensus 541 ~~~~~Ll~~~~~~~~~~~l~~~-~~~~~~~~~iGR~~~~~~~~~~~~~~~~~vSr~Ha~i~~~-~~~~~i~Dl~S~nGt~ 618 (678)
...++|+...+.+ .+.+. ..-.+...+||-... .+|++..-.|=++||+|..+ ++.+++.-+.++ -++
T Consensus 443 dDK~ylvnlnadP----~lnellvyyl~~~tlig~~~~-----~~i~l~glgi~p~h~vidI~~dg~l~~~p~~~~-R~~ 512 (1714)
T KOG0241|consen 443 DDKCYLVNLNADP----ALNELLVYYLKDHTLIGLFKS-----QDIQLSGLGIQPKHCVIDIESDGELRLTPLLNA-RSC 512 (1714)
T ss_pred ccceEEEeccCCc----cHHHHHHHhhcCceeeccccC-----cceeeecCcccCccceeeeccCCcEEecccccc-eee
Confidence 3457777765443 22221 112255678886666 78999999999999999987 555888887555 899
Q ss_pred ecCCCCceeecCCCCcEEeCCCCEEEECCCceEEEEEEeccCCCC
Q 005770 619 VTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGTPPN 663 (678)
Q Consensus 619 v~~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~~~~~~~ 663 (678)
|||. .+. ++.+|.+||+|..|+.. .|++-.+...-.
T Consensus 513 VNGs-----~v~--~~t~L~~GdRiLwGnnH--FFrvN~PK~~~~ 548 (1714)
T KOG0241|consen 513 VNGS-----LVC--STTQLWHGDRILWGNNH--FFRVNLPKRKRR 548 (1714)
T ss_pred ecCc-----eec--cccccccCceEEecccc--eEEecCcccccc
Confidence 9998 544 57899999999999986 588877755443
No 394
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.13 E-value=0.15 Score=45.93 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=28.1
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 80 v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
++|+|+|+.+..+|..++..|++|+++|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998754
No 395
>PLN02612 phytoene desaturase
Probab=91.96 E-value=4.1 Score=46.33 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=39.8
Q ss_pred HHHHHHHhc--CCceEEeCCeEEEEEEeCCe--EEEEEcCCcEEeccEEEEecCCCchhhhh
Q 005770 192 LQQILAKAV--GDEIILNESNVIDFKDHGDK--VSVVLENGQCYAGDLLIGADGIWSKVRKN 249 (678)
Q Consensus 192 l~~~L~~~~--~~~~i~~~~~v~~~~~~~~~--v~v~~~dg~~i~a~~vVgADG~~S~VR~~ 249 (678)
|.+.|.+.+ ....|+++++|++|+.++++ +.+.+.+|+++.||.||.|... ...++.
T Consensus 310 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~-~~l~~L 370 (567)
T PLN02612 310 LCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV-DILKLL 370 (567)
T ss_pred HHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH-HHHHHh
Confidence 445555543 23458999999999986555 3467778989999999999764 334433
No 396
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=91.95 E-value=8.5 Score=43.08 Aligned_cols=32 Identities=34% Similarity=0.565 Sum_probs=30.4
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 80 v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
|+|||||++||++|..|++.|++|+|+|++..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~ 32 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDK 32 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 69999999999999999999999999999864
No 397
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.95 E-value=0.21 Score=44.96 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=30.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEeccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~ 110 (678)
+.+|+|+|+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4679999999999999999999999 699999874
No 398
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=91.84 E-value=0.23 Score=48.05 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~ 109 (678)
...+|+|||+|-.|...|..|++.|+ +++|+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999999999999999999999 69999987
No 399
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.81 E-value=0.26 Score=47.82 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=31.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
.....|+|||||-+|...|..|.+.|.+|+|+++.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 34578999999999999999999999999999753
No 400
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.53 E-value=0.25 Score=51.44 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=29.5
Q ss_pred eEEEECCCHHHHHHHHHHHHcCC--cEEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~--~~~~~e~~~ 110 (678)
+|.|||+|.+|+++|+.|+.+|+ .+.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 69999999999999999999994 899999864
No 401
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.49 E-value=0.3 Score=45.85 Aligned_cols=35 Identities=31% Similarity=0.304 Sum_probs=29.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
....|+|+|+|.+|..+|..|...|++|+++|..+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 34789999999999999999999999999999764
No 402
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=91.35 E-value=1.4 Score=48.94 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=27.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~ 109 (678)
..+|+|||||.+|+-+|..+.+.|. +|++++..
