Query 005773
Match_columns 678
No_of_seqs 592 out of 3599
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 13:34:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0338 ATP-dependent RNA heli 100.0 3E-102 7E-107 795.0 39.6 460 110-569 163-628 (691)
2 KOG0330 ATP-dependent RNA heli 100.0 5.5E-75 1.2E-79 579.0 31.2 373 123-501 59-431 (476)
3 KOG0331 ATP-dependent RNA heli 100.0 2E-68 4.3E-73 567.5 34.5 360 125-488 91-459 (519)
4 COG0513 SrmB Superfamily II DN 100.0 1.3E-66 2.9E-71 577.3 41.1 366 125-494 29-398 (513)
5 KOG0340 ATP-dependent RNA heli 100.0 6.4E-67 1.4E-71 515.5 33.0 374 123-502 5-386 (442)
6 KOG0342 ATP-dependent RNA heli 100.0 3.5E-66 7.6E-71 530.9 36.7 377 122-504 79-461 (543)
7 KOG0345 ATP-dependent RNA heli 100.0 1.1E-65 2.4E-70 523.3 39.4 367 125-494 4-381 (567)
8 KOG0343 RNA Helicase [RNA proc 100.0 9.6E-66 2.1E-70 531.2 36.0 375 124-503 68-448 (758)
9 KOG0328 Predicted ATP-dependen 100.0 1.9E-64 4.1E-69 483.3 30.0 370 122-497 24-393 (400)
10 KOG0333 U5 snRNP-like RNA heli 100.0 5E-64 1.1E-68 516.4 32.9 365 120-488 240-635 (673)
11 KOG0346 RNA helicase [RNA proc 100.0 6.9E-64 1.5E-68 505.7 32.6 422 125-549 19-487 (569)
12 KOG0347 RNA helicase [RNA proc 100.0 1.2E-63 2.5E-68 515.8 27.7 371 121-495 177-588 (731)
13 PRK04837 ATP-dependent RNA hel 100.0 1E-61 2.2E-66 531.9 40.9 368 123-494 6-379 (423)
14 KOG0348 ATP-dependent RNA heli 100.0 1.1E-62 2.5E-67 507.1 29.3 372 117-488 128-565 (708)
15 PRK11634 ATP-dependent RNA hel 100.0 5.7E-60 1.2E-64 533.6 49.9 370 124-500 5-375 (629)
16 PTZ00110 helicase; Provisional 100.0 2.1E-60 4.5E-65 532.8 42.9 365 120-488 125-495 (545)
17 PRK10590 ATP-dependent RNA hel 100.0 1.8E-60 3.9E-65 525.6 41.6 365 126-494 2-369 (456)
18 PRK04537 ATP-dependent RNA hel 100.0 3E-60 6.5E-65 533.2 42.0 368 125-495 9-382 (572)
19 PRK11776 ATP-dependent RNA hel 100.0 5.9E-60 1.3E-64 523.5 41.6 364 124-495 3-367 (460)
20 KOG0326 ATP-dependent RNA heli 100.0 4.7E-62 1E-66 473.9 21.4 370 118-495 78-447 (459)
21 PRK11192 ATP-dependent RNA hel 100.0 6E-59 1.3E-63 512.2 42.8 365 126-493 2-368 (434)
22 PLN00206 DEAD-box ATP-dependen 100.0 5.1E-59 1.1E-63 520.2 41.6 365 120-489 116-487 (518)
23 KOG0336 ATP-dependent RNA heli 100.0 1.2E-59 2.6E-64 470.1 29.3 362 121-487 215-582 (629)
24 KOG0335 ATP-dependent RNA heli 100.0 4.7E-59 1E-63 487.3 27.9 363 121-487 70-454 (482)
25 PRK01297 ATP-dependent RNA hel 100.0 4.1E-57 9E-62 502.1 43.4 369 124-496 86-461 (475)
26 KOG0341 DEAD-box protein abstr 100.0 1.5E-59 3.2E-64 466.5 15.5 362 112-478 157-529 (610)
27 KOG0339 ATP-dependent RNA heli 100.0 1.5E-57 3.2E-62 466.0 30.4 364 121-487 219-585 (731)
28 KOG0350 DEAD-box ATP-dependent 100.0 2.1E-56 4.5E-61 458.1 32.9 367 121-492 123-555 (620)
29 PTZ00424 helicase 45; Provisio 100.0 4.9E-55 1.1E-59 477.2 41.1 366 124-495 27-392 (401)
30 KOG0332 ATP-dependent RNA heli 100.0 3.3E-55 7.2E-60 434.8 27.9 373 117-497 82-464 (477)
31 KOG0337 ATP-dependent RNA heli 100.0 1.3E-55 2.8E-60 443.8 22.9 365 124-494 20-385 (529)
32 KOG0334 RNA helicase [RNA proc 100.0 8.8E-54 1.9E-58 476.1 31.0 377 119-499 359-740 (997)
33 KOG0327 Translation initiation 100.0 5.9E-54 1.3E-58 430.5 24.0 364 124-496 25-389 (397)
34 KOG4284 DEAD box protein [Tran 100.0 1.3E-51 2.7E-56 432.5 27.1 354 121-479 21-381 (980)
35 TIGR03817 DECH_helic helicase/ 100.0 3.3E-50 7.1E-55 462.8 39.4 357 131-499 20-410 (742)
36 PLN03137 ATP-dependent DNA hel 100.0 4.2E-49 9.2E-54 449.6 38.2 344 126-487 436-797 (1195)
37 KOG0344 ATP-dependent RNA heli 100.0 1.7E-49 3.7E-54 417.4 26.9 367 121-489 128-507 (593)
38 TIGR00614 recQ_fam ATP-depende 100.0 2.1E-48 4.5E-53 430.9 35.1 326 141-487 5-343 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 1.8E-46 3.9E-51 426.0 36.5 330 135-487 12-353 (607)
40 TIGR01389 recQ ATP-dependent D 100.0 9.5E-46 2E-50 421.3 36.4 324 142-488 8-342 (591)
41 KOG0329 ATP-dependent RNA heli 100.0 1.2E-46 2.5E-51 356.0 17.6 332 121-494 38-373 (387)
42 PRK13767 ATP-dependent helicas 100.0 1.2E-43 2.7E-48 416.2 37.0 340 132-475 18-396 (876)
43 PRK02362 ski2-like helicase; P 100.0 5.1E-44 1.1E-48 415.9 31.7 334 126-478 2-398 (737)
44 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.2E-42 2.6E-47 392.3 35.2 316 143-476 12-390 (844)
45 PRK00254 ski2-like helicase; P 100.0 1.7E-42 3.6E-47 402.2 35.3 335 126-478 2-389 (720)
46 COG0514 RecQ Superfamily II DN 100.0 8.9E-43 1.9E-47 378.2 29.7 327 142-489 12-349 (590)
47 TIGR00580 mfd transcription-re 100.0 4.8E-42 1E-46 398.5 35.6 333 131-488 435-787 (926)
48 PRK10689 transcription-repair 100.0 5.1E-41 1.1E-45 397.9 38.3 330 134-488 588-936 (1147)
49 COG1201 Lhr Lhr-like helicases 100.0 1.3E-40 2.9E-45 373.7 33.4 338 131-476 7-361 (814)
50 PRK09401 reverse gyrase; Revie 100.0 1.5E-40 3.3E-45 394.6 35.3 283 143-449 77-410 (1176)
51 PRK10917 ATP-dependent DNA hel 100.0 5.8E-40 1.3E-44 376.6 37.2 316 136-475 251-587 (681)
52 PRK01172 ski2-like helicase; P 100.0 5.4E-40 1.2E-44 379.6 33.6 339 126-484 2-386 (674)
53 PRK09751 putative ATP-dependen 100.0 9.9E-40 2.2E-44 388.2 35.6 303 167-472 1-380 (1490)
54 TIGR00643 recG ATP-dependent D 100.0 2E-39 4.4E-44 369.9 36.0 318 134-475 223-564 (630)
55 PHA02653 RNA helicase NPH-II; 100.0 9.1E-40 2E-44 367.5 32.4 315 149-480 166-517 (675)
56 TIGR01970 DEAH_box_HrpB ATP-de 100.0 9.9E-39 2.1E-43 367.3 32.7 308 151-480 6-339 (819)
57 TIGR01054 rgy reverse gyrase. 100.0 6.6E-38 1.4E-42 372.7 35.1 292 135-449 66-409 (1171)
58 PRK14701 reverse gyrase; Provi 100.0 2.4E-38 5.1E-43 383.1 31.0 330 135-486 67-465 (1638)
59 KOG0352 ATP-dependent DNA heli 100.0 2.4E-38 5.3E-43 319.0 25.8 335 134-488 5-373 (641)
60 KOG0349 Putative DEAD-box RNA 100.0 1.9E-39 4.1E-44 327.0 16.3 289 195-484 285-622 (725)
61 PRK11664 ATP-dependent RNA hel 100.0 4.4E-38 9.6E-43 362.9 29.8 307 151-479 9-341 (812)
62 PRK12898 secA preprotein trans 100.0 2.4E-36 5.1E-41 334.6 36.6 321 143-481 100-590 (656)
63 COG1111 MPH1 ERCC4-like helica 100.0 2.3E-36 4.9E-41 313.9 32.8 326 146-481 14-485 (542)
64 PRK09200 preprotein translocas 100.0 9.8E-36 2.1E-40 336.4 37.1 321 143-481 75-545 (790)
65 KOG0351 ATP-dependent DNA heli 100.0 4.6E-36 9.9E-41 343.8 28.2 337 134-488 251-603 (941)
66 TIGR00963 secA preprotein tran 100.0 1.4E-34 3E-39 321.9 37.6 321 143-482 53-522 (745)
67 TIGR01587 cas3_core CRISPR-ass 100.0 9.9E-36 2.1E-40 320.0 27.7 302 164-478 1-337 (358)
68 TIGR03714 secA2 accessory Sec 100.0 1.2E-34 2.6E-39 324.5 36.6 321 143-481 67-541 (762)
69 PHA02558 uvsW UvsW helicase; P 100.0 1.7E-35 3.7E-40 329.5 29.7 303 145-468 112-443 (501)
70 COG1202 Superfamily II helicas 100.0 4.6E-35 1E-39 305.2 26.8 338 125-477 194-553 (830)
71 PRK13766 Hef nuclease; Provisi 100.0 5.9E-34 1.3E-38 335.3 36.1 325 146-479 14-481 (773)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 2E-33 4.3E-38 299.7 30.3 293 151-462 1-357 (357)
73 KOG0354 DEAD-box like helicase 100.0 1.8E-33 3.8E-38 308.8 29.1 331 146-485 61-537 (746)
74 PRK11131 ATP-dependent RNA hel 100.0 7.9E-33 1.7E-37 324.0 30.9 303 151-479 78-413 (1294)
75 COG1204 Superfamily II helicas 100.0 4.9E-33 1.1E-37 317.1 27.9 334 131-475 15-406 (766)
76 COG1205 Distinct helicase fami 100.0 2.1E-32 4.5E-37 316.3 32.3 339 132-476 55-421 (851)
77 COG0556 UvrB Helicase subunit 100.0 3.3E-33 7.2E-38 290.3 22.4 210 301-519 385-599 (663)
78 KOG0353 ATP-dependent DNA heli 100.0 3E-32 6.5E-37 271.0 23.2 340 130-486 76-476 (695)
79 TIGR00603 rad25 DNA repair hel 100.0 1.8E-31 4E-36 299.0 29.5 310 147-483 255-613 (732)
80 PRK04914 ATP-dependent helicas 100.0 8.9E-31 1.9E-35 303.2 35.9 334 147-489 152-615 (956)
81 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.1E-30 2.4E-35 307.3 30.6 312 144-479 61-406 (1283)
82 PRK05580 primosome assembly pr 100.0 1.2E-29 2.7E-34 290.2 33.2 319 147-485 144-557 (679)
83 KOG0952 DNA/RNA helicase MER3/ 100.0 8.8E-30 1.9E-34 282.0 26.7 336 141-482 104-496 (1230)
84 PRK13104 secA preprotein trans 100.0 2E-28 4.4E-33 276.2 37.2 320 143-481 79-591 (896)
85 KOG0926 DEAH-box RNA helicase 100.0 1.6E-29 3.5E-34 271.8 23.4 331 132-476 244-703 (1172)
86 cd00268 DEADc DEAD-box helicas 100.0 3.7E-29 8.1E-34 246.9 24.0 202 127-330 1-202 (203)
87 PRK12899 secA preprotein trans 100.0 7.3E-28 1.6E-32 270.9 36.1 148 128-284 65-228 (970)
88 KOG0385 Chromatin remodeling c 100.0 1.3E-28 2.8E-33 264.8 26.3 316 147-480 167-602 (971)
89 KOG0947 Cytoplasmic exosomal R 100.0 1.6E-27 3.5E-32 261.2 33.2 327 140-486 291-734 (1248)
90 PRK12904 preprotein translocas 100.0 2.9E-27 6.4E-32 266.8 36.4 319 143-481 78-577 (830)
91 PLN03142 Probable chromatin-re 100.0 8.4E-28 1.8E-32 279.3 32.3 329 147-488 169-612 (1033)
92 PRK12906 secA preprotein trans 100.0 4E-27 8.6E-32 264.7 36.2 320 143-481 77-557 (796)
93 PRK09694 helicase Cas3; Provis 100.0 1.5E-27 3.3E-32 274.9 32.0 314 145-466 284-664 (878)
94 TIGR00595 priA primosomal prot 100.0 1.2E-27 2.5E-32 264.7 26.1 300 166-485 1-389 (505)
95 COG1200 RecG RecG-like helicas 100.0 1.6E-26 3.4E-31 250.7 31.9 323 131-478 246-592 (677)
96 COG1061 SSL2 DNA or RNA helica 100.0 1.8E-27 3.8E-32 260.2 24.6 299 147-469 36-382 (442)
97 PRK13107 preprotein translocas 99.9 2.1E-25 4.6E-30 251.0 34.2 321 143-481 79-595 (908)
98 COG1197 Mfd Transcription-repa 99.9 1.2E-25 2.7E-30 256.3 31.3 326 137-487 585-929 (1139)
99 TIGR00631 uvrb excinuclease AB 99.9 4.2E-26 9.2E-31 258.0 26.7 149 368-517 440-593 (655)
100 COG4581 Superfamily II RNA hel 99.9 2.2E-25 4.9E-30 254.3 31.8 319 140-476 113-536 (1041)
101 KOG2340 Uncharacterized conser 99.9 1.2E-26 2.5E-31 240.6 19.1 343 144-486 213-677 (698)
102 KOG0387 Transcription-coupled 99.9 2.1E-25 4.6E-30 241.4 29.2 337 130-487 196-671 (923)
103 COG1643 HrpA HrpA-like helicas 99.9 3.5E-26 7.6E-31 259.6 24.4 310 149-478 52-388 (845)
104 KOG0922 DEAH-box RNA helicase 99.9 1.7E-25 3.6E-30 240.2 23.0 308 149-479 53-392 (674)
105 KOG0948 Nuclear exosomal RNA h 99.9 7.8E-26 1.7E-30 242.4 20.4 319 147-486 129-549 (1041)
106 KOG0951 RNA helicase BRR2, DEA 99.9 3.3E-25 7.2E-30 248.5 25.1 347 132-484 296-709 (1674)
107 PF06862 DUF1253: Protein of u 99.9 1.9E-24 4.1E-29 229.3 28.4 299 189-487 30-425 (442)
108 PRK05298 excinuclease ABC subu 99.9 4.4E-24 9.6E-29 243.5 32.0 182 369-553 445-638 (652)
109 KOG0384 Chromodomain-helicase 99.9 1.5E-25 3.2E-30 252.1 19.0 329 146-488 369-824 (1373)
110 COG4098 comFA Superfamily II D 99.9 9.5E-24 2.1E-28 209.2 28.9 313 147-486 97-425 (441)
111 PRK11448 hsdR type I restricti 99.9 2.7E-24 5.9E-29 254.9 29.3 305 147-465 413-801 (1123)
112 KOG0923 mRNA splicing factor A 99.9 9.3E-25 2E-29 231.6 19.9 309 147-477 265-606 (902)
113 PF00270 DEAD: DEAD/DEAH box h 99.9 1.3E-24 2.7E-29 207.8 18.4 165 149-318 1-168 (169)
114 KOG0950 DNA polymerase theta/e 99.9 1E-23 2.3E-28 233.4 19.8 340 131-487 207-621 (1008)
115 COG1110 Reverse gyrase [DNA re 99.9 2.3E-22 5E-27 223.7 29.4 279 144-448 80-416 (1187)
116 KOG0924 mRNA splicing factor A 99.9 2.7E-23 5.9E-28 220.8 18.4 309 147-477 356-697 (1042)
117 KOG0920 ATP-dependent RNA heli 99.9 4.5E-22 9.8E-27 225.2 24.6 317 147-478 173-545 (924)
118 PRK12900 secA preprotein trans 99.9 4.1E-21 8.8E-26 217.3 31.9 124 356-481 582-715 (1025)
119 KOG0392 SNF2 family DNA-depend 99.9 3.2E-22 6.8E-27 224.5 21.9 323 148-479 976-1456(1549)
120 KOG0389 SNF2 family DNA-depend 99.9 2.4E-21 5.3E-26 209.9 23.2 323 148-480 400-891 (941)
121 KOG0386 Chromatin remodeling c 99.9 1.3E-22 2.9E-27 224.5 13.8 341 145-501 392-862 (1157)
122 COG1203 CRISPR-associated heli 99.9 2.3E-21 5E-26 224.4 24.6 328 148-482 196-555 (733)
123 TIGR01407 dinG_rel DnaQ family 99.9 1.2E-19 2.6E-24 214.3 32.4 332 132-476 231-813 (850)
124 PRK12326 preprotein translocas 99.9 8E-19 1.7E-23 193.8 34.8 320 143-481 75-551 (764)
125 KOG0390 DNA repair protein, SN 99.8 2.1E-19 4.5E-24 200.5 26.2 324 147-478 238-708 (776)
126 COG1198 PriA Primosomal protei 99.8 5.4E-19 1.2E-23 198.5 28.8 322 147-487 198-613 (730)
127 KOG0925 mRNA splicing factor A 99.8 1.7E-19 3.7E-24 185.9 22.5 327 124-477 24-387 (699)
128 PRK13103 secA preprotein trans 99.8 6.1E-18 1.3E-22 191.2 30.8 320 143-481 79-595 (913)
129 PRK12903 secA preprotein trans 99.8 1.6E-17 3.5E-22 185.8 33.1 319 143-481 75-543 (925)
130 KOG0391 SNF2 family DNA-depend 99.8 3.9E-18 8.5E-23 189.9 26.7 112 367-478 1273-1388(1958)
131 smart00487 DEXDc DEAD-like hel 99.8 1.4E-18 3E-23 169.5 20.9 187 142-333 3-191 (201)
132 TIGR00348 hsdR type I site-spe 99.8 5.4E-18 1.2E-22 194.4 28.2 301 148-464 239-634 (667)
133 KOG0388 SNF2 family DNA-depend 99.8 8.6E-19 1.9E-23 187.2 18.4 113 367-479 1041-1156(1185)
134 KOG0949 Predicted helicase, DE 99.8 3.9E-18 8.4E-23 188.3 18.6 161 147-315 511-674 (1330)
135 KOG1123 RNA polymerase II tran 99.8 5.5E-18 1.2E-22 175.3 18.4 314 146-484 301-660 (776)
136 CHL00122 secA preprotein trans 99.8 2.7E-16 5.9E-21 177.2 31.8 131 143-284 73-209 (870)
137 COG4096 HsdR Type I site-speci 99.8 1.5E-17 3.3E-22 183.3 20.9 298 146-464 164-525 (875)
138 PRK07246 bifunctional ATP-depe 99.8 1.2E-16 2.7E-21 186.4 29.7 325 142-488 241-796 (820)
139 KOG1000 Chromatin remodeling p 99.8 1.1E-16 2.5E-21 165.6 25.7 326 146-488 197-616 (689)
140 cd00079 HELICc Helicase superf 99.7 7E-17 1.5E-21 147.0 12.2 117 357-473 13-131 (131)
141 PRK12902 secA preprotein trans 99.7 1.6E-14 3.5E-19 162.7 33.2 131 143-284 82-218 (939)
142 PF00271 Helicase_C: Helicase 99.7 3.6E-17 7.7E-22 135.0 8.7 78 388-465 1-78 (78)
143 KOG1002 Nucleotide excision re 99.7 4.2E-15 9.1E-20 153.8 24.2 112 367-478 635-750 (791)
144 KOG4150 Predicted ATP-dependen 99.7 5.3E-16 1.2E-20 162.6 17.8 346 137-490 276-655 (1034)
145 KOG0953 Mitochondrial RNA heli 99.7 4.6E-16 9.9E-21 163.5 15.3 279 163-487 192-486 (700)
146 PRK08074 bifunctional ATP-depe 99.7 2.4E-14 5.2E-19 170.2 29.3 121 368-488 750-906 (928)
147 cd00046 DEXDc DEAD-like helica 99.7 2.8E-15 6.1E-20 137.4 15.8 144 163-312 1-144 (144)
148 TIGR03117 cas_csf4 CRISPR-asso 99.6 1.1E-13 2.4E-18 154.9 30.5 80 368-449 468-561 (636)
149 COG4889 Predicted helicase [Ge 99.6 3.7E-15 8.1E-20 163.0 11.2 318 144-473 158-584 (1518)
150 PRK12901 secA preprotein trans 99.6 1E-12 2.2E-17 149.7 31.0 111 368-481 626-745 (1112)
151 KOG4439 RNA polymerase II tran 99.6 6.7E-14 1.4E-18 150.8 17.5 111 368-478 744-859 (901)
152 COG0553 HepA Superfamily II DN 99.6 2.1E-13 4.6E-18 163.9 24.2 107 372-478 713-823 (866)
153 KOG1015 Transcription regulato 99.6 8.7E-14 1.9E-18 153.3 18.4 111 368-478 1140-1278(1567)
154 PF04851 ResIII: Type III rest 99.6 1.6E-14 3.4E-19 139.6 11.2 153 147-313 3-183 (184)
155 COG1199 DinG Rad3-related DNA 99.5 1.4E-12 3.1E-17 151.3 26.9 104 367-473 476-614 (654)
156 smart00490 HELICc helicase sup 99.5 2.2E-14 4.8E-19 118.9 8.5 81 385-465 2-82 (82)
157 KOG0951 RNA helicase BRR2, DEA 99.5 3.1E-13 6.8E-18 153.4 19.9 315 145-485 1141-1502(1674)
158 PRK11747 dinG ATP-dependent DN 99.5 1.5E-11 3.2E-16 142.1 32.1 78 369-449 533-616 (697)
159 TIGR00604 rad3 DNA repair heli 99.5 3.5E-12 7.5E-17 148.4 26.7 74 143-219 6-83 (705)
160 PRK14873 primosome assembly pr 99.5 8.8E-12 1.9E-16 141.6 24.2 138 168-321 166-312 (665)
161 TIGR02562 cas3_yersinia CRISPR 99.5 6.4E-12 1.4E-16 144.0 22.6 311 148-466 409-881 (1110)
162 PF02399 Herpes_ori_bp: Origin 99.4 3.9E-11 8.4E-16 134.5 20.6 288 164-476 51-387 (824)
163 PF00176 SNF2_N: SNF2 family N 99.3 1.4E-11 3E-16 128.9 11.2 156 151-314 1-174 (299)
164 COG0653 SecA Preprotein transl 99.3 9.9E-11 2.1E-15 132.1 17.9 314 148-479 81-547 (822)
165 KOG1016 Predicted DNA helicase 99.1 3.6E-09 7.8E-14 115.3 21.2 119 369-487 718-857 (1387)
166 PF07652 Flavi_DEAD: Flaviviru 99.1 3.7E-10 8E-15 101.4 10.9 135 162-316 4-140 (148)
167 KOG0921 Dosage compensation co 99.1 4.8E-10 1E-14 124.1 10.9 312 155-477 386-774 (1282)
168 COG0610 Type I site-specific r 99.1 4.9E-08 1.1E-12 116.1 28.6 298 163-475 274-651 (962)
169 smart00489 DEXDc3 DEAD-like he 99.1 1.6E-09 3.5E-14 112.2 13.5 76 143-219 5-84 (289)
170 smart00488 DEXDc2 DEAD-like he 99.1 1.6E-09 3.5E-14 112.2 13.5 76 143-219 5-84 (289)
171 PF07517 SecA_DEAD: SecA DEAD- 98.8 6.3E-08 1.4E-12 97.9 14.5 131 143-284 74-210 (266)
172 KOG1001 Helicase-like transcri 98.5 4.5E-07 9.9E-12 102.9 10.0 102 371-472 540-643 (674)
173 TIGR00596 rad1 DNA repair prot 98.4 1.1E-05 2.4E-10 93.7 18.3 69 245-314 6-74 (814)
174 KOG1132 Helicase of the DEAD s 98.3 7.4E-05 1.6E-09 84.4 22.2 82 367-449 558-656 (945)
175 PF13086 AAA_11: AAA domain; P 98.3 2.9E-06 6.2E-11 85.1 10.1 71 147-218 1-75 (236)
176 KOG0952 DNA/RNA helicase MER3/ 98.3 4.2E-07 9.2E-12 103.3 3.8 132 147-285 927-1060(1230)
177 KOG0383 Predicted helicase [Ge 98.3 9.9E-08 2.1E-12 106.9 -1.2 65 368-433 629-696 (696)
178 PRK15483 type III restriction- 98.3 6.5E-06 1.4E-10 95.8 13.0 70 420-489 501-580 (986)
179 COG3587 Restriction endonuclea 98.3 3.9E-05 8.5E-10 86.2 18.1 71 419-489 482-565 (985)
180 PF13307 Helicase_C_2: Helicas 98.2 3.9E-06 8.4E-11 79.8 8.4 106 369-476 8-149 (167)
181 KOG1802 RNA helicase nonsense 98.0 9.4E-05 2E-09 80.8 14.6 85 138-231 401-485 (935)
182 PF13604 AAA_30: AAA domain; P 98.0 2.6E-05 5.6E-10 76.2 9.2 124 147-311 1-130 (196)
183 KOG1131 RNA polymerase II tran 97.9 0.0041 9E-08 66.6 24.0 107 369-476 529-679 (755)
184 PF13872 AAA_34: P-loop contai 97.9 0.00014 3E-09 74.1 12.1 171 130-317 26-225 (303)
185 KOG1803 DNA helicase [Replicat 97.8 3.7E-05 8E-10 83.7 7.7 64 147-216 185-249 (649)
186 TIGR01447 recD exodeoxyribonuc 97.8 0.00015 3.3E-09 82.2 12.5 144 149-311 147-295 (586)
187 PF13245 AAA_19: Part of AAA d 97.8 5.4E-05 1.2E-09 61.6 6.1 60 155-216 2-62 (76)
188 PF12340 DUF3638: Protein of u 97.8 0.00022 4.8E-09 70.1 11.1 152 126-285 4-186 (229)
189 PF02562 PhoH: PhoH-like prote 97.7 8.8E-05 1.9E-09 72.2 7.6 146 146-311 3-155 (205)
190 PRK10875 recD exonuclease V su 97.7 0.00022 4.8E-09 81.1 11.5 143 149-311 154-301 (615)
191 PF09848 DUF2075: Uncharacteri 97.7 7.8E-05 1.7E-09 79.9 7.5 108 164-298 3-117 (352)
192 PRK10536 hypothetical protein; 97.6 0.00077 1.7E-08 67.6 12.8 143 144-309 56-210 (262)
193 TIGR00376 DNA helicase, putati 97.6 0.00046 1E-08 79.3 12.4 67 146-218 156-223 (637)
194 TIGR01448 recD_rel helicase, p 97.6 0.00064 1.4E-08 79.4 13.3 133 143-311 320-452 (720)
195 PF00580 UvrD-helicase: UvrD/R 97.2 0.00056 1.2E-08 71.8 6.6 124 148-281 1-125 (315)
196 PF13401 AAA_22: AAA domain; P 97.2 0.0007 1.5E-08 61.2 6.3 17 162-178 4-20 (131)
197 smart00492 HELICc3 helicase su 97.1 0.0029 6.3E-08 58.1 9.6 67 383-449 4-79 (141)
198 PRK08181 transposase; Validate 97.1 0.0077 1.7E-07 61.6 13.4 111 158-316 102-213 (269)
199 PF13871 Helicase_C_4: Helicas 97.0 0.0026 5.7E-08 64.6 8.6 80 410-489 51-142 (278)
200 PRK12723 flagellar biosynthesi 97.0 0.0081 1.7E-07 64.6 12.6 131 163-323 175-309 (388)
201 PRK06526 transposase; Provisio 97.0 0.0078 1.7E-07 61.2 11.8 46 271-316 159-205 (254)
202 smart00491 HELICc2 helicase su 96.9 0.0041 8.8E-08 57.3 8.6 67 383-449 4-80 (142)
203 TIGR02768 TraA_Ti Ti-type conj 96.9 0.011 2.5E-07 69.3 13.8 74 132-212 338-412 (744)
204 PRK13889 conjugal transfer rel 96.8 0.012 2.6E-07 70.4 13.5 63 143-212 343-406 (988)
205 PRK04296 thymidine kinase; Pro 96.8 0.0038 8.3E-08 60.6 7.5 109 164-312 4-115 (190)
206 PRK06921 hypothetical protein; 96.7 0.013 2.9E-07 60.0 11.2 45 161-211 116-160 (266)
207 cd00009 AAA The AAA+ (ATPases 96.6 0.018 3.9E-07 52.3 10.8 25 162-187 19-43 (151)
208 KOG0298 DEAD box-containing he 96.6 0.0037 8E-08 73.6 7.2 153 162-319 374-557 (1394)
209 PRK14974 cell division protein 96.6 0.032 6.9E-07 59.0 13.6 53 271-323 222-275 (336)
210 KOG1805 DNA replication helica 96.6 0.0093 2E-07 68.6 9.9 136 131-285 657-810 (1100)
211 PF14617 CMS1: U3-containing 9 96.6 0.0072 1.6E-07 60.7 8.1 89 192-282 122-212 (252)
212 PRK14722 flhF flagellar biosyn 96.5 0.013 2.7E-07 62.7 9.9 131 162-323 137-269 (374)
213 PRK13826 Dtr system oriT relax 96.5 0.028 6.1E-07 67.7 13.7 138 131-311 366-505 (1102)
214 smart00382 AAA ATPases associa 96.5 0.0055 1.2E-07 55.2 6.2 42 162-209 2-43 (148)
215 PRK05703 flhF flagellar biosyn 96.5 0.037 8.1E-07 60.6 13.4 128 162-323 221-354 (424)
216 COG1419 FlhF Flagellar GTP-bin 96.4 0.056 1.2E-06 57.5 13.9 134 161-325 202-337 (407)
217 PF00448 SRP54: SRP54-type pro 96.4 0.041 8.9E-07 53.6 11.8 129 165-321 4-134 (196)
218 PRK07952 DNA replication prote 96.3 0.039 8.5E-07 55.6 11.7 109 163-317 100-210 (244)
219 PRK08116 hypothetical protein; 96.3 0.047 1E-06 56.1 12.3 108 164-317 116-226 (268)
220 PRK08727 hypothetical protein; 96.2 0.022 4.7E-07 57.3 9.2 43 271-313 93-136 (233)
221 KOG1133 Helicase of the DEAD s 96.2 0.092 2E-06 58.7 14.3 107 367-476 626-779 (821)
222 PRK06835 DNA replication prote 96.2 0.05 1.1E-06 57.4 11.9 44 162-212 183-226 (329)
223 COG1875 NYN ribonuclease and A 96.2 0.015 3.3E-07 60.3 7.5 64 142-208 223-288 (436)
224 PRK11889 flhF flagellar biosyn 96.1 0.042 9.2E-07 58.6 11.1 128 163-323 242-374 (436)
225 PF05970 PIF1: PIF1-like helic 96.1 0.022 4.7E-07 61.4 9.2 59 148-212 2-66 (364)
226 PRK12377 putative replication 96.1 0.045 9.8E-07 55.3 10.5 106 162-315 101-209 (248)
227 COG2805 PilT Tfp pilus assembl 96.0 0.013 2.8E-07 59.4 5.9 51 122-191 103-153 (353)
228 PHA02533 17 large terminase pr 95.9 0.059 1.3E-06 60.7 11.6 148 147-312 59-210 (534)
229 PRK11054 helD DNA helicase IV; 95.9 0.023 5E-07 65.9 8.5 71 145-219 194-264 (684)
230 PRK10919 ATP-dependent DNA hel 95.9 0.013 2.7E-07 68.4 6.4 71 147-221 2-72 (672)
231 PF05127 Helicase_RecD: Helica 95.9 0.0083 1.8E-07 57.0 4.0 125 166-314 1-125 (177)
232 TIGR03420 DnaA_homol_Hda DnaA 95.8 0.036 7.9E-07 55.2 8.6 41 273-313 92-133 (226)
233 cd01120 RecA-like_NTPases RecA 95.8 0.095 2E-06 48.7 10.9 44 270-313 84-137 (165)
234 PRK06893 DNA replication initi 95.8 0.032 7E-07 55.9 7.9 45 271-315 91-137 (229)
235 PRK05642 DNA replication initi 95.7 0.045 9.7E-07 55.1 8.8 44 271-314 97-141 (234)
236 COG1484 DnaC DNA replication p 95.7 0.043 9.3E-07 55.8 8.6 50 161-217 104-153 (254)
237 COG1444 Predicted P-loop ATPas 95.7 0.087 1.9E-06 60.6 11.6 144 145-313 212-357 (758)
238 KOG0989 Replication factor C, 95.6 0.033 7.1E-07 56.6 7.0 46 267-313 125-170 (346)
239 TIGR01075 uvrD DNA helicase II 95.4 0.022 4.8E-07 67.1 6.3 72 146-221 3-74 (715)
240 COG3973 Superfamily I DNA and 95.4 0.05 1.1E-06 60.0 8.2 86 134-220 192-284 (747)
241 PRK08084 DNA replication initi 95.3 0.06 1.3E-06 54.2 8.2 43 272-314 98-142 (235)
242 TIGR01074 rep ATP-dependent DN 95.3 0.031 6.8E-07 65.4 6.8 70 148-221 2-71 (664)
243 PF13177 DNA_pol3_delta2: DNA 95.2 0.25 5.5E-06 46.5 11.5 43 270-313 101-143 (162)
244 PRK11773 uvrD DNA-dependent he 95.2 0.035 7.5E-07 65.5 6.7 72 146-221 8-79 (721)
245 PF03354 Terminase_1: Phage Te 95.2 0.076 1.7E-06 59.4 9.1 150 150-309 1-160 (477)
246 PRK14087 dnaA chromosomal repl 95.1 0.11 2.3E-06 57.5 10.0 108 163-314 142-250 (450)
247 PRK00771 signal recognition pa 95.1 0.2 4.3E-06 55.0 11.9 50 273-322 177-227 (437)
248 COG4962 CpaF Flp pilus assembl 95.1 0.038 8.2E-07 57.4 5.7 60 143-209 153-213 (355)
249 PRK00149 dnaA chromosomal repl 95.0 0.096 2.1E-06 58.2 9.3 45 163-212 149-193 (450)
250 PTZ00293 thymidine kinase; Pro 95.0 0.093 2E-06 51.3 8.0 39 162-206 4-42 (211)
251 PRK14712 conjugal transfer nic 95.0 0.11 2.4E-06 64.8 10.4 64 147-212 835-900 (1623)
252 PRK13894 conjugal transfer ATP 95.0 0.11 2.4E-06 54.6 9.1 66 137-208 124-190 (319)
253 PRK12323 DNA polymerase III su 94.9 0.085 1.8E-06 59.8 8.4 41 269-310 122-162 (700)
254 TIGR00362 DnaA chromosomal rep 94.9 0.12 2.6E-06 56.6 9.5 43 163-210 137-179 (405)
255 PRK13709 conjugal transfer nic 94.9 0.14 3.1E-06 64.7 11.0 64 147-212 967-1032(1747)
256 PRK07764 DNA polymerase III su 94.8 0.25 5.4E-06 58.5 12.5 40 269-309 118-157 (824)
257 PRK07003 DNA polymerase III su 94.8 0.24 5.2E-06 57.2 11.7 39 270-309 118-156 (830)
258 TIGR02760 TraI_TIGR conjugativ 94.7 0.23 5.1E-06 64.3 12.8 135 147-311 429-566 (1960)
259 PRK09183 transposase/IS protei 94.7 0.3 6.4E-06 49.9 11.3 20 159-178 99-118 (259)
260 PRK12422 chromosomal replicati 94.7 0.14 3.1E-06 56.4 9.5 47 271-317 202-250 (445)
261 PHA02544 44 clamp loader, smal 94.7 0.25 5.4E-06 52.0 11.1 39 271-309 100-138 (316)
262 PRK09112 DNA polymerase III su 94.7 0.19 4.1E-06 53.7 10.1 40 269-309 139-178 (351)
263 PF00004 AAA: ATPase family as 94.7 0.043 9.3E-07 49.2 4.5 14 165-178 1-14 (132)
264 PHA03333 putative ATPase subun 94.6 0.48 1E-05 53.9 13.2 153 144-313 166-333 (752)
265 PRK12727 flagellar biosynthesi 94.6 0.61 1.3E-05 51.9 13.9 63 254-322 416-480 (559)
266 PRK13833 conjugal transfer pro 94.6 0.093 2E-06 55.1 7.2 57 148-208 129-186 (323)
267 PRK06731 flhF flagellar biosyn 94.5 0.47 1E-05 48.6 12.1 130 161-323 74-208 (270)
268 PRK14088 dnaA chromosomal repl 94.5 0.2 4.4E-06 55.3 10.2 38 163-204 131-168 (440)
269 TIGR02782 TrbB_P P-type conjug 94.5 0.39 8.4E-06 50.1 11.7 66 137-208 108-174 (299)
270 PRK08769 DNA polymerase III su 94.4 0.23 5E-06 52.1 9.9 144 145-311 2-152 (319)
271 PTZ00112 origin recognition co 94.4 0.17 3.6E-06 58.9 9.3 24 164-188 782-806 (1164)
272 PRK05986 cob(I)alamin adenolsy 94.4 0.067 1.5E-06 51.4 5.3 146 161-322 21-168 (191)
273 cd01124 KaiC KaiC is a circadi 94.4 0.24 5.3E-06 47.5 9.5 48 165-219 2-49 (187)
274 PRK14086 dnaA chromosomal repl 94.4 0.16 3.4E-06 57.6 9.0 46 271-316 377-424 (617)
275 COG1474 CDC6 Cdc6-related prot 94.4 0.25 5.5E-06 53.0 10.2 34 156-190 34-69 (366)
276 PRK08903 DnaA regulatory inact 94.3 0.18 3.8E-06 50.4 8.5 42 272-314 91-133 (227)
277 TIGR01547 phage_term_2 phage t 94.3 0.15 3.3E-06 55.5 8.6 136 164-315 3-143 (396)
278 PRK12726 flagellar biosynthesi 94.2 0.26 5.6E-06 52.6 9.7 17 162-178 206-222 (407)
279 PRK09111 DNA polymerase III su 94.2 0.25 5.4E-06 56.5 10.2 40 269-309 130-169 (598)
280 PRK12402 replication factor C 94.2 0.25 5.4E-06 52.4 9.8 38 270-308 124-161 (337)
281 COG3972 Superfamily I DNA and 94.2 0.11 2.4E-06 56.0 6.7 80 135-220 151-230 (660)
282 PRK14721 flhF flagellar biosyn 94.2 0.43 9.3E-06 52.0 11.5 131 162-323 191-323 (420)
283 PRK11331 5-methylcytosine-spec 94.1 0.18 3.9E-06 54.9 8.5 32 148-179 180-211 (459)
284 TIGR01073 pcrA ATP-dependent D 94.1 0.082 1.8E-06 62.5 6.5 72 146-221 3-74 (726)
285 PRK10917 ATP-dependent DNA hel 94.1 0.29 6.2E-06 57.3 10.8 78 369-446 309-391 (681)
286 TIGR02881 spore_V_K stage V sp 94.1 0.12 2.6E-06 52.9 6.8 16 163-178 43-58 (261)
287 PRK14964 DNA polymerase III su 94.0 0.7 1.5E-05 51.4 13.0 40 269-309 114-153 (491)
288 PRK08691 DNA polymerase III su 94.0 0.31 6.8E-06 55.9 10.4 40 269-309 117-156 (709)
289 PRK14723 flhF flagellar biosyn 94.0 0.3 6.4E-06 56.8 10.3 17 163-179 186-202 (767)
290 PRK14958 DNA polymerase III su 94.0 0.17 3.7E-06 56.8 8.3 39 270-309 118-156 (509)
291 PRK08939 primosomal protein Dn 93.9 0.36 7.8E-06 50.5 10.1 49 270-318 216-267 (306)
292 PRK14956 DNA polymerase III su 93.9 0.22 4.7E-06 54.9 8.7 39 270-311 120-158 (484)
293 cd00561 CobA_CobO_BtuR ATP:cor 93.9 0.47 1E-05 44.4 9.7 53 269-321 93-147 (159)
294 TIGR03015 pepcterm_ATPase puta 93.9 0.86 1.9E-05 46.6 12.9 31 148-178 24-59 (269)
295 PF05876 Terminase_GpA: Phage 93.9 0.2 4.3E-06 57.0 8.7 125 147-284 16-147 (557)
296 PRK14961 DNA polymerase III su 93.9 0.16 3.4E-06 54.8 7.5 39 270-309 118-156 (363)
297 PF05729 NACHT: NACHT domain 93.9 0.24 5.2E-06 46.2 8.0 45 165-210 3-47 (166)
298 PRK14949 DNA polymerase III su 93.8 0.36 7.7E-06 56.8 10.6 43 270-314 118-160 (944)
299 CHL00181 cbbX CbbX; Provisiona 93.8 0.56 1.2E-05 48.7 11.2 17 162-178 59-75 (287)
300 TIGR01425 SRP54_euk signal rec 93.8 0.85 1.9E-05 49.7 12.9 131 164-323 102-235 (429)
301 TIGR02785 addA_Gpos recombinat 93.8 0.12 2.5E-06 64.6 7.1 68 147-219 1-68 (1232)
302 PF00308 Bac_DnaA: Bacterial d 93.8 0.19 4.2E-06 49.9 7.4 107 164-316 36-144 (219)
303 COG1110 Reverse gyrase [DNA re 93.8 0.27 5.7E-06 57.6 9.2 72 359-430 114-191 (1187)
304 COG3421 Uncharacterized protei 93.7 0.077 1.7E-06 58.3 4.7 142 167-314 2-167 (812)
305 PRK07471 DNA polymerase III su 93.7 0.34 7.3E-06 52.1 9.6 134 164-312 43-181 (365)
306 PRK14952 DNA polymerase III su 93.7 0.64 1.4E-05 52.9 12.2 40 269-309 116-155 (584)
307 PRK12724 flagellar biosynthesi 93.7 0.72 1.6E-05 50.0 11.9 53 271-323 299-356 (432)
308 TIGR00064 ftsY signal recognit 93.7 1.1 2.3E-05 46.2 12.9 53 271-323 154-213 (272)
309 PRK14951 DNA polymerase III su 93.6 0.22 4.8E-06 56.9 8.4 40 269-309 122-161 (618)
310 PHA03368 DNA packaging termina 93.6 0.4 8.7E-06 54.2 10.1 135 162-314 254-392 (738)
311 PRK00411 cdc6 cell division co 93.6 0.33 7.2E-06 52.8 9.6 25 163-188 56-80 (394)
312 PRK05580 primosome assembly pr 93.5 0.29 6.3E-06 57.2 9.5 77 370-447 190-267 (679)
313 PRK05707 DNA polymerase III su 93.5 0.11 2.4E-06 54.9 5.5 40 148-188 4-47 (328)
314 PRK14960 DNA polymerase III su 93.4 0.68 1.5E-05 52.9 11.6 41 270-312 117-157 (702)
315 COG0552 FtsY Signal recognitio 93.4 0.98 2.1E-05 47.0 11.8 130 165-323 142-280 (340)
316 PRK07994 DNA polymerase III su 93.4 0.62 1.3E-05 53.5 11.5 38 270-308 118-155 (647)
317 PLN03025 replication factor C 93.4 0.75 1.6E-05 48.6 11.5 42 270-313 98-139 (319)
318 TIGR00708 cobA cob(I)alamin ad 93.2 0.12 2.7E-06 48.9 4.7 53 270-322 96-150 (173)
319 TIGR00595 priA primosomal prot 93.0 0.35 7.7E-06 54.3 8.9 76 370-446 25-101 (505)
320 PRK06995 flhF flagellar biosyn 93.0 1.2 2.5E-05 49.5 12.5 17 162-178 256-272 (484)
321 COG0470 HolB ATPase involved i 93.0 0.2 4.3E-06 52.8 6.5 40 269-309 107-146 (325)
322 PRK14957 DNA polymerase III su 92.9 0.91 2E-05 51.2 11.8 40 269-309 117-156 (546)
323 PRK04195 replication factor C 92.9 0.56 1.2E-05 52.6 10.1 17 162-178 39-55 (482)
324 TIGR02880 cbbX_cfxQ probable R 92.8 0.23 5.1E-06 51.4 6.5 18 162-179 58-75 (284)
325 PRK10867 signal recognition pa 92.8 1.4 3E-05 48.4 12.6 15 164-178 102-116 (433)
326 PRK13851 type IV secretion sys 92.7 0.13 2.8E-06 54.6 4.5 43 159-208 159-201 (344)
327 cd01122 GP4d_helicase GP4d_hel 92.7 0.26 5.5E-06 50.7 6.6 40 160-204 28-67 (271)
328 COG2804 PulE Type II secretory 92.6 0.18 3.8E-06 55.2 5.4 41 149-190 243-285 (500)
329 PRK14969 DNA polymerase III su 92.6 0.78 1.7E-05 51.9 10.9 40 269-309 117-156 (527)
330 TIGR02928 orc1/cdc6 family rep 92.5 0.99 2.1E-05 48.5 11.3 25 163-188 41-65 (365)
331 PRK14965 DNA polymerase III su 92.5 1.3 2.8E-05 50.7 12.5 40 269-309 117-156 (576)
332 KOG0745 Putative ATP-dependent 92.4 0.13 2.9E-06 54.6 4.0 25 162-188 226-250 (564)
333 cd03115 SRP The signal recogni 92.4 2.2 4.9E-05 40.3 12.3 22 165-187 3-24 (173)
334 PF05621 TniB: Bacterial TniB 92.3 0.92 2E-05 46.8 9.8 114 163-304 62-180 (302)
335 TIGR00643 recG ATP-dependent D 92.2 0.71 1.5E-05 53.6 10.2 78 369-446 283-365 (630)
336 TIGR02760 TraI_TIGR conjugativ 92.2 0.41 8.8E-06 62.2 8.8 62 146-212 1018-1084(1960)
337 PRK06645 DNA polymerase III su 92.1 0.92 2E-05 50.8 10.5 16 164-179 45-60 (507)
338 PRK14963 DNA polymerase III su 92.1 0.8 1.7E-05 51.4 10.0 23 165-188 39-61 (504)
339 PRK06964 DNA polymerase III su 92.1 1.2 2.6E-05 47.3 10.9 42 269-311 130-171 (342)
340 TIGR03499 FlhF flagellar biosy 92.0 0.27 5.8E-06 50.9 5.8 17 162-178 194-210 (282)
341 PRK13900 type IV secretion sys 92.0 0.35 7.6E-06 51.2 6.8 42 160-208 158-199 (332)
342 TIGR00959 ffh signal recogniti 92.0 2.7 5.9E-05 46.0 13.8 53 271-323 182-235 (428)
343 PRK14955 DNA polymerase III su 92.0 1.3 2.9E-05 48.3 11.4 41 269-311 125-165 (397)
344 PF06745 KaiC: KaiC; InterPro 91.9 0.21 4.5E-06 49.9 4.7 131 162-312 19-160 (226)
345 COG2256 MGS1 ATPase related to 91.9 0.46 1E-05 50.4 7.2 17 163-179 49-65 (436)
346 PF01695 IstB_IS21: IstB-like 91.9 0.2 4.4E-06 48.0 4.4 46 159-211 44-89 (178)
347 TIGR00580 mfd transcription-re 91.8 0.83 1.8E-05 55.0 10.3 78 369-446 499-581 (926)
348 PF00437 T2SE: Type II/IV secr 91.8 0.17 3.7E-06 52.0 4.0 43 160-208 125-167 (270)
349 PRK07940 DNA polymerase III su 91.8 0.94 2E-05 49.2 9.8 47 269-317 115-161 (394)
350 PRK14950 DNA polymerase III su 91.7 1.3 2.8E-05 50.9 11.4 41 269-311 118-158 (585)
351 PRK06871 DNA polymerase III su 91.7 0.34 7.4E-06 51.0 6.1 41 269-310 105-145 (325)
352 TIGR02533 type_II_gspE general 91.6 0.43 9.3E-06 53.3 7.2 44 140-187 221-266 (486)
353 KOG2036 Predicted P-loop ATPas 91.6 1.3 2.8E-05 49.9 10.5 63 149-216 255-324 (1011)
354 PRK14873 primosome assembly pr 91.6 0.76 1.6E-05 53.2 9.4 76 370-446 188-265 (665)
355 TIGR02525 plasmid_TraJ plasmid 91.6 0.33 7.2E-06 52.1 6.1 27 162-189 149-175 (372)
356 PRK10436 hypothetical protein; 91.6 0.39 8.5E-06 53.1 6.8 38 149-187 203-242 (462)
357 TIGR03877 thermo_KaiC_1 KaiC d 91.6 0.65 1.4E-05 46.7 7.9 51 162-219 21-71 (237)
358 PF13173 AAA_14: AAA domain 91.5 1.7 3.6E-05 39.0 9.8 37 271-310 61-97 (128)
359 COG0630 VirB11 Type IV secreto 91.4 0.52 1.1E-05 49.5 7.2 57 145-208 125-182 (312)
360 COG1435 Tdk Thymidine kinase [ 91.3 0.8 1.7E-05 43.9 7.6 90 164-284 6-95 (201)
361 PRK05563 DNA polymerase III su 91.3 1.5 3.3E-05 50.0 11.3 32 269-301 117-148 (559)
362 PF02572 CobA_CobO_BtuR: ATP:c 91.2 0.78 1.7E-05 43.5 7.4 141 165-322 6-149 (172)
363 TIGR02524 dot_icm_DotB Dot/Icm 91.1 0.38 8.2E-06 51.5 5.9 27 161-188 133-159 (358)
364 KOG0741 AAA+-type ATPase [Post 91.1 2 4.3E-05 47.2 11.0 139 129-316 493-653 (744)
365 PRK05896 DNA polymerase III su 91.1 0.51 1.1E-05 53.5 7.1 39 270-309 118-156 (605)
366 TIGR00678 holB DNA polymerase 91.0 2.2 4.7E-05 41.1 10.7 41 269-311 94-134 (188)
367 PRK13342 recombination factor 91.0 1.1 2.3E-05 49.3 9.4 15 164-178 38-52 (413)
368 cd01129 PulE-GspE PulE/GspE Th 90.9 0.44 9.6E-06 48.8 5.9 44 140-187 59-104 (264)
369 PRK08451 DNA polymerase III su 90.8 1.5 3.3E-05 49.3 10.5 40 269-309 115-154 (535)
370 KOG1513 Nuclear helicase MOP-3 90.8 0.32 6.9E-06 55.2 5.0 76 413-488 850-937 (1300)
371 PRK10416 signal recognition pa 90.8 3.1 6.7E-05 43.8 12.3 54 270-323 195-255 (318)
372 KOG0744 AAA+-type ATPase [Post 90.6 1 2.2E-05 46.4 7.9 114 162-287 177-325 (423)
373 PRK06090 DNA polymerase III su 90.6 0.55 1.2E-05 49.3 6.4 42 269-311 106-147 (319)
374 PRK08533 flagellar accessory p 90.6 1.6 3.5E-05 43.7 9.6 51 161-218 23-73 (230)
375 PRK14962 DNA polymerase III su 90.6 0.85 1.8E-05 50.7 8.2 15 164-178 38-52 (472)
376 KOG1513 Nuclear helicase MOP-3 90.5 0.35 7.7E-06 54.9 5.0 157 145-311 262-453 (1300)
377 PRK10689 transcription-repair 90.5 1.4 3E-05 54.4 10.6 76 369-444 648-728 (1147)
378 cd01126 TraG_VirD4 The TraG/Tr 90.4 0.33 7.1E-06 52.7 4.8 56 164-231 1-56 (384)
379 PRK13341 recombination factor 90.3 1.2 2.7E-05 52.0 9.6 41 271-316 109-149 (725)
380 PRK14954 DNA polymerase III su 90.2 2.1 4.6E-05 49.2 11.2 40 269-309 125-164 (620)
381 TIGR02538 type_IV_pilB type IV 90.2 0.58 1.3E-05 53.4 6.7 44 140-187 295-340 (564)
382 PRK00440 rfc replication facto 90.2 3.4 7.3E-05 43.3 12.2 38 271-309 102-139 (319)
383 PRK07993 DNA polymerase III su 90.1 0.37 8.1E-06 51.1 4.7 42 269-311 106-147 (334)
384 PRK11034 clpA ATP-dependent Cl 89.8 1.7 3.7E-05 51.2 10.2 44 273-316 280-327 (758)
385 KOG0298 DEAD box-containing he 89.8 0.42 9.2E-06 57.1 5.1 107 367-477 1218-1326(1394)
386 cd01130 VirB11-like_ATPase Typ 89.8 0.55 1.2E-05 45.3 5.3 32 147-178 9-41 (186)
387 PRK08699 DNA polymerase III su 89.6 3.6 7.7E-05 43.5 11.6 47 269-317 111-157 (325)
388 PRK04841 transcriptional regul 89.5 2.7 5.9E-05 51.1 12.3 41 273-313 123-163 (903)
389 TIGR03689 pup_AAA proteasome A 89.5 1.2 2.5E-05 49.9 8.2 25 162-187 216-240 (512)
390 TIGR03881 KaiC_arch_4 KaiC dom 89.4 2 4.3E-05 42.8 9.2 50 161-217 19-68 (229)
391 TIGR02639 ClpA ATP-dependent C 89.4 3.3 7.1E-05 49.1 12.3 16 163-178 204-219 (731)
392 PRK14959 DNA polymerase III su 89.3 1.9 4.2E-05 49.2 9.8 46 269-316 117-162 (624)
393 COG0593 DnaA ATPase involved i 89.2 1.4 3.1E-05 47.5 8.3 47 271-317 175-223 (408)
394 KOG0701 dsRNA-specific nucleas 89.0 0.31 6.7E-06 60.4 3.4 94 372-465 294-399 (1606)
395 PF01443 Viral_helicase1: Vira 88.9 0.46 9.9E-06 47.4 4.2 19 165-184 1-19 (234)
396 PRK14948 DNA polymerase III su 88.9 1.1 2.4E-05 51.6 7.6 32 269-301 119-150 (620)
397 KOG0733 Nuclear AAA ATPase (VC 88.6 1.5 3.2E-05 49.0 7.9 48 271-318 604-661 (802)
398 KOG0732 AAA+-type ATPase conta 88.6 0.73 1.6E-05 54.9 6.0 63 251-315 345-417 (1080)
399 PF03237 Terminase_6: Terminas 88.6 4.8 0.0001 42.9 12.2 144 166-326 1-153 (384)
400 KOG0739 AAA+-type ATPase [Post 88.5 5.8 0.00012 40.6 11.3 125 156-330 155-296 (439)
401 PHA00729 NTP-binding motif con 88.5 4.3 9.3E-05 40.3 10.4 74 248-322 60-138 (226)
402 COG1200 RecG RecG-like helicas 88.5 1.9 4.2E-05 48.9 8.9 78 368-445 309-391 (677)
403 PRK11823 DNA repair protein Ra 88.4 1.5 3.2E-05 48.6 8.0 51 162-219 80-130 (446)
404 PRK13764 ATPase; Provisional 88.4 0.47 1E-05 53.9 4.2 27 161-188 256-282 (602)
405 TIGR01243 CDC48 AAA family ATP 88.4 2.1 4.6E-05 50.7 9.9 17 162-178 212-228 (733)
406 COG0513 SrmB Superfamily II DN 88.4 1.1 2.4E-05 50.5 7.3 68 373-444 102-180 (513)
407 TIGR03819 heli_sec_ATPase heli 88.4 0.84 1.8E-05 48.5 5.9 63 137-208 154-217 (340)
408 COG2109 BtuR ATP:corrinoid ade 88.3 1.8 4E-05 41.2 7.3 53 270-322 121-175 (198)
409 KOG0991 Replication factor C, 88.2 1.1 2.4E-05 44.1 5.9 39 269-308 111-149 (333)
410 KOG2028 ATPase related to the 88.2 1.6 3.4E-05 45.7 7.3 49 163-217 163-211 (554)
411 PF08423 Rad51: Rad51; InterP 88.2 0.92 2E-05 46.2 5.8 112 155-284 26-146 (256)
412 TIGR02858 spore_III_AA stage I 88.1 5.1 0.00011 41.1 11.1 32 155-188 101-135 (270)
413 PF02534 T4SS-DNA_transf: Type 88.1 0.56 1.2E-05 52.4 4.6 58 163-232 45-102 (469)
414 KOG1133 Helicase of the DEAD s 88.1 0.54 1.2E-05 52.9 4.2 41 147-187 15-59 (821)
415 PRK07133 DNA polymerase III su 88.0 2.4 5.2E-05 49.3 9.6 38 269-307 116-153 (725)
416 PF06733 DEAD_2: DEAD_2; Inte 87.9 0.3 6.5E-06 46.6 1.9 44 242-285 115-159 (174)
417 TIGR03878 thermo_KaiC_2 KaiC d 87.8 2 4.4E-05 43.8 8.1 37 161-203 35-71 (259)
418 cd00984 DnaB_C DnaB helicase C 87.8 3.5 7.7E-05 41.3 9.8 39 161-204 12-50 (242)
419 PF10593 Z1: Z1 domain; Inter 87.7 2.8 6.2E-05 42.1 8.9 95 385-485 102-201 (239)
420 PRK14701 reverse gyrase; Provi 87.6 2.5 5.5E-05 53.9 10.2 61 369-429 121-187 (1638)
421 COG1219 ClpX ATP-dependent pro 87.5 0.38 8.3E-06 49.3 2.5 25 161-187 96-120 (408)
422 COG1198 PriA Primosomal protei 87.5 1.4 3.1E-05 51.2 7.3 88 355-443 228-318 (730)
423 PRK06647 DNA polymerase III su 87.5 2.7 5.8E-05 47.9 9.5 29 269-298 117-145 (563)
424 PRK06305 DNA polymerase III su 87.5 3.7 8.1E-05 45.5 10.5 37 270-307 120-156 (451)
425 PRK03992 proteasome-activating 87.4 2 4.3E-05 46.7 8.2 16 163-178 166-181 (389)
426 TIGR01389 recQ ATP-dependent D 87.2 7.8 0.00017 44.7 13.4 75 370-444 53-133 (591)
427 PRK07399 DNA polymerase III su 87.1 2.4 5.3E-05 44.5 8.4 40 269-310 122-161 (314)
428 PRK06067 flagellar accessory p 87.1 2.7 6E-05 42.0 8.5 51 162-219 25-75 (234)
429 PRK13897 type IV secretion sys 87.0 0.81 1.8E-05 52.3 5.0 58 163-232 159-216 (606)
430 PRK05973 replicative DNA helic 87.0 0.62 1.3E-05 46.7 3.6 83 130-219 23-114 (237)
431 TIGR00635 ruvB Holliday juncti 86.8 2.2 4.9E-05 44.5 8.0 16 163-178 31-46 (305)
432 KOG0347 RNA helicase [RNA proc 86.8 1.8 3.9E-05 47.6 7.1 69 372-444 265-346 (731)
433 PRK09087 hypothetical protein; 86.7 1.6 3.4E-05 43.6 6.4 38 274-313 90-127 (226)
434 cd03239 ABC_SMC_head The struc 86.7 0.56 1.2E-05 44.9 3.1 41 270-310 115-156 (178)
435 KOG0742 AAA+-type ATPase [Post 86.7 1.1 2.4E-05 47.5 5.3 16 163-178 385-400 (630)
436 cd00268 DEADc DEAD-box helicas 86.7 15 0.00032 35.5 13.3 74 369-446 68-151 (203)
437 TIGR02397 dnaX_nterm DNA polym 86.6 2.1 4.5E-05 45.8 7.8 23 164-187 38-60 (355)
438 PHA03372 DNA packaging termina 86.5 3.5 7.5E-05 46.4 9.3 130 162-313 202-338 (668)
439 cd01121 Sms Sms (bacterial rad 86.4 2.2 4.7E-05 46.0 7.7 51 162-219 82-132 (372)
440 TIGR00767 rho transcription te 86.4 1.1 2.5E-05 48.1 5.4 26 161-187 167-192 (415)
441 COG1132 MdlB ABC-type multidru 86.3 2.7 5.9E-05 48.2 8.9 40 269-308 481-520 (567)
442 COG1618 Predicted nucleotide k 86.2 0.38 8.1E-06 44.6 1.5 118 164-299 7-130 (179)
443 KOG0331 ATP-dependent RNA heli 86.0 8.6 0.00019 42.8 12.0 90 370-463 165-272 (519)
444 cd01131 PilT Pilus retraction 86.0 0.81 1.8E-05 44.7 3.9 39 165-208 4-42 (198)
445 KOG0344 ATP-dependent RNA heli 86.0 8.5 0.00018 42.8 11.8 97 171-281 366-466 (593)
446 COG2909 MalT ATP-dependent tra 86.0 2.6 5.6E-05 49.0 8.2 41 273-313 131-171 (894)
447 TIGR00614 recQ_fam ATP-depende 85.9 8.9 0.00019 42.8 12.6 77 370-446 51-135 (470)
448 PRK07414 cob(I)yrinic acid a,c 85.9 1.8 3.9E-05 41.2 5.9 52 270-321 114-167 (178)
449 PRK05564 DNA polymerase III su 85.6 4.4 9.6E-05 42.6 9.5 41 269-311 91-131 (313)
450 cd03221 ABCF_EF-3 ABCF_EF-3 E 85.6 2.8 6.1E-05 38.5 7.1 39 270-311 87-125 (144)
451 PRK08058 DNA polymerase III su 85.4 6.9 0.00015 41.4 10.9 40 269-309 108-147 (329)
452 PRK14953 DNA polymerase III su 85.4 2.4 5.2E-05 47.4 7.7 41 269-311 117-157 (486)
453 cd01128 rho_factor Transcripti 85.4 2.3 5E-05 43.1 6.8 20 159-178 13-32 (249)
454 PF12846 AAA_10: AAA-like doma 85.3 0.85 1.9E-05 47.2 3.9 43 162-210 1-43 (304)
455 PRK11634 ATP-dependent RNA hel 85.2 6.8 0.00015 45.4 11.4 72 370-445 74-156 (629)
456 cd01393 recA_like RecA is a b 85.2 1.7 3.7E-05 43.1 5.9 45 162-206 19-63 (226)
457 TIGR02788 VirB11 P-type DNA tr 85.1 1 2.2E-05 47.3 4.3 18 161-178 143-160 (308)
458 COG1074 RecB ATP-dependent exo 85.0 1.1 2.4E-05 55.5 5.2 57 161-218 15-71 (1139)
459 CHL00176 ftsH cell division pr 84.6 5 0.00011 46.4 9.9 45 272-316 276-333 (638)
460 PRK06904 replicative DNA helic 84.6 5.8 0.00013 44.3 10.2 115 162-285 221-348 (472)
461 COG0541 Ffh Signal recognition 84.5 18 0.00039 39.2 13.1 130 165-323 103-235 (451)
462 TIGR01243 CDC48 AAA family ATP 84.4 2.5 5.4E-05 50.1 7.6 45 271-315 546-601 (733)
463 PF13555 AAA_29: P-loop contai 84.4 0.95 2.1E-05 35.0 2.7 24 162-187 23-46 (62)
464 KOG2543 Origin recognition com 84.2 10 0.00022 40.3 10.9 46 271-316 115-162 (438)
465 PRK14971 DNA polymerase III su 84.1 8.4 0.00018 44.5 11.5 41 269-311 119-159 (614)
466 PF03969 AFG1_ATPase: AFG1-lik 83.9 12 0.00026 40.2 11.8 110 162-316 62-172 (362)
467 PRK11776 ATP-dependent RNA hel 83.8 7 0.00015 43.5 10.5 74 370-447 72-156 (460)
468 KOG0060 Long-chain acyl-CoA tr 83.5 0.7 1.5E-05 51.2 2.3 47 251-299 570-616 (659)
469 PRK14970 DNA polymerase III su 83.5 6 0.00013 42.6 9.6 15 164-178 41-55 (367)
470 TIGR03346 chaperone_ClpB ATP-d 83.4 5.3 0.00012 48.2 9.9 16 163-178 195-210 (852)
471 KOG0333 U5 snRNP-like RNA heli 83.3 4.1 8.9E-05 44.7 7.8 71 195-276 516-590 (673)
472 TIGR01420 pilT_fam pilus retra 83.3 1.3 2.8E-05 47.3 4.3 42 162-208 122-163 (343)
473 PF03266 NTPase_1: NTPase; In 83.2 0.49 1.1E-05 44.9 0.9 28 270-297 94-123 (168)
474 TIGR02868 CydC thiol reductant 83.1 2 4.3E-05 48.8 6.0 26 161-188 360-385 (529)
475 PF01637 Arch_ATPase: Archaeal 83.1 0.32 7E-06 48.2 -0.4 40 273-312 120-165 (234)
476 PF04931 DNA_pol_phi: DNA poly 83.0 0.72 1.6E-05 55.0 2.3 6 134-139 739-744 (784)
477 PRK13850 type IV secretion sys 82.9 1.4 3.1E-05 51.0 4.6 57 163-231 140-196 (670)
478 TIGR00763 lon ATP-dependent pr 82.9 4.9 0.00011 47.9 9.3 17 162-178 347-363 (775)
479 KOG0339 ATP-dependent RNA heli 82.8 12 0.00025 41.1 10.8 70 371-444 296-376 (731)
480 cd03289 ABCC_CFTR2 The CFTR su 82.7 2.4 5.2E-05 43.7 5.8 42 269-311 154-195 (275)
481 PF12775 AAA_7: P-loop contain 82.7 2.4 5.2E-05 43.6 5.8 20 159-178 30-49 (272)
482 COG0210 UvrD Superfamily I DNA 82.5 2.2 4.8E-05 49.9 6.2 71 147-221 2-72 (655)
483 KOG1807 Helicases [Replication 82.4 2.1 4.6E-05 48.9 5.4 70 147-217 378-448 (1025)
484 KOG1806 DEAD box containing he 82.3 2 4.3E-05 50.5 5.3 71 145-219 736-806 (1320)
485 PRK08506 replicative DNA helic 82.3 4.7 0.0001 45.0 8.3 112 162-284 192-315 (472)
486 PF10412 TrwB_AAD_bind: Type I 81.8 0.79 1.7E-05 49.7 1.9 47 159-211 12-58 (386)
487 CHL00095 clpC Clp protease ATP 81.7 4.3 9.3E-05 48.8 8.3 16 163-178 201-216 (821)
488 KOG2004 Mitochondrial ATP-depe 81.6 5.4 0.00012 45.6 8.2 94 148-284 416-518 (906)
489 COG1197 Mfd Transcription-repa 81.6 6.4 0.00014 47.6 9.3 79 366-444 639-722 (1139)
490 COG4626 Phage terminase-like p 81.5 10 0.00022 42.3 10.2 146 147-310 61-223 (546)
491 COG2255 RuvB Holliday junction 81.3 2.6 5.6E-05 42.9 5.1 15 164-178 54-68 (332)
492 TIGR03600 phage_DnaB phage rep 81.3 6.7 0.00014 43.2 9.0 38 161-203 193-230 (421)
493 cd03247 ABCC_cytochrome_bd The 81.3 5 0.00011 38.2 7.1 41 269-310 114-154 (178)
494 COG2842 Uncharacterized ATPase 81.1 6.8 0.00015 40.2 8.1 115 157-313 89-203 (297)
495 cd01127 TrwB Bacterial conjuga 81.0 1.1 2.3E-05 49.2 2.6 49 156-210 36-84 (410)
496 TIGR02640 gas_vesic_GvpN gas v 80.9 1.4 3.1E-05 45.0 3.4 26 153-178 12-37 (262)
497 PRK10865 protein disaggregatio 80.9 6.8 0.00015 47.2 9.5 16 163-178 200-215 (857)
498 PF03796 DnaB_C: DnaB-like hel 80.8 7.8 0.00017 39.4 8.8 115 162-285 19-144 (259)
499 TIGR03345 VI_ClpV1 type VI sec 80.6 12 0.00026 45.0 11.4 27 152-178 192-224 (852)
500 TIGR01241 FtsH_fam ATP-depende 80.6 6 0.00013 44.5 8.6 103 163-315 89-204 (495)
No 1
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-102 Score=794.95 Aligned_cols=460 Identities=62% Similarity=0.962 Sum_probs=448.2
Q ss_pred CCCCCCCCCCCCcccC---CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHH
Q 005773 110 TKSFFAPADGASFHAN---SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLER 186 (678)
Q Consensus 110 ~~~~~~~~~~~~~~~~---~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~ 186 (678)
...||++.++.+.... +|.+++|+++|+++|..+||..|||||..+||.++.|+|+|.||.||||||.+|++|+|++
T Consensus 163 ~~~Ffa~~dg~s~~~~~~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLER 242 (691)
T KOG0338|consen 163 KKFFFATEDGVSADTQMNESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILER 242 (691)
T ss_pred ccccccccchhhhhhHHhhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHH
Confidence 4567888877666554 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCc
Q 005773 187 LLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS 266 (678)
Q Consensus 187 l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~ 266 (678)
|++++.+....+||||||||+|+.|++.+.+++++|+.+.|++++||.+...+...|+.+|||||+|||||++||+|.+.
