Query 005771
Match_columns 678
No_of_seqs 266 out of 1792
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 07:02:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.5 1E-14 3.4E-19 126.4 5.6 77 599-677 13-89 (91)
2 2ep4_A Ring finger protein 24; 99.4 1.4E-13 4.7E-18 113.8 5.9 53 625-677 12-64 (74)
3 2kiz_A E3 ubiquitin-protein li 99.4 1.9E-13 6.6E-18 111.4 6.5 55 623-677 9-63 (69)
4 1x4j_A Ring finger protein 38; 99.4 8.1E-14 2.8E-18 115.8 4.1 53 625-677 20-72 (75)
5 1iym_A EL5; ring-H2 finger, ub 99.4 1.5E-13 5.2E-18 107.1 4.2 51 626-676 3-54 (55)
6 2ect_A Ring finger protein 126 99.4 2.3E-13 8E-18 113.4 4.6 54 624-677 11-64 (78)
7 1v87_A Deltex protein 2; ring- 99.3 1.7E-12 5.8E-17 115.6 6.6 50 627-676 24-93 (114)
8 2ecm_A Ring finger and CHY zin 99.3 1.7E-12 5.7E-17 101.0 4.9 50 627-676 4-54 (55)
9 2ecl_A Ring-box protein 2; RNF 99.3 3E-12 1E-16 108.8 5.3 52 625-676 12-75 (81)
10 2ea6_A Ring finger protein 4; 99.3 2.2E-12 7.4E-17 104.2 4.2 54 624-677 11-68 (69)
11 3ng2_A RNF4, snurf, ring finge 99.3 2E-12 6.7E-17 105.5 3.6 52 626-677 8-63 (71)
12 2d8t_A Dactylidin, ring finger 99.2 3.5E-12 1.2E-16 105.0 3.0 49 625-676 12-60 (71)
13 2xeu_A Ring finger protein 4; 99.2 5.2E-12 1.8E-16 100.6 3.5 51 627-677 2-56 (64)
14 2djb_A Polycomb group ring fin 99.2 1.2E-11 4.1E-16 102.0 5.7 51 624-677 11-62 (72)
15 3dpl_R Ring-box protein 1; ubi 99.2 9.2E-12 3.2E-16 111.9 5.4 52 624-675 33-99 (106)
16 1chc_A Equine herpes virus-1 r 99.2 1.1E-11 3.7E-16 100.6 4.1 48 627-676 4-51 (68)
17 2ct2_A Tripartite motif protei 99.2 2.5E-11 8.4E-16 102.6 6.4 54 623-676 10-67 (88)
18 2csy_A Zinc finger protein 183 99.2 1.8E-11 6.1E-16 103.0 5.3 50 624-676 11-60 (81)
19 2yur_A Retinoblastoma-binding 99.2 2.3E-11 7.8E-16 101.1 5.2 50 624-676 11-63 (74)
20 2ecn_A Ring finger protein 141 99.1 7.3E-12 2.5E-16 102.3 1.1 49 625-677 12-60 (70)
21 2ysl_A Tripartite motif-contai 99.1 3.7E-11 1.3E-15 98.5 5.1 50 625-677 17-69 (73)
22 2d8s_A Cellular modulator of i 99.1 4.1E-11 1.4E-15 102.7 4.9 52 624-676 11-69 (80)
23 4ayc_A E3 ubiquitin-protein li 99.1 2.2E-11 7.6E-16 112.7 3.3 45 629-676 54-98 (138)
24 2ecy_A TNF receptor-associated 99.1 5.1E-11 1.7E-15 96.5 4.5 50 625-677 12-62 (66)
25 2ecw_A Tripartite motif-contai 99.1 8.7E-11 3E-15 98.1 6.1 49 625-676 16-70 (85)
26 1t1h_A Gspef-atpub14, armadill 99.1 7.3E-11 2.5E-15 98.3 4.8 48 626-676 6-54 (78)
27 4a0k_B E3 ubiquitin-protein li 99.1 1.8E-11 6E-16 112.2 0.6 53 623-675 43-110 (117)
28 2ysj_A Tripartite motif-contai 99.1 1.4E-10 4.7E-15 93.0 5.5 45 624-671 16-63 (63)
29 2ecv_A Tripartite motif-contai 99.1 1.1E-10 3.8E-15 97.4 5.1 49 625-676 16-70 (85)
30 3lrq_A E3 ubiquitin-protein li 99.0 8.2E-11 2.8E-15 103.4 3.6 46 628-676 22-69 (100)
31 3ztg_A E3 ubiquitin-protein li 99.0 1.6E-10 5.4E-15 99.1 5.0 49 624-675 9-60 (92)
32 2egp_A Tripartite motif-contai 99.0 4.6E-11 1.6E-15 99.2 1.4 49 625-676 9-64 (79)
33 4ap4_A E3 ubiquitin ligase RNF 99.0 1.1E-10 3.7E-15 104.9 3.6 50 627-676 6-59 (133)
34 2y43_A E3 ubiquitin-protein li 99.0 1.5E-10 5E-15 100.9 3.9 46 628-676 22-68 (99)
35 2ckl_A Polycomb group ring fin 99.0 1.7E-10 5.7E-15 102.2 4.1 47 627-676 14-61 (108)
36 2ecj_A Tripartite motif-contai 99.0 2.1E-10 7E-15 89.9 3.9 45 624-671 11-58 (58)
37 3fl2_A E3 ubiquitin-protein li 99.0 2.4E-10 8.3E-15 103.5 4.3 46 628-676 52-98 (124)
38 2ckl_B Ubiquitin ligase protei 98.9 3.7E-10 1.3E-14 107.1 4.1 47 627-676 53-101 (165)
39 1g25_A CDK-activating kinase a 98.9 5.7E-10 2E-14 90.0 4.4 50 627-676 2-54 (65)
40 1jm7_A BRCA1, breast cancer ty 98.9 4.8E-10 1.6E-14 98.9 3.9 45 629-676 22-69 (112)
41 1z6u_A NP95-like ring finger p 98.9 6.8E-10 2.3E-14 104.9 4.4 46 629-677 79-125 (150)
42 3hct_A TNF receptor-associated 98.9 7E-10 2.4E-14 100.0 3.9 50 624-676 14-64 (118)
43 4ap4_A E3 ubiquitin ligase RNF 98.9 6.7E-10 2.3E-14 99.7 3.5 53 625-677 69-125 (133)
44 2kr4_A Ubiquitin conjugation f 98.9 1.4E-09 4.8E-14 93.4 4.9 49 625-676 11-59 (85)
45 3l11_A E3 ubiquitin-protein li 98.9 3.6E-10 1.2E-14 101.0 0.9 47 626-675 13-60 (115)
46 2ct0_A Non-SMC element 1 homol 98.8 1.8E-09 6.1E-14 91.6 4.6 50 624-675 11-62 (74)
47 1rmd_A RAG1; V(D)J recombinati 98.8 1.8E-09 6.1E-14 96.6 3.6 46 628-676 23-69 (116)
48 2kre_A Ubiquitin conjugation f 98.8 2.1E-09 7.3E-14 95.3 4.0 48 626-676 27-74 (100)
49 1wgm_A Ubiquitin conjugation f 98.8 3.3E-09 1.1E-13 93.8 5.0 48 626-676 20-68 (98)
50 2c2l_A CHIP, carboxy terminus 98.8 4.9E-09 1.7E-13 105.1 6.2 49 625-676 205-254 (281)
51 2y1n_A E3 ubiquitin-protein li 98.8 3.2E-09 1.1E-13 114.7 4.4 46 628-676 332-378 (389)
52 2vje_A E3 ubiquitin-protein li 98.8 2.8E-09 9.5E-14 87.0 3.0 47 627-676 7-56 (64)
53 2vje_B MDM4 protein; proto-onc 98.7 4.6E-09 1.6E-13 85.4 2.5 47 627-676 6-55 (63)
54 1e4u_A Transcriptional repress 98.7 9.1E-09 3.1E-13 87.5 4.4 52 625-676 8-61 (78)
55 3knv_A TNF receptor-associated 98.7 2.1E-09 7.1E-14 100.7 0.4 48 625-675 28-76 (141)
56 1bor_A Transcription factor PM 98.7 2.8E-09 9.7E-14 84.4 0.9 45 626-676 4-48 (56)
57 1jm7_B BARD1, BRCA1-associated 98.7 3.3E-09 1.1E-13 95.4 0.3 44 628-676 22-66 (117)
58 4ic3_A E3 ubiquitin-protein li 98.6 5.9E-09 2E-13 87.0 1.2 42 628-676 24-66 (74)
59 2yu4_A E3 SUMO-protein ligase 98.6 1.3E-08 4.4E-13 88.8 3.2 46 626-674 5-59 (94)
60 3hcs_A TNF receptor-associated 98.6 2.4E-08 8.1E-13 95.0 3.5 50 624-676 14-64 (170)
61 2f42_A STIP1 homology and U-bo 98.5 5.2E-08 1.8E-12 95.2 4.6 48 626-676 104-152 (179)
62 3k1l_B Fancl; UBC, ring, RWD, 98.4 3.3E-08 1.1E-12 105.1 1.3 52 625-676 305-372 (381)
63 2ea5_A Cell growth regulator w 98.4 1.6E-07 5.4E-12 77.6 4.7 47 624-677 11-58 (68)
64 2ecg_A Baculoviral IAP repeat- 98.4 7.2E-08 2.5E-12 80.4 2.6 42 629-677 26-68 (75)
65 1wim_A KIAA0161 protein; ring 98.3 9E-08 3.1E-12 82.9 1.4 48 627-674 4-61 (94)
66 2bay_A PRE-mRNA splicing facto 98.3 2.3E-07 7.8E-12 75.5 2.7 45 629-676 4-49 (61)
67 2yho_A E3 ubiquitin-protein li 98.3 1.9E-07 6.7E-12 79.2 1.9 41 629-676 19-60 (79)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.2 4.6E-07 1.6E-11 73.6 3.4 48 626-676 4-58 (60)
69 3htk_C E3 SUMO-protein ligase 98.2 3.6E-07 1.2E-11 94.1 2.9 47 627-676 180-231 (267)
70 3t6p_A Baculoviral IAP repeat- 98.2 2.6E-07 9E-12 98.4 0.8 43 627-676 294-337 (345)
71 3vk6_A E3 ubiquitin-protein li 97.7 2.2E-05 7.5E-10 70.1 3.7 45 630-676 3-48 (101)
72 3nw0_A Non-structural maintena 97.3 9.9E-05 3.4E-09 74.9 3.8 47 627-675 179-227 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 93.4 0.033 1.1E-06 48.1 2.4 35 627-661 2-36 (101)
74 2lri_C Autoimmune regulator; Z 93.0 0.061 2.1E-06 44.4 3.3 50 625-677 9-62 (66)
75 2ko5_A Ring finger protein Z; 92.8 0.029 1E-06 49.7 1.0 46 626-676 26-72 (99)
76 3i2d_A E3 SUMO-protein ligase 89.0 0.26 8.8E-06 53.1 4.0 46 629-676 250-299 (371)
77 4fo9_A E3 SUMO-protein ligase 85.4 0.56 1.9E-05 50.3 4.1 46 629-676 216-265 (360)
78 1we9_A PHD finger family prote 85.1 0.12 4E-06 41.7 -1.0 49 626-674 4-58 (64)
79 1wil_A KIAA1045 protein; ring 84.4 0.65 2.2E-05 40.5 3.2 38 623-661 10-47 (89)
80 1wep_A PHF8; structural genomi 82.9 1.1 3.8E-05 37.6 4.1 47 628-675 12-64 (79)
81 2l5u_A Chromodomain-helicase-D 81.8 0.59 2E-05 37.6 1.9 48 625-675 8-59 (61)
82 1f62_A Transcription factor WS 81.0 0.57 1.9E-05 36.0 1.5 44 630-673 2-49 (51)
83 3m62_A Ubiquitin conjugation f 80.7 0.66 2.3E-05 55.4 2.6 49 625-676 888-937 (968)
84 2kgg_A Histone demethylase jar 77.2 1.7 5.7E-05 33.8 3.1 43 630-672 4-52 (52)
85 1mm2_A MI2-beta; PHD, zinc fin 77.1 0.37 1.3E-05 38.8 -0.7 48 626-676 7-58 (61)
86 2k16_A Transcription initiatio 74.1 0.65 2.2E-05 38.4 0.0 50 625-675 15-69 (75)
87 1wem_A Death associated transc 73.8 0.89 3E-05 37.8 0.8 48 629-677 17-73 (76)
88 2lv9_A Histone-lysine N-methyl 73.0 0.97 3.3E-05 39.7 0.8 47 627-674 27-76 (98)
89 1wee_A PHD finger family prote 71.4 0.29 1E-05 40.5 -2.7 50 627-677 15-69 (72)
90 2yql_A PHD finger protein 21A; 68.5 0.35 1.2E-05 38.1 -2.7 46 625-673 6-55 (56)
91 2ysm_A Myeloid/lymphoid or mix 66.6 1.4 4.9E-05 38.9 0.5 38 626-663 5-42 (111)
92 2vpb_A Hpygo1, pygopus homolog 65.5 4.2 0.00014 33.3 3.0 34 626-659 6-41 (65)
93 1fp0_A KAP-1 corepressor; PHD 65.3 1.6 5.3E-05 38.1 0.5 48 624-674 21-72 (88)
94 2cs3_A Protein C14ORF4, MY039 61.6 7.1 0.00024 33.8 3.8 39 626-664 13-52 (93)
95 1weu_A Inhibitor of growth fam 61.1 3.5 0.00012 36.1 1.9 43 629-675 37-86 (91)
96 3v43_A Histone acetyltransfera 60.2 2 6.7E-05 38.4 0.2 45 629-673 62-111 (112)
97 3v43_A Histone acetyltransfera 60.1 10 0.00035 33.6 4.9 33 627-659 4-42 (112)
98 2e6r_A Jumonji/ARID domain-con 56.2 0.82 2.8E-05 39.8 -2.9 48 625-673 13-65 (92)
99 2puy_A PHD finger protein 21A; 55.9 1.2 4.1E-05 35.4 -1.8 44 627-673 4-51 (60)
100 1xwh_A Autoimmune regulator; P 55.8 1.1 3.7E-05 36.5 -2.1 45 626-673 6-54 (66)
101 1wen_A Inhibitor of growth fam 54.3 4.6 0.00016 33.5 1.5 43 628-675 16-66 (71)
102 3o70_A PHD finger protein 13; 54.0 1.4 4.9E-05 36.3 -1.7 46 626-673 17-66 (68)
103 2xb1_A Pygopus homolog 2, B-ce 52.9 5.9 0.0002 35.2 2.0 48 628-675 3-62 (105)
104 2zet_C Melanophilin; complex, 51.8 2.8 9.6E-05 39.8 -0.3 32 627-658 67-100 (153)
105 3ask_A E3 ubiquitin-protein li 48.6 4.1 0.00014 41.2 0.3 47 628-674 174-225 (226)
106 2d8v_A Zinc finger FYVE domain 48.3 8.7 0.0003 32.0 2.2 31 627-661 7-38 (67)
107 2yt5_A Metal-response element- 46.0 8.3 0.00028 30.8 1.7 49 626-674 4-61 (66)
108 1wew_A DNA-binding family prot 45.3 4.6 0.00016 33.8 0.1 48 627-675 15-73 (78)
109 1weo_A Cellulose synthase, cat 45.1 22 0.00074 31.3 4.2 50 627-676 15-69 (93)
110 2lbm_A Transcriptional regulat 44.5 21 0.00072 33.5 4.4 47 625-674 60-117 (142)
111 1zbd_B Rabphilin-3A; G protein 44.1 6.2 0.00021 36.7 0.8 34 626-659 53-88 (134)
112 3shb_A E3 ubiquitin-protein li 44.0 2.2 7.5E-05 36.1 -2.1 43 630-673 28-76 (77)
113 2e6s_A E3 ubiquitin-protein li 42.4 4.1 0.00014 34.3 -0.6 45 628-673 26-76 (77)
114 2co8_A NEDD9 interacting prote 41.6 16 0.00056 30.1 2.9 41 626-676 13-53 (82)
115 3mpx_A FYVE, rhogef and PH dom 41.3 5.6 0.00019 42.2 0.0 49 627-675 374-430 (434)
116 1z60_A TFIIH basal transcripti 39.8 7.4 0.00025 31.5 0.5 43 629-671 16-58 (59)
117 3asl_A E3 ubiquitin-protein li 37.7 4.1 0.00014 33.6 -1.4 44 630-674 20-69 (70)
118 2cu8_A Cysteine-rich protein 2 37.1 23 0.00078 28.4 3.1 39 628-676 9-47 (76)
119 4gne_A Histone-lysine N-methyl 36.7 12 0.00042 33.4 1.5 42 625-672 12-60 (107)
120 1y02_A CARP2, FYVE-ring finger 35.4 3.5 0.00012 37.8 -2.4 45 627-671 18-63 (120)
121 1z2q_A LM5-1; membrane protein 35.1 27 0.00092 29.5 3.3 38 624-661 17-55 (84)
122 2ysm_A Myeloid/lymphoid or mix 34.5 3.2 0.00011 36.6 -2.7 44 630-673 56-103 (111)
123 2dj7_A Actin-binding LIM prote 34.5 21 0.00071 29.4 2.4 40 627-676 14-53 (80)
124 3kv5_D JMJC domain-containing 34.3 6.5 0.00022 43.7 -0.9 47 628-674 36-88 (488)
125 3ql9_A Transcriptional regulat 33.4 29 0.001 32.1 3.5 46 625-674 54-111 (129)