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 4689999999999999999889886 67766543
No 403
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=91.28 E-value=0.37 Score=43.79 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=29.6
Q ss_pred CeEEEECC-CHHHHHHHHHHHHcCC--cEEEEeccc
Q 005770 78 LRILVAGG-GIGGLVFALAAKRKGF--EVLVFEKDM 110 (678)
Q Consensus 78 ~~v~ivG~-G~~G~~~a~~l~~~g~--~~~~~e~~~ 110 (678)
++|.|||+ |.+|.++|+.|...++ ++.|+|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 9999999999999987 699999874
No 404
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.26 E-value=0.31 Score=42.46 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=28.8
Q ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 80 v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
|+|+|.|..|..++..|.+.+++|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999999864
No 405
>PRK04148 hypothetical protein; Provisional
Probab=91.24 E-value=0.24 Score=44.17 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=29.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
..|++||.| .|..+|..|++.|++|+.+|.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 579999999 99999999999999999999764
No 406
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.16 E-value=0.43 Score=43.05 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=31.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCc-EEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~-~~~~e~~~ 110 (678)
....|+|+|+|-+|.+++..|+..|.+ ++|+.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 457899999999999999999999997 99998863
No 407
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.07 E-value=0.32 Score=49.20 Aligned_cols=35 Identities=29% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~ 110 (678)
....|+|||+|-+|..+|..|++.|+ +++|+|.+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 45689999999999999999999996 899999764
No 408
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.06 E-value=0.38 Score=50.25 Aligned_cols=36 Identities=19% Similarity=0.475 Sum_probs=32.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCC--cEEEEeccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 110 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~--~~~~~e~~~ 110 (678)
....+|.|||+|-+|.++|+.|+..|+ ++.|+|.+.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 445799999999999999999999999 799999863
No 409
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.05 E-value=0.29 Score=51.85 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=30.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
.+|.|||+|..|...|..|++.|++|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 46999999999999999999999999999975
No 410
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.03 E-value=0.32 Score=50.81 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=30.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
.+|.|||+|..|..+|..|++.|++|+++|+++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 469999999999999999999999999999764
No 411
>PRK07233 hypothetical protein; Provisional
Probab=90.91 E-value=11 Score=40.94 Aligned_cols=34 Identities=44% Similarity=0.721 Sum_probs=31.6
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEeccccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~ 112 (678)
+|+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~ 34 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQL 34 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence 5999999999999999999999999999998643
No 412
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=90.79 E-value=0.35 Score=50.22 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=29.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCC-cEEEEecc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~ 109 (678)
.+|.|||+|.+|+.+|..|+.+|+ +|+++|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 479999999999999999999887 89999984
No 413
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.78 E-value=0.34 Score=50.17 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=30.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
.+|.|||+|..|...|..|++.|++|+++|+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999874
No 414
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=90.72 E-value=0.55 Score=52.73 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=31.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
-...+|+|||+|..|.=.|..|++..-+|.+.-|..