T Consensus 243 LlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~s 322 (691)
T KOG0338|consen 243 LLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPS 322 (691)
T ss_pred HhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEE
Q 005773 267 VDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEV 346 (678)
Q Consensus 267 ~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~ 346 (678)
|++++|.+||+||||+||+.||...+.+|++.||+++|+++|||||+..+.+++.+.+++|+.+.+++....++.++|.|
T Consensus 323 f~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEF 402 (691)
T KOG0338|consen 323 FNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEF 402 (691)
T ss_pred ccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEE
Q 005773 347 VRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426 (678)
Q Consensus 347 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLva 426 (678)
+++++.....+..++..++.+.+..++|||+.|++.|++|..+|+.+|++++.|||+++|.+|.+.++.|++++++||||
T Consensus 403 iRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLia 482 (691)
T KOG0338|consen 403 IRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIA 482 (691)
T ss_pred heeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHH---hcCccchhhhhhhhH
Q 005773 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR---AGSKLKSRIVAEQSI 503 (678)
Q Consensus 427 T~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~---~~~~~~~~~~~~~~~ 503 (678)
||+++|||||++|.+||||.+|.+...|+||+|||+|+|+.|.+++|+.+.|+++++.|.+. .+.+++.+++++..+
T Consensus 483 TDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~I 562 (691)
T KOG0338|consen 483 TDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEVI 562 (691)
T ss_pred echhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccHHHHHHHH
Q 005773 504 TKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAV 569 (678)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 569 (678)
..|...+++|++.+..++.++++++.+.++++.+.+++||++|.+++.+||.|+||+++.+++..+
T Consensus 563 ek~~~~ieemE~~iq~vl~eE~~ekel~~ae~ql~k~en~Le~g~ei~arprRtWFqte~~kk~~K 628 (691)
T KOG0338|consen 563 EKFRKKIEEMEDTIQAVLDEEREEKELSKAEAQLEKGENMLEHGDEIYARPRRTWFQTEKDKKASK 628 (691)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccccCccchhhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988764
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-75 Score=579.02 Aligned_cols=373 Identities=42% Similarity=0.667 Sum_probs=354.5
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEE
Q 005773 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl 202 (678)
...+|.+|++.+.|+++|..+|+..||+||.++||.++.|+|+|+.|.||||||.+|+||++++|+..++ .+.+|||
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~---~~~~lVL 135 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK---LFFALVL 135 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC---CceEEEe
Confidence 3568999999999999999999999999999999999999999999999999999999999999999765 3789999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc
Q 005773 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (678)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (678)
+|||+||.|+.+.+..|....|+++.++.||.+...+...+...|+|+|+|||+|.+|+.+.+.|.+..++++|+||||+
T Consensus 136 tPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADr 215 (476)
T KOG0330|consen 136 TPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADR 215 (476)
T ss_pred cCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHH
Q 005773 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (678)
Q Consensus 283 ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 362 (678)
++++.|...+..|++.+|..+|+++||||||..+.++....+.+|+.+.+...+...+.+.|.+.++.. ..+...|.
T Consensus 216 lLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~---k~K~~yLV 292 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG---KDKDTYLV 292 (476)
T ss_pred hhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc---cccchhHH
Confidence 999999999999999999999999999999999999999999999999998888888889998888754 56777888
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEE
Q 005773 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (678)
Q Consensus 363 ~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (678)
.+++...+..+||||+|...+.+++-+|+..|+.+..|||.|++..|..+++.|++|..+||||||+++||||||.|++|
T Consensus 293 ~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~V 372 (476)
T KOG0330|consen 293 YLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVV 372 (476)
T ss_pred HHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEE
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccchhhhhhh
Q 005773 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQ 501 (678)
Q Consensus 443 I~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~ 501 (678)
||||+|.+..+|+||+||+||+|++|.+|+|++-+|...+.+|+..++.++....++.+
T Consensus 373 VNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~~ 431 (476)
T KOG0330|consen 373 VNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDKN 431 (476)
T ss_pred EecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcchH
Confidence 99999999999999999999999999999999999999999999999888866555543
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-68 Score=567.52 Aligned_cols=360 Identities=39% Similarity=0.581 Sum_probs=324.7
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcC---CCCCCCeEEEE
Q 005773 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYR---PKRIPAIRVLI 201 (678)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~---~~~~~~~~vLI 201 (678)
..|..++|+..+..+++..||..|||||.+.||.++.|+|++..|.||||||++|+||++.++... ..+..+|+|||
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 389999999999999999999999999999999999999999999999999999999999999862 22345889999
Q ss_pred EcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCc
Q 005773 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (678)
Q Consensus 202 l~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah 281 (678)
|+|||+||.|+...+..++....+++.|++||.+...|...+..+.+|+|+|||||+++|... ...|+++.++|+||||
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g-~~~l~~v~ylVLDEAD 249 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEG-SLNLSRVTYLVLDEAD 249 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcC-CccccceeEEEeccHH
Confidence 999999999999999999999999999999999999999999999999999999999999886 7889999999999999
Q ss_pred ccccCChHHHHHHHHHHC-CCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCC--CCCCCceeEEEEEechhhhhHH
Q 005773 282 RLLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA--KRPSTLTEEVVRIRRMREVNQE 358 (678)
Q Consensus 282 ~ll~~gf~~~i~~i~~~~-~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~ 358 (678)
+|+++||...+..|+..+ ++.+|++++|||+|..+..++..++++|+.+.+.... .....+.|....+. ...+.
T Consensus 250 rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~---~~~K~ 326 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD---ETAKL 326 (519)
T ss_pred hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC---HHHHH
Confidence 999999999999999999 5566899999999999999999999999988876442 23345555555544 33344
Q ss_pred HHHHHHhh---ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCC
Q 005773 359 AVLLSLCS---KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435 (678)
Q Consensus 359 ~~l~~~~~---~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlD 435 (678)
..+..++. ...++++||||.|+..|+.|...|...++++..|||+.+|.+|..+|+.|++|++.||||||+|+||||
T Consensus 327 ~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLD 406 (519)
T KOG0331|consen 327 RKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLD 406 (519)
T ss_pred HHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCC
Confidence 44444433 345789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHH
Q 005773 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (678)
Q Consensus 436 i~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~ 488 (678)
||+|++|||||+|.+++.|+||+|||||+|+.|.+++|++..+......+.+.
T Consensus 407 i~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~ 459 (519)
T KOG0331|consen 407 VPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKV 459 (519)
T ss_pred CccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888777766554
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-66 Score=577.26 Aligned_cols=366 Identities=43% Similarity=0.664 Sum_probs=336.8
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcC
Q 005773 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (678)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~P 204 (678)
.+|++|+|++.+++++.++||..|||||..+||.++.|+|+++.|+||||||++|++|+|+.+.........+ +||++|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~-aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVS-ALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCc-eEEECC
Confidence 6799999999999999999999999999999999999999999999999999999999999976431111112 999999
Q ss_pred cHHHHHHHHHHHHHHhhcC-CceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccc
Q 005773 205 TRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (678)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~-~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (678)
||+||.|+++.+..++.+. ++++.+++||.+...+...+..+++|||+|||||++|+... .+.++.++++|+||||+|
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDEADrm 186 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDEADRM 186 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-CcchhhcCEEEeccHhhh
Confidence 9999999999999999998 79999999999999999989888999999999999999986 789999999999999999
Q ss_pred ccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCC--CCCCceeEEEEEechhhhhHHHHH
Q 005773 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK--RPSTLTEEVVRIRRMREVNQEAVL 361 (678)
Q Consensus 284 l~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~l 361 (678)
+++||.+.+..|+..+|..+|+++||||++..+..+.+.++.+|..+.+..... ....+.|.++.+.... .+...+
T Consensus 187 Ld~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~--~k~~~L 264 (513)
T COG0513 187 LDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE--EKLELL 264 (513)
T ss_pred hcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH--HHHHHH
Confidence 999999999999999999999999999999999999999999998888764444 6778888888775432 577788
Q ss_pred HHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccE
Q 005773 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441 (678)
Q Consensus 362 ~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~ 441 (678)
..++......++||||+|+..++.|+..|...|+++..|||+|+|.+|.+++..|++|+.+||||||+++||||||+|++
T Consensus 265 ~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 265 LKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 88888777778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCC-cHHHHHHHHHHhcCccc
Q 005773 442 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKLK 494 (678)
Q Consensus 442 VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~-d~~~l~~i~~~~~~~~~ 494 (678)
|||||+|.++..|+||+|||||+|..|.+++|+++. +...+..|.+..+..+.
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred eEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999986 89999999988655533
No 5
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-67 Score=515.53 Aligned_cols=374 Identities=41% Similarity=0.611 Sum_probs=337.0
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEE
Q 005773 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl 202 (678)
....|+.|||++|+.+.|+.+|+..|||+|+.|||.||.|+|+|.+|.||||||++|.+|+|++|...+. +.-+||+
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~---giFalvl 81 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY---GIFALVL 81 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC---cceEEEe
Confidence 3578999999999999999999999999999999999999999999999999999999999999977654 4568999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccC---ccCCCCeeEEEEeC
Q 005773 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM---SVDLDDLAVLILDE 279 (678)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~---~~~l~~i~~lVvDE 279 (678)
+|||+||.|+.+.|..+.+..++++++++||.+.-.+...|..+|||||+|||+|.+++.... .+.+.+++++|+||
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 999999999999999999999999999999999999999999999999999999999998763 34588999999999
Q ss_pred CcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCC--eEEecCCCCCCCCCceeEEEEEechhhhhH
Q 005773 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKP--LRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357 (678)
Q Consensus 280 ah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (678)
||++++..|...+..+...+|..+|+++||||+++.+..+......++ ..+........+..+.+.++.+.. ..+
T Consensus 162 ADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~---~vk 238 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSI---DVK 238 (442)
T ss_pred hhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecch---hhh
Confidence 999999999999999999999999999999999999998877666653 444455555666777777776643 344
Q ss_pred HHHHHHHhh---ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccC
Q 005773 358 EAVLLSLCS---KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (678)
Q Consensus 358 ~~~l~~~~~---~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl 434 (678)
..++..+++ ....+.++||+++...|+.|+..|..+.+.+..+||.|+|.+|..++.+|+++..+||||||+|+|||
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 555555443 22467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccchhhhhhhh
Q 005773 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQS 502 (678)
Q Consensus 435 Di~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~ 502 (678)
|||.|++|||||+|.+|..|+||+||++|+|+.|.+++|++..|...+.+|++..+.++.+.......
T Consensus 319 DIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~~~ 386 (442)
T KOG0340|consen 319 DIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQRT 386 (442)
T ss_pred CCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999988876554443
No 6
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.5e-66 Score=530.88 Aligned_cols=377 Identities=34% Similarity=0.515 Sum_probs=337.8
Q ss_pred cccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC-CCCCeEEE
Q 005773 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVL 200 (678)
Q Consensus 122 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~vL 200 (678)
.....|..+.|++..+++++.+||..+|++|+..||.++.|+|+++.|.||||||+||+||+++.++.... ..++..+|
T Consensus 79 ~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vl 158 (543)
T KOG0342|consen 79 TTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVL 158 (543)
T ss_pred hhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999987543 23677899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhcC-CceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 005773 201 ILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (678)
Q Consensus 201 Il~Ptr~La~Q~~~~~~~l~~~~-~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (678)
||||||+||.|++.+++++..+. ++.+.++.||.........+..++.|+|+|||||++||.+...+....++++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 99999999999999999999998 99999999999999988888889999999999999999999888888899999999
Q ss_pred CcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCC-CeEEecCCCCC--CCCCceeEEEEEechhhhh
Q 005773 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAK--RPSTLTEEVVRIRRMREVN 356 (678)
Q Consensus 280 ah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~-p~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~ 356 (678)
||+++++||...+..|++.+|+.+|+++||||.++.|.++.+..+.. |+.+....... ....+.|-++.... ..
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~---~~ 315 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPS---DS 315 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccc---cc
Confidence 99999999999999999999999999999999999999999988876 77777665443 33456665555432 23
Q ss_pred HHHHHHHHhhccCC-ceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCC
Q 005773 357 QEAVLLSLCSKTFT-SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435 (678)
Q Consensus 357 ~~~~l~~~~~~~~~-~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlD 435 (678)
....+..++++..+ .++||||+|...+..++.+|+...++|..|||+++|..|..+..+|++.+..||||||+++||+|
T Consensus 316 ~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD 395 (543)
T KOG0342|consen 316 RFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLD 395 (543)
T ss_pred hHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCC
Confidence 35566667776666 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccchhhhhhhhHH
Q 005773 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSIT 504 (678)
Q Consensus 436 i~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~~ 504 (678)
+|+|++||+||+|.++.+|+||+|||||.|+.|.+++|+.+++..+++.+. ..++....+++....
T Consensus 396 ~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~~~~~ 461 (543)
T KOG0342|consen 396 IPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPPLKPE 461 (543)
T ss_pred CCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCCCCHH
Confidence 999999999999999999999999999999999999999999999999998 344554444444433
No 7
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-65 Score=523.33 Aligned_cols=367 Identities=39% Similarity=0.624 Sum_probs=327.2
Q ss_pred CCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCe--EEE
Q 005773 125 NSFMELN--LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAI--RVL 200 (678)
Q Consensus 125 ~~f~~l~--l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~--~vL 200 (678)
.+|++++ |+++++.++...||..+||+|..+||.++.++|+++.++||||||+||++|+++.++.+....++. .+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3566665 559999999999999999999999999999999999999999999999999999998777665554 799
Q ss_pred EEcCcHHHHHHHHHHHHHHhhc-CCceeEEEecCCChHHHHHHhc-CCCCEEEECchHHHHHHhc-cCccCCCCeeEEEE
Q 005773 201 ILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRN-SMSVDLDDLAVLIL 277 (678)
Q Consensus 201 Il~Ptr~La~Q~~~~~~~l~~~-~~~~v~~~~g~~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~-~~~~~l~~i~~lVv 277 (678)
||+|||+||.|+.+++..|... .++++.+++||.+.......++ .++.|+|+|||||.+++.. ...+++.++++||+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999998877 7899999999988877766554 5789999999999999987 33455779999999
Q ss_pred eCCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCC--CCCCceeEEEEEechhhh
Q 005773 278 DEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK--RPSTLTEEVVRIRRMREV 355 (678)
Q Consensus 278 DEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~--~~~~l~~~~~~~~~~~~~ 355 (678)
||||+++++||...+..|+..+|+.+.|-+||||.+..+.++....+.||+.+.+..... .|..+...+..+. ..
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~---a~ 240 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE---AD 240 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEec---HH
Confidence 999999999999999999999999999999999999999999999999999999877665 6777777777664 45
Q ss_pred hHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccccccc
Q 005773 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (678)
Q Consensus 356 ~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~G 433 (678)
.+...+..++......++|||++|...++.....|... ...+..+||.|.+..|..++..|.+....+|+|||+++||
T Consensus 241 eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 241 EKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 66677777877777899999999999999999888755 6789999999999999999999999888899999999999
Q ss_pred CCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccc
Q 005773 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (678)
Q Consensus 434 lDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~ 494 (678)
||||+|++||+||+|.++..|+||+|||||+|+.|.+++|+.+.+..++..+.-+-...+.
T Consensus 321 lDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le 381 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELE 381 (567)
T ss_pred CCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchh
Confidence 9999999999999999999999999999999999999999999988888776554333333
No 8
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-66 Score=531.23 Aligned_cols=375 Identities=35% Similarity=0.569 Sum_probs=340.7
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCC-CCCeEEEEE
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR-IPAIRVLIL 202 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~vLIl 202 (678)
...|++|+|+.+.+++|+..+|..||.+|+.+||.+|.|+|+|.+|.||||||+||++|+|++|+...-. ..+.-+|||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 4579999999999999999999999999999999999999999999999999999999999999875432 346679999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc
Q 005773 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (678)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (678)
.|||+||.|+++++.+++.++.++++++.||......... .+..+|+|||||||+.||.....+..+++.+||+||||+
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eR-i~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR 226 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELER-ISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR 226 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHh-hhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH
Confidence 9999999999999999999999999999999886554443 456799999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCC--CCCCCCCceeEEEEEechhhhhHHHH
Q 005773 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP--SAKRPSTLTEEVVRIRRMREVNQEAV 360 (678)
Q Consensus 283 ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (678)
|+++||...+..|+..+|+.+|+++||||.+..+..++++.+.+|..+.+.. ....|..+.|.++.++ ...+..+
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~---l~~Ki~~ 303 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVP---LEDKIDM 303 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEe---hhhHHHH
Confidence 9999999999999999999999999999999999999999999998887753 3467888999988875 4577788
Q ss_pred HHHHhhccCCceEEEEeccHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCC
Q 005773 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438 (678)
Q Consensus 361 l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~ 438 (678)
|..++..+...++|||+.|++.+..++..|..+ |+++..|||.|+|..|..+...|...+.-||+|||+++||||+|.
T Consensus 304 L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpa 383 (758)
T KOG0343|consen 304 LWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPA 383 (758)
T ss_pred HHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcc
Confidence 999999999999999999999999999999865 889999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCc-HHHHHHHHHHhcCccchhhhhhhhH
Q 005773 439 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIAKRAGSKLKSRIVAEQSI 503 (678)
Q Consensus 439 v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d-~~~l~~i~~~~~~~~~~~~~~~~~~ 503 (678)
|++||+||+|.++.+|+||+||++|.+..|.+++++++.+ ..++..|.+.. +++....+++...
T Consensus 384 VdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~i~~~k~ 448 (758)
T KOG0343|consen 384 VDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIKIDPEKL 448 (758)
T ss_pred cceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhccCHHHh
Confidence 9999999999999999999999999999999999999998 66777777653 5555555554433
No 9
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-64 Score=483.25 Aligned_cols=370 Identities=32% Similarity=0.521 Sum_probs=344.6
Q ss_pred cccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEE
Q 005773 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201 (678)
Q Consensus 122 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLI 201 (678)
....+|+++||+..+++++...||.+|+.+|+.|||+++.|+|+++.+..|+|||.+|.+.+++.+.-.. ...++||
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~---r~tQ~li 100 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV---RETQALI 100 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc---ceeeEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999998875432 3468999
Q ss_pred EcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCc
Q 005773 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (678)
Q Consensus 202 l~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah 281 (678)
|+|||+||.|+.+.+..++.+.++.+..+.||.+.......+..+.+++.+|||++++++... .+.-..++++|+||||
T Consensus 101 lsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~-~L~tr~vkmlVLDEaD 179 (400)
T KOG0328|consen 101 LSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRR-SLRTRAVKMLVLDEAD 179 (400)
T ss_pred ecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhc-cccccceeEEEeccHH
Confidence 999999999999999999999999999999999988888888899999999999999999875 5777899999999999
Q ss_pred ccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHH
Q 005773 282 RLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361 (678)
Q Consensus 282 ~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 361 (678)
.|++.||..++..+.+.+|+..|++++|||+|.++.+....++.+|+.+-+........++.++++.+. .+..+...|
T Consensus 180 emL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve--~EewKfdtL 257 (400)
T KOG0328|consen 180 EMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE--KEEWKFDTL 257 (400)
T ss_pred HHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec--hhhhhHhHH
Confidence 999999999999999999999999999999999999999999999999998877777778999988876 445678888
Q ss_pred HHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccE
Q 005773 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441 (678)
Q Consensus 362 ~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~ 441 (678)
+.+.....-...+|||+|+..+.+|.+.+...++.+..+||+|++++|..++..|+.|+.+|||+||+.+||+|+|.|++
T Consensus 258 cdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVsl 337 (400)
T KOG0328|consen 258 CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSL 337 (400)
T ss_pred HHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEE
Confidence 88887777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccchhh
Q 005773 442 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRI 497 (678)
Q Consensus 442 VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~ 497 (678)
|||||+|.+.+.|+||+||.||.|++|.++.|+...|...++.|++.+...+.+..
T Consensus 338 viNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp 393 (400)
T KOG0328|consen 338 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMP 393 (400)
T ss_pred EEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999999999999999999999999999999999998776665543
No 10
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=5e-64 Score=516.41 Aligned_cols=365 Identities=37% Similarity=0.579 Sum_probs=337.4
Q ss_pred CCcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC------C
Q 005773 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK------R 193 (678)
Q Consensus 120 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~------~ 193 (678)
.+.+..+|++.+++..+++.+...||..|+|||..+||..++++|+|+.+.||||||++|++|++-.+...+. .
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~ 319 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENN 319 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhc
Confidence 4567889999999999999999999999999999999999999999999999999999999999998877662 3
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCee
Q 005773 194 IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273 (678)
Q Consensus 194 ~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~ 273 (678)
..+|.++|++|||+|+.|+.+...+|+...+++++.++||.+...+.-.+..+|+|+|+|||+|++.|.+. .+-+++..
T Consensus 320 ~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr-~lvl~qct 398 (673)
T KOG0333|consen 320 IEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENR-YLVLNQCT 398 (673)
T ss_pred ccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHH-HHHhccCc
Confidence 45889999999999999999999999999999999999999999988888999999999999999999986 56789999
Q ss_pred EEEEeCCcccccCChHHHHHHHHHHCCC-------------------------CccEEEEEeccChhHHHHHHHhcCCCe
Q 005773 274 VLILDEADRLLELGFSAEIHELVRLCPK-------------------------RRQTMLFSATLTEDVDELIKLSLTKPL 328 (678)
Q Consensus 274 ~lVvDEah~ll~~gf~~~i~~i~~~~~~-------------------------~~q~il~SATl~~~~~~l~~~~~~~p~ 328 (678)
+||+||||+|+++||.+.+..++..+|. -+|+++||||+++.+..+++.++.+|+
T Consensus 399 yvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv 478 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV 478 (673)
T ss_pred eEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe
Confidence 9999999999999999999999988873 179999999999999999999999999
Q ss_pred EEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHH
Q 005773 329 RLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQ 408 (678)
Q Consensus 329 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~ 408 (678)
.+.+.......+.+.|.++.+. ...+...|..++......++|||+|+++.|+.|++.|...|+++..|||+-+|++
T Consensus 479 ~vtig~~gk~~~rveQ~v~m~~---ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQ 555 (673)
T KOG0333|consen 479 VVTIGSAGKPTPRVEQKVEMVS---EDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQ 555 (673)
T ss_pred EEEeccCCCCccchheEEEEec---chHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHH
Confidence 9999888877777888777664 3445677777888778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHH
Q 005773 409 RLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (678)
Q Consensus 409 R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~ 488 (678)
|..+++.|++|..+||||||+++||||||+|.+|||||++.++..|+||||||||+|+.|.+++|+++.|-..+..+.+.
T Consensus 556 Re~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~ 635 (673)
T KOG0333|consen 556 RENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQA 635 (673)
T ss_pred HHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997666665544
No 11
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-64 Score=505.69 Aligned_cols=422 Identities=35% Similarity=0.524 Sum_probs=348.7
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC---CCCCeEEEE
Q 005773 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPAIRVLI 201 (678)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~---~~~~~~vLI 201 (678)
.+|++++|+++|++++.++||.+||-||..+||.++.|+|+++.|.||||||.+|+||+++.|+.... ...++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 68999999999999999999999999999999999999999999999999999999999999987543 345788999
Q ss_pred EcCcHHHHHHHHHHHHHHhhcCC--ceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 005773 202 LTPTRELAVQVHSMIEKIAQFTD--IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (678)
Q Consensus 202 l~Ptr~La~Q~~~~~~~l~~~~~--~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (678)
|+||++||.|+|.++.+|..+++ +++.-+....+.......|...|+|||+||++|+.++.......+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999988875 5666667667777777888999999999999999999987657789999999999
Q ss_pred CcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCC-CCCCCceeEEEEEechhhhhHH
Q 005773 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA-KRPSTLTEEVVRIRRMREVNQE 358 (678)
Q Consensus 280 ah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~ 358 (678)
||.++..||.+.+..+...+|+..|.++||||++.++..+..++|++|+.+...... ..+..+.|+.+.+. ..++.
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs---e~DKf 255 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS---EEDKF 255 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec---cchhH
Confidence 999999999999999999999999999999999999999999999999998875443 34567778777764 55667
Q ss_pred HHHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcc---------
Q 005773 359 AVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD--------- 428 (678)
Q Consensus 359 ~~l~~~~~-~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~--------- 428 (678)
.++..+++ ....+++|||+||...+.+|.-+|...|++.++|+|.|+...|..++++|+.|-++|+||||
T Consensus 256 lllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~e 335 (569)
T KOG0346|consen 256 LLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLE 335 (569)
T ss_pred HHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhh
Confidence 66666665 55679999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------------cccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHH
Q 005773 429 --------------------------VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482 (678)
Q Consensus 429 --------------------------~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l 482 (678)
-++||||+.+|.+|||||+|.++..|+||+|||||+|++|.+++|+.+.+..-.
T Consensus 336 ee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~ 415 (569)
T KOG0346|consen 336 EEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGK 415 (569)
T ss_pred ccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhh
Confidence 146999999999999999999999999999999999999999999999887633
Q ss_pred HHHHHHhcC---ccchhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005773 483 KAIAKRAGS---KLKSRIVAEQS--ITKWSKIIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKEE 549 (678)
Q Consensus 483 ~~i~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~ 549 (678)
..|+..... .....++.+-. ........-++++-++......-.+.+++....++...+++..|+++
T Consensus 416 ~~le~~~~d~~~~~~~qilqPY~f~~eevesfryR~eD~~ravTkvAvreaR~kEikqEll~SeKLK~~Fee 487 (569)
T KOG0346|consen 416 ESLESILKDENRQEGRQILQPYQFRMEEVESFRYRAEDALRAVTKVAVREARLKEIKQELLNSEKLKAFFEE 487 (569)
T ss_pred hHHHHHHhhHHhhcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Confidence 333332211 11111111111 11111222233444444444444445555666677777777777654
No 12
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-63 Score=515.84 Aligned_cols=371 Identities=39% Similarity=0.586 Sum_probs=316.6
Q ss_pred CcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchhhhhhhhchhHHHhcCCC-------
Q 005773 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPK------- 192 (678)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g-~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~------- 192 (678)
....+.|.+|+|+..++++|..+||..||+||...||.+..| .|++..|.||||||+||.||+++.+.....
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 445678999999999999999999999999999999999999 699999999999999999999997765432
Q ss_pred ---CCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCc--c
Q 005773 193 ---RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS--V 267 (678)
Q Consensus 193 ---~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~--~ 267 (678)
....+-.||++|||+||.|+.+.+..++.++++++..++||.....+...|...|+|||||||||+.++..... -
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 12334599999999999999999999999999999999999999999999999999999999999999976533 2
Q ss_pred CCCCeeEEEEeCCcccccCChHHHHHHHHHHCC-----CCccEEEEEeccChh---------------------HHHHHH
Q 005773 268 DLDDLAVLILDEADRLLELGFSAEIHELVRLCP-----KRRQTMLFSATLTED---------------------VDELIK 321 (678)
Q Consensus 268 ~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~-----~~~q~il~SATl~~~---------------------~~~l~~ 321 (678)
.+..+.+|||||||+|++.||...+..|++.+. ..+|+++||||++-. +..++.
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 578899999999999999999999998887765 468999999998721 122222
Q ss_pred H--hcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceee
Q 005773 322 L--SLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 399 (678)
Q Consensus 322 ~--~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~ 399 (678)
. +..+|..+...+.......+.+..+.+.. ..+..++..++ ..+++++|||||+...+.+|+-+|+..++....
T Consensus 417 ~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~---~eKD~ylyYfl-~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTPQSATASTLTESLIECPP---LEKDLYLYYFL-TRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred HhCccCCCeeEecCcchhHHHHHHHHhhcCCc---cccceeEEEEE-eecCCceEEEechHHHHHHHHHHHhhcCCCCch
Confidence 1 23456666665555555555554444422 23333333333 446799999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcH
Q 005773 400 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (678)
Q Consensus 400 lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~ 479 (678)
||+.|.|.+|.+.+++|++....||||||+|+||||||+|.|||||..|.+..-|+||.|||+|++..|.+++|+.+.+.
T Consensus 493 LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEV 572 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccch
Q 005773 480 SLLKAIAKRAGSKLKS 495 (678)
Q Consensus 480 ~~l~~i~~~~~~~~~~ 495 (678)
..++.|.+.+.....-
T Consensus 573 ~~~~KL~ktL~k~~dl 588 (731)
T KOG0347|consen 573 GPLKKLCKTLKKKEDL 588 (731)
T ss_pred HHHHHHHHHHhhccCC
Confidence 9999999887655443
No 13
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1e-61 Score=531.85 Aligned_cols=368 Identities=37% Similarity=0.572 Sum_probs=327.4
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC----CCCCeE
Q 005773 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK----RIPAIR 198 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~----~~~~~~ 198 (678)
...+|++++|++.++++|..+||..|||+|.++||.+++|+|++++||||||||++|++|+++.+..... ...+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 3468999999999999999999999999999999999999999999999999999999999999976432 134578
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEe
Q 005773 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (678)
Q Consensus 199 vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvD 278 (678)
+|||+||++||.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|.+++... .+.+.++++||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~-~~~l~~v~~lViD 164 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN-HINLGAIQVVVLD 164 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcccccccEEEEe
Confidence 999999999999999999999999999999999999888888888888999999999999998764 6789999999999
Q ss_pred CCcccccCChHHHHHHHHHHCCC--CccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhh
Q 005773 279 EADRLLELGFSAEIHELVRLCPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (678)
Q Consensus 279 Eah~ll~~gf~~~i~~i~~~~~~--~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (678)
|||+|+++||...+..++..++. .+|+++||||++..+..+....+.+|..+.+.........+.+.+... ....
T Consensus 165 Ead~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~---~~~~ 241 (423)
T PRK04837 165 EADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP---SNEE 241 (423)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC---CHHH
Confidence 99999999999999999999884 567899999999999999988999998887655444444454443322 2234
Q ss_pred HHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCC
Q 005773 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (678)
Q Consensus 357 ~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi 436 (678)
+...+..++......++||||+++..++.+...|...++.+..+||+|++.+|..+++.|++|+++|||||++++||||+
T Consensus 242 k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 242 KMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCc
Confidence 55566666666667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccc
Q 005773 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (678)
Q Consensus 437 ~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~ 494 (678)
|+|++|||||+|.++..|+||+||+||.|+.|.|++|+++.+...+..|.+..+..+.
T Consensus 322 p~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~ 379 (423)
T PRK04837 322 PAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIP 379 (423)
T ss_pred cccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999998888888777665543
No 14
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-62 Score=507.12 Aligned_cols=372 Identities=36% Similarity=0.531 Sum_probs=322.3
Q ss_pred CCCCCcccCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC---
Q 005773 117 ADGASFHANSFMELNLSRPLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--- 192 (678)
Q Consensus 117 ~~~~~~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~--- 192 (678)
....++....|..|||++.+...|.. +++..||.+|+++||.+++|+|++|.++||||||++|++|+++.|.....
T Consensus 128 v~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~ 207 (708)
T KOG0348|consen 128 VSEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ 207 (708)
T ss_pred ccccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc
Confidence 34456777899999999999999965 79999999999999999999999999999999999999999999987654
Q ss_pred CCCCeEEEEEcCcHHHHHHHHHHHHHHhhc-CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCC
Q 005773 193 RIPAIRVLILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (678)
Q Consensus 193 ~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~-~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~ 271 (678)
+..++-+|||+|||+||.|+|+.+.+|... +.+..+.+.||...+.....|+.+++|+|+|||||++||.+...+.++.
T Consensus 208 Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~ 287 (708)
T KOG0348|consen 208 RSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSR 287 (708)
T ss_pred ccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeee
Confidence 345788999999999999999999999765 4566788999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCCcccccCChHHHHHHHHHHC-------------CCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCC---
Q 005773 272 LAVLILDEADRLLELGFSAEIHELVRLC-------------PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPS--- 335 (678)
Q Consensus 272 i~~lVvDEah~ll~~gf~~~i~~i~~~~-------------~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~--- 335 (678)
+.+||+||||+|++.||...|..|++.+ |...|.|++|||+++.+..+....+.+|+.+..+..
T Consensus 288 LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~ 367 (708)
T KOG0348|consen 288 LRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQ 367 (708)
T ss_pred eeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhh
Confidence 9999999999999999999999998776 234789999999999999999999999999873211
Q ss_pred ----------------------CCCCCCceeEEEEEechh-hhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhh
Q 005773 336 ----------------------AKRPSTLTEEVVRIRRMR-EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL 392 (678)
Q Consensus 336 ----------------------~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~ 392 (678)
...|..+.|.++.+++.- ...-...+...+......++|||+.+.+.++.-+..|..
T Consensus 368 ~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~ 447 (708)
T KOG0348|consen 368 LNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSE 447 (708)
T ss_pred cCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHh
Confidence 223444556666655422 122223344445555567999999999999988777742
Q ss_pred ----------------------cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCC
Q 005773 393 ----------------------AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 450 (678)
Q Consensus 393 ----------------------~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s 450 (678)
.+.++..|||+|+|++|..+++.|......||+|||+++||||+|.|++||+||+|.+
T Consensus 448 ~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s 527 (708)
T KOG0348|consen 448 ALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFS 527 (708)
T ss_pred hhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCC
Confidence 2356889999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHH
Q 005773 451 LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (678)
Q Consensus 451 ~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~ 488 (678)
+.+|+||+|||+|+|..|.+++|+.+.+..++..+...
T Consensus 528 ~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 528 TADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 99999999999999999999999999999988887764
No 15
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=5.7e-60 Score=533.56 Aligned_cols=370 Identities=38% Similarity=0.625 Sum_probs=332.5
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
..+|.+|+|++.++++|.++||..|||+|.++||.++.|+|+|+.||||||||++|++|+++.+... ...+++|||+
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~---~~~~~~LIL~ 81 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE---LKAPQILVLA 81 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc---cCCCeEEEEe
Confidence 3469999999999999999999999999999999999999999999999999999999999988543 2357899999
Q ss_pred CcHHHHHHHHHHHHHHhhcC-CceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc
Q 005773 204 PTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (678)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~-~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (678)
||++||.|+++.+..+.... ++.+..++|+.+...+...+..+++|||+||++|++++... .+.++++.+|||||||+
T Consensus 82 PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~-~l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 82 PTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG-TLDLSKLSGLVLDEADE 160 (629)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcchhhceEEEeccHHH
Confidence 99999999999999987664 78999999999888888888889999999999999999874 57799999999999999
Q ss_pred cccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHH
Q 005773 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (678)
Q Consensus 283 ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 362 (678)
|++++|...+..++..+|..+|+++||||+++.+..+...++.+|..+.+.........+.+.++.+.. ..+...+.
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~---~~k~~~L~ 237 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG---MRKNEALV 237 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech---hhHHHHHH
Confidence 999999999999999999999999999999999999999999999888776555445556666655432 34445566
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEE
Q 005773 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (678)
Q Consensus 363 ~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (678)
.++......++||||+|+..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++|
T Consensus 238 ~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 238 RFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 66665556789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccchhhhhh
Q 005773 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAE 500 (678)
Q Consensus 443 I~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~ 500 (678)
||||+|.++..|+||+|||||+|+.|.+++|+.+.+..+++.|.+..+..+....++.
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~ 375 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN 375 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCc
Confidence 9999999999999999999999999999999999999999999998888776654444
No 16
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.1e-60 Score=532.77 Aligned_cols=365 Identities=35% Similarity=0.531 Sum_probs=320.2
Q ss_pred CCcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC--CCCCe
Q 005773 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAI 197 (678)
Q Consensus 120 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~~ 197 (678)
.+.+..+|.+++|++.++++|..+||..|||+|.++||.++.|+|+|+++|||||||++|++|++.++...+. ...++
T Consensus 125 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp 204 (545)
T PTZ00110 125 VPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGP 204 (545)
T ss_pred CCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCc
Confidence 4556789999999999999999999999999999999999999999999999999999999999998875432 23467
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEE
Q 005773 198 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277 (678)
Q Consensus 198 ~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVv 277 (678)
.+|||+|||+||.|+++.+..++...++++.+++|+.....+...+..+++|+|+||++|++++... ...+.++++|||
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~-~~~l~~v~~lVi 283 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN-VTNLRRVTYLVL 283 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC-CCChhhCcEEEe
Confidence 8999999999999999999999988899999999999988888888899999999999999999874 567899999999
Q ss_pred eCCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcC-CCeEEecCCCC-CCCCCceeEEEEEechhhh
Q 005773 278 DEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLT-KPLRLSADPSA-KRPSTLTEEVVRIRRMREV 355 (678)
Q Consensus 278 DEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~-~p~~~~~~~~~-~~~~~l~~~~~~~~~~~~~ 355 (678)
||||+|++++|...+..++..+++.+|+++||||++.++..+...++. .|+.+.+.... .....+.+.+..+.. .
T Consensus 284 DEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~---~ 360 (545)
T PTZ00110 284 DEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE---H 360 (545)
T ss_pred ehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec---h
Confidence 999999999999999999999999999999999999999999888775 57766554322 222345555544432 2
Q ss_pred hHHHHHHHHhhcc--CCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccccccc
Q 005773 356 NQEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (678)
Q Consensus 356 ~~~~~l~~~~~~~--~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~G 433 (678)
.+...+..++... .+.++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+..|||||++++||
T Consensus 361 ~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rG 440 (545)
T PTZ00110 361 EKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRG 440 (545)
T ss_pred hHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcC
Confidence 3334444444332 46799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHH
Q 005773 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (678)
Q Consensus 434 lDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~ 488 (678)
||||+|++|||||+|.++..|+||+|||||+|+.|.|++|+++.+...++.+.+.
T Consensus 441 IDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~ 495 (545)
T PTZ00110 441 LDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKV 495 (545)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988777766554
No 17
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.8e-60 Score=525.55 Aligned_cols=365 Identities=39% Similarity=0.624 Sum_probs=326.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC---CCCCeEEEEE
Q 005773 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPAIRVLIL 202 (678)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~---~~~~~~vLIl 202 (678)
+|++|+|+++++++|.++||..|||+|.++||.++.|+|+++++|||||||++|++|+++.+..... ...++++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999865432 1234689999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc
Q 005773 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (678)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (678)
+||++||.|+++.+..+....++.+..++|+.+...+...+...++|+|+||++|++++... .+.++++++|||||||+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~-~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN-AVKLDQVEILVLDEADR 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC-CcccccceEEEeecHHH
Confidence 99999999999999999998899999999999988888888889999999999999988764 56789999999999999
Q ss_pred cccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHH
Q 005773 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (678)
Q Consensus 283 ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 362 (678)
|++++|...+..++..++..+|+++||||+++.+..+...++.+|..+.+.........+.+.+..+. ...+...+.
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---~~~k~~~l~ 237 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVD---KKRKRELLS 237 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcC---HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987776544444445555554432 233445555
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEE
Q 005773 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (678)
Q Consensus 363 ~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (678)
.++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||||+|++|
T Consensus 238 ~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 238 QMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 66665566799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccc
Q 005773 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (678)
Q Consensus 443 I~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~ 494 (678)
|||++|.++.+|+||+|||||+|..|.+++|++..+..+++.|++.+...+.
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~ 369 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIP 369 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999887765553
No 18
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3e-60 Score=533.17 Aligned_cols=368 Identities=37% Similarity=0.577 Sum_probs=328.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC----CCCCeEEE
Q 005773 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK----RIPAIRVL 200 (678)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~----~~~~~~vL 200 (678)
.+|++|+|++.++++|..+||..|||+|.++||.++.|+|+++++|||||||++|++|+++++..... ....+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 46999999999999999999999999999999999999999999999999999999999999875431 12357899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCC
Q 005773 201 ILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280 (678)
Q Consensus 201 Il~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEa 280 (678)
||+||++||.|+++.+..++...++++..++|+.....+...+..+++|||+||++|++++.+...+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 99999999999999999999989999999999999888888888889999999999999998765577889999999999
Q ss_pred cccccCChHHHHHHHHHHCCC--CccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHH
Q 005773 281 DRLLELGFSAEIHELVRLCPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358 (678)
Q Consensus 281 h~ll~~gf~~~i~~i~~~~~~--~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (678)
|+|++++|...+..++..++. .+|+++||||++..+..+...++..|..+.+.........+.+.++.. ....+.
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~---~~~~k~ 245 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP---ADEEKQ 245 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec---CHHHHH
Confidence 999999999999999999886 789999999999999999999998887776544443444455544432 233455
Q ss_pred HHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCC
Q 005773 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438 (678)
Q Consensus 359 ~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~ 438 (678)
..+..++....+.++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+
T Consensus 246 ~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~ 325 (572)
T PRK04537 246 TLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDG 325 (572)
T ss_pred HHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccC
Confidence 56666666666789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccch
Q 005773 439 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (678)
Q Consensus 439 v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~ 495 (678)
|++|||||+|.++..|+||+||+||.|..|.|++|+++.+...+..|.+.+..++..
T Consensus 326 V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~ 382 (572)
T PRK04537 326 VKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPV 382 (572)
T ss_pred CCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCc
Confidence 999999999999999999999999999999999999999988899998877666543
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.9e-60 Score=523.52 Aligned_cols=364 Identities=37% Similarity=0.584 Sum_probs=328.6
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
..+|.+++|++.+++++..+||..|||+|.++||.++.|+|++++||||||||++|++|+++.+.... ..+++|||+
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~---~~~~~lil~ 79 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR---FRVQALVLC 79 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc---CCceEEEEe
Confidence 35799999999999999999999999999999999999999999999999999999999999985432 245799999
Q ss_pred CcHHHHHHHHHHHHHHhhcC-CceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc
Q 005773 204 PTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (678)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~-~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (678)
||++||.|+.+.++.++... ++++..++|+.+...+...+..+++|+|+||++|.+++... .+.+.++++|||||||+
T Consensus 80 PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~-~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 80 PTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG-TLDLDALNTLVLDEADR 158 (460)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC-CccHHHCCEEEEECHHH
Confidence 99999999999999987654 78999999999998888888899999999999999999874 57789999999999999
Q ss_pred cccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHH
Q 005773 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (678)
Q Consensus 283 ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 362 (678)
|+++||...+..++..+|..+|+++||||+++.+..+...++.+|..+.+.... ....+.+.++.+.. ..+...+.
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~---~~k~~~l~ 234 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSP---DERLPALQ 234 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCc---HHHHHHHH
Confidence 999999999999999999999999999999999999999999999888775544 33446666665543 23556666
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEE
Q 005773 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (678)
Q Consensus 363 ~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (678)
.++....+.++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|||+|++++|
T Consensus 235 ~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~V 314 (460)
T PRK11776 235 RLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAV 314 (460)
T ss_pred HHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeE
Confidence 66666667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccch
Q 005773 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (678)
Q Consensus 443 I~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~ 495 (678)
|+||+|.++..|+||+|||||+|+.|.|++|+++.+...+..+.+..+..+..
T Consensus 315 I~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 315 INYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred EEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 99999999999999999999999999999999999999999998877765554
No 20
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-62 Score=473.94 Aligned_cols=370 Identities=33% Similarity=0.529 Sum_probs=339.7
Q ss_pred CCCCcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCe
Q 005773 118 DGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAI 197 (678)
Q Consensus 118 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 197 (678)
+......+.|+++.|.+.|+..+.+.||..|+|+|.++||.++.|+|+++.|..|+|||.+|++|+|+.+.... ...
T Consensus 78 DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~---~~I 154 (459)
T KOG0326|consen 78 DVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK---NVI 154 (459)
T ss_pred ccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc---cce
Confidence 33344567899999999999999999999999999999999999999999999999999999999999985543 356
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEE
Q 005773 198 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277 (678)
Q Consensus 198 ~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVv 277 (678)
+++|++|||+||.|+...+..++++.++.|...+||.+.....-.+....+++|+||||+++++... -..++...++|+
T Consensus 155 Q~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg-Va~ls~c~~lV~ 233 (459)
T KOG0326|consen 155 QAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG-VADLSDCVILVM 233 (459)
T ss_pred eEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc-cccchhceEEEe
Confidence 7899999999999999999999999999999999999988888888889999999999999988875 456899999999
Q ss_pred eCCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhH
Q 005773 278 DEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357 (678)
Q Consensus 278 DEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (678)
||||.+++..|...+..++..+|+.+|++++|||.|-.+..+...++++|..+..-.+. .+.+++|++..+ .+..+
T Consensus 234 DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eL-tl~GvtQyYafV---~e~qK 309 (459)
T KOG0326|consen 234 DEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEEL-TLKGVTQYYAFV---EERQK 309 (459)
T ss_pred chhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhh-hhcchhhheeee---chhhh
Confidence 99999999999999999999999999999999999999999999999999998875443 345677766655 34566
Q ss_pred HHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC
Q 005773 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (678)
Q Consensus 358 ~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~ 437 (678)
..-+..++.+..-...||||||...++.++......|+++.++|+.|-|+.|.+++..|++|.++.|||||++.|||||+
T Consensus 310 vhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiq 389 (459)
T KOG0326|consen 310 VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQ 389 (459)
T ss_pred hhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccc
Confidence 66777777777778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccch
Q 005773 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (678)
Q Consensus 438 ~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~ 495 (678)
.|++|||||+|.++++|+||+||+||.|..|.++.|++..|+..+..|++.+|..++.
T Consensus 390 avNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~p 447 (459)
T KOG0326|consen 390 AVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKP 447 (459)
T ss_pred eeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999999999999999987764
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6e-59 Score=512.23 Aligned_cols=365 Identities=40% Similarity=0.624 Sum_probs=325.1
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC-CCCCeEEEEEcC
Q 005773 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLILTP 204 (678)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~vLIl~P 204 (678)
+|++++|++.+++++..+||..|+++|.++||.++.|+|+++++|||+|||++|++|+++++...+. ...++++|||+|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 6899999999999999999999999999999999999999999999999999999999999875322 123568999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc
Q 005773 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (678)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (678)
|++||.|+++.+..++.+.++++..++|+.....+...+..+++|+|+||++|++++... .+.+.++++|||||||+|+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~-~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEE-NFDCRAVETLILDEADRML 160 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CcCcccCCEEEEECHHHHh
Confidence 999999999999999999999999999999988888888889999999999999998774 5778999999999999999
Q ss_pred cCChHHHHHHHHHHCCCCccEEEEEeccCh-hHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHH
Q 005773 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (678)
Q Consensus 285 ~~gf~~~i~~i~~~~~~~~q~il~SATl~~-~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 363 (678)
+++|...+..+...++...|+++||||++. .+..+....+.+|+.+...........+.+.+.... ....+...+..
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~--~~~~k~~~l~~ 238 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRAD--DLEHKTALLCH 238 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeC--CHHHHHHHHHH
Confidence 999999999999999999999999999985 577888888888988877665554555655554433 22345566666
Q ss_pred HhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEE
Q 005773 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (678)
Q Consensus 364 ~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI 443 (678)
++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||
T Consensus 239 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI 318 (434)
T PRK11192 239 LLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI 318 (434)
T ss_pred HHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE
Confidence 66665678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCcc
Q 005773 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKL 493 (678)
Q Consensus 444 ~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~ 493 (678)
|||+|.++..|+||+|||||+|..|.+++|++..|...+..+.+.+...+
T Consensus 319 ~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~ 368 (434)
T PRK11192 319 NFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPL 368 (434)
T ss_pred EECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999888888776554443
No 22
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.1e-59 Score=520.16 Aligned_cols=365 Identities=31% Similarity=0.502 Sum_probs=318.9
Q ss_pred CCcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCC----CCCC
Q 005773 120 ASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP----KRIP 195 (678)
Q Consensus 120 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~----~~~~ 195 (678)
.+.+..+|.+++|++.++++|...||..|||+|.++||.++.|+|+++++|||||||++|++|++.++.... ....
T Consensus 116 ~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~ 195 (518)
T PLN00206 116 VPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQR 195 (518)
T ss_pred CCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccC
Confidence 345678899999999999999999999999999999999999999999999999999999999999886421 1225
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEE
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVL 275 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~l 275 (678)
++++|||+|||+||.|+++.+..+....++++..++||.....+...+..+++|+|+||++|.+++... .+.++++.+|
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~-~~~l~~v~~l 274 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH-DIELDNVSVL 274 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccchheeEE
Confidence 679999999999999999999999888888999999998888887788889999999999999999875 6779999999
Q ss_pred EEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhh
Q 005773 276 ILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV 355 (678)
Q Consensus 276 VvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 355 (678)
||||||+|+++||...+..++..++ .+|+++||||+++.+..+...++.+++.+...........+.+.++.+.. .
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~---~ 350 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET---K 350 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc---h
Confidence 9999999999999999999988885 68999999999999999999999988888776554444445555554432 2
Q ss_pred hHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhh-cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccc
Q 005773 356 NQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 432 (678)
Q Consensus 356 ~~~~~l~~~~~~--~~~~~vLVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~ 432 (678)
.+...+..++.. ....++||||+++..++.++..|.. .++.+..+||++++.+|..+++.|++|+.+|||||++++|
T Consensus 351 ~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~r 430 (518)
T PLN00206 351 QKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGR 430 (518)
T ss_pred hHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhc
Confidence 233344444432 2346899999999999999999975 6899999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHh
Q 005773 433 GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (678)
Q Consensus 433 GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~ 489 (678)
|||+|+|++|||||+|.++.+|+||+|||||.|..|.+++|++..+...+..+.+.+
T Consensus 431 GiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l 487 (518)
T PLN00206 431 GVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALL 487 (518)
T ss_pred cCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998887777776544
No 23
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-59 Score=470.08 Aligned_cols=362 Identities=35% Similarity=0.551 Sum_probs=319.1
Q ss_pred CcccCCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC---CCCC
Q 005773 121 SFHANSFME-LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPA 196 (678)
Q Consensus 121 ~~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~---~~~~ 196 (678)
+.+..+|++ +...+.+++.+.+.||.+|||||.++||.+|+|.|++..|.||+|||++|++|.+-++...+. ..++
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 445667754 567899999999999999999999999999999999999999999999999999888776543 3567
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEE
Q 005773 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (678)
Q Consensus 197 ~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lV 276 (678)
+.+|+++|||+|+.|+.-++.++ .+.+.+..+++|+.+...+...++.+.+|+|+||++|.++..+. .++|.++.+||
T Consensus 295 p~~lvl~ptreLalqie~e~~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n-~i~l~siTYlV 372 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN-VINLASITYLV 372 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC-eeeeeeeEEEE
Confidence 89999999999999998887776 46788999999999999999999999999999999999977764 68899999999
Q ss_pred EeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCC-CCCceeEEEEEechhhh
Q 005773 277 LDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR-PSTLTEEVVRIRRMREV 355 (678)
Q Consensus 277 vDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~-~~~l~~~~~~~~~~~~~ 355 (678)
+||||+|+++||...|..|+-.+.+.+|+++.|||+|+.+..++..++.+|+.+.+....-. ...+.|.++.. ...
T Consensus 373 lDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~---~d~ 449 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVT---TDS 449 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEec---ccH
Confidence 99999999999999999999999999999999999999999999999999988766443322 23445544322 234
Q ss_pred hHHHHHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccC
Q 005773 356 NQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (678)
Q Consensus 356 ~~~~~l~~~~~-~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl 434 (678)
.+......+.. -....++||||..+..|+.|..-|...|+..-.|||+-.|.+|..+++.|++|.++||||||+++|||
T Consensus 450 ~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGl 529 (629)
T KOG0336|consen 450 EKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGL 529 (629)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCC
Confidence 44444444443 34568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHH
Q 005773 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (678)
Q Consensus 435 Di~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~ 487 (678)
|+++|.||+|||+|.|++.|+||+||+||+|+.|.+++|++.+|..+...+.+
T Consensus 530 Dv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ 582 (629)
T KOG0336|consen 530 DVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQ 582 (629)
T ss_pred CchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877654
No 24
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-59 Score=487.30 Aligned_cols=363 Identities=37% Similarity=0.566 Sum_probs=324.1
Q ss_pred CcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCC-------
Q 005773 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR------- 193 (678)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~------- 193 (678)
+.+..+|.+-.+...+...++..||..|||+|+.+||.+..|+|+++||+||||||.+|++|++.+++.....
T Consensus 70 p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~ 149 (482)
T KOG0335|consen 70 PPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGG 149 (482)
T ss_pred CCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCC
Confidence 4445577777899999999999999999999999999999999999999999999999999999999876431
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCee
Q 005773 194 IPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273 (678)
Q Consensus 194 ~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~ 273 (678)
...|++||++|||+||.|+++..+++....++.++.++|+.+...+...+..++||+|+|||+|.+.+... .+.|..++
T Consensus 150 ~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g-~i~l~~~k 228 (482)
T KOG0335|consen 150 GVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG-KISLDNCK 228 (482)
T ss_pred CCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc-eeehhhCc
Confidence 12489999999999999999999999988999999999999998898999999999999999999988875 78899999
Q ss_pred EEEEeCCccccc-CChHHHHHHHHHHCCC----CccEEEEEeccChhHHHHHHHhcCC-CeEEecCCCCCCCCCceeEEE
Q 005773 274 VLILDEADRLLE-LGFSAEIHELVRLCPK----RRQTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTEEVV 347 (678)
Q Consensus 274 ~lVvDEah~ll~-~gf~~~i~~i~~~~~~----~~q~il~SATl~~~~~~l~~~~~~~-p~~~~~~~~~~~~~~l~~~~~ 347 (678)
++||||||+|++ +||.+.|..|+..... .+|+++||||.+..+..++..++.+ .+.+.+.........+.|.+.
T Consensus 229 ~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~ 308 (482)
T KOG0335|consen 229 FLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKIL 308 (482)
T ss_pred EEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEee
Confidence 999999999998 9999999999987754 6899999999999999999888876 667777666777788888888
Q ss_pred EEechhhhhHHHHHHHHhhccC----C-----ceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc
Q 005773 348 RIRRMREVNQEAVLLSLCSKTF----T-----SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418 (678)
Q Consensus 348 ~~~~~~~~~~~~~l~~~~~~~~----~-----~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~ 418 (678)
.+... .+...++.++.... . .+++|||.+++.+..+..+|...++++..+||.-++.+|.+++..|++
T Consensus 309 ~V~~~---~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~ 385 (482)
T KOG0335|consen 309 FVNEM---EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN 385 (482)
T ss_pred eecch---hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc
Confidence 88654 33344444443222 2 389999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHH
Q 005773 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (678)
Q Consensus 419 g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~ 487 (678)
|...|||||++++||||||+|+||||||+|.+..+|+||||||||.|+.|.++.|++..+....+.+.+
T Consensus 386 g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~ 454 (482)
T KOG0335|consen 386 GKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVE 454 (482)
T ss_pred CCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999877777666654
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.1e-57 Score=502.09 Aligned_cols=369 Identities=36% Similarity=0.610 Sum_probs=325.1
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCC----CCCeEE
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR----IPAIRV 199 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~----~~~~~v 199 (678)
...|.+++|++.++++|.++||..|+++|.++|+.++.|+|+|++++||||||++|++|+++.+...+.. ...+++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 4678999999999999999999999999999999999999999999999999999999999998765421 125789
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh-cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEe
Q 005773 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (678)
Q Consensus 200 LIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l-~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvD 278 (678)
|||+||++||.|+++.+..+....++.+..++|+.+...+...+ ...++|+|+||++|+.++... ...++++++||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~-~~~l~~l~~lViD 244 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG-EVHLDMVEVMVLD 244 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC-CcccccCceEEec
Confidence 99999999999999999999988899999999998777665555 456899999999999988764 5678999999999
Q ss_pred CCcccccCChHHHHHHHHHHCCC--CccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhh
Q 005773 279 EADRLLELGFSAEIHELVRLCPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (678)
Q Consensus 279 Eah~ll~~gf~~~i~~i~~~~~~--~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (678)
|||++++++|...+..++..++. .+|++++|||++.++..++..++.+|..+.+.........+.+.+..+. ...
