Query 005771
Match_columns 678
No_of_seqs 266 out of 1792
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 13:32:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.4 1.2E-13 2.5E-18 147.8 4.7 49 629-677 230-279 (348)
2 PF13639 zf-RING_2: Ring finge 99.4 1.5E-13 3.2E-18 105.6 2.0 44 629-672 1-44 (44)
3 COG5540 RING-finger-containing 99.1 4.8E-11 1E-15 124.6 3.8 51 627-677 322-373 (374)
4 PF12678 zf-rbx1: RING-H2 zinc 99.1 7.5E-11 1.6E-15 100.6 4.0 47 626-672 17-73 (73)
5 PHA02929 N1R/p28-like protein; 99.1 1.1E-10 2.4E-15 120.0 5.6 51 626-676 172-227 (238)
6 COG5243 HRD1 HRD ubiquitin lig 99.0 1.2E-10 2.6E-15 124.3 4.0 52 624-675 283-344 (491)
7 KOG0317 Predicted E3 ubiquitin 99.0 1.3E-10 2.9E-15 120.9 3.9 52 624-678 235-286 (293)
8 KOG0823 Predicted E3 ubiquitin 98.9 5.3E-10 1.1E-14 113.5 3.5 49 625-676 44-95 (230)
9 PLN03208 E3 ubiquitin-protein 98.9 1E-09 2.2E-14 109.4 5.4 48 626-676 16-79 (193)
10 KOG0320 Predicted E3 ubiquitin 98.9 1.7E-09 3.7E-14 106.2 4.1 56 620-676 123-178 (187)
11 cd00162 RING RING-finger (Real 98.8 4.8E-09 1E-13 77.9 4.1 44 630-675 1-45 (45)
12 PF13920 zf-C3HC4_3: Zinc fing 98.8 3.2E-09 6.9E-14 83.8 3.0 46 628-676 2-48 (50)
13 PF13923 zf-C3HC4_2: Zinc fing 98.8 4.1E-09 8.8E-14 79.3 2.6 39 631-671 1-39 (39)
14 KOG0802 E3 ubiquitin ligase [P 98.7 7E-09 1.5E-13 117.8 2.2 51 626-676 289-341 (543)
15 smart00504 Ubox Modified RING 98.6 3.2E-08 7E-13 80.4 4.5 45 629-676 2-46 (63)
16 PHA02926 zinc finger-like prot 98.6 2E-08 4.3E-13 101.9 3.9 51 625-675 167-229 (242)
17 PF12861 zf-Apc11: Anaphase-pr 98.6 3.2E-08 7E-13 87.2 4.2 49 627-675 20-81 (85)
18 PF15227 zf-C3HC4_4: zinc fing 98.6 2.2E-08 4.8E-13 77.1 2.6 38 631-671 1-42 (42)
19 PF14634 zf-RING_5: zinc-RING 98.6 5.7E-08 1.2E-12 75.1 3.8 44 630-673 1-44 (44)
20 smart00184 RING Ring finger. E 98.5 9.8E-08 2.1E-12 68.4 4.1 38 631-671 1-39 (39)
21 TIGR00599 rad18 DNA repair pro 98.5 6.5E-08 1.4E-12 106.1 3.8 49 625-676 23-71 (397)
22 COG5574 PEX10 RING-finger-cont 98.5 5.3E-08 1.1E-12 100.8 2.9 49 626-677 213-263 (271)
23 PF00097 zf-C3HC4: Zinc finger 98.5 6.1E-08 1.3E-12 73.0 2.5 39 631-671 1-41 (41)
24 COG5194 APC11 Component of SCF 98.3 6.6E-07 1.4E-11 77.8 4.1 32 644-675 49-80 (88)
25 KOG2164 Predicted E3 ubiquitin 98.2 5.4E-07 1.2E-11 100.3 2.7 47 628-677 186-237 (513)
26 KOG0828 Predicted E3 ubiquitin 98.2 6.5E-07 1.4E-11 98.9 2.6 53 625-677 568-635 (636)
27 KOG0287 Postreplication repair 98.2 5.9E-07 1.3E-11 95.7 1.8 46 628-676 23-68 (442)
28 COG5432 RAD18 RING-finger-cont 98.1 1.3E-06 2.9E-11 91.4 2.5 45 627-674 24-68 (391)
29 KOG1734 Predicted RING-contain 98.1 7.8E-07 1.7E-11 92.4 0.4 52 625-676 221-281 (328)
30 PF04564 U-box: U-box domain; 98.1 2E-06 4.3E-11 73.3 2.2 46 628-676 4-50 (73)
31 KOG2177 Predicted E3 ubiquitin 98.0 1.7E-06 3.8E-11 85.3 1.8 45 625-672 10-54 (386)
32 PF13445 zf-RING_UBOX: RING-ty 98.0 2.6E-06 5.6E-11 66.3 2.1 38 631-669 1-43 (43)
33 smart00744 RINGv The RING-vari 98.0 6.8E-06 1.5E-10 65.5 4.1 42 630-672 1-49 (49)
34 KOG1493 Anaphase-promoting com 97.9 2.7E-06 5.9E-11 73.6 -0.0 52 624-675 16-80 (84)
35 PF11793 FANCL_C: FANCL C-term 97.8 3.5E-06 7.6E-11 71.7 -0.1 48 628-675 2-65 (70)
36 KOG4265 Predicted E3 ubiquitin 97.8 1.1E-05 2.5E-10 86.8 3.1 49 626-677 288-337 (349)
37 COG5219 Uncharacterized conser 97.7 7.2E-06 1.6E-10 96.0 0.5 52 625-676 1466-1523(1525)
38 KOG2930 SCF ubiquitin ligase, 97.7 2E-05 4.3E-10 71.8 2.8 52 623-674 41-106 (114)
39 KOG1039 Predicted E3 ubiquitin 97.5 3.8E-05 8.2E-10 83.3 2.4 50 626-675 159-220 (344)
40 KOG0311 Predicted E3 ubiquitin 97.5 1.5E-05 3.3E-10 85.6 -1.2 47 627-676 42-90 (381)
41 KOG4172 Predicted E3 ubiquitin 97.4 3.6E-05 7.8E-10 63.0 0.4 46 628-676 7-54 (62)
42 KOG0825 PHD Zn-finger protein 97.4 2.5E-05 5.5E-10 90.3 -0.7 51 626-676 121-171 (1134)
43 KOG4445 Uncharacterized conser 97.3 0.00011 2.4E-09 77.7 2.6 53 624-676 111-186 (368)
44 KOG0978 E3 ubiquitin ligase in 97.3 7.4E-05 1.6E-09 86.9 1.3 48 627-677 642-690 (698)
45 KOG0804 Cytoplasmic Zn-finger 97.1 0.00018 3.9E-09 79.5 1.7 51 625-677 172-223 (493)
46 KOG4159 Predicted E3 ubiquitin 97.1 0.00036 7.7E-09 77.2 3.4 48 626-676 82-129 (398)
47 PF14835 zf-RING_6: zf-RING of 97.0 0.00013 2.9E-09 61.5 -0.6 44 629-676 8-51 (65)
48 KOG4692 Predicted E3 ubiquitin 96.9 0.00062 1.3E-08 73.5 3.0 49 625-676 419-467 (489)
49 PF11789 zf-Nse: Zinc-finger o 96.8 0.00056 1.2E-08 56.3 1.5 43 626-670 9-53 (57)
50 KOG1428 Inhibitor of type V ad 96.8 0.00083 1.8E-08 81.7 3.3 51 625-675 3483-3543(3738)
51 KOG1785 Tyrosine kinase negati 96.8 0.0005 1.1E-08 75.2 1.2 46 629-677 370-417 (563)
52 KOG2879 Predicted E3 ubiquitin 96.7 0.0014 3E-08 69.0 4.3 53 623-677 234-288 (298)
53 KOG4275 Predicted E3 ubiquitin 96.6 0.00058 1.2E-08 72.3 0.6 41 628-675 300-341 (350)
54 KOG1814 Predicted E3 ubiquitin 96.6 0.0013 2.8E-08 72.4 3.0 48 627-674 183-238 (445)
55 KOG0297 TNF receptor-associate 96.6 0.00099 2.2E-08 73.6 1.9 49 625-676 18-67 (391)
56 KOG1941 Acetylcholine receptor 96.4 0.0013 2.8E-08 71.9 1.3 46 628-673 365-413 (518)
57 KOG2660 Locus-specific chromos 96.2 0.0014 3E-08 70.5 0.6 49 625-675 12-60 (331)
58 COG5152 Uncharacterized conser 96.1 0.0029 6.2E-08 64.0 2.1 44 628-674 196-239 (259)
59 KOG1002 Nucleotide excision re 96.0 0.0032 6.9E-08 71.0 1.9 49 624-675 532-585 (791)
60 KOG2114 Vacuolar assembly/sort 95.9 0.0064 1.4E-07 71.9 3.8 43 627-674 839-881 (933)
61 KOG0801 Predicted E3 ubiquitin 95.6 0.0031 6.8E-08 62.0 -0.0 32 624-655 173-204 (205)
62 KOG3039 Uncharacterized conser 95.6 0.0095 2.1E-07 62.1 3.4 50 627-676 220-270 (303)
63 KOG1571 Predicted E3 ubiquitin 95.6 0.006 1.3E-07 66.3 2.0 44 626-675 303-346 (355)
64 PHA03096 p28-like protein; Pro 95.5 0.0069 1.5E-07 64.6 2.2 45 629-673 179-231 (284)
65 KOG3970 Predicted E3 ubiquitin 95.5 0.012 2.5E-07 60.7 3.5 48 629-677 51-106 (299)
66 KOG1813 Predicted E3 ubiquitin 95.5 0.0058 1.3E-07 65.0 1.3 45 628-675 241-285 (313)
67 COG5222 Uncharacterized conser 95.4 0.0086 1.9E-07 63.8 2.4 42 629-673 275-318 (427)
68 PF10367 Vps39_2: Vacuolar sor 95.4 0.0046 1E-07 54.9 0.3 33 626-659 76-108 (109)
69 COG5236 Uncharacterized conser 95.1 0.019 4.1E-07 62.3 3.8 52 620-674 53-106 (493)
70 PF05883 Baculo_RING: Baculovi 95.0 0.017 3.6E-07 55.4 2.6 37 628-664 26-68 (134)
71 PF14570 zf-RING_4: RING/Ubox 94.9 0.016 3.6E-07 46.5 2.1 44 631-674 1-46 (48)
72 PHA02825 LAP/PHD finger-like p 94.9 0.029 6.3E-07 55.2 4.0 47 625-675 5-58 (162)
73 KOG1952 Transcription factor N 94.7 0.022 4.8E-07 67.6 3.4 47 627-673 190-244 (950)
74 PF04641 Rtf2: Rtf2 RING-finge 94.4 0.041 8.8E-07 57.7 4.2 51 625-676 110-161 (260)
75 PF12906 RINGv: RING-variant d 94.3 0.025 5.4E-07 44.8 1.7 40 631-671 1-47 (47)
76 PHA02862 5L protein; Provision 94.2 0.039 8.5E-07 53.6 3.2 47 629-675 3-52 (156)
77 KOG0826 Predicted E3 ubiquitin 94.2 0.042 9.1E-07 59.4 3.7 50 624-675 296-345 (357)
78 KOG2034 Vacuolar sorting prote 94.1 0.023 4.9E-07 67.8 1.6 38 625-663 814-851 (911)
79 KOG0827 Predicted E3 ubiquitin 94.0 0.0035 7.6E-08 68.6 -4.7 50 627-676 195-245 (465)
80 KOG2932 E3 ubiquitin ligase in 94.0 0.021 4.6E-07 61.2 1.0 44 629-676 91-134 (389)
81 KOG3268 Predicted E3 ubiquitin 93.6 0.048 1E-06 54.6 2.6 48 628-675 165-227 (234)
82 PF14447 Prok-RING_4: Prokaryo 93.1 0.041 9E-07 45.4 1.1 46 627-677 6-51 (55)
83 KOG1001 Helicase-like transcri 92.8 0.042 9.2E-07 64.9 1.1 43 629-675 455-499 (674)
84 KOG1829 Uncharacterized conser 92.4 0.15 3.3E-06 59.2 4.9 44 626-672 509-557 (580)
85 PF10272 Tmpp129: Putative tra 91.8 0.37 8E-06 53.2 6.7 27 649-675 311-350 (358)
86 KOG0298 DEAD box-containing he 91.6 0.057 1.2E-06 66.7 0.2 44 627-673 1152-1196(1394)
87 COG5175 MOT2 Transcriptional r 91.3 0.14 3.1E-06 55.6 2.9 49 627-675 13-63 (480)
88 KOG1940 Zn-finger protein [Gen 90.7 0.13 2.8E-06 54.8 1.8 45 629-673 159-204 (276)
89 KOG0309 Conserved WD40 repeat- 88.9 0.21 4.5E-06 59.1 1.8 27 644-670 1043-1069(1081)
90 PF08746 zf-RING-like: RING-li 88.5 0.36 7.7E-06 37.7 2.3 39 631-671 1-43 (43)
91 KOG1609 Protein involved in mR 87.8 0.26 5.7E-06 51.6 1.7 49 627-675 77-133 (323)
92 COG5220 TFB3 Cdk activating ki 86.9 0.37 8E-06 50.5 2.0 46 627-672 9-60 (314)
93 COG5183 SSM4 Protein involved 86.7 0.56 1.2E-05 56.0 3.5 50 625-675 9-65 (1175)
94 KOG3053 Uncharacterized conser 86.4 0.35 7.7E-06 51.0 1.6 52 624-675 16-81 (293)
95 PF05290 Baculo_IE-1: Baculovi 86.2 0.97 2.1E-05 43.7 4.3 47 627-676 79-132 (140)
96 KOG1812 Predicted E3 ubiquitin 85.6 0.34 7.3E-06 53.9 1.0 39 627-665 145-184 (384)
97 KOG3002 Zn finger protein [Gen 85.4 0.57 1.2E-05 50.6 2.6 45 625-676 45-91 (299)
98 KOG1100 Predicted E3 ubiquitin 85.0 0.4 8.8E-06 49.1 1.2 39 631-676 161-200 (207)
99 KOG4362 Transcriptional regula 84.8 0.25 5.4E-06 58.3 -0.5 45 628-675 21-68 (684)
100 PF14446 Prok-RING_1: Prokaryo 84.7 1 2.3E-05 37.2 3.2 40 627-670 4-44 (54)
101 PF03854 zf-P11: P-11 zinc fin 84.5 0.27 5.8E-06 39.7 -0.2 32 645-676 14-46 (50)
102 KOG0825 PHD Zn-finger protein 83.7 0.64 1.4E-05 55.4 2.2 49 627-675 95-153 (1134)
103 KOG2817 Predicted E3 ubiquitin 79.7 1.3 2.8E-05 49.3 2.7 47 629-675 335-384 (394)
104 KOG2066 Vacuolar assembly/sort 79.3 0.77 1.7E-05 54.8 0.8 44 627-671 783-830 (846)
105 PF13901 DUF4206: Domain of un 77.9 3.1 6.7E-05 42.4 4.6 42 627-673 151-197 (202)
106 PF02891 zf-MIZ: MIZ/SP-RING z 76.1 2.5 5.5E-05 34.0 2.7 43 629-674 3-50 (50)
107 KOG1815 Predicted E3 ubiquitin 72.7 2.4 5.3E-05 47.9 2.5 37 626-664 68-104 (444)
108 KOG3161 Predicted E3 ubiquitin 72.5 1.3 2.9E-05 51.8 0.4 40 628-669 11-51 (861)
109 KOG3899 Uncharacterized conser 72.1 2.4 5.2E-05 45.8 2.1 27 649-675 325-364 (381)
110 KOG2807 RNA polymerase II tran 69.3 4.3 9.2E-05 44.5 3.3 49 626-674 328-376 (378)
111 KOG1812 Predicted E3 ubiquitin 67.7 7 0.00015 43.7 4.7 42 629-671 307-351 (384)
112 KOG0269 WD40 repeat-containing 65.6 4.7 0.0001 48.3 2.9 41 629-670 780-820 (839)