T Consensus 181 f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 181 FKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred cCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 345789999999999999999999999999988764
No 415
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.68 E-value=0.43 Score=49.94 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~~ 111 (678)
+..+|+|||+|-+|..+|..|+..|+ ++.|+|.++.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 44689999999999999999999997 9999998753
No 416
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=90.57 E-value=1.4 Score=49.61 Aligned_cols=61 Identities=21% Similarity=0.377 Sum_probs=45.1
Q ss_pred EEeCHHHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeEE-EEEc---CC--cEEeccEEEEecCCCch
Q 005770 185 RVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLE---NG--QCYAGDLLIGADGIWSK 245 (678)
Q Consensus 185 ~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v~-v~~~---dg--~~i~a~~vVgADG~~S~ 245 (678)
..++-..|...|.+.+. +..++.+++|++++.+++++. |++. +| .+++|+.||-|-|.+|.
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 36777778777766652 345888999999998777643 4443 34 37999999999999875
No 417
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.54 E-value=0.34 Score=50.96 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=29.9
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
+|.|||+|..|.++|..|++.|++|+++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999999863
No 418
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.45 E-value=0.34 Score=52.18 Aligned_cols=35 Identities=31% Similarity=0.229 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
....|+|+|+|+.|+.+|..|...|.+|+++|.++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 34689999999999999999999999999999763
No 419
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.37 E-value=0.36 Score=50.78 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=30.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
++|.|||+|..|...|..|++.|++|++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999863
No 420
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=90.34 E-value=0.46 Score=44.55 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=31.2
Q ss_pred CCCCeEEEECCCH-HHHHHHHHHHHcCCcEEEEecc
Q 005770 75 NKKLRILVAGGGI-GGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 75 ~~~~~v~ivG~G~-~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
-...+|+|||+|- +|..+|..|.++|.+|+++.|.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 4568999999996 6999999999999999999875
No 421
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.33 E-value=0.39 Score=51.39 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
...+|+|+|+|.+|+.+|..|.+.|.+|+++|+++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 34679999999999999999999999999999863
No 422
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.27 E-value=0.44 Score=49.70 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=31.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
.++|.|||+|-.|..+|..|++.|++|++++|..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4579999999999999999999999999999864
No 423
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.18 E-value=0.34 Score=53.65 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
...+|+|+|+|++|+.++..+...|.+|+++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35789999999999999999999999999999864
No 424
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=90.18 E-value=1.9 Score=46.45 Aligned_cols=42 Identities=24% Similarity=0.215 Sum_probs=33.7
Q ss_pred eEEeCCeEEEEEEeCCeEEEEEcCCcEEeccEEEEecCCCchhhh
Q 005770 204 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRK 248 (678)
Q Consensus 204 ~i~~~~~v~~~~~~~~~v~v~~~dg~~i~a~~vVgADG~~S~VR~ 248 (678)
.+++++.|+.++.... ++.+.+|+++.++.+|.|.|. |+.+-
T Consensus 143 e~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs-~~~~l 184 (478)
T KOG1336|consen 143 ELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS-SAKTL 184 (478)
T ss_pred eEEEcceeEEeecccc--EEEeCCCceeecceEEEeecC-ccccC
Confidence 3677999999876654 567889999999999999999 44443
No 425
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=90.15 E-value=0.31 Score=53.04 Aligned_cols=33 Identities=33% Similarity=0.337 Sum_probs=30.9
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
+|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998754
No 426
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=90.14 E-value=0.41 Score=50.98 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=30.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc-EEEEeccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~-~~~~e~~~ 110 (678)
...|+|||+|+.|+.+|..|.+.|.+ |+|+++..
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 35899999999999999999999997 99999763
No 427
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.02 E-value=0.41 Score=50.45 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~ 110 (678)
....|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 34679999999999999999999999 899999874
No 428
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.99 E-value=0.38 Score=46.48 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=30.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
....+|+|||+|.++.-+|..|++.|-+|+++-|.+
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 345789999999999999999999999999998864
No 429
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=89.82 E-value=0.39 Score=52.99 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=31.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
..+|+|||||.+|+-+|..|.+.|.+|+++++..