126 2vnf_A ING 4, P29ING4, inhibit 32.8 3.3 0.00011 33.2 -2.7 40 630-673 11-58 (60)
127 1iml_A CRIP, cysteine rich int 32.6 13 0.00045 29.9 0.9 46 627-676 26-72 (76)
128 2ku3_A Bromodomain-containing 32.6 31 0.0011 28.5 3.2 49 625-673 13-65 (71)
129 1x4u_A Zinc finger, FYVE domai 31.9 26 0.00088 29.5 2.6 36 625-660 11-47 (84)
130 2kwj_A Zinc finger protein DPF 31.8 20 0.00069 31.9 2.1 33 629-661 2-41 (114)
131 1wfk_A Zinc finger, FYVE domai 31.7 24 0.00083 30.2 2.5 35 626-660 7-42 (88)
132 1dvp_A HRS, hepatocyte growth 31.4 17 0.00059 35.6 1.7 34 628-661 161-195 (220)
133 2l43_A N-teminal domain from h 31.0 24 0.00082 30.3 2.3 49 626-674 23-75 (88)
134 2yw8_A RUN and FYVE domain-con 30.8 23 0.00077 29.8 2.1 37 625-661 16-53 (82)
135 1joc_A EEA1, early endosomal a 30.4 18 0.00063 32.9 1.6 35 627-661 68-103 (125)
136 3t7l_A Zinc finger FYVE domain 30.3 24 0.00083 30.2 2.2 36 627-662 19-55 (90)
137 1x62_A C-terminal LIM domain p 30.0 34 0.0012 27.7 3.0 38 627-675 14-51 (79)
138 3zyq_A Hepatocyte growth facto 30.0 19 0.00064 35.8 1.7 35 627-661 163-198 (226)
139 2o35_A Hypothetical protein DU 29.2 20 0.00067 32.1 1.5 11 653-663 43-53 (105)
140 1wev_A Riken cDNA 1110020M19; 29.1 19 0.00065 30.8 1.4 46 628-673 16-71 (88)
141 2dar_A PDZ and LIM domain prot 29.0 31 0.0011 28.6 2.7 39 627-676 24-62 (90)
142 3fyb_A Protein of unknown func 28.7 20 0.0007 32.0 1.5 11 653-663 42-52 (104)
143 1x63_A Skeletal muscle LIM-pro 28.1 40 0.0014 27.2 3.1 40 628-676 15-54 (82)
144 1x64_A Alpha-actinin-2 associa 27.9 40 0.0014 27.9 3.2 40 626-676 23-62 (89)
145 1vfy_A Phosphatidylinositol-3- 27.4 29 0.00099 28.5 2.1 32 629-660 12-44 (73)
146 1x4k_A Skeletal muscle LIM-pro 27.1 38 0.0013 26.6 2.8 38 629-675 6-43 (72)
147 3c6w_A P28ING5, inhibitor of g 25.6 5.5 0.00019 31.8 -2.5 40 629-673 10-57 (59)
148 2pv0_B DNA (cytosine-5)-methyl 25.6 29 0.001 37.5 2.3 47 625-674 90-148 (386)
149 1wd2_A Ariadne-1 protein homol 25.4 8.7 0.0003 30.9 -1.4 38 628-665 6-48 (60)
150 2l3k_A Rhombotin-2, linker, LI 25.3 25 0.00087 31.1 1.5 36 627-663 35-70 (123)
151 1m3v_A FLIN4, fusion of the LI 25.2 42 0.0014 29.6 3.0 49 629-677 33-81 (122)
152 1x61_A Thyroid receptor intera 25.0 45 0.0015 26.2 2.8 35 628-664 33-67 (72)
153 2gmg_A Hypothetical protein PF 25.0 10 0.00036 34.1 -1.1 26 645-675 69-94 (105)
154 2rsd_A E3 SUMO-protein ligase 24.5 4.1 0.00014 33.2 -3.5 41 632-673 13-64 (68)
155 3o7a_A PHD finger protein 13 v 24.2 7.2 0.00025 30.1 -2.0 42 631-673 6-51 (52)
156 1x4l_A Skeletal muscle LIM-pro 23.9 47 0.0016 26.1 2.8 38 629-675 6-45 (72)
157 3pwf_A Rubrerythrin; non heme 23.3 28 0.00097 33.2 1.5 24 644-674 139-162 (170)
158 2kwj_A Zinc finger protein DPF 23.0 7.1 0.00024 34.9 -2.6 45 629-673 59-107 (114)
159 2d8z_A Four and A half LIM dom 22.9 61 0.0021 25.3 3.2 10 630-639 7-16 (70)
160 2cor_A Pinch protein; LIM doma 22.6 52 0.0018 26.8 2.8 38 628-676 15-52 (79)
161 3a1b_A DNA (cytosine-5)-methyl 21.9 58 0.002 31.2 3.3 44 626-673 77-133 (159)
162 2g6q_A Inhibitor of growth pro 21.8 7.3 0.00025 31.5 -2.5 41 630-674 12-60 (62)
163 1g47_A Pinch protein; LIM doma 21.7 63 0.0021 25.6 3.1 41 627-676 10-50 (77)
164 2d8y_A Eplin protein; LIM doma 20.4 56 0.0019 27.1 2.6 27 629-657 16-42 (91)
165 2d8x_A Protein pinch; LIM doma 20.2 42 0.0014 26.3 1.7 11 650-660 51-61 (70)
166 2l4z_A DNA endonuclease RBBP8, 20.2 35 0.0012 30.5 1.4 39 628-676 61-99 (123)
167 1wyh_A SLIM 2, skeletal muscle 20.1 60 0.0021 25.4 2.6 27 630-657 7-33 (72)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.51 E-value=1e-14 Score=126.37 Aligned_cols=77 Identities=29% Similarity=0.567 Sum_probs=61.8
Q ss_pred CCCCCCHHHHHHHhhhccCCCcccCCCCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 599 VSTGLNEETIMKIMKQKRYPSLEIEIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 599 vstGlSeE~I~kllk~~ky~~~e~e~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~llp 677 (678)
...+++++.|..++... + ........++..|+||+++|..++.+..|+|||.||..||.+||+.+..||+||+.+.+
T Consensus 13 ~~~~~s~~~i~~lp~~~-~-~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 13 ANPPASKESIDALPEIL-V-TEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCCCHHHHHTSCEEE-C-CTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCHHHHHhCCCee-e-cccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 45688888887765443 3 12223345567899999999998889999999999999999999999999999998864
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=113.75 Aligned_cols=53 Identities=36% Similarity=0.922 Sum_probs=48.3
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~llp 677 (678)
...+..|+||+++|..++.+..|+|+|+||..||.+|++.+..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 44567899999999999888999999999999999999999999999998764
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=1.9e-13 Score=111.44 Aligned_cols=55 Identities=35% Similarity=0.794 Sum_probs=48.7
Q ss_pred CCCCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 623 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 623 e~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~llp 677 (678)
+.......|+||++.|..++.++.++|||+||..||.+|++.+..||+||+.+..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 3445567899999999988888999999999999999999999999999998754
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=8.1e-14 Score=115.79 Aligned_cols=53 Identities=32% Similarity=0.943 Sum_probs=48.6
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~llp 677 (678)
..+...|+||+++|..++.+..|+|+|+||..||.+||+.+..||+||+.+.+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 44567899999999999889999999999999999999999999999998865
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.39 E-value=1.5e-13 Score=107.13 Aligned_cols=51 Identities=37% Similarity=0.987 Sum_probs=46.5
Q ss_pred CCCCccccccccccCCCceEEeC-CCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~Lp-CGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
.+...|+||+++|..++.+..++ |||.||..||.+|++.+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 34678999999999988888997 9999999999999999999999999874
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.37 E-value=2.3e-13 Score=113.44 Aligned_cols=54 Identities=33% Similarity=0.815 Sum_probs=48.3
Q ss_pred CCCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~llp 677 (678)
.......|+||++.|..++.+..|+|+|+||..||.+|++.+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 345567899999999998888899999999999999999999999999998753
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.31 E-value=1.7e-12 Score=115.64 Aligned_cols=50 Identities=32% Similarity=0.567 Sum_probs=40.9
Q ss_pred CCCccccccccccCCC---------------ceEEeCCCChhcHHHHHHHHH-----cCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGD---------------NLGILDCGHDFHTNCIKQWLM-----QKNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~gd---------------~V~~LpCGHvFH~~CI~qWL~-----~k~sCPICR~~ll 676 (678)
.++.|+||+++|..+. .+..++|+|+||..||..||. .+..||+||+.+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 3468999999997653 344679999999999999994 5678999998764
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.30 E-value=1.7e-12 Score=101.04 Aligned_cols=50 Identities=28% Similarity=0.665 Sum_probs=43.7
Q ss_pred CCCccccccccccCCC-ceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGD-NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~gd-~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
....|+||+++|...+ .+..++|+|.||..||.+|++.+..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4578999999997644 4677899999999999999999999999999874
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3e-12 Score=108.84 Aligned_cols=52 Identities=31% Similarity=0.854 Sum_probs=42.5
Q ss_pred CCCCCccccccccccC-----------CCceEEe-CCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTD-----------GDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~-----------gd~V~~L-pCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
+.+++.|+||+++|.. ++.++.+ +|+|.||..||.+||+.+.+||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 4456778888888854 3445566 59999999999999999999999999874
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.2e-12 Score=104.24 Aligned_cols=54 Identities=30% Similarity=0.663 Sum_probs=45.8
Q ss_pred CCCCCCccccccccccCC----CceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~g----d~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~llp 677 (678)
...+...|+||++.|.+. +.++.++|||.||..||.+|++.+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345567899999999864 345788999999999999999999999999998753
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.26 E-value=2e-12 Score=105.46 Aligned_cols=52 Identities=29% Similarity=0.655 Sum_probs=45.1
Q ss_pred CCCCccccccccccCC----CceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 626 ~e~e~C~ICLEefe~g----d~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~llp 677 (678)
.++..|+||++.|.+. +.++.++|||.||..||.+|++.+..||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4567899999998763 456788999999999999999999999999998753
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=3.5e-12 Score=104.98 Aligned_cols=49 Identities=22% Similarity=0.420 Sum_probs=43.6
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
..+...|+||++.+.+. +.++|||.||..||.+|+..+..||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 44567899999999776 78899999999999999999999999999874
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.21 E-value=5.2e-12 Score=100.59 Aligned_cols=51 Identities=27% Similarity=0.639 Sum_probs=44.1
Q ss_pred CCCccccccccccCC----CceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 627 e~e~C~ICLEefe~g----d~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~llp 677 (678)
+...|+||++.+..+ +.+..++|||.||..||.+|++.+..||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 356899999999753 446788999999999999999999999999998753
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=102.02 Aligned_cols=51 Identities=25% Similarity=0.530 Sum_probs=44.0
Q ss_pred CCCCCCccccccccccCCCceEEe-CCCChhcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~k~sCPICR~~llp 677 (678)
...+...|+||++.+.++ +.+ +|||.||..||.+|++.+..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred hcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 344567899999999876 565 999999999999999999999999998753
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.20 E-value=9.2e-12 Score=111.93 Aligned_cols=52 Identities=27% Similarity=0.618 Sum_probs=44.4
Q ss_pred CCCCCCccccccccccCCC---------------ceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGD---------------NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 675 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd---------------~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~l 675 (678)
...+++.|+||++.|.... .++.++|+|.||..||.+||+.+.+||+||+..