113 KOG3005 GIY-YIG type nuclease 65.1 3.4 7.4E-05 44.1 1.6 47 629-675 183-242 (276)
114 KOG4718 Non-SMC (structural ma 64.7 3 6.4E-05 43.3 1.0 44 627-672 180-223 (235)
115 KOG3579 Predicted E3 ubiquitin 64.3 2.9 6.3E-05 45.0 0.9 36 628-666 268-307 (352)
116 KOG3039 Uncharacterized conser 63.4 4.6 0.0001 42.8 2.1 34 627-663 42-75 (303)
117 KOG0802 E3 ubiquitin ligase [P 62.2 3.2 7E-05 48.1 0.8 44 625-675 476-519 (543)
118 KOG3842 Adaptor protein Pellin 60.1 7.7 0.00017 42.5 3.1 52 624-675 337-413 (429)
119 KOG2169 Zn-finger transcriptio 58.5 11 0.00025 44.7 4.5 87 582-675 258-355 (636)
120 smart00249 PHD PHD zinc finger 55.3 7.8 0.00017 28.6 1.6 32 630-661 1-32 (47)
121 KOG0824 Predicted E3 ubiquitin 53.1 4.4 9.4E-05 44.0 -0.1 51 624-677 101-152 (324)
122 KOG2068 MOT2 transcription fac 52.2 9.5 0.00021 41.9 2.3 49 628-676 249-298 (327)
123 TIGR00622 ssl1 transcription f 47.2 21 0.00046 33.7 3.4 46 628-673 55-111 (112)
124 COG5109 Uncharacterized conser 44.4 15 0.00032 40.4 2.2 45 629-673 337-384 (396)
125 PF04710 Pellino: Pellino; In 43.8 7.6 0.00017 43.6 0.0 49 628-676 328-401 (416)
126 smart00132 LIM Zinc-binding do 43.6 21 0.00045 25.4 2.3 38 630-676 1-38 (39)
127 PF10235 Cript: Microtubule-as 43.2 14 0.0003 33.7 1.5 39 628-678 44-82 (90)
128 PF04710 Pellino: Pellino; In 42.9 8.1 0.00018 43.4 0.0 28 644-674 304-337 (416)
129 KOG3113 Uncharacterized conser 39.4 27 0.00058 37.4 3.1 47 628-676 111-158 (293)
130 KOG2071 mRNA cleavage and poly 38.7 17 0.00037 42.7 1.7 36 626-661 511-556 (579)
131 PLN02189 cellulose synthase 38.7 26 0.00056 43.9 3.3 49 627-675 33-86 (1040)
132 PF06906 DUF1272: Protein of u 37.8 49 0.0011 27.9 3.7 44 630-677 7-53 (57)
133 PLN02638 cellulose synthase A 37.0 31 0.00067 43.4 3.7 49 627-675 16-69 (1079)
134 PF00628 PHD: PHD-finger; Int 35.1 14 0.00031 28.7 0.3 44 630-673 1-50 (51)
135 PLN02436 cellulose synthase A 34.5 33 0.00071 43.2 3.3 49 627-675 35-88 (1094)
136 KOG4185 Predicted E3 ubiquitin 34.3 9.6 0.00021 40.3 -1.0 48 627-674 206-265 (296)
137 PF06844 DUF1244: Protein of u 33.2 25 0.00055 30.4 1.5 11 653-663 12-22 (68)
138 PLN02400 cellulose synthase 30.4 31 0.00067 43.5 2.2 49 627-675 35-88 (1085)
139 KOG3726 Uncharacterized conser 30.2 23 0.0005 42.3 1.1 42 628-672 654-696 (717)
140 PF13717 zinc_ribbon_4: zinc-r 30.1 21 0.00046 26.9 0.5 25 630-654 4-36 (36)
141 PF05605 zf-Di19: Drought indu 29.8 27 0.00059 28.1 1.1 38 628-675 2-41 (54)
142 PF07975 C1_4: TFIIH C1-like d 29.7 24 0.00051 29.0 0.7 42 631-672 2-50 (51)
143 KOG1245 Chromatin remodeling c 29.6 20 0.00042 46.5 0.4 34 630-663 1110-1143(1404)
144 PF14569 zf-UDP: Zinc-binding 29.4 46 0.001 29.7 2.5 49 627-675 8-61 (80)
145 PF10571 UPF0547: Uncharacteri 29.4 26 0.00057 24.8 0.8 22 630-653 2-24 (26)
146 COG5574 PEX10 RING-finger-cont 29.2 79 0.0017 34.1 4.6 39 625-663 92-132 (271)
147 KOG2979 Protein involved in DN 28.7 30 0.00064 37.0 1.4 43 628-672 176-220 (262)
148 PF07191 zinc-ribbons_6: zinc- 27.1 4.7 0.0001 35.1 -3.9 39 629-675 2-40 (70)
149 KOG0956 PHD finger protein AF1 27.1 15 0.00032 44.0 -1.2 46 628-673 117-179 (900)
150 COG5151 SSL1 RNA polymerase II 26.9 67 0.0015 35.5 3.7 52 623-674 357-419 (421)
151 PLN02915 cellulose synthase A 25.8 76 0.0016 40.0 4.3 51 625-675 12-67 (1044)
152 PLN02248 cellulose synthase-li 24.2 51 0.0011 41.7 2.5 49 627-675 123-176 (1135)
153 PF07649 C1_3: C1-like domain; 23.3 53 0.0011 23.4 1.5 29 630-658 2-30 (30)
154 KOG4323 Polycomb-like PHD Zn-f 22.5 29 0.00064 39.9 0.1 46 628-673 168-223 (464)
155 PF13719 zinc_ribbon_5: zinc-r 22.4 34 0.00075 25.8 0.4 25 630-654 4-36 (37)
156 KOG1815 Predicted E3 ubiquitin 22.4 25 0.00053 40.0 -0.6 38 628-665 226-268 (444)
157 KOG1729 FYVE finger containing 22.4 14 0.0003 40.1 -2.4 38 628-665 214-251 (288)
158 COG0068 HypF Hydrogenase matur 22.1 37 0.00081 41.0 0.8 48 626-673 99-181 (750)
159 PF00412 LIM: LIM domain; Int 21.9 50 0.0011 26.0 1.3 11 630-640 28-38 (58)
160 PF04216 FdhE: Protein involve 21.6 16 0.00035 38.9 -2.1 48 627-674 171-220 (290)
161 PF01363 FYVE: FYVE zinc finge 21.5 29 0.00063 28.8 -0.2 37 626-662 7-44 (69)
162 cd00350 rubredoxin_like Rubred 21.0 43 0.00092 24.6 0.6 21 648-674 6-26 (33)
163 cd00065 FYVE FYVE domain; Zinc 20.6 65 0.0014 25.5 1.7 35 629-663 3-38 (57)
164 KOG3842 Adaptor protein Pellin 20.5 49 0.0011 36.5 1.2 29 643-674 316-350 (429)
165 KOG1842 FYVE finger-containing 20.5 46 0.00099 38.2 1.0 37 624-660 176-213 (505)
166 KOG1356 Putative transcription 20.3 30 0.00065 42.3 -0.4 35 627-662 228-262 (889)
167 KOG2113 Predicted RNA binding 20.3 68 0.0015 35.4 2.2 45 626-675 341-386 (394)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.2e-13 Score=147.75 Aligned_cols=49 Identities=49% Similarity=1.129 Sum_probs=45.3
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCC-CCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNL-CPICKTTGLP 677 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~s-CPICR~~llp 677 (678)
..|+||+|+|+.+|+++.|||+|.||..||++||.+.++ ||+||+.+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 689999999999999999999999999999999998755 9999997653
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.38 E-value=1.5e-13 Score=105.58 Aligned_cols=44 Identities=50% Similarity=1.238 Sum_probs=40.6
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 672 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR 672 (678)
+.|+||+++|..++.++.|+|+|+||.+||.+|++.+..||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 36999999999999999999999999999999999999999997
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.8e-11 Score=124.58 Aligned_cols=51 Identities=37% Similarity=1.002 Sum_probs=47.6
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHH-cCCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGLP 677 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~-~k~sCPICR~~llp 677 (678)
...+|+|||+.|...|+++.|||.|.||..||++|+. .++.||+||.++.|
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3478999999999999999999999999999999999 78899999999876
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.08 E-value=7.5e-11 Score=100.64 Aligned_cols=47 Identities=43% Similarity=0.960 Sum_probs=37.7
Q ss_pred CCCCccccccccccCC----------CceEEeCCCChhcHHHHHHHHHcCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDG----------DNLGILDCGHDFHTNCIKQWLMQKNLCPICK 672 (678)
Q Consensus 626 ~e~e~C~ICLEefe~g----------d~V~~LpCGHvFH~~CI~qWL~~k~sCPICR 672 (678)
..++.|+||++++.+. ..+...+|||.||..||.+||+.+.+||+||
T Consensus 17 ~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 17 IADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3455699999999432 2355668999999999999999999999998
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.08 E-value=1.1e-10 Score=120.00 Aligned_cols=51 Identities=41% Similarity=0.957 Sum_probs=42.1
Q ss_pred CCCCccccccccccCCCc----eEEe-CCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDN----LGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~----V~~L-pCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
..+.+|+||++.+..++. ++.+ +|+|.||..||.+|++.+.+||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 456789999999876431 2344 79999999999999999999999998764
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.2e-10 Score=124.26 Aligned_cols=52 Identities=33% Similarity=0.902 Sum_probs=44.3
Q ss_pred CCCCCCcccccccc-ccCCC---------ceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEE-YTDGD---------NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 675 (678)
Q Consensus 624 ~~~e~e~C~ICLEe-fe~gd---------~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~l 675 (678)
...++..|.||+|+ +..+. ..++|||||+||.+|++.|++++.+||+||.++
T Consensus 283 l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 283 LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred hcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 45677899999999 44332 247899999999999999999999999999985
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.3e-10 Score=120.89 Aligned_cols=52 Identities=33% Similarity=0.820 Sum_probs=46.3
Q ss_pred CCCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLPT 678 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~llpT 678 (678)
.......|.||||...++ ..+||||+||+.||..|+..+..||+||....|.
T Consensus 235 i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 344567899999999888 8999999999999999999999999999988763
No 8
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=5.3e-10 Score=113.54 Aligned_cols=49 Identities=33% Similarity=0.639 Sum_probs=42.3
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHc---CCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ---KNLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~---k~sCPICR~~ll 676 (678)
.....+|.||||.-+++ +++.|||+||+-||.+||.. ++.||+||..+.
T Consensus 44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 45567899999998888 88889999999999999994 556999998764
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.92 E-value=1e-09 Score=109.42 Aligned_cols=48 Identities=31% Similarity=0.721 Sum_probs=40.6
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHc----------------CCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ----------------KNLCPICKTTGL 676 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~----------------k~sCPICR~~ll 676 (678)
.++.+|+||++.++++ +.++|||.||+.||.+|+.. +..||+||..+.
T Consensus 16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 3467899999999877 77899999999999999862 346999999874
No 10
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.7e-09 Score=106.16 Aligned_cols=56 Identities=27% Similarity=0.519 Sum_probs=46.0
Q ss_pred cccCCCCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 620 LEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 620 ~e~e~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
...........|+|||+.+... ..+.++|||+||..||+.-++....||+|++.+.