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3689999999999999999999999999999863
No 430
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=89.81 E-value=0.36 Score=54.81 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=31.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
..+|+|||||++|+.+|..|++.|.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 4689999999999999999999999999999863
No 431
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.53 E-value=0.4 Score=49.16 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=29.9
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
+|.|||.|..|.++|..|+++|++|+++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999863
No 432
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=89.48 E-value=2.2 Score=51.89 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=29.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~ 109 (678)
..+|+|||+|+.|+.+|..|++.|. .|+|+|..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~ 350 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDAR 350 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccC
Confidence 4689999999999999999999996 47888865
No 433
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.44 E-value=0.53 Score=45.72 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~ 110 (678)
....|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 45789999999999999999999999 899999863
No 434
>PRK12831 putative oxidoreductase; Provisional
Probab=89.44 E-value=0.46 Score=52.57 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
...+|+|||||.+|+-+|..|.+.|.+|+++++..
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34689999999999999999999999999999763
No 435
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=89.23 E-value=0.51 Score=49.15 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=30.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCC--cEEEEeccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 110 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~--~~~~~e~~~ 110 (678)
..+|+|||+|..|.++|..|.+.|+ +|.++++.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 3579999999999999999999995 889998763
No 436
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=89.19 E-value=0.47 Score=49.77 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=30.1
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
+|.|||+|..|..+|..|++.|++|+++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999863
No 437
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=89.02 E-value=0.59 Score=46.83 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=32.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
....++|+|||+.+..+|..++..|++|+|+|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 346899999999999999999999999999997654
No 438
>PRK06223 malate dehydrogenase; Reviewed
Probab=88.85 E-value=0.58 Score=48.73 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=30.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCC-cEEEEeccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~ 110 (678)
.+|.|||+|.+|..+|..|+..|+ +|.|+|.++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 489999999999999999999876 999999853
No 439
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.71 E-value=0.63 Score=43.97 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=29.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCc-EEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~-~~~~e~~~ 110 (678)
+|+|||+|-.|...|..|++.|+. ++|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999999999995 99999863
No 440
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.70 E-value=0.6 Score=49.20 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~ 110 (678)
...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 45689999999999999999999999 899999863
No 441
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=88.52 E-value=20 Score=38.67 Aligned_cols=53 Identities=8% Similarity=0.077 Sum_probs=38.5
Q ss_pred HHHHHHHhc--CCceEEeCCeEEEEEEeCCeEEEEE-cCCcEEeccEEEEecCCCc
Q 005770 192 LQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVL-ENGQCYAGDLLIGADGIWS 244 (678)
Q Consensus 192 l~~~L~~~~--~~~~i~~~~~v~~~~~~~~~v~v~~-~dg~~i~a~~vVgADG~~S 244 (678)
+.+.|.+.+ ....|+++++|++|+.+++++++++ .+|+++.||.||.|--...