T Consensus 33 ~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 33 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp ESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred cCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 3456788999999998542 367789999999999999999999999999974
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.18 E-value=1.1e-11 Score=100.60 Aligned_cols=48 Identities=35% Similarity=0.699 Sum_probs=42.4
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
....|+||++.+.++ +..++|||.||..||.+|++.+..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 456899999998754 577899999999999999999999999999764
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.5e-11 Score=102.65 Aligned_cols=54 Identities=26% Similarity=0.633 Sum_probs=45.5
Q ss_pred CCCCCCCccccccccccCCCc-eEEeCCCChhcHHHHHHHHHcC---CCCCCCCCCCC
Q 005771 623 EIPSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLMQK---NLCPICKTTGL 676 (678)
Q Consensus 623 e~~~e~e~C~ICLEefe~gd~-V~~LpCGHvFH~~CI~qWL~~k---~sCPICR~~ll 676 (678)
+...+...|+||++.|.+.+. .+.++|||.||..||.+|++.+ ..||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 344556789999999998654 5788999999999999999976 78999999764
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.8e-11 Score=103.03 Aligned_cols=50 Identities=20% Similarity=0.453 Sum_probs=43.6
Q ss_pred CCCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
.......|+||++.|.++ +.++|||.||..||.+|++....||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 344567899999999776 67899999999999999999999999999863
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.16 E-value=2.3e-11 Score=101.14 Aligned_cols=50 Identities=30% Similarity=0.769 Sum_probs=43.3
Q ss_pred CCCCCCccccccccccCCCceEEeC-CCChhcHHHHHHHHHcC--CCCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK--NLCPICKTTGL 676 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~Lp-CGHvFH~~CI~qWL~~k--~sCPICR~~ll 676 (678)
...+...|+||++.|.++ +.++ |||.||..||..|++.+ ..||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 344567899999999887 7799 99999999999999976 68999999754
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=7.3e-12 Score=102.32 Aligned_cols=49 Identities=41% Similarity=0.931 Sum_probs=43.2
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~llp 677 (678)
..+...|+||++.+.+ +.++|||.||..||.+|+..+..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 3456789999999876 788999999999999999999999999987753
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.7e-11 Score=98.52 Aligned_cols=50 Identities=34% Similarity=0.608 Sum_probs=42.6
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHH---cCCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPICKTTGLP 677 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~---~k~sCPICR~~llp 677 (678)
..+...|+||++.+.+. +.++|||.||..||..|++ .+..||+||+.+..
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 44567899999999865 7789999999999999997 45689999998753
No 22
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.1e-11 Score=102.66 Aligned_cols=52 Identities=35% Similarity=0.770 Sum_probs=43.8
Q ss_pred CCCCCCccccccccccCCCceEEeCCC-----ChhcHHHHHHHHHcCC--CCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGILDCG-----HDFHTNCIKQWLMQKN--LCPICKTTGL 676 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~LpCG-----HvFH~~CI~qWL~~k~--sCPICR~~ll 676 (678)
...+...|.||+++|..++.+ .+||+ |.||..||.+||..+. .||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 345567899999999877666 58996 9999999999999764 8999999874
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.11 E-value=2.2e-11 Score=112.75 Aligned_cols=45 Identities=36% Similarity=0.902 Sum_probs=41.3
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
..|+||++.|.++ +.++|||.||..||..|+..+..||+||+.+.
T Consensus 54 ~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4799999999876 78899999999999999999999999999864
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=5.1e-11 Score=96.52 Aligned_cols=50 Identities=22% Similarity=0.514 Sum_probs=42.5
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHH-cCCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGLP 677 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~-~k~sCPICR~~llp 677 (678)
..+...|+||++.+.++ +.++|||.||..||.+|+. .+..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 34567899999999887 5589999999999999995 56789999998753
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.09 E-value=8.7e-11 Score=98.08 Aligned_cols=49 Identities=31% Similarity=0.597 Sum_probs=43.1
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHc------CCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ------KNLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~------k~sCPICR~~ll 676 (678)
..+...|+||++.|.++ +.++|||.||..||..|+.. ...||+||+.+.
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 44567899999999887 67899999999999999998 678999999874
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.08 E-value=7.3e-11 Score=98.28 Aligned_cols=48 Identities=27% Similarity=0.484 Sum_probs=42.8
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHc-CCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 676 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~-k~sCPICR~~ll 676 (678)
.+...|+||++.|.++ +.++|||.||..||.+|+.. +..||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 4567899999999887 77899999999999999997 788999999874
No 27
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.06 E-value=1.8e-11 Score=112.21 Aligned_cols=53 Identities=26% Similarity=0.607 Sum_probs=3.2
Q ss_pred CCCCCCCccccccccccCCC---------------ceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCC
Q 005771 623 EIPSDEEPCCICQEEYTDGD---------------NLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 675 (678)
Q Consensus 623 e~~~e~e~C~ICLEefe~gd---------------~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~l 675 (678)
..+..++.|+||+++|.... .+..++|+|.||..||.+||+.+.+||+||+..
T Consensus 43 ~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 43 AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp EECCCC--------------------------------------------------------------
T ss_pred eecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 34456789999999997532 233458999999999999999999999999874
No 28
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.4e-10 Score=93.01 Aligned_cols=45 Identities=33% Similarity=0.651 Sum_probs=39.0
Q ss_pred CCCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHH---cCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPIC 671 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~---~k~sCPIC 671 (678)
...+...|+||++.+.++ +.++|||.||..||.+|++ .+..||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345567899999999877 7789999999999999998 45689998
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.1e-10 Score=97.43 Aligned_cols=49 Identities=33% Similarity=0.685 Sum_probs=42.9
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHc------CCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ------KNLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~------k~sCPICR~~ll 676 (678)
..+...|+||++.+.+. +.++|||.||..||..|+.. +..||+||+.+.
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred ccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 44567899999999876 66799999999999999997 788999999875
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.04 E-value=8.2e-11 Score=103.42 Aligned_cols=46 Identities=28% Similarity=0.708 Sum_probs=40.9
Q ss_pred CCccccccccccCCCceEE-eCCCChhcHHHHHHHHHcC-CCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~-LpCGHvFH~~CI~qWL~~k-~sCPICR~~ll 676 (678)
...|+||++.|.++ +. ++|||.||..||.+|+..+ ..||+||+.+.
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 46799999999876 56 8999999999999999987 69999999864
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.03 E-value=1.6e-10 Score=99.11 Aligned_cols=49 Identities=31% Similarity=0.773 Sum_probs=42.7
Q ss_pred CCCCCCccccccccccCCCceEEeC-CCChhcHHHHHHHHHcC--CCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK--NLCPICKTTG 675 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~Lp-CGHvFH~~CI~qWL~~k--~sCPICR~~l 675 (678)
...+...|+||++.|.++ +.++ |||.||..||..|+... ..||+||+.+
T Consensus 9 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 345668899999999987 7889 99999999999999854 5899999986
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.02 E-value=4.6e-11 Score=99.23 Aligned_cols=49 Identities=35% Similarity=0.642 Sum_probs=42.5
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHc-------CCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-------KNLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~-------k~sCPICR~~ll 676 (678)
..+...|+||++.|.++ +.++|||.||..||..|+.. ...||+||+.+.
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 34567899999999887 56899999999999999987 668999999874
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.01 E-value=1.1e-10 Score=104.93 Aligned_cols=50 Identities=28% Similarity=0.674 Sum_probs=44.3
Q ss_pred CCCccccccccccCC----CceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~g----d~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
+...|+||++.|.++ +.++.++|||.||..||.+||+.+..||+||+.+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 457899999999764 45688899999999999999999999999999875
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.00 E-value=1.5e-10 Score=100.92 Aligned_cols=46 Identities=33% Similarity=0.704 Sum_probs=41.1
Q ss_pred CCccccccccccCCCceEEe-CCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
...|+||++.|.++ +.+ +|||.||..||..|+..+..||+||+.+.
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 22 LLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 46799999999876 566 89999999999999999999999999764
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.00 E-value=1.7e-10 Score=102.24 Aligned_cols=47 Identities=28% Similarity=0.719 Sum_probs=42.0
Q ss_pred CCCccccccccccCCCceEEe-CCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
+...|+||++.|.++ +.+ +|||.||..||..|+..+..||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 456899999999876 666 99999999999999999999999999875
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.1e-10 Score=89.88 Aligned_cols=45 Identities=33% Similarity=0.887 Sum_probs=38.1
Q ss_pred CCCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHH---cCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPIC 671 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~---~k~sCPIC 671 (678)
...+...|+||++.+.++ +.++|||.||..||.+|+. .+..||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 344567899999999887 6689999999999999954 56789998
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.97 E-value=2.4e-10 Score=103.54 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=40.6
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC-CCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~-sCPICR~~ll 676 (678)
...|+||++.|.++ +.++|||.||..||..|+..+. .||+||+.+.