T Consensus 123 v~~~~~~~~~~CPiCl~~~sek-~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 123 VDPLRKEGTYKCPICLDSVSEK-VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred ccccccccccCCCceecchhhc-cccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 3344555668999999999765 2255799999999999999999999999998763
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.80 E-value=4.8e-09 Score=77.89 Aligned_cols=44 Identities=45% Similarity=1.077 Sum_probs=36.6
Q ss_pred ccccccccccCCCceEEeCCCChhcHHHHHHHHHc-CCCCCCCCCCC
Q 005771 630 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTG 675 (678)
Q Consensus 630 ~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~-k~sCPICR~~l 675 (678)
.|+||++.+.. .+..++|||.||..|++.|++. ...||+||..+
T Consensus 1 ~C~iC~~~~~~--~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE--PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC--ceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 59999999833 3445569999999999999997 77899999864
No 12
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.79 E-value=3.2e-09 Score=83.79 Aligned_cols=46 Identities=39% Similarity=0.819 Sum_probs=39.6
Q ss_pred CCccccccccccCCCceEEeCCCCh-hcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHv-FH~~CI~qWL~~k~sCPICR~~ll 676 (678)
+..|.||++.... +..+||||. ||..|+.+|++.+..||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4689999998755 588899999 999999999999999999999874
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.76 E-value=4.1e-09 Score=79.28 Aligned_cols=39 Identities=38% Similarity=1.022 Sum_probs=33.8
Q ss_pred cccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCC
Q 005771 631 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 671 (678)
Q Consensus 631 C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPIC 671 (678)
|+||++.+.+. ++.++|||.||..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~~--~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP--VVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE--EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc--CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998774 5678999999999999999999999998
No 14
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=7e-09 Score=117.82 Aligned_cols=51 Identities=39% Similarity=0.922 Sum_probs=45.0
Q ss_pred CCCCccccccccccCCCc--eEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDN--LGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~--V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
..+..|+||+|++..++. ..+|+|+|+||..|++.||+++.+||+||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 447889999999998655 588999999999999999999999999998543
No 15
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.63 E-value=3.2e-08 Score=80.40 Aligned_cols=45 Identities=24% Similarity=0.411 Sum_probs=41.1
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
..|+||++.+.++ +.++|||+|+..||.+|++.+..||+|+..+.
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 4699999999987 78899999999999999999899999998763
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.63 E-value=2e-08 Score=101.90 Aligned_cols=51 Identities=37% Similarity=0.796 Sum_probs=39.0
Q ss_pred CCCCCccccccccccCC-----CceEEe-CCCChhcHHHHHHHHHcC------CCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDG-----DNLGIL-DCGHDFHTNCIKQWLMQK------NLCPICKTTG 675 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~g-----d~V~~L-pCGHvFH~~CI~qWL~~k------~sCPICR~~l 675 (678)
..++.+|+||+|..-.. ...+.| +|+|.||..||++|.+.+ ..||+||...
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 34568899999986432 123455 799999999999999853 4599999864
No 17
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.61 E-value=3.2e-08 Score=87.18 Aligned_cols=49 Identities=37% Similarity=0.950 Sum_probs=39.4
Q ss_pred CCCccccccccccC--------CC--ceEEeCCCChhcHHHHHHHHHc---CCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTD--------GD--NLGILDCGHDFHTNCIKQWLMQ---KNLCPICKTTG 675 (678)
Q Consensus 627 e~e~C~ICLEefe~--------gd--~V~~LpCGHvFH~~CI~qWL~~---k~sCPICR~~l 675 (678)
.++.|.||...|.. ++ .++.-.|+|.||..||.+||.. +..||+||++.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 47889999999882 11 2455579999999999999995 56899999864
No 18
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.60 E-value=2.2e-08 Score=77.13 Aligned_cols=38 Identities=34% Similarity=0.857 Sum_probs=30.8
Q ss_pred cccccccccCCCceEEeCCCChhcHHHHHHHHHcC----CCCCCC
Q 005771 631 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPIC 671 (678)
Q Consensus 631 C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k----~sCPIC 671 (678)
|+||++.|+++ +.|+|||.||..||..|++.. ..||+|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999998 899999999999999999854 359998
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.56 E-value=5.7e-08 Score=75.07 Aligned_cols=44 Identities=34% Similarity=0.835 Sum_probs=38.2
Q ss_pred ccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCC
Q 005771 630 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 673 (678)
Q Consensus 630 ~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~ 673 (678)
.|.||++.|........|+|||+||..||..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999955556788899999999999999866778999985
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.53 E-value=9.8e-08 Score=68.40 Aligned_cols=38 Identities=50% Similarity=1.196 Sum_probs=32.9
Q ss_pred cccccccccCCCceEEeCCCChhcHHHHHHHHH-cCCCCCCC
Q 005771 631 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPIC 671 (678)
Q Consensus 631 C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~-~k~sCPIC 671 (678)
|+||++... .+..++|+|.||..||+.|++ .+..||+|
T Consensus 1 C~iC~~~~~---~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK---DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCC---CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 889999843 358889999999999999999 66679998
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.50 E-value=6.5e-08 Score=106.11 Aligned_cols=49 Identities=24% Similarity=0.665 Sum_probs=43.0
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
......|.||++.|..+ +.++|||.||..||..|+..+..||+||..+.
T Consensus 23 Le~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~ 71 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ 71 (397)
T ss_pred cccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence 34567899999999877 67899999999999999999889999998764
No 22
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.3e-08 Score=100.77 Aligned_cols=49 Identities=31% Similarity=0.721 Sum_probs=44.1
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHH-HHHcCCC-CCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQ-WLMQKNL-CPICKTTGLP 677 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~q-WL~~k~s-CPICR~~llp 677 (678)
..+.+|.||++..... ..++|||+||+.||.. |-+++.. ||+||+.+.|
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 4578899999998887 8999999999999999 9888877 9999998776
No 23
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.50 E-value=6.1e-08 Score=72.98 Aligned_cols=39 Identities=41% Similarity=1.128 Sum_probs=34.1
Q ss_pred cccccccccCCCceEEeCCCChhcHHHHHHHHH--cCCCCCCC
Q 005771 631 CCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM--QKNLCPIC 671 (678)
Q Consensus 631 C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~--~k~sCPIC 671 (678)
|+||++.+... +..++|||.||..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998877 24789999999999999999 45569998
No 24
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.29 E-value=6.6e-07 Score=77.85 Aligned_cols=32 Identities=38% Similarity=0.798 Sum_probs=28.2
Q ss_pred eEEeCCCChhcHHHHHHHHHcCCCCCCCCCCC
Q 005771 644 LGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 675 (678)
Q Consensus 644 V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~l 675 (678)
++.-.|.|.||..||.+||..++.||+||++.
T Consensus 49 v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred EEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 34447999999999999999999999999864
No 25
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=5.4e-07 Score=100.29 Aligned_cols=47 Identities=34% Similarity=0.596 Sum_probs=39.5
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHHcC-----CCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-----NLCPICKTTGLP 677 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k-----~sCPICR~~llp 677 (678)
+..|+||+++...+ ..+.|||+||..||.+++... ..||+||..+.+
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 67899999998887 566799999999999998743 459999987754
No 26
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6.5e-07 Score=98.92 Aligned_cols=53 Identities=28% Similarity=0.684 Sum_probs=42.1
Q ss_pred CCCCCccccccccccCCCc--------------eEEeCCCChhcHHHHHHHHH-cCCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDN--------------LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGLP 677 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~--------------V~~LpCGHvFH~~CI~qWL~-~k~sCPICR~~llp 677 (678)
......|+|||.++..-.. ...+||.|+||..|+.+|+. .|-.||+||..+.|
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4456789999999873111 23459999999999999999 67799999998865
No 27
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.18 E-value=5.9e-07 Score=95.67 Aligned_cols=46 Identities=35% Similarity=0.635 Sum_probs=42.5
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
-..|.||.|.|..+ ..+||+|.||.-||+.+|..+..||.|+.++.
T Consensus 23 lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 23 LLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT 68 (442)
T ss_pred HHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccc
Confidence 45799999999998 88899999999999999999999999998764
No 28
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.10 E-value=1.3e-06 Score=91.42 Aligned_cols=45 Identities=29% Similarity=0.696 Sum_probs=41.3
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 674 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ 674 (678)
....|-||-+.|..+ ..++|||.||.-||+..|..+..||+||..
T Consensus 24 s~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~ 68 (391)
T COG5432 24 SMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCRED 68 (391)
T ss_pred hHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCcccccc
Confidence 346799999999998 788999999999999999999999999975
No 29
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=7.8e-07 Score=92.38 Aligned_cols=52 Identities=31% Similarity=0.701 Sum_probs=43.3
Q ss_pred CCCCCccccccccccCCC-------ceEEeCCCChhcHHHHHHHHH--cCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGD-------NLGILDCGHDFHTNCIKQWLM--QKNLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd-------~V~~LpCGHvFH~~CI~qWL~--~k~sCPICR~~ll 676 (678)
..++..|+||-..+.... .+.+|.|+|+||..||+-|.. .|.+||.||.++.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 345678999999887655 578899999999999999965 6789999998763
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.05 E-value=2e-06 Score=73.32 Aligned_cols=46 Identities=30% Similarity=0.436 Sum_probs=37.7
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHHc-CCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~-k~sCPICR~~ll 676 (678)
...|+||.+-+.++ +.++|||.|...||..||+. ...||+|+..+.
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp GGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred ccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 46799999999998 88999999999999999998 889999998764
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.7e-06 Score=85.34 Aligned_cols=45 Identities=31% Similarity=0.775 Sum_probs=40.0
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 672 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR 672 (678)
..+...|+||++.|..+ ..++|+|.||..||..|+.....||.||
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccC
Confidence 34567899999999998 8889999999999999998556799999
No 32
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.02 E-value=2.6e-06 Score=66.33 Aligned_cols=38 Identities=32% Similarity=0.833 Sum_probs=22.6
Q ss_pred cccccccccCCC-ceEEeCCCChhcHHHHHHHHHcC----CCCC
Q 005771 631 CCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQK----NLCP 669 (678)
Q Consensus 631 C~ICLEefe~gd-~V~~LpCGHvFH~~CI~qWL~~k----~sCP 669 (678)
|+||.| |...+ ..+.|+|||+||.+||.+|++.. ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 76633 34778999999999999999953 3476
No 33
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.99 E-value=6.8e-06 Score=65.51 Aligned_cols=42 Identities=29% Similarity=0.795 Sum_probs=33.1
Q ss_pred ccccccccccCCCceEEeCCC-----ChhcHHHHHHHHHcC--CCCCCCC
Q 005771 630 PCCICQEEYTDGDNLGILDCG-----HDFHTNCIKQWLMQK--NLCPICK 672 (678)
Q Consensus 630 ~C~ICLEefe~gd~V~~LpCG-----HvFH~~CI~qWL~~k--~sCPICR 672 (678)
.|.||++ ...++....+||. |.||..|+.+|+..+ ..||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4999999 3444455577885 899999999999754 4799996
No 34
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=2.7e-06 Score=73.55 Aligned_cols=52 Identities=37% Similarity=0.845 Sum_probs=39.2
Q ss_pred CCCCCCccccccccccC--------CCc--eEEeCCCChhcHHHHHHHHHc---CCCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTD--------GDN--LGILDCGHDFHTNCIKQWLMQ---KNLCPICKTTG 675 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~--------gd~--V~~LpCGHvFH~~CI~qWL~~---k~sCPICR~~l 675 (678)
....++.|.||...|.. +|. ++.-.|.|.||..||.+|+.. +..||+||++.
T Consensus 16 W~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 16 WDAPDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred EcCCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 44556799999999973 222 222269999999999999985 45699999864
No 35
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.84 E-value=3.5e-06 Score=71.70 Aligned_cols=48 Identities=29% Similarity=0.771 Sum_probs=23.0
Q ss_pred CCccccccccccCCCce---EEe--CCCChhcHHHHHHHHHc----C-------CCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNL---GIL--DCGHDFHTNCIKQWLMQ----K-------NLCPICKTTG 675 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V---~~L--pCGHvFH~~CI~qWL~~----k-------~sCPICR~~l 675 (678)
+.+|.||++.+...+++ +.- .|++.||..||.+||.. + ..||.|++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 45799999997633322 222 59999999999999983 1 1399999876
No 36
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.1e-05 Score=86.75 Aligned_cols=49 Identities=33% Similarity=0.638 Sum_probs=42.7
Q ss_pred CCCCccccccccccCCCceEEeCCCCh-hcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHv-FH~~CI~qWL~~k~sCPICR~~llp 677 (678)
+..++|.|||.+.++- ..|||-|+ .|..|.+...-+.+.||+||+.+..
T Consensus 288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 3467899999998775 89999999 7999999987789999999998754
No 37
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.74 E-value=7.2e-06 Score=96.03 Aligned_cols=52 Identities=29% Similarity=0.699 Sum_probs=39.4
Q ss_pred CCCCCccccccccccCCCc----eEEeCCCChhcHHHHHHHHHc--CCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDN----LGILDCGHDFHTNCIKQWLMQ--KNLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~----V~~LpCGHvFH~~CI~qWL~~--k~sCPICR~~ll 676 (678)
..+.++|+||+.-+..-|. -++-.|+|.||..|+.+|++. ...||+||.++.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 4567899999987662111 234469999999999999995 567999998763
No 38
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=2e-05 Score=71.76 Aligned_cols=52 Identities=27% Similarity=0.699 Sum_probs=38.4
Q ss_pred CCCCCCCcccccccccc-------------CCC-ceEEeCCCChhcHHHHHHHHHcCCCCCCCCCC
Q 005771 623 EIPSDEEPCCICQEEYT-------------DGD-NLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 674 (678)
Q Consensus 623 e~~~e~e~C~ICLEefe-------------~gd-~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ 674 (678)
..+...+.|+||.-.+. .++ .+.--.|.|.||..||.+||+.++.||+|.++
T Consensus 41 aWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 41 AWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 34556678888865443 111 23333799999999999999999999999875
No 39
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=3.8e-05 Score=83.30 Aligned_cols=50 Identities=40% Similarity=0.988 Sum_probs=38.6
Q ss_pred CCCCccccccccccCCC----ceEEe-CCCChhcHHHHHHHHH--c-----CCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGD----NLGIL-DCGHDFHTNCIKQWLM--Q-----KNLCPICKTTG 675 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd----~V~~L-pCGHvFH~~CI~qWL~--~-----k~sCPICR~~l 675 (678)
..+++|.||+|.+.+.. ..+.| +|.|.||..||+.|-. + .+.||+||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45788999999987642 13344 4999999999999984 4 46799999753
No 40
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=1.5e-05 Score=85.64 Aligned_cols=47 Identities=28% Similarity=0.518 Sum_probs=39.3
Q ss_pred CCCccccccccccCCCceEEe-CCCChhcHHHHHHHHHc-CCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~-k~sCPICR~~ll 676 (678)
.+..|+|||+-++.. ..+ .|.|.||..||..-|+. .+.||.||+.+.