T Consensus 199 ~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 199 FPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHH
Confidence 344455444 1345899999999999888876655 3678899999999866543
No 442
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.46 E-value=0.53 Score=50.65 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=29.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEeccccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~~ 112 (678)
+|.|||.|-+|+.+|..|+. |++|+++|+++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k 34 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR 34 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence 59999999999999998885 9999999987543
No 443
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=88.44 E-value=0.57 Score=51.68 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=30.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEeccccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSA 112 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~--g~~~~~~e~~~~~ 112 (678)
++|+|||.|-+|+.+|..|+++ |++|+.+|.++..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~ 38 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPR 38 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHH
Confidence 4699999999999999999998 4789999987543
No 444
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=88.37 E-value=0.62 Score=52.00 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=31.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
.+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999998643
No 445
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=88.37 E-value=0.67 Score=46.27 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~ 110 (678)
...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 34789999999999999999999998 688888764
No 446
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.14 E-value=0.7 Score=45.50 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=29.1
Q ss_pred eEEEEC-CCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 79 RILVAG-GGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG-~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
+|.||| +|..|.++|..|++.|++|++++|.+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 699997 79999999999999999999998753
No 447
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=88.13 E-value=0.66 Score=51.83 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
-..|.|||+|..|.-.|..|++.|++|+++|+.+.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35699999999999999999999999999998753
No 448
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=88.06 E-value=0.76 Score=44.97 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCc-EEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~-~~~~e~~~ 110 (678)
....|+|||+|-.|..+|..|++.|+. ++|+|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 457899999999999999999999995 99999863
No 449
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=87.98 E-value=0.75 Score=46.11 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~ 110 (678)
...+|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45789999999999999999999998 788999763
No 450
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=87.96 E-value=0.72 Score=48.02 Aligned_cols=32 Identities=22% Similarity=0.515 Sum_probs=29.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCC--cEEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~--~~~~~e~~~ 110 (678)
+|+|||+|-+|.++|..|+..|+ ++.|+|++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 69999999999999999999994 799999874
No 451
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=87.95 E-value=0.76 Score=41.77 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=29.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCC-cEEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~ 110 (678)
+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999999 699999764
No 452
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=87.85 E-value=0.79 Score=49.24 Aligned_cols=35 Identities=34% Similarity=0.364 Sum_probs=32.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
....|+|+|.|++|..+|..|...|.+|+++|.++
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 45689999999999999999999999999999875
No 453
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.62 E-value=0.88 Score=47.40 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=30.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCC--cEEEEeccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 110 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~--~~~~~e~~~ 110 (678)
..+|.|||+|-+|.++|+.|+..|+ ++.|+|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4589999999999999999999987 688999764
No 454
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=87.55 E-value=0.69 Score=51.57 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=31.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
.+|.|||+|..|.-.|..|++.|++|+++|+.+.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998753
No 455
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.52 E-value=0.98 Score=43.76 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
....|+|+|.|-.|..+|..|.+.|++|+++|++
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4467999999999999999999999999999865
No 456
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=87.46 E-value=0.82 Score=47.28 Aligned_cols=35 Identities=29% Similarity=0.290 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
...+|+|+|.|.+|..+|..|++.|.+|+++++++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45789999999999999999999999999999874
No 457
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.43 E-value=0.75 Score=48.91 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=31.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcC-CcEEEEecccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMS 111 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g-~~~~~~e~~~~ 111 (678)
.+|+|+|+|-+|..+|..|+++| .+|+|.+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 47999999999999999999999 89999999743
No 458
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=87.39 E-value=0.84 Score=42.61 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=29.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
.+|.|||-|-.|...|..|.++|++|.++|+.+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 4799999999999999999999999999998753
No 459
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.37 E-value=0.82 Score=50.41 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=30.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
...|+|+|+|..|+++|..|++.|++|++.|+..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999763
No 460
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=87.21 E-value=0.86 Score=47.23 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=33.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
..+||+|+|-|+.=+.++.+|+..|.+|+.+|+++.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~ 40 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDY 40 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCc
Confidence 369999999999999999999999999999999853
No 461
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=87.11 E-value=0.4 Score=42.57 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=27.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEec
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~ 108 (678)
....+|.|||+|-+|..+|..|.+.|+.|.-+..
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~s 41 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYS 41 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESS
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 4568999999999999999999999999887754
No 462
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.11 E-value=0.96 Score=49.86 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=31.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
...|+|+|.|.+|+++|..|+++|++|+++|...