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~ 321 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVA---GSD 321 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEec---chh
Confidence 99999999999999999998865 5799999999999999999999999988776554444444555554443 234
Q ss_pred HHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCC
Q 005773 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (678)
Q Consensus 357 ~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi 436 (678)
+...+..++......++||||+++..++.+..+|...++.+..+||++++.+|..+++.|++|+++|||||+++++||||
T Consensus 322 k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 322 KYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 45556666666666799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccchh
Q 005773 437 IGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 496 (678)
Q Consensus 437 ~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~ 496 (678)
++|++||+|++|.++.+|+||+||+||.|+.|.+++|+++.|..++..+.+.++..+...
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~ 461 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCE 461 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCccc
Confidence 999999999999999999999999999999999999999999989999998888776533
No 26
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.5e-59 Score=466.49 Aligned_cols=362 Identities=36% Similarity=0.606 Sum_probs=317.8
Q ss_pred CCCCCCCCCCcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCC
Q 005773 112 SFFAPADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 191 (678)
Q Consensus 112 ~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~ 191 (678)
+.....+..+.+..+|.++.++..+++.|++.|+.+|||||.+.||.+++|+|.|..|-||||||++|.||++-..+...
T Consensus 157 ~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE 236 (610)
T KOG0341|consen 157 HILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQE 236 (610)
T ss_pred eEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHH
Confidence 33445566788899999999999999999999999999999999999999999999999999999999999987666432
Q ss_pred C-----CCCCeEEEEEcCcHHHHHHHHHHHHHHhhc------CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHH
Q 005773 192 K-----RIPAIRVLILTPTRELAVQVHSMIEKIAQF------TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDH 260 (678)
Q Consensus 192 ~-----~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~------~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~ 260 (678)
- +..+|-.|||||+|+||.|.++.+..++.. +.++.+++.||.+...+...++.+.+|+|+|||||.++
T Consensus 237 ~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~Dm 316 (610)
T KOG0341|consen 237 MMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDM 316 (610)
T ss_pred hcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHH
Confidence 1 234778899999999999999999887653 45788999999999999999999999999999999999
Q ss_pred HhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCC
Q 005773 261 LRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPS 340 (678)
Q Consensus 261 l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~ 340 (678)
|... ..+|.-.+++++||||+|+++||...+..++.++...+|+++||||||..+..+++..+.+|+.+.+.......-
T Consensus 317 L~KK-~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsl 395 (610)
T KOG0341|consen 317 LAKK-IMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASL 395 (610)
T ss_pred HHHh-hccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccch
Confidence 9874 677888899999999999999999999999999999999999999999999999999999999998865544333
Q ss_pred CceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC
Q 005773 341 TLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420 (678)
Q Consensus 341 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~ 420 (678)
.+.|.+ .......+..+++. |......++||||-.+.+++.+..||-..|+.+..|||+-+|++|...++.|+.|+
T Consensus 396 dViQev---EyVkqEaKiVylLe-CLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gk 471 (610)
T KOG0341|consen 396 DVIQEV---EYVKQEAKIVYLLE-CLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGK 471 (610)
T ss_pred hHHHHH---HHHHhhhhhhhHHH-HhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCC
Confidence 333221 11122223333333 33445679999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCc
Q 005773 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478 (678)
Q Consensus 421 ~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d 478 (678)
-+||||||+++.|||+|++.||||||+|..++.|+||+|||||.|+.|.+.+|++++.
T Consensus 472 KDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 472 KDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred CceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 9999999999999999999999999999999999999999999999999999999864
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-57 Score=466.03 Aligned_cols=364 Identities=37% Similarity=0.553 Sum_probs=331.2
Q ss_pred CcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC--CCCCeE
Q 005773 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAIR 198 (678)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~~~ 198 (678)
+.+.++|+.++++..|..++...-|.+|||+|.+++|.++.|+|++..|.||||||.+|+.|++-+++..+. ...+|-
T Consensus 219 ~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi 298 (731)
T KOG0339|consen 219 PRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPI 298 (731)
T ss_pred CCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCe
Confidence 446789999999999999999999999999999999999999999999999999999999999999987654 245788
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEe
Q 005773 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (678)
Q Consensus 199 vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvD 278 (678)
.||+||||+||.|++..+++|++..++++++++||.+...+...|..++.|||||||||++++... ..++.++++||||
T Consensus 299 ~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmK-atn~~rvS~LV~D 377 (731)
T KOG0339|consen 299 GVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMK-ATNLSRVSYLVLD 377 (731)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhh-cccceeeeEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999998764 6889999999999
Q ss_pred CCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHH
Q 005773 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358 (678)
Q Consensus 279 Eah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (678)
|||+|.++||...+..|...+.+.+|+|+||||++..+..+++.++..|+.+...........++|.+..+... ..+.
T Consensus 378 EadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~--~~Kl 455 (731)
T KOG0339|consen 378 EADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSE--EKKL 455 (731)
T ss_pred chhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCc--HHHH
Confidence 99999999999999999999999999999999999999999999999999988776666666777776655432 2333
Q ss_pred HH-HHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC
Q 005773 359 AV-LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (678)
Q Consensus 359 ~~-l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~ 437 (678)
.. +..+..-...+++|||+.-+..++.+...|...++++..+||++.|.+|.+++..|+.+...|||+||+++||+||+
T Consensus 456 ~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~ 535 (731)
T KOG0339|consen 456 NWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIP 535 (731)
T ss_pred HHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcc
Confidence 33 33344444568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHH
Q 005773 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (678)
Q Consensus 438 ~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~ 487 (678)
.+.+|||||+-.++..|.||+||+||+|..|.+|+|+++.|..+.-.+.+
T Consensus 536 ~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVn 585 (731)
T KOG0339|consen 536 SIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVN 585 (731)
T ss_pred ccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHH
Confidence 99999999999999999999999999999999999999999876655544
No 28
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-56 Score=458.13 Aligned_cols=367 Identities=34% Similarity=0.537 Sum_probs=312.9
Q ss_pred CcccCCcccCCCCHHHH----------HHHHHcCCCCCcHHHHHHHHHHhc---------CCCEEEEcCCCchhhhhhhh
Q 005773 121 SFHANSFMELNLSRPLL----------RACEALGYSKPTPIQAACIPLALT---------GRDICGSAITGSGKTAAFAL 181 (678)
Q Consensus 121 ~~~~~~f~~l~l~~~l~----------~~l~~~g~~~~~~iQ~~~i~~ll~---------g~dvl~~a~TGsGKT~~~~l 181 (678)
..+...|+.++++..+. .++..+++++.+|+|..++|+++. ++|+++.||||||||++|.|
T Consensus 123 ~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~i 202 (620)
T KOG0350|consen 123 NNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVI 202 (620)
T ss_pred CCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehh
Confidence 33444567777665443 448899999999999999999964 58999999999999999999
Q ss_pred chhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCC-C----CEEEECchH
Q 005773 182 PTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM-P----DIVVATPGR 256 (678)
Q Consensus 182 ~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~-~----dIiv~Tp~~ 256 (678)
|+++.|..++- +..++|||+||++|+.|++..|..++...++.|+.+.|..+.......|.+. + ||+|+||||
T Consensus 203 PIVQ~L~~R~v--~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGR 280 (620)
T KOG0350|consen 203 PIVQLLSSRPV--KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGR 280 (620)
T ss_pred HHHHHHccCCc--cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchH
Confidence 99999987764 3689999999999999999999999999999999999999988777776553 3 899999999
Q ss_pred HHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCC----------------------------------CC
Q 005773 257 MIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP----------------------------------KR 302 (678)
Q Consensus 257 L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~----------------------------------~~ 302 (678)
|.+||.+.+.|.|.+++++||||||+|++..|..|+-.++..+. +.
T Consensus 281 LVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~ 360 (620)
T KOG0350|consen 281 LVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPP 360 (620)
T ss_pred HHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCch
Confidence 99999999999999999999999999999888888876664432 12
Q ss_pred ccEEEEEeccChhHHHHHHHhcCCCeEEecC----CCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEec
Q 005773 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSAD----PSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSG 378 (678)
Q Consensus 303 ~q~il~SATl~~~~~~l~~~~~~~p~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~ 378 (678)
.+.+++|||++.+-..+..+-++.|....+. .....|..+.+..+... ...+...+..++......++|+|++
T Consensus 361 l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~---~~~kpl~~~~lI~~~k~~r~lcf~~ 437 (620)
T KOG0350|consen 361 LWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTE---PKFKPLAVYALITSNKLNRTLCFVN 437 (620)
T ss_pred hHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecc---cccchHhHHHHHHHhhcceEEEEec
Confidence 3578999999999999999999998554443 33445666666655543 3355666777777777889999999
Q ss_pred cHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHH
Q 005773 379 TKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSY 454 (678)
Q Consensus 379 s~~~~~~l~~~L~----~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~y 454 (678)
+...+.++...|+ ..++++..+.|.++...|...+++|+.|.+.||||||+++||+|+.+|+.|||||+|.+..+|
T Consensus 438 S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~kty 517 (620)
T KOG0350|consen 438 SVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTY 517 (620)
T ss_pred chHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHH
Confidence 9999999999887 336788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCc
Q 005773 455 VHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSK 492 (678)
Q Consensus 455 iQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~ 492 (678)
+||+|||||+|+.|.||++++..+...+..+.+..+..
T Consensus 518 VHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~~ 555 (620)
T KOG0350|consen 518 VHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNLW 555 (620)
T ss_pred HHhhcccccccCCceEEEeeccccchHHHHHHHHhccc
Confidence 99999999999999999999999887777776665543
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.9e-55 Score=477.23 Aligned_cols=366 Identities=33% Similarity=0.530 Sum_probs=322.1
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
..+|.++++++.+.++|..+||..|+|+|.++|+.++.|+|+++++|||||||++|++|+++.+... ..++++|||+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~---~~~~~~lil~ 103 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD---LNACQALILA 103 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC---CCCceEEEEC
Confidence 4789999999999999999999999999999999999999999999999999999999999887432 2356899999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccc
Q 005773 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (678)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (678)
||++|+.|+.+.+..++...++.+..++|+.........+..+++|+|+||++|.+.+... ...++++++|||||||++
T Consensus 104 Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~l~~i~lvViDEah~~ 182 (401)
T PTZ00424 104 PTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR-HLRVDDLKLFILDEADEM 182 (401)
T ss_pred CCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC-CcccccccEEEEecHHHH
Confidence 9999999999999999888888888889998877777778888999999999999988764 467899999999999999
Q ss_pred ccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHH
Q 005773 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (678)
Q Consensus 284 l~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 363 (678)
++++|...+..++..++...|++++|||+++.+..+...++..|..+.+.........+.+.++.+.. .......+..
T Consensus 183 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 260 (401)
T PTZ00424 183 LSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEK--EEWKFDTLCD 260 (401)
T ss_pred HhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecCh--HHHHHHHHHH
Confidence 99999999999999999999999999999999999888888888776654433334455555444432 2233444555
Q ss_pred HhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEE
Q 005773 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (678)
Q Consensus 364 ~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI 443 (678)
+.......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||
T Consensus 261 ~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI 340 (401)
T PTZ00424 261 LYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI 340 (401)
T ss_pred HHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE
Confidence 55555567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccch
Q 005773 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (678)
Q Consensus 444 ~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~ 495 (678)
+|++|.+...|+||+||+||.|+.|.|++|+++.+...++.+.+.....+..
T Consensus 341 ~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~ 392 (401)
T PTZ00424 341 NYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEE 392 (401)
T ss_pred EECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccc
Confidence 9999999999999999999999999999999999999999998877665543
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-55 Score=434.83 Aligned_cols=373 Identities=31% Similarity=0.488 Sum_probs=328.0
Q ss_pred CCCCCcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchhhhhhhhchhHHHhcCCCCC
Q 005773 117 ADGASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRI 194 (678)
Q Consensus 117 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g--~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~ 194 (678)
.+...++..+|++|+|+|.|++++..++|.+|+.||..++|.++.. +|+|..+..|+|||.||.|.+|.++.-. .
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~---~ 158 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD---V 158 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc---c
Confidence 3445677899999999999999999999999999999999999986 7999999999999999999999887443 3
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeE
Q 005773 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 274 (678)
Q Consensus 195 ~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~ 274 (678)
.-|.++.|+|||+||.|+.+++.+.++++++.+.+...+.....-. .-..+|+|+|||.+.+++.....+.+..+++
T Consensus 159 ~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~---~i~eqIviGTPGtv~Dlm~klk~id~~kikv 235 (477)
T KOG0332|consen 159 VVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGN---KLTEQIVIGTPGTVLDLMLKLKCIDLEKIKV 235 (477)
T ss_pred cCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCC---cchhheeeCCCccHHHHHHHHHhhChhhceE
Confidence 4677899999999999999999999999988888777665211110 1124799999999999998766788999999
Q ss_pred EEEeCCccccc-CChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechh
Q 005773 275 LILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 353 (678)
Q Consensus 275 lVvDEah~ll~-~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (678)
+|+||||.|++ .||.+.-..|.+.+|++.|+|+||||....+..++...+.+|..+.+.........+.|.++.+. .
T Consensus 236 fVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~--~ 313 (477)
T KOG0332|consen 236 FVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCA--C 313 (477)
T ss_pred EEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeecc--c
Confidence 99999999985 78999999999999999999999999999999999999999988887766666777888777665 4
Q ss_pred hhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccccccc
Q 005773 354 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (678)
Q Consensus 354 ~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~G 433 (678)
...+...+..+.....-+..||||.|+..+.+|+..|...|..+..+||+|...+|..++..|+.|..+|||+|++++||
T Consensus 314 ~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARG 393 (477)
T KOG0332|consen 314 RDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARG 393 (477)
T ss_pred hhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcc
Confidence 46677777777766666889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCC------ChhHHHHHHhhcccCCCceEEEEEeeCC-cHHHHHHHHHHhcCccchhh
Q 005773 434 LDIIGVQTVINYACPR------DLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKLKSRI 497 (678)
Q Consensus 434 lDi~~v~~VI~~d~p~------s~~~yiQr~GRagR~g~~G~~i~l~~~~-d~~~l~~i~~~~~~~~~~~~ 497 (678)
||++.|+.|||||+|. +++.|+||+|||||.|+.|.++.|+... ...++..|++.++..++...
T Consensus 394 iDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~ 464 (477)
T KOG0332|consen 394 IDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLD 464 (477)
T ss_pred cccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecC
Confidence 9999999999999997 7899999999999999999999999764 57788899998877666533
No 31
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-55 Score=443.85 Aligned_cols=365 Identities=39% Similarity=0.583 Sum_probs=336.0
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
..+|.++||+..+++++...||..|||+|++.||.++.|+|++..+.||||||.+|++|++++|.... .++.++||++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--~~g~Ralils 97 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--QTGLRALILS 97 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--ccccceeecc
Confidence 46899999999999999999999999999999999999999999999999999999999999997765 3578899999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccc
Q 005773 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (678)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (678)
|||+|+.|+.+.++.+++++++++.+++||.+...++..+..++|||++||+++....... .+.|+.+++||+||||+|
T Consensus 98 ptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem-~l~l~sveyVVfdEadrl 176 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM-TLTLSSVEYVVFDEADRL 176 (529)
T ss_pred CcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe-eccccceeeeeehhhhHH
Confidence 9999999999999999999999999999999999999999999999999999997655543 578999999999999999
Q ss_pred ccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHH
Q 005773 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (678)
Q Consensus 284 l~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 363 (678)
..+||.+++.+++..+|..+|+++||||+|..+.++.+..+.+|+.+..+........+...+..++ ...+...|+.
T Consensus 177 femgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~---~a~K~aaLl~ 253 (529)
T KOG0337|consen 177 FEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVR---KAEKEAALLS 253 (529)
T ss_pred HhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeec---cHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887766666666666666554 4566667776
Q ss_pred Hhhcc-CCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEE
Q 005773 364 LCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (678)
Q Consensus 364 ~~~~~-~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (678)
++... ....++||++|+..++.+...|...|+.+..++|.|++.-|...+..|+.++..+||.|++++||+|||..+.|
T Consensus 254 il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnv 333 (529)
T KOG0337|consen 254 ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNV 333 (529)
T ss_pred HHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccc
Confidence 66533 34689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccc
Q 005773 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (678)
Q Consensus 443 I~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~ 494 (678)
||||.|....-|+||+||++|+|+.|++|.++...+..++-.+...++..+.
T Consensus 334 inyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~ 385 (529)
T KOG0337|consen 334 INYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLI 385 (529)
T ss_pred ccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCcee
Confidence 9999999999999999999999999999999999999999999888776554
No 32
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-54 Score=476.11 Aligned_cols=377 Identities=37% Similarity=0.537 Sum_probs=331.9
Q ss_pred CCCcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC--CCCC
Q 005773 119 GASFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPA 196 (678)
Q Consensus 119 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~ 196 (678)
..+.+..+|.+.|++..++..++++||.+|+|||.+|||+|+.|+|||..|.||||||++|+||++.++...+. ...+
T Consensus 359 ~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdG 438 (997)
T KOG0334|consen 359 ECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDG 438 (997)
T ss_pred CCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCC
Confidence 34557889999999999999999999999999999999999999999999999999999999999987765442 2458
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccC--ccCCCCeeE
Q 005773 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM--SVDLDDLAV 274 (678)
Q Consensus 197 ~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~--~~~l~~i~~ 274 (678)
|.+||++|||+||.|+++++..|+...++++++++|+.....+...++.++.|+|+|||++++.+..+. ..++.++.+
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~ 518 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTY 518 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccce
Confidence 999999999999999999999999999999999999999999999999999999999999999886542 234666679
Q ss_pred EEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhh
Q 005773 275 LILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMRE 354 (678)
Q Consensus 275 lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~ 354 (678)
||+||||+|+++||.+.+..|++.+++.+|+++||||++..+..+....++.|+.+.+.........+.+.+..+. ..
T Consensus 519 lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~--~e 596 (997)
T KOG0334|consen 519 LVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCA--IE 596 (997)
T ss_pred eeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEec--Cc
Confidence 9999999999999999999999999999999999999999999999999999999887765555555665554443 13
Q ss_pred hhHHHHHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccccccc
Q 005773 355 VNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (678)
Q Consensus 355 ~~~~~~l~~~~~-~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~G 433 (678)
..+...|..++. ....+++||||.....|..+..-|...|+.+..|||+.++.+|..+++.|++|.+.+||||++++||
T Consensus 597 ~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarG 676 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARG 676 (997)
T ss_pred hHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcc
Confidence 445555555443 3347899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccchhhhh
Q 005773 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVA 499 (678)
Q Consensus 434 lDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~ 499 (678)
||+..+.+||||++|..+..|+||+|||||+|+.|.|++|+++.+..+.-.|.+.+ .+....++
T Consensus 677 Ldv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al--~~~~~~~P 740 (997)
T KOG0334|consen 677 LDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL--ELSKQPVP 740 (997)
T ss_pred cccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH--HhccCCCc
Confidence 99999999999999999999999999999999999999999997777777777665 33334444
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-54 Score=430.46 Aligned_cols=364 Identities=32% Similarity=0.536 Sum_probs=333.1
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
..+|++++|++.|++.+...||.+|+.||+.||+++..|.|+++.+.+|+|||.+|.+++++.+.... ....+|+++
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~---ke~qalila 101 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV---KETQALILA 101 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcch---HHHHHHHhc
Confidence 35899999999999999999999999999999999999999999999999999999999999874332 345789999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhc-CCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc
Q 005773 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (678)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (678)
|||+||.|+..+...+....+.++..+.||.....+...+. ..++|+++|||++.+.+... .+....++++|+||||.
T Consensus 102 PtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 102 PTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADE 180 (397)
T ss_pred chHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHh
Confidence 99999999999999999999999999999988775555444 46899999999999999876 67788899999999999
Q ss_pred cccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHH
Q 005773 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (678)
Q Consensus 283 ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 362 (678)
|+..||.+.+..+.+.+|...|++++|||++.++..+.+.++.+|+.+.+.........+.|+++.+.... +...+.
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~---k~~~l~ 257 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE---KLDTLC 257 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc---cccHHH
Confidence 99999999999999999999999999999999999999999999999998877777778888888876543 555666
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEE
Q 005773 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (678)
Q Consensus 363 ~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (678)
.++. .-...+|||||+..+..+...|...++.+..+||.|.+.+|..++..|+.|..+|||.|++++||+|+..+..|
T Consensus 258 dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 258 DLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 6665 34678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccchh
Q 005773 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 496 (678)
Q Consensus 443 I~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~ 496 (678)
|||++|.+..+|+||+||+||.|++|.++.+++..+...++.+.+.+...+...
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~ 389 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEEL 389 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceec
Confidence 999999999999999999999999999999999999999999998887776653
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.3e-51 Score=432.46 Aligned_cols=354 Identities=30% Similarity=0.473 Sum_probs=319.1
Q ss_pred CcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEE
Q 005773 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200 (678)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vL 200 (678)
+.....|++|.|.++++..|+..+|..||++|..|||.++.+-|+|+.+..|+|||++|.+.+++.+..+. ..+.++
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~---~~~q~~ 97 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS---SHIQKV 97 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc---CcceeE
Confidence 34456799999999999999999999999999999999999999999999999999999999999886553 457789
Q ss_pred EEcCcHHHHHHHHHHHHHHhh-cCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 005773 201 ILTPTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (678)
Q Consensus 201 Il~Ptr~La~Q~~~~~~~l~~-~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (678)
||+|||++|.|+.+.+..++. +.+.+|.+++||.........++ .++|+|+|||||..++... .++.++++++|+||
T Consensus 98 Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~-~~n~s~vrlfVLDE 175 (980)
T KOG4284|consen 98 IVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELG-AMNMSHVRLFVLDE 175 (980)
T ss_pred EEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhc-CCCccceeEEEecc
Confidence 999999999999999999986 57999999999988776665554 4689999999999988875 78899999999999
Q ss_pred Cccccc-CChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhh--
Q 005773 280 ADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN-- 356 (678)
Q Consensus 280 ah~ll~-~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-- 356 (678)
||.|++ ..|...+..|++.+|..+|+++||||.+..+..++..++.+|..+..........++.|+++.........
T Consensus 176 ADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsvee 255 (980)
T KOG4284|consen 176 ADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEE 255 (980)
T ss_pred HHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHH
Confidence 999998 56999999999999999999999999999999999999999999998887777788888887766543222
Q ss_pred ---HHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccccccc
Q 005773 357 ---QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (678)
Q Consensus 357 ---~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~G 433 (678)
+...|-.+++..+-...||||+....|+-++.+|...|+.|.++.|.|+|.+|..++..++.-..+|||+||+.+||
T Consensus 256 mrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRG 335 (980)
T KOG4284|consen 256 MRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARG 335 (980)
T ss_pred HHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhcc
Confidence 33445556666666789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcH
Q 005773 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (678)
Q Consensus 434 lDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~ 479 (678)
||-++|++|||.|+|.+..+|.||||||||.|..|.+++|+.....
T Consensus 336 IDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 336 IDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred CCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999999999987654
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.3e-50 Score=462.81 Aligned_cols=357 Identities=19% Similarity=0.234 Sum_probs=279.3
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 005773 131 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (678)
Q Consensus 131 ~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~ 210 (678)
.|++.+.++|..+||..|+++|.++||.++.|+|+++++|||||||++|++|+++.+... +++++|||+|||+||.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~----~~~~aL~l~PtraLa~ 95 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD----PRATALYLAPTKALAA 95 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC----CCcEEEEEcChHHHHH
Confidence 488999999999999999999999999999999999999999999999999999998753 3568999999999999
Q ss_pred HHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccC---ccCCCCeeEEEEeCCcccccCC
Q 005773 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM---SVDLDDLAVLILDEADRLLELG 287 (678)
Q Consensus 211 Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~---~~~l~~i~~lVvDEah~ll~~g 287 (678)
|++..+..+. ..++++..+.|+.+ ..+...+..+++|+|+||++|...+.... ...++++++|||||||.+...
T Consensus 96 q~~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~- 172 (742)
T TIGR03817 96 DQLRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV- 172 (742)
T ss_pred HHHHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc-
Confidence 9999999987 45788877777665 44455677789999999999875332211 123789999999999998763
Q ss_pred hHHHHHH-------HHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEec---------
Q 005773 288 FSAEIHE-------LVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR--------- 351 (678)
Q Consensus 288 f~~~i~~-------i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~--------- 351 (678)
|...+.. +....+..+|++++|||+++... +...++..|+.+.. ... .+....+..+....
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~-~~~-~~~~~~~~~~~~p~~~~~~~~~~ 249 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAVT-EDG-SPRGARTVALWEPPLTELTGENG 249 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEEC-CCC-CCcCceEEEEecCCccccccccc
Confidence 5444333 33345677899999999998754 56666777755432 211 22222222221111
Q ss_pred -----hhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc--------CCceeeccCCCCHHHHHHHHHHHhc
Q 005773 352 -----MREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--------ALKAAELHGNLTQAQRLEALELFRK 418 (678)
Q Consensus 352 -----~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~--------~~~~~~lhg~l~~~~R~~~l~~F~~ 418 (678)
.........+..++.. +.++||||+|+..++.++.+|... +..+..+||++++.+|..+++.|++
T Consensus 250 ~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~ 327 (742)
T TIGR03817 250 APVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD 327 (742)
T ss_pred cccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc
Confidence 0011233344444433 579999999999999999987653 5688899999999999999999999
Q ss_pred CCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEee--CCcHHHHHHHHHHhcCccchh
Q 005773 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT--DNDRSLLKAIAKRAGSKLKSR 496 (678)
Q Consensus 419 g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~--~~d~~~l~~i~~~~~~~~~~~ 496 (678)
|++++||||+++++||||+++++||||++|.++.+|+||+|||||.|+.|.+++++. +.|..++..+.+.+...+...
T Consensus 328 G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~ 407 (742)
T TIGR03817 328 GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEAT 407 (742)
T ss_pred CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999999999999999986 446667777776666666554
Q ss_pred hhh
Q 005773 497 IVA 499 (678)
Q Consensus 497 ~~~ 499 (678)
.++
T Consensus 408 ~~~ 410 (742)
T TIGR03817 408 VFD 410 (742)
T ss_pred eeC
Confidence 443
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.2e-49 Score=449.59 Aligned_cols=344 Identities=21% Similarity=0.265 Sum_probs=264.5
Q ss_pred Cccc--CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEE
Q 005773 126 SFME--LNLSRPLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (678)
Q Consensus 126 ~f~~--l~l~~~l~~~l~~-~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl 202 (678)
.|.. ++.+..+...++. +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|+|.. .+.+|||
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---------~GiTLVI 506 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---------PGITLVI 506 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------CCcEEEE
Confidence 4553 4455566655544 79999999999999999999999999999999999999999853 3468999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhc------CCCCEEEECchHHHH--H-HhccCcc-CCCCe
Q 005773 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR------SMPDIVVATPGRMID--H-LRNSMSV-DLDDL 272 (678)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~------~~~dIiv~Tp~~L~~--~-l~~~~~~-~l~~i 272 (678)
+|+++|+.++...+.. .++.+..+.++.....+...+. +.++|||+||++|.. . +.....+ ....+
T Consensus 507 SPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~L 582 (1195)
T PLN03137 507 SPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLL 582 (1195)
T ss_pred eCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccc
Confidence 9999998744333333 4788899999988766654432 568999999999852 1 2111111 23458
Q ss_pred eEEEEeCCcccccCC--hHHHHHHH--HHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEE
Q 005773 273 AVLILDEADRLLELG--FSAEIHEL--VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR 348 (678)
Q Consensus 273 ~~lVvDEah~ll~~g--f~~~i~~i--~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~ 348 (678)
.+|||||||++++|| |+..+..+ +....+..|+++||||+++.+...+...+.......+.....++ .+...+
T Consensus 583 slIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~Rp-NL~y~V-- 659 (1195)
T PLN03137 583 ARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRP-NLWYSV-- 659 (1195)
T ss_pred ceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCcc-ceEEEE--
Confidence 899999999999999 66655543 33334568899999999999888666555433222222233333 232211
Q ss_pred EechhhhhHHHHHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEc
Q 005773 349 IRRMREVNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 427 (678)
Q Consensus 349 ~~~~~~~~~~~~l~~~~~-~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT 427 (678)
+.. .. .....+..++. ...+..+||||.|+..++.++..|...|+.+..|||+|++.+|..+++.|..|+++|||||
T Consensus 660 v~k-~k-k~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVAT 737 (1195)
T PLN03137 660 VPK-TK-KCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICAT 737 (1195)
T ss_pred ecc-ch-hHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 111 11 11122333333 3345688999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHH
Q 005773 428 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (678)
Q Consensus 428 ~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~ 487 (678)
+++++|||+|+|++||||++|.++..|+||+|||||.|.+|.|++|++..|...++.+..
T Consensus 738 dAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 738 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred chhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988877776654
No 37
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-49 Score=417.41 Aligned_cols=367 Identities=35% Similarity=0.484 Sum_probs=312.5
Q ss_pred CcccCCccc----CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCC--CCC
Q 005773 121 SFHANSFME----LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP--KRI 194 (678)
Q Consensus 121 ~~~~~~f~~----l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~--~~~ 194 (678)
+....+|.+ ..+++.++..+...||..|+|+|.++||.++.++|++.|+|||||||++|.+|++.+|.... ...
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~ 207 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHK 207 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCc
Confidence 444556665 56889999999999999999999999999999999999999999999999999999987644 224
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHh--hcCCceeEEEecCCChHHHH-HHhcCCCCEEEECchHHHHHHhccC-ccCCC
Q 005773 195 PAIRVLILTPTRELAVQVHSMIEKIA--QFTDIRCCLVVGGLSTKMQE-TALRSMPDIVVATPGRMIDHLRNSM-SVDLD 270 (678)
Q Consensus 195 ~~~~vLIl~Ptr~La~Q~~~~~~~l~--~~~~~~v~~~~g~~~~~~~~-~~l~~~~dIiv~Tp~~L~~~l~~~~-~~~l~ 270 (678)
.+.+++|+.|||+||.|++..+.++. ..++..+..+.......... ......++|+|.||-++..++.... .+.++
T Consensus 208 ~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~ 287 (593)
T KOG0344|consen 208 VGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLS 287 (593)
T ss_pred cceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhh
Confidence 57889999999999999999999998 55555554444332222211 1122347899999999999987642 36799
Q ss_pred CeeEEEEeCCcccccC-ChHHHHHHHHHHCC-CCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEE
Q 005773 271 DLAVLILDEADRLLEL-GFSAEIHELVRLCP-KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR 348 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~-gf~~~i~~i~~~~~-~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~ 348 (678)
.+.++|+||||.+.+. +|..++-.|+..|. +...+-+||||++.++.+++......++.+.+.........+.|..+.
T Consensus 288 ~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF 367 (593)
T KOG0344|consen 288 KVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVF 367 (593)
T ss_pred eeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhhee
Confidence 9999999999999988 89999988887764 456788999999999999999999999888876655555566666665
Q ss_pred EechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHH-hhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEc
Q 005773 349 IRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF-GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 427 (678)
Q Consensus 349 ~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L-~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT 427 (678)
+. ....+...+..++......++|||+.+++.+..|...| ...++++..+||..++.+|..+++.|+.|++.|||||
T Consensus 368 ~g--se~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT 445 (593)
T KOG0344|consen 368 CG--SEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT 445 (593)
T ss_pred ee--cchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEeh
Confidence 54 34566777777888888999999999999999999999 6779999999999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHh
Q 005773 428 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (678)
Q Consensus 428 ~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~ 489 (678)
++++||+|+.||++|||||.|.+..+|+||+||+||+|+.|.+|+||++.|...++.|.+..
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988887653
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.1e-48 Score=430.90 Aligned_cols=326 Identities=22% Similarity=0.308 Sum_probs=255.6
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 005773 141 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (678)
Q Consensus 141 ~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 220 (678)
..+||..|+|+|.++|+.++.|+|+++.+|||||||++|++|++.. .+.+|||+||++|+.|++..+..
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~---------~~~~lVi~P~~~L~~dq~~~l~~-- 73 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS---------DGITLVISPLISLMEDQVLQLKA-- 73 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc---------CCcEEEEecHHHHHHHHHHHHHH--
Confidence 3579999999999999999999999999999999999999999842 34689999999999998887765
Q ss_pred hcCCceeEEEecCCChHHHHH----HhcCCCCEEEECchHHHHHHhccCcc-CCCCeeEEEEeCCcccccCC--hHHHHH
Q 005773 221 QFTDIRCCLVVGGLSTKMQET----ALRSMPDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLLELG--FSAEIH 293 (678)
Q Consensus 221 ~~~~~~v~~~~g~~~~~~~~~----~l~~~~dIiv~Tp~~L~~~l~~~~~~-~l~~i~~lVvDEah~ll~~g--f~~~i~ 293 (678)
.++.+..+.++........ ...+.++|+++||+++.....-...+ ...++++|||||||++++|| |...+.
T Consensus 74 --~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~ 151 (470)
T TIGR00614 74 --SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYK 151 (470)
T ss_pred --cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHH
Confidence 3677787777766553322 22445899999999975432110012 46789999999999999998 455544
Q ss_pred HH---HHHCCCCccEEEEEeccChhHHHHHHHhc--CCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhh-c
Q 005773 294 EL---VRLCPKRRQTMLFSATLTEDVDELIKLSL--TKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS-K 367 (678)
Q Consensus 294 ~i---~~~~~~~~q~il~SATl~~~~~~l~~~~~--~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~ 367 (678)
.+ ...+ +..|++++|||+++.+...+...+ .+|..+.. ...++ .+. +.+..... .....+..++. .
T Consensus 152 ~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~--s~~r~-nl~---~~v~~~~~-~~~~~l~~~l~~~ 223 (470)
T TIGR00614 152 ALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCT--SFDRP-NLY---YEVRRKTP-KILEDLLRFIRKE 223 (470)
T ss_pred HHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC--CCCCC-CcE---EEEEeCCc-cHHHHHHHHHHHh
Confidence 43 3344 467899999999998876655443 34544433 22222 222 12211111 12222333333 4
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCC
Q 005773 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447 (678)
Q Consensus 368 ~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~ 447 (678)
..+..+||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||||++
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~ 303 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL 303 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC
Confidence 44566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHH
Q 005773 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (678)
Q Consensus 448 p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~ 487 (678)
|.++..|+||+|||||.|.+|.|++|+++.|...++.+..
T Consensus 304 P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 304 PKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 9999999999999999999999999999999888777654
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.8e-46 Score=425.96 Aligned_cols=330 Identities=20% Similarity=0.278 Sum_probs=257.6
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHH
Q 005773 135 PLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213 (678)
Q Consensus 135 ~l~~~l~~-~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~ 213 (678)
.....|+. +||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.. .+.+|||+|+++|+.|+.
T Consensus 12 ~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------~g~tlVisPl~sL~~dqv 82 (607)
T PRK11057 12 LAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------DGLTLVVSPLISLMKDQV 82 (607)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------CCCEEEEecHHHHHHHHH
Confidence 33444433 79999999999999999999999999999999999999999843 346899999999999988
Q ss_pred HHHHHHhhcCCceeEEEecCCChHHHHHH----hcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCC--
Q 005773 214 SMIEKIAQFTDIRCCLVVGGLSTKMQETA----LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-- 287 (678)
Q Consensus 214 ~~~~~l~~~~~~~v~~~~g~~~~~~~~~~----l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g-- 287 (678)
+.+..+ ++.+..+.++......... ..+..+|+++||++|....... .+...++++|||||||++++||
T Consensus 83 ~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~-~l~~~~l~~iVIDEaH~i~~~G~~ 157 (607)
T PRK11057 83 DQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE-HLAHWNPALLAVDEAHCISQWGHD 157 (607)
T ss_pred HHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH-HHhhCCCCEEEEeCccccccccCc
Confidence 887753 6777777777665544322 2345789999999986321111 2334578999999999999998
Q ss_pred hHHHHHH---HHHHCCCCccEEEEEeccChhHHHHHHHh--cCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHH
Q 005773 288 FSAEIHE---LVRLCPKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (678)
Q Consensus 288 f~~~i~~---i~~~~~~~~q~il~SATl~~~~~~l~~~~--~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 362 (678)
|...+.. +...+ +..+++++|||+++.+...+... +..|..... ...++ ++...+ ... ......+.
T Consensus 158 fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~--~~~r~-nl~~~v--~~~---~~~~~~l~ 228 (607)
T PRK11057 158 FRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS--SFDRP-NIRYTL--VEK---FKPLDQLM 228 (607)
T ss_pred ccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC--CCCCC-cceeee--eec---cchHHHHH
Confidence 4444433 33444 46889999999998876654433 344544332 22222 222111 111 12223344
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEE
Q 005773 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (678)
Q Consensus 363 ~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (678)
.++....+.++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|+.|+.+|||||+++++|||+|+|++|
T Consensus 229 ~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~V 308 (607)
T PRK11057 229 RYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFV 308 (607)
T ss_pred HHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEE
Confidence 45555567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHH
Q 005773 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (678)
Q Consensus 443 I~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~ 487 (678)
|||++|.+...|+||+|||||.|.+|.|++|+++.|...++.+..
T Consensus 309 I~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~ 353 (607)
T PRK11057 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (607)
T ss_pred EEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999877776654
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=9.5e-46 Score=421.29 Aligned_cols=324 Identities=24% Similarity=0.341 Sum_probs=259.5
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 142 ~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
.+||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. .+.++||+|+++|+.|++..+..+
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---------~g~~lVisPl~sL~~dq~~~l~~~-- 76 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---------KGLTVVISPLISLMKDQVDQLRAA-- 76 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHHHHc--
Confidence 389999999999999999999999999999999999999999842 345899999999999988887763
Q ss_pred cCCceeEEEecCCChHHHHH----HhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCC--hHHHHHHH
Q 005773 222 FTDIRCCLVVGGLSTKMQET----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--FSAEIHEL 295 (678)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~----~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g--f~~~i~~i 295 (678)
++.+..+.++.+...... ...+..+|+++||++|....... .+...++++|||||||++++|| |+..+..+
T Consensus 77 --gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~-~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 77 --GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN-MLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH-HHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 678888888877655433 23456899999999986432221 2345689999999999999998 55544443
Q ss_pred ---HHHCCCCccEEEEEeccChhHHHHHHHhcC--CCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCC
Q 005773 296 ---VRLCPKRRQTMLFSATLTEDVDELIKLSLT--KPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFT 370 (678)
Q Consensus 296 ---~~~~~~~~q~il~SATl~~~~~~l~~~~~~--~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 370 (678)
...+|. .+++++|||+++.+...+...+. .+..+. ....++ .+..... . .......+..++....+
T Consensus 154 ~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~-nl~~~v~---~--~~~~~~~l~~~l~~~~~ 224 (591)
T TIGR01389 154 GSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFI--TSFDRP-NLRFSVV---K--KNNKQKFLLDYLKKHRG 224 (591)
T ss_pred HHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe--cCCCCC-CcEEEEE---e--CCCHHHHHHHHHHhcCC
Confidence 444544 45999999999988877666554 333322 222233 2221111 1 12233445555555557
Q ss_pred ceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCC
Q 005773 371 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 450 (678)
Q Consensus 371 ~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s 450 (678)
.++||||+|+..++.++.+|...++.+..+||+|+..+|..+++.|.+|+++|||||+++++|||+|+|++||+|++|.|
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s 304 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGN 304 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHH
Q 005773 451 LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (678)
Q Consensus 451 ~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~ 488 (678)
+..|+|++|||||.|.+|.|++|+++.|...++.+.+.
T Consensus 305 ~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~ 342 (591)
T TIGR01389 305 LESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQ 342 (591)
T ss_pred HHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhc
Confidence 99999999999999999999999999998887776653
No 41
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-46 Score=356.04 Aligned_cols=332 Identities=36% Similarity=0.609 Sum_probs=284.7
Q ss_pred CcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEE
Q 005773 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200 (678)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vL 200 (678)
..+.+.|.++-|+|.|++++...||..|+.+|.+|||.++.|-|+++.|..|.|||..|.+..|+.+--.+ ....||
T Consensus 38 ~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~---g~vsvl 114 (387)
T KOG0329|consen 38 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD---GQVSVL 114 (387)
T ss_pred EEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCC---CeEEEE
Confidence 34567799999999999999999999999999999999999999999999999999999999999884433 256799
Q ss_pred EEcCcHHHHHHHHHHHHHHhhc-CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 005773 201 ILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (678)
Q Consensus 201 Il~Ptr~La~Q~~~~~~~l~~~-~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (678)
++|.||+||.|+.+....|+++ +++++.+++||...+.....+++.|+|+|+|||+++.+.++. .+++.+++.+|+||
T Consensus 115 vmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k-~l~lk~vkhFvlDE 193 (387)
T KOG0329|consen 115 VMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR-SLNLKNVKHFVLDE 193 (387)
T ss_pred EEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc-cCchhhcceeehhh
Confidence 9999999999999999999887 579999999999999999999999999999999999988775 78999999999999
Q ss_pred Cccccc-CChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCC-CCCceeEEEEEechhhhhH
Q 005773 280 ADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR-PSTLTEEVVRIRRMREVNQ 357 (678)
Q Consensus 280 ah~ll~-~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ 357 (678)
||.|+. ...+..+.+|.+..|...|+++||||++.++....+.++.+|..+.++..... .-++.|.++... ...+
T Consensus 194 cdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLk---e~eK 270 (387)
T KOG0329|consen 194 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLK---ENEK 270 (387)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhh---hhhh
Confidence 999985 45788899999999999999999999999999999999999999888665432 235566665543 3444
Q ss_pred HHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC
Q 005773 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (678)
Q Consensus 358 ~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~ 437 (678)
...+..++....-..++||+.+... +. | +.+ ||||++++||+||.
T Consensus 271 Nrkl~dLLd~LeFNQVvIFvKsv~R------------------------------l~-f---~kr-~vat~lfgrgmdie 315 (387)
T KOG0329|consen 271 NRKLNDLLDVLEFNQVVIFVKSVQR------------------------------LS-F---QKR-LVATDLFGRGMDIE 315 (387)
T ss_pred hhhhhhhhhhhhhcceeEeeehhhh------------------------------hh-h---hhh-hHHhhhhccccCcc
Confidence 4555556655555789999998764 00 3 223 89999999999999
Q ss_pred CccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeC-CcHHHHHHHHHHhcCccc
Q 005773 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD-NDRSLLKAIAKRAGSKLK 494 (678)
Q Consensus 438 ~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~-~d~~~l~~i~~~~~~~~~ 494 (678)
.|+.|||||+|.++.+|+||+|||||.|..|.+++|++. ++...+..+..+....+.
T Consensus 316 rvNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~ 373 (387)
T KOG0329|consen 316 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIK 373 (387)
T ss_pred cceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHh
Confidence 999999999999999999999999999999999999975 567778878776654443
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.2e-43 Score=416.25 Aligned_cols=340 Identities=21% Similarity=0.286 Sum_probs=249.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCC---CCCeEEEEEcCcHHH
Q 005773 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR---IPAIRVLILTPTREL 208 (678)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~---~~~~~vLIl~Ptr~L 208 (678)
|++.+.+.+.. +|..|+|+|.++||.++.|+|++++||||||||++|.+|+++.+...... .+++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 66777777665 79999999999999999999999999999999999999999998753221 346789999999999
Q ss_pred HHHHHHHHHH-------Hh----hc-CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCc-cCCCCeeEE
Q 005773 209 AVQVHSMIEK-------IA----QF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-VDLDDLAVL 275 (678)
Q Consensus 209 a~Q~~~~~~~-------l~----~~-~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~-~~l~~i~~l 275 (678)
+.|+++.+.. ++ .. .++++...+|+.+.......+...++|+||||++|..++.+... ..+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876552 22 11 26788999999888887778888899999999999877754321 247899999
Q ss_pred EEeCCcccccCChHH----HHHHHHHHCCCCccEEEEEeccCh--hHHHHHHHhc----CCCeEEecCCCCCCCCCceeE
Q 005773 276 ILDEADRLLELGFSA----EIHELVRLCPKRRQTMLFSATLTE--DVDELIKLSL----TKPLRLSADPSAKRPSTLTEE 345 (678)
Q Consensus 276 VvDEah~ll~~gf~~----~i~~i~~~~~~~~q~il~SATl~~--~~~~l~~~~~----~~p~~~~~~~~~~~~~~l~~~ 345 (678)
||||+|.+.+..+.. .+..+....+...|+|++|||+++ .+...+.... ..++.+.. ........+...
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~-~~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVD-ARFVKPFDIKVI 255 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEc-cCCCccceEEEe
Confidence 999999998755433 334444555578899999999986 2222221111 11222211 111111111000
Q ss_pred -----EEEEechh-hhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc------CCceeeccCCCCHHHHHHHH
Q 005773 346 -----VVRIRRMR-EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA------ALKAAELHGNLTQAQRLEAL 413 (678)
Q Consensus 346 -----~~~~~~~~-~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~------~~~~~~lhg~l~~~~R~~~l 413 (678)
........ .......+..++. .+.++||||+|+..++.++..|... +..+..+||+|++.+|..++
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 00000000 0011112222222 2568999999999999999988762 46899999999999999999
Q ss_pred HHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccC-CCceEEEEEee
Q 005773 414 ELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA-GREGYAVTFVT 475 (678)
Q Consensus 414 ~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~-g~~G~~i~l~~ 475 (678)
+.|++|.++|||||+++++|||+|+|++||+|+.|.++..|+||+||+||. |..+.++++..
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 999999999999999999999999999999999999999999999999985 43344444443
No 43
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.1e-44 Score=415.86 Aligned_cols=334 Identities=24% Similarity=0.312 Sum_probs=256.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcC
Q 005773 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (678)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~-ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~P 204 (678)
.|++++|++.+++++...||..|+|+|.++++. ++.|+|+++++|||||||++|.+|+++.+. +++++|||+|
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~------~~~kal~i~P 75 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA------RGGKALYIVP 75 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh------cCCcEEEEeC
Confidence 478899999999999999999999999999998 778999999999999999999999999884 2457999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc
Q 005773 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (678)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (678)
|++||.|+++.+..+.. .++++..++|+...... ....++|+|+||+++..++++. ...+.++++|||||+|.+.
T Consensus 76 ~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~-~~~l~~v~lvViDE~H~l~ 150 (737)
T PRK02362 76 LRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNG-APWLDDITCVVVDEVHLID 150 (737)
T ss_pred hHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcC-hhhhhhcCEEEEECccccC
Confidence 99999999999998754 38899999988654432 2345799999999998888764 3457899999999999999
Q ss_pred cCChHHHHHHHHH---HCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEE-----E-------E
Q 005773 285 ELGFSAEIHELVR---LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-----R-------I 349 (678)
Q Consensus 285 ~~gf~~~i~~i~~---~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~-----~-------~ 349 (678)
+.++...+..++. ..+...|+|++|||+++. .++..+.-...+ ....+|..+..... . +
T Consensus 151 d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~-----~~~~rpv~l~~~v~~~~~~~~~~~~~~~ 224 (737)
T PRK02362 151 SANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELV-----DSEWRPIDLREGVFYGGAIHFDDSQREV 224 (737)
T ss_pred CCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcc-----cCCCCCCCCeeeEecCCeeccccccccC
Confidence 8777766665543 345678999999999752 233222111110 00111222211110 0 0
Q ss_pred echhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc------------------------------------
Q 005773 350 RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA------------------------------------ 393 (678)
Q Consensus 350 ~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~------------------------------------ 393 (678)
...........+...+ ..++++||||+|+..++.++..|...
T Consensus 225 ~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l 302 (737)
T PRK02362 225 EVPSKDDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCV 302 (737)
T ss_pred CCccchHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHH
Confidence 0000011111222222 24679999999999999888777532
Q ss_pred CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEE----cC-----CCCChhHHHHHHhhcccC
Q 005773 394 ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YA-----CPRDLTSYVHRVGRTARA 464 (678)
Q Consensus 394 ~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~----~d-----~p~s~~~yiQr~GRagR~ 464 (678)
...++++||+|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.++.+|+||+|||||.
T Consensus 303 ~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 303 AKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred HhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 136889999999999999999999999999999999999999999999997 76 688999999999999998
Q ss_pred CCc--eEEEEEeeCCc
Q 005773 465 GRE--GYAVTFVTDND 478 (678)
Q Consensus 465 g~~--G~~i~l~~~~d 478 (678)
|.. |.|++++...+
T Consensus 383 g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 383 GLDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCCCceEEEEecCch
Confidence 864 99999987653
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.2e-42 Score=392.27 Aligned_cols=316 Identities=21% Similarity=0.225 Sum_probs=241.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCC-CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEE-EcCcHHHHHHHHHHHHHHh
Q 005773 143 LGYSKPTPIQAACIPLALTGR-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI-LTPTRELAVQVHSMIEKIA 220 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~-dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLI-l~Ptr~La~Q~~~~~~~l~ 220 (678)
.||. |||||.++||.++.|+ ++++++|||||||.+|.++++.. ... ...++.|| ++|||+|+.|+++.+..++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~---~~~~~rLv~~vPtReLa~Qi~~~~~~~~ 86 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG---AKVPRRLVYVVNRRTVVDQVTEEAEKIG 86 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc---ccccceEEEeCchHHHHHHHHHHHHHHH
Confidence 5888 9999999999999998 57788999999999766555522 111 22344455 7799999999999999998
Q ss_pred hcC-----------------------CceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCcc----------
Q 005773 221 QFT-----------------------DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV---------- 267 (678)
Q Consensus 221 ~~~-----------------------~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~---------- 267 (678)
+.. ++++..++||.+...++..+..+++|||+|+ +++.+...+
T Consensus 87 k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~~ 162 (844)
T TIGR02621 87 ERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKSR 162 (844)
T ss_pred HHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccccc
Confidence 754 4889999999999999999999999999995 444432110
Q ss_pred -----CCCCeeEEEEeCCcccccCChHHHHHHHHHHC--CC---CccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCC
Q 005773 268 -----DLDDLAVLILDEADRLLELGFSAEIHELVRLC--PK---RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK 337 (678)
Q Consensus 268 -----~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~--~~---~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~ 337 (678)
.++++++||||||| ++++|...+..|+..+ ++ ++|+++||||++.++..+...++.++..+.+.....
T Consensus 163 pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l 240 (844)
T TIGR02621 163 PLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRL 240 (844)
T ss_pred cchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccc
Confidence 26889999999999 7899999999999965 43 269999999999988888877777776665543322
Q ss_pred CCCCceeEEEEEechhhh-hHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHH-----H
Q 005773 338 RPSTLTEEVVRIRRMREV-NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRL-----E 411 (678)
Q Consensus 338 ~~~~l~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~-----~ 411 (678)
....+.+. +........ .....+..+. ...++++||||||+..++.++..|...++ ..|||.|++.+|. .
T Consensus 241 ~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~ 316 (844)
T TIGR02621 241 AAKKIVKL-VPPSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKE 316 (844)
T ss_pred cccceEEE-EecChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHH
Confidence 22333332 222111100 0111111122 23457899999999999999999998776 8999999999999 8
Q ss_pred HHHHHhc----CC-------ccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCc-eEEEEEeeC
Q 005773 412 ALELFRK----QH-------VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE-GYAVTFVTD 476 (678)
Q Consensus 412 ~l~~F~~----g~-------~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~-G~~i~l~~~ 476 (678)
+++.|++ |. ..|||||+++++||||+. ++||++..| ..+|+||+||+||.|+. |..++++..
T Consensus 317 il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 317 IFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 8999987 44 679999999999999986 899998877 68999999999999875 444555533
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-42 Score=402.21 Aligned_cols=335 Identities=20% Similarity=0.270 Sum_probs=261.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcC
Q 005773 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (678)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~-ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~P 204 (678)
.|.++++++.+.+.+.+.||..|+|+|.++++. ++.|+|+++++|||||||++|.+|+++.+... +.++|||+|
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-----~~~~l~l~P 76 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-----GGKAVYLVP 76 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-----CCeEEEEeC
Confidence 467899999999999999999999999999985 78999999999999999999999999988643 457999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc
Q 005773 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (678)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (678)
+++||.|+++.+..+.. .++++..++|+...... ....++|+|+||+++..++... ...++++++|||||+|.+.
T Consensus 77 ~~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~-~~~l~~l~lvViDE~H~l~ 151 (720)
T PRK00254 77 LKALAEEKYREFKDWEK-LGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHG-SSWIKDVKLVVADEIHLIG 151 (720)
T ss_pred hHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCC-chhhhcCCEEEEcCcCccC
Confidence 99999999999988643 58899999998765432 2356899999999998877654 3457899999999999999
Q ss_pred cCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeE-----EEEEechh----hh
Q 005773 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEE-----VVRIRRMR----EV 355 (678)
Q Consensus 285 ~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~-----~~~~~~~~----~~ 355 (678)
++++...+..++..++...|+|++|||+++ ..++.. ++..+... ...+|..+... +..+.... ..
T Consensus 152 ~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~----~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T PRK00254 152 SYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVV----SDWRPVKLRKGVFYQGFLFWEDGKIERFPN 225 (720)
T ss_pred CccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCcccc----CCCCCCcceeeEecCCeeeccCcchhcchH
Confidence 988889999999998889999999999975 344443 33322111 11122222111 11111100 00
Q ss_pred hHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhh---------------------------------cCCceeeccC
Q 005773 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL---------------------------------AALKAAELHG 402 (678)
Q Consensus 356 ~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~---------------------------------~~~~~~~lhg 402 (678)
.....+...+. .++++||||+|+..++.++..|.. ....++++||
T Consensus 226 ~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHa 303 (720)
T PRK00254 226 SWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHA 303 (720)
T ss_pred HHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCC
Confidence 11112222222 367899999999999877665531 1235899999
Q ss_pred CCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEE-------cCCCC-ChhHHHHHHhhcccCC--CceEEEE
Q 005773 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN-------YACPR-DLTSYVHRVGRTARAG--REGYAVT 472 (678)
Q Consensus 403 ~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~-------~d~p~-s~~~yiQr~GRagR~g--~~G~~i~ 472 (678)
+|++.+|..+++.|++|.++|||||+++++|+|+|++++||. |+.|. +...|+||+|||||.| ..|.+++
T Consensus 304 gl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii 383 (720)
T PRK00254 304 GLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAII 383 (720)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEE
Confidence 999999999999999999999999999999999999999994 56555 5679999999999965 6799999
Q ss_pred EeeCCc
Q 005773 473 FVTDND 478 (678)
Q Consensus 473 l~~~~d 478 (678)
++...+
T Consensus 384 ~~~~~~ 389 (720)
T PRK00254 384 VATTEE 389 (720)
T ss_pred EecCcc
Confidence 987655
No 46
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.9e-43 Score=378.18 Aligned_cols=327 Identities=22% Similarity=0.317 Sum_probs=259.6
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 142 ~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
-+||..+++-|.++|..+++|+|+++..|||.||+++|++|++-. .+.+|||+|..+|.....+.+..
T Consensus 12 ~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------~G~TLVVSPLiSLM~DQV~~l~~--- 79 (590)
T COG0514 12 VFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------EGLTLVVSPLISLMKDQVDQLEA--- 79 (590)
T ss_pred HhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------CCCEEEECchHHHHHHHHHHHHH---
Confidence 379999999999999999999999999999999999999999832 34689999999998765555554
Q ss_pred cCCceeEEEecCCChHHHHHH----hcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCC--hHHHHHHH
Q 005773 222 FTDIRCCLVVGGLSTKMQETA----LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--FSAEIHEL 295 (678)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~~----l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g--f~~~i~~i 295 (678)
.|+.+..+.+..+..+.... ..+..++++.+|++|..--... .+.-..+.++||||||++++|| |++.+..+
T Consensus 80 -~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~-~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l 157 (590)
T COG0514 80 -AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE-LLKRLPISLVAIDEAHCISQWGHDFRPDYRRL 157 (590)
T ss_pred -cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH-HHHhCCCceEEechHHHHhhcCCccCHhHHHH
Confidence 47888888888776655433 2345799999999985321110 1224478899999999999999 77776665
Q ss_pred H---HHCCCCccEEEEEeccChhHHHHHHHhcCC--CeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCC
Q 005773 296 V---RLCPKRRQTMLFSATLTEDVDELIKLSLTK--PLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFT 370 (678)
Q Consensus 296 ~---~~~~~~~q~il~SATl~~~~~~l~~~~~~~--p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 370 (678)
- ..+| +..++++|||.++.+...+...+.. +..+.. ...+|+ +...++... ....+...+.. ......
T Consensus 158 g~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~--sfdRpN-i~~~v~~~~--~~~~q~~fi~~-~~~~~~ 230 (590)
T COG0514 158 GRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRG--SFDRPN-LALKVVEKG--EPSDQLAFLAT-VLPQLS 230 (590)
T ss_pred HHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe--cCCCch-hhhhhhhcc--cHHHHHHHHHh-hccccC
Confidence 4 4444 7889999999999998887665543 333322 333443 221111111 11222222221 124456
Q ss_pred ceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCC
Q 005773 371 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD 450 (678)
Q Consensus 371 ~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s 450 (678)
+..||||.|+..++.++.+|...|+++..+|++|+..+|..+.+.|..++..|+|||.++++|||.|+|++||||++|.|
T Consensus 231 ~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s 310 (590)
T COG0514 231 KSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGS 310 (590)
T ss_pred CCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHh
Q 005773 451 LTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (678)
Q Consensus 451 ~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~ 489 (678)
+++|+|-+|||||.|.+..|++|+++.|....+.+.+..
T Consensus 311 ~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 311 IESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred HHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhh
Confidence 999999999999999999999999999988887776653
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=4.8e-42 Score=398.51 Aligned_cols=333 Identities=21% Similarity=0.225 Sum_probs=257.4
Q ss_pred CCCHHHHHHH-HHcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 131 NLSRPLLRAC-EALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 131 ~l~~~l~~~l-~~~g~~~~~~iQ~~~i~~ll~g------~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
..+..+...+ ..++|. ||++|..+|+.++++ .|++++|+||||||.+|++|++..+.. +.+++|++
T Consensus 435 ~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~------g~qvlvLv 507 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD------GKQVAVLV 507 (926)
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh------CCeEEEEe
Confidence 3444555544 557895 999999999999985 799999999999999999999988743 45799999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHH---hc-CCCCEEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 005773 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA---LR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (678)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~---l~-~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (678)
||++||.|+++.+.+++...++++..++|+.+....... +. +.++|||+||.. +.. .+.+.++++|||||
T Consensus 508 PT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~~--~v~f~~L~llVIDE 581 (926)
T TIGR00580 508 PTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQK--DVKFKDLGLLIIDE 581 (926)
T ss_pred CcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hhC--CCCcccCCEEEeec
Confidence 999999999999999888778899999888765544332 33 468999999943 222 46788999999999
Q ss_pred CcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHH
Q 005773 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359 (678)
Q Consensus 280 ah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (678)
+|++ .......+..++..+|+++||||+.+....+....+.++..+...+.... .+...+.... .......
T Consensus 582 ahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~--~V~t~v~~~~--~~~i~~~ 652 (926)
T TIGR00580 582 EQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRL--PVRTFVMEYD--PELVREA 652 (926)
T ss_pred cccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCcc--ceEEEEEecC--HHHHHHH
Confidence 9994 22334556667788999999999988776666656666665554332221 1222222111 1111111
Q ss_pred HHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC
Q 005773 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (678)
Q Consensus 360 ~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~ 437 (678)
.+..+ ..+++++|||++...++.++..|... ++++..+||.|++.+|..++.+|++|+.+|||||+++++|||+|
T Consensus 653 i~~el---~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp 729 (926)
T TIGR00580 653 IRREL---LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIP 729 (926)
T ss_pred HHHHH---HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccc
Confidence 11111 23678999999999999999999875 78999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCC-ChhHHHHHHhhcccCCCceEEEEEeeCC------cHHHHHHHHHH
Q 005773 438 GVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDN------DRSLLKAIAKR 488 (678)
Q Consensus 438 ~v~~VI~~d~p~-s~~~yiQr~GRagR~g~~G~~i~l~~~~------d~~~l~~i~~~ 488 (678)
++++||++++|. +..+|+||+||+||.|+.|.||+++.+. ....|+.|.+.
T Consensus 730 ~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 730 NANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred cCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 999999999976 6779999999999999999999998653 23445555443
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=5.1e-41 Score=397.89 Aligned_cols=330 Identities=21% Similarity=0.224 Sum_probs=259.2
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHH
Q 005773 134 RPLLRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (678)
Q Consensus 134 ~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g------~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~ 207 (678)
.+..+.+..++| .||++|.++|+.++.+ .|++++|+||||||.+|+.+++..+. .+.+|+||+||++
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------~g~qvlvLvPT~e 660 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------NHKQVAVLVPTTL 660 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------cCCeEEEEeCcHH
Confidence 456667788999 5999999999999997 89999999999999998888877653 3567999999999
Q ss_pred HHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhc----CCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccc
Q 005773 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR----SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (678)
Q Consensus 208 La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~----~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (678)
||.|+++.+.+++...++++.+++|+.+...+...+. +.++|||+||+.| .. .+.+.++++|||||+|++
T Consensus 661 LA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~--~v~~~~L~lLVIDEahrf 734 (1147)
T PRK10689 661 LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS--DVKWKDLGLLIVDEEHRF 734 (1147)
T ss_pred HHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC--CCCHhhCCEEEEechhhc
Confidence 9999999999876666788888998888776655432 4689999999644 22 456788999999999996
Q ss_pred ccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHH
Q 005773 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (678)
Q Consensus 284 l~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 363 (678)
|+.. ...+..++..+|+++||||+.+....+....+.++..+...+... ..+.+.+..+. ....+...+..
T Consensus 735 ---G~~~--~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~--~~~~k~~il~e 805 (1147)
T PRK10689 735 ---GVRH--KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYD--SLVVREAILRE 805 (1147)
T ss_pred ---chhH--HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEEecC--cHHHHHHHHHH
Confidence 4432 345677788999999999999888888777788887776543321 12333222221 11122333333
Q ss_pred HhhccCCceEEEEeccHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccE
Q 005773 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441 (678)
Q Consensus 364 ~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~ 441 (678)
+. .++.++|||+++..++.++..|... ++.+..+||+|++.+|.+++..|++|+.+|||||+++++|||+|+|++
T Consensus 806 l~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~ 882 (1147)
T PRK10689 806 IL---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 (1147)
T ss_pred Hh---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCE
Confidence 32 3578999999999999999999877 789999999999999999999999999999999999999999999999
Q ss_pred EEEcCCC-CChhHHHHHHhhcccCCCceEEEEEeeCC------cHHHHHHHHHH
Q 005773 442 VINYACP-RDLTSYVHRVGRTARAGREGYAVTFVTDN------DRSLLKAIAKR 488 (678)
Q Consensus 442 VI~~d~p-~s~~~yiQr~GRagR~g~~G~~i~l~~~~------d~~~l~~i~~~ 488 (678)
||+.+.+ .+...|+||+||+||.|+.|.|++++... ....++.|.+.