T Consensus 42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 456899999998776 444 59999999999999885 678999999775
No 41
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=3.6e-05 Score=62.95 Aligned_cols=46 Identities=28% Similarity=0.605 Sum_probs=36.8
Q ss_pred CCccccccccccCCCceEEeCCCCh-hcHHHHHHHHH-cCCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLM-QKNLCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHv-FH~~CI~qWL~-~k~sCPICR~~ll 676 (678)
..+|.||+|...+. +...|||+ .|.+|-.+.++ .+..||+||+++.
T Consensus 7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 37899999987765 45589999 79999766555 7889999999763
No 42
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.43 E-value=2.5e-05 Score=90.30 Aligned_cols=51 Identities=20% Similarity=0.349 Sum_probs=44.8
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
.....|+||+..+.+.......+|+|+||..||..|-+.-.+||+||....
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence 345789999999998866677789999999999999999999999998654
No 43
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.33 E-value=0.00011 Score=77.73 Aligned_cols=53 Identities=21% Similarity=0.621 Sum_probs=43.8
Q ss_pred CCCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHH-----------------------cCCCCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-----------------------QKNLCPICKTTGL 676 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~-----------------------~k~sCPICR~~ll 676 (678)
.....-.|.|||--|..++.+.+++|-|.||..|+..+|. .+..||+||..+.
T Consensus 111 nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 111 NNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 3445567999999999999999999999999999988774 1225999998764
No 44
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=7.4e-05 Score=86.90 Aligned_cols=48 Identities=25% Similarity=0.664 Sum_probs=40.0
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHH-cCCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGLP 677 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~-~k~sCPICR~~llp 677 (678)
....|++|-..+++. +.+.|+|+||..||..-+. ++..||.|-+..-+
T Consensus 642 ~~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 346799999877765 7778999999999999998 57889999886543
No 45
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.13 E-value=0.00018 Score=79.55 Aligned_cols=51 Identities=25% Similarity=0.780 Sum_probs=39.3
Q ss_pred CCCCCccccccccccCCCc-eEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~-V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~llp 677 (678)
..+.-+|+||||.+..... +..+.|.|.||-.|+..|. ..+||+||....|
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~p 223 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQSP 223 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcCc
Confidence 3455689999999875432 3555799999999999994 4679999986543
No 46
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00036 Score=77.24 Aligned_cols=48 Identities=29% Similarity=0.765 Sum_probs=42.8
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
..+..|+||+.-+..+ +.+||||.||..||.+-+.+...||+||..+.
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccc
Confidence 5667899999998888 78899999999999998888889999999775
No 47
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.01 E-value=0.00013 Score=61.50 Aligned_cols=44 Identities=27% Similarity=0.708 Sum_probs=23.2
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
..|.+|.+.++.+ +....|.|+||..||.+-+. ..||+|+.++-
T Consensus 8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 4699999999887 33347999999999988554 34999998763
No 48
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00062 Score=73.53 Aligned_cols=49 Identities=33% Similarity=0.571 Sum_probs=42.9
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
..++..|+||+..-... +..||+|.-|+.||.+.|...+.|=.||.++.
T Consensus 419 ~sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CcccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 46778899999876555 67799999999999999999999999999764
No 49
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.79 E-value=0.00056 Score=56.34 Aligned_cols=43 Identities=26% Similarity=0.600 Sum_probs=29.3
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHc--CCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--KNLCPI 670 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~--k~sCPI 670 (678)
.....|+|.+..|+++ +....|||+|-++.|.+||.. ...||+
T Consensus 9 ~~~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3457899999999887 556689999999999999954 445999
No 50
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.78 E-value=0.00083 Score=81.71 Aligned_cols=51 Identities=33% Similarity=0.651 Sum_probs=41.7
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC----------CCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----------LCPICKTTG 675 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~----------sCPICR~~l 675 (678)
...++.|.||+-+--.......|.|+|+||..|.+.-|+++- .||+|+.++
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 345678999998877666678999999999999998887532 499999876
No 51
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.76 E-value=0.0005 Score=75.16 Aligned_cols=46 Identities=33% Similarity=0.742 Sum_probs=37.6
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHc--CCCCCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--KNLCPICKTTGLP 677 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~--k~sCPICR~~llp 677 (678)
+.|-||-|.- +.|..-||||+.|..|+..|-.. ...||.||.++.-
T Consensus 370 eLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 5699999863 34566699999999999999864 5689999998764
No 52
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0014 Score=68.99 Aligned_cols=53 Identities=26% Similarity=0.482 Sum_probs=42.4
Q ss_pred CCCCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHc--CCCCCCCCCCCCC
Q 005771 623 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--KNLCPICKTTGLP 677 (678)
Q Consensus 623 e~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~--k~sCPICR~~llp 677 (678)
.....+.+|++|.+.-..+ ....+|+|+||..||..-+.- ..+||.|-..+.+
T Consensus 234 s~~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred ccccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 3455678899999998887 344579999999999987764 4789999887763
No 53
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.00058 Score=72.25 Aligned_cols=41 Identities=39% Similarity=0.769 Sum_probs=33.9
Q ss_pred CCccccccccccCCCceEEeCCCCh-hcHHHHHHHHHcCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTG 675 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHv-FH~~CI~qWL~~k~sCPICR~~l 675 (678)
...|.||++...+. +.|+|||. -|..|-+. -+.|||||+.+
T Consensus 300 ~~LC~ICmDaP~DC---vfLeCGHmVtCt~CGkr----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDC---VFLECGHMVTCTKCGKR----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcce---EEeecCcEEeehhhccc----cccCchHHHHH
Confidence 67899999998877 89999998 48888654 34899999865
No 54
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0013 Score=72.41 Aligned_cols=48 Identities=31% Similarity=0.600 Sum_probs=39.6
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHHc--------CCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--------KNLCPICKTT 674 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~--------k~sCPICR~~ 674 (678)
....|.||+++....+-+..|||+|+||+.|++.++.. .-.||-|+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 34689999999888788999999999999999999873 2248877653
No 55
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.57 E-value=0.00099 Score=73.63 Aligned_cols=49 Identities=27% Similarity=0.602 Sum_probs=42.9
Q ss_pred CCCCCccccccccccCCCceEE-eCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~-LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
...+..|+||...+.++ .. +.|||.||..||..|+..+..||.|+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p---~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDP---VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCC---CCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 45568899999999988 44 589999999999999999999999988764
No 56
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.37 E-value=0.0013 Score=71.92 Aligned_cols=46 Identities=33% Similarity=0.725 Sum_probs=38.8
Q ss_pred CCccccccccccCC-CceEEeCCCChhcHHHHHHHHHcC--CCCCCCCC
Q 005771 628 EEPCCICQEEYTDG-DNLGILDCGHDFHTNCIKQWLMQK--NLCPICKT 673 (678)
Q Consensus 628 ~e~C~ICLEefe~g-d~V~~LpCGHvFH~~CI~qWL~~k--~sCPICR~ 673 (678)
+..|..|=|.|... +.+-.|||.|+||..|+...|+++ .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 45699999998864 457888999999999999999864 46999994
No 57
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.24 E-value=0.0014 Score=70.46 Aligned_cols=49 Identities=27% Similarity=0.623 Sum_probs=41.1
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 675 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~l 675 (678)
......|.+|-..|.+. .....|-|.||+.||.+.|...+.||.|...+
T Consensus 12 ~n~~itC~LC~GYliDA--TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDA--TTITECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred cccceehhhccceeecc--hhHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 34567899999999886 23346999999999999999999999998754
No 58
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.11 E-value=0.0029 Score=64.01 Aligned_cols=44 Identities=25% Similarity=0.681 Sum_probs=39.2
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 674 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ 674 (678)
...|.||.++|+.+ +.+.|||.||..|.-.-++....|-+|-+.
T Consensus 196 PF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred ceeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 35799999999988 888999999999999888888899999764
No 59
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.99 E-value=0.0032 Score=71.05 Aligned_cols=49 Identities=27% Similarity=0.573 Sum_probs=39.5
Q ss_pred CCCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHH-----cCCCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-----QKNLCPICKTTG 675 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~-----~k~sCPICR~~l 675 (678)
.......|.+|.++-++. ....|.|+||.-||+.++. ..-+||+|-..+
T Consensus 532 enk~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred cccCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 345567899999987665 7788999999999999987 245799997654
No 60
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.0064 Score=71.93 Aligned_cols=43 Identities=23% Similarity=0.692 Sum_probs=35.7
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 674 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ 674 (678)
...+|.+|--.+..+ ++...|||.||.+|+. .....||.|+.+
T Consensus 839 q~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeeeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchh
Confidence 446899999998877 6777899999999998 345679999874
No 61
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.0031 Score=61.99 Aligned_cols=32 Identities=31% Similarity=0.706 Sum_probs=28.5
Q ss_pred CCCCCCccccccccccCCCceEEeCCCChhcH
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHT 655 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~ 655 (678)
...+.-+|.||||+++.++.+..|||-.+||+
T Consensus 173 L~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 173 LKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred hcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 44556789999999999999999999999996
No 62
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.0095 Score=62.09 Aligned_cols=50 Identities=14% Similarity=0.334 Sum_probs=44.5
Q ss_pred CCCccccccccccCCCceEEe-CCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
....|+||.+.+.+......| +|||+|+.+|+.+.+.....||+|-.++.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 457899999999988777777 79999999999999999999999988764
No 63
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.006 Score=66.34 Aligned_cols=44 Identities=23% Similarity=0.585 Sum_probs=32.4
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 675 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~l 675 (678)
.....|.||+++.... ..+||||+-| |..--. .-..||+||+.+
T Consensus 303 ~~p~lcVVcl~e~~~~---~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI 346 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSA---VFVPCGHVCC--CTLCSK-HLPQCPVCRQRI 346 (355)
T ss_pred CCCCceEEecCCccce---eeecCCcEEE--chHHHh-hCCCCchhHHHH
Confidence 3456799999998775 8899999976 554432 234499999865
No 64
>PHA03096 p28-like protein; Provisional
Probab=95.54 E-value=0.0069 Score=64.61 Aligned_cols=45 Identities=33% Similarity=0.667 Sum_probs=33.5
Q ss_pred CccccccccccCC----CceEEeC-CCChhcHHHHHHHHHc---CCCCCCCCC
Q 005771 629 EPCCICQEEYTDG----DNLGILD-CGHDFHTNCIKQWLMQ---KNLCPICKT 673 (678)
Q Consensus 629 e~C~ICLEefe~g----d~V~~Lp-CGHvFH~~CI~qWL~~---k~sCPICR~ 673 (678)
..|.||++..... ..-+.|+ |.|.||..||+.|-.. +..||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 6799999987743 2345664 9999999999999874 344555554
No 65
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.012 Score=60.74 Aligned_cols=48 Identities=29% Similarity=0.662 Sum_probs=39.4
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHc--------CCCCCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--------KNLCPICKTTGLP 677 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~--------k~sCPICR~~llp 677 (678)
-.|.+|--.+..+| ...|.|-|+||++|+..|-.. ...||-|..++.|
T Consensus 51 pNC~LC~t~La~gd-t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLASGD-TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCccccCc-ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 46999988888775 457789999999999999774 2349999999876
No 66
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.0058 Score=64.98 Aligned_cols=45 Identities=22% Similarity=0.530 Sum_probs=40.1
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 675 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~l 675 (678)
...|-||..+|..+ +++.|+|.||..|...-++....|.+|-+..
T Consensus 241 Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccc
Confidence 35699999999998 8899999999999999888889999997754
No 67
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.41 E-value=0.0086 Score=63.76 Aligned_cols=42 Identities=29% Similarity=0.627 Sum_probs=35.2
Q ss_pred CccccccccccCCCceEEeC-CCChhcHHHHHHHHH-cCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLM-QKNLCPICKT 673 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~Lp-CGHvFH~~CI~qWL~-~k~sCPICR~ 673 (678)
..|+.|..-+..+ ..++ |+|.||..||..-|. ....||.|-.