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4579999999999999999999999999999753
No 463
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=86.96 E-value=0.9 Score=45.04 Aligned_cols=35 Identities=29% Similarity=0.333 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~ 110 (678)
...+|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35689999999999999999999999 788998763
No 464
>PTZ00117 malate dehydrogenase; Provisional
Probab=86.92 E-value=0.97 Score=47.28 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-CcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g-~~~~~~e~~~ 110 (678)
+..+|+|||||-+|.++|..|+..| .++.|+|.+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4568999999999999999999999 5899999864
No 465
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=86.49 E-value=1 Score=46.34 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=30.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~ 109 (678)
...+|+|+|+|-+|.++|..|++.|+ +++|++|.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34689999999999999999999998 79999886
No 466
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=86.45 E-value=0.84 Score=47.43 Aligned_cols=32 Identities=22% Similarity=0.500 Sum_probs=28.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
++|+|+|+|-.|...|..|++.|..|+++-|.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~ 32 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRS 32 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecH
Confidence 46999999999999999999999888888665
No 467
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=86.42 E-value=1.1 Score=43.07 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=30.4
Q ss_pred CCCeEEEECC-CHHHHHHHHHHHHcCCcEEEEecc
Q 005770 76 KKLRILVAGG-GIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 76 ~~~~v~ivG~-G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
...+|+|+|| |.+|..+|..|++.|.+|+++.|+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3468999997 999999999999999999999875
No 468
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=86.42 E-value=0.83 Score=48.55 Aligned_cols=31 Identities=32% Similarity=0.442 Sum_probs=26.0
Q ss_pred eEEEECCCHHHHHHHHHHHHcCC-cEEEEecc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~ 109 (678)
.|+|+|+||.||.++..+...|. +|+++|+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~ 202 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRS 202 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 69999999999999888888897 45566664
No 469
>PRK08328 hypothetical protein; Provisional
Probab=86.37 E-value=1 Score=44.76 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=30.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~ 110 (678)
....|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 34679999999999999999999999 688998763
No 470
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=86.32 E-value=0.86 Score=50.38 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
..+|+|+|+|++|+.++..+...|..|+++|+++
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
No 471
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=86.31 E-value=0.86 Score=50.40 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=30.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~ 109 (678)
..+|+|||||.+|+-+|..|++.|. +|+++++.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 4689999999999999999999998 89999975
No 472
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.25 E-value=1 Score=44.57 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~ 110 (678)
....|+|||.|-+|..+|..|++.|+ +++|+|.+.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 34689999999999999999999999 889999764
No 473
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.22 E-value=0.86 Score=50.32 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=30.8
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
+|+|+|+|..|..+|..|.++|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999998654
No 474
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=86.21 E-value=1.1 Score=41.47 Aligned_cols=35 Identities=34% Similarity=0.263 Sum_probs=28.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
....|+|+|-|.+|..+|..|+..|.+|+|.|.+|
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 34679999999999999999999999999999875
No 475
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=86.07 E-value=0.85 Score=47.32 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=28.5
Q ss_pred EEEECCCHHHHHHHHHHHHcCC-cEEEEeccc
Q 005770 80 ILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (678)
Q Consensus 80 v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~ 110 (678)
|.|||+|-+|..+|..|+.+|+ +|+++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 6899999999999999999987 999999873
No 476
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=86.04 E-value=0.79 Score=44.10 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
....|.|||||..|.-.|...+..|+.|+|+|++..
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 346799999999999999999999999999998753
No 477
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=86.00 E-value=1.1 Score=43.38 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~ 110 (678)
....|+|||+|..|...|..|++.|+ +++++|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 35789999999999999999999999 588998763
No 478
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=85.99 E-value=1.1 Score=48.57 Aligned_cols=35 Identities=31% Similarity=0.216 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
....|+|+|.|.+|..+|..|...|.+|+++|+++
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 45679999999999999999999999999999874
No 479
>PLN02576 protoporphyrinogen oxidase
Probab=85.96 E-value=20 Score=40.02 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCceEEeCCeEEEEEEeCCe-EEEEEc--CCc-EEeccEEEEecC
Q 005770 191 TLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLE--NGQ-CYAGDLLIGADG 241 (678)
Q Consensus 191 ~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~-v~v~~~--dg~-~i~a~~vVgADG 241 (678)
.|-+.|.+.++...++++++|++|+..+++ +.|++. +|+ ++.||.||.|-=
T Consensus 240 ~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P 294 (496)
T PLN02576 240 TLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAP 294 (496)
T ss_pred HHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCC
Confidence 466677776653458999999999988876 766654 453 799999998853
No 480
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=85.87 E-value=1.1 Score=44.61 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=30.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC-----------CcEEEEeccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKG-----------FEVLVFEKDM 110 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g-----------~~~~~~e~~~ 110 (678)
....+|+|||+|-.|..++-.|++.| .+++|+|.+.