T Consensus 883 VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~ 936 (1147)
T PRK10689 883 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936 (1147)
T ss_pred EEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHh
Confidence 9955443 25568999999999999999999988543 23445555543
No 49
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.3e-40 Score=373.68 Aligned_cols=338 Identities=24% Similarity=0.318 Sum_probs=271.6
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCC--CCCCCeEEEEEcCcHHH
Q 005773 131 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP--KRIPAIRVLILTPTREL 208 (678)
Q Consensus 131 ~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~~~vLIl~Ptr~L 208 (678)
-|++.+.+.+... |..|||.|..+||.+..|+|+|+.||||||||+++.||++..+.... ....+..+|+|+|.|+|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3789999999888 99999999999999999999999999999999999999999999884 22346899999999999
Q ss_pred HHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhcc-CccCCCCeeEEEEeCCcccccC-
Q 005773 209 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-MSVDLDDLAVLILDEADRLLEL- 286 (678)
Q Consensus 209 a~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~-~~~~l~~i~~lVvDEah~ll~~- 286 (678)
.+.+...+..+....|+.+..-+|.++........++.|||+||||+.|.-++... ..-.|.++.++||||.|.+.+.
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 99999999999999999999999999999999999999999999999998777653 1235889999999999998743
Q ss_pred -Ch--HHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCC--CeEEecCCCCCCCCCceeEEEEEech------hhh
Q 005773 287 -GF--SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK--PLRLSADPSAKRPSTLTEEVVRIRRM------REV 355 (678)
Q Consensus 287 -gf--~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~--p~~~~~~~~~~~~~~l~~~~~~~~~~------~~~ 355 (678)
|. .-.+..+.+..+ ..|.|++|||..+ ..+.++..... +..+......... .+. ++..... ...
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k~~-~i~--v~~p~~~~~~~~~~~~ 240 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAKKL-EIK--VISPVEDLIYDEELWA 240 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCCcc-eEE--EEecCCccccccchhH
Confidence 32 233455566666 8999999999984 34444433333 4444332222211 111 1111100 011
Q ss_pred hHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcC-CceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccC
Q 005773 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA-LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (678)
Q Consensus 356 ~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~-~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl 434 (678)
.....+..+...+ ..+|||+||+..++.+...|...+ ..+..+||+++.+.|..+.+.|++|+.+++|||..++.||
T Consensus 241 ~~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGI 318 (814)
T COG1201 241 ALYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGI 318 (814)
T ss_pred HHHHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcc
Confidence 1222333344443 489999999999999999998886 8999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCChhHHHHHHhhccc-CCCceEEEEEeeC
Q 005773 435 DIIGVQTVINYACPRDLTSYVHRVGRTAR-AGREGYAVTFVTD 476 (678)
Q Consensus 435 Di~~v~~VI~~d~p~s~~~yiQr~GRagR-~g~~G~~i~l~~~ 476 (678)
|+.+|+.||+|+.|.++..++||+||+|+ .|.....+++...
T Consensus 319 DiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 319 DIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999999996 5666677776665
No 50
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.5e-40 Score=394.62 Aligned_cols=283 Identities=22% Similarity=0.251 Sum_probs=221.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
+|+ .|+++|..++|.++.|+|++++||||||||+ |.++++..+.. .++++|||+||++|+.|+++.+..++..
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-----~g~~alIL~PTreLa~Qi~~~l~~l~~~ 149 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-----KGKKSYIIFPTRLLVEQVVEKLEKFGEK 149 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-----cCCeEEEEeccHHHHHHHHHHHHHHhhh
Confidence 477 6999999999999999999999999999996 56666555432 2568999999999999999999999988
Q ss_pred CCceeEEEecCCCh-----HHHHHHhc-CCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccccc-----------
Q 005773 223 TDIRCCLVVGGLST-----KMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE----------- 285 (678)
Q Consensus 223 ~~~~v~~~~g~~~~-----~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~----------- 285 (678)
.++.+..++|+... ......+. +.++|+|+||++|.+++. .+....+++|||||||+|+.
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~ 226 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYL 226 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhcccchhhHHHh
Confidence 88888877776542 22233344 468999999999999876 24556799999999999986
Q ss_pred CChH-HHHHHHHHHCCC------------------------CccEEEEEeccChh-HHHHHHHhcCCCeEEecCCCCCCC
Q 005773 286 LGFS-AEIHELVRLCPK------------------------RRQTMLFSATLTED-VDELIKLSLTKPLRLSADPSAKRP 339 (678)
Q Consensus 286 ~gf~-~~i~~i~~~~~~------------------------~~q~il~SATl~~~-~~~l~~~~~~~p~~~~~~~~~~~~ 339 (678)
.||. ..+..++..++. .+|+++||||+++. +.. ..+..+..+.+.......
T Consensus 227 lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~ 303 (1176)
T PRK09401 227 LGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYL 303 (1176)
T ss_pred CCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCccccc
Confidence 6774 567777777664 68999999999875 332 223344444444333334
Q ss_pred CCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHHH---HHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHH
Q 005773 340 STLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQA---AHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416 (678)
Q Consensus 340 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~---~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F 416 (678)
.++.+.++... .+...+..++... +.++||||+++.. ++.++++|...|+++..+||+| .+.++.|
T Consensus 304 rnI~~~yi~~~-----~k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 304 RNIVDSYIVDE-----DSVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred CCceEEEEEcc-----cHHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 45666655432 3344455555443 4689999999777 9999999999999999999999 2346999
Q ss_pred hcCCccEEEE----cccccccCCCCC-ccEEEEcCCCC
Q 005773 417 RKQHVDFLIA----TDVAARGLDIIG-VQTVINYACPR 449 (678)
Q Consensus 417 ~~g~~~vLva----T~~~~~GlDi~~-v~~VI~~d~p~ 449 (678)
++|+++|||| |++++||||+|+ |++|||||+|.
T Consensus 373 ~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 373 EEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 9999999999 699999999999 89999999997
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.8e-40 Score=376.62 Aligned_cols=316 Identities=22% Similarity=0.259 Sum_probs=237.4
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHH
Q 005773 136 LLRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (678)
Q Consensus 136 l~~~l~~~g~~~~~~iQ~~~i~~ll~g------~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La 209 (678)
+......++|. ||++|..+|+.+..+ .+++++|+||||||++|++|++..+. .+.+++|++||++||
T Consensus 251 ~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------~g~q~lilaPT~~LA 323 (681)
T PRK10917 251 LKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------AGYQAALMAPTEILA 323 (681)
T ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEeccHHHH
Confidence 34445667885 999999999999987 38999999999999999999998873 356799999999999
Q ss_pred HHHHHHHHHHhhcCCceeEEEecCCChHHHHH---Hhc-CCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccccc
Q 005773 210 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET---ALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (678)
Q Consensus 210 ~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~---~l~-~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~ 285 (678)
.|+++.+.+++...++++.+++|+.+...... .+. +.++|+|+||+.+.. .+.+.++++|||||+|++..
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrfg~ 397 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRFGV 397 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhhhhH
Confidence 99999999999888999999999988654433 333 459999999988743 34577899999999998532
Q ss_pred CChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHh
Q 005773 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC 365 (678)
Q Consensus 286 ~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 365 (678)
.....+......+++++||||+.+....+.......+..+...+... . .+...++.. .........+...+
T Consensus 398 -----~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r-~-~i~~~~~~~--~~~~~~~~~i~~~~ 468 (681)
T PRK10917 398 -----EQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGR-K-PITTVVIPD--SRRDEVYERIREEI 468 (681)
T ss_pred -----HHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCC-C-CcEEEEeCc--ccHHHHHHHHHHHH
Confidence 22233334455689999999998765544432222222222211111 1 122222211 11111111222222
Q ss_pred hccCCceEEEEeccH--------HHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCC
Q 005773 366 SKTFTSKVIIFSGTK--------QAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435 (678)
Q Consensus 366 ~~~~~~~vLVF~~s~--------~~~~~l~~~L~~~--~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlD 435 (678)
..+.+++|||+.. ..+..++..|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 469 --~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiD 546 (681)
T PRK10917 469 --AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVD 546 (681)
T ss_pred --HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcc
Confidence 3467899999954 4455666766654 578999999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCC-ChhHHHHHHhhcccCCCceEEEEEee
Q 005773 436 IIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVT 475 (678)
Q Consensus 436 i~~v~~VI~~d~p~-s~~~yiQr~GRagR~g~~G~~i~l~~ 475 (678)
+|++++||+|++|. ....|.||+||+||.|.+|.|++++.
T Consensus 547 ip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 547 VPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred cCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99999999999997 57888899999999999999999995
No 52
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.4e-40 Score=379.64 Aligned_cols=339 Identities=19% Similarity=0.246 Sum_probs=251.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCc
Q 005773 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (678)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Pt 205 (678)
.|++++|++.+++.+...+|. |+++|.++++.+++|+|+++++|||||||+++.+++++.+.. +.++||++|+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~------~~k~v~i~P~ 74 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA------GLKSIYIVPL 74 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh------CCcEEEEech
Confidence 467889999999999999998 999999999999999999999999999999999999988743 3578999999
Q ss_pred HHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccccc
Q 005773 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (678)
Q Consensus 206 r~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~ 285 (678)
++||.|+++.+.++. ..++++...+|+...... ....++|+|+||+++..++... ...+.++++|||||||.+.+
T Consensus 75 raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~-~~~l~~v~lvViDEaH~l~d 149 (674)
T PRK01172 75 RSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHD-PYIINDVGLIVADEIHIIGD 149 (674)
T ss_pred HHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCC-hhHHhhcCEEEEecchhccC
Confidence 999999999998864 357888888887654332 2346799999999998887764 34578999999999999987
Q ss_pred CChHHHHHHHH---HHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEec----hhhhhHH
Q 005773 286 LGFSAEIHELV---RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR----MREVNQE 358 (678)
Q Consensus 286 ~gf~~~i~~i~---~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~ 358 (678)
.++...+..++ ...+...|+|++|||+++ ..++... +..+. +. ...++..+......... .......
T Consensus 150 ~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~w-l~~~~-~~---~~~r~vpl~~~i~~~~~~~~~~~~~~~~ 223 (674)
T PRK01172 150 EDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQW-LNASL-IK---SNFRPVPLKLGILYRKRLILDGYERSQV 223 (674)
T ss_pred CCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHH-hCCCc-cC---CCCCCCCeEEEEEecCeeeecccccccc
Confidence 76666555554 445678899999999975 3444432 22221 10 11122222211110000 0000000
Q ss_pred HHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhc-------------------------CCceeeccCCCCHHHHHH
Q 005773 359 AVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLA-------------------------ALKAAELHGNLTQAQRLE 411 (678)
Q Consensus 359 ~~l~~~~~--~~~~~~vLVF~~s~~~~~~l~~~L~~~-------------------------~~~~~~lhg~l~~~~R~~ 411 (678)
. +..++. ...++++||||+++..++.++..|... ...++.+||+|++.+|..
T Consensus 224 ~-~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 224 D-INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred c-HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 0 111111 124679999999999999998887542 125788999999999999
Q ss_pred HHHHHhcCCccEEEEcccccccCCCCCccEEEEcCC---------CCChhHHHHHHhhcccCCC--ceEEEEEeeCCc-H
Q 005773 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC---------PRDLTSYVHRVGRTARAGR--EGYAVTFVTDND-R 479 (678)
Q Consensus 412 ~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~---------p~s~~~yiQr~GRagR~g~--~G~~i~l~~~~d-~ 479 (678)
+++.|++|.++|||||+++++|+|+|+. .||+++. |.++.+|.||+|||||.|. .|.+++++...+ .
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~ 381 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASY 381 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccH
Confidence 9999999999999999999999999986 5555443 4578899999999999884 677888765443 3
Q ss_pred HHHHH
Q 005773 480 SLLKA 484 (678)
Q Consensus 480 ~~l~~ 484 (678)
..++.
T Consensus 382 ~~~~~ 386 (674)
T PRK01172 382 DAAKK 386 (674)
T ss_pred HHHHH
Confidence 33333
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=9.9e-40 Score=388.19 Aligned_cols=303 Identities=22% Similarity=0.310 Sum_probs=227.0
Q ss_pred EEcCCCchhhhhhhhchhHHHhcCCC-------CCCCeEEEEEcCcHHHHHHHHHHHHHHh------------hcCCcee
Q 005773 167 GSAITGSGKTAAFALPTLERLLYRPK-------RIPAIRVLILTPTRELAVQVHSMIEKIA------------QFTDIRC 227 (678)
Q Consensus 167 ~~a~TGsGKT~~~~l~~l~~l~~~~~-------~~~~~~vLIl~Ptr~La~Q~~~~~~~l~------------~~~~~~v 227 (678)
|++|||||||++|.||+|..++.... ...+.++|||+|+++|+.|+++.++... ...+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999999986431 1246799999999999999999886521 1247899
Q ss_pred EEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccC--C--hHHHHHHHHHHCCCCc
Q 005773 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL--G--FSAEIHELVRLCPKRR 303 (678)
Q Consensus 228 ~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~--g--f~~~i~~i~~~~~~~~ 303 (678)
...+|+.+...+...+++.++|||+||++|..+|.+.....++++++|||||+|.|.+. | +...+..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999999888877788899999999999988876543346899999999999999864 4 3455667777778889
Q ss_pred cEEEEEeccChhHHHHHHHhc-CCCeEEecCCCCCCCCCceeEEEEEechhh------------------hhHHHHHHHH
Q 005773 304 QTMLFSATLTEDVDELIKLSL-TKPLRLSADPSAKRPSTLTEEVVRIRRMRE------------------VNQEAVLLSL 364 (678)
Q Consensus 304 q~il~SATl~~~~~~l~~~~~-~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------~~~~~~l~~~ 364 (678)
|+|++|||+++ ..++..... ..|+.+.. ....++..+. .++....... .........+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999987 344444332 23555533 2222222222 1121111000 0000111111
Q ss_pred hh-ccCCceEEEEeccHHHHHHHHHHHhhcC---------------------------------CceeeccCCCCHHHHH
Q 005773 365 CS-KTFTSKVIIFSGTKQAAHRLKILFGLAA---------------------------------LKAAELHGNLTQAQRL 410 (678)
Q Consensus 365 ~~-~~~~~~vLVF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~lhg~l~~~~R~ 410 (678)
+. ...+.++||||||+..|+.++..|+... +.+..+||+|++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 11 1235789999999999999999887531 1256899999999999
Q ss_pred HHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccC-CCceEEEE
Q 005773 411 EALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA-GREGYAVT 472 (678)
Q Consensus 411 ~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~-g~~G~~i~ 472 (678)
.+++.|++|+++|||||+.+++||||++|++||||+.|.++.+|+||+||+||. |..+.+++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli 380 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLF 380 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEE
Confidence 999999999999999999999999999999999999999999999999999994 33444553
No 54
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2e-39 Score=369.89 Aligned_cols=318 Identities=21% Similarity=0.253 Sum_probs=236.2
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHH
Q 005773 134 RPLLRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (678)
Q Consensus 134 ~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g------~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~ 207 (678)
..+.+.+..++| .||++|..+|+.++.+ .+.+++|+||||||++|++|++..+. .+.+++|++||++
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------~g~qvlilaPT~~ 295 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------AGYQVALMAPTEI 295 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH------cCCcEEEECCHHH
Confidence 345667788999 5999999999999986 26899999999999999999998874 2457999999999
Q ss_pred HHHHHHHHHHHHhhcCCceeEEEecCCChHHHHH---Hh-cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccc
Q 005773 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET---AL-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (678)
Q Consensus 208 La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~---~l-~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (678)
||.|+++.+.+++...++++.+++|+.+...... .+ .+.++|+|+||+.+.+ .+.+.++++|||||+|++
T Consensus 296 LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~f 369 (630)
T TIGR00643 296 LAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRF 369 (630)
T ss_pred HHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhc
Confidence 9999999999998888999999999987665332 23 3468999999988753 345778999999999985
Q ss_pred ccCChHHHHHHHHHHCC--CCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHH
Q 005773 284 LELGFSAEIHELVRLCP--KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361 (678)
Q Consensus 284 l~~gf~~~i~~i~~~~~--~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 361 (678)
.. . ....+..... ..+++++||||+.+....+..........+...+... ..+...++. . ......+
T Consensus 370 g~---~-qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r--~~i~~~~~~--~---~~~~~~~ 438 (630)
T TIGR00643 370 GV---E-QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGR--KPITTVLIK--H---DEKDIVY 438 (630)
T ss_pred cH---H-HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCC--CceEEEEeC--c---chHHHHH
Confidence 32 1 1122333332 2678999999987755443321111111111111111 112221111 1 1112222
Q ss_pred HHHhhc-cCCceEEEEeccH--------HHHHHHHHHHhh--cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc
Q 005773 362 LSLCSK-TFTSKVIIFSGTK--------QAAHRLKILFGL--AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 430 (678)
Q Consensus 362 ~~~~~~-~~~~~vLVF~~s~--------~~~~~l~~~L~~--~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~ 430 (678)
..+... ..+..++|||+.. ..++.++..|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 518 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVI 518 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcee
Confidence 222221 2457899999875 445566666654 37889999999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEcCCCC-ChhHHHHHHhhcccCCCceEEEEEee
Q 005773 431 ARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVT 475 (678)
Q Consensus 431 ~~GlDi~~v~~VI~~d~p~-s~~~yiQr~GRagR~g~~G~~i~l~~ 475 (678)
++|+|+|++++||+|++|. +...|.||+||+||.|.+|.|++++.
T Consensus 519 e~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 519 EVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred ecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999999997 67888999999999999999999983
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=9.1e-40 Score=367.53 Aligned_cols=315 Identities=18% Similarity=0.178 Sum_probs=233.7
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchhhhh---------hhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 149 TPIQAACIPLALTGRDICGSAITGSGKTAA---------FALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 149 ~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~---------~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
..+|.++++.++.|+++|+.|+||||||++ |++|.+..+..-......++++|++|||+||.|+...+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999997 44455554421111123568999999999999999988776
Q ss_pred hhc---CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHH
Q 005773 220 AQF---TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 296 (678)
Q Consensus 220 ~~~---~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~ 296 (678)
..+ .+..+.+.+|+... ..........+|+|+|++.. ...++++++|||||||++...+ +.+..++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred hCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc--------ccccccCCEEEccccccCccch--hHHHHHH
Confidence 554 46778888998773 22222333679999997531 1247789999999999998765 3444455
Q ss_pred HHC-CCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEech-------hhhhHHHHHHHHhhc-
Q 005773 297 RLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM-------REVNQEAVLLSLCSK- 367 (678)
Q Consensus 297 ~~~-~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~l~~~~~~- 367 (678)
... ++.+|+++||||++.++..+ ..++.+|..+.+.. .....+.+.++..... ....+...+..+...
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~ 391 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYT 391 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhh
Confidence 433 34469999999999888776 56778887776632 2223444444322110 011122222222221
Q ss_pred -cCCceEEEEeccHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHH-hcCCccEEEEcccccccCCCCCccEEE
Q 005773 368 -TFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELF-RKQHVDFLIATDVAARGLDIIGVQTVI 443 (678)
Q Consensus 368 -~~~~~vLVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~l~~~~R~~~l~~F-~~g~~~vLvaT~~~~~GlDi~~v~~VI 443 (678)
..++.+|||++++..++.+...|... ++.+..+||+|++. .++++.| ++|+.+|||||++|+||||||+|++||
T Consensus 392 ~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 392 PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEE
Confidence 23468999999999999999999876 79999999999985 4667777 689999999999999999999999999
Q ss_pred EcC---CCC---------ChhHHHHHHhhcccCCCceEEEEEeeCCcHH
Q 005773 444 NYA---CPR---------DLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480 (678)
Q Consensus 444 ~~d---~p~---------s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~ 480 (678)
++| .|. |..+|+||+|||||. ++|.|+.|+++.+..
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLK 517 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhH
Confidence 999 665 788999999999998 799999999987643
No 56
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=9.9e-39 Score=367.34 Aligned_cols=308 Identities=18% Similarity=0.231 Sum_probs=234.9
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH-HhhcCCceeEE
Q 005773 151 IQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCL 229 (678)
Q Consensus 151 iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~-l~~~~~~~v~~ 229 (678)
+-.+++..+.+++++|++|+||||||++|.+++++... ..++++|++|||++|.|+++.+.+ +....+..|++
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 34556677778899999999999999999999998762 245899999999999999998854 43345666776
Q ss_pred EecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCc-ccccCChHH-HHHHHHHHCCCCccEEE
Q 005773 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD-RLLELGFSA-EIHELVRLCPKRRQTML 307 (678)
Q Consensus 230 ~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah-~ll~~gf~~-~i~~i~~~~~~~~q~il 307 (678)
.+++.+ .....++|+|+|||+|++++.+ ...++++++|||||+| ++++.++.. .+..+...++...|+|+
T Consensus 80 ~vr~~~------~~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIl 151 (819)
T TIGR01970 80 RVRGEN------KVSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILA 151 (819)
T ss_pred EEcccc------ccCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEE
Confidence 666533 2344578999999999999886 4578999999999999 477766543 33456666788899999
Q ss_pred EEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhh--HHHHHHHHhhccCCceEEEEeccHHHHHH
Q 005773 308 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN--QEAVLLSLCSKTFTSKVIIFSGTKQAAHR 385 (678)
Q Consensus 308 ~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~vLVF~~s~~~~~~ 385 (678)
||||++... +..++.++..+.... +...+.+.+.......... ....+..++.. ..+.+|||+++..+++.
T Consensus 152 mSATl~~~~---l~~~l~~~~vI~~~g---r~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~ 224 (819)
T TIGR01970 152 MSATLDGER---LSSLLPDAPVVESEG---RSFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRR 224 (819)
T ss_pred EeCCCCHHH---HHHHcCCCcEEEecC---cceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHH
Confidence 999999754 345555544444322 1112333333221111100 01122333332 35789999999999999
Q ss_pred HHHHHhh---cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCC------------
Q 005773 386 LKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD------------ 450 (678)
Q Consensus 386 l~~~L~~---~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s------------ 450 (678)
+...|.. .++.+..+||+|++.+|.++++.|++|..+||||||++++|||||+|++||++++|..
T Consensus 225 l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L 304 (819)
T TIGR01970 225 VQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRL 304 (819)
T ss_pred HHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCcee
Confidence 9999986 4789999999999999999999999999999999999999999999999999999862
Q ss_pred ------hhHHHHHHhhcccCCCceEEEEEeeCCcHH
Q 005773 451 ------LTSYVHRVGRTARAGREGYAVTFVTDNDRS 480 (678)
Q Consensus 451 ------~~~yiQr~GRagR~g~~G~~i~l~~~~d~~ 480 (678)
-.+|+||+|||||. ++|.||.|+++.+..
T Consensus 305 ~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 305 ETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred eEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 34689999999998 799999999986543
No 57
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=6.6e-38 Score=372.74 Aligned_cols=292 Identities=23% Similarity=0.281 Sum_probs=219.5
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHH
Q 005773 135 PLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214 (678)
Q Consensus 135 ~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~ 214 (678)
.+.+.+.......|+++|+.++|.++.|+|++++||||||||+ |.+|++..+... ++++|||+||++||.|+++
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~-----g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK-----GKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc-----CCeEEEEeCHHHHHHHHHH
Confidence 3445555434446999999999999999999999999999997 677777665432 5689999999999999999
Q ss_pred HHHHHhhcCCceeE---EEecCCChHHHHH---Hhc-CCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccccc--
Q 005773 215 MIEKIAQFTDIRCC---LVVGGLSTKMQET---ALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-- 285 (678)
Q Consensus 215 ~~~~l~~~~~~~v~---~~~g~~~~~~~~~---~l~-~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~-- 285 (678)
.+..++...++.+. .++|+.+...+.. .+. ++++|+|+||++|.+++.... . +++++||||||+|++
T Consensus 140 ~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~---~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 140 KISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG---P-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc---C-CCCEEEEeChHhhhhcc
Confidence 99999887766543 4678877665432 333 459999999999998876521 2 899999999999997
Q ss_pred ---------CChHHH-HHHH----------------------HHHCCCCcc--EEEEEecc-ChhHHHHHHHhcCCCeEE
Q 005773 286 ---------LGFSAE-IHEL----------------------VRLCPKRRQ--TMLFSATL-TEDVDELIKLSLTKPLRL 330 (678)
Q Consensus 286 ---------~gf~~~-i~~i----------------------~~~~~~~~q--~il~SATl-~~~~~~l~~~~~~~p~~~ 330 (678)
+||... +..+ ++.+++.+| ++++|||+ +..+.. .++..+..+
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~ 292 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGF 292 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccce
Confidence 677653 3333 234456666 56789994 443332 334455555
Q ss_pred ecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccH---HHHHHHHHHHhhcCCceeeccCCCCHH
Q 005773 331 SADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTK---QAAHRLKILFGLAALKAAELHGNLTQA 407 (678)
Q Consensus 331 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~---~~~~~l~~~L~~~~~~~~~lhg~l~~~ 407 (678)
.+.........+.+.++.... ....+..++... +.++||||+++ ..++.++.+|...|+++..+||++++
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~~-----~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~- 365 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDED-----LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK- 365 (1171)
T ss_pred EecCccccccceEEEEEeccc-----HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH-
Confidence 554443344455555543221 122344444443 56899999999 99999999999999999999999974
Q ss_pred HHHHHHHHHhcCCccEEEE----cccccccCCCCC-ccEEEEcCCCC
Q 005773 408 QRLEALELFRKQHVDFLIA----TDVAARGLDIIG-VQTVINYACPR 449 (678)
Q Consensus 408 ~R~~~l~~F~~g~~~vLva----T~~~~~GlDi~~-v~~VI~~d~p~ 449 (678)
.+++.|++|+++|||| |++++||||||+ |++|||||+|.
T Consensus 366 ---~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 ---EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ---HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 6899999999999999 599999999999 89999999884
No 58
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.4e-38 Score=383.06 Aligned_cols=330 Identities=20% Similarity=0.231 Sum_probs=251.7
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHH
Q 005773 135 PLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213 (678)
Q Consensus 135 ~l~~~l~~-~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~ 213 (678)
.+.+.+++ +|| .|+++|+.+||.++.|+|+++.||||||||++++++++... ..+.++|||+||++|+.|++
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~------~~g~~aLVl~PTreLa~Qi~ 139 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA------LKGKKCYIILPTTLLVKQTV 139 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH------hcCCeEEEEECHHHHHHHHH
Confidence 45555655 899 59999999999999999999999999999996555554332 12457999999999999999
Q ss_pred HHHHHHhhcC--CceeEEEecCCChHHHHH---Hhc-CCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccC-
Q 005773 214 SMIEKIAQFT--DIRCCLVVGGLSTKMQET---ALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL- 286 (678)
Q Consensus 214 ~~~~~l~~~~--~~~v~~~~g~~~~~~~~~---~l~-~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~- 286 (678)
+.+..++... ++.+..++|+.+...+.. .+. +.++|+|+||++|.+++... . ..+++++||||||+|+.|
T Consensus 140 ~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~-~~~i~~iVVDEAD~ml~~~ 216 (1638)
T PRK14701 140 EKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--K-HLKFDFIFVDDVDAFLKAS 216 (1638)
T ss_pred HHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--h-hCCCCEEEEECceeccccc
Confidence 9999998765 466778889888766533 333 45899999999998876642 1 267899999999999874
Q ss_pred ----------ChHHHHHH----HHH----------------------HCCCCcc-EEEEEeccChhHHHHHHHhcCCCeE
Q 005773 287 ----------GFSAEIHE----LVR----------------------LCPKRRQ-TMLFSATLTEDVDELIKLSLTKPLR 329 (678)
Q Consensus 287 ----------gf~~~i~~----i~~----------------------~~~~~~q-~il~SATl~~~~~~l~~~~~~~p~~ 329 (678)
||...+.. +++ .+++.+| ++++|||+++.-. ....+..+..
T Consensus 217 knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~ 294 (1638)
T PRK14701 217 KNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRELLG 294 (1638)
T ss_pred cccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcCeE
Confidence 77766653 322 2355566 6779999986311 1123456666
Q ss_pred EecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHHH---HHHHHHHHhhcCCceeeccCCCCH
Q 005773 330 LSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQA---AHRLKILFGLAALKAAELHGNLTQ 406 (678)
Q Consensus 330 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~---~~~l~~~L~~~~~~~~~lhg~l~~ 406 (678)
+.+.........+.+.++.... ..+ ..+..++... +.++||||+|+.. ++.++.+|...|+++..+||+
T Consensus 295 f~v~~~~~~lr~i~~~yi~~~~---~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 295 FEVGSGRSALRNIVDVYLNPEK---IIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EEecCCCCCCCCcEEEEEECCH---HHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 6665444444456666554321 112 3455555544 5789999999875 589999999999999999995
Q ss_pred HHHHHHHHHHhcCCccEEEEc----ccccccCCCCC-ccEEEEcCCCC---ChhHHHHHH-------------hhcccCC
Q 005773 407 AQRLEALELFRKQHVDFLIAT----DVAARGLDIIG-VQTVINYACPR---DLTSYVHRV-------------GRTARAG 465 (678)
Q Consensus 407 ~~R~~~l~~F~~g~~~vLvaT----~~~~~GlDi~~-v~~VI~~d~p~---s~~~yiQr~-------------GRagR~g 465 (678)
|..+++.|++|+.+||||| ++++||||+|+ |++|||||+|. +...|.|.. ||+||.|
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 8899999999999999999 58999999999 99999999999 888777665 9999999
Q ss_pred CceEEEEEeeCCcHHHHHHHH
Q 005773 466 REGYAVTFVTDNDRSLLKAIA 486 (678)
Q Consensus 466 ~~G~~i~l~~~~d~~~l~~i~ 486 (678)
.++.+++.+...+...++.+.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~l 465 (1638)
T PRK14701 445 IPIEGVLDVFPEDVEFLRSIL 465 (1638)
T ss_pred CcchhHHHhHHHHHHHHHHHh
Confidence 888887777777766666554
No 59
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-38 Score=318.97 Aligned_cols=335 Identities=22% Similarity=0.337 Sum_probs=255.3
Q ss_pred HHHHHHHHH-cCCCCC-cHHHHHHHHHHhcC-CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 005773 134 RPLLRACEA-LGYSKP-TPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (678)
Q Consensus 134 ~~l~~~l~~-~g~~~~-~~iQ~~~i~~ll~g-~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~ 210 (678)
..+.++|++ +|+.++ ++.|..++..+..+ +||.+++|||+||+++|+||.|-+ .+-+||+.|..+|..
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---------CCeEEEehHHHHHHH
Confidence 345666655 677765 79999999999887 599999999999999999999854 346899999999977
Q ss_pred HHHHHHHHHhhcCCceeEEEecCCChHHHHHHh------cCCCCEEEECchHH-----HHHHhccCccCCCCeeEEEEeC
Q 005773 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL------RSMPDIVVATPGRM-----IDHLRNSMSVDLDDLAVLILDE 279 (678)
Q Consensus 211 Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l------~~~~dIiv~Tp~~L-----~~~l~~~~~~~l~~i~~lVvDE 279 (678)
...+.+..| .+++..+.+-.+..+....+ +....|++.||+.- ...|.. ..+-.-+.++||||
T Consensus 76 DQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVDE 149 (641)
T KOG0352|consen 76 DQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVDE 149 (641)
T ss_pred HHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEech
Confidence 666666554 55566666666655544333 34567999999863 222221 11234578999999
Q ss_pred CcccccCC--hHHHHHHH--HHHCCCCccEEEEEeccChhHHHHH--HHhcCCCeEEecCCCCCCCCCceeEEEEEec-h
Q 005773 280 ADRLLELG--FSAEIHEL--VRLCPKRRQTMLFSATLTEDVDELI--KLSLTKPLRLSADPSAKRPSTLTEEVVRIRR-M 352 (678)
Q Consensus 280 ah~ll~~g--f~~~i~~i--~~~~~~~~q~il~SATl~~~~~~l~--~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~-~ 352 (678)
||++.+|| |++.+..+ ++.......-+.+|||.++.+.+.+ .+.+++|+.+...+... .+.|+.+.. .
T Consensus 150 AHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR-----~NLFYD~~~K~ 224 (641)
T KOG0352|consen 150 AHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFR-----DNLFYDNHMKS 224 (641)
T ss_pred hhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchh-----hhhhHHHHHHH
Confidence 99999999 45555544 2333356778999999999998876 45677888776533221 111111110 0
Q ss_pred hhhhHHHHHHHHhh-------------ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC
Q 005773 353 REVNQEAVLLSLCS-------------KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419 (678)
Q Consensus 353 ~~~~~~~~l~~~~~-------------~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g 419 (678)
...+....|..++. +...+..||||.|+..+++|+..|...|+.+..+|.++...+|..+.+.|.+|
T Consensus 225 ~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~ 304 (641)
T KOG0352|consen 225 FITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNN 304 (641)
T ss_pred HhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcC
Confidence 11122222333322 22346789999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHH
Q 005773 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (678)
Q Consensus 420 ~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~ 488 (678)
+..|++||..+++|+|-|+|++|||+++|.|...|.|..||+||.|.+.+|.++|+.+|+..+..+...
T Consensus 305 ~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~ 373 (641)
T KOG0352|consen 305 EIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSG 373 (641)
T ss_pred CCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999888776654
No 60
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.9e-39 Score=327.04 Aligned_cols=289 Identities=34% Similarity=0.471 Sum_probs=232.5
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhcC---CceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCC
Q 005773 195 PAIRVLILTPTRELAVQVHSMIEKIAQFT---DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (678)
Q Consensus 195 ~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~---~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~ 271 (678)
+.+.++|+-|.|+|+.|+++.+++|-.+. .++..++.||.....+...+..+.+|+|+||+||.+.+... .+.+..
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g-~~~lt~ 363 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG-LVTLTH 363 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc-ceeeee
Confidence 45789999999999999999888775543 45666888998888899999999999999999999988775 678899
Q ss_pred eeEEEEeCCcccccCChHHHHHHHHHHCCC------CccEEEEEeccCh-hHHHHHHHhcCCCeEEecCCCCCCCCCcee
Q 005773 272 LAVLILDEADRLLELGFSAEIHELVRLCPK------RRQTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTE 344 (678)
Q Consensus 272 i~~lVvDEah~ll~~gf~~~i~~i~~~~~~------~~q~il~SATl~~-~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~ 344 (678)
..++|+|||+.++..|+.+.|..+...+|+ ..|.++.|||+.- ++..+....++-|..+........|....+
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 999999999999999999988888777763 5799999999973 455555566777777776655555555444
Q ss_pred EEEEEechh-------------------------------hhhHHH-----HHHHHhhccCCceEEEEeccHHHHHHHHH
Q 005773 345 EVVRIRRMR-------------------------------EVNQEA-----VLLSLCSKTFTSKVIIFSGTKQAAHRLKI 388 (678)
Q Consensus 345 ~~~~~~~~~-------------------------------~~~~~~-----~l~~~~~~~~~~~vLVF~~s~~~~~~l~~ 388 (678)
...-+.+.. ...... .-...+++....+.||||.|+..|+.|..
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 433222100 000000 01112234445789999999999999999
Q ss_pred HHhhcC---CceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCC
Q 005773 389 LFGLAA---LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465 (678)
Q Consensus 389 ~L~~~~---~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g 465 (678)
+|...| +++..+||+..+.+|...++.|+.+.+++||||++++|||||.++-+|||..+|..-..|+||+||.||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 998774 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeeCCcHHHHHH
Q 005773 466 REGYAVTFVTDNDRSLLKA 484 (678)
Q Consensus 466 ~~G~~i~l~~~~d~~~l~~ 484 (678)
+-|.+|+++...-.+.+..
T Consensus 604 rmglaislvat~~ekvwyh 622 (725)
T KOG0349|consen 604 RMGLAISLVATVPEKVWYH 622 (725)
T ss_pred hcceeEEEeeccchheeeh
Confidence 9999999987654444433
No 61
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.4e-38 Score=362.91 Aligned_cols=307 Identities=17% Similarity=0.225 Sum_probs=232.9
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH-HhhcCCceeEE
Q 005773 151 IQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK-IAQFTDIRCCL 229 (678)
Q Consensus 151 iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~-l~~~~~~~v~~ 229 (678)
+-.+++..+.+++++++.|+||||||++|.+++++... ..+++||++|||++|.|+++.+.. +....+..|++
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 34456667778899999999999999999999987632 235899999999999999998854 44446777887
Q ss_pred EecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc-cccCChH-HHHHHHHHHCCCCccEEE
Q 005773 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-LLELGFS-AEIHELVRLCPKRRQTML 307 (678)
Q Consensus 230 ~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~-ll~~gf~-~~i~~i~~~~~~~~q~il 307 (678)
.+++.+.. ....+|+|+|||+|++++.. ...++++++|||||+|. .++..+. ..+..++..++...|+|+
T Consensus 83 ~vr~~~~~------~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlil 154 (812)
T PRK11664 83 RMRAESKV------GPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred EecCcccc------CCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEE
Confidence 77765422 23457999999999998886 45789999999999997 4554432 334556677788899999
Q ss_pred EEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhH--HHHHHHHhhccCCceEEEEeccHHHHHH
Q 005773 308 FSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ--EAVLLSLCSKTFTSKVIIFSGTKQAAHR 385 (678)
Q Consensus 308 ~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~vLVF~~s~~~~~~ 385 (678)
||||++... +..++.++..+.... +...+.+.++.......... ...+..++. ...+.+|||++++.+++.
T Consensus 155 mSATl~~~~---l~~~~~~~~~I~~~g---r~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~ei~~ 227 (812)
T PRK11664 155 MSATLDNDR---LQQLLPDAPVIVSEG---RSFPVERRYQPLPAHQRFDEAVARATAELLR-QESGSLLLFLPGVGEIQR 227 (812)
T ss_pred EecCCCHHH---HHHhcCCCCEEEecC---ccccceEEeccCchhhhHHHHHHHHHHHHHH-hCCCCEEEEcCCHHHHHH
Confidence 999998652 234555544444322 12223443333221111100 012223332 236889999999999999
Q ss_pred HHHHHhh---cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCC------------
Q 005773 386 LKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRD------------ 450 (678)
Q Consensus 386 l~~~L~~---~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s------------ 450 (678)
++..|.. .++.+..+||+|++.+|..++..|.+|+.+|||||+++++||||++|++||++++|..
T Consensus 228 l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L 307 (812)
T PRK11664 228 VQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRL 307 (812)
T ss_pred HHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCccee
Confidence 9999986 5788999999999999999999999999999999999999999999999999888753
Q ss_pred ------hhHHHHHHhhcccCCCceEEEEEeeCCcH
Q 005773 451 ------LTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (678)
Q Consensus 451 ------~~~yiQr~GRagR~g~~G~~i~l~~~~d~ 479 (678)
-.+|+||+|||||. ++|.||.|+++.+.
T Consensus 308 ~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 308 VTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred EEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 35799999999997 69999999997654
No 62
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.4e-36 Score=334.56 Aligned_cols=321 Identities=24% Similarity=0.234 Sum_probs=243.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
+|.. |+++|..++|.++.|+ |+.+.||+|||++|.+|++.... .++.|+||+||++||.|.++++..++.+
T Consensus 100 lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al------~G~~v~VvTptreLA~qdae~~~~l~~~ 170 (656)
T PRK12898 100 LGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL------AGLPVHVITVNDYLAERDAELMRPLYEA 170 (656)
T ss_pred hCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh------cCCeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 4554 9999999999999999 99999999999999999998764 3567999999999999999999999999
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccCc------------------------cCCCCeeEEEE
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMS------------------------VDLDDLAVLIL 277 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~~------------------------~~l~~i~~lVv 277 (678)
.+++|++++|+.+.. ......++||+|+|..-| .++|+.... .....+.+.||
T Consensus 171 lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 171 LGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred cCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 999999999997654 333456789999999776 555554321 12356789999
Q ss_pred eCCcccc-c--------------C---ChHH--------------------------------HHHHHHHHCC-------
Q 005773 278 DEADRLL-E--------------L---GFSA--------------------------------EIHELVRLCP------- 300 (678)
Q Consensus 278 DEah~ll-~--------------~---gf~~--------------------------------~i~~i~~~~~------- 300 (678)
||+|.++ + . .+.. .+..++..++
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~ 328 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAV 328 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccch
Confidence 9999843 1 0 0000 0000000000
Q ss_pred -----------------C-------------------------------------------------------------C
Q 005773 301 -----------------K-------------------------------------------------------------R 302 (678)
Q Consensus 301 -----------------~-------------------------------------------------------------~ 302 (678)
+ -
T Consensus 329 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y 408 (656)
T PRK12898 329 RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhh
Confidence 0 0
Q ss_pred ccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhcc--CCceEEEEeccH
Q 005773 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT--FTSKVIIFSGTK 380 (678)
Q Consensus 303 ~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~vLVF~~s~ 380 (678)
.++.+||||++....++...+..+++.+.......+. ..+.++.. ....+...+...+... .+.++||||+|+
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~--~~~~~v~~---t~~~K~~aL~~~i~~~~~~~~pvLIft~t~ 483 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRR--HLPDEVFL---TAAAKWAAVAARVRELHAQGRPVLVGTRSV 483 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccce--ecCCEEEe---CHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 2578999999988888888888787776654333211 22222222 2234445555555432 357899999999
Q ss_pred HHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC---Ccc-----EEEEcCCCCChh
Q 005773 381 QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII---GVQ-----TVINYACPRDLT 452 (678)
Q Consensus 381 ~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~---~v~-----~VI~~d~p~s~~ 452 (678)
..++.++..|...|+.+..|||.+. +|...+..|..+...|+||||+++||+||+ +|. +||+|++|.|..
T Consensus 484 ~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r 561 (656)
T PRK12898 484 AASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSAR 561 (656)
T ss_pred HHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHH
Confidence 9999999999999999999999865 455555666666677999999999999999 776 999999999999
Q ss_pred HHHHHHhhcccCCCceEEEEEeeCCcHHH
Q 005773 453 SYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (678)
Q Consensus 453 ~yiQr~GRagR~g~~G~~i~l~~~~d~~~ 481 (678)
.|+||+|||||.|.+|.+++|++..|.-+
T Consensus 562 ~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 562 IDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred HHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 99999999999999999999999876443
No 63
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.3e-36 Score=313.87 Aligned_cols=326 Identities=25% Similarity=0.350 Sum_probs=242.1
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCc
Q 005773 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225 (678)
Q Consensus 146 ~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~ 225 (678)
-.++.||......++.+ |+|++.|||.|||+++++.+...+... ++++|+++||+.|+.|.++.+.++...+.-
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~-----~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~ 87 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF-----GGKVLFLAPTKPLVLQHAEFCRKVTGIPED 87 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc-----CCeEEEecCCchHHHHHHHHHHHHhCCChh
Confidence 35888999988887776 999999999999999888888777442 237999999999999999999998887777
Q ss_pred eeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc-cCChHHHHHHHHHHCCCCcc
Q 005773 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQ 304 (678)
Q Consensus 226 ~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~i~~~~~~~~q 304 (678)
.++.++|..++......+ ...+|+|+||..+.+-|..+ .+++.++.++|+||||+-. +..+......+++. .+++.
T Consensus 88 ~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~G-rid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~-~k~~~ 164 (542)
T COG1111 88 EIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAG-RIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS-AKNPL 164 (542)
T ss_pred heeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcC-ccChHHceEEEechhhhccCcchHHHHHHHHHHh-ccCce
Confidence 888999988877665544 44699999999999888875 6889999999999999866 55555555555544 45678
Q ss_pred EEEEEeccChhHHHH---HHHhcCCCeEEecCCCCCCCC---CceeEEEEEe----------------------------
Q 005773 305 TMLFSATLTEDVDEL---IKLSLTKPLRLSADPSAKRPS---TLTEEVVRIR---------------------------- 350 (678)
Q Consensus 305 ~il~SATl~~~~~~l---~~~~~~~p~~~~~~~~~~~~~---~l~~~~~~~~---------------------------- 350 (678)
++++|||+..+.... +...--..+.+.........+ ...-.++.+.
T Consensus 165 ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 165 ILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred EEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 999999998665443 222111112211110000000 0000000000
Q ss_pred -----------------------chhhhhH--------------------------------------------------
Q 005773 351 -----------------------RMREVNQ-------------------------------------------------- 357 (678)
Q Consensus 351 -----------------------~~~~~~~-------------------------------------------------- 357 (678)
.......
T Consensus 245 ~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l 324 (542)
T COG1111 245 IESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSL 324 (542)
T ss_pred eeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHH
Confidence 0000000
Q ss_pred -------------------------HH----HHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCcee-ec-------
Q 005773 358 -------------------------EA----VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA-EL------- 400 (678)
Q Consensus 358 -------------------------~~----~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~-~l------- 400 (678)
.. .+...+.+..+.++|||++.+..++.+.++|...+..+. .+
T Consensus 325 ~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~ 404 (542)
T COG1111 325 LADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASRE 404 (542)
T ss_pred hcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccc
Confidence 00 000111233457999999999999999999999988774 22
Q ss_pred -cCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcH
Q 005773 401 -HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (678)
Q Consensus 401 -hg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~ 479 (678)
..+|+|.++.+++++|++|.++|||||+++++|||||.|+.||+|++-.|+..++||.||||| ++.|.+++|++.+++
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR-~r~Grv~vLvt~gtr 483 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR-KRKGRVVVLVTEGTR 483 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc-CCCCeEEEEEecCch
Confidence 357999999999999999999999999999999999999999999999999999999999999 589999999999865
Q ss_pred HH
Q 005773 480 SL 481 (678)
Q Consensus 480 ~~ 481 (678)
..
T Consensus 484 de 485 (542)
T COG1111 484 DE 485 (542)
T ss_pred HH
Confidence 43
No 64
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.8e-36 Score=336.40 Aligned_cols=321 Identities=20% Similarity=0.244 Sum_probs=236.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
+|. .|+++|..+++.++.|+ |+.+.||+|||++|++|++...+ .+..|+|++||+.||.|.++++..+..+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al------~G~~v~VvTpt~~LA~qd~e~~~~l~~~ 145 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL------EGKGVHLITVNDYLAKRDAEEMGQVYEF 145 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH------cCCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 466 69999999999998887 99999999999999999986554 3556999999999999999999999999
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccC-----ccCCCCeeEEEEeCCcccc-cC--------C
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-EL--------G 287 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~ll-~~--------g 287 (678)
.+++|+++.|+.+...+... ...++|+|+||++| .++|.... ...+..+.++||||||.|+ +. |
T Consensus 146 lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg 224 (790)
T PRK09200 146 LGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISG 224 (790)
T ss_pred cCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeC
Confidence 99999999999883333332 34589999999999 55555432 2346789999999999954 10 0
Q ss_pred -------hHHHHHHHHHHCC--------------------------------------------------------CC--
Q 005773 288 -------FSAEIHELVRLCP--------------------------------------------------------KR-- 302 (678)
Q Consensus 288 -------f~~~i~~i~~~~~--------------------------------------------------------~~-- 302 (678)
+...+..+...+. ++
T Consensus 225 ~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~d 304 (790)
T PRK09200 225 KPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVD 304 (790)
T ss_pred CCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCc
Confidence 0111111111000 00
Q ss_pred -----------------------------------------------------------ccEEEEEeccChhHHHHHHHh
Q 005773 303 -----------------------------------------------------------RQTMLFSATLTEDVDELIKLS 323 (678)
Q Consensus 303 -----------------------------------------------------------~q~il~SATl~~~~~~l~~~~ 323 (678)
..+.+||+|....-.++...+
T Consensus 305 YiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y 384 (790)
T PRK09200 305 YIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVY 384 (790)
T ss_pred EEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHh
Confidence 145677777765555554433
Q ss_pred cCCCeEEecCCCCCCCCCce-eEEEEEechhhhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhhcCCceeec
Q 005773 324 LTKPLRLSADPSAKRPSTLT-EEVVRIRRMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAEL 400 (678)
Q Consensus 324 ~~~p~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~l 400 (678)
--..+.+ +.. .|.... ..-..+. ....+...+...+.. ..+.++||||+|+..++.++..|...|+++..|
T Consensus 385 ~l~v~~I---Pt~-kp~~r~d~~~~i~~--~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L 458 (790)
T PRK09200 385 NMEVVQI---PTN-RPIIRIDYPDKVFV--TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLL 458 (790)
T ss_pred CCcEEEC---CCC-CCcccccCCCeEEc--CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEe
Confidence 2222211 221 221111 1111111 223444555544433 357899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCC---CCcc-----EEEEcCCCCChhHHHHHHhhcccCCCceEEEE
Q 005773 401 HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI---IGVQ-----TVINYACPRDLTSYVHRVGRTARAGREGYAVT 472 (678)
Q Consensus 401 hg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi---~~v~-----~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~ 472 (678)
||.+.+.++..+...+..| .|+|||++++||+|| ++|. +||+|++|.+...|+||+|||||.|.+|.+++
T Consensus 459 ~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~ 536 (790)
T PRK09200 459 NAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF 536 (790)
T ss_pred cCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE
Confidence 9999998888777777766 699999999999999 6998 99999999999999999999999999999999
Q ss_pred EeeCCcHHH
Q 005773 473 FVTDNDRSL 481 (678)
Q Consensus 473 l~~~~d~~~ 481 (678)
|++..|.-+
T Consensus 537 ~is~eD~l~ 545 (790)
T PRK09200 537 FISLEDDLL 545 (790)
T ss_pred EEcchHHHH
Confidence 999876544
No 65
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=4.6e-36 Score=343.75 Aligned_cols=337 Identities=22% Similarity=0.266 Sum_probs=263.6
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHH
Q 005773 134 RPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213 (678)
Q Consensus 134 ~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~ 213 (678)
+........+|+..++|-|.++|..++.|+|+++.+|||.||+++|+||++ ..++.+|||.|..+|+..
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~---------l~~gitvVISPL~SLm~D-- 319 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPAL---------LLGGVTVVISPLISLMQD-- 319 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccc---------ccCCceEEeccHHHHHHH--
Confidence 344455567899999999999999999999999999999999999999998 234578999999999664
Q ss_pred HHHHHHhhcCCceeEEEecCCChHHHH---HHhc-C--CCCEEEECchHHHHHHhcc-CccCCCC---eeEEEEeCCccc
Q 005773 214 SMIEKIAQFTDIRCCLVVGGLSTKMQE---TALR-S--MPDIVVATPGRMIDHLRNS-MSVDLDD---LAVLILDEADRL 283 (678)
Q Consensus 214 ~~~~~l~~~~~~~v~~~~g~~~~~~~~---~~l~-~--~~dIiv~Tp~~L~~~l~~~-~~~~l~~---i~~lVvDEah~l 283 (678)
++..| ...++....+.++.....+. +.+. + ..+|++.||+.+...-.-. ....+.. +.++||||||++
T Consensus 320 -Qv~~L-~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCV 397 (941)
T KOG0351|consen 320 -QVTHL-SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCV 397 (941)
T ss_pred -HHHhh-hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHh
Confidence 34444 23588888999888775332 2233 3 4689999999875422111 1223444 899999999999
Q ss_pred ccCC--hHHHHHHH---HHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechh-hhhH
Q 005773 284 LELG--FSAEIHEL---VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR-EVNQ 357 (678)
Q Consensus 284 l~~g--f~~~i~~i---~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 357 (678)
+.|| |++.+..+ ....+ ...+|++|||.+..+...+-..++-+..........++ ++. +.+.... ....
T Consensus 398 SqWgHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~-NL~---yeV~~k~~~~~~ 472 (941)
T KOG0351|consen 398 SQWGHDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRP-NLK---YEVSPKTDKDAL 472 (941)
T ss_pred hhhcccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCC-Cce---EEEEeccCccch
Confidence 9999 55554444 33333 37899999999999988776555433222332233333 333 2332222 2333
Q ss_pred HHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC
Q 005773 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (678)
Q Consensus 358 ~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~ 437 (678)
...+.......+...+||||.++.+++++...|...++++..||++|+..+|..+...|..++++|+|||=++++|||.|
T Consensus 473 ~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~ 552 (941)
T KOG0351|consen 473 LDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKP 552 (941)
T ss_pred HHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCC
Confidence 44444455566778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHH
Q 005773 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (678)
Q Consensus 438 ~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~ 488 (678)
+|+.||||.+|.+.+.|.|-+|||||.|....|++|++..|...++.+...
T Consensus 553 DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 553 DVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred ceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999998888777654
No 66
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.4e-34 Score=321.85 Aligned_cols=321 Identities=20% Similarity=0.208 Sum_probs=239.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchh-HHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL-ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l-~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
+|. .|+++|..+.+.++.|+ |+.++||+|||++|.+|++ +.+. +..|+|++||+.||.|.++++..+..
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-------G~~V~VvTpt~~LA~qdae~~~~l~~ 122 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-------GKGVHVVTVNDYLAQRDAEWMGQVYR 122 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-------CCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 455 49999999999888776 9999999999999999995 5542 23589999999999999999999999
Q ss_pred cCCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccC-----ccCCCCeeEEEEeCCccccc---------C
Q 005773 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLLE---------L 286 (678)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~ll~---------~ 286 (678)
+.++++++++|+.+........ .++|+|+||++| .++|+... ...+..+.++||||+|+|+- .
T Consensus 123 ~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiis 200 (745)
T TIGR00963 123 FLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIIS 200 (745)
T ss_pred cCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhc
Confidence 9999999999998876555444 479999999999 99888753 24578899999999999542 0
Q ss_pred C----h---HHHHHHHHHHCC--------------------------------------------------------C--
Q 005773 287 G----F---SAEIHELVRLCP--------------------------------------------------------K-- 301 (678)
Q Consensus 287 g----f---~~~i~~i~~~~~--------------------------------------------------------~-- 301 (678)
| . ......+.+.+. +
T Consensus 201 g~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~ 280 (745)
T TIGR00963 201 GPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDV 280 (745)
T ss_pred CCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCC
Confidence 1 0 000000000000 0
Q ss_pred -----------------------------------------------------------CccEEEEEeccChhHHHHHHH
Q 005773 302 -----------------------------------------------------------RRQTMLFSATLTEDVDELIKL 322 (678)
Q Consensus 302 -----------------------------------------------------------~~q~il~SATl~~~~~~l~~~ 322 (678)
-..+.+||+|...+..++...
T Consensus 281 dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i 360 (745)
T TIGR00963 281 DYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKI 360 (745)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHH
Confidence 014567777776655555544
Q ss_pred hcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHh--hccCCceEEEEeccHHHHHHHHHHHhhcCCceeec
Q 005773 323 SLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLC--SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAEL 400 (678)
Q Consensus 323 ~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~l 400 (678)
+--..+.+....+..+ ....-..+. ....+...+...+ ....+.++||||+|...++.++.+|...|+.+..|
T Consensus 361 Y~l~vv~IPtnkp~~R---~d~~d~i~~--t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~L 435 (745)
T TIGR00963 361 YNLEVVVVPTNRPVIR---KDLSDLVYK--TEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVL 435 (745)
T ss_pred hCCCEEEeCCCCCeee---eeCCCeEEc--CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEe
Confidence 4333222221111111 111111111 1222333333322 23457899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCC-------ccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEE
Q 005773 401 HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG-------VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473 (678)
Q Consensus 401 hg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~-------v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l 473 (678)
|+. +.+|...+..|..+...|+|||++|+||+||+. .-+||+++.|.|...|.|++|||||.|.+|.++.|
T Consensus 436 na~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 436 NAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred eCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 998 889999999999999999999999999999988 55999999999999999999999999999999999
Q ss_pred eeCCcHHHH
Q 005773 474 VTDNDRSLL 482 (678)
Q Consensus 474 ~~~~d~~~l 482 (678)
++..|.-+.
T Consensus 514 ls~eD~l~~ 522 (745)
T TIGR00963 514 LSLEDNLMR 522 (745)
T ss_pred EeccHHHHH
Confidence 999876553
No 67
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=9.9e-36 Score=319.97 Aligned_cols=302 Identities=22% Similarity=0.200 Sum_probs=207.7
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChH------
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK------ 237 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~------ 237 (678)
++++++|||||||++|++|++..+... ...+++|++|+++|+.|+++.+..++.. .++.++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~----~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~ 73 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ----KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMG 73 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC----CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccC
Confidence 589999999999999999999876432 2458999999999999999999986432 344444432210
Q ss_pred ------HHHHHh------cCCCCEEEECchHHHHHHhccCc---cCC--CCeeEEEEeCCcccccCChHHHHHHHHHHCC
Q 005773 238 ------MQETAL------RSMPDIVVATPGRMIDHLRNSMS---VDL--DDLAVLILDEADRLLELGFSAEIHELVRLCP 300 (678)
Q Consensus 238 ------~~~~~l------~~~~dIiv~Tp~~L~~~l~~~~~---~~l--~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~ 300 (678)
...... ...++|+|+||+.++..+..... ..+ -..++|||||||.+..+++.. +..++..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~ 152 (358)
T TIGR01587 74 DSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK 152 (358)
T ss_pred CchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH
Confidence 001111 12367999999999887765211 111 123789999999999865444 444444443
Q ss_pred -CCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhc-cCCceEEEEec
Q 005773 301 -KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK-TFTSKVIIFSG 378 (678)
Q Consensus 301 -~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~vLVF~~ 378 (678)
...|+++||||++..+..+.......+.......... .....+.+..... ....+...+..++.. ..++++||||+
T Consensus 153 ~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~lVf~~ 230 (358)
T TIGR01587 153 DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE-RRFERHRFIKIES-DKVGEISSLERLLEFIKKGGKIAIIVN 230 (358)
T ss_pred HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc-cccccccceeecc-ccccCHHHHHHHHHHhhCCCeEEEEEC
Confidence 5789999999999877766655433221111110000 0011122211111 111222233333322 34689999999
Q ss_pred cHHHHHHHHHHHhhcCC--ceeeccCCCCHHHHHH----HHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCChh
Q 005773 379 TKQAAHRLKILFGLAAL--KAAELHGNLTQAQRLE----ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLT 452 (678)
Q Consensus 379 s~~~~~~l~~~L~~~~~--~~~~lhg~l~~~~R~~----~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~ 452 (678)
|+..++.++..|...+. .+..+||++++.+|.+ +++.|++|...|||||+++++|+||+ +++||++..| +.
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~ 307 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--ID 307 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HH
Confidence 99999999999987765 5999999999999976 48899999999999999999999995 8999999877 78
Q ss_pred HHHHHHhhcccCCCc----eEEEEEeeCCc
Q 005773 453 SYVHRVGRTARAGRE----GYAVTFVTDND 478 (678)
Q Consensus 453 ~yiQr~GRagR~g~~----G~~i~l~~~~d 478 (678)
+|+||+||+||.|+. |.+++|....+
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999999998753 36777765543
No 68
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.2e-34 Score=324.47 Aligned_cols=321 Identities=19% Similarity=0.172 Sum_probs=225.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
+|. .|+++|..++..+.. ..|+.++||+|||++|++|++...+. +..|+||+|++.||.|+++++..++.+
T Consensus 67 lgl-rpydVQlig~l~l~~--G~Iaem~TGeGKTLta~Lpa~l~aL~------g~~V~VVTpn~yLA~Rdae~m~~l~~~ 137 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQ--GNIAEMKTGEGKTLTATMPLYLNALT------GKGAMLVTTNDYLAKRDAEEMGPVYEW 137 (762)
T ss_pred cCC-CccHHHHHHHHHhcC--CceeEecCCcchHHHHHHHHHHHhhc------CCceEEeCCCHHHHHHHHHHHHHHHhh
Confidence 344 455666555555444 47999999999999999998766543 345999999999999999999999999
Q ss_pred CCceeEEEecCCC---hHHHHHHhcCCCCEEEECchHH-HHHHhcc-----CccCCCCeeEEEEeCCcccccC-------
Q 005773 223 TDIRCCLVVGGLS---TKMQETALRSMPDIVVATPGRM-IDHLRNS-----MSVDLDDLAVLILDEADRLLEL------- 286 (678)
Q Consensus 223 ~~~~v~~~~g~~~---~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~-----~~~~l~~i~~lVvDEah~ll~~------- 286 (678)
.|++|++++++.. ..........+++|+|+||++| .++|... ....+..+.++||||||.|+-.
T Consensus 138 LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpli 217 (762)
T TIGR03714 138 LGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLV 217 (762)
T ss_pred cCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCee
Confidence 9999998877622 1222233335799999999999 5655432 1344678999999999996410
Q ss_pred --C-------hHHHHHHHHHHCCC--------------------------------------------------------
Q 005773 287 --G-------FSAEIHELVRLCPK-------------------------------------------------------- 301 (678)
Q Consensus 287 --g-------f~~~i~~i~~~~~~-------------------------------------------------------- 301 (678)
| +...+..+...+..
T Consensus 218 isg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~ 297 (762)
T TIGR03714 218 ISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKR 297 (762)
T ss_pred eeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhc
Confidence 0 00111111111000
Q ss_pred -------------------------------------------------------------CccEEEEEeccChhHHHHH
Q 005773 302 -------------------------------------------------------------RRQTMLFSATLTEDVDELI 320 (678)
Q Consensus 302 -------------------------------------------------------------~~q~il~SATl~~~~~~l~ 320 (678)
-.++.+||+|......++.