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 6899999988877 5565 899999999998876 4678999954
No 68
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.41 E-value=0.0046 Score=54.90 Aligned_cols=33 Identities=27% Similarity=0.779 Sum_probs=27.5
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHH
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIK 659 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~ 659 (678)
.....|.||-..+.. ......||||+||..|++
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 446779999999977 456777999999999985
No 69
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.10 E-value=0.019 Score=62.35 Aligned_cols=52 Identities=25% Similarity=0.555 Sum_probs=41.0
Q ss_pred cccCCCCCCCccccccccccCCCceEEeCCCChhcHHHHHHH--HHcCCCCCCCCCC
Q 005771 620 LEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW--LMQKNLCPICKTT 674 (678)
Q Consensus 620 ~e~e~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qW--L~~k~sCPICR~~ 674 (678)
..++.+++...|.||-+.+.- +..+||+|..|--|-... |-.++.||+||.+
T Consensus 53 SaddtDEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 53 SADDTDEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccccccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 334566777889999998754 478899999999998654 4468899999985
No 70
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.96 E-value=0.017 Score=55.43 Aligned_cols=37 Identities=24% Similarity=0.569 Sum_probs=30.0
Q ss_pred CCccccccccccCCCceEEeCCC------ChhcHHHHHHHHHc
Q 005771 628 EEPCCICQEEYTDGDNLGILDCG------HDFHTNCIKQWLMQ 664 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCG------HvFH~~CI~qWL~~ 664 (678)
..+|.||++.+...+-++.++|+ |+||.+|+++|-+.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 46899999999984446777776 99999999999443
No 71
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.94 E-value=0.016 Score=46.47 Aligned_cols=44 Identities=27% Similarity=0.692 Sum_probs=23.2
Q ss_pred cccccccccCCC-ceEEeCCCChhcHHHHHHHHH-cCCCCCCCCCC
Q 005771 631 CCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLM-QKNLCPICKTT 674 (678)
Q Consensus 631 C~ICLEefe~gd-~V~~LpCGHvFH~~CI~qWL~-~k~sCPICR~~ 674 (678)
|++|.+++...+ .+.--+||+.+|..|..+-++ ....||-||++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 789999994433 344447999999999888876 47789999985
No 72
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.86 E-value=0.029 Score=55.21 Aligned_cols=47 Identities=26% Similarity=0.678 Sum_probs=34.1
Q ss_pred CCCCCccccccccccCCCceEEeCCC--C---hhcHHHHHHHHHcC--CCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCG--H---DFHTNCIKQWLMQK--NLCPICKTTG 675 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCG--H---vFH~~CI~qWL~~k--~sCPICR~~l 675 (678)
...+..|-||.++... . .-||. . ..|..|+..|+..+ ..|++|+++.
T Consensus 5 s~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 5 SLMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence 3456789999998542 2 24654 4 56999999999964 4699998753
No 73
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.74 E-value=0.022 Score=67.57 Aligned_cols=47 Identities=34% Similarity=0.770 Sum_probs=35.9
Q ss_pred CCCccccccccccCCCceEEe-CCCChhcHHHHHHHHHcC--C-----CCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQK--N-----LCPICKT 673 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~k--~-----sCPICR~ 673 (678)
...+|.||++.+...+.+-.- .|-|+||..||++|-+.. . .||.|+.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 346899999999876544333 588999999999998741 1 2999984
No 74
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.41 E-value=0.041 Score=57.74 Aligned_cols=51 Identities=20% Similarity=0.462 Sum_probs=39.8
Q ss_pred CCCCCccccccccccCCCceEEe-CCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
......|+|+..+|......+.| +|||+|...||++- .....||+|-.+..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccc
Confidence 35567899999999665555555 89999999999997 23457999987653
No 75
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.27 E-value=0.025 Score=44.83 Aligned_cols=40 Identities=30% Similarity=0.798 Sum_probs=27.2
Q ss_pred cccccccccCCCceEEeCCC--C---hhcHHHHHHHHHc--CCCCCCC
Q 005771 631 CCICQEEYTDGDNLGILDCG--H---DFHTNCIKQWLMQ--KNLCPIC 671 (678)
Q Consensus 631 C~ICLEefe~gd~V~~LpCG--H---vFH~~CI~qWL~~--k~sCPIC 671 (678)
|-||++.-...+ ....||. = ..|..|+.+|+.. +..|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 789999977664 2345654 3 6799999999994 4569998
No 76
>PHA02862 5L protein; Provisional
Probab=94.21 E-value=0.039 Score=53.59 Aligned_cols=47 Identities=26% Similarity=0.604 Sum_probs=30.8
Q ss_pred CccccccccccCCCceEE-eCCCChhcHHHHHHHHH--cCCCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLM--QKNLCPICKTTG 675 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~-LpCGHvFH~~CI~qWL~--~k~sCPICR~~l 675 (678)
..|-||+++-++...... .---..-|.+|+.+|+. ++..|++||.+.
T Consensus 3 diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 579999998543300000 00024679999999998 456799999863
No 77
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.042 Score=59.41 Aligned_cols=50 Identities=22% Similarity=0.491 Sum_probs=40.5
Q ss_pred CCCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 675 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~l 675 (678)
...+...|+||+....++ .+...-|-+||..||...+...+.||+--.++
T Consensus 296 l~~~~~~CpvClk~r~Np--tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNP--TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCCccccChhHHhccCCC--ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 445567899999998887 23335799999999999999999999976554
No 78
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=0.023 Score=67.84 Aligned_cols=38 Identities=21% Similarity=0.590 Sum_probs=29.9
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHH
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM 663 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~ 663 (678)
....+.|.+|...+-.. .-...+|||.||++||.+-..
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcC-cceeeeccchHHHHHHHHHHH
Confidence 34567899999988654 455669999999999987654
No 79
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.0035 Score=68.64 Aligned_cols=50 Identities=26% Similarity=0.545 Sum_probs=43.7
Q ss_pred CCCccccccccccCC-CceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDG-DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~g-d~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
....|+||.+.|+.. +.+..+-|||.+|.+||.+||..+..||.|+.++.
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 346799999999876 56778889999999999999999999999998763
No 80
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.021 Score=61.23 Aligned_cols=44 Identities=20% Similarity=0.488 Sum_probs=31.3
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
-.|.-|--.+..- -+.+||+|+||.+|... ...+.||.|-.+|.
T Consensus 91 HfCd~Cd~PI~IY--GRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAIY--GRMIPCKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcceee--ecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence 3466676665542 25569999999999764 44678999987653
No 81
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.048 Score=54.63 Aligned_cols=48 Identities=31% Similarity=0.713 Sum_probs=34.2
Q ss_pred CCccccccccccCCCc---e-EEeCCCChhcHHHHHHHHHcC-----------CCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDN---L-GILDCGHDFHTNCIKQWLMQK-----------NLCPICKTTG 675 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~---V-~~LpCGHvFH~~CI~qWL~~k-----------~sCPICR~~l 675 (678)
...|.||+..--++.. + --..||.-||.-|+..||+.- ..||.|-+++
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 3468888876554432 2 123799999999999999821 1499998876
No 82
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.12 E-value=0.041 Score=45.35 Aligned_cols=46 Identities=37% Similarity=0.673 Sum_probs=35.5
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~llp 677 (678)
....|..|...-..+ ..++|||+.|..|..- ++-+-||+|-+++..
T Consensus 6 ~~~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKG---TVLPCGHLICDNCFPG--ERYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEcccccccc---ccccccceeeccccCh--hhccCCCCCCCcccC
Confidence 345788887775555 7889999999999654 466789999887753
No 83
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.79 E-value=0.042 Score=64.90 Aligned_cols=43 Identities=37% Similarity=0.864 Sum_probs=34.9
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHcC--CCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--NLCPICKTTG 675 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k--~sCPICR~~l 675 (678)
..|.||++ . +......|+|.||..|+.+-+... ..||+||..+
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 78999999 3 345788999999999999988753 2599999754
No 84
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=92.43 E-value=0.15 Score=59.15 Aligned_cols=44 Identities=23% Similarity=0.645 Sum_probs=29.4
Q ss_pred CCCCcccccccc-----ccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCC
Q 005771 626 SDEEPCCICQEE-----YTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 672 (678)
Q Consensus 626 ~e~e~C~ICLEe-----fe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR 672 (678)
.....|.||... |+......+..|+++||..|++. .+..||.|-
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred cCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 345678899543 22232345568999999999554 455599993
No 85
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.79 E-value=0.37 Score=53.22 Aligned_cols=27 Identities=26% Similarity=0.811 Sum_probs=21.1
Q ss_pred CCChhcHHHHHHHHHc-------------CCCCCCCCCCC
Q 005771 649 CGHDFHTNCIKQWLMQ-------------KNLCPICKTTG 675 (678)
Q Consensus 649 CGHvFH~~CI~qWL~~-------------k~sCPICR~~l 675 (678)
|.-++|.+|+.+|+.. +-.||.||++.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 5577899999999873 23599999863
No 86
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.56 E-value=0.057 Score=66.70 Aligned_cols=44 Identities=39% Similarity=0.899 Sum_probs=38.9
Q ss_pred CCCcccccccccc-CCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCC
Q 005771 627 DEEPCCICQEEYT-DGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 673 (678)
Q Consensus 627 e~e~C~ICLEefe-~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~ 673 (678)
....|.||++.+. .+ ....|||.||..|+..|+..+..||+|+.
T Consensus 1152 ~~~~c~ic~dil~~~~---~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG---GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcC---CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 3458999999998 44 67789999999999999999999999984
No 87
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.32 E-value=0.14 Score=55.64 Aligned_cols=49 Identities=22% Similarity=0.468 Sum_probs=34.3
Q ss_pred CCCccccccccccCCCc-eEEeCCCChhcHHHHHHHHH-cCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 675 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~-V~~LpCGHvFH~~CI~qWL~-~k~sCPICR~~l 675 (678)
+++.|++|+|++...|+ ..-.+||-..|.-|+..--+ ....||.||+..
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 34459999999987664 44558997777777554332 356799999753
No 88
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.67 E-value=0.13 Score=54.84 Aligned_cols=45 Identities=33% Similarity=0.776 Sum_probs=38.3
Q ss_pred CccccccccccCCCc-eEEeCCCChhcHHHHHHHHHcCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLMQKNLCPICKT 673 (678)
Q Consensus 629 e~C~ICLEefe~gd~-V~~LpCGHvFH~~CI~qWL~~k~sCPICR~ 673 (678)
..|+||.+.+..... +..++|||..|..|+.......-.||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 349999999876543 567799999999999998887888999988
No 89
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.88 E-value=0.21 Score=59.07 Aligned_cols=27 Identities=33% Similarity=0.749 Sum_probs=24.4
Q ss_pred eEEeCCCChhcHHHHHHHHHcCCCCCC
Q 005771 644 LGILDCGHDFHTNCIKQWLMQKNLCPI 670 (678)
Q Consensus 644 V~~LpCGHvFH~~CI~qWL~~k~sCPI 670 (678)
..+..|+|+.|..|++.|++....||.
T Consensus 1043 ~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1043 NFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhhccccccccHHHHHHHHhcCCcCCC
Confidence 456689999999999999999999985
No 90
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=88.49 E-value=0.36 Score=37.75 Aligned_cols=39 Identities=33% Similarity=0.865 Sum_probs=23.4
Q ss_pred cccccccccCCCceEEe--CCCChhcHHHHHHHHHcCC--CCCCC
Q 005771 631 CCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLMQKN--LCPIC 671 (678)
Q Consensus 631 C~ICLEefe~gd~V~~L--pCGHvFH~~CI~qWL~~k~--sCPIC 671 (678)
|.+|.+-...+ ++.- .|+=.+|..|+..+++.+. .||.|
T Consensus 1 C~~C~~iv~~G--~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQG--QRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSS--EE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeee--ccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67888888777 2222 4998999999999999655 69998
No 91
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=87.84 E-value=0.26 Score=51.61 Aligned_cols=49 Identities=31% Similarity=0.679 Sum_probs=35.6
Q ss_pred CCCccccccccccCCCc-eEEeCCC-----ChhcHHHHHHHHH--cCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDN-LGILDCG-----HDFHTNCIKQWLM--QKNLCPICKTTG 675 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~-V~~LpCG-----HvFH~~CI~qWL~--~k~sCPICR~~l 675 (678)
....|-||.++...... ....||. +..|..|+..|+. .+..|.+|+...
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~ 133 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF 133 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccc
Confidence 35789999998765422 2344654 5679999999999 455699998753
No 92
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.88 E-value=0.37 Score=50.47 Aligned_cols=46 Identities=22% Similarity=0.643 Sum_probs=34.8
Q ss_pred CCCccccccccccCCCceEEe--C-CCChhcHHHHHHHHHcC-CCCC--CCC
Q 005771 627 DEEPCCICQEEYTDGDNLGIL--D-CGHDFHTNCIKQWLMQK-NLCP--ICK 672 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~L--p-CGHvFH~~CI~qWL~~k-~sCP--ICR 672 (678)
.+..|+||..+.--.-.+..| | |-|..|..|++.-|... ..|| -|-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~ 60 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCG 60 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence 456899999885543344444 5 99999999999999875 4599 664
No 93
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.69 E-value=0.56 Score=55.99 Aligned_cols=50 Identities=28% Similarity=0.662 Sum_probs=36.7
Q ss_pred CCCCCccccccccccCCCceEEeCCCC-----hhcHHHHHHHHHc--CCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGH-----DFHTNCIKQWLMQ--KNLCPICKTTG 675 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGH-----vFH~~CI~qWL~~--k~sCPICR~~l 675 (678)
.+++..|.||..+=..++.+ .-||+. ..|.+|+.+|+.. +..|-+|+.+.
T Consensus 9 N~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred CccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 44568899999886555432 336653 4799999999994 45699999864
No 94
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.39 E-value=0.35 Score=51.01 Aligned_cols=52 Identities=27% Similarity=0.576 Sum_probs=35.8
Q ss_pred CCCCCCccccccccccCCCceEEe-CCC-----ChhcHHHHHHHHHcCC--------CCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGIL-DCG-----HDFHTNCIKQWLMQKN--------LCPICKTTG 675 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~L-pCG-----HvFH~~CI~qWL~~k~--------sCPICR~~l 675 (678)
..+.+..|=||+..=++.-.-... ||- |..|..||..|+..|. .||.|+.+-
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 344566788999875543211112 553 8899999999998654 399999863
No 95
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=86.24 E-value=0.97 Score=43.66 Aligned_cols=47 Identities=28% Similarity=0.596 Sum_probs=37.6
Q ss_pred CCCccccccccccCCCceEEe-C---CCChhcHHHHHHHHH---cCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGIL-D---CGHDFHTNCIKQWLM---QKNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~L-p---CGHvFH~~CI~qWL~---~k~sCPICR~~ll 676 (678)
...+|.||.|.-.+. ..| | ||-..|..|....++ ....||+||....