T Consensus 52 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 35799999999876 7789999999999999998554 8999999874
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.93 E-value=3.7e-10 Score=107.07 Aligned_cols=47 Identities=28% Similarity=0.590 Sum_probs=40.7
Q ss_pred CCCccccccccccCCCceEEe-CCCChhcHHHHHHHHHc-CCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~-k~sCPICR~~ll 676 (678)
+...|+||++.|.++ +.+ +|||.||..||..|+.. +..||+||..+.
T Consensus 53 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 345899999999875 555 99999999999999997 778999999874
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=5.7e-10 Score=90.05 Aligned_cols=50 Identities=24% Similarity=0.588 Sum_probs=40.7
Q ss_pred CCCccccccc-cccCCCce-EEeCCCChhcHHHHHHHHHc-CCCCCCCCCCCC
Q 005771 627 DEEPCCICQE-EYTDGDNL-GILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLE-efe~gd~V-~~LpCGHvFH~~CI~qWL~~-k~sCPICR~~ll 676 (678)
++..|+||++ .+..+... +.++|||.||..||.+|+.. +..||+||+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 3568999999 77776543 45799999999999999775 467999999875
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=4.8e-10 Score=98.93 Aligned_cols=45 Identities=33% Similarity=0.606 Sum_probs=39.8
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC---CCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN---LCPICKTTGL 676 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~---sCPICR~~ll 676 (678)
..|+||++.+.++ +.++|||.||..||..|+..+. .||+||..+.
T Consensus 22 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 22 LECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp TSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4799999999877 5689999999999999999764 8999999765
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.90 E-value=6.8e-10 Score=104.90 Aligned_cols=46 Identities=22% Similarity=0.460 Sum_probs=40.7
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC-CCCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGLP 677 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~-sCPICR~~llp 677 (678)
..|+||++.|.++ +.++|||.||..||..|+.... .||+||..+..
T Consensus 79 ~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 5799999999877 7789999999999999999765 79999998753
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.89 E-value=7e-10 Score=99.96 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=43.3
Q ss_pred CCCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC-CCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGL 676 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~-sCPICR~~ll 676 (678)
...+...|+||++.+.++ +.++|||.||..||.+|+..+. .||+||..+.
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 344567899999999877 7789999999999999999765 8999999875
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.88 E-value=6.7e-10 Score=99.72 Aligned_cols=53 Identities=28% Similarity=0.633 Sum_probs=45.1
Q ss_pred CCCCCccccccccccCC----CceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDG----DNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~g----d~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~llp 677 (678)
..+...|+||++.|... ..++.++|||.||..||.+||+.++.||+||+.+..
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 34567899999998753 345788999999999999999999999999998753
No 44
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.86 E-value=1.4e-09 Score=93.41 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=44.2
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
..+...|+||++.|.++ +.++|||.||..||..||..+.+||+||..+.
T Consensus 11 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CchheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 34567899999999998 88999999999999999999899999999764
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.86 E-value=3.6e-10 Score=101.00 Aligned_cols=47 Identities=26% Similarity=0.569 Sum_probs=41.4
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHc-CCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTG 675 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~-k~sCPICR~~l 675 (678)
.++..|+||++.|.++ +.|+|||.||..||..|+.. +..||+||+.+
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 3456799999999887 78899999999999999986 66899999976
No 46
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=1.8e-09 Score=91.60 Aligned_cols=50 Identities=24% Similarity=0.616 Sum_probs=42.2
Q ss_pred CCCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcC--CCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--NLCPICKTTG 675 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k--~sCPICR~~l 675 (678)
.......|.||++.+..+ +....|+|.||..||.+||+.+ .+||+||+..
T Consensus 11 y~~~i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp CSSSSCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred ccCCCCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 345668899999999876 3444899999999999999987 8899999875
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.81 E-value=1.8e-09 Score=96.63 Aligned_cols=46 Identities=28% Similarity=0.569 Sum_probs=41.1
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHHc-CCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~-k~sCPICR~~ll 676 (678)
...|+||++.+.++ +.++|||.||..||.+|+.. +..||+||+.+.
T Consensus 23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 46799999999876 67899999999999999997 778999999864
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.80 E-value=2.1e-09 Score=95.29 Aligned_cols=48 Identities=21% Similarity=0.112 Sum_probs=43.8
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
.+...|+||++.|.++ +.++|||.||..||..||..+.+||+||.++.
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 4567899999999998 88999999999999999998899999999864
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.80 E-value=3.3e-09 Score=93.80 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=43.8
Q ss_pred CCCCccccccccccCCCceEEeCCC-ChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCG-HDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCG-HvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
.++..|+||++.|+++ +.++|| |.||..||..||..+.+||+||.++.
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 4567899999999998 889999 99999999999998889999999874
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.78 E-value=4.9e-09 Score=105.11 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=42.7
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcC-CCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k-~sCPICR~~ll 676 (678)
......|+||++.|.++ +.++|||.||..||..|+... ..||+||.++.
T Consensus 205 ~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 34567899999999998 889999999999999999974 45999999874
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.76 E-value=3.2e-09 Score=114.66 Aligned_cols=46 Identities=33% Similarity=0.689 Sum_probs=41.2
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHH-cCCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~-~k~sCPICR~~ll 676 (678)
...|+||++.+.+. +.++|||.||..||..|+. .+..||+||+.+.
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 46899999998665 8899999999999999999 7889999999874
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.76 E-value=2.8e-09 Score=86.96 Aligned_cols=47 Identities=32% Similarity=0.658 Sum_probs=40.7
Q ss_pred CCCccccccccccCCCceEEe--CCCCh-hcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGIL--DCGHD-FHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~L--pCGHv-FH~~CI~qWL~~k~sCPICR~~ll 676 (678)
++..|.||++.+.+. +.+ ||||. ||..|+..|++.+..||+||+.+.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456899999997665 555 99999 899999999999999999999874
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.70 E-value=4.6e-09 Score=85.42 Aligned_cols=47 Identities=30% Similarity=0.627 Sum_probs=40.4
Q ss_pred CCCccccccccccCCCceEEe--CCCCh-hcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGIL--DCGHD-FHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~L--pCGHv-FH~~CI~qWL~~k~sCPICR~~ll 676 (678)
....|.||++...+. ..+ ||||. ||..|+..|.+....||+||+.+.
T Consensus 6 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 456899999987664 455 99999 999999999998889999999874
No 54
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.70 E-value=9.1e-09 Score=87.53 Aligned_cols=52 Identities=23% Similarity=0.449 Sum_probs=39.7
Q ss_pred CCCCCccccccccccCCCc-eEEeCCCChhcHHHHHHHHHc-CCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~-V~~LpCGHvFH~~CI~qWL~~-k~sCPICR~~ll 676 (678)
..++..|+||++.+...+. +..++|||.||..||..|+.. ...||+||+.+.
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 3456789999999865432 222359999999999999853 567999999764
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.69 E-value=2.1e-09 Score=100.71 Aligned_cols=48 Identities=21% Similarity=0.488 Sum_probs=41.9
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC-CCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTG 675 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~-sCPICR~~l 675 (678)
..+...|+||++.+.++ +.++|||.||..||.+|+..+. .||+||.++
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 34567899999999887 7789999999999999998765 899999864
No 56
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.69 E-value=2.8e-09 Score=84.40 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=38.9
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
.+...|+||++.|.++ +.|+|||.||..||..| +..||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 4567899999999987 77899999999999884 678999999764
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.65 E-value=3.3e-09 Score=95.42 Aligned_cols=44 Identities=27% Similarity=0.613 Sum_probs=39.3
Q ss_pred CCccccccccccCCCceEEe-CCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
...|+||++.|.++ +.+ +|||.||..||..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 46799999999887 677 9999999999999998 78999999764
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.63 E-value=5.9e-09 Score=87.00 Aligned_cols=42 Identities=29% Similarity=0.597 Sum_probs=37.2
Q ss_pred CCccccccccccCCCceEEeCCCCh-hcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHv-FH~~CI~qWL~~k~sCPICR~~ll 676 (678)
+..|.||++.+.+. +.++|||. ||..|+..| ..||+||+.+.
T Consensus 24 ~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 35799999998765 78899999 999999999 88999999874
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=1.3e-08 Score=88.77 Aligned_cols=46 Identities=28% Similarity=0.573 Sum_probs=39.7
Q ss_pred CCCCccccccccccCCCceEEeC-CCChhcHHHHHHHHHcC------CCCCC--CCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILD-CGHDFHTNCIKQWLMQK------NLCPI--CKTT 674 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~Lp-CGHvFH~~CI~qWL~~k------~sCPI--CR~~ 674 (678)
.....|+||++.|.++ +.++ |||.||..||..||..+ ..||+ |++.
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3457899999999988 7885 99999999999999864 48999 9865
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.56 E-value=2.4e-08 Score=94.95 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=43.1
Q ss_pred CCCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC-CCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN-LCPICKTTGL 676 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~-sCPICR~~ll 676 (678)
...+...|+||++.+.++ +.++|||.||..||.+|+..+. .||+||..+.
T Consensus 14 ~~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 345567899999999887 6789999999999999998654 8999999864
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.52 E-value=5.2e-08 Score=95.25 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=42.3
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcC-CCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK-NLCPICKTTGL 676 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k-~sCPICR~~ll 676 (678)
.....|+||++.|.++ +.++|||.||..||..||... .+||+|+.++.
T Consensus 104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 4567899999999988 888999999999999999874 46999999764
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.45 E-value=3.3e-08 Score=105.11 Aligned_cols=52 Identities=27% Similarity=0.620 Sum_probs=40.3
Q ss_pred CCCCCccccccccccCCCceE-----EeCCCChhcHHHHHHHHHcC-----------CCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLG-----ILDCGHDFHTNCIKQWLMQK-----------NLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~-----~LpCGHvFH~~CI~qWL~~k-----------~sCPICR~~ll 676 (678)
.....+|+||++.+.....+. ..+|+|.||..||.+||+.. ..||.||+++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 345678999999998743332 23799999999999999852 45999999763
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.6e-07 Score=77.65 Aligned_cols=47 Identities=23% Similarity=0.614 Sum_probs=38.7
Q ss_pred CCCCCCccccccccccCCCceEEeCCCCh-hcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~LpCGHv-FH~~CI~qWL~~k~sCPICR~~llp 677 (678)
...+...|.||++...+. +.+||||. ||..|+.. ...||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 344567899999987664 88899999 99999984 5789999998753
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=7.2e-08 Score=80.38 Aligned_cols=42 Identities=26% Similarity=0.545 Sum_probs=35.5
Q ss_pred CccccccccccCCCceEEeCCCCh-hcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHv-FH~~CI~qWL~~k~sCPICR~~llp 677 (678)
..|+||++.+.+. +.++|||. ||..|+.. ...||+||+.+..
T Consensus 26 ~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 4699999998765 67899999 99999964 4789999998753
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.35 E-value=9e-08 Score=82.86 Aligned_cols=48 Identities=29% Similarity=0.554 Sum_probs=38.6
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcC--------CCCCC--CCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK--------NLCPI--CKTT 674 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k--------~sCPI--CR~~ 674 (678)
+...|+||++++..++.+..++|||.||..||..+++.+ -.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 356899999999876444444799999999999999742 35999 9987
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.30 E-value=2.3e-07 Score=75.45 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=40.9
Q ss_pred CccccccccccCCCceEEe-CCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
..|+||++.++++ +.+ +|||+|++.||.+||+.+..||++++++.
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 5799999999987 777 89999999999999998888999999874
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.28 E-value=1.9e-07 Score=79.18 Aligned_cols=41 Identities=29% Similarity=0.716 Sum_probs=35.7
Q ss_pred CccccccccccCCCceEEeCCCCh-hcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHv-FH~~CI~qWL~~k~sCPICR~~ll 676 (678)
..|.||++.+.+. +.+||||. ||..|+..| ..||+||+.+.