T Consensus 298 d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~ 377 (762)
T TIGR03714 298 NKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI 377 (762)
T ss_pred CCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH
Confidence 0245677777765555555
Q ss_pred HHhcCCCeEEecCCCCCCCCCceeE-EEEEechhhhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhhcCCce
Q 005773 321 KLSLTKPLRLSADPSAKRPSTLTEE-VVRIRRMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKA 397 (678)
Q Consensus 321 ~~~~~~p~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~--~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~ 397 (678)
..+ +-++ +.+ +.. .|...... -..+. ....+...+...+.. ..+.++||||+|+..++.+...|...|+++
T Consensus 378 ~iY-~l~v-~~I-Pt~-kp~~r~d~~d~i~~--~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~ 451 (762)
T TIGR03714 378 ETY-SLSV-VKI-PTN-KPIIRIDYPDKIYA--TLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPH 451 (762)
T ss_pred HHh-CCCE-EEc-CCC-CCeeeeeCCCeEEE--CHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCE
Confidence 433 2222 111 111 12111111 01111 223444445444432 456899999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC---------CccEEEEcCCCCChhHHHHHHhhcccCCCce
Q 005773 398 AELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII---------GVQTVINYACPRDLTSYVHRVGRTARAGREG 468 (678)
Q Consensus 398 ~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~---------~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G 468 (678)
..+||.+.+.++..+...|+.| .|+|||++++||+||+ ++.+|++|++|..... +||+|||||.|.+|
T Consensus 452 ~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G 528 (762)
T TIGR03714 452 NLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPG 528 (762)
T ss_pred EEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCce
Confidence 9999999999988777777666 6999999999999999 9999999999988766 99999999999999
Q ss_pred EEEEEeeCCcHHH
Q 005773 469 YAVTFVTDNDRSL 481 (678)
Q Consensus 469 ~~i~l~~~~d~~~ 481 (678)
.+++|++..|.-+
T Consensus 529 ~s~~~is~eD~l~ 541 (762)
T TIGR03714 529 SSQFFVSLEDDLI 541 (762)
T ss_pred eEEEEEccchhhh
Confidence 9999999876544
No 69
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.7e-35 Score=329.55 Aligned_cols=303 Identities=15% Similarity=0.128 Sum_probs=216.6
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 005773 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (678)
Q Consensus 145 ~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~ 224 (678)
...|+++|.++++.++.++++++++|||+|||+++.. +...+... ..+++|||+||++|+.||.+.+.++.....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~----~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~ 186 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLEN----YEGKVLIIVPTTSLVTQMIDDFVDYRLFPR 186 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhc----CCCeEEEEECcHHHHHHHHHHHHHhccccc
Confidence 3479999999999999999999999999999987543 22222222 133799999999999999999998876555
Q ss_pred ceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCcc
Q 005773 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304 (678)
Q Consensus 225 ~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q 304 (678)
..+..+.+|.... ..++|+|+||++|..... ..+.++++|||||||++.... +..++..+++.++
T Consensus 187 ~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~~~ 251 (501)
T PHA02558 187 EAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGKS----LTSIITKLDNCKF 251 (501)
T ss_pred cceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccchh----HHHHHHhhhccce
Confidence 5555566654322 346899999999976432 236789999999999987643 4566667777789
Q ss_pred EEEEEeccChhHHHHH--HHhcCCCeEEecCCCC----CCCCCceeEEEEEe--ch------------------hhhhHH
Q 005773 305 TMLFSATLTEDVDELI--KLSLTKPLRLSADPSA----KRPSTLTEEVVRIR--RM------------------REVNQE 358 (678)
Q Consensus 305 ~il~SATl~~~~~~l~--~~~~~~p~~~~~~~~~----~~~~~l~~~~~~~~--~~------------------~~~~~~ 358 (678)
+++||||+........ ...+. |+...+.... .....+....+.+. .. ....+.
T Consensus 252 ~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn 330 (501)
T PHA02558 252 KFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRN 330 (501)
T ss_pred EEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHH
Confidence 9999999975332111 11122 2222211000 00000000000000 00 000111
Q ss_pred HHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEc-ccccccCC
Q 005773 359 AVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT-DVAARGLD 435 (678)
Q Consensus 359 ~~l~~~~~--~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT-~~~~~GlD 435 (678)
..+..+.. ...+.++||||.+...++.|+..|...+.++..+||++++.+|..+++.|++|...||||| +++++|+|
T Consensus 331 ~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~D 410 (501)
T PHA02558 331 KWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGIS 410 (501)
T ss_pred HHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccc
Confidence 11222211 1235788999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred CCCccEEEEcCCCCChhHHHHHHhhcccCCCce
Q 005773 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGREG 468 (678)
Q Consensus 436 i~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G 468 (678)
+|++++||++.+|.+...|+||+||++|.+..+
T Consensus 411 ip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 411 IKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 999999999999999999999999999976443
No 70
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=4.6e-35 Score=305.19 Aligned_cols=338 Identities=24% Similarity=0.292 Sum_probs=269.6
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~-ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
-...+|.+++.+.+.++..|+..+.|+|..++.. ++.|.|.++.++|+||||++.-++-+..++.. +.+.|+|+
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-----g~KmlfLv 268 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-----GKKMLFLV 268 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-----CCeEEEEe
Confidence 4567889999999999999999999999999986 67899999999999999999889989888754 45689999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHH----HhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 005773 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (678)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~----~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (678)
|..+||+|-|+.|+.-....++.+.+-+|......... .-...+||||+|++.+--+|+.. ..+.++..|||||
T Consensus 269 PLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--~~lgdiGtVVIDE 346 (830)
T COG1202 269 PLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--KDLGDIGTVVIDE 346 (830)
T ss_pred hhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--CcccccceEEeee
Confidence 99999999999999877888998888888765544332 12234799999999997777764 6689999999999
Q ss_pred CcccccCChHHHHH---HHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhh
Q 005773 280 ADRLLELGFSAEIH---ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN 356 (678)
Q Consensus 280 ah~ll~~gf~~~i~---~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 356 (678)
.|.+-+.....++. .-++.+.+..|.|.+|||..+. .++++..--+++.+.- +|..+..+.+.... ...
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~-----RPVplErHlvf~~~--e~e 418 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDE-----RPVPLERHLVFARN--ESE 418 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecC-----CCCChhHeeeeecC--chH
Confidence 99887533222222 2234444589999999999754 4455554445554433 66666665555442 334
Q ss_pred HHHHHHHHh--------hccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcc
Q 005773 357 QEAVLLSLC--------SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428 (678)
Q Consensus 357 ~~~~l~~~~--------~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~ 428 (678)
+..++..++ +..+.+.+|||++|+..|+.++.+|...|+++.++|++|+..+|..+...|.++.+.++|+|-
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 444444443 345568999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCccEEE---EcCCCC-ChhHHHHHHhhcccCC--CceEEEEEeeCC
Q 005773 429 VAARGLDIIGVQTVI---NYACPR-DLTSYVHRVGRTARAG--REGYAVTFVTDN 477 (678)
Q Consensus 429 ~~~~GlDi~~v~~VI---~~d~p~-s~~~yiQr~GRagR~g--~~G~~i~l~~~~ 477 (678)
+++.|+|+|.-.+|+ -++..| ++..|.|+.|||||.+ ..|.+|+++.++
T Consensus 499 AL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 499 ALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999999765544 255556 8999999999999966 569999998775
No 71
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=5.9e-34 Score=335.33 Aligned_cols=325 Identities=25% Similarity=0.308 Sum_probs=236.9
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCc
Q 005773 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225 (678)
Q Consensus 146 ~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~ 225 (678)
-.|+++|..++..++.+ |+++++|||+|||+++++++.+.+. .++.++|||+||++|+.|+.+.+.++....+.
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-----~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 87 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-----KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEE 87 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-----hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCc
Confidence 36899999999988887 9999999999999998888887762 23468999999999999999999987655556
Q ss_pred eeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccE
Q 005773 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305 (678)
Q Consensus 226 ~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~ 305 (678)
.+..+.|+.+... ...+...++|+|+||+.+...+... .+.+.++++|||||||++........+........+.+++
T Consensus 88 ~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~i 165 (773)
T PRK13766 88 KIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAG-RISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLV 165 (773)
T ss_pred eEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcC-CCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEE
Confidence 7788888776654 3344556799999999998777653 5678899999999999987543333344444444556789
Q ss_pred EEEEeccChhHHH---HHHHhcCCCeEEecCCCCC-----CCCCceeEEE-----------------------------E
Q 005773 306 MLFSATLTEDVDE---LIKLSLTKPLRLSADPSAK-----RPSTLTEEVV-----------------------------R 348 (678)
Q Consensus 306 il~SATl~~~~~~---l~~~~~~~p~~~~~~~~~~-----~~~~l~~~~~-----------------------------~ 348 (678)
++||||+...... .........+.+....... .+..+....+ .
T Consensus 166 l~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~ 245 (773)
T PRK13766 166 LGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVI 245 (773)
T ss_pred EEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 9999998644322 2222111111110000000 0000000000 0
Q ss_pred --Ee--------------------c--h----------------------------------------------------
Q 005773 349 --IR--------------------R--M---------------------------------------------------- 352 (678)
Q Consensus 349 --~~--------------------~--~---------------------------------------------------- 352 (678)
.. . .
T Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~ 325 (773)
T PRK13766 246 VSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKR 325 (773)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHH
Confidence 00 0 0
Q ss_pred ------------------hhhhHHHHHHHHhh----ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCC-------
Q 005773 353 ------------------REVNQEAVLLSLCS----KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGN------- 403 (678)
Q Consensus 353 ------------------~~~~~~~~l~~~~~----~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~------- 403 (678)
....+...+..++. ...+.++||||+++..+..|..+|...++.+..+||.
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~ 405 (773)
T PRK13766 326 LVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDK 405 (773)
T ss_pred HHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccC
Confidence 00000111111121 1456899999999999999999999999999999886
Q ss_pred -CCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcH
Q 005773 404 -LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (678)
Q Consensus 404 -l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~ 479 (678)
|++.+|..++..|++|+.+|||||+++++|+|+|++++||+||+|+|+..|+||+||+||.| +|.+++|+..++.
T Consensus 406 ~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ 481 (773)
T PRK13766 406 GMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTR 481 (773)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999976 6999999987764
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=2e-33 Score=299.69 Aligned_cols=293 Identities=18% Similarity=0.195 Sum_probs=201.9
Q ss_pred HHHHHHHHHhcCCC--EEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc----CC
Q 005773 151 IQAACIPLALTGRD--ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF----TD 224 (678)
Q Consensus 151 iQ~~~i~~ll~g~d--vl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~----~~ 224 (678)
+|.++++.+.++++ +++++|||||||.+|++|++.. ..++++++|+++|+.|+++.+..+... .+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~---------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~ 71 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG---------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERD 71 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc---------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 59999999999874 7889999999999999998842 235799999999999999998887643 24
Q ss_pred ceeEEEecCCChHH--------------------HHHHhcCCCCEEEECchHHHHHHhccC---c----cCCCCeeEEEE
Q 005773 225 IRCCLVVGGLSTKM--------------------QETALRSMPDIVVATPGRMIDHLRNSM---S----VDLDDLAVLIL 277 (678)
Q Consensus 225 ~~v~~~~g~~~~~~--------------------~~~~l~~~~dIiv~Tp~~L~~~l~~~~---~----~~l~~i~~lVv 277 (678)
..+..+.|...... ........+.|++|||+.|..++.... . ..+.++++|||
T Consensus 72 ~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 72 VNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred ceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 55555555422110 001113468899999999976654321 1 12578999999
Q ss_pred eCCcccccCChH-----HHHHHHHHHCCCCccEEEEEeccChhHHHHHHHh--cCCCeEEecCCCC----------CCC-
Q 005773 278 DEADRLLELGFS-----AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSA----------KRP- 339 (678)
Q Consensus 278 DEah~ll~~gf~-----~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~--~~~p~~~~~~~~~----------~~~- 339 (678)
||+|.+..++.. .....++...+...+++++|||+++.+...+... +..|+........ ..+
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 231 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKT 231 (357)
T ss_pred ecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccc
Confidence 999998754422 2233344444445799999999999877776654 3444332221100 000
Q ss_pred -------CCceeEEEEEechhhhhHHHHHH----HHhhccCCceEEEEeccHHHHHHHHHHHhhcC--CceeeccCCCCH
Q 005773 340 -------STLTEEVVRIRRMREVNQEAVLL----SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA--LKAAELHGNLTQ 406 (678)
Q Consensus 340 -------~~l~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~--~~~~~lhg~l~~ 406 (678)
+.+.+.+.. ...........+. ..+....++++||||+|+..++.++..|...+ +.+..+||.+++
T Consensus 232 ~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~ 310 (357)
T TIGR03158 232 QSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPK 310 (357)
T ss_pred cccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCH
Confidence 123332222 1111111111111 11222356799999999999999999999764 578899999999
Q ss_pred HHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcc
Q 005773 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTA 462 (678)
Q Consensus 407 ~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRag 462 (678)
.+|.++ ++..|||||++++|||||+.+ +|| ++ |.++..|+||+||+|
T Consensus 311 ~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 311 KDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 998754 478899999999999999987 666 55 889999999999987
No 73
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.8e-33 Score=308.82 Aligned_cols=331 Identities=24% Similarity=0.298 Sum_probs=236.7
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCc
Q 005773 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225 (678)
Q Consensus 146 ~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~ 225 (678)
-.++.||.+.+..+| |+|+|+++|||+|||.++...+++++-..++ .+|++++||+-|+.|....+..++.. .
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~----~KiVF~aP~~pLv~QQ~a~~~~~~~~--~ 133 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK----GKVVFLAPTRPLVNQQIACFSIYLIP--Y 133 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc----ceEEEeeCCchHHHHHHHHHhhccCc--c
Confidence 368999999999999 9999999999999999988888888866544 68999999999999988666655432 4
Q ss_pred eeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc-cCChHHHHHHHHHHCCCCcc
Q 005773 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQ 304 (678)
Q Consensus 226 ~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~i~~~~~~~~q 304 (678)
.+....|+.........+....+|+|+||..|.+.|.......|+.+.++||||||+-. +..+...+..++..-....|
T Consensus 134 ~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~q 213 (746)
T KOG0354|consen 134 SVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQ 213 (746)
T ss_pred cceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhcccc
Confidence 55555666544444445666789999999999999887654457999999999999976 56677777777777666779
Q ss_pred EEEEEeccChhHHHHHHHh---cCC----------------------CeEEe-------------------------cCC
Q 005773 305 TMLFSATLTEDVDELIKLS---LTK----------------------PLRLS-------------------------ADP 334 (678)
Q Consensus 305 ~il~SATl~~~~~~l~~~~---~~~----------------------p~~~~-------------------------~~~ 334 (678)
+|++|||+..+........ +-. |+.+. ...
T Consensus 214 ILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~ 293 (746)
T KOG0354|consen 214 ILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIE 293 (746)
T ss_pred EEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccc
Confidence 9999999985543321110 000 00000 000
Q ss_pred ------CC---------CCCCCc---------------------eeEEEEEec--------------hh-----------
Q 005773 335 ------SA---------KRPSTL---------------------TEEVVRIRR--------------MR----------- 353 (678)
Q Consensus 335 ------~~---------~~~~~l---------------------~~~~~~~~~--------------~~----------- 353 (678)
.. ...++. ....+++.. ..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~ 373 (746)
T KOG0354|consen 294 ISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLI 373 (746)
T ss_pred cccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhh
Confidence 00 000000 000000000 00
Q ss_pred -------------------hhhHHH----HHHHHhhccCCceEEEEeccHHHHHHHHHHHhh-c--CCceeecc------
Q 005773 354 -------------------EVNQEA----VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL-A--ALKAAELH------ 401 (678)
Q Consensus 354 -------------------~~~~~~----~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~-~--~~~~~~lh------ 401 (678)
...+.. .+..........++||||.++..|..|..+|.. . +++...+-
T Consensus 374 ~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~ 453 (746)
T KOG0354|consen 374 RNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKST 453 (746)
T ss_pred HHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccc
Confidence 000000 111122344567999999999999999999973 2 33443333
Q ss_pred --CCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcH
Q 005773 402 --GNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (678)
Q Consensus 402 --g~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~ 479 (678)
.+|++.++.+++++|++|.++|||||+++++||||+.|+.||-||.-.|+...+||+|| ||+ +.|.++++++..+.
T Consensus 454 ~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 454 QSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEV 531 (746)
T ss_pred cccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhH
Confidence 38999999999999999999999999999999999999999999999999999999999 995 58999999985554
Q ss_pred HHHHHH
Q 005773 480 SLLKAI 485 (678)
Q Consensus 480 ~~l~~i 485 (678)
..++..
T Consensus 532 ~~~E~~ 537 (746)
T KOG0354|consen 532 IEFERN 537 (746)
T ss_pred HHHHHH
Confidence 444443
No 74
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=7.9e-33 Score=323.99 Aligned_cols=303 Identities=18% Similarity=0.209 Sum_probs=207.6
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcH----HHHHHHHHHHHHHhhcCCce
Q 005773 151 IQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR----ELAVQVHSMIEKIAQFTDIR 226 (678)
Q Consensus 151 iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr----~La~Q~~~~~~~l~~~~~~~ 226 (678)
.-.+++..+..++.++++|+||||||++ +|.+-.-... ...+.+++..|.| +||.|+.+.+.. ..|-.
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~---g~~g~I~~TQPRRlAArsLA~RVA~El~~---~lG~~ 149 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGR---GVKGLIGHTQPRRLAARTVANRIAEELET---ELGGC 149 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCC---CCCCceeeCCCcHHHHHHHHHHHHHHHhh---hhcce
Confidence 3445666666677788999999999984 6743221111 1223567778865 566666655553 12333
Q ss_pred eEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCc-ccccCChHHH-HHHHHHHCCCCcc
Q 005773 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD-RLLELGFSAE-IHELVRLCPKRRQ 304 (678)
Q Consensus 227 v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah-~ll~~gf~~~-i~~i~~~~~~~~q 304 (678)
|++-+...+ ....+++|+|+|||+|++++... ..++++++||||||| ++++.+|... +..++... +..|
T Consensus 150 VGY~vrf~~------~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r-pdlK 220 (1294)
T PRK11131 150 VGYKVRFND------QVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRR-PDLK 220 (1294)
T ss_pred eceeecCcc------ccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchHHHHHHHhhhcC-CCce
Confidence 333222211 12356899999999999999863 458999999999999 5888887753 33333322 4689
Q ss_pred EEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhh---hhHHHHHHHH---hhccCCceEEEEec
Q 005773 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMRE---VNQEAVLLSL---CSKTFTSKVIIFSG 378 (678)
Q Consensus 305 ~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~---~~~~~~~~vLVF~~ 378 (678)
+|+||||++. ..+...+.+.|+ +.+.... ..+...+........ ......+... +.....+.+|||++
T Consensus 221 vILmSATid~--e~fs~~F~~apv-I~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLp 294 (1294)
T PRK11131 221 VIITSATIDP--ERFSRHFNNAPI-IEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMS 294 (1294)
T ss_pred EEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 9999999975 355555555554 4332211 123333332211110 1111111111 12334678999999
Q ss_pred cHHHHHHHHHHHhhcCCc---eeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcC---------
Q 005773 379 TKQAAHRLKILFGLAALK---AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA--------- 446 (678)
Q Consensus 379 s~~~~~~l~~~L~~~~~~---~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d--------- 446 (678)
+..+++.++..|...++. +..+||+|++.+|..+++. .|..+||||||++++|||||+|++||+++
T Consensus 295 g~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~ 372 (1294)
T PRK11131 295 GEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSY 372 (1294)
T ss_pred CHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccccc
Confidence 999999999999887664 6789999999999999886 47889999999999999999999999986
Q ss_pred ------CCC---ChhHHHHHHhhcccCCCceEEEEEeeCCcH
Q 005773 447 ------CPR---DLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (678)
Q Consensus 447 ------~p~---s~~~yiQr~GRagR~g~~G~~i~l~~~~d~ 479 (678)
+|. |..+|.||+|||||. ++|.||.||++.+.
T Consensus 373 ~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 373 RTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred ccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 343 457899999999998 69999999997654
No 75
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4.9e-33 Score=317.14 Aligned_cols=334 Identities=20% Similarity=0.261 Sum_probs=243.5
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHH
Q 005773 131 NLSRPLLRACEALGYSKPTPIQAACIPLAL-TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (678)
Q Consensus 131 ~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll-~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La 209 (678)
.+...+..-+...|+..+.+.|+.++...+ .++|+|+|+|||||||+++.+.+++.+... +.++++|||+++||
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-----~~k~vYivPlkALa 89 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-----GGKVVYIVPLKALA 89 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-----CCcEEEEeChHHHH
Confidence 477888888888899888888888876654 459999999999999999999999998764 45799999999999
Q ss_pred HHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChH
Q 005773 210 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289 (678)
Q Consensus 210 ~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~ 289 (678)
.+.++.+.+| ...|++|...+|+......+ ...++|+|+||+.+-..+++... .+..+++|||||+|.+.+....
T Consensus 90 ~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 90 EEKYEEFSRL-EELGIRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHHHHHhhhH-HhcCCEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCcccC
Confidence 9999999955 45699999999988755432 35679999999999888887644 6789999999999998865333
Q ss_pred HHHHHH---HHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCC-CCCCCCCceeEEEEEechhh---hhHHHHHH
Q 005773 290 AEIHEL---VRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP-SAKRPSTLTEEVVRIRRMRE---VNQEAVLL 362 (678)
Q Consensus 290 ~~i~~i---~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~-~~~~~~~l~~~~~~~~~~~~---~~~~~~l~ 362 (678)
..+..+ +.......|++.+|||+++ ..+++...-.+++.....+ ...++....+.+........ ........
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~ 243 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLAL 243 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHH
Confidence 333333 3333344899999999985 3344433323333111111 11122223333333221111 11111111
Q ss_pred H--HhhccCCceEEEEeccHHHHHHHHHHHhhc-------------------------------------CCceeeccCC
Q 005773 363 S--LCSKTFTSKVIIFSGTKQAAHRLKILFGLA-------------------------------------ALKAAELHGN 403 (678)
Q Consensus 363 ~--~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~lhg~ 403 (678)
. +.....++.+||||+|+..+...+..+... ...++.+|++
T Consensus 244 ~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAG 323 (766)
T COG1204 244 ELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAG 323 (766)
T ss_pred HHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccC
Confidence 1 122345789999999999998888877520 1246789999
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEE----EcC-----CCCChhHHHHHHhhcccCC--CceEEEE
Q 005773 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI----NYA-----CPRDLTSYVHRVGRTARAG--REGYAVT 472 (678)
Q Consensus 404 l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI----~~d-----~p~s~~~yiQr~GRagR~g--~~G~~i~ 472 (678)
|+.++|.-+.+.|+.|.++||+||..++.|+|+|.-..|| .|+ .+-++.+|+|+.|||||.| .-|.+++
T Consensus 324 L~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i 403 (766)
T COG1204 324 LPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAII 403 (766)
T ss_pred CCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEE
Confidence 9999999999999999999999999999999999766666 566 5557899999999999977 4577877
Q ss_pred Eee
Q 005773 473 FVT 475 (678)
Q Consensus 473 l~~ 475 (678)
+.+
T Consensus 404 ~~~ 406 (766)
T COG1204 404 LAT 406 (766)
T ss_pred Eec
Confidence 773
No 76
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.1e-32 Score=316.31 Aligned_cols=339 Identities=23% Similarity=0.297 Sum_probs=261.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 005773 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (678)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q 211 (678)
....+..++.+.|+..|.++|.+|+..+.+|+|+|++.+||||||.+|++|++++++..+.. ++|+|.||++||+.
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a----~AL~lYPtnALa~D 130 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA----RALLLYPTNALAND 130 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc----cEEEEechhhhHhh
Confidence 34456888888899999999999999999999999999999999999999999999887654 78999999999999
Q ss_pred HHHHHHHHhhcCC--ceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccC---ccCCCCeeEEEEeCCccccc-
Q 005773 212 VHSMIEKIAQFTD--IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM---SVDLDDLAVLILDEADRLLE- 285 (678)
Q Consensus 212 ~~~~~~~l~~~~~--~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~---~~~l~~i~~lVvDEah~ll~- 285 (678)
+.+.+.++....+ +.+..+.|..........+.+.|+||+|||.+|..++.... .+.++++++|||||+|..-.
T Consensus 131 Q~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv 210 (851)
T COG1205 131 QAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV 210 (851)
T ss_pred HHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc
Confidence 9999999887766 77888888888877778889999999999999977554322 23478899999999997542
Q ss_pred CC-----hHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhh-----
Q 005773 286 LG-----FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREV----- 355 (678)
Q Consensus 286 ~g-----f~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~----- 355 (678)
.| ...++..+++..+.+.|+|+.|||+.+.-. ....+........+. ....+......+...+.....
T Consensus 211 ~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e-~~~~l~~~~f~~~v~-~~g~~~~~~~~~~~~p~~~~~~~~~r 288 (851)
T COG1205 211 QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGE-FAEELFGRDFEVPVD-EDGSPRGLRYFVRREPPIRELAESIR 288 (851)
T ss_pred chhHHHHHHHHHHHHHhccCCCceEEEEeccccChHH-HHHHhcCCcceeecc-CCCCCCCceEEEEeCCcchhhhhhcc
Confidence 11 223445555666778999999999976443 444444444444322 222344444443333311100
Q ss_pred -hHHHHHHHHhh--ccCCceEEEEeccHHHHHHHH----HHHhhcC----CceeeccCCCCHHHHHHHHHHHhcCCccEE
Q 005773 356 -NQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLK----ILFGLAA----LKAAELHGNLTQAQRLEALELFRKQHVDFL 424 (678)
Q Consensus 356 -~~~~~l~~~~~--~~~~~~vLVF~~s~~~~~~l~----~~L~~~~----~~~~~lhg~l~~~~R~~~l~~F~~g~~~vL 424 (678)
.....+..+.. -..+-++|+|+.++..++.+. ..+...+ ..+..+++++...+|.++...|+.|+..++
T Consensus 289 ~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~ 368 (851)
T COG1205 289 RSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGV 368 (851)
T ss_pred cchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEE
Confidence 11111112221 123578999999999999996 3333334 568899999999999999999999999999
Q ss_pred EEcccccccCCCCCccEEEEcCCCC-ChhHHHHHHhhcccCCCceEEEEEeeC
Q 005773 425 IATDVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTD 476 (678)
Q Consensus 425 vaT~~~~~GlDi~~v~~VI~~d~p~-s~~~yiQr~GRagR~g~~G~~i~l~~~ 476 (678)
++|++++-|+||.+++.||+++.|. +..++.||.||+||.++.+.+++++..
T Consensus 369 ~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 369 IATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred ecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 9999999999999999999999999 899999999999999877777776653
No 77
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.3e-33 Score=290.32 Aligned_cols=210 Identities=20% Similarity=0.225 Sum_probs=176.6
Q ss_pred CCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccH
Q 005773 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTK 380 (678)
Q Consensus 301 ~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~ 380 (678)
+..|+|++|||+.+.-.+... ++.+...+ +|+++..+.+.+++........+-........+.++||.+-|+
T Consensus 385 ~~~q~i~VSATPg~~E~e~s~---~~vveQiI-----RPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTK 456 (663)
T COG0556 385 KIPQTIYVSATPGDYELEQSG---GNVVEQII-----RPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTK 456 (663)
T ss_pred hcCCEEEEECCCChHHHHhcc---CceeEEee-----cCCCCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehH
Confidence 457999999999876554332 12222233 7888888888888765544443333333345578999999999
Q ss_pred HHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCC-----ChhHHH
Q 005773 381 QAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR-----DLTSYV 455 (678)
Q Consensus 381 ~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~-----s~~~yi 455 (678)
++++.|..||...|+++.++|+++..-+|.+++..++.|.++|||..+++.+|||+|.|.+|.++|... |..+.+
T Consensus 457 kmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLI 536 (663)
T COG0556 457 KMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLI 536 (663)
T ss_pred HHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998765 889999
Q ss_pred HHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccchhhhhhhhHHHHHHHHHHHHHHHHH
Q 005773 456 HRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAA 519 (678)
Q Consensus 456 Qr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (678)
|.+|||+| +-.|.|+++.+.-..++-++|.+..+.+-.+..++..+...+..+.+.+.+.+..
T Consensus 537 QtIGRAAR-N~~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~K~i~d~l~~ 599 (663)
T COG0556 537 QTIGRAAR-NVNGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIKKKIRDILDG 599 (663)
T ss_pred HHHHHHhh-ccCCeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhhhh
Confidence 99999999 6689999999999999999999999999999999999888888877777665543
No 78
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=3e-32 Score=271.03 Aligned_cols=340 Identities=18% Similarity=0.221 Sum_probs=257.6
Q ss_pred CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHH
Q 005773 130 LNLSRPLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (678)
Q Consensus 130 l~l~~~l~~~l~~-~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~L 208 (678)
++.+....+.|+. +...+++|.|..+|+..+.|.|+++..|||.||+++|++|+|-. .+.+|||+|..+|
T Consensus 76 fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---------dg~alvi~plisl 146 (695)
T KOG0353|consen 76 FPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---------DGFALVICPLISL 146 (695)
T ss_pred CCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---------CCceEeechhHHH
Confidence 4555555555543 56788999999999999999999999999999999999999843 4568999999999
Q ss_pred HHHHHHHHHHHhhcCCceeEEEecCCChHHHH---HHh---cCCCCEEEECchHHHHH------HhccCccCCCCeeEEE
Q 005773 209 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE---TAL---RSMPDIVVATPGRMIDH------LRNSMSVDLDDLAVLI 276 (678)
Q Consensus 209 a~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~---~~l---~~~~dIiv~Tp~~L~~~------l~~~~~~~l~~i~~lV 276 (678)
+....-+++++ |+....+....+...-. ..+ .+...+++.||+.+... |.. .+....+.++.
T Consensus 147 medqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek--a~~~~~~~~ia 220 (695)
T KOG0353|consen 147 MEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK--ALEAGFFKLIA 220 (695)
T ss_pred HHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH--HhhcceeEEEe
Confidence 87655556654 67666666655433221 122 22357999999987432 222 34567789999
Q ss_pred EeCCcccccCCh--HHHH--HHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEech
Q 005773 277 LDEADRLLELGF--SAEI--HELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM 352 (678)
Q Consensus 277 vDEah~ll~~gf--~~~i--~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~ 352 (678)
|||+|+..+||+ +..+ ..+++..-+...+|.++||.++.+....+..+.-.-.+.+.....+| ++...+..-+ .
T Consensus 221 idevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~-nl~yev~qkp-~ 298 (695)
T KOG0353|consen 221 IDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRP-NLKYEVRQKP-G 298 (695)
T ss_pred ecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCC-CceeEeeeCC-C
Confidence 999999999994 3333 34566666788899999999998887776555433333333344444 3443333322 2
Q ss_pred hhhhHHHHHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccccc
Q 005773 353 REVNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431 (678)
Q Consensus 353 ~~~~~~~~l~~~~~-~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~ 431 (678)
...+-..-+..+++ ...+...||||-++..++.++..|...|+.+..+|.+|.+.++.-+-+.|..|++.|+|+|-+++
T Consensus 299 n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafg 378 (695)
T KOG0353|consen 299 NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFG 378 (695)
T ss_pred ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeec
Confidence 22222222333333 44466789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEcCCCCChhHHHH-------------------------------------------HHhhcccCCCce
Q 005773 432 RGLDIIGVQTVINYACPRDLTSYVH-------------------------------------------RVGRTARAGREG 468 (678)
Q Consensus 432 ~GlDi~~v~~VI~~d~p~s~~~yiQ-------------------------------------------r~GRagR~g~~G 468 (678)
+|||-|+|++|||..+|.+++.|.| ..||+||.+.+.
T Consensus 379 mgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a 458 (695)
T KOG0353|consen 379 MGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKA 458 (695)
T ss_pred ccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcc
Confidence 9999999999999999999999999 679999999999
Q ss_pred EEEEEeeCCcHHHHHHHH
Q 005773 469 YAVTFVTDNDRSLLKAIA 486 (678)
Q Consensus 469 ~~i~l~~~~d~~~l~~i~ 486 (678)
.||++|.-.|......+.
T Consensus 459 ~cilyy~~~difk~ssmv 476 (695)
T KOG0353|consen 459 DCILYYGFADIFKISSMV 476 (695)
T ss_pred cEEEEechHHHHhHHHHH
Confidence 999999887765544443
No 79
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.8e-31 Score=298.97 Aligned_cols=310 Identities=17% Similarity=0.203 Sum_probs=212.3
Q ss_pred CCcHHHHHHHHHHhc-C--CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 005773 147 KPTPIQAACIPLALT-G--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~-g--~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~ 223 (678)
.|+|+|.+++..++. | +..++++|||+|||++.+ .++..+ ..++|||||+..|+.||.+.+.+++...
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai-~aa~~l--------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV-TAACTV--------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHH-HHHHHh--------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 589999999999884 3 478999999999999854 444443 2358999999999999999999886555
Q ss_pred CceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhcc-------CccCCCCeeEEEEeCCcccccCChHHHHHHHH
Q 005773 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-------MSVDLDDLAVLILDEADRLLELGFSAEIHELV 296 (678)
Q Consensus 224 ~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~-------~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~ 296 (678)
...+..++|+.... ......|+|+|+..+....... ..+.-..|.+||+||||++....| ..++
T Consensus 326 ~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~f----r~il 396 (732)
T TIGR00603 326 DSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMF----RRVL 396 (732)
T ss_pred CceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHH----HHHH
Confidence 56666666653221 1234689999998775322111 012235789999999999865333 3344
Q ss_pred HHCCCCccEEEEEeccChhHH--HHHHHhcCCCeEEecCC-----CCC-CCCCceeEEEEEech----------------
Q 005773 297 RLCPKRRQTMLFSATLTEDVD--ELIKLSLTKPLRLSADP-----SAK-RPSTLTEEVVRIRRM---------------- 352 (678)
Q Consensus 297 ~~~~~~~q~il~SATl~~~~~--~l~~~~~~~p~~~~~~~-----~~~-~~~~l~~~~~~~~~~---------------- 352 (678)
..+. ....+++|||+..+-. ..+...+ .|..+.... ... .+..... +.+.-.
T Consensus 397 ~~l~-a~~RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi~~G~LA~~~~~e--v~v~~t~~~~~~yl~~~~~~k~ 472 (732)
T TIGR00603 397 TIVQ-AHCKLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQKKGFIANVQCAE--VWCPMTPEFYREYLRENSRKRM 472 (732)
T ss_pred HhcC-cCcEEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHHhCCccccceEEE--EEecCCHHHHHHHHHhcchhhh
Confidence 4443 3457999999963211 1122222 233332211 000 0111111 111100
Q ss_pred ----hhhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC-CccEEE
Q 005773 353 ----REVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDFLI 425 (678)
Q Consensus 353 ----~~~~~~~~l~~~~~~--~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g-~~~vLv 425 (678)
....+...+..++.. ..+.++||||.+...+..++..|. +..+||.+++.+|.++++.|+.| .+++||
T Consensus 473 ~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv 547 (732)
T TIGR00603 473 LLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIF 547 (732)
T ss_pred HHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEE
Confidence 001112222223332 257899999999999888888773 46789999999999999999875 789999
Q ss_pred EcccccccCCCCCccEEEEcCCCC-ChhHHHHHHhhcccCCCceEE-------EEEeeCCcHHHHH
Q 005773 426 ATDVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYA-------VTFVTDNDRSLLK 483 (678)
Q Consensus 426 aT~~~~~GlDi~~v~~VI~~d~p~-s~~~yiQr~GRagR~g~~G~~-------i~l~~~~d~~~l~ 483 (678)
+|+++.+|||+|++++||+++.|. |...|+||+||++|.+..|.+ |.|++.++..+.-
T Consensus 548 ~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~ 613 (732)
T TIGR00603 548 LSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYY 613 (732)
T ss_pred EecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHH
Confidence 999999999999999999999985 999999999999998765554 8899988766543
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=8.9e-31 Score=303.25 Aligned_cols=334 Identities=16% Similarity=0.157 Sum_probs=214.4
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 005773 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g--~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~ 224 (678)
.|.|+|..++..++.. ..+|++..+|.|||+.+.+ +++.++... ...++|||||+ .|+.||...+.... +
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAgl-il~~l~~~g---~~~rvLIVvP~-sL~~QW~~El~~kF---~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGM-IIHQQLLTG---RAERVLILVPE-TLQHQWLVEMLRRF---N 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHH-HHHHHHHcC---CCCcEEEEcCH-HHHHHHHHHHHHHh---C
Confidence 4899999998877653 4799999999999988544 444443332 23469999998 78899988776432 4
Q ss_pred ceeEEEecCCChHHHH--HHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCC--hHHHHHHHHHHCC
Q 005773 225 IRCCLVVGGLSTKMQE--TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--FSAEIHELVRLCP 300 (678)
Q Consensus 225 ~~v~~~~g~~~~~~~~--~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g--f~~~i~~i~~~~~ 300 (678)
+.+.++.++....... .......+++|+|++.|...-.....+.-..|++|||||||++.... ....+..+.....
T Consensus 224 l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~ 303 (956)
T PRK04914 224 LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAE 303 (956)
T ss_pred CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhh
Confidence 4444443332111000 01112357999999888642111011223478999999999986311 1122333333333
Q ss_pred CCccEEEEEeccCh-hHHHH-------------------------------HHHhc-CCCe-------------------
Q 005773 301 KRRQTMLFSATLTE-DVDEL-------------------------------IKLSL-TKPL------------------- 328 (678)
Q Consensus 301 ~~~q~il~SATl~~-~~~~l-------------------------------~~~~~-~~p~------------------- 328 (678)
+...++++||||-. ...++ +...+ .++.
T Consensus 304 ~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~ 383 (956)
T PRK04914 304 VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEP 383 (956)
T ss_pred ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhH
Confidence 45578999999852 11110 00000 0000
Q ss_pred --------------------------------EEecCC--CCCCCCCceeEEEEEech----------------------
Q 005773 329 --------------------------------RLSADP--SAKRPSTLTEEVVRIRRM---------------------- 352 (678)
Q Consensus 329 --------------------------------~~~~~~--~~~~~~~l~~~~~~~~~~---------------------- 352 (678)
.+.... ...-|....+ .+.+...
T Consensus 384 l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~-~~~l~~~~~y~~~~~~~~~~~~~~~l~pe 462 (956)
T PRK04914 384 LLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELH-PIPLPLPEQYQTAIKVSLEARARDMLYPE 462 (956)
T ss_pred HHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCcee-EeecCCCHHHHHHHHHhHHHHHHhhcCHH
Confidence 000000 0000000000 0000000
Q ss_pred -------------hhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHh-hcCCceeeccCCCCHHHHHHHHHHHhc
Q 005773 353 -------------REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFG-LAALKAAELHGNLTQAQRLEALELFRK 418 (678)
Q Consensus 353 -------------~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~-~~~~~~~~lhg~l~~~~R~~~l~~F~~ 418 (678)
....+...+..++....+.++||||+++..+..+...|. ..|+.+..+||+|++.+|.++++.|++
T Consensus 463 ~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~ 542 (956)
T PRK04914 463 QIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFAD 542 (956)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhc
Confidence 000122234455555567899999999999999999994 669999999999999999999999998
Q ss_pred C--CccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHh
Q 005773 419 Q--HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (678)
Q Consensus 419 g--~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~ 489 (678)
+ ...|||||+++++|+|++.+++|||||+||||..|+||+||+||.|+.|.+.+++..........|.+.+
T Consensus 543 ~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~ 615 (956)
T PRK04914 543 EEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWY 615 (956)
T ss_pred CCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHH
Confidence 4 5899999999999999999999999999999999999999999999999877776555444455555543
No 81
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.98 E-value=1.1e-30 Score=307.29 Aligned_cols=312 Identities=19% Similarity=0.209 Sum_probs=214.0
Q ss_pred CCCCCcHHHH---HHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 005773 144 GYSKPTPIQA---ACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (678)
Q Consensus 144 g~~~~~~iQ~---~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 220 (678)
.|...-|+.. +++..+..++.+|++|+||||||++ +|.+-.-.. ....++++++.|.|..|..+...+.+..
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~---~~~~~~I~~tQPRRlAA~svA~RvA~el 135 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELG---RGSHGLIGHTQPRRLAARTVAQRIAEEL 135 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcC---CCCCceEecCCccHHHHHHHHHHHHHHh
Confidence 4444344443 4555665667788999999999985 554422111 1223478889999998888776665533
Q ss_pred hcCCceeEEEecCC-ChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCc-ccccCChHHH-HHHHHH
Q 005773 221 QFTDIRCCLVVGGL-STKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD-RLLELGFSAE-IHELVR 297 (678)
Q Consensus 221 ~~~~~~v~~~~g~~-~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah-~ll~~gf~~~-i~~i~~ 297 (678)
+..++..+|.. .... .....+.|+|+|||+|+..+... ..++.+++||||||| ++++.+|... +..++.
T Consensus 136 ---g~~lG~~VGY~vR~~~---~~s~~T~I~~~TdGiLLr~l~~d--~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~ 207 (1283)
T TIGR01967 136 ---GTPLGEKVGYKVRFHD---QVSSNTLVKLMTDGILLAETQQD--RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP 207 (1283)
T ss_pred ---CCCcceEEeeEEcCCc---ccCCCceeeeccccHHHHHhhhC--cccccCcEEEEcCcchhhccchhHHHHHHHHHh
Confidence 33333344421 1111 12345789999999999988763 458999999999999 5888887754 555655
Q ss_pred HCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechh---hhhHHH----HHHHHhhccCC
Q 005773 298 LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR---EVNQEA----VLLSLCSKTFT 370 (678)
Q Consensus 298 ~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~----~l~~~~~~~~~ 370 (678)
.. +..|+|+||||+.. ..+...+...|+ +.+... . ..+...+....... ...... .+..++. ...
T Consensus 208 ~r-pdLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr--~-~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~ 279 (1283)
T TIGR01967 208 RR-PDLKIIITSATIDP--ERFSRHFNNAPI-IEVSGR--T-YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGP 279 (1283)
T ss_pred hC-CCCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCC--c-ccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCC
Confidence 44 47899999999974 455555555554 333221 1 11222222111100 001111 1222222 245
Q ss_pred ceEEEEeccHHHHHHHHHHHhhcC---CceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCC
Q 005773 371 SKVIIFSGTKQAAHRLKILFGLAA---LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447 (678)
Q Consensus 371 ~~vLVF~~s~~~~~~l~~~L~~~~---~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~ 447 (678)
+.+|||+++..+++.+...|...+ +.+..+||.|++.+|.+++..+ +..+|||||+++++|||||+|++||++++
T Consensus 280 GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl 357 (1283)
T TIGR01967 280 GDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGT 357 (1283)
T ss_pred CCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCC
Confidence 789999999999999999998764 4588999999999999997654 34689999999999999999999999995
Q ss_pred CC------------------ChhHHHHHHhhcccCCCceEEEEEeeCCcH
Q 005773 448 PR------------------DLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (678)
Q Consensus 448 p~------------------s~~~yiQr~GRagR~g~~G~~i~l~~~~d~ 479 (678)
+. |..+|.||+|||||.| +|.||.|+++.+.
T Consensus 358 ~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 358 ARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred ccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 43 5579999999999987 9999999997654
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=1.2e-29 Score=290.19 Aligned_cols=319 Identities=19% Similarity=0.223 Sum_probs=218.1
Q ss_pred CCcHHHHHHHHHHhcC---CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 005773 147 KPTPIQAACIPLALTG---RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g---~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~ 223 (678)
.|++.|+++++.++.+ +++++.|+||||||.+|+.++.+.+.. +.++|||+||++|+.|+++.+.+..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~------g~~vLvLvPt~~L~~Q~~~~l~~~f--- 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ------GKQALVLVPEIALTPQMLARFRARF--- 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc------CCeEEEEeCcHHHHHHHHHHHHHHh---
Confidence 5899999999999984 789999999999999998877666532 4579999999999999999888743
Q ss_pred CceeEEEecCCChHHHHH----HhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCCh-----H-HHHH
Q 005773 224 DIRCCLVVGGLSTKMQET----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF-----S-AEIH 293 (678)
Q Consensus 224 ~~~v~~~~g~~~~~~~~~----~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf-----~-~~i~ 293 (678)
+..+..++|+.+...... ...+.++|||+|++.+. ..+.++.+|||||+|....+.. . ..+
T Consensus 215 g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v- 285 (679)
T PRK05580 215 GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL- 285 (679)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHH-
Confidence 678889999887654432 23456899999998763 3467889999999998664321 1 122
Q ss_pred HHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEech-hh----hhHHHHHHHHhhc-
Q 005773 294 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM-RE----VNQEAVLLSLCSK- 367 (678)
Q Consensus 294 ~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~-~~----~~~~~~l~~~~~~- 367 (678)
.++.....+.|+|++|||++.+....+... ....+.............-.++..... .. ......+..+...
T Consensus 286 a~~ra~~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l 363 (679)
T PRK05580 286 AVVRAKLENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL 363 (679)
T ss_pred HHHHhhccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH
Confidence 233444567899999999886655544321 111111111110000001111111100 00 0011111112111
Q ss_pred cCCceEEEEeccH------------------------------------------------------------HHHHHHH
Q 005773 368 TFTSKVIIFSGTK------------------------------------------------------------QAAHRLK 387 (678)
Q Consensus 368 ~~~~~vLVF~~s~------------------------------------------------------------~~~~~l~ 387 (678)
..+.++|||+|.+ ..++++.
T Consensus 364 ~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~ 443 (679)
T PRK05580 364 ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLE 443 (679)
T ss_pred HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHH
Confidence 1244677776642 2455667
Q ss_pred HHHhhc--CCceeeccCCCCH--HHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCC--CC----------h
Q 005773 388 ILFGLA--ALKAAELHGNLTQ--AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP--RD----------L 451 (678)
Q Consensus 388 ~~L~~~--~~~~~~lhg~l~~--~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p--~s----------~ 451 (678)
+.|... +.++..+|+++.+ .++..+++.|++|+.+|||+|+++++|+|+|+|++|+.++.+ .+ .
T Consensus 444 e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~ 523 (679)
T PRK05580 444 EELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTF 523 (679)
T ss_pred HHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHH
Confidence 777665 7889999999874 678999999999999999999999999999999999765544 32 2
Q ss_pred hHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHH
Q 005773 452 TSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485 (678)
Q Consensus 452 ~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i 485 (678)
..|+|++||+||.+..|.+++.....+...+..+
T Consensus 524 ~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 524 QLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred HHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 6799999999999999999988766655555444
No 83
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=8.8e-30 Score=282.01 Aligned_cols=336 Identities=19% Similarity=0.236 Sum_probs=241.1
Q ss_pred HHcCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchhhhhhhhchhHHHhcCCC----CCCCeEEEEEcCcHHHHHHHHHH
Q 005773 141 EALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPK----RIPAIRVLILTPTRELAVQVHSM 215 (678)
Q Consensus 141 ~~~g~~~~~~iQ~~~i~~ll~g-~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~----~~~~~~vLIl~Ptr~La~Q~~~~ 215 (678)
.-++|..+..+|..++|.+... .|.|+|||||||||-.|+|.+|+.+..... .....++++|+|+++||..+++.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 4468889999999999999875 599999999999999999999998875211 13467899999999999998887
Q ss_pred HHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccC--ccCCCCeeEEEEeCCccccc-CCh----
Q 005773 216 IEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM--SVDLDDLAVLILDEADRLLE-LGF---- 288 (678)
Q Consensus 216 ~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~--~~~l~~i~~lVvDEah~ll~-~gf---- 288 (678)
+.+-....|++|..++|.......+ ...++|||+||+..--.-+... ...++.+.+|||||+|.|-+ .|.
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEt 260 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLET 260 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHH
Confidence 7765556699999999987665444 2347999999998733222221 22367899999999997764 331
Q ss_pred -HHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCC-CeEEecCCCCCCCCCceeEEEEEechhhhhHHH-------
Q 005773 289 -SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA------- 359 (678)
Q Consensus 289 -~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~-p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------- 359 (678)
..+...+........+++++|||+|+.. +++...-.+ +.-+..-....+|..+.+.++-...........
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN~e-DvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPNYE-DVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCCHH-HHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 1222233334445678999999998643 333332223 233333334557778888877665441111111
Q ss_pred -HHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcC-----------------------CceeeccCCCCHHHHHHHHHH
Q 005773 360 -VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA-----------------------LKAAELHGNLTQAQRLEALEL 415 (678)
Q Consensus 360 -~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~-----------------------~~~~~lhg~l~~~~R~~~l~~ 415 (678)
.+..+ -..+..++|||.++....+.++.|.... ...+.+|++|...+|..+...
T Consensus 340 ~kv~e~--~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 340 DKVVEF--LQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHH--HHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 11122 2246899999999999999988885321 346788999999999999999
Q ss_pred HhcCCccEEEEcccccccCCCCCccEEE----EcCCCC------ChhHHHHHHhhccc--CCCceEEEEEeeCCcHHHH
Q 005773 416 FRKQHVDFLIATDVAARGLDIIGVQTVI----NYACPR------DLTSYVHRVGRTAR--AGREGYAVTFVTDNDRSLL 482 (678)
Q Consensus 416 F~~g~~~vLvaT~~~~~GlDi~~v~~VI----~~d~p~------s~~~yiQr~GRagR--~g~~G~~i~l~~~~d~~~l 482 (678)
|..|.++||+||..++.|+|+|.--.+| .||.-. .+-..+|..||||| .+..|.++++.+.+-....
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHY 496 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHH
Confidence 9999999999999999999998655444 244333 46678999999999 4577999988776544433
No 84
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2e-28 Score=276.21 Aligned_cols=320 Identities=21% Similarity=0.246 Sum_probs=231.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
+|. .|+++|.-+--.+..| -|+.++||+|||++|.+|++..++. +..|+||+||+.||.|.++++..+..+
T Consensus 79 lg~-~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~------G~~V~VvTpn~yLA~qd~e~m~~l~~~ 149 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS------GRGVHIVTVNDYLAKRDSQWMKPIYEF 149 (896)
T ss_pred cCC-CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc------CCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 344 4788887766666555 4899999999999999999977653 234899999999999999999999999
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccCccCC-----CCeeEEEEeCCcccc-c--------CC
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSVDL-----DDLAVLILDEADRLL-E--------LG 287 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~~~~l-----~~i~~lVvDEah~ll-~--------~g 287 (678)
.|++|++++|+.+...+.... .+||+|+||++| .++|+....+.+ ..+.++||||||.|+ + .|
T Consensus 150 lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg 227 (896)
T PRK13104 150 LGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISG 227 (896)
T ss_pred cCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeC
Confidence 999999999998877665544 589999999999 999988644544 589999999999954 1 00
Q ss_pred -------hHHHHHHHHHHCCC--------------C--------------------------------------------
Q 005773 288 -------FSAEIHELVRLCPK--------------R-------------------------------------------- 302 (678)
Q Consensus 288 -------f~~~i~~i~~~~~~--------------~-------------------------------------------- 302 (678)
....+..+...+.. .
T Consensus 228 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~ 307 (896)
T PRK13104 228 AAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNA 307 (896)
T ss_pred CCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHH
Confidence 00000111100000 0
Q ss_pred ------------------------------------------------------------------------ccEEEEEe
Q 005773 303 ------------------------------------------------------------------------RQTMLFSA 310 (678)
Q Consensus 303 ------------------------------------------------------------------------~q~il~SA 310 (678)
.++-+||+
T Consensus 308 aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTG 387 (896)
T PRK13104 308 ALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTG 387 (896)
T ss_pred HHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCC
Confidence 13445555
Q ss_pred ccChhHHHHHHHhcCCCeEEecCCCCCCCCCce-eEEEEEechhhhhHHHHHHHHh--hccCCceEEEEeccHHHHHHHH
Q 005773 311 TLTEDVDELIKLSLTKPLRLSADPSAKRPSTLT-EEVVRIRRMREVNQEAVLLSLC--SKTFTSKVIIFSGTKQAAHRLK 387 (678)
Q Consensus 311 Tl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~vLVF~~s~~~~~~l~ 387 (678)
|...+..++...+--..+.+.. .+|..-. ..-..+. ....+...+...+ ....+.|+||||+|+..++.++
T Consensus 388 Ta~te~~Ef~~iY~l~Vv~IPt----nkp~~R~d~~d~v~~--t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls 461 (896)
T PRK13104 388 TADTEAYEFQQIYNLEVVVIPT----NRSMIRKDEADLVYL--TQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLS 461 (896)
T ss_pred CChhHHHHHHHHhCCCEEECCC----CCCcceecCCCeEEc--CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHH
Confidence 5554444444433222222211 1111111 0101111 1223333333322 2345789999999999999999
Q ss_pred HHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC------------------------------
Q 005773 388 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII------------------------------ 437 (678)
Q Consensus 388 ~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~------------------------------ 437 (678)
.+|...|+.+..||+.+.+.++..+.+.|+.|. |+|||++|+||+||.
T Consensus 462 ~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (896)
T PRK13104 462 QLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQK 539 (896)
T ss_pred HHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhh
Confidence 999999999999999999999999999999995 999999999999995
Q ss_pred --------CccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHH
Q 005773 438 --------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (678)
Q Consensus 438 --------~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~ 481 (678)
|==+||-...+.|-.--.|-.||+||.|.+|.+..|+|-.|.-+
T Consensus 540 ~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 540 RHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred hhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 22378999999999999999999999999999999999877544
No 85
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.6e-29 Score=271.79 Aligned_cols=331 Identities=19% Similarity=0.167 Sum_probs=242.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 005773 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (678)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q 211 (678)
-+..++++-..+.+ ..-.++++..|..+--+|+||.||||||++....++++.+...+...++.+-|..|+|..|.-
T Consensus 244 R~~EIQ~sR~~LPI---~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaia 320 (1172)
T KOG0926|consen 244 RPAEIQESRLDLPI---VAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIA 320 (1172)
T ss_pred CcHHHHHHHhcCch---hHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHH
Confidence 34555555444422 233456677777777788999999999998777778877776665557799999999999887
Q ss_pred HHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc-c----C
Q 005773 212 VHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-E----L 286 (678)
Q Consensus 212 ~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~----~ 286 (678)
+...+..-....+-.|++.+...+. ......|.++|.|.|+..|.+ +|.|..+++|||||||.-. + .
T Consensus 321 mAkRVa~EL~~~~~eVsYqIRfd~t------i~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTDILi 392 (1172)
T KOG0926|consen 321 MAKRVAFELGVLGSEVSYQIRFDGT------IGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTDILI 392 (1172)
T ss_pred HHHHHHHHhccCccceeEEEEeccc------cCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHHHHH
Confidence 7665543333345566655543221 233467999999999999988 7889999999999999754 2 3
Q ss_pred ChHHHHHHHHHHCCC------CccEEEEEeccCh-hHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHH
Q 005773 287 GFSAEIHELVRLCPK------RRQTMLFSATLTE-DVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEA 359 (678)
Q Consensus 287 gf~~~i~~i~~~~~~------~~q~il~SATl~~-~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 359 (678)
|+..++..+.....+ +.++|+||||+.- +..+...++-..|..+.++. ...+...|+.-+....+......
T Consensus 393 GmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdA--RQfPVsIHF~krT~~DYi~eAfr 470 (1172)
T KOG0926|consen 393 GMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDA--RQFPVSIHFNKRTPDDYIAEAFR 470 (1172)
T ss_pred HHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeec--ccCceEEEeccCCCchHHHHHHH
Confidence 455666666555544 6789999999962 33333344444455555532 23333444444445555666677
Q ss_pred HHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc----------------------------------------------
Q 005773 360 VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA---------------------------------------------- 393 (678)
Q Consensus 360 ~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~---------------------------------------------- 393 (678)
..+.++.+.+.+.+|||+....++..|...|+..
T Consensus 471 Ktc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~e 550 (1172)
T KOG0926|consen 471 KTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDE 550 (1172)
T ss_pred HHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchh
Confidence 7888999999999999999999999998777221
Q ss_pred -----------------------------------------------------CCceeeccCCCCHHHHHHHHHHHhcCC
Q 005773 394 -----------------------------------------------------ALKAAELHGNLTQAQRLEALELFRKQH 420 (678)
Q Consensus 394 -----------------------------------------------------~~~~~~lhg~l~~~~R~~~l~~F~~g~ 420 (678)
.+-|+.|++-++.+.+++++..-..|.
T Consensus 551 d~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~ 630 (1172)
T KOG0926|consen 551 DIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGE 630 (1172)
T ss_pred hhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCc
Confidence 134678899999999999999999999
Q ss_pred ccEEEEcccccccCCCCCccEEEE--------cCCCCChhH----------HHHHHhhcccCCCceEEEEEeeC
Q 005773 421 VDFLIATDVAARGLDIIGVQTVIN--------YACPRDLTS----------YVHRVGRTARAGREGYAVTFVTD 476 (678)
Q Consensus 421 ~~vLvaT~~~~~GlDi~~v~~VI~--------~d~p~s~~~----------yiQr~GRagR~g~~G~~i~l~~~ 476 (678)
.-|+|||++|+..|.||+|++||. ||--..+.. --||+|||||.| +|+||.||+.
T Consensus 631 RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 631 RLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred eEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 999999999999999999999995 555444443 359999999987 9999999885
No 86
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=3.7e-29 Score=246.88 Aligned_cols=202 Identities=49% Similarity=0.786 Sum_probs=183.6
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcH
Q 005773 127 FMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (678)
Q Consensus 127 f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr 206 (678)
|+++++++.+.+.+..+|+..|+++|.++++.++.|+|+++++|||+|||++|++|+++.+..... ..++++||++||+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~-~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK-KDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc-cCCceEEEEcCCH
Confidence 678999999999999999999999999999999999999999999999999999999999877531 2467899999999
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccC
Q 005773 207 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (678)
Q Consensus 207 ~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~ 286 (678)
+|+.|+...+..+....++.+..++|+.........+..+++|+|+||+.|..++.+. ...+.+++++|+||+|.+.+.
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~l~~lIvDE~h~~~~~ 158 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG-KLDLSKVKYLVLDEADRMLDM 158 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CCChhhCCEEEEeChHHhhcc
Confidence 9999999999999887889999999998877766667678999999999999988875 467889999999999999999
Q ss_pred ChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEE
Q 005773 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRL 330 (678)
Q Consensus 287 gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~ 330 (678)
++...+..+++.++..+|++++|||+++.+..++..++.+|+.+
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 159 GFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 99999999999999999999999999999999999999988765
No 87
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=7.3e-28 Score=270.93 Aligned_cols=148 Identities=20% Similarity=0.280 Sum_probs=129.9
Q ss_pred ccCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEE
Q 005773 128 MELNLSRPLLRACE-----ALGYSKP---TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV 199 (678)
Q Consensus 128 ~~l~l~~~l~~~l~-----~~g~~~~---~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~v 199 (678)
+.+.+.+.+.+.+. ..||..| +|+|.++||.++.++++++.++||+|||++|++|++..++.. ..+
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g------~~v 138 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG------KPV 138 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc------CCe
Confidence 45678888888877 6899999 999999999999999999999999999999999999887642 138
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccCccCCC-------C
Q 005773 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSVDLD-------D 271 (678)
Q Consensus 200 LIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~~~~l~-------~ 271 (678)
+||+||++||.|+++++..+..+.++++++++||.+...+...+ .++|+|+||++| .++++.. .+.++ .
T Consensus 139 ~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~-~~~~~~~~~vqr~ 215 (970)
T PRK12899 139 HLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDN-SIATRKEEQVGRG 215 (970)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCC-CCCcCHHHhhccc
Confidence 99999999999999999999999999999999999988776655 489999999999 9999875 23333 5
Q ss_pred eeEEEEeCCcccc
Q 005773 272 LAVLILDEADRLL 284 (678)
Q Consensus 272 i~~lVvDEah~ll 284 (678)
+.++||||||.|+
T Consensus 216 ~~~~IIDEADsmL 228 (970)
T PRK12899 216 FYFAIIDEVDSIL 228 (970)
T ss_pred ccEEEEechhhhh
Confidence 6899999999975
No 88
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.97 E-value=1.3e-28 Score=264.77 Aligned_cols=316 Identities=19% Similarity=0.255 Sum_probs=224.6
Q ss_pred CCcHHHHHHHHHHhc----CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 147 KPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~----g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
.++++|.+.++|+.+ |-++|++..+|.|||++ .|.+|..+...... ++..||+||...|.+ |.+.+.+|+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~~--~GPfLVi~P~StL~N-W~~Ef~rf~-- 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKGI--PGPFLVIAPKSTLDN-WMNEFKRFT-- 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcCC--CCCeEEEeeHhhHHH-HHHHHHHhC--
Confidence 589999999999875 67899999999999998 67788777664432 345799999999865 555666665
Q ss_pred CCceeEEEecCCChHHH--H-HHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHC
Q 005773 223 TDIRCCLVVGGLSTKMQ--E-TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~--~-~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~ 299 (678)
+++++.+++|....... . ....+..+|+|||++..+..-. .+.--.|+++||||||+|-+. ...+..+++.+
T Consensus 241 P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~---~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f 315 (971)
T KOG0385|consen 241 PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS---FLKKFNWRYLVIDEAHRIKNE--KSKLSKILREF 315 (971)
T ss_pred CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH---HHhcCCceEEEechhhhhcch--hhHHHHHHHHh
Confidence 57888888887532221 1 1233468999999999865421 233447999999999998873 34445555555
Q ss_pred CCCccEEEEEeccC-hhHHHH-----------------------------------------------------------
Q 005773 300 PKRRQTMLFSATLT-EDVDEL----------------------------------------------------------- 319 (678)
Q Consensus 300 ~~~~q~il~SATl~-~~~~~l----------------------------------------------------------- 319 (678)
... ..+++|+|+- +++.++
T Consensus 316 ~~~-nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLpp 394 (971)
T KOG0385|consen 316 KTD-NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPP 394 (971)
T ss_pred ccc-ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCC
Confidence 433 2456666643 222221
Q ss_pred ----------------------------------------------HHHhcCCCeEEecCCCCCCCCCceeEEEEEechh
Q 005773 320 ----------------------------------------------IKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 353 (678)
Q Consensus 320 ----------------------------------------------~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (678)
++..|++|..+...... .|.....+. ..
T Consensus 395 KkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg-~pyttdehL-----v~ 468 (971)
T KOG0385|consen 395 KKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG-PPYTTDEHL-----VT 468 (971)
T ss_pred cceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC-CCCCcchHH-----Hh
Confidence 12223333222221111 111111110 11
Q ss_pred hhhHHHHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC---ccEEEEcc
Q 005773 354 EVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH---VDFLIATD 428 (678)
Q Consensus 354 ~~~~~~~l~~~~~--~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~---~~vLvaT~ 428 (678)
...+..+|..++. ...+++||||.+...+.+.|..|+...++.++.|.|.++-++|..+++.|+... +-+|++|.
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 2233334444443 335789999999999999999999999999999999999999999999998654 45899999
Q ss_pred cccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCc--eEEEEEeeCCcHH
Q 005773 429 VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE--GYAVTFVTDNDRS 480 (678)
Q Consensus 429 ~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~--G~~i~l~~~~d~~ 480 (678)
+++.|||+..+++||.||..|||+..+|.+.||+|+|+. ..||.|++.+...
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 999999999999999999999999999999999999964 6677778887543
No 89
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.6e-27 Score=261.16 Aligned_cols=327 Identities=18% Similarity=0.197 Sum_probs=238.0
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 140 CEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 140 l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
+..++|. |...|++||-++..|..|+++|+|.+|||+++-.++.-.- ....++++.+|-++|.+|-++.|+.-
T Consensus 291 a~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq------~h~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 291 ALIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ------KHMTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred HhhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH------hhccceEecchhhhhccchHHHHHHh
Confidence 3445675 9999999999999999999999999999987544443221 23567999999999999999888874
Q ss_pred hhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHC
Q 005773 220 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (678)
Q Consensus 220 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~ 299 (678)
.. .+++++|.... ...+.++|+|.+.|..+|.++.+ .++++++||+||+|.+.+....-.+.+++-.+
T Consensus 364 F~----DvgLlTGDvqi-------nPeAsCLIMTTEILRsMLYrgad-liRDvE~VIFDEVHYiND~eRGvVWEEViIMl 431 (1248)
T KOG0947|consen 364 FG----DVGLLTGDVQI-------NPEASCLIMTTEILRSMLYRGAD-LIRDVEFVIFDEVHYINDVERGVVWEEVIIML 431 (1248)
T ss_pred cc----ccceeecceee-------CCCcceEeehHHHHHHHHhcccc-hhhccceEEEeeeeecccccccccceeeeeec
Confidence 32 23477776543 34467999999999999988643 37889999999999999887778889999999
Q ss_pred CCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhh-------------------------
Q 005773 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMRE------------------------- 354 (678)
Q Consensus 300 ~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------------- 354 (678)
|+..++|++|||.|+...-.-+..-.+.-.+.+.....+|..+.+.+..-.....