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 567899999998776 455 2 999999999887776 3667999998764
No 96
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.56 E-value=0.34 Score=53.93 Aligned_cols=39 Identities=38% Similarity=0.809 Sum_probs=29.5
Q ss_pred CCCccccccccccCC-CceEEeCCCChhcHHHHHHHHHcC
Q 005771 627 DEEPCCICQEEYTDG-DNLGILDCGHDFHTNCIKQWLMQK 665 (678)
Q Consensus 627 e~e~C~ICLEefe~g-d~V~~LpCGHvFH~~CI~qWL~~k 665 (678)
..++|.||+.+.... +....+.|+|.||.+|+++.++.+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 467899999544444 333456799999999999998854
No 97
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=85.44 E-value=0.57 Score=50.63 Aligned_cols=45 Identities=27% Similarity=0.535 Sum_probs=36.3
Q ss_pred CCCCCccccccccccCCCceEEeCC--CChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDC--GHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpC--GHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
..+-.+|+||.+.+..+ ..+| ||+-|..|-. +..+.||.||.++.
T Consensus 45 ~~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 34557899999999987 5666 7999999965 45778999998764
No 98
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.03 E-value=0.4 Score=49.14 Aligned_cols=39 Identities=28% Similarity=0.688 Sum_probs=29.1
Q ss_pred cccccccccCCCceEEeCCCCh-hcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 631 CCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 631 C~ICLEefe~gd~V~~LpCGHv-FH~~CI~qWL~~k~sCPICR~~ll 676 (678)
|.+|-+. +..|..+||-|+ +|..|=.. ...||+|+....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 8888775 334778899988 79999543 456999997653
No 99
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=84.82 E-value=0.25 Score=58.26 Aligned_cols=45 Identities=29% Similarity=0.658 Sum_probs=37.4
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC---CCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN---LCPICKTTG 675 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~---sCPICR~~l 675 (678)
..+|+||++.|..+ ..+.|-|.||..|+-.-|..++ .||+|+..+
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 45799999999988 7889999999999877776554 599999643
No 100
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=84.69 E-value=1 Score=37.17 Aligned_cols=40 Identities=25% Similarity=0.752 Sum_probs=30.8
Q ss_pred CCCccccccccccCCCceEEeC-CCChhcHHHHHHHHHcCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQKNLCPI 670 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~Lp-CGHvFH~~CI~qWL~~k~sCPI 670 (678)
....|.+|-+.|+.+++++.-| ||-.||..|... ...|-+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 3567999999999777777775 999999999544 444544
No 101
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=84.55 E-value=0.27 Score=39.65 Aligned_cols=32 Identities=31% Similarity=0.771 Sum_probs=24.1
Q ss_pred EEeCCC-ChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 645 GILDCG-HDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 645 ~~LpCG-HvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
..+.|. |..|..|+...|.....||+|+.++.
T Consensus 14 ~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 14 GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred CeeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 356786 88999999999999999999998763
No 102
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.74 E-value=0.64 Score=55.39 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=34.8
Q ss_pred CCCccccccccccCCC-ceEEeC---CCChhcHHHHHHHHHc------CCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGD-NLGILD---CGHDFHTNCIKQWLMQ------KNLCPICKTTG 675 (678)
Q Consensus 627 e~e~C~ICLEefe~gd-~V~~Lp---CGHvFH~~CI~qWL~~------k~sCPICR~~l 675 (678)
+...|.||.-++..++ ....++ |+|-||..||..|+.+ +-.|++|...+
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 3456777777766633 234444 9999999999999873 34589998755
No 103
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.68 E-value=1.3 Score=49.33 Aligned_cols=47 Identities=21% Similarity=0.429 Sum_probs=38.5
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHcC---CCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK---NLCPICKTTG 675 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k---~sCPICR~~l 675 (678)
..|+|=.+.-.+......|.|||+.+++-|.+.-+.. ..||.|=...
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 5799988887777778999999999999999987743 4699995543
No 104
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.26 E-value=0.77 Score=54.78 Aligned_cols=44 Identities=30% Similarity=0.659 Sum_probs=33.9
Q ss_pred CCCccccccccccCC----CceEEeCCCChhcHHHHHHHHHcCCCCCCC
Q 005771 627 DEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPIC 671 (678)
Q Consensus 627 e~e~C~ICLEefe~g----d~V~~LpCGHvFH~~CI~qWL~~k~sCPIC 671 (678)
.+..|+-|.+..-.. +.++.+.|||+||+.|+..-..+.+ |-+|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 345799999987632 4578899999999999988766554 6555
No 105
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=77.93 E-value=3.1 Score=42.38 Aligned_cols=42 Identities=26% Similarity=0.690 Sum_probs=29.3
Q ss_pred CCCcccccccc-----ccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCC
Q 005771 627 DEEPCCICQEE-----YTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKT 673 (678)
Q Consensus 627 e~e~C~ICLEe-----fe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~ 673 (678)
....|-||-.+ |.....+..-.|+-+||..|.. +..||-|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 35689999863 2232334444799999999976 267999954
No 106
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=76.14 E-value=2.5 Score=33.99 Aligned_cols=43 Identities=19% Similarity=0.386 Sum_probs=21.0
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHH---cCC--CCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKN--LCPICKTT 674 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~---~k~--sCPICR~~ 674 (678)
..|+|....+..+ ++-..|.|.-|.+ +..||. ++. .||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 3699999988876 4555799985433 344554 222 49999864
No 107
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.72 E-value=2.4 Score=47.86 Aligned_cols=37 Identities=32% Similarity=0.689 Sum_probs=31.6
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHc
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ 664 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~ 664 (678)
.....|-||.+.+.. .+..+.|+|.||..|+...|..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 445789999999876 5677899999999999999884
No 108
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.51 E-value=1.3 Score=51.83 Aligned_cols=40 Identities=25% Similarity=0.533 Sum_probs=29.8
Q ss_pred CCccccccccccCCC-ceEEeCCCChhcHHHHHHHHHcCCCCC
Q 005771 628 EEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQKNLCP 669 (678)
Q Consensus 628 ~e~C~ICLEefe~gd-~V~~LpCGHvFH~~CI~qWL~~k~sCP 669 (678)
...|.||+..|.... .-+.|.|||+.|..|+..-.. .+||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC
Confidence 356999988887543 236678999999999988544 4566
No 109
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.07 E-value=2.4 Score=45.75 Aligned_cols=27 Identities=22% Similarity=0.655 Sum_probs=21.9
Q ss_pred CCChhcHHHHHHHHH-------------cCCCCCCCCCCC
Q 005771 649 CGHDFHTNCIKQWLM-------------QKNLCPICKTTG 675 (678)
Q Consensus 649 CGHvFH~~CI~qWL~-------------~k~sCPICR~~l 675 (678)
|..++|..|+.+|+. .+..||.||+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 678899999999875 355699999863
No 110
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=69.27 E-value=4.3 Score=44.51 Aligned_cols=49 Identities=20% Similarity=0.387 Sum_probs=37.2
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTT 674 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ 674 (678)
.....|-.|.++.......++-.|+|+||.+|=.---+.-..||-|...
T Consensus 328 ~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 328 NGSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEHK 376 (378)
T ss_pred CCCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCCC
Confidence 3455699998888877667777899999999954444455679999754
No 111
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.72 E-value=7 Score=43.68 Aligned_cols=42 Identities=24% Similarity=0.581 Sum_probs=29.8
Q ss_pred CccccccccccCCC---ceEEeCCCChhcHHHHHHHHHcCCCCCCC
Q 005771 629 EPCCICQEEYTDGD---NLGILDCGHDFHTNCIKQWLMQKNLCPIC 671 (678)
Q Consensus 629 e~C~ICLEefe~gd---~V~~LpCGHvFH~~CI~qWL~~k~sCPIC 671 (678)
..|++|.-.++..+ .+... |||.||..|...|......|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 45777766654322 23344 99999999999998888877555
No 112
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=65.63 E-value=4.7 Score=48.35 Aligned_cols=41 Identities=22% Similarity=0.569 Sum_probs=30.5
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPI 670 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPI 670 (678)
..|++|-..+.. ..+-+-.|+|.-|..|+++|+.....||.
T Consensus 780 ~~CtVC~~vi~G-~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG-VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee-eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 368888766543 22223359999999999999998888876
No 113
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=65.13 E-value=3.4 Score=44.11 Aligned_cols=47 Identities=26% Similarity=0.573 Sum_probs=34.5
Q ss_pred CccccccccccCCCceEEe----CCCChhcHHHHHHHHH---------cCCCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGIL----DCGHDFHTNCIKQWLM---------QKNLCPICKTTG 675 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~L----pCGHvFH~~CI~qWL~---------~k~sCPICR~~l 675 (678)
..|-||.++|...+..+.+ .|.-++|..|+..-+. ....||.|++-+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 5899999999554444333 3999999999998443 234599999843
No 114
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=64.65 E-value=3 Score=43.25 Aligned_cols=44 Identities=25% Similarity=0.789 Sum_probs=37.0
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICK 672 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR 672 (678)
....|.+|.+-.-.+ +++-.|+-.||..|+...+.+...||.|.
T Consensus 180 nlk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchh
Confidence 446899999987666 34557999999999999999999999993
No 115
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.28 E-value=2.9 Score=44.98 Aligned_cols=36 Identities=25% Similarity=0.644 Sum_probs=29.3
Q ss_pred CCccccccccccCCCceEEeCC----CChhcHHHHHHHHHcCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDC----GHDFHTNCIKQWLMQKN 666 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpC----GHvFH~~CI~qWL~~k~ 666 (678)
...|.+|.|.+++.+ ...| .|+||.-|-++-++++.
T Consensus 268 pLcCTLC~ERLEDTH---FVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTH---FVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred ceeehhhhhhhccCc---eeecCCCcccceecccCHHHHHhhc
Confidence 367999999998873 4445 69999999999999654
No 116
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.44 E-value=4.6 Score=42.79 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=29.9
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHH
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM 663 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~ 663 (678)
.-..|++||..+.++ ++.+=||+|+.+||.+.+.
T Consensus 42 ~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDP---VITPDGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccCC---ccCCCCeeeeHHHHHHHHH
Confidence 345699999999998 8889999999999999875
No 117
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.20 E-value=3.2 Score=48.09 Aligned_cols=44 Identities=32% Similarity=0.892 Sum_probs=36.1
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 675 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~l 675 (678)
......|.||+++. ..+..+|. |..|+.+|+..+..||+|++..
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~ 519 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYM 519 (543)
T ss_pred hcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhh
Confidence 34457899999998 33666788 8999999999999999997754
No 118
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=60.15 E-value=7.7 Score=42.46 Aligned_cols=52 Identities=27% Similarity=0.558 Sum_probs=35.3
Q ss_pred CCCCCCcccccccccc--------------C-CC-ceEEeCCCChhcHHHHHHHHHc---------CCCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYT--------------D-GD-NLGILDCGHDFHTNCIKQWLMQ---------KNLCPICKTTG 675 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe--------------~-gd-~V~~LpCGHvFH~~CI~qWL~~---------k~sCPICR~~l 675 (678)
....+.+|++|+..=. + +- .-...||||+.-++-.+-|-.. +..||.|-+.+
T Consensus 337 ~g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 337 TGQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred cCcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 3445678999987522 0 10 0123489999999999999762 44699997755
No 119
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=58.46 E-value=11 Score=44.70 Aligned_cols=87 Identities=17% Similarity=0.313 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCCHHHHHHHhhhccCCCc----ccCCCCCCCccccccccccCCCceEEeCCCChhcHHH
Q 005771 582 DNMSYEELLALEERIGDVSTGLNEETIMKIMKQKRYPSL----EIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNC 657 (678)
Q Consensus 582 DnmsyEeLlaLeErig~vstGlSeE~I~kllk~~ky~~~----e~e~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~C 657 (678)
.-.+.+.|++..+.+....+.+ +.-..+.+.+..... ......--..|+||.-.+..+ .+...|+|+ .|
T Consensus 258 ~~~t~~~llq~~~~~~~~~~~~--~~s~~~~~~~l~~~~d~~i~tt~~~vSL~CPl~~~Rm~~P--~r~~~CkHl---Qc 330 (636)
T KOG2169|consen 258 EGLTSKDLLQRLKQNGKINRNL--SQSDALIKKKLTAGPDSEIATTSLRVSLNCPLSKMRMSLP--ARGHTCKHL---QC 330 (636)
T ss_pred cccCHHHHHHHHhccCCccCch--hHhHHHhhcccccCCcccceeccceeEecCCcccceeecC--Ccccccccc---ee
Confidence 3456777777666554433311 222222222222111 111112235688887765444 233445554 45
Q ss_pred HHH-HHHc----CC--CCCCCCCCC
Q 005771 658 IKQ-WLMQ----KN--LCPICKTTG 675 (678)
Q Consensus 658 I~q-WL~~----k~--sCPICR~~l 675 (678)
.+. |+.+ +. .||+|.+.+
T Consensus 331 FD~~~~lq~n~~~pTW~CPVC~~~~ 355 (636)
T KOG2169|consen 331 FDALSYLQMNEQKPTWRCPVCQKAA 355 (636)
T ss_pred cchhhhHHhccCCCeeeCccCCccc
Confidence 533 3332 22 299998765
No 120
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.06 E-value=4.4 Score=44.00 Aligned_cols=51 Identities=29% Similarity=0.537 Sum_probs=41.1
Q ss_pred CCCCCCccccccccccCCCceEEe-CCCChhcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~k~sCPICR~~llp 677 (678)
.......|-||...+..+ ... -|.|.|+..|...|....+.||.||..+.+
T Consensus 101 ~~~~~~~~~~~~g~l~vp---t~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 101 FQQDHDICYICYGKLTVP---TRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred ccCCccceeeeeeeEEec---ccccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 345567899999988766 233 399999999999999999999999986543
No 122
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=52.21 E-value=9.5 Score=41.88 Aligned_cols=49 Identities=24% Similarity=0.414 Sum_probs=37.8
Q ss_pred CCccccccccccCCCc-eEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~-V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
...|+||.+.....+. ..-.+|++..|..|+..-......||.||++..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 3679999998744332 233368999999999998888999999997653
No 123
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.18 E-value=21 Score=33.73 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=34.6
Q ss_pred CCccccccccccCCC-----------ceEEeCCCChhcHHHHHHHHHcCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGD-----------NLGILDCGHDFHTNCIKQWLMQKNLCPICKT 673 (678)
Q Consensus 628 ~e~C~ICLEefe~gd-----------~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~ 673 (678)
...|--|+..|.... ....-.|++.||.+|=.-+-+.-..||-|..