T Consensus 19 ~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 19 MLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp TBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 4799999988665 88899999 999999987 38999999764
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.25 E-value=4.6e-07 Score=73.57 Aligned_cols=48 Identities=31% Similarity=0.746 Sum_probs=37.1
Q ss_pred CCCCccccccccccCCCceEEeCCC--C---hhcHHHHHHHHHc--CCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCG--H---DFHTNCIKQWLMQ--KNLCPICKTTGL 676 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCG--H---vFH~~CI~qWL~~--k~sCPICR~~ll 676 (678)
.+...|.||+++.. +.+ .+||. | .||..||.+|+.. +..||+||+.+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 35568999999843 334 57855 4 8999999999985 567999998764
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.23 E-value=3.6e-07 Score=94.14 Aligned_cols=47 Identities=28% Similarity=0.450 Sum_probs=39.7
Q ss_pred CCCccccccccccCCCceEE-eCCCChhcHHHHHHHHHcC--CCCCC--CCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQWLMQK--NLCPI--CKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~-LpCGHvFH~~CI~qWL~~k--~sCPI--CR~~ll 676 (678)
....|+||++.|.++ +. +.|||.||..||..|+..+ ..||+ ||+.+.
T Consensus 180 ~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 446799999999888 55 5899999999999999864 46999 998653
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.18 E-value=2.6e-07 Score=98.40 Aligned_cols=43 Identities=26% Similarity=0.651 Sum_probs=37.9
Q ss_pred CCCccccccccccCCCceEEeCCCCh-hcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHD-FHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHv-FH~~CI~qWL~~k~sCPICR~~ll 676 (678)
++..|+||++.+.+. +.+||||. ||..|+..| ..||+||..+.
T Consensus 294 ~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 356899999999775 78899999 999999998 78999999874
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.67 E-value=2.2e-05 Score=70.14 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=37.5
Q ss_pred ccccccccccCCCceEEeCCCChhcHHHHHHHHHc-CCCCCCCCCCCC
Q 005771 630 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ-KNLCPICKTTGL 676 (678)
Q Consensus 630 ~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~-k~sCPICR~~ll 676 (678)
.|.+|--.+..- .+.+||+|+||.+|+..|.++ .+.||.|+.++.
T Consensus 3 fC~~C~~Pi~iy--gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVY--GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEE--EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEE--eeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 488888887653 477799999999999999875 578999999874
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.34 E-value=9.9e-05 Score=74.88 Aligned_cols=47 Identities=23% Similarity=0.608 Sum_probs=38.9
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC--CCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN--LCPICKTTG 675 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~--sCPICR~~l 675 (678)
....|.||.+-+..+ +.+-.|+|.||..|+..|++.+. .||.|+..-
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 467899999999877 33335999999999999998654 899999853
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.43 E-value=0.033 Score=48.13 Aligned_cols=35 Identities=14% Similarity=0.456 Sum_probs=27.4
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHH
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW 661 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qW 661 (678)
++..|.||++.|........+.|+|.||..|+..|
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 34679999987654444455899999999999983
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.05 E-value=0.061 Score=44.37 Aligned_cols=50 Identities=22% Similarity=0.426 Sum_probs=35.8
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC----CCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKTTGLP 677 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~----sCPICR~~llp 677 (678)
......|.||.+. ++.+..-.|...||..|+...|.... .||.|+....|
T Consensus 9 ~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 9 LAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp CCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 3445679999753 33333336999999999998887543 49999876554
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.77 E-value=0.029 Score=49.67 Aligned_cols=46 Identities=33% Similarity=0.632 Sum_probs=37.4
Q ss_pred CCCCccccccccccCCCceEEeCC-CChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDC-GHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpC-GHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
..-..|-.|.-+.+ ..+.| .|.+|..|+.-.|.....||||++++.
T Consensus 26 ~G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 26 LGPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp SCCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cCcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 34567999987754 25566 599999999999999999999999763
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.98 E-value=0.26 Score=53.14 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=32.6
Q ss_pred CccccccccccCCCceEEeCCCCh--hcHHHHHHHHHcCC--CCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHD--FHTNCIKQWLMQKN--LCPICKTTGL 676 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHv--FH~~CI~qWL~~k~--sCPICR~~ll 676 (678)
..|+|-+..+..+ ++-..|.|+ |-..-+.+...++. .||+|.+.+.
T Consensus 250 L~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 5799988888777 566689999 55554554444433 4999998764
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=85.35 E-value=0.56 Score=50.35 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=33.4
Q ss_pred CccccccccccCCCceEEeCCCCh--hcHHHHHHHHHcCC--CCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHD--FHTNCIKQWLMQKN--LCPICKTTGL 676 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHv--FH~~CI~qWL~~k~--sCPICR~~ll 676 (678)
..|+|-+..+..+ ++-..|.|+ |-..-+.+...++. .||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 5699988888777 566689999 66655555554443 4999998764
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=85.13 E-value=0.12 Score=41.67 Aligned_cols=49 Identities=24% Similarity=0.507 Sum_probs=34.9
Q ss_pred CCCCccccccccccCCCceEEe-CCCChhcHHHHHHHHH-----cCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM-----QKNLCPICKTT 674 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~-----~k~sCPICR~~ 674 (678)
.+...|+||...+.++..++.- .|...||..|+.--.. .+..||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4556799999998655545444 6999999999864322 34569999653
No 79
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=84.36 E-value=0.65 Score=40.47 Aligned_cols=38 Identities=24% Similarity=0.555 Sum_probs=26.0
Q ss_pred CCCCCCCccccccccccCCCceEEeCCCChhcHHHHHHH
Q 005771 623 EIPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW 661 (678)
Q Consensus 623 e~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qW 661 (678)
+....++.|.||-. |...+....--|+-+||..|+++-
T Consensus 10 e~~~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 34456788999863 334432333358999999999996
No 80
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.87 E-value=1.1 Score=37.56 Aligned_cols=47 Identities=21% Similarity=0.399 Sum_probs=32.2
Q ss_pred CCccccccccccCCCceEEe-CCCChhcHHHHHHHHH-----cCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM-----QKNLCPICKTTG 675 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~-----~k~sCPICR~~l 675 (678)
...| ||...+.....++.- .|...||..|+.--.. .+..||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3445 999988644444444 6999999999953221 345699998754
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=81.81 E-value=0.59 Score=37.60 Aligned_cols=48 Identities=23% Similarity=0.619 Sum_probs=33.1
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcC----CCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKTTG 675 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k----~sCPICR~~l 675 (678)
...+..|.||... ++.+..-.|...||..|+..-|... -.||.|++.-
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~g 59 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG 59 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGGS
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccccc
Confidence 3456789999873 3333333699999999999865432 2499998753
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=81.03 E-value=0.57 Score=36.00 Aligned_cols=44 Identities=25% Similarity=0.661 Sum_probs=30.0
Q ss_pred ccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC----CCCCCCC
Q 005771 630 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKT 673 (678)
Q Consensus 630 ~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~----sCPICR~ 673 (678)
.|.||...-..++.+..-.|...||..|+..=|.... .||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5889987644333333336999999999976444322 3999976
No 83
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=80.65 E-value=0.66 Score=55.42 Aligned_cols=49 Identities=18% Similarity=0.103 Sum_probs=43.0
Q ss_pred CCCCCccccccccccCCCceEEeCCC-ChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCG-HDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCG-HvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
.-+...|+|-++-+.++ +.++.| +.|-..+|.+||..+.+||+=|.++.
T Consensus 888 iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp SCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 34567799999999998 889997 58999999999999999999998764
No 84
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=77.15 E-value=1.7 Score=33.77 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=30.8
Q ss_pred ccccccccccCCCceEEe--CCCChhcHHHHHHH----HHcCCCCCCCC
Q 005771 630 PCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQW----LMQKNLCPICK 672 (678)
Q Consensus 630 ~C~ICLEefe~gd~V~~L--pCGHvFH~~CI~qW----L~~k~sCPICR 672 (678)
.|.||...+.+++.++.- .|.-.||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 588999998766555544 49989999998532 13567799996
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=77.10 E-value=0.37 Score=38.83 Aligned_cols=48 Identities=29% Similarity=0.674 Sum_probs=32.8
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC----CCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKTTGL 676 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~----sCPICR~~ll 676 (678)
..+..|.||.+. ++.+..-.|...||..|+..-|.... .||.|+...+
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 346679999863 33333336999999999986554322 4999987654
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=74.13 E-value=0.65 Score=38.40 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=33.8
Q ss_pred CCCCCccccccccccCCCceEEe-CCCChhcHHHHHHHHHc----CCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ----KNLCPICKTTG 675 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~----k~sCPICR~~l 675 (678)
..+...|.||..... ++.++.- .|.-.||..|+..-+.. .-.||.|+..+
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 334556999988764 3334333 69999999999765442 33599997643
No 87
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.82 E-value=0.89 Score=37.80 Aligned_cols=48 Identities=25% Similarity=0.515 Sum_probs=31.6
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHH------H---HcCCCCCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQW------L---MQKNLCPICKTTGLP 677 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qW------L---~~k~sCPICR~~llp 677 (678)
..| ||...+..+.-|..-.|...||..|+.-- | ..+..||.|+..-.|
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 345 99988764332333369999999999421 1 246779999865443
No 88
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=73.04 E-value=0.97 Score=39.68 Aligned_cols=47 Identities=26% Similarity=0.437 Sum_probs=31.1
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHH---cCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM---QKNLCPICKTT 674 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~---~k~sCPICR~~ 674 (678)
+...| ||-.....+.-|..-.|.-.||..|+..=+. ..-.||.|+..
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 33456 8987765554333336999999999865332 23469999854
No 89
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=71.42 E-value=0.29 Score=40.46 Aligned_cols=50 Identities=30% Similarity=0.444 Sum_probs=34.0
Q ss_pred CCCccccccccccCCCceEEe-CCCChhcHHHHHHHH----HcCCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWL----MQKNLCPICKTTGLP 677 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL----~~k~sCPICR~~llp 677 (678)
....| ||...+..++.++.- .|...||..|+.--. ..+..||.|+....|
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 34557 798887666544444 699999999986432 234569999876554
No 90
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.47 E-value=0.35 Score=38.14 Aligned_cols=46 Identities=26% Similarity=0.696 Sum_probs=31.5
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC----CCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKT 673 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~----sCPICR~ 673 (678)
...+..|.||... ++.+..-.|...||..|+.+-|.... .||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456779999974 33333336999999999986554322 3888864
No 91
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=66.56 E-value=1.4 Score=38.92 Aligned_cols=38 Identities=21% Similarity=0.471 Sum_probs=27.7
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHHHHH
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM 663 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~ 663 (678)
..+..|.||.+.=+..+.+..-.|+..||..||...+.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 45678999988743333345557999999999987764
No 92
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=65.48 E-value=4.2 Score=33.26 Aligned_cols=34 Identities=29% Similarity=0.602 Sum_probs=25.3
Q ss_pred CCCCccccccccccCCCceEEe--CCCChhcHHHHH
Q 005771 626 SDEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIK 659 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~L--pCGHvFH~~CI~ 659 (678)
.....|.+|...+...+.++.- .|.-.||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3457899999998776655544 699999999983
No 93
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=65.35 E-value=1.6 Score=38.15 Aligned_cols=48 Identities=25% Similarity=0.560 Sum_probs=33.1
Q ss_pred CCCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC----CCCCCCCC
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKTT 674 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~----sCPICR~~ 674 (678)
....+..|.||... ++.+..-.|--.||..|+.+=|.... .||.|+..
T Consensus 21 ~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 34456789999964 33333336999999999977665422 49999853
No 94
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=61.63 E-value=7.1 Score=33.82 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=30.1
Q ss_pred CCCCccccccccccCCCceEEe-CCCChhcHHHHHHHHHc
Q 005771 626 SDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ 664 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~ 664 (678)
.....|.+|.|.+++..-|.+- .=.|.||..|-+..++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 4557899999999987544322 14799999999999985
No 95
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.11 E-value=3.5 Score=36.08 Aligned_cols=43 Identities=30% Similarity=0.760 Sum_probs=27.3
Q ss_pred CccccccccccCCCceEEeC--CC-ChhcHHHHHHHHHc----CCCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILD--CG-HDFHTNCIKQWLMQ----KNLCPICKTTG 675 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~Lp--CG-HvFH~~CI~qWL~~----k~sCPICR~~l 675 (678)
..| ||..... ++-|..=. |. ..||..||. |.. +-.||.|+...