T Consensus 432 P~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak 511 (1248)
T KOG0947|consen 432 PRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAK 511 (1248)
T ss_pred cccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccc
Confidence 9999999999999876543322222222223333344556555555432111000
Q ss_pred -------------------------------------hh---HHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcC
Q 005773 355 -------------------------------------VN---QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA 394 (678)
Q Consensus 355 -------------------------------------~~---~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~ 394 (678)
.. ....+...+....--|+||||-++.-|+..+++|...+
T Consensus 512 ~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~n 591 (1248)
T KOG0947|consen 512 FVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLN 591 (1248)
T ss_pred ccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccC
Confidence 00 01111222222233589999999999999999884322
Q ss_pred ---------------------------------------CceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCC
Q 005773 395 ---------------------------------------LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLD 435 (678)
Q Consensus 395 ---------------------------------------~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlD 435 (678)
-.++++||++-+--+.-+.-.|..|-++||+||..+++|+|
T Consensus 592 L~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVN 671 (1248)
T KOG0947|consen 592 LTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVN 671 (1248)
T ss_pred cccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcC
Confidence 24678999999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCC---------ChhHHHHHHhhcccCC--CceEEEEEeeCC--cHHHHHHHH
Q 005773 436 IIGVQTVINYACPR---------DLTSYVHRVGRTARAG--REGYAVTFVTDN--DRSLLKAIA 486 (678)
Q Consensus 436 i~~v~~VI~~d~p~---------s~~~yiQr~GRagR~g--~~G~~i~l~~~~--d~~~l~~i~ 486 (678)
.|.-.+|+ -.+-+ +|-.|.|++|||||.| ..|.++++.... +...++.+.
T Consensus 672 MPARtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li 734 (1248)
T KOG0947|consen 672 MPARTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLI 734 (1248)
T ss_pred CCceeEEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHh
Confidence 99665555 22222 6889999999999988 568888887654 444454443
No 90
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.9e-27 Score=266.78 Aligned_cols=319 Identities=20% Similarity=0.225 Sum_probs=237.4
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchh-HHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTL-ERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l-~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
+|. .|+++|--+.-.+..|+ |+.+.||+|||+++.+|++ +.+. +..|-|++||..||.|.++++..+..
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~-------G~~V~IvTpn~yLA~rd~e~~~~l~~ 147 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT-------GKGVHVVTVNDYLAKRDAEWMGPLYE 147 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc-------CCCEEEEecCHHHHHHHHHHHHHHHh
Confidence 455 48899988877776664 8999999999999999996 5552 22477999999999999999999999
Q ss_pred cCCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccCcc-----CCCCeeEEEEeCCcccc-cC--------
Q 005773 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLL-EL-------- 286 (678)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~~~-----~l~~i~~lVvDEah~ll-~~-------- 286 (678)
+.|++|++++|+.+...+.... .++|+|+||++| .++|++.... .+..+.++||||||.|+ +.
T Consensus 148 ~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiS 225 (830)
T PRK12904 148 FLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIIS 225 (830)
T ss_pred hcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeE
Confidence 9999999999998888776664 389999999999 9999875422 36788999999999954 10
Q ss_pred C-------hHHHHHHHHHHCCC----------------------------------------------------------
Q 005773 287 G-------FSAEIHELVRLCPK---------------------------------------------------------- 301 (678)
Q Consensus 287 g-------f~~~i~~i~~~~~~---------------------------------------------------------- 301 (678)
| ....+..+...+..
T Consensus 226 g~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~ 305 (830)
T PRK12904 226 GPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDV 305 (830)
T ss_pred CCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCC
Confidence 0 11111111111100
Q ss_pred -----------------------------------------------------------CccEEEEEeccChhHHHHHHH
Q 005773 302 -----------------------------------------------------------RRQTMLFSATLTEDVDELIKL 322 (678)
Q Consensus 302 -----------------------------------------------------------~~q~il~SATl~~~~~~l~~~ 322 (678)
-.++.+||+|...+..++...
T Consensus 306 dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i 385 (830)
T PRK12904 306 DYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREI 385 (830)
T ss_pred cEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHH
Confidence 014567777776665555554
Q ss_pred hcCCCeEEecCCCCCCCCCcee-EEEEEechhhhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhhcCCceee
Q 005773 323 SLTKPLRLSADPSAKRPSTLTE-EVVRIRRMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 399 (678)
Q Consensus 323 ~~~~p~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~--~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~ 399 (678)
+--..+.+.. . .|..-.. .-..+. ....+...+...+.. ..+.++||||+|...++.++.+|...++++..
T Consensus 386 Y~l~vv~IPt---n-kp~~r~d~~d~i~~--t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~v 459 (830)
T PRK12904 386 YNLDVVVIPT---N-RPMIRIDHPDLIYK--TEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNV 459 (830)
T ss_pred hCCCEEEcCC---C-CCeeeeeCCCeEEE--CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEe
Confidence 4333222221 1 1211111 111111 223444455555433 45789999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCc--------------------------------------cE
Q 005773 400 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV--------------------------------------QT 441 (678)
Q Consensus 400 lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v--------------------------------------~~ 441 (678)
||+. +.+|...+..|..+...|+|||++|+||+||+=- =|
T Consensus 460 Lnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLh 537 (830)
T PRK12904 460 LNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLH 537 (830)
T ss_pred ccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCE
Confidence 9995 8899999999999999999999999999999532 37
Q ss_pred EEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHH
Q 005773 442 VINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (678)
Q Consensus 442 VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~ 481 (678)
||-...|.|..--.|-.||+||.|.+|.+..|++-.|.-+
T Consensus 538 VigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 538 VIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred EEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 9999999999999999999999999999999999877544
No 91
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=8.4e-28 Score=279.33 Aligned_cols=329 Identities=18% Similarity=0.229 Sum_probs=221.3
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 147 KPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll----~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
.+.++|..++.+++ +|.++|++..||.|||++ .+.++..+..... ...++|||||. ++..||.+.+.+++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQ-aIalL~~L~~~~~--~~gp~LIVvP~-SlL~nW~~Ei~kw~-- 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQ-TISLLGYLHEYRG--ITGPHMVVAPK-STLGNWMNEIRRFC-- 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHH-HHHHHHHHHHhcC--CCCCEEEEeCh-HHHHHHHHHHHHHC--
Confidence 68999999999986 478899999999999997 4556655543222 23458999997 55677888888876
Q ss_pred CCceeEEEecCCChHHHH--H-HhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHC
Q 005773 223 TDIRCCLVVGGLSTKMQE--T-ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~--~-~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~ 299 (678)
+.+++..++|........ . .....++|+|+|++.+...... +.--.|.+|||||||++-+. .......+..+
T Consensus 243 p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L 317 (1033)
T PLN03142 243 PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLF 317 (1033)
T ss_pred CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCH--HHHHHHHHHHh
Confidence 356667777654322211 1 1234579999999998765432 22336889999999999873 33444555555
Q ss_pred CCCccEEEEEeccCh-hHHHHHHHh-cCCCeEE----------------------------------ec---CCCCCCCC
Q 005773 300 PKRRQTMLFSATLTE-DVDELIKLS-LTKPLRL----------------------------------SA---DPSAKRPS 340 (678)
Q Consensus 300 ~~~~q~il~SATl~~-~~~~l~~~~-~~~p~~~----------------------------------~~---~~~~~~~~ 340 (678)
. ....+++|||+-. .+.++..+. +-.|-.+ .. ......|+
T Consensus 318 ~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPp 396 (1033)
T PLN03142 318 S-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPP 396 (1033)
T ss_pred h-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCC
Confidence 4 3446899999852 222221110 0001000 00 00000111
Q ss_pred CceeEEEEEec------------------------------------------------------------hhhhhHHHH
Q 005773 341 TLTEEVVRIRR------------------------------------------------------------MREVNQEAV 360 (678)
Q Consensus 341 ~l~~~~~~~~~------------------------------------------------------------~~~~~~~~~ 360 (678)
. ....+.+.- .....+...
T Consensus 397 K-~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 397 K-KETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred c-eeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 1 111111110 000111222
Q ss_pred HHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC---CccEEEEcccccccCC
Q 005773 361 LLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ---HVDFLIATDVAARGLD 435 (678)
Q Consensus 361 l~~~~~--~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g---~~~vLvaT~~~~~GlD 435 (678)
+..++. ...+.+||||+.....+..|..+|...++.+..|||+++..+|..++..|+.. .+-+|++|.+++.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 222222 22467999999999999999999999999999999999999999999999863 3457999999999999
Q ss_pred CCCccEEEEcCCCCChhHHHHHHhhcccCCCc--eEEEEEeeCCc--HHHHHHHHHH
Q 005773 436 IIGVQTVINYACPRDLTSYVHRVGRTARAGRE--GYAVTFVTDND--RSLLKAIAKR 488 (678)
Q Consensus 436 i~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~--G~~i~l~~~~d--~~~l~~i~~~ 488 (678)
++.+++||+||+||||..+.|++||++|.|+. -.+|.|++.+. ..++....++
T Consensus 556 Lt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~K 612 (1033)
T PLN03142 556 LATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKK 612 (1033)
T ss_pred hhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999976 45666777764 4455444433
No 92
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=4e-27 Score=264.70 Aligned_cols=320 Identities=20% Similarity=0.245 Sum_probs=229.0
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
+|. .|+++|.-+.-.+..|+ |+.+.||+|||++..+|++-..+. +..|-|++||--||.|-++++..+..+
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~------G~~v~vvT~neyLA~Rd~e~~~~~~~~ 147 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT------GKGVHVVTVNEYLSSRDATEMGELYRW 147 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc------CCCeEEEeccHHHHHhhHHHHHHHHHh
Confidence 454 48999988877777776 999999999999999998777643 445899999999999999999999999
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccCc-----cCCCCeeEEEEeCCcccc-c--------CC
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMS-----VDLDDLAVLILDEADRLL-E--------LG 287 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~~-----~~l~~i~~lVvDEah~ll-~--------~g 287 (678)
.|++|+++.++.+........ .+||+++|..-| .++|+.... .....+.+.||||+|.++ + .|
T Consensus 148 LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg 225 (796)
T PRK12906 148 LGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISG 225 (796)
T ss_pred cCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCC
Confidence 999999999987777665544 479999998665 344544321 124567899999999854 1 00
Q ss_pred -------hHHHHHHHHHHCC------------------------------------------------------------
Q 005773 288 -------FSAEIHELVRLCP------------------------------------------------------------ 300 (678)
Q Consensus 288 -------f~~~i~~i~~~~~------------------------------------------------------------ 300 (678)
+...+..+...+.
T Consensus 226 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 305 (796)
T PRK12906 226 QAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQAL 305 (796)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHH
Confidence 0000111100000
Q ss_pred -------CC-------------------------------------------------------------ccEEEEEecc
Q 005773 301 -------KR-------------------------------------------------------------RQTMLFSATL 312 (678)
Q Consensus 301 -------~~-------------------------------------------------------------~q~il~SATl 312 (678)
++ .++.+||+|.
T Consensus 306 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa 385 (796)
T PRK12906 306 RANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTA 385 (796)
T ss_pred HHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCC
Confidence 00 1345666666
Q ss_pred ChhHHHHHHHhcCCCeEEecCCCCCCCCCce-eEEEEEechhhhhHHHHHHHHhh--ccCCceEEEEeccHHHHHHHHHH
Q 005773 313 TEDVDELIKLSLTKPLRLSADPSAKRPSTLT-EEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKIL 389 (678)
Q Consensus 313 ~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vLVF~~s~~~~~~l~~~ 389 (678)
..+..++...+--..+.+ |. ..|.... ..-..+. ....+...+...+. ...+.++||||+|+..++.++..
T Consensus 386 ~~e~~Ef~~iY~l~vv~I---Pt-nkp~~r~d~~d~i~~--t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~ 459 (796)
T PRK12906 386 KTEEEEFREIYNMEVITI---PT-NRPVIRKDSPDLLYP--TLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHL 459 (796)
T ss_pred HHHHHHHHHHhCCCEEEc---CC-CCCeeeeeCCCeEEc--CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHH
Confidence 554444443332221111 11 1221110 0101111 12334444444442 33678999999999999999999
Q ss_pred HhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC---Ccc-----EEEEcCCCCChhHHHHHHhhc
Q 005773 390 FGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII---GVQ-----TVINYACPRDLTSYVHRVGRT 461 (678)
Q Consensus 390 L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~---~v~-----~VI~~d~p~s~~~yiQr~GRa 461 (678)
|...++++..||+.+.+.++..+...++.|. |+|||++|+||+||+ +|. +||+++.|.|...|.|++|||
T Consensus 460 L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRt 537 (796)
T PRK12906 460 LDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRS 537 (796)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhh
Confidence 9999999999999999888888887777776 999999999999994 899 999999999999999999999
Q ss_pred ccCCCceEEEEEeeCCcHHH
Q 005773 462 ARAGREGYAVTFVTDNDRSL 481 (678)
Q Consensus 462 gR~g~~G~~i~l~~~~d~~~ 481 (678)
||.|.+|.+..|++..|.-+
T Consensus 538 GRqG~~G~s~~~~sleD~l~ 557 (796)
T PRK12906 538 GRQGDPGSSRFYLSLEDDLM 557 (796)
T ss_pred ccCCCCcceEEEEeccchHH
Confidence 99999999999999887544
No 93
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=1.5e-27 Score=274.89 Aligned_cols=314 Identities=20% Similarity=0.214 Sum_probs=204.6
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc--
Q 005773 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-- 222 (678)
Q Consensus 145 ~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~-- 222 (678)
...|+|+|+.+......+..+|+.+|||+|||.++++.+ ..+.... ...+++|.+||+++++|+++.+.++...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A-~~l~~~~---~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYA-WRLIDQG---LADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHH-HHHHHhC---CCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 346999999886554456678999999999999865544 4444322 2357999999999999999998875442
Q ss_pred CCceeEEEecCCChHHHH---------------------HHhc---C---CCCEEEECchHHHHHHhccCccCCCC----
Q 005773 223 TDIRCCLVVGGLSTKMQE---------------------TALR---S---MPDIVVATPGRMIDHLRNSMSVDLDD---- 271 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~---------------------~~l~---~---~~dIiv~Tp~~L~~~l~~~~~~~l~~---- 271 (678)
....+.+.+|........ ..+. + ...|+|+|+..++..+...+...+..
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 245667777654322110 0111 1 26899999999876554332222222
Q ss_pred eeEEEEeCCcccccCChHHHHHHHHHHC-CCCccEEEEEeccChhHHHHHHHhcCC----------CeEEecCCCCC---
Q 005773 272 LAVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTK----------PLRLSADPSAK--- 337 (678)
Q Consensus 272 i~~lVvDEah~ll~~gf~~~i~~i~~~~-~~~~q~il~SATl~~~~~~l~~~~~~~----------p~~~~~~~~~~--- 337 (678)
-++|||||+|.+-.. +...+..+++.+ .....+|+||||+|......+...+.. |..........
T Consensus 440 ~svvIiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~ 518 (878)
T PRK09694 440 RSVLIVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRF 518 (878)
T ss_pred cCeEEEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceee
Confidence 248999999986432 333444444443 235679999999998776544332211 10000000000
Q ss_pred ----CCCC-ceeEEEEEech--hh-hhHHHHHHHHhhc-cCCceEEEEeccHHHHHHHHHHHhhcC---CceeeccCCCC
Q 005773 338 ----RPST-LTEEVVRIRRM--RE-VNQEAVLLSLCSK-TFTSKVIIFSGTKQAAHRLKILFGLAA---LKAAELHGNLT 405 (678)
Q Consensus 338 ----~~~~-l~~~~~~~~~~--~~-~~~~~~l~~~~~~-~~~~~vLVF~~s~~~~~~l~~~L~~~~---~~~~~lhg~l~ 405 (678)
.+.. -....+.+... .. ......+..+... ..++++||||||+..+..++..|...+ ..+..+||.++
T Consensus 519 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~ 598 (878)
T PRK09694 519 DLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT 598 (878)
T ss_pred eccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 0000 00111222111 10 1112233333332 346789999999999999999998764 67999999999
Q ss_pred HHHH----HHHHHHH-hcCC---ccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCC
Q 005773 406 QAQR----LEALELF-RKQH---VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466 (678)
Q Consensus 406 ~~~R----~~~l~~F-~~g~---~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~ 466 (678)
..+| .++++.| ++|+ ..|||||+++++|||| ++++||....| ...|+||+||+||.+.
T Consensus 599 ~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 599 LNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999 4567788 6666 4699999999999999 68999999888 7899999999999775
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=1.2e-27 Score=264.70 Aligned_cols=300 Identities=17% Similarity=0.176 Sum_probs=196.0
Q ss_pred EEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHH---HH
Q 005773 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE---TA 242 (678)
Q Consensus 166 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~---~~ 242 (678)
++.|+||||||.+|+..+.+. +.. +.++||++|+++|+.|+++.+++.. +..+..++++.+..... ..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~~-----g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LAL-----GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HHc-----CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHH
Confidence 478999999999985554433 332 4479999999999999999988743 56788888887765442 22
Q ss_pred -hcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCC-----hH-HHHHHHHHHCCCCccEEEEEeccChh
Q 005773 243 -LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-----FS-AEIHELVRLCPKRRQTMLFSATLTED 315 (678)
Q Consensus 243 -l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g-----f~-~~i~~i~~~~~~~~q~il~SATl~~~ 315 (678)
..+.++|||+|+..+. ..+.++++|||||+|....++ |. ..+. ++.....+.++|++|||++.+
T Consensus 72 ~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a-~~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 72 VKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVA-VYRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHH-HHHHHhcCCCEEEEeCCCCHH
Confidence 2346799999998763 246788999999999876433 11 1222 223334578899999998865
Q ss_pred HHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechh--hhhHHHHHHHHhhc-cCCceEEEEeccHHH----------
Q 005773 316 VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR--EVNQEAVLLSLCSK-TFTSKVIIFSGTKQA---------- 382 (678)
Q Consensus 316 ~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~~-~~~~~vLVF~~s~~~---------- 382 (678)
....+.. .....+...............++...... .......+..+... ..+.++|||+|++.-
T Consensus 143 s~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg 220 (505)
T TIGR00595 143 SYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCG 220 (505)
T ss_pred HHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCc
Confidence 5444322 11111111110000000111112111110 00111122222221 235689999776532
Q ss_pred --------------------------------------------------HHHHHHHHhhc--CCceeeccCCCCHHHH-
Q 005773 383 --------------------------------------------------AHRLKILFGLA--ALKAAELHGNLTQAQR- 409 (678)
Q Consensus 383 --------------------------------------------------~~~l~~~L~~~--~~~~~~lhg~l~~~~R- 409 (678)
.+++.+.|... +.++..+|+++++..+
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccH
Confidence 46777777765 7789999999987766
Q ss_pred -HHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCC------------ChhHHHHHHhhcccCCCceEEEEEeeC
Q 005773 410 -LEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR------------DLTSYVHRVGRTARAGREGYAVTFVTD 476 (678)
Q Consensus 410 -~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~------------s~~~yiQr~GRagR~g~~G~~i~l~~~ 476 (678)
..+++.|++|+.+|||+|+++++|+|+|+|++|+.++.+. ..+.|+|++||+||.+..|.+++....
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 8999999999999999999999999999999986444432 246789999999999999999976654
Q ss_pred CcHHHHHHH
Q 005773 477 NDRSLLKAI 485 (678)
Q Consensus 477 ~d~~~l~~i 485 (678)
.+...+..+
T Consensus 381 p~~~~~~~~ 389 (505)
T TIGR00595 381 PNHPAIQAA 389 (505)
T ss_pred CCCHHHHHH
Confidence 444444433
No 95
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1.6e-26 Score=250.70 Aligned_cols=323 Identities=22% Similarity=0.273 Sum_probs=237.5
Q ss_pred CCCHHH-HHHHHHcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 131 NLSRPL-LRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 131 ~l~~~l-~~~l~~~g~~~~~~iQ~~~i~~ll~g------~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
..+..+ .+.+..++|. ||..|+.++.-|... -+-+++|.-|||||+++++.++..+ ..+.++...+
T Consensus 246 ~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai------~~G~Q~ALMA 318 (677)
T COG1200 246 PANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI------EAGYQAALMA 318 (677)
T ss_pred CccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH------HcCCeeEEec
Confidence 344444 4455778887 999999999998863 3678999999999999999999887 3456789999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 005773 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (678)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (678)
||--||.|.++.+.++....+++|..++|..........+ .+..+|||+|-.-+ +. .+.+.++.++|+||
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi----Qd--~V~F~~LgLVIiDE 392 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI----QD--KVEFHNLGLVIIDE 392 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh----hc--ceeecceeEEEEec
Confidence 9999999999999999999999999999998766655433 34589999995443 22 56788999999999
Q ss_pred CcccccCChHHHHHHHHHHCCC-CccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHH
Q 005773 280 ADRLLELGFSAEIHELVRLCPK-RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358 (678)
Q Consensus 280 ah~ll~~gf~~~i~~i~~~~~~-~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (678)
=|+ |.-.-...+..-.. .+.+++||||+-|....+....--+.-.+.--+....| +.-..+. .....
T Consensus 393 QHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkp--I~T~~i~-----~~~~~ 460 (677)
T COG1200 393 QHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKP--ITTVVIP-----HERRP 460 (677)
T ss_pred ccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCc--eEEEEec-----cccHH
Confidence 999 44333333433334 67899999999876555443221111111111111111 1111121 11222
Q ss_pred HHHHHHhh-ccCCceEEEEeccHH--------HHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEc
Q 005773 359 AVLLSLCS-KTFTSKVIIFSGTKQ--------AAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT 427 (678)
Q Consensus 359 ~~l~~~~~-~~~~~~vLVF~~s~~--------~~~~l~~~L~~~--~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT 427 (678)
..+..+.. -..+..+.|.||-.+ .+..++..|... +++++.+||.|+..++.+++..|++|+.+|||||
T Consensus 461 ~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaT 540 (677)
T COG1200 461 EVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVAT 540 (677)
T ss_pred HHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEe
Confidence 22222222 124678888898554 444556666533 5679999999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEcCCCC-ChhHHHHHHhhcccCCCceEEEEEeeCCc
Q 005773 428 DVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDND 478 (678)
Q Consensus 428 ~~~~~GlDi~~v~~VI~~d~p~-s~~~yiQr~GRagR~g~~G~~i~l~~~~d 478 (678)
.+.+-|+|+|+.+++|+++.-. ...+.-|-.||.||.+.+++|++++.+..
T Consensus 541 TVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 541 TVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred eEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999999988765 67888999999999889999999998766
No 96
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=1.8e-27 Score=260.19 Aligned_cols=299 Identities=20% Similarity=0.228 Sum_probs=203.6
Q ss_pred CCcHHHHHHHHHHhc----CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 147 KPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~----g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
.|+++|.+++..+.. ++..++.+|||+|||.++ +.++..+ ..++||||||++|+.||++.+......
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va-~~~~~~~--------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVA-AEAIAEL--------KRSTLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHH-HHHHHHh--------cCCEEEEECcHHHHHHHHHHHHHhcCC
Confidence 599999999999998 889999999999999874 4444443 223999999999999998776664332
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCC
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~ 302 (678)
. ..++.+.|+.... .. ..|+|+|...+...- ....+....+.+||+||||++....+......+....+
T Consensus 107 ~-~~~g~~~~~~~~~------~~-~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~-- 175 (442)
T COG1061 107 N-DEIGIYGGGEKEL------EP-AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYP-- 175 (442)
T ss_pred c-cccceecCceecc------CC-CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcccc--
Confidence 2 1233333332211 11 369999999987642 11123344799999999999987666555444433332
Q ss_pred ccEEEEEeccChhHH-H--HHHHhcCCCeEEecCCC------CCCCCCceeEEEEEech---------------------
Q 005773 303 RQTMLFSATLTEDVD-E--LIKLSLTKPLRLSADPS------AKRPSTLTEEVVRIRRM--------------------- 352 (678)
Q Consensus 303 ~q~il~SATl~~~~~-~--l~~~~~~~p~~~~~~~~------~~~~~~l~~~~~~~~~~--------------------- 352 (678)
++++|||+...-. . .+...+ .|+.+..... .-.+..+..........
T Consensus 176 --~LGLTATp~R~D~~~~~~l~~~~-g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 252 (442)
T COG1061 176 --RLGLTATPEREDGGRIGDLFDLI-GPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT 252 (442)
T ss_pred --eeeeccCceeecCCchhHHHHhc-CCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh
Confidence 8999999763221 1 111111 1333332211 11111111111100000
Q ss_pred ------------hhhhHHHHHHHHhhcc-CCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC
Q 005773 353 ------------REVNQEAVLLSLCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419 (678)
Q Consensus 353 ------------~~~~~~~~l~~~~~~~-~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g 419 (678)
....+...+..++... .+.+++|||.+...+..+...|...++ +..+.|.++..+|..+++.|+.|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g 331 (442)
T COG1061 253 LRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTG 331 (442)
T ss_pred hhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcC
Confidence 0000011111122222 467999999999999999999998888 89999999999999999999999
Q ss_pred CccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhccc-CCCceE
Q 005773 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTAR-AGREGY 469 (678)
Q Consensus 420 ~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR-~g~~G~ 469 (678)
.+++|+++.++.+|+|+|+++++|...+..|+..|+||+||.-| ...++.
T Consensus 332 ~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 332 GIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred CCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 99999999999999999999999999999999999999999999 333443
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=2.1e-25 Score=251.01 Aligned_cols=321 Identities=18% Similarity=0.198 Sum_probs=228.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
+|. .|+++|.-+--.+..| -|+.++||.|||++|.+|++...+. +..|.||+|+..||.|..+++..+..+
T Consensus 79 lgm-~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~------g~~VhIvT~ndyLA~RD~e~m~~l~~~ 149 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALT------GKGVHVITVNDYLARRDAENNRPLFEF 149 (908)
T ss_pred hCC-CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhc------CCCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 344 3778887665555444 5899999999999999999877643 334999999999999999999999999
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccCccCC-----CCeeEEEEeCCcccccC---------C
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSVDL-----DDLAVLILDEADRLLEL---------G 287 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~~~~l-----~~i~~lVvDEah~ll~~---------g 287 (678)
.|++|+++.++.+...... ...+||+++||+.| .++|+....+.. ..+.++||||||.|+-. |
T Consensus 150 lGlsv~~i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg 227 (908)
T PRK13107 150 LGLTVGINVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISG 227 (908)
T ss_pred cCCeEEEecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecC
Confidence 9999999999887643322 23689999999999 899887644433 77889999999986410 0
Q ss_pred -------hHHH----HHHHHH------------------------------------HC---------------------
Q 005773 288 -------FSAE----IHELVR------------------------------------LC--------------------- 299 (678)
Q Consensus 288 -------f~~~----i~~i~~------------------------------------~~--------------------- 299 (678)
+... +..+.. .+
T Consensus 228 ~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~ 307 (908)
T PRK13107 228 AAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLL 307 (908)
T ss_pred CCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHH
Confidence 0000 001100 00
Q ss_pred -------------CCC-------------------------------------------------------------ccE
Q 005773 300 -------------PKR-------------------------------------------------------------RQT 305 (678)
Q Consensus 300 -------------~~~-------------------------------------------------------------~q~ 305 (678)
.++ .++
T Consensus 308 ~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL 387 (908)
T PRK13107 308 HHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKL 387 (908)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHh
Confidence 000 134
Q ss_pred EEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhh--ccCCceEEEEeccHHHH
Q 005773 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAA 383 (678)
Q Consensus 306 il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vLVF~~s~~~~ 383 (678)
.+||+|...+..++...+--..+.+....+..+. .....++. ....+...+...+. ...+.++||||.|...+
T Consensus 388 ~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~-d~~d~iy~----t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~s 462 (908)
T PRK13107 388 AGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRK-DMADLVYL----TADEKYQAIIKDIKDCRERGQPVLVGTVSIEQS 462 (908)
T ss_pred hcccCCChHHHHHHHHHhCCCEEECCCCCCccce-eCCCcEEe----CHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHH
Confidence 4556666555444444332222222111111110 11111111 11222222222221 34578999999999999
Q ss_pred HHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC--------------------------
Q 005773 384 HRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII-------------------------- 437 (678)
Q Consensus 384 ~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~-------------------------- 437 (678)
+.++.+|...++.+..||+.+++.++..+...|+.|. |+|||++|+||+||.
T Consensus 463 e~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~ 540 (908)
T PRK13107 463 ELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKAD 540 (908)
T ss_pred HHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999 999999999999995
Q ss_pred -----------CccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHH
Q 005773 438 -----------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (678)
Q Consensus 438 -----------~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~ 481 (678)
|==+||-...+.|-.--.|-.||+||.|.+|.+..|++-.|.-+
T Consensus 541 ~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L~ 595 (908)
T PRK13107 541 WQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM 595 (908)
T ss_pred HHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHHH
Confidence 22389999999999999999999999999999999999877544
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=1.2e-25 Score=256.34 Aligned_cols=326 Identities=22% Similarity=0.239 Sum_probs=252.1
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhc----CC--CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 005773 137 LRACEALGYSKPTPIQAACIPLALT----GR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (678)
Q Consensus 137 ~~~l~~~g~~~~~~iQ~~~i~~ll~----g~--dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~ 210 (678)
......++|. -|+-|..||..+.. ++ |-++||.-|-|||-+++=+++-.++ .+.+|.|||||.-||.
T Consensus 585 ~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~------~GKQVAvLVPTTlLA~ 657 (1139)
T COG1197 585 EEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM------DGKQVAVLVPTTLLAQ 657 (1139)
T ss_pred HHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc------CCCeEEEEcccHHhHH
Confidence 3344556776 79999999999875 43 8999999999999987777777763 3568999999999999
Q ss_pred HHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccC
Q 005773 211 QVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (678)
Q Consensus 211 Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~ 286 (678)
|.++.|++-....+++|..+....+.+++...+ .+..||||+|-- +|.. .+.+.++.+|||||=|+
T Consensus 658 QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~k--dv~FkdLGLlIIDEEqR---- 727 (1139)
T COG1197 658 QHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLSK--DVKFKDLGLLIIDEEQR---- 727 (1139)
T ss_pred HHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhCC--CcEEecCCeEEEechhh----
Confidence 999999998888899999999988888776655 356899999932 2333 67789999999999999
Q ss_pred ChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhh
Q 005773 287 GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS 366 (678)
Q Consensus 287 gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 366 (678)
|.-.-.+-++.+..+.-++-+|||+-|....+.-..+..--.+...+.. +.+. +.++. .......+.+++..+.
T Consensus 728 -FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~-R~pV--~T~V~-~~d~~~ireAI~REl~- 801 (1139)
T COG1197 728 -FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED-RLPV--KTFVS-EYDDLLIREAILRELL- 801 (1139)
T ss_pred -cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC-Ccce--EEEEe-cCChHHHHHHHHHHHh-
Confidence 5444466666677788899999999888777776666554333332222 2211 11221 1122223333333332
Q ss_pred ccCCceEEEEeccHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEE
Q 005773 367 KTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN 444 (678)
Q Consensus 367 ~~~~~~vLVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~ 444 (678)
.++.+-..+|.....+.++..|+.. ..++++.||.|+..+-..++..|.+|+++|||||.+.+.|||||+++++|.
T Consensus 802 --RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII 879 (1139)
T COG1197 802 --RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII 879 (1139)
T ss_pred --cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE
Confidence 3677878899999999999999876 568899999999999999999999999999999999999999999999998
Q ss_pred cCCCC-ChhHHHHHHhhcccCCCceEEEEEeeCCc------HHHHHHHHH
Q 005773 445 YACPR-DLTSYVHRVGRTARAGREGYAVTFVTDND------RSLLKAIAK 487 (678)
Q Consensus 445 ~d~p~-s~~~yiQr~GRagR~g~~G~~i~l~~~~d------~~~l~~i~~ 487 (678)
.+... ...+..|..||.||.++.|+||.++-+.. .+.|+.|.+
T Consensus 880 e~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 880 ERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred eccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 77765 68899999999999999999999988542 344555554
No 99
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.95 E-value=4.2e-26 Score=258.00 Aligned_cols=149 Identities=21% Similarity=0.273 Sum_probs=130.5
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcC-
Q 005773 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA- 446 (678)
Q Consensus 368 ~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d- 446 (678)
..+.++||||+|+..+++|..+|...|+.+..+||++++.+|..++..|+.|++.|||||+++++|+|+|++++||++|
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Da 519 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDA 519 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCc
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ----CCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccchhhhhhhhHHHHHHHHHHHHHHH
Q 005773 447 ----CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQV 517 (678)
Q Consensus 447 ----~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (678)
.|.+..+|+||+|||||. ..|.|++|++..+..+.+.|.+....+-.+..++..+...++++++.+.+.+
T Consensus 520 difG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~~~~~~iq~~~~~~~~~~p~~~~~~~~~~~ 593 (655)
T TIGR00631 520 DKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEETERRRKIQMAYNEEHGITPQTIRKPIRDIL 593 (655)
T ss_pred ccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHHHhHHHHHhhhhhhcCCCCcccCcchHHHh
Confidence 799999999999999997 6899999999999999999988744444445666666655566555554433
No 100
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.2e-25 Score=254.29 Aligned_cols=319 Identities=20% Similarity=0.210 Sum_probs=235.2
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 140 CEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 140 l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
...+||. |.++|++++-.+..|..|++|||||||||.+.-.++...+. .+.++++++|.++|.+|.+..+...
T Consensus 113 ~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~------~~qrviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 113 AREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR------DGQRVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred HHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH------cCCceEeccchhhhhhhHHHHHHHH
Confidence 3566887 99999999999999999999999999999886555554442 2345999999999999999888764
Q ss_pred hhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHC
Q 005773 220 AQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (678)
Q Consensus 220 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~ 299 (678)
.....--+++++|..+. ...+.|+|+|.+.|.+++... ...+..+..||+||+|.|.+..-...+.+++-.+
T Consensus 186 fgdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg-~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 186 FGDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRG-SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred hhhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccC-cccccccceEEEEeeeeccccccchhHHHHHHhc
Confidence 43222234667776543 456789999999999999875 5778999999999999999988888889999999
Q ss_pred CCCccEEEEEeccChhHHHHHHHh--cCCCeEEecCCCCCCCCCceeEEEEEechh----hhh----------HH-----
Q 005773 300 PKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSAKRPSTLTEEVVRIRRMR----EVN----------QE----- 358 (678)
Q Consensus 300 ~~~~q~il~SATl~~~~~~l~~~~--~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~----------~~----- 358 (678)
|...|+++||||+++..+--.+.. -..|..+.. ...+|..+.+++..-.... ... ..
T Consensus 258 P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~--t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~ 335 (1041)
T COG4581 258 PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVS--TEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCF 335 (1041)
T ss_pred CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEe--ecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhcc
Confidence 999999999999986554433333 334444433 3446666665543210000 000 00
Q ss_pred --------------------------------HHHHHHhhccCCceEEEEeccHHHHHHHHHHHhh--------------
Q 005773 359 --------------------------------AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL-------------- 392 (678)
Q Consensus 359 --------------------------------~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~-------------- 392 (678)
..+...+......++|+|+-++..|+..+..+..
T Consensus 336 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~ 415 (1041)
T COG4581 336 SEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIR 415 (1041)
T ss_pred chhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHH
Confidence 0011111112235899999999999988766631
Q ss_pred --------------cCC-------------ceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEc
Q 005773 393 --------------AAL-------------KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY 445 (678)
Q Consensus 393 --------------~~~-------------~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~ 445 (678)
.++ .++++|++|-+..+..+...|..|-++||++|.+++.|+|.|.-++|+ +
T Consensus 416 ~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~ 494 (1041)
T COG4581 416 EIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-T 494 (1041)
T ss_pred HHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-e
Confidence 111 245789999999999999999999999999999999999998655555 3
Q ss_pred CC---------CCChhHHHHHHhhcccCCC--ceEEEEEeeC
Q 005773 446 AC---------PRDLTSYVHRVGRTARAGR--EGYAVTFVTD 476 (678)
Q Consensus 446 d~---------p~s~~~yiQr~GRagR~g~--~G~~i~l~~~ 476 (678)
.+ +-++..|.|+.|||||.|- .|.++++..+
T Consensus 495 ~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 495 SLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred eeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 22 2378999999999999884 5888888544
No 101
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=240.63 Aligned_cols=343 Identities=21% Similarity=0.234 Sum_probs=248.3
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEE-cCCCchh--hhhhhhchhHHHhc-------------------------CCCCCC
Q 005773 144 GYSKPTPIQAACIPLALTGRDICGS-AITGSGK--TAAFALPTLERLLY-------------------------RPKRIP 195 (678)
Q Consensus 144 g~~~~~~iQ~~~i~~ll~g~dvl~~-a~TGsGK--T~~~~l~~l~~l~~-------------------------~~~~~~ 195 (678)
.-..+|+.|.+.+..+.+++|+++- ...+.|+ +..|++++|+++++ ++++++
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3456899999999999999999853 2234455 56799999999984 234578
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCc---------eeEEEecC---------CChHHHHHHh--------------
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDI---------RCCLVVGG---------LSTKMQETAL-------------- 243 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~---------~v~~~~g~---------~~~~~~~~~l-------------- 243 (678)
+|+||||||+|+.|..+.+.+..+....+- +...-++| ..+......+
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 999999999999999999988877322110 01111111 0111111111
Q ss_pred ----------cCCCCEEEECchHHHHHHhccCc----c-CCCCeeEEEEeCCcccc--cCChHHHHHHHHHHCCCC----
Q 005773 244 ----------RSMPDIVVATPGRMIDHLRNSMS----V-DLDDLAVLILDEADRLL--ELGFSAEIHELVRLCPKR---- 302 (678)
Q Consensus 244 ----------~~~~dIiv~Tp~~L~~~l~~~~~----~-~l~~i~~lVvDEah~ll--~~gf~~~i~~i~~~~~~~---- 302 (678)
...+||+||+|.+|..++.+... + .|++|+++|||.||.++ +|.+...+...++.+|..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccCC
Confidence 12379999999999999985432 2 38999999999999987 787888888888888754
Q ss_pred -----------------ccEEEEEeccChhHHHHHHHhcCCC---eEEecC----CCCCCCCCceeEEEEEechhhhhHH
Q 005773 303 -----------------RQTMLFSATLTEDVDELIKLSLTKP---LRLSAD----PSAKRPSTLTEEVVRIRRMREVNQE 358 (678)
Q Consensus 303 -----------------~q~il~SATl~~~~~~l~~~~~~~p---~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (678)
+|+++||+-..+.+..+....|.+- +...-. ........+.|.+.++.........
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 5999999999999999988888763 111111 1111223344555544332222211
Q ss_pred HHHHH-----Hh---hccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc
Q 005773 359 AVLLS-----LC---SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA 430 (678)
Q Consensus 359 ~~l~~-----~~---~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~ 430 (678)
...+. ++ .......+|||+|++-+..+++++|+...+++..+|.+.++..-.++...|-.|...|||.|..+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 11111 11 12224678999999999999999999999999999999999999999999999999999999998
Q ss_pred c--ccCCCCCccEEEEcCCCCChhHHHHHH---hhcccCC----CceEEEEEeeCCcHHHHHHHH
Q 005773 431 A--RGLDIIGVQTVINYACPRDLTSYVHRV---GRTARAG----REGYAVTFVTDNDRSLLKAIA 486 (678)
Q Consensus 431 ~--~GlDi~~v~~VI~~d~p~s~~~yiQr~---GRagR~g----~~G~~i~l~~~~d~~~l~~i~ 486 (678)
. |..+|.||+.||+|.+|.+|..|..-+ +|+.-.| ..-.|.+++++.|.--|..|.
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 6 999999999999999999999996555 4443222 235788999999987776664
No 102
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=2.1e-25 Score=241.43 Aligned_cols=337 Identities=19% Similarity=0.200 Sum_probs=226.6
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc----CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCc
Q 005773 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (678)
Q Consensus 130 l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~----g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Pt 205 (678)
+.++..| +..+.++|+.++.|+.. +...|+...||.|||++ .+..|..|++... .. .++|||||.
T Consensus 196 ~~vPg~I--------~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k-~~-~paLIVCP~ 264 (923)
T KOG0387|consen 196 FKVPGFI--------WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGK-LT-KPALIVCPA 264 (923)
T ss_pred ccccHHH--------HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhccc-cc-CceEEEccH
Confidence 4566555 34578999999999875 56799999999999987 6677777776643 22 569999997
Q ss_pred HHHHHHHHHHHHHHhhcCCceeEEEecCCChH--------HHHHH-----hcCCCCEEEECchHHHHHHhccCccCCCCe
Q 005773 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK--------MQETA-----LRSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (678)
Q Consensus 206 r~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~--------~~~~~-----l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i 272 (678)
++..||...+..|. +.++|.++++..+.. ..+.. ......|+|+|+..+.-. ...+.-..|
T Consensus 265 -Tii~qW~~E~~~w~--p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~---~d~l~~~~W 338 (923)
T KOG0387|consen 265 -TIIHQWMKEFQTWW--PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ---GDDLLGILW 338 (923)
T ss_pred -HHHHHHHHHHHHhC--cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc---Ccccccccc
Confidence 67788888888764 567888888776521 11111 123457999999887532 123334578
Q ss_pred eEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccC-hhHHHHHHHh-cCC----------------CeEEecCC
Q 005773 273 AVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT-EDVDELIKLS-LTK----------------PLRLSADP 334 (678)
Q Consensus 273 ~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~-~~~~~l~~~~-~~~----------------p~~~~~~~ 334 (678)
.++|+||+|+|-|.. ..+...+..++ ..+.|++|+|+- +.+.++..++ +.. |+......
T Consensus 339 ~y~ILDEGH~IrNpn--s~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~Ggya 415 (923)
T KOG0387|consen 339 DYVILDEGHRIRNPN--SKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYA 415 (923)
T ss_pred cEEEecCcccccCCc--cHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccC
Confidence 999999999987643 33333344443 345566666643 3333332211 000 11000000
Q ss_pred CC----------------------------------CCCCCceeEEEEE-------------------------------
Q 005773 335 SA----------------------------------KRPSTLTEEVVRI------------------------------- 349 (678)
Q Consensus 335 ~~----------------------------------~~~~~l~~~~~~~------------------------------- 349 (678)
.. ..| .-.+.++.+
T Consensus 416 NAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp-~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~ 494 (923)
T KOG0387|consen 416 NASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLP-KKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLS 494 (923)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCC-CccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCcccee
Confidence 00 000 000000000
Q ss_pred -----------------------------echhhhhHHHHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHh-hcCCce
Q 005773 350 -----------------------------RRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFG-LAALKA 397 (678)
Q Consensus 350 -----------------------------~~~~~~~~~~~l~~~~~--~~~~~~vLVF~~s~~~~~~l~~~L~-~~~~~~ 397 (678)
.......+..++..++. ...+.++|+|..++.+...|..+|. ..++++
T Consensus 495 Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysy 574 (923)
T KOG0387|consen 495 GIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSY 574 (923)
T ss_pred chHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceE
Confidence 00111223334444443 3346799999999999999999999 689999
Q ss_pred eeccCCCCHHHHHHHHHHHhcCCcc--EEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCc--eEEEEE
Q 005773 398 AELHGNLTQAQRLEALELFRKQHVD--FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE--GYAVTF 473 (678)
Q Consensus 398 ~~lhg~l~~~~R~~~l~~F~~g~~~--vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~--G~~i~l 473 (678)
+.+.|.++...|..++..|+++..- +|++|.+.+.|+|+.+++.||.||+.|||....|..-||.|.|++ -.+|.|
T Consensus 575 lRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL 654 (923)
T KOG0387|consen 575 LRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRL 654 (923)
T ss_pred EEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEE
Confidence 9999999999999999999987644 789999999999999999999999999999999999999999965 556667
Q ss_pred eeCCcHH---HHHHHHH
Q 005773 474 VTDNDRS---LLKAIAK 487 (678)
Q Consensus 474 ~~~~d~~---~l~~i~~ 487 (678)
++..... +.++|.+
T Consensus 655 ~t~gTIEEkiY~rQI~K 671 (923)
T KOG0387|consen 655 MTAGTIEEKIYHRQIFK 671 (923)
T ss_pred ecCCcHHHHHHHHHHHH
Confidence 8876533 4444544
No 103
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.95 E-value=3.5e-26 Score=259.62 Aligned_cols=310 Identities=18% Similarity=0.189 Sum_probs=221.2
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh-hcCCcee
Q 005773 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA-QFTDIRC 227 (678)
Q Consensus 149 ~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~-~~~~~~v 227 (678)
+....+.+..+.++.-++++|+||||||++....+++..+ ..++++.++.|.|-.|.-+.+.+.+.. ...|-.|
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 4455666777777888999999999999986666666654 235689999999988888777665543 2345556
Q ss_pred EEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc-cCChHH-HHHHHHHHCCCCccE
Q 005773 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSA-EIHELVRLCPKRRQT 305 (678)
Q Consensus 228 ~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~-~i~~i~~~~~~~~q~ 305 (678)
++.+-..+. ......|-++|.|.|+..+.+ +..|+.+++|||||||.-. +..+.- .+..++...+...++
T Consensus 127 GY~iRfe~~------~s~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 127 GYSIRFESK------VSPRTRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred eEEEEeecc------CCCCceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 655544332 233457999999999999987 4568999999999999643 444432 334556667767999
Q ss_pred EEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEe-chh-hhhHHHHHHHHhhccCCceEEEEeccHHHH
Q 005773 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMR-EVNQEAVLLSLCSKTFTSKVIIFSGTKQAA 383 (678)
Q Consensus 306 il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~ 383 (678)
|+||||+..+ .+. .++.+...+.+... .. .+.-.+.... ... .................+.+|||.+...++
T Consensus 199 IimSATld~~--rfs-~~f~~apvi~i~GR--~f-PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 199 IIMSATLDAE--RFS-AYFGNAPVIEIEGR--TY-PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred EEEecccCHH--HHH-HHcCCCCEEEecCC--cc-ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 9999999753 333 34443333333211 11 1111110100 001 111122223333455578999999999999
Q ss_pred HHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCC----------
Q 005773 384 HRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR---------- 449 (678)
Q Consensus 384 ~~l~~~L~~----~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~---------- 449 (678)
+++...|.. ..+.+..+||.|+.+++.++++.-..|+.+|++||++|+.+|.|++|++||.-+.-.
T Consensus 273 ~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~ 352 (845)
T COG1643 273 ERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGL 352 (845)
T ss_pred HHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCc
Confidence 999999987 357899999999999999999888888888999999999999999999999644322
Q ss_pred --------ChhHHHHHHhhcccCCCceEEEEEeeCCc
Q 005773 450 --------DLTSYVHRVGRTARAGREGYAVTFVTDND 478 (678)
Q Consensus 450 --------s~~~yiQr~GRagR~g~~G~~i~l~~~~d 478 (678)
|-.+..||.|||||.+ +|.||.+|+..+
T Consensus 353 ~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~ 388 (845)
T COG1643 353 TRLETEPISKASADQRAGRAGRTG-PGICYRLYSEED 388 (845)
T ss_pred eeeeEEEechhhhhhhccccccCC-CceEEEecCHHH
Confidence 5667889999999976 999999999754
No 104
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.7e-25 Score=240.22 Aligned_cols=308 Identities=16% Similarity=0.155 Sum_probs=214.6
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH-hhcCCcee
Q 005773 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI-AQFTDIRC 227 (678)
Q Consensus 149 ~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l-~~~~~~~v 227 (678)
..+-.+.+..+-.++-+|+.|+||||||++....+++..+. ..+++.+..|+|..|.-++..+..- ....|-.|
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~-----~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA-----SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc-----cCCcEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 34446677777788889999999999998744444444332 2345899999999988877665543 22345566
Q ss_pred EEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHC---CCCcc
Q 005773 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC---PKRRQ 304 (678)
Q Consensus 228 ~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~---~~~~q 304 (678)
++.+...+... ....|.++|.|.|++.+.. +..|+.+++|||||||.-.- +.+.+.-+++.+ .+..+
T Consensus 128 GY~IRFed~ts------~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl--~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 128 GYTIRFEDSTS------KDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSL--HTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred eeEEEecccCC------CceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhh--HHHHHHHHHHHHHhcCCCce
Confidence 66554433222 2357999999999998876 45689999999999997432 223333333332 23568
Q ss_pred EEEEEeccChhHHHHHHHhcCC-CeEEecCCCCCCCCCceeEEEEEe-chhhhhHHHHHHHHhhccCCceEEEEeccHHH
Q 005773 305 TMLFSATLTEDVDELIKLSLTK-PLRLSADPSAKRPSTLTEEVVRIR-RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQA 382 (678)
Q Consensus 305 ~il~SATl~~~~~~l~~~~~~~-p~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~ 382 (678)
+|++|||+..+ . ...++.+ |+.. +. . +...+...+...+ ..+.......+..++...+++-+|||.+..++
T Consensus 198 lIimSATlda~--k-fS~yF~~a~i~~-i~--G-R~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeE 270 (674)
T KOG0922|consen 198 LIIMSATLDAE--K-FSEYFNNAPILT-IP--G-RTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEE 270 (674)
T ss_pred EEEEeeeecHH--H-HHHHhcCCceEe-ec--C-CCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHH
Confidence 99999999732 2 3344444 4332 21 1 1111221222111 11112222334455566777899999999999
Q ss_pred HHHHHHHHhhc----CC----ceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEE--------cC
Q 005773 383 AHRLKILFGLA----AL----KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN--------YA 446 (678)
Q Consensus 383 ~~~l~~~L~~~----~~----~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~--------~d 446 (678)
++.++..|... +- -+..+||.|+.+++.+++..-..|..+|+++|++++..|.|+||.+||. |+
T Consensus 271 Ie~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~ 350 (674)
T KOG0922|consen 271 IEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYN 350 (674)
T ss_pred HHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeec
Confidence 99999888754 11 2468999999999999999999999999999999999999999999995 33
Q ss_pred C----------CCChhHHHHHHhhcccCCCceEEEEEeeCCcH
Q 005773 447 C----------PRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (678)
Q Consensus 447 ~----------p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~ 479 (678)
+ |-|-.+-.||.|||||.| +|.||.+|++.+.
T Consensus 351 p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 351 PRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred cccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 3 336778899999999976 9999999998764
No 105
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=7.8e-26 Score=242.42 Aligned_cols=319 Identities=20% Similarity=0.237 Sum_probs=236.7
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (678)
.+.|.|..+|..+-++..|++.|.|.+|||.++-.++...|-. .-+|++..|-++|.+|-|+.+..-.+ .
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~------kQRVIYTSPIKALSNQKYREl~~EF~----D 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE------KQRVIYTSPIKALSNQKYRELLEEFK----D 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh------cCeEEeeChhhhhcchhHHHHHHHhc----c
Confidence 4899999999999999999999999999998877777666632 34799999999999999998876433 3
Q ss_pred eEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEE
Q 005773 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (678)
Q Consensus 227 v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~i 306 (678)
|++.+|..+. ...+..+|+|.+.|..+|.++ ..-+..+.+||+||.|.|-+....-.+.+-+-.+|.+.+.+
T Consensus 199 VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRG-SEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~V 270 (1041)
T KOG0948|consen 199 VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRG-SEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFV 270 (1041)
T ss_pred cceeecceee-------CCCCceeeeHHHHHHHHHhcc-chHhheeeeEEeeeehhccccccceeeeeeEEeccccceEE
Confidence 5667776553 344679999999999999876 44578899999999999998766666777778899999999
Q ss_pred EEEeccChhHH--HHHHHhcCCCeEEecCCCCCCCCCceeEEEEEec------------hhhhhHHH-------------
Q 005773 307 LFSATLTEDVD--ELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRR------------MREVNQEA------------- 359 (678)
Q Consensus 307 l~SATl~~~~~--~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~~~~~------------- 359 (678)
++|||+|+..+ +++...-..|..+.. ...+|+.+.|.+..... .++..-..
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVY--TdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~ 348 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVY--TDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDG 348 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEe--ecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcc
Confidence 99999997543 334433344544433 55578778776443111 00000000
Q ss_pred ------------------------HHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcC---------------------
Q 005773 360 ------------------------VLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA--------------------- 394 (678)
Q Consensus 360 ------------------------~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~--------------------- 394 (678)
.+...+-.....++|||+-++++|+.++-.+..+.
T Consensus 349 ~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 349 KKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred ccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 01111111123589999999999999877663321
Q ss_pred ------------------CceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCC-------
Q 005773 395 ------------------LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR------- 449 (678)
Q Consensus 395 ------------------~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~------- 449 (678)
-.++++||++-+--..-+.-.|.+|-+++|.||..++.|||.|.-++|+ ..+-.
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF-T~~rKfDG~~fR 507 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF-TAVRKFDGKKFR 507 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE-eeccccCCccee
Confidence 2467899999999999999999999999999999999999999665555 22221
Q ss_pred --ChhHHHHHHhhcccCCC--ceEEEEEeeCC-cHHHHHHHH
Q 005773 450 --DLTSYVHRVGRTARAGR--EGYAVTFVTDN-DRSLLKAIA 486 (678)
Q Consensus 450 --s~~~yiQr~GRagR~g~--~G~~i~l~~~~-d~~~l~~i~ 486 (678)
+.-.|+|+.|||||.|. .|.||++++.. +....+.+.
T Consensus 508 wissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~ 549 (1041)
T KOG0948|consen 508 WISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDML 549 (1041)
T ss_pred eecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHh
Confidence 56789999999999884 69999998764 444555544
No 106
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=3.3e-25 Score=248.47 Aligned_cols=347 Identities=19% Similarity=0.220 Sum_probs=247.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCC-CEEEEcCCCchhhhhhhhchhHHHhcCCC-----CCCCeEEEEEcCc
Q 005773 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGR-DICGSAITGSGKTAAFALPTLERLLYRPK-----RIPAIRVLILTPT 205 (678)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~-dvl~~a~TGsGKT~~~~l~~l~~l~~~~~-----~~~~~~vLIl~Pt 205 (678)
++.+-..++ .|..++.++|..+.+.++.+. ++++|||||+|||..+++-+|+.+-.+.. ...+.++++++|.
T Consensus 296 lP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 444444443 467789999999999999985 89999999999999999999998865433 1235589999999
Q ss_pred HHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCcc-CCCCeeEEEEeCCcccc
Q 005773 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLL 284 (678)
Q Consensus 206 r~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~-~l~~i~~lVvDEah~ll 284 (678)
++|+..|...|.+.....+++|.-.+|........ .....|+|+||+..--.-++.... ..+-++++|+||.|.+-
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 99999988888877778899999999986643332 234689999999874333332222 23457899999999774
Q ss_pred -cCChH--HHHHHHHH---HCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHH
Q 005773 285 -ELGFS--AEIHELVR---LCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358 (678)
Q Consensus 285 -~~gf~--~~i~~i~~---~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (678)
+.|.. ..+..... .-.....++++|||+|+... .......++.-+.......+|..+.|.++-+.......+.
T Consensus 451 DdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~D-V~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~ 529 (1674)
T KOG0951|consen 451 DDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYED-VASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRF 529 (1674)
T ss_pred cccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhh-hHHHhccCcccccccCcccCcCCccceEeccccCCchHHH
Confidence 34422 22222222 22346789999999996432 2222223343444444556888899998877644333332
Q ss_pred -----HHHHHHhhccCCceEEEEeccHHHHHHHHHHHhh-------------------------------------cCCc
Q 005773 359 -----AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL-------------------------------------AALK 396 (678)
Q Consensus 359 -----~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~-------------------------------------~~~~ 396 (678)
.....++.....++||||+-++++.-..++.++. ....
T Consensus 530 qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpyg 609 (1674)
T KOG0951|consen 530 QAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYG 609 (1674)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhcc
Confidence 3334445555568999999998877766655531 1357
Q ss_pred eeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEE----EcCCCC------ChhHHHHHHhhcccCC-
Q 005773 397 AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI----NYACPR------DLTSYVHRVGRTARAG- 465 (678)
Q Consensus 397 ~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI----~~d~p~------s~~~yiQr~GRagR~g- 465 (678)
++.+|++|+..+|..+...|..|.++|||+|-.+++|+|+|+-.++| -|++-. +|...+||.||+||.+
T Consensus 610 faIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~ 689 (1674)
T KOG0951|consen 610 FAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQY 689 (1674)
T ss_pred ceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCcc
Confidence 88999999999999999999999999999999999999999766665 355543 7999999999999965
Q ss_pred -CceEEEEEeeCCcHHHHHH
Q 005773 466 -REGYAVTFVTDNDRSLLKA 484 (678)
Q Consensus 466 -~~G~~i~l~~~~d~~~l~~ 484 (678)
+.|..+++....+..+...
T Consensus 690 D~~gegiiit~~se~qyyls 709 (1674)
T KOG0951|consen 690 DTCGEGIIITDHSELQYYLS 709 (1674)
T ss_pred CcCCceeeccCchHhhhhHH
Confidence 4566666655555444433
No 107
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.94 E-value=1.9e-24 Score=229.30 Aligned_cols=299 Identities=20% Similarity=0.233 Sum_probs=231.0
Q ss_pred cCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC-Cc----eeEEEec--------------CCChHHHHHHhc-----
Q 005773 189 YRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT-DI----RCCLVVG--------------GLSTKMQETALR----- 244 (678)
Q Consensus 189 ~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~-~~----~v~~~~g--------------~~~~~~~~~~l~----- 244 (678)
.+++++++|+||||+|+|..|.++.+.+.+++... .+ +..--+| .......+..+.
T Consensus 30 ~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~D 109 (442)
T PF06862_consen 30 FRDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNND 109 (442)
T ss_pred hhccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCcc
Confidence 36678999999999999999999999988876541 10 0000011 011111222221
Q ss_pred --------------------CCCCEEEECchHHHHHHhcc----Cc-cCCCCeeEEEEeCCcccc--cCChHHHHHHHHH
Q 005773 245 --------------------SMPDIVVATPGRMIDHLRNS----MS-VDLDDLAVLILDEADRLL--ELGFSAEIHELVR 297 (678)
Q Consensus 245 --------------------~~~dIiv~Tp~~L~~~l~~~----~~-~~l~~i~~lVvDEah~ll--~~gf~~~i~~i~~ 297 (678)
..+|||||||.+|...+... .. -.|++|+++|||.||.|+ ||.|...+...++
T Consensus 110 D~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN 189 (442)
T PF06862_consen 110 DCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLN 189 (442)
T ss_pred ceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhc
Confidence 22899999999999988742 12 238999999999999877 8999999999999
Q ss_pred HCCCC---------------------ccEEEEEeccChhHHHHHHHhcCCC---eEEecCCC-----CCCCCCceeEEEE
Q 005773 298 LCPKR---------------------RQTMLFSATLTEDVDELIKLSLTKP---LRLSADPS-----AKRPSTLTEEVVR 348 (678)
Q Consensus 298 ~~~~~---------------------~q~il~SATl~~~~~~l~~~~~~~p---~~~~~~~~-----~~~~~~l~~~~~~ 348 (678)
..|+. +|+|++|+..++++..+.+..|.+. +.+..... ......+.|.+.+
T Consensus 190 ~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r 269 (442)
T PF06862_consen 190 LQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQR 269 (442)
T ss_pred cCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEE
Confidence 98863 6999999999999999999877764 22222111 2345677888888
Q ss_pred EechhhhhHHHHHHH--------Hhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC
Q 005773 349 IRRMREVNQEAVLLS--------LCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419 (678)
Q Consensus 349 ~~~~~~~~~~~~l~~--------~~~-~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g 419 (678)
+.............. .+. ....+++|||+||+-+..+|+++|...++.++.+|.++++.+-.++...|..|
T Consensus 270 ~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G 349 (442)
T PF06862_consen 270 FDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG 349 (442)
T ss_pred ecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC
Confidence 875444333322221 122 44568999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEccccc--ccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCC------ceEEEEEeeCCcHHHHHHHHH
Q 005773 420 HVDFLIATDVAA--RGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR------EGYAVTFVTDNDRSLLKAIAK 487 (678)
Q Consensus 420 ~~~vLvaT~~~~--~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~------~G~~i~l~~~~d~~~l~~i~~ 487 (678)
+..|||.|..+. +...|.||++||+|.+|.+|..|...++..+.... ...|.++++..|...|++|.-
T Consensus 350 ~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 350 RKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred CceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 999999999986 89999999999999999999999998876665332 579999999999998888753
No 108
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.93 E-value=4.4e-24 Score=243.52 Aligned_cols=182 Identities=21% Similarity=0.303 Sum_probs=143.2
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCC-
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC- 447 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~- 447 (678)
.+.++||||+|+..+++|+.+|...|+.+..+||++++.+|..++..|+.|.+.|||||+++++|+|+|++++||+++.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ----CCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCc-------cchhhhhhhhHHHHHHHHHHHHHH
Q 005773 448 ----PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSK-------LKSRIVAEQSITKWSKIIEQMEDQ 516 (678)
Q Consensus 448 ----p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 516 (678)
|.+..+|+||+|||||. ..|.|++|++..+..+.+.+.+....+ .+..+++...+..|...++.+++.