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 356999999886531 1224479999999998877777788999964
No 124
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=44.42 E-value=15 Score=40.41 Aligned_cols=45 Identities=24% Similarity=0.464 Sum_probs=35.1
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHc---CCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ---KNLCPICKT 673 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~---k~sCPICR~ 673 (678)
..|++-.+...+......|.|||+.-++-++..-+. ...||.|=.
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 579987777777777789999999999998885542 345999943
No 125
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=43.84 E-value=7.6 Score=43.60 Aligned_cols=49 Identities=24% Similarity=0.526 Sum_probs=0.0
Q ss_pred CCcccccccccc--------------CCC--ceEEeCCCChhcHHHHHHHHHc---------CCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYT--------------DGD--NLGILDCGHDFHTNCIKQWLMQ---------KNLCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe--------------~gd--~V~~LpCGHvFH~~CI~qWL~~---------k~sCPICR~~ll 676 (678)
..+|++|+..-. +.. ....-||||+-=.++.+-|-+. +..||.|-..|.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 678999986522 100 1234499999999999999762 346999987663
No 126
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=43.62 E-value=21 Score=25.45 Aligned_cols=38 Identities=21% Similarity=0.436 Sum_probs=25.2
Q ss_pred ccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 630 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 630 ~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
.|..|-+.+...+.+.. .=+..||..| ..|..|+..+.
T Consensus 1 ~C~~C~~~i~~~~~~~~-~~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLR-ALGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEE-eCCccccccC--------CCCcccCCcCc
Confidence 37888888876532222 2367788877 45888887663
No 127
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=43.16 E-value=14 Score=33.72 Aligned_cols=39 Identities=26% Similarity=0.665 Sum_probs=30.7
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLPT 678 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~llpT 678 (678)
...|-||-..+... ||.||..|-.+ +..|.+|-+.++.|
T Consensus 44 ~~~C~~CK~~v~q~--------g~~YCq~CAYk----kGiCamCGKki~dt 82 (90)
T PF10235_consen 44 SSKCKICKTKVHQP--------GAKYCQTCAYK----KGICAMCGKKILDT 82 (90)
T ss_pred CccccccccccccC--------CCccChhhhcc----cCcccccCCeeccc
Confidence 45799998876653 68899999654 78999999888764
No 128
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=42.87 E-value=8.1 Score=43.41 Aligned_cols=28 Identities=29% Similarity=0.787 Sum_probs=0.0
Q ss_pred eEEeCCCChhcHHHHHHHHHc------CCCCCCCCCC
Q 005771 644 LGILDCGHDFHTNCIKQWLMQ------KNLCPICKTT 674 (678)
Q Consensus 644 V~~LpCGHvFH~~CI~qWL~~------k~sCPICR~~ 674 (678)
.+-|.|||++..+ .|-.. ...||+||..
T Consensus 304 ~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 304 WVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -------------------------------------
T ss_pred eeeccccceeeec---ccccccccccccccCCCcccc
Confidence 4678999987643 46542 4569999974
No 129
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.38 E-value=27 Score=37.41 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=34.5
Q ss_pred CCccccccccccCCCceEEe-CCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
...|+|---++........| .|||+|-..-+++. ....|++|.+...
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~ 158 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQ 158 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccc
Confidence 45799877777655444444 89999999888874 2567999987653
No 130
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=38.72 E-value=17 Score=42.74 Aligned_cols=36 Identities=28% Similarity=0.661 Sum_probs=25.6
Q ss_pred CCCCccccccccccC---CC-c------eEEeCCCChhcHHHHHHH
Q 005771 626 SDEEPCCICQEEYTD---GD-N------LGILDCGHDFHTNCIKQW 661 (678)
Q Consensus 626 ~e~e~C~ICLEefe~---gd-~------V~~LpCGHvFH~~CI~qW 661 (678)
+....|+||.|.|+. .+ + .+.+.-|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 566789999999983 11 1 233346889999998654
No 131
>PLN02189 cellulose synthase
Probab=38.66 E-value=26 Score=43.89 Aligned_cols=49 Identities=31% Similarity=0.549 Sum_probs=34.2
Q ss_pred CCCccccccccccC---CCc-eEEeCCCChhcHHHHHHHHH-cCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTD---GDN-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 675 (678)
Q Consensus 627 e~e~C~ICLEefe~---gd~-V~~LpCGHvFH~~CI~qWL~-~k~sCPICR~~l 675 (678)
..+.|.||-+++.. ++. +.+-.|+--.|..|.+-=-+ .+..||.||+.-
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y 86 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRY 86 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCch
Confidence 45689999999874 333 33446998899999943222 356799999854
No 132
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=37.76 E-value=49 Score=27.88 Aligned_cols=44 Identities=20% Similarity=0.662 Sum_probs=30.3
Q ss_pred ccccccccccCCC-c--eEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 630 PCCICQEEYTDGD-N--LGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 630 ~C~ICLEefe~gd-~--V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~llp 677 (678)
.|-.|-.++..+. + +....| .||.+|...-| +..||.|--.+++
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfEC--TFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFEC--TFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeC--cccHHHHHHHh--cCcCcCCCCcccc
Confidence 4666777766543 1 222234 59999999976 7899999887764
No 133
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=37.03 E-value=31 Score=43.38 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=34.6
Q ss_pred CCCccccccccccCCC---c-eEEeCCCChhcHHHHHHHHH-cCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGD---N-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 675 (678)
Q Consensus 627 e~e~C~ICLEefe~gd---~-V~~LpCGHvFH~~CI~qWL~-~k~sCPICR~~l 675 (678)
....|-||=+++.... . |.+-.|+--.|..|.+-=-+ -...||.||..-
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrY 69 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKY 69 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCch
Confidence 4568999999987433 2 45557998899999943222 345799999753
No 134
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=35.13 E-value=14 Score=28.73 Aligned_cols=44 Identities=25% Similarity=0.598 Sum_probs=29.0
Q ss_pred ccccccccccCCCceEEeCCCChhcHHHHHHHHH------cCCCCCCCCC
Q 005771 630 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM------QKNLCPICKT 673 (678)
Q Consensus 630 ~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~------~k~sCPICR~ 673 (678)
.|.||...-..++.|..-.|+-.||..|+..=.. ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 3889999444443344447999999999866443 1335887753
No 135
>PLN02436 cellulose synthase A
Probab=34.48 E-value=33 Score=43.17 Aligned_cols=49 Identities=24% Similarity=0.521 Sum_probs=34.4
Q ss_pred CCCccccccccccC---CCc-eEEeCCCChhcHHHHHHHHH-cCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTD---GDN-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 675 (678)
Q Consensus 627 e~e~C~ICLEefe~---gd~-V~~LpCGHvFH~~CI~qWL~-~k~sCPICR~~l 675 (678)
....|-||-+++.. ++. |.+-.|+--.|..|.+-=-+ ....||.||+.-
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y 88 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCch
Confidence 45689999999753 433 34446998899999943222 355799999853
No 136
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.31 E-value=9.6 Score=40.30 Aligned_cols=48 Identities=31% Similarity=0.705 Sum_probs=36.3
Q ss_pred CCCccccccccccCC-Cc--eEEeC--------CCChhcHHHHHHHHHcCC-CCCCCCCC
Q 005771 627 DEEPCCICQEEYTDG-DN--LGILD--------CGHDFHTNCIKQWLMQKN-LCPICKTT 674 (678)
Q Consensus 627 e~e~C~ICLEefe~g-d~--V~~Lp--------CGHvFH~~CI~qWL~~k~-sCPICR~~ 674 (678)
....|.||...|... .. -..+. |+|..|..|+..-+.+.. .||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 346799999999832 22 23335 999999999999987654 79999863
No 137
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=33.20 E-value=25 Score=30.41 Aligned_cols=11 Identities=36% Similarity=1.141 Sum_probs=8.5
Q ss_pred hcHHHHHHHHH
Q 005771 653 FHTNCIKQWLM 663 (678)
Q Consensus 653 FH~~CI~qWL~ 663 (678)
||..|+.+|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 138
>PLN02400 cellulose synthase
Probab=30.36 E-value=31 Score=43.45 Aligned_cols=49 Identities=20% Similarity=0.440 Sum_probs=34.3
Q ss_pred CCCccccccccccCCC---c-eEEeCCCChhcHHHHHHHHH-cCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGD---N-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 675 (678)
Q Consensus 627 e~e~C~ICLEefe~gd---~-V~~LpCGHvFH~~CI~qWL~-~k~sCPICR~~l 675 (678)
....|-||=+++...+ . |.+-.|+--.|..|.+-=-+ -...||.||..-
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrY 88 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRY 88 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcc
Confidence 3568999999987533 2 45557998899999843111 245699999754
No 139
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.18 E-value=23 Score=42.32 Aligned_cols=42 Identities=17% Similarity=0.382 Sum_probs=30.0
Q ss_pred CCccccccccccCCCce-EEeCCCChhcHHHHHHHHHcCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQWLMQKNLCPICK 672 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V-~~LpCGHvFH~~CI~qWL~~k~sCPICR 672 (678)
...|.+|+..-...-.+ +.+.|+-.||..| |+-....||+|-
T Consensus 654 ~r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~ 696 (717)
T KOG3726|consen 654 IRTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCG 696 (717)
T ss_pred HHHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccC
Confidence 46799998764422223 4457999999998 666777899994
No 140
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=30.10 E-value=21 Score=26.90 Aligned_cols=25 Identities=36% Similarity=0.759 Sum_probs=17.3
Q ss_pred ccccccccccCCCc--------eEEeCCCChhc
Q 005771 630 PCCICQEEYTDGDN--------LGILDCGHDFH 654 (678)
Q Consensus 630 ~C~ICLEefe~gd~--------V~~LpCGHvFH 654 (678)
.|+=|.-.|..+++ +..-.|+|+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 58888888886554 34446888874
No 141
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=29.82 E-value=27 Score=28.08 Aligned_cols=38 Identities=18% Similarity=0.572 Sum_probs=20.6
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHH--cCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM--QKNLCPICKTTG 675 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~--~k~sCPICR~~l 675 (678)
...|+.|-+++... . +...|...-.. ..-.||+|...+
T Consensus 2 ~f~CP~C~~~~~~~----~------L~~H~~~~H~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 2 SFTCPYCGKGFSES----S------LVEHCEDEHRSESKNVVCPICSSRV 41 (54)
T ss_pred CcCCCCCCCccCHH----H------HHHHHHhHCcCCCCCccCCCchhhh
Confidence 45799999865433 1 22233333222 234599997643
No 142
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=29.67 E-value=24 Score=29.01 Aligned_cols=42 Identities=26% Similarity=0.539 Sum_probs=20.1
Q ss_pred cccccccccCCC------ceEE-eCCCChhcHHHHHHHHHcCCCCCCCC
Q 005771 631 CCICQEEYTDGD------NLGI-LDCGHDFHTNCIKQWLMQKNLCPICK 672 (678)
Q Consensus 631 C~ICLEefe~gd------~V~~-LpCGHvFH~~CI~qWL~~k~sCPICR 672 (678)
|--|+..|.... .... -.|++.||.+|=.---+.-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 455666666542 1222 25999999999332222345699884
No 143
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=29.63 E-value=20 Score=46.49 Aligned_cols=34 Identities=26% Similarity=0.518 Sum_probs=13.5
Q ss_pred ccccccccccCCCceEEeCCCChhcHHHHHHHHH
Q 005771 630 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM 663 (678)
Q Consensus 630 ~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~ 663 (678)
.|-||.....+.+.+.+..|--.||..|++.-+.
T Consensus 1110 ~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~ 1143 (1404)
T KOG1245|consen 1110 LCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALS 1143 (1404)
T ss_pred hhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhc
Confidence 3444444433332233333444444444444333
No 144
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=29.44 E-value=46 Score=29.73 Aligned_cols=49 Identities=20% Similarity=0.485 Sum_probs=21.3
Q ss_pred CCCccccccccccCC---Cc-eEEeCCCChhcHHHHHHHHHc-CCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDG---DN-LGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTG 675 (678)
Q Consensus 627 e~e~C~ICLEefe~g---d~-V~~LpCGHvFH~~CI~qWL~~-k~sCPICR~~l 675 (678)
....|-||=+++... +. +....|+--.|..|+.-=.+. ...||.||...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRY 61 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B-
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCc
Confidence 457899999998743 22 333469988999998765554 56799999753
No 145
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=29.44 E-value=26 Score=24.85 Aligned_cols=22 Identities=32% Similarity=0.698 Sum_probs=13.3
Q ss_pred ccccccccccCCCceEEeC-CCChh
Q 005771 630 PCCICQEEYTDGDNLGILD-CGHDF 653 (678)
Q Consensus 630 ~C~ICLEefe~gd~V~~Lp-CGHvF 653 (678)
.|+-|...+... ...-| |||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 577777776543 22334 77776
No 146
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.24 E-value=79 Score=34.09 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=29.4
Q ss_pred CCCCCccccccc-cccCCCce-EEeCCCChhcHHHHHHHHH
Q 005771 625 PSDEEPCCICQE-EYTDGDNL-GILDCGHDFHTNCIKQWLM 663 (678)
Q Consensus 625 ~~e~e~C~ICLE-efe~gd~V-~~LpCGHvFH~~CI~qWL~ 663 (678)
....+.|++|+. ++....+. ....|+|.|+..|..-|..