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 35678999999999999999999974 3889998763
No 481
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=85.84 E-value=3 Score=44.52 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHhc--CCceEEeCCeEEEEEEeCCeEEEEEcCC-cEEeccEEEEecCCCc
Q 005770 188 SRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENG-QCYAGDLLIGADGIWS 244 (678)
Q Consensus 188 ~r~~l~~~L~~~~--~~~~i~~~~~v~~~~~~~~~v~v~~~dg-~~i~a~~vVgADG~~S 244 (678)
.-..+..+|...+ .+..++++++|.++ +++++.+.+.++ ..++||.||.|.|..|
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 3455666666666 23568999999999 334577776543 4799999999999876
No 482
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=85.76 E-value=1.2 Score=44.08 Aligned_cols=34 Identities=21% Similarity=0.504 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFE---VLVFEKD 109 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~---~~~~e~~ 109 (678)
...+|+|+|+|-+|...|..|.+.|.+ ++|++|.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 346899999999999999999999985 9999987
No 483
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=85.70 E-value=0.82 Score=53.43 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
-..|.|||||..|.-.|..+++.|++|+++|.++.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999998743
No 484
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=85.68 E-value=1.9 Score=35.36 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=29.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCcEEEEec
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEK 108 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~-g~~~~~~e~ 108 (678)
...+++|+|+|-+|..+|..|.+. +.++.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 446799999999999999999998 678999988
No 485
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=85.61 E-value=1.2 Score=45.76 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
....|+|+|.|-+|..+|..|+..|.+|++++|.+
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45689999999999999999999999999999864
No 486
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.59 E-value=0.99 Score=49.94 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=30.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
.+|+|+|.|.+|+++|..|.++|++|++.|+++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 479999999999999999999999999999764
No 487
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=85.53 E-value=0.96 Score=52.76 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
.-..|.|||||..|.-.|..++..|++|+++|.++.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 345799999999999999999999999999998753
No 488
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.50 E-value=13 Score=39.59 Aligned_cols=48 Identities=27% Similarity=0.293 Sum_probs=37.3
Q ss_pred ceEEeCCeEEEEEEeCCe-EEEEEcC---C--cEEeccEEEEecCCCchhhhhh
Q 005770 203 EIILNESNVIDFKDHGDK-VSVVLEN---G--QCYAGDLLIGADGIWSKVRKNL 250 (678)
Q Consensus 203 ~~i~~~~~v~~~~~~~~~-v~v~~~d---g--~~i~a~~vVgADG~~S~VR~~l 250 (678)
..++.+++|.+++..+++ +.+++.. | ++++.|.||.|.|.+=.+-..+
T Consensus 293 v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 293 VRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFL 346 (436)
T ss_pred eeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence 357889999999998877 7777753 2 4899999999999985544444
No 489
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=85.13 E-value=0.96 Score=51.42 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=32.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
+-+|+|+|+|..|..+|..|.++|++|+++|+++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 46799999999999999999999999999998754
No 490
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=85.07 E-value=1.3 Score=42.85 Aligned_cols=35 Identities=17% Similarity=0.404 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCc-EEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~-~~~~e~~~ 110 (678)
....|+|||+|-.|..+|..|++.|+. ++|+|.+.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 347899999999999999999999995 88999763
No 491
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.97 E-value=1.2 Score=49.75 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=29.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecc
Q 005770 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (678)
Q Consensus 78 ~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~ 109 (678)
..|+|+|.|+.|++++..|.++|.+|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999999999999999999999999999964