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTIKKKIRDILDSVYKK 603 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHHHHHHHHHhhhhh
Confidence 78999999999999995 789999999987777776665544322 223455555555566555433332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005773 517 VAAILQEEREERILRKAEMEATKAENMIAHKEEIFAR 553 (678)
Q Consensus 517 ~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~r 553 (678)
..+..+.....++.++.+|.++.+.+.++++...|
T Consensus 604 --~~~~~~~~~~~~~~l~~~M~~aa~~l~fE~Aa~~R 638 (652)
T PRK05298 604 --DKLSKKELEKLIKELEKQMKEAAKNLEFEEAARLR 638 (652)
T ss_pred --ccCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 22344445556667777777777666665554433
No 109
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.93 E-value=1.5e-25 Score=252.10 Aligned_cols=329 Identities=19% Similarity=0.243 Sum_probs=221.1
Q ss_pred CCCcHHHHHHHHHHhc----CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 146 SKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 146 ~~~~~iQ~~~i~~ll~----g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
..++.+|.+.++|++. ++++|++..+|.|||++ .+..|..|+...+- .+..|||+|...+.. |...|..+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~~--~gpflvvvplst~~~-W~~ef~~w-- 442 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQI--HGPFLVVVPLSTITA-WEREFETW-- 442 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhhc--cCCeEEEeehhhhHH-HHHHHHHH--
Confidence 6799999999999875 68999999999999976 56666666655432 234799999988765 34445544
Q ss_pred cCCceeEEEecCCChHHHHHH----hcC-----CCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHH
Q 005773 222 FTDIRCCLVVGGLSTKMQETA----LRS-----MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292 (678)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~~----l~~-----~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i 292 (678)
+.+++++++|........+. ... .++++++|++.++.--. .+.--.|.+++|||||+|-|.. ..+
T Consensus 443 -~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~---~L~~i~w~~~~vDeahrLkN~~--~~l 516 (1373)
T KOG0384|consen 443 -TDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA---ELSKIPWRYLLVDEAHRLKNDE--SKL 516 (1373)
T ss_pred -hhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh---hhccCCcceeeecHHhhcCchH--HHH
Confidence 47888888887654432221 122 37899999999854222 2223368899999999988643 222
Q ss_pred HHHHHHCCCCccEEEEEeccC-hhHHHHHHHh-cCCCeEEec---------------------------------CCCCC
Q 005773 293 HELVRLCPKRRQTMLFSATLT-EDVDELIKLS-LTKPLRLSA---------------------------------DPSAK 337 (678)
Q Consensus 293 ~~i~~~~~~~~q~il~SATl~-~~~~~l~~~~-~~~p~~~~~---------------------------------~~~~~ 337 (678)
-..+..+... ..+++|+|+- +.+.++..+. +-.|-.+.. +....
T Consensus 517 ~~~l~~f~~~-~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks 595 (1373)
T KOG0384|consen 517 YESLNQFKMN-HRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS 595 (1373)
T ss_pred HHHHHHhccc-ceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC
Confidence 2223333322 3466677754 3444443221 111111100 00000
Q ss_pred CCCCceeEEEEEe-------------------------------------------------chhhh--h------HHHH
Q 005773 338 RPSTLTEEVVRIR-------------------------------------------------RMREV--N------QEAV 360 (678)
Q Consensus 338 ~~~~l~~~~~~~~-------------------------------------------------~~~~~--~------~~~~ 360 (678)
.|+ -...++++. ..... . ....
T Consensus 596 lp~-k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~ 674 (1373)
T KOG0384|consen 596 LPP-KEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEA 674 (1373)
T ss_pred CCC-CcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHH
Confidence 111 111111111 00000 0 0011
Q ss_pred HHH-------------Hhh--ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc---CCcc
Q 005773 361 LLS-------------LCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK---QHVD 422 (678)
Q Consensus 361 l~~-------------~~~--~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~---g~~~ 422 (678)
+.. ++. +..+++||||.+...+.+.|++||...++.+-.|.|.+..+-|..++.+|+. ..+.
T Consensus 675 L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFv 754 (1373)
T KOG0384|consen 675 LQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFV 754 (1373)
T ss_pred HHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceE
Confidence 111 111 3347899999999999999999999999999999999999999999999985 4577
Q ss_pred EEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCc--eEEEEEeeCCc--HHHHHHHHHH
Q 005773 423 FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE--GYAVTFVTDND--RSLLKAIAKR 488 (678)
Q Consensus 423 vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~--G~~i~l~~~~d--~~~l~~i~~~ 488 (678)
+|+||.+++.|||+..+++||+||..|||+..+|...||+|+|++ ..+|.|++.+. ..++.+...+
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~K 824 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLK 824 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999975 56888899875 4455554443
No 110
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=9.5e-24 Score=209.16 Aligned_cols=313 Identities=20% Similarity=0.238 Sum_probs=217.7
Q ss_pred CCcHHHHHHHHHHhc----CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 147 KPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~----g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
+++|.|+.+-..+++ ..+.|+.|.||+|||-. +.+.++..+. .+.+|.|.+|+...|..++..+++ .|
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~-----~G~~vciASPRvDVclEl~~Rlk~--aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN-----QGGRVCIASPRVDVCLELYPRLKQ--AF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh-----cCCeEEEecCcccchHHHHHHHHH--hh
Confidence 689999988877665 47999999999999976 6677776654 366799999999999999999887 45
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCC
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~ 302 (678)
.+..+.+++|+....-. ..++|+|...|+..-. .++++||||+|..--..-......+-+.....
T Consensus 169 ~~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~--------aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 169 SNCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ--------AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKE 233 (441)
T ss_pred ccCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh--------hccEEEEeccccccccCCHHHHHHHHHhhccc
Confidence 56778899998665422 5799999999877544 35689999999854211111112223334456
Q ss_pred ccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhH----HHHHHHHhh--ccCCceEEEE
Q 005773 303 RQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ----EAVLLSLCS--KTFTSKVIIF 376 (678)
Q Consensus 303 ~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~l~~~~~--~~~~~~vLVF 376 (678)
.-+|++|||++..+..-+...-..++.+.. .....+-..-.++++........ ...+..++. ...+.++|||
T Consensus 234 g~~IylTATp~k~l~r~~~~g~~~~~klp~--RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF 311 (441)
T COG4098 234 GATIYLTATPTKKLERKILKGNLRILKLPA--RFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIF 311 (441)
T ss_pred CceEEEecCChHHHHHHhhhCCeeEeecch--hhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 679999999998887665443222222211 11111111112344333222111 112333333 3346799999
Q ss_pred eccHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCC--CChh
Q 005773 377 SGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACP--RDLT 452 (678)
Q Consensus 377 ~~s~~~~~~l~~~L~~~--~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p--~s~~ 452 (678)
+++....+.++..|+.. ...++..|+. ...|.+..+.|++|+.++||+|.+++||+.+|+|+++|.-.-. .+..
T Consensus 312 ~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 312 FPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred ecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHH
Confidence 99999999999999543 4455778875 4678999999999999999999999999999999997743333 3678
Q ss_pred HHHHHHhhcccCC--CceEEEEEeeCCcHHHHHHHH
Q 005773 453 SYVHRVGRTARAG--REGYAVTFVTDNDRSLLKAIA 486 (678)
Q Consensus 453 ~yiQr~GRagR~g--~~G~~i~l~~~~d~~~l~~i~ 486 (678)
..+|..||+||.- -.|.++.|-......+.+++.
T Consensus 390 aLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~k 425 (441)
T COG4098 390 ALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARK 425 (441)
T ss_pred HHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHH
Confidence 9999999999933 358877776666666655543
No 111
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=2.7e-24 Score=254.86 Aligned_cols=305 Identities=20% Similarity=0.267 Sum_probs=195.4
Q ss_pred CCcHHHHHHHHHHhc----C-CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 147 KPTPIQAACIPLALT----G-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~----g-~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
.++++|..+|..+.. | +.++++++||||||.+ ++.++..++... ...+||||+|+++|+.|+.+.|..+..
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~t-ai~li~~L~~~~---~~~rVLfLvDR~~L~~Qa~~~F~~~~~ 488 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRT-AIALMYRLLKAK---RFRRILFLVDRSALGEQAEDAFKDTKI 488 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHH-HHHHHHHHHhcC---ccCeEEEEecHHHHHHHHHHHHHhccc
Confidence 489999999987763 3 6799999999999987 455666665432 235899999999999999999887532
Q ss_pred cCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhcc----CccCCCCeeEEEEeCCccccc---------CC-
Q 005773 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS----MSVDLDDLAVLILDEADRLLE---------LG- 287 (678)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~----~~~~l~~i~~lVvDEah~ll~---------~g- 287 (678)
.....+..+++..... .........|+|+|+..|...+... ..+.+..+++|||||||+-.. .+
T Consensus 489 ~~~~~~~~i~~i~~L~--~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~ 566 (1123)
T PRK11448 489 EGDQTFASIYDIKGLE--DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQF 566 (1123)
T ss_pred ccccchhhhhchhhhh--hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhcc
Confidence 2221111122211111 1112334689999999987765321 124577899999999999531 01
Q ss_pred -----hHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCe---------------------EEecCCC--C---
Q 005773 288 -----FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPL---------------------RLSADPS--A--- 336 (678)
Q Consensus 288 -----f~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~---------------------~~~~~~~--~--- 336 (678)
+...+..++..+. .-.|+|||||...... ++..|+ .+..... .
T Consensus 567 ~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~----~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~ 640 (1123)
T PRK11448 567 RDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTE----IFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHF 640 (1123)
T ss_pred chhhhHHHHHHHHHhhcC--ccEEEEecCCccchhH----HhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccc
Confidence 1345566666543 4579999999643222 122232 1111000 0
Q ss_pred CCCC---CceeEEEEEe--chh-----hh---hH----H-------HHHHHHhhccCCceEEEEeccHHHHHHHHHHHhh
Q 005773 337 KRPS---TLTEEVVRIR--RMR-----EV---NQ----E-------AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL 392 (678)
Q Consensus 337 ~~~~---~l~~~~~~~~--~~~-----~~---~~----~-------~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~ 392 (678)
.... .+......+. ... .. .+ . ..+...+....++++||||.+...|+.+...|..
T Consensus 641 ~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~ 720 (1123)
T PRK11448 641 EKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKE 720 (1123)
T ss_pred cccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 0000 0000000000 000 00 00 0 0011112222347999999999999998888764
Q ss_pred c------CC---ceeeccCCCCHHHHHHHHHHHhcCCc-cEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcc
Q 005773 393 A------AL---KAAELHGNLTQAQRLEALELFRKQHV-DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTA 462 (678)
Q Consensus 393 ~------~~---~~~~lhg~l~~~~R~~~l~~F~~g~~-~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRag 462 (678)
. ++ .+..+||+++ ++..+++.|+++.. .|||+++++.+|+|+|.|.+||++.++.|...|+|++||+.
T Consensus 721 ~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgt 798 (1123)
T PRK11448 721 AFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRAT 798 (1123)
T ss_pred HHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhc
Confidence 3 22 4566888875 46789999999887 69999999999999999999999999999999999999999
Q ss_pred cCC
Q 005773 463 RAG 465 (678)
Q Consensus 463 R~g 465 (678)
|..
T Consensus 799 R~~ 801 (1123)
T PRK11448 799 RLC 801 (1123)
T ss_pred cCC
Confidence 953
No 112
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=9.3e-25 Score=231.63 Aligned_cols=309 Identities=17% Similarity=0.184 Sum_probs=208.3
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH-hhcCCc
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI-AQFTDI 225 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l-~~~~~~ 225 (678)
...++-.+.+.++-.++-+||.|.||||||++....+.+..+.. .+.++-+..|.|..|..+...+.+- ....|-
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk----~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~ 340 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTK----GGKKIGCTQPRRVAAMSVAARVAEEMGVKLGH 340 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccccc----CCceEeecCcchHHHHHHHHHHHHHhCccccc
Confidence 35667778888888899999999999999986433343333222 2345899999999999887665542 222333
Q ss_pred eeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccc-ccCCh-HHHHHHHHHHCCCCc
Q 005773 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL-LELGF-SAEIHELVRLCPKRR 303 (678)
Q Consensus 226 ~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l-l~~gf-~~~i~~i~~~~~~~~ 303 (678)
.|++-+...+-. ....-|-++|.|.|+..+.. ...|.+++++||||||.- +.... ...+..|.+. .+..
T Consensus 341 eVGYsIRFEdcT------SekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHERTL~TDILfgLvKDIar~-RpdL 411 (902)
T KOG0923|consen 341 EVGYSIRFEDCT------SEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARF-RPDL 411 (902)
T ss_pred ccceEEEecccc------CcceeeeeecchhHHHHHhc--cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhh-CCcc
Confidence 344333222211 12235779999999988876 567899999999999963 22221 1222333333 4678
Q ss_pred cEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHH---HHHHhhccCCceEEEEeccH
Q 005773 304 QTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV---LLSLCSKTFTSKVIIFSGTK 380 (678)
Q Consensus 304 q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~vLVF~~s~ 380 (678)
++++.|||+..+ .+ ..++.+...+.+ + ..+.+. ..++...+ ....-.+. ++.++...+.+-+|||....
T Consensus 412 KllIsSAT~DAe--kF-S~fFDdapIF~i-P-GRRyPV--di~Yt~~P-EAdYldAai~tVlqIH~tqp~GDILVFltGQ 483 (902)
T KOG0923|consen 412 KLLISSATMDAE--KF-SAFFDDAPIFRI-P-GRRYPV--DIFYTKAP-EADYLDAAIVTVLQIHLTQPLGDILVFLTGQ 483 (902)
T ss_pred eEEeeccccCHH--HH-HHhccCCcEEec-c-Ccccce--eeecccCC-chhHHHHHHhhheeeEeccCCccEEEEeccH
Confidence 899999999743 22 334443222222 1 222221 11111111 11122222 23344455668899999999
Q ss_pred HHHHHHHHHHhhc---------CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCC----
Q 005773 381 QAAHRLKILFGLA---------ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC---- 447 (678)
Q Consensus 381 ~~~~~l~~~L~~~---------~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~---- 447 (678)
...+.+...|... .+-++++|++++...+..+++.-..|-.+|++||++|+..|.|+||.+||.-+.
T Consensus 484 eEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~n 563 (902)
T KOG0923|consen 484 EEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQN 563 (902)
T ss_pred HHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcccccc
Confidence 9888877766432 356789999999999999999999999999999999999999999999995332
Q ss_pred --------------CCChhHHHHHHhhcccCCCceEEEEEeeCC
Q 005773 448 --------------PRDLTSYVHRVGRTARAGREGYAVTFVTDN 477 (678)
Q Consensus 448 --------------p~s~~~yiQr~GRagR~g~~G~~i~l~~~~ 477 (678)
|-|-.+-.||.|||||.| +|.|+.||+.+
T Consensus 564 synprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 564 SYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred CcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 225567789999999987 99999999964
No 113
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.93 E-value=1.3e-24 Score=207.81 Aligned_cols=165 Identities=38% Similarity=0.559 Sum_probs=142.3
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeE
Q 005773 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228 (678)
Q Consensus 149 ~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~ 228 (678)
||+|.++++.+.+|+++++.||||+|||++|++|+++.+... . ..++||++|+++|+.|+++.+..++...++++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~---~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-K---DARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-S---SSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-C---CceEEEEeecccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999988765 2 237999999999999999999999888888999
Q ss_pred EEecCCChH-HHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCC--CCccE
Q 005773 229 LVVGGLSTK-MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP--KRRQT 305 (678)
Q Consensus 229 ~~~g~~~~~-~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~--~~~q~ 305 (678)
.++|+.... .....+...++|+|+||++|...+..... .+.++++|||||+|.+..+++...+..+++.+. .+.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~ 155 (169)
T PF00270_consen 77 LLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQI 155 (169)
T ss_dssp EESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEE
T ss_pred cccccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcE
Confidence 999988755 44445566799999999999999987433 667799999999999999888888888888873 35899
Q ss_pred EEEEeccChhHHH
Q 005773 306 MLFSATLTEDVDE 318 (678)
Q Consensus 306 il~SATl~~~~~~ 318 (678)
+++|||+++.++.
T Consensus 156 i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 156 ILLSATLPSNVEK 168 (169)
T ss_dssp EEEESSSTHHHHH
T ss_pred EEEeeCCChhHhh
Confidence 9999999976654
No 114
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=1e-23 Score=233.41 Aligned_cols=340 Identities=20% Similarity=0.262 Sum_probs=239.1
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHH--HHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHH
Q 005773 131 NLSRPLLRACEALGYSKPTPIQAACI--PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (678)
Q Consensus 131 ~l~~~l~~~l~~~g~~~~~~iQ~~~i--~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~L 208 (678)
+++....-..+..|...++.+|.+|+ |.++.++|+|+.+||+.|||++.-+-++..++.+.+ .++.++|-...
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr-----~~llilp~vsi 281 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR-----NVLLILPYVSI 281 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh-----ceeEecceeeh
Confidence 44444555556789999999999997 678889999999999999999999998888876644 47999999888
Q ss_pred HHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccC-ccCCCCeeEEEEeCCcccccCC
Q 005773 209 AVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM-SVDLDDLAVLILDEADRLLELG 287 (678)
Q Consensus 209 a~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~-~~~l~~i~~lVvDEah~ll~~g 287 (678)
+..-...+..+....|+.|...+|...+... ...-+|.|||-++-...+.... .-.+..+.+|||||.|.+.+.+
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~ 357 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKG 357 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccc
Confidence 7777777777777789998888876655432 2335799999887554443211 1246788999999999999887
Q ss_pred hHHHHHHHHHH-----CCCCccEEEEEeccChh--HHHHHHHhcCCCeEEecCCCCCCCCCceeEE------EEEec---
Q 005773 288 FSAEIHELVRL-----CPKRRQTMLFSATLTED--VDELIKLSLTKPLRLSADPSAKRPSTLTEEV------VRIRR--- 351 (678)
Q Consensus 288 f~~~i~~i~~~-----~~~~~q~il~SATl~~~--~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~------~~~~~--- 351 (678)
....+..++.. .....|+|+||||+++. +..++..++ .. ...+|..+.+.. +....
T Consensus 358 rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~----y~----t~fRPv~L~E~ik~G~~i~~~~r~~~ 429 (1008)
T KOG0950|consen 358 RGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFV----YT----TRFRPVPLKEYIKPGSLIYESSRNKV 429 (1008)
T ss_pred cchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhh----ee----cccCcccchhccCCCcccccchhhHH
Confidence 66665555432 22346799999999852 233322211 11 111222221111 00000
Q ss_pred ----------hhhhhHHHHHHHHhhcc--CCceEEEEeccHHHHHHHHHHHhh---------------------------
Q 005773 352 ----------MREVNQEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGL--------------------------- 392 (678)
Q Consensus 352 ----------~~~~~~~~~l~~~~~~~--~~~~vLVF~~s~~~~~~l~~~L~~--------------------------- 392 (678)
......++.+..++... .+..+||||+++..|+.++..+..
T Consensus 430 lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~ 509 (1008)
T KOG0950|consen 430 LREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRI 509 (1008)
T ss_pred HHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcC
Confidence 00001112233333322 235699999999999988654411
Q ss_pred -----------cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEc---CCC-CChhHHHHH
Q 005773 393 -----------AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINY---ACP-RDLTSYVHR 457 (678)
Q Consensus 393 -----------~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~---d~p-~s~~~yiQr 457 (678)
....++++|++++..+|..+...|++|...|++||+.++.|+|+|..+++|-+ +.+ .+-..|.|+
T Consensus 510 ~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM 589 (1008)
T KOG0950|consen 510 PGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQM 589 (1008)
T ss_pred CcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhh
Confidence 12457899999999999999999999999999999999999999988888743 222 367799999
Q ss_pred HhhcccCC--CceEEEEEeeCCcHHHHHHHHH
Q 005773 458 VGRTARAG--REGYAVTFVTDNDRSLLKAIAK 487 (678)
Q Consensus 458 ~GRagR~g--~~G~~i~l~~~~d~~~l~~i~~ 487 (678)
+|||||+| ..|.+++++...+...+..+..
T Consensus 590 ~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 590 VGRAGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hhhhhhcccccCcceEEEeeccchhHHHHHHh
Confidence 99999987 4699999999999877666543
No 115
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.3e-22 Score=223.67 Aligned_cols=279 Identities=25% Similarity=0.302 Sum_probs=192.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 005773 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (678)
Q Consensus 144 g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~ 223 (678)
|| .|+..|.-...-++.|++.-+.||||.|||+--++..+ +.. ..+.+++||+||+.|+.|+++.+.+++...
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl---~~a---~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSL---YLA---KKGKRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHH---HHH---hcCCeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 55 79999999999999999999999999999964222222 211 124679999999999999999999998765
Q ss_pred C-ceeEE-EecCCChHHHHH----HhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccccc-----------C
Q 005773 224 D-IRCCL-VVGGLSTKMQET----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-----------L 286 (678)
Q Consensus 224 ~-~~v~~-~~g~~~~~~~~~----~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~-----------~ 286 (678)
+ ..+.+ .++..+...... .-.++.||+|+|...|......... -++++++||.+|.++- .
T Consensus 153 ~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~---~kFdfifVDDVDA~LkaskNvDriL~Ll 229 (1187)
T COG1110 153 GSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK---LKFDFIFVDDVDAILKASKNVDRLLRLL 229 (1187)
T ss_pred CCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc---cCCCEEEEccHHHHHhccccHHHHHHHc
Confidence 5 44443 455555544333 2346799999999988776655322 3688999999998763 2
Q ss_pred ChHHHH-------HHHHHH------------------------CCCCccEEEEEeccChhH--HHHHHHhcCCCeEEecC
Q 005773 287 GFSAEI-------HELVRL------------------------CPKRRQTMLFSATLTEDV--DELIKLSLTKPLRLSAD 333 (678)
Q Consensus 287 gf~~~i-------~~i~~~------------------------~~~~~q~il~SATl~~~~--~~l~~~~~~~p~~~~~~ 333 (678)
||.... ..+... -.+..++|+.|||..+.- ..+.+..++ +.+.
T Consensus 230 Gf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----FevG 305 (1187)
T COG1110 230 GFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEVG 305 (1187)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----CccC
Confidence 333211 111111 123468999999987542 222333222 1111
Q ss_pred CCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEecc---HHHHHHHHHHHhhcCCceeeccCCCCHHHHH
Q 005773 334 PSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGT---KQAAHRLKILFGLAALKAAELHGNLTQAQRL 410 (678)
Q Consensus 334 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s---~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~ 410 (678)
.......++.+.++.. .....+..+++.. +.+.|||++. ++.++.++.+|...|+++..+|+. ..
T Consensus 306 ~~~~~LRNIvD~y~~~------~~~e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~ 373 (1187)
T COG1110 306 SGGEGLRNIVDIYVES------ESLEKVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KE 373 (1187)
T ss_pred ccchhhhheeeeeccC------ccHHHHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----ch
Confidence 1111222333322221 2333344444443 5688999999 999999999999999999999983 26
Q ss_pred HHHHHHhcCCccEEEEc----ccccccCCCCC-ccEEEEcCCC
Q 005773 411 EALELFRKQHVDFLIAT----DVAARGLDIIG-VQTVINYACP 448 (678)
Q Consensus 411 ~~l~~F~~g~~~vLvaT----~~~~~GlDi~~-v~~VI~~d~p 448 (678)
+.++.|..|++++||++ .++-||||+|. ++++|+|+.|
T Consensus 374 ~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 374 EALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 78999999999999985 56789999998 8999999999
No 116
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=2.7e-23 Score=220.77 Aligned_cols=309 Identities=17% Similarity=0.145 Sum_probs=205.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh-hcCCc
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA-QFTDI 225 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~-~~~~~ 225 (678)
.....+.+.+..+-.++-+++.|.||||||++....+++.-+. ..+.+.+..|.|..|..++..+..-. ...|-
T Consensus 356 Pvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~-----~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYA-----DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred chHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccc-----cCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 3455666777777778888899999999999754444444332 34578899999999998877665533 22344
Q ss_pred eeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc-cCChHHHHHHHHHHCCCCcc
Q 005773 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQ 304 (678)
Q Consensus 226 ~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~i~~~~~~~~q 304 (678)
.|++.+...+... ....|-++|.|.|+...-. .-.|..+++||+||||.-. +.....-+....-.-..+.+
T Consensus 431 ~VGYsIRFEdvT~------~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlK 502 (1042)
T KOG0924|consen 431 TVGYSIRFEDVTS------EDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLK 502 (1042)
T ss_pred ccceEEEeeecCC------CceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccce
Confidence 4444443322221 2246889999999876544 4568899999999999643 43333333333333345788
Q ss_pred EEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHH---HHhhccCCceEEEEeccHH
Q 005773 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL---SLCSKTFTSKVIIFSGTKQ 381 (678)
Q Consensus 305 ~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~vLVF~~s~~ 381 (678)
+|+.||||.. ..+...+-+-|... +. ...-|.. ...........-...+. .++.....+-+|||.+..+
T Consensus 503 liVtSATm~a--~kf~nfFgn~p~f~-Ip-GRTyPV~----~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqe 574 (1042)
T KOG0924|consen 503 LIVTSATMDA--QKFSNFFGNCPQFT-IP-GRTYPVE----IMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQE 574 (1042)
T ss_pred EEEeeccccH--HHHHHHhCCCceee-ec-CCccceE----EEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCc
Confidence 9999999963 34444333334322 21 1111111 11111111222222222 2333445688999999877
Q ss_pred HHHHHHHHH----hh------cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCC----
Q 005773 382 AAHRLKILF----GL------AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC---- 447 (678)
Q Consensus 382 ~~~~l~~~L----~~------~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~---- 447 (678)
.++-.+..+ .. .++.+..|++.|++.-+.++++.-..|..+|+|||++|+..|.|+|+.+||..+.
T Consensus 575 diE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~k 654 (1042)
T KOG0924|consen 575 DIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLK 654 (1042)
T ss_pred chhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeee
Confidence 665544433 22 2678999999999999999999999999999999999999999999999996442
Q ss_pred --------------CCChhHHHHHHhhcccCCCceEEEEEeeCC
Q 005773 448 --------------PRDLTSYVHRVGRTARAGREGYAVTFVTDN 477 (678)
Q Consensus 448 --------------p~s~~~yiQr~GRagR~g~~G~~i~l~~~~ 477 (678)
|-|-..--||.|||||.| +|.||.+|+..
T Consensus 655 vyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 655 VYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 335566679999999977 99999999974
No 117
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.90 E-value=4.5e-22 Score=225.17 Aligned_cols=317 Identities=17% Similarity=0.187 Sum_probs=227.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH-hhcCCc
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI-AQFTDI 225 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l-~~~~~~ 225 (678)
..+..+..++..+.+++.++++|.||+|||++....+|.....+. ...++++..|+|-.|.-+++++..- +...+-
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~---~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~ 249 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG---AACNIICTQPRRISAISVAERVAKERGESLGE 249 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC---CCCeEEecCCchHHHHHHHHHHHHHhccccCC
Confidence 346778888888888999999999999999998888888877765 4567999999999998888776543 233455
Q ss_pred eeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc-cCChHHHHHHHHHHCCCCcc
Q 005773 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQ 304 (678)
Q Consensus 226 ~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~i~~~~~~~~q 304 (678)
.|++.++..+... ....+++||.|.|++.|.. ...+..+.++|+||+|.-. +..|.-.+.+.+-...+..+
T Consensus 250 ~VGYqvrl~~~~s------~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lk 321 (924)
T KOG0920|consen 250 EVGYQVRLESKRS------RETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLK 321 (924)
T ss_pred eeeEEEeeecccC------CceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCce
Confidence 6666655543322 2257999999999999987 4568899999999999754 55566555555545557899
Q ss_pred EEEEEeccChhHHHHHHHhcCCCeEEecCCCCCC----------------CCCceeEE-----------EE--Eechhhh
Q 005773 305 TMLFSATLTEDVDELIKLSLTKPLRLSADPSAKR----------------PSTLTEEV-----------VR--IRRMREV 355 (678)
Q Consensus 305 ~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~----------------~~~l~~~~-----------~~--~~~~~~~ 355 (678)
+|+||||+..+ ....++.....+.+...... .....+.. +. .......
T Consensus 322 vILMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 322 VILMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred EEEeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 99999999833 33333333322222110000 00000000 00 0000111
Q ss_pred hHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc-------CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcc
Q 005773 356 NQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA-------ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428 (678)
Q Consensus 356 ~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~-------~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~ 428 (678)
.-...+..++.....+.+|||.|+...+..+.+.|... .+-+..+|+.|+..++..++.....|..+|+++|+
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 12233445556666799999999999999999988642 25678899999999999999999999999999999
Q ss_pred cccccCCCCCccEEEE--------cCCCCC----------hhHHHHHHhhcccCCCceEEEEEeeCCc
Q 005773 429 VAARGLDIIGVQTVIN--------YACPRD----------LTSYVHRVGRTARAGREGYAVTFVTDND 478 (678)
Q Consensus 429 ~~~~GlDi~~v~~VI~--------~d~p~s----------~~~yiQr~GRagR~g~~G~~i~l~~~~d 478 (678)
+|+.+|.|++|-+||. ||+-.+ -..-.||.|||||. ++|.||.+|+...
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 9999999999999995 554443 33456999999995 6999999998754
No 118
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=4.1e-21 Score=217.29 Aligned_cols=124 Identities=19% Similarity=0.230 Sum_probs=109.3
Q ss_pred hHHHHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccccccc
Q 005773 356 NQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (678)
Q Consensus 356 ~~~~~l~~~~~--~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~G 433 (678)
.+...+...+. ...+.++||||+|+..++.|+.+|...++.+..||+ .+.+|...+..|..+...|+|||++|+||
T Consensus 582 eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRG 659 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRG 659 (1025)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCC
Confidence 34445555443 235789999999999999999999999999999997 68899999999999999999999999999
Q ss_pred CCCC---Ccc-----EEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHH
Q 005773 434 LDII---GVQ-----TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (678)
Q Consensus 434 lDi~---~v~-----~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~ 481 (678)
+||+ +|. +||++..|.|...|.|++|||||.|.+|.+++|++..|.-+
T Consensus 660 tDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lm 715 (1025)
T PRK12900 660 TDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELM 715 (1025)
T ss_pred CCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHH
Confidence 9998 564 45999999999999999999999999999999999887554
No 119
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.89 E-value=3.2e-22 Score=224.50 Aligned_cols=323 Identities=18% Similarity=0.217 Sum_probs=212.0
Q ss_pred CcHHHHHHHHHHhc----CCCEEEEcCCCchhhhhhhhchhHHHhcCC---CCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 005773 148 PTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRP---KRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (678)
Q Consensus 148 ~~~iQ~~~i~~ll~----g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~---~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 220 (678)
++.||++.++|+.- +-+.|+|..+|.|||++.+-.+....+.+. ..+.+...|||||. +|+--|...+.+++
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFF 1054 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhc
Confidence 57899999998642 348999999999999985433333344331 22345558999996 78888999999988
Q ss_pred hcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCC
Q 005773 221 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP 300 (678)
Q Consensus 221 ~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~ 300 (678)
.+ ++|...+|........+.-.++++|+|++|+.+.+-+..- .-..|.++|+||.|.|-|. ...+....+.+.
T Consensus 1055 pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l---~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1055 PF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYL---IKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred ch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHH---HhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 77 6677777775555444444556799999999997544321 1236789999999998873 344444444443
Q ss_pred CCccEEEEEeccC-hhHHHHHHHh-----------------cCCCeEEecCC----------------------------
Q 005773 301 KRRQTMLFSATLT-EDVDELIKLS-----------------LTKPLRLSADP---------------------------- 334 (678)
Q Consensus 301 ~~~q~il~SATl~-~~~~~l~~~~-----------------~~~p~~~~~~~---------------------------- 334 (678)
.+ ..+++|+|+- +++.++..++ +.+|+...-++
T Consensus 1128 a~-hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 AN-HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hc-ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33 3467777753 3333331111 00010000000
Q ss_pred -----CCCCCCCce--------------------------------------------------------eEEEEEec--
Q 005773 335 -----SAKRPSTLT--------------------------------------------------------EEVVRIRR-- 351 (678)
Q Consensus 335 -----~~~~~~~l~--------------------------------------------------------~~~~~~~~-- 351 (678)
-...|+.+. |......+
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 000000000 00000000
Q ss_pred -------------------hhhhhHHHHHHHH---hhc-------------cCCceEEEEeccHHHHHHHHHHHhhc---
Q 005773 352 -------------------MREVNQEAVLLSL---CSK-------------TFTSKVIIFSGTKQAAHRLKILFGLA--- 393 (678)
Q Consensus 352 -------------------~~~~~~~~~l~~~---~~~-------------~~~~~vLVF~~s~~~~~~l~~~L~~~--- 393 (678)
.....+...+..+ |.- ..++++||||+-+.+++.+.+-|-..
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 0000111112222 211 13579999999999999998865443
Q ss_pred CCceeeccCCCCHHHHHHHHHHHhcC-CccE-EEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCc--eE
Q 005773 394 ALKAAELHGNLTQAQRLEALELFRKQ-HVDF-LIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE--GY 469 (678)
Q Consensus 394 ~~~~~~lhg~l~~~~R~~~l~~F~~g-~~~v-LvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~--G~ 469 (678)
.+.+..+.|..++.+|.++.++|+++ .++| |++|-+++.|||+.|+++||+++-.|||...+|.+.||+|.|++ -.
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 34456899999999999999999998 6776 56889999999999999999999999999999999999999976 44
Q ss_pred EEEEeeCCcH
Q 005773 470 AVTFVTDNDR 479 (678)
Q Consensus 470 ~i~l~~~~d~ 479 (678)
+|.|++.+..
T Consensus 1447 VyRlItrGTL 1456 (1549)
T KOG0392|consen 1447 VYRLITRGTL 1456 (1549)
T ss_pred eeeehhcccH
Confidence 6777777763
No 120
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.88 E-value=2.4e-21 Score=209.92 Aligned_cols=323 Identities=17% Similarity=0.174 Sum_probs=214.5
Q ss_pred CcHHHHHHHHHHhc----CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 005773 148 PTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (678)
Q Consensus 148 ~~~iQ~~~i~~ll~----g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~ 223 (678)
+-+||.-.++|+.- +-+.|++..+|.|||.+ .+..|..|..... .+.-|||||...|-+ |.+.+.+|| +
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~---~gpHLVVvPsSTleN-WlrEf~kwC--P 472 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN---PGPHLVVVPSSTLEN-WLREFAKWC--P 472 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC---CCCcEEEecchhHHH-HHHHHHHhC--C
Confidence 78999999998753 45789999999999987 5666666655433 334699999988855 444555555 4
Q ss_pred CceeEEEecCCChHHHHHH-h---cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHC
Q 005773 224 DIRCCLVVGGLSTKMQETA-L---RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (678)
Q Consensus 224 ~~~v~~~~g~~~~~~~~~~-l---~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~ 299 (678)
.++|...+|.......... + ....+|+++||.....--.....+.-.++.++|+||+|.|-+.. ..++..++...
T Consensus 473 sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I~ 551 (941)
T KOG0389|consen 473 SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSIN 551 (941)
T ss_pred ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhcccc
Confidence 6888888887654433222 1 22579999998655321111112223578899999999887764 44445555443
Q ss_pred CCCccEEEEEeccC-hhHHHHHHHhc---C-----------------------------------------CCeE-----
Q 005773 300 PKRRQTMLFSATLT-EDVDELIKLSL---T-----------------------------------------KPLR----- 329 (678)
Q Consensus 300 ~~~~q~il~SATl~-~~~~~l~~~~~---~-----------------------------------------~p~~----- 329 (678)
..+.|++|+|+- +++.+++.+.. . .|..
T Consensus 552 --An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K 629 (941)
T KOG0389|consen 552 --ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLK 629 (941)
T ss_pred --ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445678888853 22333211100 0 0000
Q ss_pred -------------Eec-------------------------CCCCCCCC--Cc-------eeEE-----EEEe-------
Q 005773 330 -------------LSA-------------------------DPSAKRPS--TL-------TEEV-----VRIR------- 350 (678)
Q Consensus 330 -------------~~~-------------------------~~~~~~~~--~l-------~~~~-----~~~~------- 350 (678)
+.. ........ .+ .|.. +.-.
T Consensus 630 ~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak 709 (941)
T KOG0389|consen 630 SQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAK 709 (941)
T ss_pred HHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHH
Confidence 000 00000000 00 0000 0000
Q ss_pred ----------------------------------------------chhhhhHHHHHHHHhh--ccCCceEEEEeccHHH
Q 005773 351 ----------------------------------------------RMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQA 382 (678)
Q Consensus 351 ----------------------------------------------~~~~~~~~~~l~~~~~--~~~~~~vLVF~~s~~~ 382 (678)
.--...+...|..++. ...+.+||||.+...+
T Consensus 710 ~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqm 789 (941)
T KOG0389|consen 710 RILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQM 789 (941)
T ss_pred HHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHH
Confidence 0000111112222222 2246899999999999
Q ss_pred HHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC--ccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhh
Q 005773 383 AHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH--VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGR 460 (678)
Q Consensus 383 ~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~--~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GR 460 (678)
.+.|..+|...++.+..|.|.+....|..++..|...+ +-+|++|-+++-|||+..+++||.||+..||-...|.-.|
T Consensus 790 LDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDR 869 (941)
T KOG0389|consen 790 LDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDR 869 (941)
T ss_pred HHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHH
Confidence 99999999999999999999999999999999999765 3479999999999999999999999999999999999999
Q ss_pred cccCCC--ceEEEEEeeCCcHH
Q 005773 461 TARAGR--EGYAVTFVTDNDRS 480 (678)
Q Consensus 461 agR~g~--~G~~i~l~~~~d~~ 480 (678)
++|.|+ +..++.|++++...
T Consensus 870 cHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 870 CHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred HHhhCCcceeEEEEEEecCcHH
Confidence 999995 57788899988743
No 121
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=1.3e-22 Score=224.48 Aligned_cols=341 Identities=15% Similarity=0.169 Sum_probs=221.2
Q ss_pred CCCCcHHHHHHHHHHhc----CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 005773 145 YSKPTPIQAACIPLALT----GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (678)
Q Consensus 145 ~~~~~~iQ~~~i~~ll~----g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 220 (678)
-..+.+||...+.|+.+ +-+.|++..||.|||.+ .+.++..++...+- .+..|||||+..|.++. ..|..|+
T Consensus 392 GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~--~GP~LvivPlstL~NW~-~Ef~kWa 467 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQM--QGPFLIIVPLSTLVNWS-SEFPKWA 467 (1157)
T ss_pred CCCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHccc--CCCeEEeccccccCCch-hhccccc
Confidence 34789999999999875 23789999999999987 78888888776543 33479999999997743 3444432
Q ss_pred hcCCceeEEEecCCChH--HHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHH
Q 005773 221 QFTDIRCCLVVGGLSTK--MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298 (678)
Q Consensus 221 ~~~~~~v~~~~g~~~~~--~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~ 298 (678)
+.+..+...|..... .......+.++|+++|++.+.. ....+.--+|.++||||.|+|.+ +...+...++.
T Consensus 468 --PSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKN--a~~KLt~~L~t 540 (1157)
T KOG0386|consen 468 --PSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKN--AICKLTDTLNT 540 (1157)
T ss_pred --cceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccc--hhhHHHHHhhc
Confidence 344444434432111 1223344678999999998854 22122334688999999999876 33333333332
Q ss_pred CCCCccEEEEEeccChh----HHHH-------------------------------------------------------
Q 005773 299 CPKRRQTMLFSATLTED----VDEL------------------------------------------------------- 319 (678)
Q Consensus 299 ~~~~~q~il~SATl~~~----~~~l------------------------------------------------------- 319 (678)
.......+++|+|+-.+ +..+
T Consensus 541 ~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRR 620 (1157)
T KOG0386|consen 541 HYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRR 620 (1157)
T ss_pred cccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHh
Confidence 22223334444443200 0000
Q ss_pred ----------------------------------------------------------HHHhcCCCeEEecCCCCCCCCC
Q 005773 320 ----------------------------------------------------------IKLSLTKPLRLSADPSAKRPST 341 (678)
Q Consensus 320 ----------------------------------------------------------~~~~~~~p~~~~~~~~~~~~~~ 341 (678)
++..|+.|..+........+
T Consensus 621 lKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~-- 698 (1157)
T KOG0386|consen 621 LKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTL-- 698 (1157)
T ss_pred hhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccccc--
Confidence 11112222111000000000
Q ss_pred ceeEEEEEechhhhhHHHHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC
Q 005773 342 LTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ 419 (678)
Q Consensus 342 l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g 419 (678)
.+-...-.+...+..++..++. +..+++||+||........|..||...++.+..+.|.+...+|...+..|+..
T Consensus 699 ---~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~P 775 (1157)
T KOG0386|consen 699 ---HYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAP 775 (1157)
T ss_pred ---ccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCC
Confidence 0000011223344455555544 44589999999999999999999999999999999999999999999999964
Q ss_pred C---ccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHH--hcCccc
Q 005773 420 H---VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR--AGSKLK 494 (678)
Q Consensus 420 ~---~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~--~~~~~~ 494 (678)
. +.+|++|.+.+.|+|+..+++||.||..|||..+.|+..|++|.|+...|.++....-.+..+.|... .+..+.
T Consensus 776 ds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d 855 (1157)
T KOG0386|consen 776 DSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVD 855 (1157)
T ss_pred CCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCch
Confidence 3 55899999999999999999999999999999999999999999987666666554444444444332 334444
Q ss_pred hhhhhhh
Q 005773 495 SRIVAEQ 501 (678)
Q Consensus 495 ~~~~~~~ 501 (678)
.+++...
T Consensus 856 ~kviqag 862 (1157)
T KOG0386|consen 856 GKVIQAG 862 (1157)
T ss_pred Hhhhhcc
Confidence 4444443
No 122
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=2.3e-21 Score=224.40 Aligned_cols=328 Identities=20% Similarity=0.198 Sum_probs=216.2
Q ss_pred CcHHHHHHHHHHhcC---C-CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 005773 148 PTPIQAACIPLALTG---R-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (678)
Q Consensus 148 ~~~iQ~~~i~~ll~g---~-dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~ 223 (678)
..+.|..++..++.. . .+++.||||+|||.+.+++++..+... . ....+++++.|+++++.++++.+.......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~-~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-I-KLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-c-cccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 488999999988874 4 788999999999999888888776553 1 246789999999999999999999876655
Q ss_pred CceeEEEecCCChHHHHHH--------------hcCCCCEEEECchHHHHHHhccCccC-C--CCeeEEEEeCCcccccC
Q 005773 224 DIRCCLVVGGLSTKMQETA--------------LRSMPDIVVATPGRMIDHLRNSMSVD-L--DDLAVLILDEADRLLEL 286 (678)
Q Consensus 224 ~~~v~~~~g~~~~~~~~~~--------------l~~~~dIiv~Tp~~L~~~l~~~~~~~-l--~~i~~lVvDEah~ll~~ 286 (678)
++.....+|.......... ......++++||-.+.........+. + -..+++|+||+|.+-..
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 4433322333221111100 00113455556555544222211111 1 13468999999988765
Q ss_pred ChHHHHHHHHHHC-CCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEe-chhhhhH---HHHH
Q 005773 287 GFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR-RMREVNQ---EAVL 361 (678)
Q Consensus 287 gf~~~i~~i~~~~-~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~---~~~l 361 (678)
.....+..++..+ ..+..+|++|||+|+.+.+.+...+.....+....... .......+... ....... ....
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~ 431 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFC--PKEDEPGLKRKERVDVEDGPQEELIE 431 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccccc--ccccccccccccchhhhhhhhHhhhh
Confidence 3222222222222 24677999999999999998888776654443321100 00011111110 0011111 0111
Q ss_pred HHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHh----cCCccEEEEcccccccCCCC
Q 005773 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR----KQHVDFLIATDVAARGLDII 437 (678)
Q Consensus 362 ~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~----~g~~~vLvaT~~~~~GlDi~ 437 (678)
........+.+++|.|||+..|..++..|+..+.++..+||.+...+|.+.++.+. .+...|+|||++++-|+||
T Consensus 432 ~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi- 510 (733)
T COG1203 432 LISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI- 510 (733)
T ss_pred cchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-
Confidence 11122344689999999999999999999998889999999999999988888654 4677899999999999999
Q ss_pred CccEEEEcCCCCChhHHHHHHhhcccCC--CceEEEEEeeCCcHHHH
Q 005773 438 GVQTVINYACPRDLTSYVHRVGRTARAG--REGYAVTFVTDNDRSLL 482 (678)
Q Consensus 438 ~v~~VI~~d~p~s~~~yiQr~GRagR~g--~~G~~i~l~~~~d~~~l 482 (678)
+.+++|-=-.| +.+.+||+||++|.| ..|.++++.........
T Consensus 511 dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~ 555 (733)
T COG1203 511 DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYL 555 (733)
T ss_pred ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCCCch
Confidence 48877754444 889999999999988 57888887665543333
No 123
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.86 E-value=1.2e-19 Score=214.29 Aligned_cols=332 Identities=19% Similarity=0.208 Sum_probs=203.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHH----HHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHH
Q 005773 132 LSRPLLRACEALGYSKPTPIQAACIP----LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (678)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~iQ~~~i~----~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~ 207 (678)
+++.+.+.+...||. ++|.|.+.+. .+..++++++.||||+|||++|++|++.... ++.+|+|.+||++
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~------~~~~vvi~t~t~~ 303 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI------TEKPVVISTNTKV 303 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc------CCCeEEEEeCcHH
Confidence 445677788888998 8999997665 5566899999999999999999999987654 2347999999999
Q ss_pred HHHHHHH-HHHHHhhcCC--ceeEEEecCCChH---H-------------------------------------------
Q 005773 208 LAVQVHS-MIEKIAQFTD--IRCCLVVGGLSTK---M------------------------------------------- 238 (678)
Q Consensus 208 La~Q~~~-~~~~l~~~~~--~~v~~~~g~~~~~---~------------------------------------------- 238 (678)
|..|+.. .+..+.+..+ +++..+.|+...- .
T Consensus 304 Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~ 383 (850)
T TIGR01407 304 LQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNK 383 (850)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcch
Confidence 9999865 5555554433 6666666553210 0
Q ss_pred -HHHH------------------------hcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccC-------
Q 005773 239 -QETA------------------------LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL------- 286 (678)
Q Consensus 239 -~~~~------------------------l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~------- 286 (678)
.|.. ....++|||+....|+..+..... .+....++||||||++.+.
T Consensus 384 ~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~-ilp~~~~lIiDEAH~L~d~a~~~~~~ 462 (850)
T TIGR01407 384 MFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPE-LFPSFRDLIIDEAHHLPDIAENQLQE 462 (850)
T ss_pred hhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccc-cCCCCCEEEEECcchHHHHHHHHhcc
Confidence 0000 012278999999999887754322 3455689999999996420
Q ss_pred Ch-----HHH-------------------------------------------------------------HHHH---HH
Q 005773 287 GF-----SAE-------------------------------------------------------------IHEL---VR 297 (678)
Q Consensus 287 gf-----~~~-------------------------------------------------------------i~~i---~~ 297 (678)
.+ ... ...+ +.
T Consensus 463 ~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~ 542 (850)
T TIGR01407 463 ELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDL 542 (850)
T ss_pred eeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 00 000 0000 00
Q ss_pred H-----------C-------------------------------------CCCccEEEEEeccCh--hHHHHHH-HhcCC
Q 005773 298 L-----------C-------------------------------------PKRRQTMLFSATLTE--DVDELIK-LSLTK 326 (678)
Q Consensus 298 ~-----------~-------------------------------------~~~~q~il~SATl~~--~~~~l~~-~~~~~ 326 (678)
. + ++...+|++|||++. ....+.. +.+..
T Consensus 543 ~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~ 622 (850)
T TIGR01407 543 ALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTD 622 (850)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCc
Confidence 0 0 012357899999973 2222222 22222
Q ss_pred CeEEecCCCCCCCCCc-eeEEEEEec----h----hhhhH---HHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc-
Q 005773 327 PLRLSADPSAKRPSTL-TEEVVRIRR----M----REVNQ---EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA- 393 (678)
Q Consensus 327 p~~~~~~~~~~~~~~l-~~~~~~~~~----~----~~~~~---~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~- 393 (678)
....... ..|... .+..+.+.. . ..... ...+..++ ...++++|||++|+..++.++..|...
T Consensus 623 ~~~~~~~---~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~-~~~~g~~LVlftS~~~l~~v~~~L~~~~ 698 (850)
T TIGR01407 623 VHFNTIE---PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEIT-AITSPKILVLFTSYEMLHMVYDMLNELP 698 (850)
T ss_pred cccceec---CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCCEEEEeCCHHHHHHHHHHHhhhc
Confidence 1111111 111111 111111111 0 01111 11222222 234579999999999999999998752
Q ss_pred -CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcc--EEEEcCCCCC----h---------------
Q 005773 394 -ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ--TVINYACPRD----L--------------- 451 (678)
Q Consensus 394 -~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~--~VI~~d~p~s----~--------------- 451 (678)
......+..+.. ..|..+++.|++|+..||++|+.+.+|||+|+.. +||...+|.. +
T Consensus 699 ~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~ 777 (850)
T TIGR01407 699 EFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKN 777 (850)
T ss_pred cccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 112223333333 5788999999999999999999999999999966 5777777741 1
Q ss_pred -----------hHHHHHHhhcccCCCceEEEEEeeC
Q 005773 452 -----------TSYVHRVGRTARAGREGYAVTFVTD 476 (678)
Q Consensus 452 -----------~~yiQr~GRagR~g~~G~~i~l~~~ 476 (678)
..+.|.+||.-|.....-++++++.
T Consensus 778 ~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 778 PFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred chHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 2235999999997654334444444
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=8e-19 Score=193.78 Aligned_cols=320 Identities=22% Similarity=0.242 Sum_probs=218.1
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
+|. .|+++|.-+.-.++.|+ |+.+.||+|||++..+|++...+. +..|-|++|+--||.|-++++..+..+
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~------G~~VhvvT~NdyLA~RDae~m~~ly~~ 145 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ------GRRVHVITVNDYLARRDAEWMGPLYEA 145 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc------CCCeEEEcCCHHHHHHHHHHHHHHHHh
Confidence 455 48999999998888774 779999999999999888766543 445899999999999999999999999
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccC-----ccCCCCeeEEEEeCCcccc-cC--------C
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-EL--------G 287 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~ll-~~--------g 287 (678)
.|++|+++.+..+........ .+||+++|..-| .++|+... ......+.+.||||+|.++ +. |
T Consensus 146 LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg 223 (764)
T PRK12326 146 LGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAG 223 (764)
T ss_pred cCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeC
Confidence 999999999988776655554 479999998654 33333321 2234568899999999843 10 0
Q ss_pred ------hHHHHHHHHHHCC---------------------------------------------------------C---
Q 005773 288 ------FSAEIHELVRLCP---------------------------------------------------------K--- 301 (678)
Q Consensus 288 ------f~~~i~~i~~~~~---------------------------------------------------------~--- 301 (678)
....+..+...+. +
T Consensus 224 ~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~d 303 (764)
T PRK12326 224 STPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVH 303 (764)
T ss_pred CCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCc
Confidence 0000111111000 0
Q ss_pred ----------------------------------------------------------CccEEEEEeccChhHHHHHHHh
Q 005773 302 ----------------------------------------------------------RRQTMLFSATLTEDVDELIKLS 323 (678)
Q Consensus 302 ----------------------------------------------------------~~q~il~SATl~~~~~~l~~~~ 323 (678)
-..+.+||+|......++...+
T Consensus 304 YiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY 383 (764)
T PRK12326 304 YIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFY 383 (764)
T ss_pred EEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHh
Confidence 0245677777766555555443
Q ss_pred cCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHH-Hhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceeecc
Q 005773 324 LTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS-LCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 401 (678)
Q Consensus 324 ~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lh 401 (678)
--..+.+ +.. .|..-...-..+.. ....+...+.. +.. ...+.||||.|.|....+.++.+|...+++...|+
T Consensus 384 ~l~Vv~I---Ptn-kp~~R~d~~d~iy~-t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLN 458 (764)
T PRK12326 384 DLGVSVI---PPN-KPNIREDEADRVYA-TAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLN 458 (764)
T ss_pred CCcEEEC---CCC-CCceeecCCCceEe-CHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeec
Confidence 3222211 111 12111100001111 12223333322 222 34578999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCC-ccEEEEcccccccCCCC---------------CccEEEEcCCCCChhHHHHHHhhcccCC
Q 005773 402 GNLTQAQRLEALELFRKQH-VDFLIATDVAARGLDII---------------GVQTVINYACPRDLTSYVHRVGRTARAG 465 (678)
Q Consensus 402 g~l~~~~R~~~l~~F~~g~-~~vLvaT~~~~~GlDi~---------------~v~~VI~~d~p~s~~~yiQr~GRagR~g 465 (678)
+.-...+ ..++. ..|+ -.|.|||+.|+||.||. |==|||-...|.|..--.|-.||+||.|
T Consensus 459 Ak~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG 535 (764)
T PRK12326 459 AKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG 535 (764)
T ss_pred cCchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC
Confidence 8754333 22222 2354 45999999999999995 2348999999999999999999999999
Q ss_pred CceEEEEEeeCCcHHH
Q 005773 466 REGYAVTFVTDNDRSL 481 (678)
Q Consensus 466 ~~G~~i~l~~~~d~~~ 481 (678)
.+|.+..|++-.|.-+
T Consensus 536 DpGss~f~lSleDdl~ 551 (764)
T PRK12326 536 DPGSSVFFVSLEDDVV 551 (764)
T ss_pred CCCceeEEEEcchhHH
Confidence 9999999999877544
No 125
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.85 E-value=2.1e-19 Score=200.52 Aligned_cols=324 Identities=18% Similarity=0.176 Sum_probs=206.3
Q ss_pred CCcHHHHHHHHHHhc---C-------CCEEEEcCCCchhhhhhhhchhHHHhcCCCC--CCCeEEEEEcCcHHHHHHHHH
Q 005773 147 KPTPIQAACIPLALT---G-------RDICGSAITGSGKTAAFALPTLERLLYRPKR--IPAIRVLILTPTRELAVQVHS 214 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~---g-------~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~~~vLIl~Ptr~La~Q~~~ 214 (678)
.++|+|.+++..+.. | ..+|++..+|+|||+. +++.+..++..... ..-.+.|||+|. .|+.-|++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 489999999988653 2 3477889999999998 67777666654321 112568999996 77788888
Q ss_pred HHHHHhhcCCceeEEEecCCCh--HHHHHHh-----cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCC
Q 005773 215 MIEKIAQFTDIRCCLVVGGLST--KMQETAL-----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG 287 (678)
Q Consensus 215 ~~~~l~~~~~~~v~~~~g~~~~--~~~~~~l-----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g 287 (678)
.|.+|.....+....++|.... ......+ ....-|++.+++.+.++... +.+..+++||+||+|++-+..
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~~ 392 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNSD 392 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccchh
Confidence 8888866556677777776654 1111111 11235888899999876664 446688999999999976632
Q ss_pred hHHHHHHHHHHCCCCccEEEEEeccC-hhHHHHHHHh-cCCCeEEe----------------------------------
Q 005773 288 FSAEIHELVRLCPKRRQTMLFSATLT-EDVDELIKLS-LTKPLRLS---------------------------------- 331 (678)
Q Consensus 288 f~~~i~~i~~~~~~~~q~il~SATl~-~~~~~l~~~~-~~~p~~~~---------------------------------- 331 (678)
..+...+..+. .+..|++|+|+- +++.+..... +.+|-.+.
T Consensus 393 --s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 393 --SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred --hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 22233333332 344577777753 2222221110 00010000
Q ss_pred -------------cCCCCCCCCCceeEEEEEec-----------------------------------------------
Q 005773 332 -------------ADPSAKRPSTLTEEVVRIRR----------------------------------------------- 351 (678)
Q Consensus 332 -------------~~~~~~~~~~l~~~~~~~~~----------------------------------------------- 351 (678)
........+.+..+++.+..
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 00000001111111111110
Q ss_pred ------------------------hhhhhHHHHHHHHh---hccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCC
Q 005773 352 ------------------------MREVNQEAVLLSLC---SKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNL 404 (678)
Q Consensus 352 ------------------------~~~~~~~~~l~~~~---~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l 404 (678)
.....+...|..++ .......+.+..|.+...+.+...++..|..+..|||.|
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~ 629 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKT 629 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCC
Confidence 00111222233332 122223455555667777777788888899999999999
Q ss_pred CHHHHHHHHHHHhcCCc---cEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEE--EEEeeCCc
Q 005773 405 TQAQRLEALELFRKQHV---DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYA--VTFVTDND 478 (678)
Q Consensus 405 ~~~~R~~~l~~F~~g~~---~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~--i~l~~~~d 478 (678)
+..+|..+++.|++... -+|++|-+.+.||++-|++.||.||++|||..-.|+++|+.|.|++-.| |.|++.+.
T Consensus 630 ~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 630 SIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCC
Confidence 99999999999997543 3678889999999999999999999999999999999999999977555 45566654
No 126
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.84 E-value=5.4e-19 Score=198.54 Aligned_cols=322 Identities=20% Similarity=0.253 Sum_probs=210.3
Q ss_pred CCcHHHHHHHHHHhcC----CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 147 KPTPIQAACIPLALTG----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g----~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
.+++-|+.++..+... +-.++.|.||||||-+|+ .+++..+.. +..+|||+|-..|..|+.+.|+...
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl-~~i~~~L~~-----GkqvLvLVPEI~Ltpq~~~rf~~rF-- 269 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYL-EAIAKVLAQ-----GKQVLVLVPEIALTPQLLARFKARF-- 269 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHH-HHHHHHHHc-----CCEEEEEeccccchHHHHHHHHHHh--
Confidence 5788999999998766 578899999999999874 455554443 4569999999999999998888754
Q ss_pred CCceeEEEecCCChHHHHH----HhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc-----cCChHHHHH
Q 005773 223 TDIRCCLVVGGLSTKMQET----ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-----ELGFSAEIH 293 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~----~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-----~~gf~~~i~ 293 (678)
+.++..++++.+...... ...+...|||+|=--| ...+.++.+|||||=|.-. ...+..+-.
T Consensus 270 -g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl--------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdv 340 (730)
T COG1198 270 -GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL--------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDV 340 (730)
T ss_pred -CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh--------cCchhhccEEEEeccccccccCCcCCCcCHHHH
Confidence 578888999887665433 3346789999992222 3357899999999999754 122334434
Q ss_pred HHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhh----HHHHHHHHhh-cc
Q 005773 294 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN----QEAVLLSLCS-KT 368 (678)
Q Consensus 294 ~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~l~~~~~-~~ 368 (678)
.+++....+.++|+-|||++-+....+... ....+...............++..+...... ....+..+-. -.
T Consensus 341 A~~Ra~~~~~pvvLgSATPSLES~~~~~~g--~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~ 418 (730)
T COG1198 341 AVLRAKKENAPVVLGSATPSLESYANAESG--KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLE 418 (730)
T ss_pred HHHHHHHhCCCEEEecCCCCHHHHHhhhcC--ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHh
Confidence 455555567889999999875544433221 1111221111111111111122222111111 1122222211 11
Q ss_pred CCceEEEEeccHHH------------------------------------------------------------HHHHHH
Q 005773 369 FTSKVIIFSGTKQA------------------------------------------------------------AHRLKI 388 (678)
Q Consensus 369 ~~~~vLVF~~s~~~------------------------------------------------------------~~~l~~ 388 (678)
.+..+|||.|.+.- .+++.+
T Consensus 419 ~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteriee 498 (730)
T COG1198 419 RGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEE 498 (730)
T ss_pred cCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHH
Confidence 23445555544321 123333
Q ss_pred HHhhc--CCceeeccCCCCHHH--HHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCC------------Chh
Q 005773 389 LFGLA--ALKAAELHGNLTQAQ--RLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR------------DLT 452 (678)
Q Consensus 389 ~L~~~--~~~~~~lhg~l~~~~--R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~------------s~~ 452 (678)
.|... +.++..+.++.+... -...+..|.+|+.+|||.|++++.|.|+|+++.|...|... ..+
T Consensus 499 eL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fq 578 (730)
T COG1198 499 ELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQ 578 (730)
T ss_pred HHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHH
Confidence 33322 567788888776543 46789999999999999999999999999999988766554 345
Q ss_pred HHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHH
Q 005773 453 SYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (678)
Q Consensus 453 ~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~ 487 (678)
.+.|-.|||||++.+|.+++-....+...++.+..
T Consensus 579 ll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 579 LLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred HHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 67899999999999999999887777776666544
No 127
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.7e-19 Score=185.89 Aligned_cols=327 Identities=20% Similarity=0.166 Sum_probs=215.3
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
.+.|...+.++...+.++...--..+..+.+.+..+.+++-+++.|.||||||++....++....... ..|....
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-----~~v~CTQ 98 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-----TGVACTQ 98 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-----cceeecC
Confidence 67788889999988888776444456666777788888889999999999999875555665554433 3488999
Q ss_pred CcHHHHHHHHHHHHHHhh-cCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc
Q 005773 204 PTRELAVQVHSMIEKIAQ-FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (678)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~-~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (678)
|.|..|.++...+..-.. ..|-.|++.+...+-......+ -++|.+.|++...+ .-.++.+++||+||||.
T Consensus 99 prrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~L------ky~tDgmLlrEams--~p~l~~y~viiLDeahE 170 (699)
T KOG0925|consen 99 PRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLL------KYCTDGMLLREAMS--DPLLGRYGVIILDEAHE 170 (699)
T ss_pred chHHHHHHHHHHHHHHhccccchhccccccccccCChhHHH------HHhcchHHHHHHhh--CcccccccEEEechhhh
Confidence 999999988766554321 1233333322222211112222 27888988877665 34588999999999996
Q ss_pred cc-cCC-hHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEE--echhhhhHH
Q 005773 283 LL-ELG-FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI--RRMREVNQE 358 (678)
Q Consensus 283 ll-~~g-f~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~ 358 (678)
-. ... ..-.+.+++... +..++|++|||+.. . ..+.++.++..+.+.. .-|..+ ++.- .+.+.....
T Consensus 171 RtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a--~-Kfq~yf~n~Pll~vpg--~~PvEi---~Yt~e~erDylEaai 241 (699)
T KOG0925|consen 171 RTLATDILMGLLKEVVRNR-PDLKLVVMSATLDA--E-KFQRYFGNAPLLAVPG--THPVEI---FYTPEPERDYLEAAI 241 (699)
T ss_pred hhHHHHHHHHHHHHHHhhC-CCceEEEeecccch--H-HHHHHhCCCCeeecCC--CCceEE---EecCCCChhHHHHHH
Confidence 32 211 222334444444 48899999999853 2 2344555555554422 122111 1111 111222233
Q ss_pred HHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc---------CCceeeccCCCCHHHHHHHHHHHhc---C--CccEE
Q 005773 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA---------ALKAAELHGNLTQAQRLEALELFRK---Q--HVDFL 424 (678)
Q Consensus 359 ~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~---------~~~~~~lhg~l~~~~R~~~l~~F~~---g--~~~vL 424 (678)
..++.++....++-+|||..+.++.+..++.+... .+++..+| +.++.++++.... | ..+|+
T Consensus 242 rtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvV 317 (699)
T KOG0925|consen 242 RTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVV 317 (699)
T ss_pred HHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEE
Confidence 34455666666889999999999988887766521 35778888 4444444443321 2 35799
Q ss_pred EEcccccccCCCCCccEEEEcCC------------------CCChhHHHHHHhhcccCCCceEEEEEeeCC
Q 005773 425 IATDVAARGLDIIGVQTVINYAC------------------PRDLTSYVHRVGRTARAGREGYAVTFVTDN 477 (678)
Q Consensus 425 vaT~~~~~GlDi~~v~~VI~~d~------------------p~s~~~yiQr~GRagR~g~~G~~i~l~~~~ 477 (678)
|+|++++..+.|++|.+||.-++ |-|-.+-.||.||+||. ++|.|+.+|++.