T Consensus 37 ~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 37 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp BCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred cEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 345 9988753 33222224 65 689999997 443 33599998754
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=60.23 E-value=2 Score=38.37 Aligned_cols=45 Identities=27% Similarity=0.724 Sum_probs=30.5
Q ss_pred CccccccccccCCCceEEe-CCCChhcHHHHHHHHHcC----CCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQK----NLCPICKT 673 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~k----~sCPICR~ 673 (678)
..|.||.+.-.+.+.+..- .|...||..|+.+-|... =.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3688998753333333333 699999999997655532 24999986
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=60.07 E-value=10 Score=33.62 Aligned_cols=33 Identities=24% Similarity=0.568 Sum_probs=22.9
Q ss_pred CCCcccccccccc-----CC-CceEEeCCCChhcHHHHH
Q 005771 627 DEEPCCICQEEYT-----DG-DNLGILDCGHDFHTNCIK 659 (678)
Q Consensus 627 e~e~C~ICLEefe-----~g-d~V~~LpCGHvFH~~CI~ 659 (678)
....|.+|+..-. .+ +.+..-.|+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3467999987631 22 334444799999999995
No 98
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.24 E-value=0.82 Score=39.80 Aligned_cols=48 Identities=25% Similarity=0.495 Sum_probs=31.9
Q ss_pred CCCCCccccccccccCCCceEEe-CCCChhcHHHHHHHHHcCC----CCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQKN----LCPICKT 673 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~k~----sCPICR~ 673 (678)
..+...|.||...-... .++.- .|...||..|+.+=|.... .||.|+.
T Consensus 13 ~~~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 34556799999875332 33333 6999999999975444322 3999964
No 99
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=55.91 E-value=1.2 Score=35.43 Aligned_cols=44 Identities=27% Similarity=0.721 Sum_probs=30.5
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC----CCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKT 673 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~----sCPICR~ 673 (678)
.+..|.||... ++.+..-.|.-.||..|+.+-|.... .||.|+.
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 45789999874 33333336999999999986554322 3998864
No 100
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=55.83 E-value=1.1 Score=36.53 Aligned_cols=45 Identities=24% Similarity=0.662 Sum_probs=30.9
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC----CCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKT 673 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~----sCPICR~ 673 (678)
..+..|.||.+. ++.+..-.|.-.||..|+..-|.... .||.|..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 356789999864 33333336999999999986554322 3999964
No 101
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=54.25 E-value=4.6 Score=33.48 Aligned_cols=43 Identities=28% Similarity=0.667 Sum_probs=27.6
Q ss_pred CCccccccccccCCCceEEe-C--CC-ChhcHHHHHHHHHc----CCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGIL-D--CG-HDFHTNCIKQWLMQ----KNLCPICKTTG 675 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~L-p--CG-HvFH~~CI~qWL~~----k~sCPICR~~l 675 (678)
...| ||..... + .++.- . |. ..||..||. |.. +-.||.|+...
T Consensus 16 ~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3446 8988643 3 23333 4 66 689999997 443 23599998753
No 102
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=54.02 E-value=1.4 Score=36.26 Aligned_cols=46 Identities=20% Similarity=0.490 Sum_probs=30.5
Q ss_pred CCCCccccccccccCCCceEEe-CCCChhcHHHHHHHHH---cCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM---QKNLCPICKT 673 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~---~k~sCPICR~ 673 (678)
.+...| ||...+. ++.++.- .|...||..|+.--.. .+-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344557 9988765 3334443 6999999999964221 3446999975
No 103
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=52.90 E-value=5.9 Score=35.16 Aligned_cols=48 Identities=27% Similarity=0.542 Sum_probs=33.8
Q ss_pred CCccccccccccCCCceEEe--CCCChhcHHHHHHH------HH----cCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQW------LM----QKNLCPICKTTG 675 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~L--pCGHvFH~~CI~qW------L~----~k~sCPICR~~l 675 (678)
...|.||...|.+...++.- .|.-.||..|+.-= |. .+-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 45799999998766555554 59999999998421 10 345699997543
No 104
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=51.82 E-value=2.8 Score=39.84 Aligned_cols=32 Identities=22% Similarity=0.496 Sum_probs=24.8
Q ss_pred CCCcccccccccc--CCCceEEeCCCChhcHHHH
Q 005771 627 DEEPCCICQEEYT--DGDNLGILDCGHDFHTNCI 658 (678)
Q Consensus 627 e~e~C~ICLEefe--~gd~V~~LpCGHvFH~~CI 658 (678)
.+..|.+|+..|. .+....+..|.|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 5678999999875 3334555689999999996
No 105
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=48.56 E-value=4.1 Score=41.16 Aligned_cols=47 Identities=23% Similarity=0.543 Sum_probs=27.2
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHHc--C---CCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ--K---NLCPICKTT 674 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~--k---~sCPICR~~ 674 (678)
...|.||...-..++.+.+=.|...||..|+.+=|.. + =.||.|+..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3468888775333333333369999999999865543 1 249999764
No 106
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=48.35 E-value=8.7 Score=31.97 Aligned_cols=31 Identities=29% Similarity=0.757 Sum_probs=24.7
Q ss_pred CCCccccccccccCCCceEEeCC-CChhcHHHHHHH
Q 005771 627 DEEPCCICQEEYTDGDNLGILDC-GHDFHTNCIKQW 661 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpC-GHvFH~~CI~qW 661 (678)
+..-|.||.++ ..++.+.| +-+||..|.++-
T Consensus 7 e~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 34569999998 23678899 889999998774
No 107
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=46.03 E-value=8.3 Score=30.82 Aligned_cols=49 Identities=33% Similarity=0.740 Sum_probs=32.3
Q ss_pred CCCCccccccccccC-CCceEEe-CCCChhcHHHHHHHHH-------cCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTD-GDNLGIL-DCGHDFHTNCIKQWLM-------QKNLCPICKTT 674 (678)
Q Consensus 626 ~e~e~C~ICLEefe~-gd~V~~L-pCGHvFH~~CI~qWL~-------~k~sCPICR~~ 674 (678)
..+..|.||...... ...+..- .|.-.||..|+..-|. ..-.||.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456789999987533 2233333 6999999999986432 12249988654
No 108
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=45.27 E-value=4.6 Score=33.80 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=31.0
Q ss_pred CCCccccccccccCCCceEEe--CCCChhcHHHHHHHH---------HcCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWL---------MQKNLCPICKTTG 675 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~L--pCGHvFH~~CI~qWL---------~~k~sCPICR~~l 675 (678)
....| ||-.....+.-|..= .|...||..|+.--- ..+..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34456 898875454333334 599999999995321 1355699997643
No 109
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=45.06 E-value=22 Score=31.32 Aligned_cols=50 Identities=24% Similarity=0.381 Sum_probs=36.3
Q ss_pred CCCccccccccccCCC---c-eEEeCCCChhcHHHHHHHHH-cCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGD---N-LGILDCGHDFHTNCIKQWLM-QKNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~gd---~-V~~LpCGHvFH~~CI~qWL~-~k~sCPICR~~ll 676 (678)
....|-||=+++.... . +..-.|+--.|..|+.-=.+ -...||.|+.+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4578999999976432 2 33346998899999976555 3567999998753
No 110
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=44.47 E-value=21 Score=33.55 Aligned_cols=47 Identities=28% Similarity=0.525 Sum_probs=32.3
Q ss_pred CCCCCccccccccccCCCceEEeCCCChhcHHHHHHHHH-----------cCCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM-----------QKNLCPICKTT 674 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~-----------~k~sCPICR~~ 674 (678)
...+..|.||.+. ++.+..=.|-..||..||..=|. ..=.||+|+..
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3446789999874 33232226999999999997653 12249999864
No 111
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=44.06 E-value=6.2 Score=36.66 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=24.6
Q ss_pred CCCCcccccccccc-C-CCceEEeCCCChhcHHHHH
Q 005771 626 SDEEPCCICQEEYT-D-GDNLGILDCGHDFHTNCIK 659 (678)
Q Consensus 626 ~e~e~C~ICLEefe-~-gd~V~~LpCGHvFH~~CI~ 659 (678)
.....|.+|+..|. . +.......|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 45678999999994 2 2234455799999999844
No 112
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=44.03 E-value=2.2 Score=36.13 Aligned_cols=43 Identities=23% Similarity=0.611 Sum_probs=27.6
Q ss_pred ccccccccccCCCceEEe-CCCChhcHHHHHHHHHcC-----CCCCCCCC
Q 005771 630 PCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQK-----NLCPICKT 673 (678)
Q Consensus 630 ~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~k-----~sCPICR~ 673 (678)
.|.||...-..+ .+..- .|...||..|+..-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 566776653222 23333 699999999998766532 25999985
No 113
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.36 E-value=4.1 Score=34.34 Aligned_cols=45 Identities=24% Similarity=0.549 Sum_probs=29.6
Q ss_pred CCccccccccccCCCceEEe-CCCChhcHHHHHHHHHc-----CCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ-----KNLCPICKT 673 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~-----k~sCPICR~ 673 (678)
+..|.||...-..+ .+..- .|...||..|+.+=|.. .=.||.|+.
T Consensus 26 ~c~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 34788888653333 33333 69999999999865443 124999975
No 114
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.63 E-value=16 Score=30.08 Aligned_cols=41 Identities=29% Similarity=0.558 Sum_probs=28.2
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
.....|..|-+.+...+.+. .-+..||..| ..|-.|++.|.
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~ 53 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLW 53 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCC
T ss_pred CCCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcC
Confidence 34567999999887665443 3467788887 44777776654
No 115
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=41.33 E-value=5.6 Score=42.24 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=0.0
Q ss_pred CCCccccccccccCCCc-eEEeCCCChhcHHHHHHHHH-------cCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWLM-------QKNLCPICKTTG 675 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~-V~~LpCGHvFH~~CI~qWL~-------~k~sCPICR~~l 675 (678)
....|.+|...|..-.. -.+-.||++||..|...++. ..+.|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 45679999999874322 23447999999999987653 234588886544
No 116
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=39.76 E-value=7.4 Score=31.54 Aligned_cols=43 Identities=26% Similarity=0.385 Sum_probs=28.9
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPIC 671 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPIC 671 (678)
..|--|+..+.+......-.|++.||.+|=.---+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999998643212233699999999943323344579988
No 117
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=37.71 E-value=4.1 Score=33.64 Aligned_cols=44 Identities=23% Similarity=0.619 Sum_probs=28.2
Q ss_pred ccccccccccCCCceEEe-CCCChhcHHHHHHHHHc-----CCCCCCCCCC
Q 005771 630 PCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLMQ-----KNLCPICKTT 674 (678)
Q Consensus 630 ~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~~-----k~sCPICR~~ 674 (678)
.|.||...-..+ .+..- .|...||..|+.+=|.. .=.||.|+..
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 566777542222 33333 59999999999865543 2259999864
No 118
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.11 E-value=23 Score=28.44 Aligned_cols=39 Identities=23% Similarity=0.506 Sum_probs=25.9
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
...|..|-+.+..++.+. .-+..||..| ..|-.|++.|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccC
Confidence 457888888887655433 3466788776 34777777654
No 119
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=36.66 E-value=12 Score=33.45 Aligned_cols=42 Identities=31% Similarity=0.710 Sum_probs=26.8
Q ss_pred CCCCCccccccccccCCCceEEeC---CCChhcHHHHHHHHHcCC----CCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGILD---CGHDFHTNCIKQWLMQKN----LCPICK 672 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~Lp---CGHvFH~~CI~qWL~~k~----sCPICR 672 (678)
...+..|.+|.+ .+ +++.-. |-..||..|+. |.... .||.|+
T Consensus 12 ~~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 12 QMHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CSSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 345677999984 23 343433 88999999997 55322 377554
No 120
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=35.43 E-value=3.5 Score=37.79 Aligned_cols=45 Identities=27% Similarity=0.569 Sum_probs=28.5
Q ss_pred CCCccccccccccCCCce-EEeCCCChhcHHHHHHHHHcCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQWLMQKNLCPIC 671 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V-~~LpCGHvFH~~CI~qWL~~k~sCPIC 671 (678)
....|.+|...|..-..- ..-.||.+||..|....+...+.|-.|
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 346799999999753322 333799999999977665545556555
No 121
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=35.12 E-value=27 Score=29.45 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=27.3
Q ss_pred CCCCCCccccccccccCCCceEE-eCCCChhcHHHHHHH
Q 005771 624 IPSDEEPCCICQEEYTDGDNLGI-LDCGHDFHTNCIKQW 661 (678)
Q Consensus 624 ~~~e~e~C~ICLEefe~gd~V~~-LpCGHvFH~~CI~qW 661 (678)
.+.+...|.+|...|..-..--. -.||++||..|....