No 492
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.84 E-value=1.2 Score=48.67 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=30.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 77 ~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
..+|+|||-|..|+++|..|.++|++|+.+|++.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3579999999999999999999999999999763
No 493
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=84.82 E-value=21 Score=39.76 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcC--CceEEeCCeEEEEEEeCCeE-EEEEcCC-----cEEeccEEEEecCCC
Q 005770 190 MTLQQILAKAVG--DEIILNESNVIDFKDHGDKV-SVVLENG-----QCYAGDLLIGADGIW 243 (678)
Q Consensus 190 ~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~v-~v~~~dg-----~~i~a~~vVgADG~~ 243 (678)
..|-+.|.+.+. +..|+.+++|++|..+++.+ .+.+.++ +++.||.||.+--.+
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 446666766662 34689999999998877653 2334343 578999999876654
No 494
>PRK08223 hypothetical protein; Validated
Probab=84.66 E-value=1.3 Score=45.07 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEeccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~ 110 (678)
....|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 45789999999999999999999999 688898763
No 495
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.59 E-value=1.3 Score=46.01 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=28.8
Q ss_pred eEEEECCCHHHHHHHHHHHHcCC--cEEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~--~~~~~e~~~ 110 (678)
+|.|||+|-+|.++|+.|..+|+ ++.|+|.+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 58999999999999999999988 699999763
No 496
>PLN02976 amine oxidase
Probab=84.53 E-value=53 Score=41.26 Aligned_cols=48 Identities=25% Similarity=0.232 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCceEEeCCeEEEEEEe----------CCeEEEEEcCCcEEeccEEEEecC
Q 005770 191 TLQQILAKAVGDEIILNESNVIDFKDH----------GDKVSVVLENGQCYAGDLLIGADG 241 (678)
Q Consensus 191 ~l~~~L~~~~~~~~i~~~~~v~~~~~~----------~~~v~v~~~dg~~i~a~~vVgADG 241 (678)
.|-+.|.+.+ .|++++.|+.|.+. +++|.|++.+|+++.||.||.+==
T Consensus 937 qLIeALAe~L---~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVP 994 (1713)
T PLN02976 937 NVVESLAEGL---DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVP 994 (1713)
T ss_pred HHHHHHHhhC---CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCC
Confidence 4445555544 38899999999884 467999999999999999998643
No 497
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=84.46 E-value=1 Score=46.44 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=29.8
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEeccc
Q 005770 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (678)
Q Consensus 79 ~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~ 110 (678)
+|.|||.|..|..+|..|++.|++|+++++.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999999874
No 498
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=84.38 E-value=1.2 Score=52.27 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=32.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecccc
Q 005770 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (678)
Q Consensus 76 ~~~~v~ivG~G~~G~~~a~~l~~~g~~~~~~e~~~~ 111 (678)
.-..|.|||||..|.-.|..++..|++|+++|..+.
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 345799999999999999999999999999998753
No 499
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=84.19 E-value=0.95 Score=49.02 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccccc
Q 005770 87 IGGLVFALAAKRKGFEVLVFEKDMSA 112 (678)
Q Consensus 87 ~~G~~~a~~l~~~g~~~~~~e~~~~~ 112 (678)
++||++|..|+++|++|+|+|+....
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~ 26 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRV 26 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSS
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCC
No 500
>PLN02676 polyamine oxidase
Probab=83.71 E-value=2.9 Score=46.61 Aligned_cols=37 Identities=19% Similarity=0.469 Sum_probs=33.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecccc
Q 005770 75 NKKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (678)
Q Consensus 75 ~~~~~v~ivG~G~~G~~~a~~l~~~g~-~~~~~e~~~~ 111 (678)
...+||+|||||++||++|..|+++|+ +|+|+|++..
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~ 61 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDR 61 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCC
Confidence 346799999999999999999999998 5999999753
Done!