T Consensus 92 ~~~~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~ 132 (271)
T COG5574 92 FNREETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSI 132 (271)
T ss_pred cccccccccccCcccccccccceeeecccccchhhhHHHHH
Confidence 445678999888 55544443 4448999999999999988
No 147
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=28.68 E-value=30 Score=37.04 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=33.5
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC--CCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN--LCPICK 672 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~--sCPICR 672 (678)
...|+|=...+..+ ++...|||+|-.+-|...+.... .||+=-
T Consensus 176 s~rdPis~~~I~nP--viSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP--VISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred cccCchhhhhhhch--hhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 46799988888777 55668999999999999988643 488743
No 148
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=27.13 E-value=4.7 Score=35.06 Aligned_cols=39 Identities=28% Similarity=0.571 Sum_probs=20.0
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 675 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~l 675 (678)
..|+.|..++.... +|.+|..|-.. +.....||-|.+++
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHH
Confidence 46889988865432 66666666554 34456689888765
No 149
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=27.06 E-value=15 Score=43.96 Aligned_cols=46 Identities=26% Similarity=0.626 Sum_probs=29.4
Q ss_pred CCccccccccccCCC--ceEEe-----CCCChhcHHHHHHHHH----------cCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGD--NLGIL-----DCGHDFHTNCIKQWLM----------QKNLCPICKT 673 (678)
Q Consensus 628 ~e~C~ICLEefe~gd--~V~~L-----pCGHvFH~~CI~qWL~----------~k~sCPICR~ 673 (678)
.+.|-||.|+=+..+ .-.++ .|+..||..|...-=. .-+.|-+|+.
T Consensus 117 nKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~ 179 (900)
T KOG0956|consen 117 NKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKY 179 (900)
T ss_pred cceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHH
Confidence 468999999833222 12333 3788899999865411 2235999975
No 150
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=26.93 E-value=67 Score=35.45 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=35.3
Q ss_pred CCCCCCCccccccccccCCCc-----------eEEeCCCChhcHHHHHHHHHcCCCCCCCCCC
Q 005771 623 EIPSDEEPCCICQEEYTDGDN-----------LGILDCGHDFHTNCIKQWLMQKNLCPICKTT 674 (678)
Q Consensus 623 e~~~e~e~C~ICLEefe~gd~-----------V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ 674 (678)
........|-+|+..|..... ..+-.|+-.||.+|=.---+.-..|+-|..+
T Consensus 357 ~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh~C~gCe~~ 419 (421)
T COG5151 357 GTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDVFIHETLHFCIGCELP 419 (421)
T ss_pred CCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHHHHHHHHhhCCCCcCC
Confidence 334455679999998874321 2233599999999965555556679999653
No 151
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=25.83 E-value=76 Score=40.04 Aligned_cols=51 Identities=22% Similarity=0.468 Sum_probs=36.1
Q ss_pred CCCCCccccccccccCC---Cc-eEEeCCCChhcHHHHHHHHH-cCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDG---DN-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTG 675 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~g---d~-V~~LpCGHvFH~~CI~qWL~-~k~sCPICR~~l 675 (678)
....+.|-||=+++... +. |.+-.|+--.|..|.+-=.+ ....||.||..-
T Consensus 12 ~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y 67 (1044)
T PLN02915 12 SADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRY 67 (1044)
T ss_pred CCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCch
Confidence 34567899999998743 32 44557998899999943222 345799999753
No 152
>PLN02248 cellulose synthase-like protein
Probab=24.20 E-value=51 Score=41.72 Aligned_cols=49 Identities=22% Similarity=0.609 Sum_probs=35.5
Q ss_pred CCCcccc--ccccccC---CCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCC
Q 005771 627 DEEPCCI--CQEEYTD---GDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 675 (678)
Q Consensus 627 e~e~C~I--CLEefe~---gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~l 675 (678)
....|.+ |-.+... ++++....|++..|.+|...-++....||-||.+-
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1135)
T PLN02248 123 KGSSCAMPGCDGKVMRDERGEDLLPCECGFKICRDCYIDAVKSGGICPGCKEPY 176 (1135)
T ss_pred CCCcccccCcccccccccccccCCcccccchhHHhHhhhhhhcCCCCCCCcccc
Confidence 3456665 5444332 33455556889999999999999999999999764
No 153
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=23.30 E-value=53 Score=23.43 Aligned_cols=29 Identities=24% Similarity=0.572 Sum_probs=11.4
Q ss_pred ccccccccccCCCceEEeCCCChhcHHHH
Q 005771 630 PCCICQEEYTDGDNLGILDCGHDFHTNCI 658 (678)
Q Consensus 630 ~C~ICLEefe~gd~V~~LpCGHvFH~~CI 658 (678)
.|.+|.+.....-......|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 58899988766333455579999999996
No 154
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=22.48 E-value=29 Score=39.90 Aligned_cols=46 Identities=17% Similarity=0.538 Sum_probs=30.1
Q ss_pred CCcccccccccc-CCCceEEe-CCCChhcHHHHHHHHHc--------CCCCCCCCC
Q 005771 628 EEPCCICQEEYT-DGDNLGIL-DCGHDFHTNCIKQWLMQ--------KNLCPICKT 673 (678)
Q Consensus 628 ~e~C~ICLEefe-~gd~V~~L-pCGHvFH~~CI~qWL~~--------k~sCPICR~ 673 (678)
...|++|++-.. ....++.. .|.-.||..|.....+. ...|=+|..
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc
Confidence 345999996543 34444444 69999999998765441 123888865
No 155
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=22.45 E-value=34 Score=25.81 Aligned_cols=25 Identities=32% Similarity=0.723 Sum_probs=17.2
Q ss_pred ccccccccccCCCc--------eEEeCCCChhc
Q 005771 630 PCCICQEEYTDGDN--------LGILDCGHDFH 654 (678)
Q Consensus 630 ~C~ICLEefe~gd~--------V~~LpCGHvFH 654 (678)
.|+-|...|..+++ +..-.|+|+|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 58888888886553 33335888874
No 156
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.44 E-value=25 Score=39.95 Aligned_cols=38 Identities=16% Similarity=0.390 Sum_probs=28.0
Q ss_pred CCccccccccccCCCc---eEEe--CCCChhcHHHHHHHHHcC
Q 005771 628 EEPCCICQEEYTDGDN---LGIL--DCGHDFHTNCIKQWLMQK 665 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~---V~~L--pCGHvFH~~CI~qWL~~k 665 (678)
...|+.|.-.++...- .... .|+|.||+.|+..|-...
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred CccCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 3459999999886541 1222 499999999999987763
No 157
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=22.37 E-value=14 Score=40.09 Aligned_cols=38 Identities=32% Similarity=0.512 Sum_probs=30.7
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHHcC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK 665 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k 665 (678)
...|.+|+++|..+.....+.|--+||..|+..|+...
T Consensus 214 ~rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 214 IRVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred ceecHHHHHHHhcccccchhhccccccccccccccccc
Confidence 34899999999875555666666699999999999853
No 158
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=22.14 E-value=37 Score=40.98 Aligned_cols=48 Identities=31% Similarity=0.625 Sum_probs=32.1
Q ss_pred CCCCccccccccccCCCc-------eEEeCCCChh--------------------cHHHHHHHHH--------cCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDN-------LGILDCGHDF--------------------HTNCIKQWLM--------QKNLCPI 670 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~-------V~~LpCGHvF--------------------H~~CI~qWL~--------~k~sCPI 670 (678)
.+...|.-|++++-++.. +.++.||-.| |..|-+++-. +-..||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 345679999999887765 4455677543 7788877643 2235999
Q ss_pred CCC
Q 005771 671 CKT 673 (678)
Q Consensus 671 CR~ 673 (678)
|.=
T Consensus 179 CGP 181 (750)
T COG0068 179 CGP 181 (750)
T ss_pred cCC
Confidence 953
No 159
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=21.95 E-value=50 Score=26.02 Aligned_cols=11 Identities=27% Similarity=0.766 Sum_probs=4.8
Q ss_pred ccccccccccC
Q 005771 630 PCCICQEEYTD 640 (678)
Q Consensus 630 ~C~ICLEefe~ 640 (678)
.|.+|...+..
T Consensus 28 ~C~~C~~~l~~ 38 (58)
T PF00412_consen 28 KCSKCGKPLND 38 (58)
T ss_dssp BETTTTCBTTT
T ss_pred ccCCCCCccCC
Confidence 34444444433
No 160
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=21.63 E-value=16 Score=38.94 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=20.7
Q ss_pred CCCccccccccccCCCceEEe--CCCChhcHHHHHHHHHcCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLMQKNLCPICKTT 674 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~L--pCGHvFH~~CI~qWL~~k~sCPICR~~ 674 (678)
....|+||=...........- --.|.+|.-|-..|-.....||.|-..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 346899998875432100000 013567778888887788889999653
No 161
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=21.49 E-value=29 Score=28.82 Aligned_cols=37 Identities=22% Similarity=0.494 Sum_probs=18.8
Q ss_pred CCCCccccccccccCCCceEEe-CCCChhcHHHHHHHH
Q 005771 626 SDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWL 662 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL 662 (678)
.+...|.+|...|..-..-..- .||++||..|....+
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 3456899999999754322222 699999999987554
No 162
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=21.04 E-value=43 Score=24.63 Aligned_cols=21 Identities=24% Similarity=0.670 Sum_probs=12.5
Q ss_pred CCCChhcHHHHHHHHHcCCCCCCCCCC
Q 005771 648 DCGHDFHTNCIKQWLMQKNLCPICKTT 674 (678)
Q Consensus 648 pCGHvFH~~CI~qWL~~k~sCPICR~~ 674 (678)
.|||+|-... ....||+|...
T Consensus 6 ~CGy~y~~~~------~~~~CP~Cg~~ 26 (33)
T cd00350 6 VCGYIYDGEE------APWVCPVCGAP 26 (33)
T ss_pred CCCCEECCCc------CCCcCcCCCCc
Confidence 4666554322 34479999764
No 163
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=20.55 E-value=65 Score=25.54 Aligned_cols=35 Identities=20% Similarity=0.457 Sum_probs=25.7
Q ss_pred CccccccccccCCCce-EEeCCCChhcHHHHHHHHH
Q 005771 629 EPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQWLM 663 (678)
Q Consensus 629 e~C~ICLEefe~gd~V-~~LpCGHvFH~~CI~qWL~ 663 (678)
..|.+|...|..-..- ..-.||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 5689999888764322 2336999999999987755
No 164
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=20.50 E-value=49 Score=36.54 Aligned_cols=29 Identities=28% Similarity=0.771 Sum_probs=18.8
Q ss_pred ceEEeCCCChhcHHHHHHHHHc------CCCCCCCCCC
Q 005771 643 NLGILDCGHDFHTNCIKQWLMQ------KNLCPICKTT 674 (678)
Q Consensus 643 ~V~~LpCGHvFH~~CI~qWL~~------k~sCPICR~~ 674 (678)
..+-|.|||+-.. ..|=.+ ...||+||..
T Consensus 316 P~vYl~CGHV~G~---H~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 316 PWVYLNCGHVHGY---HNWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred CeEEEeccccccc---cccccccccCcccCcCCeeeee
Confidence 3578899997322 246443 3469999963
No 165
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=20.48 E-value=46 Score=38.22 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=26.6
Q ss_pred CCCCCCccccccccccCCCceEE-eCCCChhcHHHHHH
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQ 660 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~-LpCGHvFH~~CI~q 660 (678)
.+.....|++|-..|...-.-.. --||-+.|.+|.+-
T Consensus 176 DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~ 213 (505)
T KOG1842|consen 176 DDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKF 213 (505)
T ss_pred CCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHh
Confidence 34556789999999986422222 25999999999765
No 166
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=20.33 E-value=30 Score=42.31 Aligned_cols=35 Identities=20% Similarity=0.525 Sum_probs=25.2
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHH
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWL 662 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL 662 (678)
....|-.|.-....- ..++-.|+|.||..|++.|.
T Consensus 228 ~~~mC~~C~~tlfn~-hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 228 IREMCDRCETTLFNI-HWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred cchhhhhhcccccce-eEEccccCCeeeecchhhcc
Confidence 346688887764331 13444799999999999995
No 167
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=20.30 E-value=68 Score=35.44 Aligned_cols=45 Identities=2% Similarity=-0.171 Sum_probs=34.2
Q ss_pred CCCCccccccccccCCCceEEeCCCCh-hcHHHHHHHHHcCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTG 675 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHv-FH~~CI~qWL~~k~sCPICR~~l 675 (678)
-...+|-.|-+..... ...+|+|- ||..|.. +....+||+|...+
T Consensus 341 ~s~~~~~~~~~~~~st---~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 341 MSSLKGTSAGFGLLST---IWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hhhcccccccCceeee---EeecCCcccChhhhhh--cccCCccccccccc
Confidence 3456788888776544 56689986 8999988 67888999997643
Done!