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34456689999999986433223 369999999997654
No 122
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=34.53 E-value=3.2 Score=36.59 Aligned_cols=44 Identities=23% Similarity=0.501 Sum_probs=28.0
Q ss_pred ccccccccccCCCceEEeCCCChhcHHHHHHHHHcC----CCCCCCCC
Q 005771 630 PCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQK----NLCPICKT 673 (678)
Q Consensus 630 ~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k----~sCPICR~ 673 (678)
.|.||...-.....+..-.|...||..|+.+=|... -.||.|+.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 577787664333223333699999999998655432 24888854
No 123
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.48 E-value=21 Score=29.42 Aligned_cols=40 Identities=25% Similarity=0.553 Sum_probs=27.8
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
....|.-|-+.+..++.+.. -+..||.+| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 35679999998876655444 366788777 45788877653
No 124
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=34.33 E-value=6.5 Score=43.68 Aligned_cols=47 Identities=21% Similarity=0.436 Sum_probs=31.6
Q ss_pred CCccccccccccCCCceEEe-CCCChhcHHHHHHHHH-----cCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM-----QKNLCPICKTT 674 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~-----~k~sCPICR~~ 674 (678)
....|||...+..+..++.. .|.-.||..|+.---. .+-.||.|+..
T Consensus 36 ~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 36 PPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 34455999887644455555 6999999999953221 23469999753
No 125
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=33.37 E-value=29 Score=32.08 Aligned_cols=46 Identities=33% Similarity=0.580 Sum_probs=30.8
Q ss_pred CCCCCccccccccccCCCceEEe-CCCChhcHHHHHHHH------Hc-----CCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWL------MQ-----KNLCPICKTT 674 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL------~~-----k~sCPICR~~ 674 (678)
+..+..|.||.+. + ++..- .|-..||..||..-+ +. .=.|++|+..
T Consensus 54 Dg~~~~C~vC~dG---G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC---S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC---C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3445679999964 3 23333 589999999999752 21 1249999764
No 126
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=32.84 E-value=3.3 Score=33.20 Aligned_cols=40 Identities=30% Similarity=0.742 Sum_probs=25.1
Q ss_pred ccccccccccCCCceEEe-C--CC-ChhcHHHHHHHHHc----CCCCCCCCC
Q 005771 630 PCCICQEEYTDGDNLGIL-D--CG-HDFHTNCIKQWLMQ----KNLCPICKT 673 (678)
Q Consensus 630 ~C~ICLEefe~gd~V~~L-p--CG-HvFH~~CI~qWL~~----k~sCPICR~ 673 (678)
.++||..... + .++.- . |. ..||..|+. |.. +-.||.|+.
T Consensus 11 ~~C~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYCLCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EETTTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEEECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3449988642 3 23333 4 55 689999998 443 234999865
No 127
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=32.64 E-value=13 Score=29.91 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=29.5
Q ss_pred CCCccccccccccCCCceEEeCCCChhcH-HHHHHHHHcCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHT-NCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~-~CI~qWL~~k~sCPICR~~ll 676 (678)
+-..|..|...+.... ....=+.+||. .|..+- ....|-.|...+.
T Consensus 26 ~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~~ 72 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAM--FGPKGFGRGGAES 72 (76)
T ss_dssp TTCBCTTTCCBCCTTT--EEEETTEEEETTTHHHHH--SSCCCSSCCCSSS
T ss_pred CCCCccccCccCCCCc--eECcCCeEeeCHHHHHHH--hCccCCCcCCcee
Confidence 4567888888877652 22345677888 587653 3456888876543
No 128
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=32.64 E-value=31 Score=28.52 Aligned_cols=49 Identities=18% Similarity=0.451 Sum_probs=31.5
Q ss_pred CCCCCccccccccc-cCCCceEEe-CCCChhcHHHHHHHHHc--CCCCCCCCC
Q 005771 625 PSDEEPCCICQEEY-TDGDNLGIL-DCGHDFHTNCIKQWLMQ--KNLCPICKT 673 (678)
Q Consensus 625 ~~e~e~C~ICLEef-e~gd~V~~L-pCGHvFH~~CI~qWL~~--k~sCPICR~ 673 (678)
...+..|.||.+.- .+.+.+..- .|.-.||..|+..-+.- .=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34567899998764 233344444 69999999999753221 124888864
No 129
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.88 E-value=26 Score=29.52 Aligned_cols=36 Identities=17% Similarity=0.452 Sum_probs=25.7
Q ss_pred CCCCCccccccccccCCCce-EEeCCCChhcHHHHHH
Q 005771 625 PSDEEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQ 660 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V-~~LpCGHvFH~~CI~q 660 (678)
+.+...|.+|...|..-..- -.-.||.+||..|...
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34556899999999754322 2336999999999654
No 130
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=31.79 E-value=20 Score=31.86 Aligned_cols=33 Identities=21% Similarity=0.505 Sum_probs=22.7
Q ss_pred Ccccccccccc------CCCc-eEEeCCCChhcHHHHHHH
Q 005771 629 EPCCICQEEYT------DGDN-LGILDCGHDFHTNCIKQW 661 (678)
Q Consensus 629 e~C~ICLEefe------~gd~-V~~LpCGHvFH~~CI~qW 661 (678)
..|.||+..-. ++++ +....|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987641 1223 344479999999999754
No 131
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=31.71 E-value=24 Score=30.20 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=25.2
Q ss_pred CCCCccccccccccCCCceE-EeCCCChhcHHHHHH
Q 005771 626 SDEEPCCICQEEYTDGDNLG-ILDCGHDFHTNCIKQ 660 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~-~LpCGHvFH~~CI~q 660 (678)
.+...|.+|...|..-..-- .-.||++||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 44567999999997643222 236999999999754
No 132
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.36 E-value=17 Score=35.60 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=25.1
Q ss_pred CCccccccccccCCCceE-EeCCCChhcHHHHHHH
Q 005771 628 EEPCCICQEEYTDGDNLG-ILDCGHDFHTNCIKQW 661 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~-~LpCGHvFH~~CI~qW 661 (678)
...|.+|...|..-..-. +-.||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 478999999997543323 3369999999997643
No 133
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=31.05 E-value=24 Score=30.26 Aligned_cols=49 Identities=18% Similarity=0.479 Sum_probs=31.3
Q ss_pred CCCCccccccccc-cCCCceEEe-CCCChhcHHHHHHHHHc--CCCCCCCCCC
Q 005771 626 SDEEPCCICQEEY-TDGDNLGIL-DCGHDFHTNCIKQWLMQ--KNLCPICKTT 674 (678)
Q Consensus 626 ~e~e~C~ICLEef-e~gd~V~~L-pCGHvFH~~CI~qWL~~--k~sCPICR~~ 674 (678)
..+..|.||...- ...+.+..- .|.-.||..|+..-+.- .-.||.|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 4567899999763 222233333 59999999999753321 2249988653
No 134
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=30.78 E-value=23 Score=29.80 Aligned_cols=37 Identities=22% Similarity=0.528 Sum_probs=26.3
Q ss_pred CCCCCccccccccccCCCceE-EeCCCChhcHHHHHHH
Q 005771 625 PSDEEPCCICQEEYTDGDNLG-ILDCGHDFHTNCIKQW 661 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~-~LpCGHvFH~~CI~qW 661 (678)
+.+...|.+|...|..-..-- .-.||.+||..|....
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 344567999999998543222 2369999999997653
No 135
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=30.45 E-value=18 Score=32.88 Aligned_cols=35 Identities=17% Similarity=0.441 Sum_probs=25.4
Q ss_pred CCCccccccccccCCCceE-EeCCCChhcHHHHHHH
Q 005771 627 DEEPCCICQEEYTDGDNLG-ILDCGHDFHTNCIKQW 661 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~-~LpCGHvFH~~CI~qW 661 (678)
+...|.+|...|..-..-. .-.||++||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3467999999997543222 3369999999997553
No 136
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=30.31 E-value=24 Score=30.21 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=26.2
Q ss_pred CCCccccccccccCCCc-eEEeCCCChhcHHHHHHHH
Q 005771 627 DEEPCCICQEEYTDGDN-LGILDCGHDFHTNCIKQWL 662 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~-V~~LpCGHvFH~~CI~qWL 662 (678)
+...|.+|...|..-.. -..-.||++||..|...++
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 44679999999975432 2333799999999976643
No 137
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.98 E-value=34 Score=27.73 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=25.2
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 675 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~l 675 (678)
....|..|-+.+... ....-+..||..|+ .|-.|++.|
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCC
Confidence 456788888887753 23345677888773 477777654
No 138
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=29.96 E-value=19 Score=35.75 Aligned_cols=35 Identities=23% Similarity=0.529 Sum_probs=25.8
Q ss_pred CCCccccccccccCCCce-EEeCCCChhcHHHHHHH
Q 005771 627 DEEPCCICQEEYTDGDNL-GILDCGHDFHTNCIKQW 661 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V-~~LpCGHvFH~~CI~qW 661 (678)
+...|.+|...|..-..- .+-.||++||..|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 346899999999854322 23369999999997654
No 139
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=29.20 E-value=20 Score=32.12 Aligned_cols=11 Identities=36% Similarity=1.117 Sum_probs=10.4
Q ss_pred hcHHHHHHHHH
Q 005771 653 FHTNCIKQWLM 663 (678)
Q Consensus 653 FH~~CI~qWL~ 663 (678)
||..|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 140
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.13 E-value=19 Score=30.81 Aligned_cols=46 Identities=22% Similarity=0.568 Sum_probs=31.0
Q ss_pred CCccccccccccC-CCceEEe-CCCChhcHHHHHHHHHc--------CCCCCCCCC
Q 005771 628 EEPCCICQEEYTD-GDNLGIL-DCGHDFHTNCIKQWLMQ--------KNLCPICKT 673 (678)
Q Consensus 628 ~e~C~ICLEefe~-gd~V~~L-pCGHvFH~~CI~qWL~~--------k~sCPICR~ 673 (678)
+..|.||...-.. .+.+..- .|...||..|+..-|.. .=.|+.|+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 4679999986432 2334343 69999999999875541 124988864
No 141
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.99 E-value=31 Score=28.65 Aligned_cols=39 Identities=21% Similarity=0.398 Sum_probs=22.8
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
....|..|-+.+.. + ....-+..||..| ..|-.|++.|.
T Consensus 24 ~~~~C~~C~~~I~~-~--~v~a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIRG-P--FLVALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCCS-C--EEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCccCCCEecc-e--EEEECCccccccC--------CccCCCCCCCC
Confidence 34567777777742 2 2233466677666 34667766553
No 142
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=28.73 E-value=20 Score=31.99 Aligned_cols=11 Identities=55% Similarity=1.428 Sum_probs=10.4
Q ss_pred hcHHHHHHHHH
Q 005771 653 FHTNCIKQWLM 663 (678)
Q Consensus 653 FH~~CI~qWL~ 663 (678)
||..|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 143
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.12 E-value=40 Score=27.24 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=26.4
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
...|..|-+.+..++.++ ..-+..||..| ..|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDC--------FTCSNCKQVIG 54 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTT--------CCCSSSCCCCT
T ss_pred CCcCccCCcccccCceEE-EECcccccccc--------CchhhCCCccC
Confidence 357888888887654432 23467788776 45777877664
No 144
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.88 E-value=40 Score=27.90 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=27.1
Q ss_pred CCCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
.....|..|-+.+... ....-+..||.+| ..|-.|++.|.
T Consensus 23 ~~~~~C~~C~~~I~~~---~~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGA---VVKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp CSCCBCTTTCCBCCSC---CEESSSCEECTTT--------CCCSSSCCCTT
T ss_pred CcCCCcccCCCEeccc---EEEECCceECccC--------CEecCCCCCCC
Confidence 3446799998888752 2334667888877 45888877664
No 145
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=27.45 E-value=29 Score=28.50 Aligned_cols=32 Identities=19% Similarity=0.461 Sum_probs=23.6
Q ss_pred CccccccccccCCCceE-EeCCCChhcHHHHHH
Q 005771 629 EPCCICQEEYTDGDNLG-ILDCGHDFHTNCIKQ 660 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~-~LpCGHvFH~~CI~q 660 (678)
..|.+|...|..-..-- .-.||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 57999999997543222 236999999999654
No 146
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.13 E-value=38 Score=26.56 Aligned_cols=38 Identities=21% Similarity=0.482 Sum_probs=18.9
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 675 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~l 675 (678)
..|..|-+.+...+.++. .-+..||..| ..|-.|++.|
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L 43 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME-YKGSSWHETC--------FICHRCQQPI 43 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE-ETTEEEETTT--------TCCSSSCCCC
T ss_pred CCCccCCCcccCCceEEE-ECcCeecccC--------CcccccCCcc
Confidence 356666666654432221 2344566555 2355555544
No 147
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=25.61 E-value=5.5 Score=31.84 Aligned_cols=40 Identities=30% Similarity=0.693 Sum_probs=25.7
Q ss_pred CccccccccccCCCceEEe-C--CC-ChhcHHHHHHHHHc----CCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGIL-D--CG-HDFHTNCIKQWLMQ----KNLCPICKT 673 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~L-p--CG-HvFH~~CI~qWL~~----k~sCPICR~ 673 (678)
.-| ||.... .+ .++.- . |. ..||..|+. |.. +-.||.|++
T Consensus 10 ~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp EET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 345 998864 23 33333 4 66 699999998 443 235999965
No 148
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=25.60 E-value=29 Score=37.55 Aligned_cols=47 Identities=19% Similarity=0.419 Sum_probs=32.3
Q ss_pred CCCCCccccccccccCCCceEEe--CCCChhcHHHHHHHHHc----------CCCCCCCCCC
Q 005771 625 PSDEEPCCICQEEYTDGDNLGIL--DCGHDFHTNCIKQWLMQ----------KNLCPICKTT 674 (678)
Q Consensus 625 ~~e~e~C~ICLEefe~gd~V~~L--pCGHvFH~~CI~qWL~~----------k~sCPICR~~ 674 (678)
+..+..|.||-+. ++.+.+= .|...||..||+.++.. +=.|=+|.-.
T Consensus 90 DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 90 DGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3345679999874 3333444 69999999999999831 2248888643
No 149
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.38 E-value=8.7 Score=30.90 Aligned_cols=38 Identities=16% Similarity=0.446 Sum_probs=27.1
Q ss_pred CCccccccccccCCCc---eEEeC--CCChhcHHHHHHHHHcC
Q 005771 628 EEPCCICQEEYTDGDN---LGILD--CGHDFHTNCIKQWLMQK 665 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~---V~~Lp--CGHvFH~~CI~qWL~~k 665 (678)
...|+-|.-.++..+- +.... |++.||..|...|-...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 3578888888775442 33334 89999999999997644
No 150
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=25.31 E-value=25 Score=31.09 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=22.8
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHH
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLM 663 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~ 663 (678)
.-..|..|...+..++.. .+.=+..||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f-~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRY-LLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEE-EECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcE-EeeCCEEEcHHHhHHHhc
Confidence 445677787777544333 233467788888877665
No 151
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.16 E-value=42 Score=29.57 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=33.7
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGLP 677 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~llp 677 (678)
..|..|...+.+........=+..||..|..+-+..+..|-.|...+.+
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 4688888777531111233456789999998877666689999988764
No 152
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.00 E-value=45 Score=26.22 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=20.6
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHHc
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQ 664 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~ 664 (678)
-..|..|...+... .....=+.+||..|..+.+..
T Consensus 33 CF~C~~C~~~L~~~--~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 33 CFVCSTCRAQLRGQ--HFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TCBCSSSCCBCTTS--CEEESSSCEEEHHHHHHHHHT
T ss_pred CCcccccCCcCCcC--cCEeeCCeEECHHHHHHHHcc
Confidence 35677777776422 123345667777777766653
No 153
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=24.99 E-value=10 Score=34.07 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=16.1
Q ss_pred EEeCCCChhcHHHHHHHHHcCCCCCCCCCCC
Q 005771 645 GILDCGHDFHTNCIKQWLMQKNLCPICKTTG 675 (678)
Q Consensus 645 ~~LpCGHvFH~~CI~qWL~~k~sCPICR~~l 675 (678)
.+..||+.|. .=+.....||.|+.+-
T Consensus 69 ~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 69 QCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred ChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 3456999982 1122345699999753
No 154
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=24.55 E-value=4.1 Score=33.22 Aligned_cols=41 Identities=22% Similarity=0.451 Sum_probs=26.1
Q ss_pred ccccccccCCCceEEe---CCCChhcHHHHHHHH---H-----cCCCCCCCCC
Q 005771 632 CICQEEYTDGDNLGIL---DCGHDFHTNCIKQWL---M-----QKNLCPICKT 673 (678)
Q Consensus 632 ~ICLEefe~gd~V~~L---pCGHvFH~~CI~qWL---~-----~k~sCPICR~ 673 (678)
+||-.....+ .++.- .|...||..|+.--- . .+..||.||.
T Consensus 13 C~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 13 CICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CTTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred eECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 4897665554 34444 388899999983210 0 1456999974
No 155
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=24.22 E-value=7.2 Score=30.07 Aligned_cols=42 Identities=21% Similarity=0.567 Sum_probs=27.5
Q ss_pred cccccccccCCCceEEe-CCCChhcHHHHHHHHH---cCCCCCCCCC
Q 005771 631 CCICQEEYTDGDNLGIL-DCGHDFHTNCIKQWLM---QKNLCPICKT 673 (678)
Q Consensus 631 C~ICLEefe~gd~V~~L-pCGHvFH~~CI~qWL~---~k~sCPICR~ 673 (678)
-.||..... +..++.- .|.-.||..|+.---. .+-.||.|+.
T Consensus 6 ~C~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 6 TCFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp CSTTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEEeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 357887665 3334333 6999999999864222 3456999875
No 156
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.94 E-value=47 Score=26.15 Aligned_cols=38 Identities=21% Similarity=0.486 Sum_probs=19.7
Q ss_pred CccccccccccC--CCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCC
Q 005771 629 EPCCICQEEYTD--GDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTG 675 (678)
Q Consensus 629 e~C~ICLEefe~--gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~l 675 (678)
..|..|-+.+.. .+.+ ...-+..||.+| ..|-.|+..|
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~C--------F~C~~C~~~L 45 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISFEERQWHNDC--------FNCKKCSLSL 45 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EECSSCEECTTT--------CBCSSSCCBC
T ss_pred CCCcCCCccccCCCCcce-EEECCcccCccc--------CEeccCCCcC
Confidence 456666666654 2222 222455666655 2466666554
No 157
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=23.31 E-value=28 Score=33.25 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=15.6
Q ss_pred eEEeCCCChhcHHHHHHHHHcCCCCCCCCCC
Q 005771 644 LGILDCGHDFHTNCIKQWLMQKNLCPICKTT 674 (678)
Q Consensus 644 V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ 674 (678)
.++..|||++-. ..-..||+|..+
T Consensus 139 ~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 139 YICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp EECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 445568888752 233479999864
No 158
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=22.99 E-value=7.1 Score=34.86 Aligned_cols=45 Identities=22% Similarity=0.563 Sum_probs=29.3
Q ss_pred CccccccccccCCCceEEeCCCChhcHHHHHHHHHcCC----CCCCCCC
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKN----LCPICKT 673 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~----sCPICR~ 673 (678)
..|.||...-..++.+..-.|...||..|+.+=|.... .||.|+.
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 36888887644443333336999999999986444322 3888854
No 159
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.93 E-value=61 Score=25.28 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=4.6
Q ss_pred cccccccccc
Q 005771 630 PCCICQEEYT 639 (678)
Q Consensus 630 ~C~ICLEefe 639 (678)
.|..|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (70)
T 2d8z_A 7 GCVQCKKPIT 16 (70)
T ss_dssp BCSSSCCBCC
T ss_pred CCcccCCeec
Confidence 3444444443
No 160
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.56 E-value=52 Score=26.76 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=21.8
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
...|.-|-+.+. ++. ...-+..||.+| ..|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIID-EQP--LIFKNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCC-SCC--CCCSSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCccCCCEec-ceE--EEECcceeCCCC--------CEeCCCCCccC
Confidence 456777777766 222 223456667665 34666766553
No 161
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=21.94 E-value=58 Score=31.24 Aligned_cols=44 Identities=18% Similarity=0.439 Sum_probs=30.5
Q ss_pred CCCCccccccccccCCCceEEe---CCCChhcHHHHHHHHHcC----------CCCCCCCC
Q 005771 626 SDEEPCCICQEEYTDGDNLGIL---DCGHDFHTNCIKQWLMQK----------NLCPICKT 673 (678)
Q Consensus 626 ~e~e~C~ICLEefe~gd~V~~L---pCGHvFH~~CI~qWL~~k----------~sCPICR~ 673 (678)
.-+..|.||-+. .++..- .|-..||..||+.++... =.|=+|.-
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 345679999974 333333 499999999999987631 13877764
No 162
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=21.79 E-value=7.3 Score=31.45 Aligned_cols=41 Identities=29% Similarity=0.700 Sum_probs=25.7
Q ss_pred ccccccccccCCCceEEe-C--CC-ChhcHHHHHHHHHc----CCCCCCCCCC
Q 005771 630 PCCICQEEYTDGDNLGIL-D--CG-HDFHTNCIKQWLMQ----KNLCPICKTT 674 (678)
Q Consensus 630 ~C~ICLEefe~gd~V~~L-p--CG-HvFH~~CI~qWL~~----k~sCPICR~~ 674 (678)
..+||.... .+ .++.- . |. ..||..|+. |.. +-.||.|+..
T Consensus 12 ~yC~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 12 TYCLCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp EETTTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred cEEECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 334998863 34 33333 4 55 899999997 332 3359999653
No 163
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.70 E-value=63 Score=25.64 Aligned_cols=41 Identities=17% Similarity=0.468 Sum_probs=24.8
Q ss_pred CCCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 627 DEEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 627 e~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
....|..|-+.+...+.+.. .-+..||..| ..|-.|++.+.
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~ 50 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQC--------FVCAQCFQQFP 50 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEE-ETTEEECTTT--------CCCTTTCCCCG
T ss_pred CCCCchhcCCccCCCceEEE-eCccEecccc--------CeECCCCCCCC
Confidence 34678888888765443322 2355677766 34777766653
No 164
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.39 E-value=56 Score=27.11 Aligned_cols=27 Identities=33% Similarity=0.637 Sum_probs=13.3
Q ss_pred CccccccccccCCCceEEeCCCChhcHHH
Q 005771 629 EPCCICQEEYTDGDNLGILDCGHDFHTNC 657 (678)
Q Consensus 629 e~C~ICLEefe~gd~V~~LpCGHvFH~~C 657 (678)
..|..|-+.+...+.+ ..-+..||..|
T Consensus 16 ~~C~~C~~~I~~~~~v--~a~~~~~H~~C 42 (91)
T 2d8y_A 16 ETCVECQKTVYPMERL--LANQQVFHISC 42 (91)
T ss_dssp CBCTTTCCBCCTTSEE--ECSSSEEETTT
T ss_pred CcCccCCCccCCceeE--EECCCEECCCC
Confidence 4566666665543322 23444555554
No 165
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.18 E-value=42 Score=26.29 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=5.0
Q ss_pred CChhcHHHHHH
Q 005771 650 GHDFHTNCIKQ 660 (678)
Q Consensus 650 GHvFH~~CI~q 660 (678)
+.+||..|..+
T Consensus 51 g~~yC~~c~~~ 61 (70)
T 2d8x_A 51 GRHLCRPCHNR 61 (70)
T ss_dssp TEEECHHHHHH
T ss_pred CeEECHHHhhh
Confidence 34444444444
No 166
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=20.17 E-value=35 Score=30.53 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=27.7
Q ss_pred CCccccccccccCCCceEEeCCCChhcHHHHHHHHHcCCCCCCCCCCCC
Q 005771 628 EEPCCICQEEYTDGDNLGILDCGHDFHTNCIKQWLMQKNLCPICKTTGL 676 (678)
Q Consensus 628 ~e~C~ICLEefe~gd~V~~LpCGHvFH~~CI~qWL~~k~sCPICR~~ll 676 (678)
...|.-|-+.+.....+ ..-+..||..| ..|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v--~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLL--YAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEE--EETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEE--EeCCcEEcccc--------cCcCcCCCccc
Confidence 46799999988755322 23577888887 45888887763
No 167
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.10 E-value=60 Score=25.38 Aligned_cols=27 Identities=26% Similarity=0.634 Sum_probs=12.0
Q ss_pred ccccccccccCCCceEEeCCCChhcHHH
Q 005771 630 PCCICQEEYTDGDNLGILDCGHDFHTNC 657 (678)
Q Consensus 630 ~C~ICLEefe~gd~V~~LpCGHvFH~~C 657 (678)
.|..|-+.+...+.+ ...-+..||..|
T Consensus 7 ~C~~C~~~I~~~~~~-~~a~~~~~H~~C 33 (72)
T 1wyh_A 7 GCSACGETVMPGSRK-LEYGGQTWHEHC 33 (72)
T ss_dssp BCSSSCCBCCSSSCE-ECSTTCCEETTT
T ss_pred CCccCCCccccCccE-EEECccccCccc
Confidence 455555555532211 122344555544
Done!