T Consensus 318 vstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 318 VSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 99999999999999999996443 34667788999999995 699999999874
No 128
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=6.1e-18 Score=191.24 Aligned_cols=320 Identities=18% Similarity=0.213 Sum_probs=214.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
+|. .|+++|.-+--.+.. .-|+.+.||+|||+++.+|++-..+ .+..|-|++||--||.|-++++..+..+
T Consensus 79 lGm-~~ydVQliGg~~Lh~--G~iaEM~TGEGKTLvA~l~a~l~al------~G~~VhvvT~ndyLA~RD~e~m~~l~~~ 149 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHE--GKIAEMRTGEGKTLVGTLAVYLNAL------SGKGVHVVTVNDYLARRDANWMRPLYEF 149 (913)
T ss_pred hCC-CcchhHHHhhhHhcc--CccccccCCCCChHHHHHHHHHHHH------cCCCEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 353 478888766555544 4688999999999999999976553 3456899999999999999999999999
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccCcc-----CCCCeeEEEEeCCcccc-c--------CC
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLL-E--------LG 287 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~~~-----~l~~i~~lVvDEah~ll-~--------~g 287 (678)
.|++|+++.+..+......... ++|+++|..-| .++|+....+ ....+.++||||+|.+| + .|
T Consensus 150 lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg 227 (913)
T PRK13103 150 LGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISG 227 (913)
T ss_pred cCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecC
Confidence 9999999999887776665554 79999998776 4555443221 24778899999999854 1 00
Q ss_pred --------------hHH------------------------------------HHHHHH---------HHC---------
Q 005773 288 --------------FSA------------------------------------EIHELV---------RLC--------- 299 (678)
Q Consensus 288 --------------f~~------------------------------------~i~~i~---------~~~--------- 299 (678)
+.. .+..++ ..+
T Consensus 228 ~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~ 307 (913)
T PRK13103 228 QAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLL 307 (913)
T ss_pred CCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHH
Confidence 000 000000 000
Q ss_pred -------------CCC-------------------------------------------------------------ccE
Q 005773 300 -------------PKR-------------------------------------------------------------RQT 305 (678)
Q Consensus 300 -------------~~~-------------------------------------------------------------~q~ 305 (678)
.++ .++
T Consensus 308 ~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL 387 (913)
T PRK13103 308 THVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKL 387 (913)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchh
Confidence 000 134
Q ss_pred EEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhh--ccCCceEEEEeccHHHH
Q 005773 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS--KTFTSKVIIFSGTKQAA 383 (678)
Q Consensus 306 il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vLVF~~s~~~~ 383 (678)
.+||+|......++...+--..+.+....+..+. .....++ . ....+...+..-+. ...+.||||-+.|....
T Consensus 388 sGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~-D~~d~vy--~--t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~S 462 (913)
T PRK13103 388 SGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARK-DFNDLVY--L--TAEEKYAAIITDIKECMALGRPVLVGTATIETS 462 (913)
T ss_pred ccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccc-cCCCeEE--c--CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHH
Confidence 5666666555555444432222222211111110 1111111 1 12233333322222 34578999999999999
Q ss_pred HHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC-ccEEEEcccccccCCCC-------------------------
Q 005773 384 HRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH-VDFLIATDVAARGLDII------------------------- 437 (678)
Q Consensus 384 ~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~-~~vLvaT~~~~~GlDi~------------------------- 437 (678)
+.|+.+|...++..-.|+......+- .++. ..|+ -.|.|||+.|+||.||.
T Consensus 463 E~ls~~L~~~gi~h~VLNAk~~~~EA-~IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~ 539 (913)
T PRK13103 463 EHMSNLLKKEGIEHKVLNAKYHEKEA-EIIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKA 539 (913)
T ss_pred HHHHHHHHHcCCcHHHhccccchhHH-HHHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHH
Confidence 99999999999998888886543332 2222 3454 45999999999999994
Q ss_pred ------------CccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHH
Q 005773 438 ------------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (678)
Q Consensus 438 ------------~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~ 481 (678)
|==+||-...|.|-.--.|-.||+||.|.+|.+..|++-.|.-+
T Consensus 540 ~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~Lm 595 (913)
T PRK13103 540 DWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLM 595 (913)
T ss_pred HHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 22389999999999999999999999999999999999876544
No 129
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=1.6e-17 Score=185.81 Aligned_cols=319 Identities=19% Similarity=0.214 Sum_probs=213.8
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
+|. +|+++|.-+.-.+..| -|+.+.||-|||++..+|++-..+ .+..|-||+..--||..=.+++..+..+
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL------~GkgVhVVTvNdYLA~RDae~mg~vy~f 145 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNAL------TGKGVIVSTVNEYLAERDAEEMGKVFNF 145 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHh------cCCceEEEecchhhhhhhHHHHHHHHHH
Confidence 355 5889998887766666 479999999999999998854332 2445788899999999999999999999
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccCc-----cCCCCeeEEEEeCCcccc-cC--------C
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSMS-----VDLDDLAVLILDEADRLL-EL--------G 287 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~~-----~~l~~i~~lVvDEah~ll-~~--------g 287 (678)
.|++|+++..+.......... .+||+++|..-| .++|+.... .....+.+.||||+|.++ +. |
T Consensus 146 LGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg 223 (925)
T PRK12903 146 LGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISG 223 (925)
T ss_pred hCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccC
Confidence 999999998887776655544 479999998665 455554322 224667899999999854 10 0
Q ss_pred -------hHHHHHHHHHHCCC-------------------------------------------------------C---
Q 005773 288 -------FSAEIHELVRLCPK-------------------------------------------------------R--- 302 (678)
Q Consensus 288 -------f~~~i~~i~~~~~~-------------------------------------------------------~--- 302 (678)
+...+..+...+.. +
T Consensus 224 ~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dY 303 (925)
T PRK12903 224 GQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEY 303 (925)
T ss_pred CCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCce
Confidence 11111111111100 0
Q ss_pred ----------------------------------------------------------ccEEEEEeccChhHHHHHHHhc
Q 005773 303 ----------------------------------------------------------RQTMLFSATLTEDVDELIKLSL 324 (678)
Q Consensus 303 ----------------------------------------------------------~q~il~SATl~~~~~~l~~~~~ 324 (678)
.++-+||+|...+..++...+-
T Consensus 304 iV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~ 383 (925)
T PRK12903 304 IVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYN 383 (925)
T ss_pred EEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhC
Confidence 1345666666555555554433
Q ss_pred CCCeEEecCCCCCCCCCc-eeEEEEEechhhhhHHHHHHH-Hhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceeecc
Q 005773 325 TKPLRLSADPSAKRPSTL-TEEVVRIRRMREVNQEAVLLS-LCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELH 401 (678)
Q Consensus 325 ~~p~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lh 401 (678)
-..+.+.. .+|..- ...-..+. ....+...+.. +.. ...+.||||.|.|....+.|+.+|...|+....|+
T Consensus 384 l~Vv~IPT----nkP~~R~D~~d~iy~--t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLN 457 (925)
T PRK12903 384 MRVNVVPT----NKPVIRKDEPDSIFG--TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLN 457 (925)
T ss_pred CCEEECCC----CCCeeeeeCCCcEEE--cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeec
Confidence 22222211 112110 00001111 11222222222 222 23578999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHhcCC-ccEEEEcccccccCCCCCcc--------EEEEcCCCCChhHHHHHHhhcccCCCceEEEE
Q 005773 402 GNLTQAQRLEALELFRKQH-VDFLIATDVAARGLDIIGVQ--------TVINYACPRDLTSYVHRVGRTARAGREGYAVT 472 (678)
Q Consensus 402 g~l~~~~R~~~l~~F~~g~-~~vLvaT~~~~~GlDi~~v~--------~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~ 472 (678)
+... ++...+-. ..|+ -.|.|||++|+||.||.--. |||....|.|..---|..||+||.|.+|.+..
T Consensus 458 Ak~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f 534 (925)
T PRK12903 458 AKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRF 534 (925)
T ss_pred ccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceE
Confidence 8643 33222222 4564 45999999999999995322 89999999999999999999999999999999
Q ss_pred EeeCCcHHH
Q 005773 473 FVTDNDRSL 481 (678)
Q Consensus 473 l~~~~d~~~ 481 (678)
|++-.|.-+
T Consensus 535 ~lSLeD~L~ 543 (925)
T PRK12903 535 FISLDDQLF 543 (925)
T ss_pred EEecchHHH
Confidence 999877544
No 130
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.81 E-value=3.9e-18 Score=189.93 Aligned_cols=112 Identities=21% Similarity=0.337 Sum_probs=103.2
Q ss_pred ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC--ccEEEEcccccccCCCCCccEEEE
Q 005773 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH--VDFLIATDVAARGLDIIGVQTVIN 444 (678)
Q Consensus 367 ~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~--~~vLvaT~~~~~GlDi~~v~~VI~ 444 (678)
+..++++|||+....+.+.|..+|+..|+-+..|+|....++|..+++.|+... ++++++|...+.|||+.++++||+
T Consensus 1273 k~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvF 1352 (1958)
T KOG0391|consen 1273 KSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVF 1352 (1958)
T ss_pred HhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEE
Confidence 446899999999999999999999999999999999999999999999999875 568999999999999999999999
Q ss_pred cCCCCChhHHHHHHhhcccCCC--ceEEEEEeeCCc
Q 005773 445 YACPRDLTSYVHRVGRTARAGR--EGYAVTFVTDND 478 (678)
Q Consensus 445 ~d~p~s~~~yiQr~GRagR~g~--~G~~i~l~~~~d 478 (678)
||..||+.-.-|...|++|+|+ .-+.|.|++...
T Consensus 1353 YDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1353 YDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred ecCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 9999999999999999999885 467788888764
No 131
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.81 E-value=1.4e-18 Score=169.51 Aligned_cols=187 Identities=40% Similarity=0.597 Sum_probs=151.8
Q ss_pred HcCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 005773 142 ALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (678)
Q Consensus 142 ~~g~~~~~~iQ~~~i~~ll~g-~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 220 (678)
..++..|+++|.++++.++.+ +.++++++||||||.+++.+++..+.... ..++||++|++.++.|+...+..+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~----~~~~l~~~p~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK----GKRVLVLVPTRELAEQWAEELKKLG 78 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC----CCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 346778999999999999999 99999999999999988888888775432 3469999999999999999998876
Q ss_pred hcCCceeEEEecCCChHHHHHHhcCCC-CEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHC
Q 005773 221 QFTDIRCCLVVGGLSTKMQETALRSMP-DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (678)
Q Consensus 221 ~~~~~~v~~~~g~~~~~~~~~~l~~~~-dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~ 299 (678)
...........++.........+..+. +|+++||+.+...+.... .....+.++||||||.+....+...+..++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 79 PSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred ccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 654434444555555444555555555 999999999999887743 556788999999999998767888888898888
Q ss_pred CCCccEEEEEeccChhHHHHHHHhcCCCeEEecC
Q 005773 300 PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333 (678)
Q Consensus 300 ~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~ 333 (678)
+...+++++|||+++........++..++.+...
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 8889999999999999998888888876666553
No 132
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.81 E-value=5.4e-18 Score=194.44 Aligned_cols=301 Identities=19% Similarity=0.158 Sum_probs=177.2
Q ss_pred CcHHHHHHHHHHhc----------CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 005773 148 PTPIQAACIPLALT----------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (678)
Q Consensus 148 ~~~iQ~~~i~~ll~----------g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 217 (678)
++++|..++..++. .+..+++.+||||||++ ++.+...++.. ...++||||+|+.+|..|+.+.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t-~~~la~~l~~~---~~~~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLT-MLFAARKALEL---LKNPKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHH-HHHHHHHHHhh---cCCCeEEEEECcHHHHHHHHHHHH
Confidence 67889888877642 25799999999999987 34444444422 345789999999999999999998
Q ss_pred HHhhcCCceeEEEecCCChHHHHHHhc-CCCCEEEECchHHHHHHhcc-CccCCCCe-eEEEEeCCcccccCChHHHHHH
Q 005773 218 KIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNS-MSVDLDDL-AVLILDEADRLLELGFSAEIHE 294 (678)
Q Consensus 218 ~l~~~~~~~v~~~~g~~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~-~~~~l~~i-~~lVvDEah~ll~~gf~~~i~~ 294 (678)
.+.... ..+..+.......+. ....|+|+|...|...+... ..+....- -+||+||||+.....+...
T Consensus 315 ~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~--- 385 (667)
T TIGR00348 315 SLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKN--- 385 (667)
T ss_pred hhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHH---
Confidence 864311 111122222223333 24689999999997644321 11111111 2899999998653322222
Q ss_pred HHHHCCCCccEEEEEeccChhHHHHH-HHh---cCCCeEEecCCCCCCCCCceeEEE-E-------Eech----------
Q 005773 295 LVRLCPKRRQTMLFSATLTEDVDELI-KLS---LTKPLRLSADPSAKRPSTLTEEVV-R-------IRRM---------- 352 (678)
Q Consensus 295 i~~~~~~~~q~il~SATl~~~~~~l~-~~~---~~~p~~~~~~~~~~~~~~l~~~~~-~-------~~~~---------- 352 (678)
+.+.+| +...++|||||-....... ..+ ...++. ..........++.-.+. . +...
T Consensus 386 l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~-~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~ 463 (667)
T TIGR00348 386 LKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLH-RYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIF 463 (667)
T ss_pred HHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEE-EeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHH
Confidence 223444 4679999999953211100 011 111111 10000000000000000 0 0000
Q ss_pred -------hhhhH--------------------H----HHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhc-----C
Q 005773 353 -------REVNQ--------------------E----AVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLA-----A 394 (678)
Q Consensus 353 -------~~~~~--------------------~----~~l~~~~~--~~~~~~vLVF~~s~~~~~~l~~~L~~~-----~ 394 (678)
..... . .++..+.. ...+++++|||.++..|..+...|... +
T Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~ 543 (667)
T TIGR00348 464 ELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFE 543 (667)
T ss_pred HhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccC
Confidence 00000 0 00001111 122489999999999999999887654 2
Q ss_pred CceeeccCCCCHH---------------------HHHHHHHHHhc-CCccEEEEcccccccCCCCCccEEEEcCCCCChh
Q 005773 395 LKAAELHGNLTQA---------------------QRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYACPRDLT 452 (678)
Q Consensus 395 ~~~~~lhg~l~~~---------------------~R~~~l~~F~~-g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~ 452 (678)
.....+++..+.. ....++++|++ +..+|||.++.+..|+|.|.+++++..-+-.+ .
T Consensus 544 ~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h 622 (667)
T TIGR00348 544 ASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-H 622 (667)
T ss_pred CeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-c
Confidence 3455566543322 12468889976 67899999999999999999999987665554 5
Q ss_pred HHHHHHhhcccC
Q 005773 453 SYVHRVGRTARA 464 (678)
Q Consensus 453 ~yiQr~GRagR~ 464 (678)
.++|.+||+-|.
T Consensus 623 ~LlQai~R~nR~ 634 (667)
T TIGR00348 623 GLLQAIARTNRI 634 (667)
T ss_pred HHHHHHHHhccc
Confidence 689999999994
No 133
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.81 E-value=8.6e-19 Score=187.18 Aligned_cols=113 Identities=16% Similarity=0.246 Sum_probs=102.5
Q ss_pred ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC-ccEEEEcccccccCCCCCccEEEEc
Q 005773 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH-VDFLIATDVAARGLDIIGVQTVINY 445 (678)
Q Consensus 367 ~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~-~~vLvaT~~~~~GlDi~~v~~VI~~ 445 (678)
+..++++|+|++..++...+.+||...++....|.|.....+|..++..|.... +-+|++|.+.+.|||+..+++||+|
T Consensus 1041 kaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFY 1120 (1185)
T KOG0388|consen 1041 KAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFY 1120 (1185)
T ss_pred hcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEe
Confidence 345789999999999999999999999999999999999999999999999755 4478999999999999999999999
Q ss_pred CCCCChhHHHHHHhhcccCCCc--eEEEEEeeCCcH
Q 005773 446 ACPRDLTSYVHRVGRTARAGRE--GYAVTFVTDNDR 479 (678)
Q Consensus 446 d~p~s~~~yiQr~GRagR~g~~--G~~i~l~~~~d~ 479 (678)
|..|||....|.+.||+|.|+. ..+|.+++.+..
T Consensus 1121 dSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1121 DSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred cCCCCcchhhHHHHHHHhccCccceeeeeecccccH
Confidence 9999999999999999999864 567777777653
No 134
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.78 E-value=3.9e-18 Score=188.32 Aligned_cols=161 Identities=18% Similarity=0.177 Sum_probs=117.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCc-
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI- 225 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~- 225 (678)
.|..+|.+.+..+=.+...++.|||.+|||.+ ...+++.++...+ ..-||+++||++|++|+...+........+
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD---~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESD---SDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhhcC---CCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 38899999999999999999999999999986 7778888877654 346899999999999997776654433222
Q ss_pred eeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhcc--CccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCc
Q 005773 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS--MSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303 (678)
Q Consensus 226 ~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~--~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~ 303 (678)
+...+.|.....-+.. .-+|.|+|+-|+.|-..|... ......+++++|+||+|.+.+..-.-.+.+++...| +
T Consensus 587 rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~--C 662 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP--C 662 (1330)
T ss_pred cchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC--C
Confidence 2222233322221111 236899999999998877653 233478999999999999987554455566666554 5
Q ss_pred cEEEEEeccChh
Q 005773 304 QTMLFSATLTED 315 (678)
Q Consensus 304 q~il~SATl~~~ 315 (678)
.++++|||+.+.
T Consensus 663 P~L~LSATigN~ 674 (1330)
T KOG0949|consen 663 PFLVLSATIGNP 674 (1330)
T ss_pred CeeEEecccCCH
Confidence 689999998743
No 135
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.78 E-value=5.5e-18 Score=175.26 Aligned_cols=314 Identities=18% Similarity=0.236 Sum_probs=206.6
Q ss_pred CCCcHHHHHHHHHHhcC---CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 146 SKPTPIQAACIPLALTG---RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 146 ~~~~~iQ~~~i~~ll~g---~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
..++|+|..++..++.+ +..|+..|.|+|||++-.-++. .+ ..++||||.+...+.||...+..|+..
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti--------kK~clvLcts~VSVeQWkqQfk~wsti 371 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI--------KKSCLVLCTSAVSVEQWKQQFKQWSTI 371 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee--------cccEEEEecCccCHHHHHHHHHhhccc
Confidence 46899999999999874 6899999999999987544433 22 446999999999999999999988765
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccC-------ccCCCCeeEEEEeCCcccccCChHHHHHHH
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM-------SVDLDDLAVLILDEADRLLELGFSAEIHEL 295 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~-------~~~l~~i~~lVvDEah~ll~~gf~~~i~~i 295 (678)
.+-.++.++.... .....++.|+|+|+.++..--.+.. .+.-..|.++|+||+|.+-..-|+..+..+
T Consensus 372 ~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv 446 (776)
T KOG1123|consen 372 QDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIV 446 (776)
T ss_pred CccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHH
Confidence 5555555554432 2245678999999976632111100 112357999999999998877687777666
Q ss_pred HHHCCCCccEEEEEeccChhHHHHHHH-hcCCCeEEecC-----CCC------------C----------CCCCceeEEE
Q 005773 296 VRLCPKRRQTMLFSATLTEDVDELIKL-SLTKPLRLSAD-----PSA------------K----------RPSTLTEEVV 347 (678)
Q Consensus 296 ~~~~~~~~q~il~SATl~~~~~~l~~~-~~~~p~~~~~~-----~~~------------~----------~~~~l~~~~~ 347 (678)
-..+. +++|||+-.+-.....+ ++-.|-.+..+ ... . +...-.....
T Consensus 447 ~aHcK-----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lL 521 (776)
T KOG1123|consen 447 QAHCK-----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLL 521 (776)
T ss_pred HHHhh-----ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhhee
Confidence 66653 89999985321111100 11111110000 000 0 0000000011
Q ss_pred EEechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc-CCccEEEE
Q 005773 348 RIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK-QHVDFLIA 426 (678)
Q Consensus 348 ~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~-g~~~vLva 426 (678)
.+-....-.....|..++.+ .+.++|||....-.....+..|+. -.|+|.++|.+|+++++.|+- ..++-+.-
T Consensus 522 yvMNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 522 YVMNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred eecCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEE
Confidence 11111111222334444433 578999999988776666655532 367899999999999999985 46788888
Q ss_pred cccccccCCCCCccEEEEcCCCC-ChhHHHHHHhhcccCCC------ceEEEEEeeCCcHHHHHH
Q 005773 427 TDVAARGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGR------EGYAVTFVTDNDRSLLKA 484 (678)
Q Consensus 427 T~~~~~GlDi~~v~~VI~~d~p~-s~~~yiQr~GRagR~g~------~G~~i~l~~~~d~~~l~~ 484 (678)
+-++-..+|+|.++++|+..... |-.+=.||.||.-|+.+ ....|+|++.+...+...
T Consensus 596 SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YS 660 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYS 660 (776)
T ss_pred eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhh
Confidence 89999999999999999876654 56677899999888542 356788888887766544
No 136
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.77 E-value=2.7e-16 Score=177.23 Aligned_cols=131 Identities=26% Similarity=0.322 Sum_probs=98.8
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
+|+. |+++|.-+.-.+ .+.-|+.+.||.|||+++.+|++-..+ .+..|-||+++..||.+-++++..+..+
T Consensus 73 lG~r-~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL------~G~~VhVvT~NdyLA~RD~e~m~pvy~~ 143 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNAL------TGKGVHIVTVNDYLAKRDQEWMGQIYRF 143 (870)
T ss_pred hCCC-CCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHh------cCCceEEEeCCHHHHHHHHHHHHHHHHH
Confidence 4554 788887665444 456789999999999999999853332 2445899999999999999999999999
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccC-----ccCCCCeeEEEEeCCcccc
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL 284 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~ll 284 (678)
.|++|+++.++.+........ .+||+++|..-| .++|+... ......+.+.||||+|.++
T Consensus 144 LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 144 LGLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred cCCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 999999998887776655544 369999998543 23333321 1235668899999999843
No 137
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.77 E-value=1.5e-17 Score=183.27 Aligned_cols=298 Identities=20% Similarity=0.233 Sum_probs=190.2
Q ss_pred CCCcHHHHHHHHHHhc----C-CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 005773 146 SKPTPIQAACIPLALT----G-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (678)
Q Consensus 146 ~~~~~iQ~~~i~~ll~----g-~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 220 (678)
..++.+|..||..+.. | +-+|+.+.||+|||.+ .+.++.+|+.... ..+||+|+-++.|+.|.+..+..+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~~~---~KRVLFLaDR~~Lv~QA~~af~~~~ 239 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKSGW---VKRVLFLADRNALVDQAYGAFEDFL 239 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhcch---hheeeEEechHHHHHHHHHHHHHhC
Confidence 3589999999876553 4 3588999999999987 5777777776543 4579999999999999999888876
Q ss_pred hcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhcc----CccCCCCeeEEEEeCCcccccCChHHHHHHHH
Q 005773 221 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS----MSVDLDDLAVLILDEADRLLELGFSAEIHELV 296 (678)
Q Consensus 221 ~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~----~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~ 296 (678)
.+. -.+..+.+... ...+.|.|+|+..|...+... ..+....+++|||||||+=.-..+. .|+
T Consensus 240 P~~-~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~----~I~ 306 (875)
T COG4096 240 PFG-TKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWS----SIL 306 (875)
T ss_pred CCc-cceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhH----HHH
Confidence 542 22222222111 114689999999998877654 2345677999999999985432222 333
Q ss_pred HHCCCCccEEEEEeccChhHHHHHHHhc-CCCeEE--------------------ec--CCCCCCCCCce----------
Q 005773 297 RLCPKRRQTMLFSATLTEDVDELIKLSL-TKPLRL--------------------SA--DPSAKRPSTLT---------- 343 (678)
Q Consensus 297 ~~~~~~~q~il~SATl~~~~~~l~~~~~-~~p~~~--------------------~~--~~~~~~~~~l~---------- 343 (678)
..+..- ++++|||+...+....-.++ ..|+.. .. ...+-.+..+.
T Consensus 307 dYFdA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i 384 (875)
T COG4096 307 DYFDAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAI 384 (875)
T ss_pred HHHHHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcccc
Confidence 333222 24448998765444333333 333221 10 01111111110
Q ss_pred ---eEEEEEe--------chhhhhHHHHHHHHhhc--cC--CceEEEEeccHHHHHHHHHHHhhc-----CCceeeccCC
Q 005773 344 ---EEVVRIR--------RMREVNQEAVLLSLCSK--TF--TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGN 403 (678)
Q Consensus 344 ---~~~~~~~--------~~~~~~~~~~l~~~~~~--~~--~~~vLVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~ 403 (678)
....... ......-...+...+.. .. .+++||||.+...|+++...|... +--+..+.|.
T Consensus 385 ~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d 464 (875)
T COG4096 385 DEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGD 464 (875)
T ss_pred CcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEecc
Confidence 0000000 00000111122333333 11 478999999999999999998765 2345566665
Q ss_pred CCHHHHHHHHHHHhc--CCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccC
Q 005773 404 LTQAQRLEALELFRK--QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464 (678)
Q Consensus 404 l~~~~R~~~l~~F~~--g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~ 464 (678)
..+ -...+..|.. .-..|.|+.+++..|+|+|.|..+|++-.-.|..-|.|++||.-|.
T Consensus 465 ~~~--~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 465 AEQ--AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred chh--hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 433 3344556654 2345899999999999999999999999999999999999999883
No 138
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.77 E-value=1.2e-16 Score=186.38 Aligned_cols=325 Identities=19% Similarity=0.249 Sum_probs=197.1
Q ss_pred HcCCCCCcHHHHHHHHHH----hcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHH-HHHH
Q 005773 142 ALGYSKPTPIQAACIPLA----LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV-HSMI 216 (678)
Q Consensus 142 ~~g~~~~~~iQ~~~i~~l----l~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~-~~~~ 216 (678)
-.||. +++-|.+.+..+ ..++.+++.|+||+|||++|++|++... .+.++||++||++|+.|+ ...+
T Consensus 241 ~~~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------~~~~vvI~t~T~~Lq~Ql~~~~i 312 (820)
T PRK07246 241 LLGLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------DQRQIIVSVPTKILQDQIMAEEV 312 (820)
T ss_pred cCCCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------CCCcEEEEeCcHHHHHHHHHHHH
Confidence 34665 899998844433 3467899999999999999999988753 245799999999999999 4778
Q ss_pred HHHhhcCCceeEEEecCCChH---HH--------------------------------------------HHHh------
Q 005773 217 EKIAQFTDIRCCLVVGGLSTK---MQ--------------------------------------------ETAL------ 243 (678)
Q Consensus 217 ~~l~~~~~~~v~~~~g~~~~~---~~--------------------------------------------~~~l------ 243 (678)
..+.+..++++..+.|+...- .. |..+
T Consensus 313 ~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~ 392 (820)
T PRK07246 313 KAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNL 392 (820)
T ss_pred HHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCC
Confidence 888877788877777664311 00 0000
Q ss_pred ------------------cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCC-----h----H---HH--
Q 005773 244 ------------------RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-----F----S---AE-- 291 (678)
Q Consensus 244 ------------------~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g-----f----~---~~-- 291 (678)
...+||||+.-..|+.++.... .+...+++||||||++.+.. . . ..
T Consensus 393 ~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~ 470 (820)
T PRK07246 393 SQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQ 470 (820)
T ss_pred CCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHH
Confidence 1127899999988887765432 25678999999999964210 0 0 00
Q ss_pred -----------------------------------------HHH-------H--------HHH-----------------
Q 005773 292 -----------------------------------------IHE-------L--------VRL----------------- 298 (678)
Q Consensus 292 -----------------------------------------i~~-------i--------~~~----------------- 298 (678)
+.. + ...
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~ 550 (820)
T PRK07246 471 KALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSE 550 (820)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 000 0 000
Q ss_pred -------------------CCCCccEEEEEeccC--hhHHHHHH-HhcCCCeEEecCCCCCCCCCceeEEEEEe----ch
Q 005773 299 -------------------CPKRRQTMLFSATLT--EDVDELIK-LSLTKPLRLSADPSAKRPSTLTEEVVRIR----RM 352 (678)
Q Consensus 299 -------------------~~~~~q~il~SATl~--~~~~~l~~-~~~~~p~~~~~~~~~~~~~~l~~~~~~~~----~~ 352 (678)
++....+|++|||++ +... +.. ..+......... . +.. .+..+.+. ..
T Consensus 551 ~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~--~--~~~-~~~~~~i~~~~p~~ 624 (820)
T PRK07246 551 KRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE--K--DKK-QDQLVVVDQDMPLV 624 (820)
T ss_pred cceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC--C--ChH-HccEEEeCCCCCCC
Confidence 001135789999996 3322 221 122111111110 0 000 11111111 10
Q ss_pred h----hhh---HHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEE
Q 005773 353 R----EVN---QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLI 425 (678)
Q Consensus 353 ~----~~~---~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLv 425 (678)
. ... -...+..+. ..++++||+++|+...+.++..|......+ ...|... .+..+++.|+++...||+
T Consensus 625 ~~~~~~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLl 699 (820)
T PRK07246 625 TETSDEVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILL 699 (820)
T ss_pred CCCChHHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEE
Confidence 0 011 111122233 356899999999999999999887654444 3334222 256689999998889999
Q ss_pred EcccccccCCCCC--ccEEEEcCCCC----C--------------------------hhHHHHHHhhcccCCC-ceEEEE
Q 005773 426 ATDVAARGLDIIG--VQTVINYACPR----D--------------------------LTSYVHRVGRTARAGR-EGYAVT 472 (678)
Q Consensus 426 aT~~~~~GlDi~~--v~~VI~~d~p~----s--------------------------~~~yiQr~GRagR~g~-~G~~i~ 472 (678)
+|..+.+|+|+|+ ...||...+|. + ...+.|.+||.-|... .|.++
T Consensus 700 G~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~- 778 (820)
T PRK07246 700 GLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVL- 778 (820)
T ss_pred ecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEE-
Confidence 9999999999974 56677777663 1 1234589999999654 46544
Q ss_pred EeeCC--cHHHHHHHHHH
Q 005773 473 FVTDN--DRSLLKAIAKR 488 (678)
Q Consensus 473 l~~~~--d~~~l~~i~~~ 488 (678)
++++. ...+-+.+.+.
T Consensus 779 ilD~R~~~k~Yg~~~l~s 796 (820)
T PRK07246 779 ILDRRILTKSYGKQILAS 796 (820)
T ss_pred EECCcccccHHHHHHHHh
Confidence 44432 33344444443
No 139
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.77 E-value=1.1e-16 Score=165.64 Aligned_cols=326 Identities=15% Similarity=0.197 Sum_probs=211.9
Q ss_pred CCCcHHHHHHHHHHhc-CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 005773 146 SKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (678)
Q Consensus 146 ~~~~~iQ~~~i~~ll~-g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~ 224 (678)
..+-|+|.+.+..+++ |..++++..+|.|||+++ |.+ ...+.. . ...|||||.. +-.-|.+.+..|..-..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laI-A~yyra-E----wplliVcPAs-vrftWa~al~r~lps~~ 268 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAI-ARYYRA-E----WPLLIVCPAS-VRFTWAKALNRFLPSIH 268 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHH-HHHHhh-c----CcEEEEecHH-HhHHHHHHHHHhccccc
Confidence 3478999999988776 678999999999999874 333 233322 2 2379999975 44557777777654432
Q ss_pred ceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCcc
Q 005773 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304 (678)
Q Consensus 225 ~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q 304 (678)
. +.++.++.+.... +-....|.|.+++.|..+ .+ .+.-..+.+||+||+|.+-+.. ......++..+..-..
T Consensus 269 p-i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l-~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akh 340 (689)
T KOG1000|consen 269 P-IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLL-HD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKH 340 (689)
T ss_pred c-eEEEecccCCccc---cccCCeEEEEEHHHHHHH-HH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhh
Confidence 2 3444444332211 222356999999887543 32 2334468999999999876542 2334555555555567
Q ss_pred EEEEEeccC-------------------hhHHHHHHHhcCCC-eEEecCC--------------------------CCCC
Q 005773 305 TMLFSATLT-------------------EDVDELIKLSLTKP-LRLSADP--------------------------SAKR 338 (678)
Q Consensus 305 ~il~SATl~-------------------~~~~~l~~~~~~~p-~~~~~~~--------------------------~~~~ 338 (678)
+|++|+|+. ++..++...+|.-. +.+..+. ..+.
T Consensus 341 vILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qL 420 (689)
T KOG1000|consen 341 VILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQL 420 (689)
T ss_pred eEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 899999974 22333333344321 1111110 1112
Q ss_pred CCCceeEEEEEechhhh---------------------h--------------HHHHHHHH------hhccCCceEEEEe
Q 005773 339 PSTLTEEVVRIRRMREV---------------------N--------------QEAVLLSL------CSKTFTSKVIIFS 377 (678)
Q Consensus 339 ~~~l~~~~~~~~~~~~~---------------------~--------------~~~~l~~~------~~~~~~~~vLVF~ 377 (678)
|+. .+.++.+...... . +...+... +....+.+.+||+
T Consensus 421 PpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFa 499 (689)
T KOG1000|consen 421 PPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFA 499 (689)
T ss_pred Ccc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEe
Confidence 333 2222222110000 0 00001111 1233467899999
Q ss_pred ccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC-CccE-EEEcccccccCCCCCccEEEEcCCCCChhHHH
Q 005773 378 GTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ-HVDF-LIATDVAARGLDIIGVQTVINYACPRDLTSYV 455 (678)
Q Consensus 378 ~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g-~~~v-LvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yi 455 (678)
-.....+-+...+...++....|+|.++..+|..+.+.|... ++.| +++..+++.||++...+.||+..+||||--.+
T Consensus 500 HH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLl 579 (689)
T KOG1000|consen 500 HHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLL 579 (689)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEE
Confidence 999999999999999999999999999999999999999864 4554 67888999999999999999999999999999
Q ss_pred HHHhhcccCCCceEEE--EEeeCC--cHHHHHHHHHH
Q 005773 456 HRVGRTARAGREGYAV--TFVTDN--DRSLLKAIAKR 488 (678)
Q Consensus 456 Qr~GRagR~g~~G~~i--~l~~~~--d~~~l~~i~~~ 488 (678)
|.-.|++|.|++..+. .|+.++ |..++..+.++
T Consensus 580 QAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~K 616 (689)
T KOG1000|consen 580 QAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQK 616 (689)
T ss_pred echhhhhhccccceeeEEEEEecCchHHHHHHHHHHH
Confidence 9999999999875443 445554 34455555544
No 140
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.71 E-value=7e-17 Score=147.02 Aligned_cols=117 Identities=39% Similarity=0.603 Sum_probs=105.7
Q ss_pred HHHHHHHHhhcc--CCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccC
Q 005773 357 QEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (678)
Q Consensus 357 ~~~~l~~~~~~~--~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl 434 (678)
+...+..++... .++++||||++...++.+..+|...+..+..+||.++..+|..++..|.+|...||++|..+++|+
T Consensus 13 k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~ 92 (131)
T cd00079 13 KLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGI 92 (131)
T ss_pred HHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCc
Confidence 333444444433 378999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEE
Q 005773 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTF 473 (678)
Q Consensus 435 Di~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l 473 (678)
|+|++++||++++|++...|+|++||++|.|+.|.+++|
T Consensus 93 d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 93 DLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred ChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999988764
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=1.6e-14 Score=162.65 Aligned_cols=131 Identities=21% Similarity=0.247 Sum_probs=100.8
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
+|. .|+++|.-+--.+.. .-|+.+.||-|||+++.+|++-..+ .+..|-||+++.-||.+=++++..+..+
T Consensus 82 lG~-r~ydVQliGgl~Lh~--G~IAEM~TGEGKTL~atlpaylnAL------~GkgVhVVTvNdYLA~RDae~m~~vy~~ 152 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHE--GQIAEMKTGEGKTLVATLPSYLNAL------TGKGVHVVTVNDYLARRDAEWMGQVHRF 152 (939)
T ss_pred hCC-CcchhHHHhhhhhcC--CceeeecCCCChhHHHHHHHHHHhh------cCCCeEEEeCCHHHHHhHHHHHHHHHHH
Confidence 344 378888766655544 4689999999999999999875443 3445899999999999999999999999
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-----HHHHhcc-CccCCCCeeEEEEeCCcccc
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-----IDHLRNS-MSVDLDDLAVLILDEADRLL 284 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-----~~~l~~~-~~~~l~~i~~lVvDEah~ll 284 (678)
.|++|+++.++.+...... .-.+||+++|+..| .+.+... .......+.+.||||+|.++
T Consensus 153 LGLtvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 153 LGLSVGLIQQDMSPEERKK--NYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred hCCeEEEECCCCChHHHHH--hcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9999999988776655443 34689999999776 5555431 12345778899999999854
No 142
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.70 E-value=3.6e-17 Score=135.01 Aligned_cols=78 Identities=33% Similarity=0.599 Sum_probs=75.5
Q ss_pred HHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCC
Q 005773 388 ILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465 (678)
Q Consensus 388 ~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g 465 (678)
++|...++.+..+||++++.+|..+++.|++|...|||||+++++|+|+|.+++||+|++|+|+..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999976
No 143
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.69 E-value=4.2e-15 Score=153.83 Aligned_cols=112 Identities=20% Similarity=0.275 Sum_probs=99.5
Q ss_pred ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC-cc-EEEEcccccccCCCCCccEEEE
Q 005773 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH-VD-FLIATDVAARGLDIIGVQTVIN 444 (678)
Q Consensus 367 ~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~-~~-vLvaT~~~~~GlDi~~v~~VI~ 444 (678)
+...-+.|||.+...+.+.+...|+..|+++.-|.|+|++..|...++.|.+.- +. +|++-.+.+-.||+..+.+|++
T Consensus 635 rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFm 714 (791)
T KOG1002|consen 635 RDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFM 714 (791)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEe
Confidence 444568899999999999999999999999999999999999999999999764 33 5778888889999999999999
Q ss_pred cCCCCChhHHHHHHhhcccCCC--ceEEEEEeeCCc
Q 005773 445 YACPRDLTSYVHRVGRTARAGR--EGYAVTFVTDND 478 (678)
Q Consensus 445 ~d~p~s~~~yiQr~GRagR~g~--~G~~i~l~~~~d 478 (678)
+|+-|||.--.|...|.+|.|+ +-.++.|+-++.
T Consensus 715 mDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 715 MDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred ecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 9999999999999999999994 677888887665
No 144
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=5.3e-16 Score=162.58 Aligned_cols=346 Identities=13% Similarity=0.059 Sum_probs=234.2
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 005773 137 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (678)
Q Consensus 137 ~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 216 (678)
...+..+.......+|..+|..+.+|+++++.-.|.+||.++|.+..+..+...+. ...+++.|+.+++....+.+
T Consensus 276 ~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~----s~~~~~~~~~~~~~~~~~~~ 351 (1034)
T KOG4150|consen 276 RSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA----TNSLLPSEMVEHLRNGSKGQ 351 (1034)
T ss_pred HHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc----cceecchhHHHHhhccCCce
Confidence 33445556667888999999999999999999999999999999988877655433 34689999999876432211
Q ss_pred HHHh---hcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhcc-C--ccCCCCeeEEEEeCCcccccC-C--
Q 005773 217 EKIA---QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-M--SVDLDDLAVLILDEADRLLEL-G-- 287 (678)
Q Consensus 217 ~~l~---~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~-~--~~~l~~i~~lVvDEah~ll~~-g-- 287 (678)
.-.. +....-++-.+.+.+........+.+.+++++.|......+... . ...+-...++++||+|..+-. +
T Consensus 352 ~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~ 431 (1034)
T KOG4150|consen 352 VVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKAL 431 (1034)
T ss_pred EEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhH
Confidence 1000 00111234445666666666777788999999998876554322 1 112344568999999976532 1
Q ss_pred hHHHHHHHHHHC-----CCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhh---H--
Q 005773 288 FSAEIHELVRLC-----PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVN---Q-- 357 (678)
Q Consensus 288 f~~~i~~i~~~~-----~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~-- 357 (678)
-...+..+++.+ ..+.|++-.|||+...+.-....+--+-+.+.. ....|..-.+.+++.++..+.. +
T Consensus 432 ~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~--~DGSPs~~K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 432 AQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVT--IDGSPSSEKLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred HHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEE--ecCCCCccceEEEeCCCCCCcchhhhhh
Confidence 123334444433 246789999999987766554443323232222 3335556666666544322211 1
Q ss_pred -----HHHHHHHhhccCCceEEEEeccHHHHHHHHHH----HhhcC----CceeeccCCCCHHHHHHHHHHHhcCCccEE
Q 005773 358 -----EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKIL----FGLAA----LKAAELHGNLTQAQRLEALELFRKQHVDFL 424 (678)
Q Consensus 358 -----~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~----L~~~~----~~~~~lhg~l~~~~R~~~l~~F~~g~~~vL 424 (678)
..++..+. ..+-++|-||+++..|+.+-.. |...+ -.+..+.|+...++|.++....-.|+..-+
T Consensus 510 ~i~E~s~~~~~~i--~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~gi 587 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMV--QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGI 587 (1034)
T ss_pred HHHHHHHHHHHHH--HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEE
Confidence 11222222 2356899999999999876443 32222 134567899999999999999999999999
Q ss_pred EEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEee--CCcHHHHHHHHHHhc
Q 005773 425 IATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT--DNDRSLLKAIAKRAG 490 (678)
Q Consensus 425 vaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~--~~d~~~l~~i~~~~~ 490 (678)
|+|++++.||||.+.+.|++.+.|.|...+.|..|||||.+++..++.++. +-|..++..-....+
T Consensus 588 IaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~ 655 (1034)
T KOG4150|consen 588 IATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFG 655 (1034)
T ss_pred EecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhC
Confidence 999999999999999999999999999999999999999988877666554 556666655444433
No 145
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.68 E-value=4.6e-16 Score=163.53 Aligned_cols=279 Identities=23% Similarity=0.265 Sum_probs=177.7
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHH
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (678)
+-++-+|||.||||.- +|+++..... .++--|.|.||..+++.++.. |+.|.+++|.........
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~~aks------GvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~- 256 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLKSAKS------GVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN- 256 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHhhhcc------ceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC-
Confidence 3456799999999965 4666644333 489999999999999988874 788888888644322211
Q ss_pred hcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHH-HHHHHHHHCCCCccEEEEEeccChhHHHHHH
Q 005773 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA-EIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (678)
Q Consensus 243 l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~-~i~~i~~~~~~~~q~il~SATl~~~~~~l~~ 321 (678)
...+..+-+|-++.. .-..+++.||||.+.|.+....- +-..++........+.+ .+.+..+.+
T Consensus 257 -~~~a~hvScTVEM~s---------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV~ 321 (700)
T KOG0953|consen 257 -GNPAQHVSCTVEMVS---------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLVR 321 (700)
T ss_pred -CCcccceEEEEEEee---------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHHH
Confidence 123567777866541 12357899999999988533221 22233333222211111 133444444
Q ss_pred HhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCc-eeec
Q 005773 322 LSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK-AAEL 400 (678)
Q Consensus 322 ~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~-~~~l 400 (678)
..+... ...+ .+..+.+..+..-...+..-++...++-+| .|-|++....+...+...+.. +++|
T Consensus 322 ~i~k~T-----------Gd~v--ev~~YeRl~pL~v~~~~~~sl~nlk~GDCv-V~FSkk~I~~~k~kIE~~g~~k~aVI 387 (700)
T KOG0953|consen 322 KILKMT-----------GDDV--EVREYERLSPLVVEETALGSLSNLKPGDCV-VAFSKKDIFTVKKKIEKAGNHKCAVI 387 (700)
T ss_pred HHHhhc-----------CCee--EEEeecccCcceehhhhhhhhccCCCCCeE-EEeehhhHHHHHHHHHHhcCcceEEE
Confidence 333211 0000 011111111111111222222333333333 344778888888888877665 9999
Q ss_pred cCCCCHHHHHHHHHHHhc--CCccEEEEcccccccCCCCCccEEEEcCCCC---------ChhHHHHHHhhcccCCC---
Q 005773 401 HGNLTQAQRLEALELFRK--QHVDFLIATDVAARGLDIIGVQTVINYACPR---------DLTSYVHRVGRTARAGR--- 466 (678)
Q Consensus 401 hg~l~~~~R~~~l~~F~~--g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~---------s~~~yiQr~GRagR~g~--- 466 (678)
+|+++++.|...-..|++ +..+||||||++++|||+ +|+.||+|.+-. +..+..|.+|||||.|.
T Consensus 388 YGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 388 YGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred ecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 999999999999999997 899999999999999999 899999988753 56788899999999873
Q ss_pred ceEEEEEeeCCcHHHHHHHHH
Q 005773 467 EGYAVTFVTDNDRSLLKAIAK 487 (678)
Q Consensus 467 ~G~~i~l~~~~d~~~l~~i~~ 487 (678)
.|.+.+|..+ |...++++.+
T Consensus 467 ~G~vTtl~~e-DL~~L~~~l~ 486 (700)
T KOG0953|consen 467 QGEVTTLHSE-DLKLLKRILK 486 (700)
T ss_pred CceEEEeeHh-hHHHHHHHHh
Confidence 4777776554 5555555544
No 146
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.66 E-value=2.4e-14 Score=170.21 Aligned_cols=121 Identities=13% Similarity=0.141 Sum_probs=84.8
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhhcCC--ceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCC--ccEEE
Q 005773 368 TFTSKVIIFSGTKQAAHRLKILFGLAAL--KAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG--VQTVI 443 (678)
Q Consensus 368 ~~~~~vLVF~~s~~~~~~l~~~L~~~~~--~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~--v~~VI 443 (678)
..++++|||++|+...+.++..|..... .+..+--+++...|..+++.|+.+.-.||++|..+.+|+|+|+ +++||
T Consensus 750 ~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~vi 829 (928)
T PRK08074 750 ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLV 829 (928)
T ss_pred hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEE
Confidence 3467999999999999999999875422 1223333444456788999999988889999999999999998 58899
Q ss_pred EcCCCC-Ch-----------------------------hHHHHHHhhcccCCCceEEEEEeeCC--cHHHHHHHHHH
Q 005773 444 NYACPR-DL-----------------------------TSYVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIAKR 488 (678)
Q Consensus 444 ~~d~p~-s~-----------------------------~~yiQr~GRagR~g~~G~~i~l~~~~--d~~~l~~i~~~ 488 (678)
...+|. +| ..+.|.+||.-|....--++++++.. ...+-+.+.+.
T Consensus 830 I~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~s 906 (928)
T PRK08074 830 IVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLES 906 (928)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHh
Confidence 888775 11 12358899999966443344444443 33444444443
No 147
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.65 E-value=2.8e-15 Score=137.44 Aligned_cols=144 Identities=45% Similarity=0.585 Sum_probs=110.5
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHH
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (678)
+++++.++||+|||.+++..+...+.. ....+++|++|++.++.|+.+.+..+... +..+..+.+..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKL 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHH
Confidence 468999999999999876666655433 12457999999999999999988887665 6777888887766666555
Q ss_pred hcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEecc
Q 005773 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (678)
Q Consensus 243 l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl 312 (678)
.....+|+|+|++.+...+... ......+.++||||+|.+....+...............+++++|||+
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~-~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERL-KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcC-CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 6678899999999998877654 23456788999999999887554443333444556778899999996
No 148
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.65 E-value=1.1e-13 Score=154.91 Aligned_cols=80 Identities=15% Similarity=0.137 Sum_probs=61.7
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc----CCccEEEEcccccccCCC-------
Q 005773 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK----QHVDFLIATDVAARGLDI------- 436 (678)
Q Consensus 368 ~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~----g~~~vLvaT~~~~~GlDi------- 436 (678)
..++++||.+.|+..+..++..|...--....+.|..+ .+..++++|+. |...||++|+.+.+|+|+
T Consensus 468 ~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 468 KAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred HcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 34679999999999999999998653223344555432 45667888887 478899999999999999
Q ss_pred -CC--ccEEEEcCCCC
Q 005773 437 -IG--VQTVINYACPR 449 (678)
Q Consensus 437 -~~--v~~VI~~d~p~ 449 (678)
|| +++||+.-+|.
T Consensus 546 ~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 546 DKDNLLTDLIITCAPF 561 (636)
T ss_pred CCCCcccEEEEEeCCC
Confidence 34 88999988874
No 149
>COG4889 Predicted helicase [General function prediction only]
Probab=99.59 E-value=3.7e-15 Score=162.96 Aligned_cols=318 Identities=21% Similarity=0.225 Sum_probs=180.5
Q ss_pred CCCCCcHHHHHHHHHHhcC----CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 144 GYSKPTPIQAACIPLALTG----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 144 g~~~~~~iQ~~~i~~ll~g----~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
.-.+|+|+|+.||..++.| -..=+.+.+|+|||.+ .|-+.+++-. .++|+|+|+.+|..|..+....-
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfT-sLkisEala~-------~~iL~LvPSIsLLsQTlrew~~~ 229 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFT-SLKISEALAA-------ARILFLVPSISLLSQTLREWTAQ 229 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccch-HHHHHHHHhh-------hheEeecchHHHHHHHHHHHhhc
Confidence 4557999999999999886 1233556689999998 6777777633 57999999999998865554432
Q ss_pred hhcCCceeEEEecCCChHH-----------------------HHHH--hcCCCCEEEECchHHHHHHhccCccCCCCeeE
Q 005773 220 AQFTDIRCCLVVGGLSTKM-----------------------QETA--LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 274 (678)
Q Consensus 220 ~~~~~~~v~~~~g~~~~~~-----------------------~~~~--l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~ 274 (678)
. ...++...+++...... .+.. -..+--||++|+..|...-.. ...-+..+++
T Consensus 230 ~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~G~~~fDl 307 (1518)
T COG4889 230 K-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEAGLDEFDL 307 (1518)
T ss_pred c-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHcCCCCccE
Confidence 1 12344444443321110 0011 112345999999988664432 2455788999
Q ss_pred EEEeCCcccccCChH-HHHHHHH----HHCCCCccEEEEEeccChh---HHHHHHHhcCCCeEEecCCCC------C---
Q 005773 275 LILDEADRLLELGFS-AEIHELV----RLCPKRRQTMLFSATLTED---VDELIKLSLTKPLRLSADPSA------K--- 337 (678)
Q Consensus 275 lVvDEah~ll~~gf~-~~i~~i~----~~~~~~~q~il~SATl~~~---~~~l~~~~~~~p~~~~~~~~~------~--- 337 (678)
||.||||+....... ..-..+. ...-+..+.+.|+||+.-. ....+... .....+.+... .
T Consensus 308 iicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~--s~~l~SMDDe~~fGeef~rl~ 385 (1518)
T COG4889 308 IICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDH--SAELSSMDDELTFGEEFHRLG 385 (1518)
T ss_pred EEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhc--cceeeccchhhhhchhhhccc
Confidence 999999995421100 0000000 0000123457888887411 11111100 00000000000 0
Q ss_pred -----CCCCceeE---EEEEec-------------hhhhhHHHHH-------HHHhh--------------ccCCceEEE
Q 005773 338 -----RPSTLTEE---VVRIRR-------------MREVNQEAVL-------LSLCS--------------KTFTSKVII 375 (678)
Q Consensus 338 -----~~~~l~~~---~~~~~~-------------~~~~~~~~~l-------~~~~~--------------~~~~~~vLV 375 (678)
....++.. +..+.. ........-. .-+.+ ..+..+.|-
T Consensus 386 FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIa 465 (1518)
T COG4889 386 FGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIA 465 (1518)
T ss_pred HHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHH
Confidence 00001111 111100 0000000000 00001 011246788
Q ss_pred EeccHHHHHHHHHHHhh---------------cCCceeeccCCCCHHHHHHHHHH---HhcCCccEEEEcccccccCCCC
Q 005773 376 FSGTKQAAHRLKILFGL---------------AALKAAELHGNLTQAQRLEALEL---FRKQHVDFLIATDVAARGLDII 437 (678)
Q Consensus 376 F~~s~~~~~~l~~~L~~---------------~~~~~~~lhg~l~~~~R~~~l~~---F~~g~~~vLvaT~~~~~GlDi~ 437 (678)
||.+.+....++..|.. ..+++....|.|...+|...+.. |....++||--...+++|+|+|
T Consensus 466 F~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVP 545 (1518)
T COG4889 466 FAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVP 545 (1518)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCcc
Confidence 99988887777665531 23455667799999999665543 4456788888888999999999
Q ss_pred CccEEEEcCCCCChhHHHHHHhhccc-C-C-CceEEEEE
Q 005773 438 GVQTVINYACPRDLTSYVHRVGRTAR-A-G-REGYAVTF 473 (678)
Q Consensus 438 ~v~~VI~~d~p~s~~~yiQr~GRagR-~-g-~~G~~i~l 473 (678)
..+.||+|++-.+....+|.+||..| + | .-|+.|+=
T Consensus 546 aLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILP 584 (1518)
T COG4889 546 ALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILP 584 (1518)
T ss_pred ccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEE
Confidence 99999999999999999999999999 2 3 23555543
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=1e-12 Score=149.74 Aligned_cols=111 Identities=21% Similarity=0.231 Sum_probs=92.7
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC-ccEEEEcccccccCCCC--------C
Q 005773 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH-VDFLIATDVAARGLDII--------G 438 (678)
Q Consensus 368 ~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~-~~vLvaT~~~~~GlDi~--------~ 438 (678)
..+.||||-+.|....+.|+.+|...|+..-.|++.....+-.-+-+ .|+ -.|-|||+.|+||.||. |
T Consensus 626 ~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNMAGRGTDIkLg~~V~e~G 702 (1112)
T PRK12901 626 EAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNMAGRGTDIKLSPEVKAAG 702 (1112)
T ss_pred HCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccCcCCCcCcccchhhHHcC
Confidence 45789999999999999999999999999888888755444332222 343 34899999999999996 3
Q ss_pred ccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHH
Q 005773 439 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (678)
Q Consensus 439 v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~ 481 (678)
==+||-...|.|..-..|-.||+||.|.+|.+..|++-.|.-+
T Consensus 703 GL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdLm 745 (1112)
T PRK12901 703 GLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLM 745 (1112)
T ss_pred CCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHHH
Confidence 4589999999999999999999999999999999999877544
No 151
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.57 E-value=6.7e-14 Score=150.79 Aligned_cols=111 Identities=15% Similarity=0.197 Sum_probs=93.4
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc--CCccE-EEEcccccccCCCCCccEEEE
Q 005773 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK--QHVDF-LIATDVAARGLDIIGVQTVIN 444 (678)
Q Consensus 368 ~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~--g~~~v-LvaT~~~~~GlDi~~v~~VI~ 444 (678)
....+++|...-......++..+...|..+..+||.....+|..+++.|+. |..+| ||+-.+.+-|||+.+.+|+|.
T Consensus 744 ~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlil 823 (901)
T KOG4439|consen 744 SSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLIL 823 (901)
T ss_pred cccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEE
Confidence 345678888887887888889999999999999999999999999999984 54555 566677789999999999999
Q ss_pred cCCCCChhHHHHHHhhcccCCCceEEEE--EeeCCc
Q 005773 445 YACPRDLTSYVHRVGRTARAGREGYAVT--FVTDND 478 (678)
Q Consensus 445 ~d~p~s~~~yiQr~GRagR~g~~G~~i~--l~~~~d 478 (678)
.|+.|||.-=.|.+.|..|.|++..+++ |+..+.
T Consensus 824 vDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gT 859 (901)
T KOG4439|consen 824 VDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGT 859 (901)
T ss_pred EecccCHHHHHHHHHHHHHhcccCceEEEEEEecCc
Confidence 9999999999999999999997765554 444443
No 152
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.57 E-value=2.1e-13 Score=163.94 Aligned_cols=107 Identities=22% Similarity=0.332 Sum_probs=97.3
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcC--CccEEEEcccccccCCCCCccEEEEcCCCC
Q 005773 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQ--HVDFLIATDVAARGLDIIGVQTVINYACPR 449 (678)
Q Consensus 372 ~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g--~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~ 449 (678)
++|||++.......+..+|...++.+..++|.++...|..++..|+++ ..-+|++|.+++.|||+.+.++||+||+.|
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 899999999999999999999999999999999999999999999986 455788889999999999999999999999
Q ss_pred ChhHHHHHHhhcccCCCce--EEEEEeeCCc
Q 005773 450 DLTSYVHRVGRTARAGREG--YAVTFVTDND 478 (678)
Q Consensus 450 s~~~yiQr~GRagR~g~~G--~~i~l~~~~d 478 (678)
|+....|...|++|.|+.. .++.+++.+.
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 9999999999999999764 4555566655
No 153
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.56 E-value=8.7e-14 Score=153.31 Aligned_cols=111 Identities=19% Similarity=0.275 Sum_probs=95.0
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhh----------------------cCCceeeccCCCCHHHHHHHHHHHhcCC----c
Q 005773 368 TFTSKVIIFSGTKQAAHRLKILFGL----------------------AALKAAELHGNLTQAQRLEALELFRKQH----V 421 (678)
Q Consensus 368 ~~~~~vLVF~~s~~~~~~l~~~L~~----------------------~~~~~~~lhg~l~~~~R~~~l~~F~~g~----~ 421 (678)
..+.++|||.+|......+..+|.. .|..+..|.|.....+|......|++-. .
T Consensus 1140 eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaR 1219 (1567)
T KOG1015|consen 1140 EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRAR 1219 (1567)
T ss_pred HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeE
Confidence 3578999999999999999988853 2567889999999999999999999642 3
Q ss_pred cEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEE--EeeCCc
Q 005773 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVT--FVTDND 478 (678)
Q Consensus 422 ~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~--l~~~~d 478 (678)
.+||+|.+.+.|||+-.++.||+||..|||.-.+|.+=|+.|.|+...||+ |+..+.
T Consensus 1220 l~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGT 1278 (1567)
T KOG1015|consen 1220 LFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGT 1278 (1567)
T ss_pred EEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhccc
Confidence 489999999999999999999999999999999999999999997655554 455443
No 154
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.56 E-value=1.6e-14 Score=139.63 Aligned_cols=153 Identities=20% Similarity=0.163 Sum_probs=100.9
Q ss_pred CCcHHHHHHHHHHhc-------CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 147 KPTPIQAACIPLALT-------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~-------g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
.|+++|.+++..+.. ++.+++.+|||||||.+++..+. .+.. ++||++|+..|+.|+.+.+..+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~-~l~~--------~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALIL-ELAR--------KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHH-HHHC--------EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhh-cccc--------ceeEecCHHHHHHHHHHHHHHh
Confidence 489999999999884 58999999999999998654344 4332 7999999999999999998665
Q ss_pred hhcCCcee-----------EEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccC----------ccCCCCeeEEEEe
Q 005773 220 AQFTDIRC-----------CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM----------SVDLDDLAVLILD 278 (678)
Q Consensus 220 ~~~~~~~v-----------~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~----------~~~l~~i~~lVvD 278 (678)
........ ....................+|+++|...|........ ......+.+||+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 74 GSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp STTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 43211100 00111111122223334567899999999987765321 1234567899999
Q ss_pred CCcccccCChHHHHHHHHHHCCCCccEEEEEeccC
Q 005773 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (678)
Q Consensus 279 Eah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~ 313 (678)
|||++....- +..++. .....+|+||||+.
T Consensus 154 EaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp TGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred hhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 9999764321 344444 45677999999985
No 155
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.54 E-value=1.4e-12 Score=151.27 Aligned_cols=104 Identities=19% Similarity=0.213 Sum_probs=78.0
Q ss_pred ccCCceEEEEeccHHHHHHHHHHHhhcCCc-eeeccCCCCHHHHHHHHHHHhcCCc-cEEEEcccccccCCCCC--ccEE
Q 005773 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALK-AAELHGNLTQAQRLEALELFRKQHV-DFLIATDVAARGLDIIG--VQTV 442 (678)
Q Consensus 367 ~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~l~~~~R~~~l~~F~~g~~-~vLvaT~~~~~GlDi~~--v~~V 442 (678)
...++++|||++|+..+..+...+...... ....+|..+. ..+++.|..+.- .++|+|..+.+|+|+++ .+.|
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~---~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~v 552 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDER---EELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLV 552 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcH---HHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEE
Confidence 334569999999999999999999876652 4445554444 378888887655 89999999999999988 5789
Q ss_pred EEcCCCCC------------------------------hhHHHHHHhhcccCCCc-eEEEEE
Q 005773 443 INYACPRD------------------------------LTSYVHRVGRTARAGRE-GYAVTF 473 (678)
Q Consensus 443 I~~d~p~s------------------------------~~~yiQr~GRagR~g~~-G~~i~l 473 (678)
|+..+|.- .....|.+||+-|.-.. |.++++
T Consensus 553 vI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 553 VIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 98888862 23446999999995443 544444
No 156
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.54 E-value=2.2e-14 Score=118.94 Aligned_cols=81 Identities=47% Similarity=0.724 Sum_probs=77.1
Q ss_pred HHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccC
Q 005773 385 RLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA 464 (678)
Q Consensus 385 ~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~ 464 (678)
.+..+|...++.+..+||.++..+|..++..|++|...|||+|+++++|+|+|.+++||++++|+++..|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 005773 465 G 465 (678)
Q Consensus 465 g 465 (678)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 157
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.53 E-value=3.1e-13 Score=153.37 Aligned_cols=315 Identities=17% Similarity=0.241 Sum_probs=210.1
Q ss_pred CCCCcHHHHHHHHHHhcC-CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHH-HHHHHHhhc
Q 005773 145 YSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH-SMIEKIAQF 222 (678)
Q Consensus 145 ~~~~~~iQ~~~i~~ll~g-~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~-~~~~~l~~~ 222 (678)
|....|+|.++++.+.+. .++++++|+|||||.+.-++++. ..+..+++++.|.-+.+..++ .+-+++...
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 344589999999988775 47889999999999987777765 235678999999999988554 455667667
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccC-C-----hHHHHHHHH
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-G-----FSAEIHELV 296 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~-g-----f~~~i~~i~ 296 (678)
.|..+..+.|..+.... +....+|+|+||++.-.. + ....+++.|+||+|.+... | ... +..+-
T Consensus 1214 ~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia 1283 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIA 1283 (1674)
T ss_pred cCceEEecCCccccchH---HhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHH
Confidence 78888888887665433 445569999999997543 2 3567889999999987732 1 012 34454
Q ss_pred HHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhH-----HHHHHHHhh-ccCC
Q 005773 297 RLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ-----EAVLLSLCS-KTFT 370 (678)
Q Consensus 297 ~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~l~~~~~-~~~~ 370 (678)
..+-+..+++.+|..+++. ..+ ..+...-.+.+. ...++..+.-.+..+....-... ...+..+.. ...+
T Consensus 1284 ~q~~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~-p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~ 1359 (1674)
T KOG0951|consen 1284 SQLEKKIRVVALSSSLANA-RDL--IGASSSGVFNFS-PSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNR 1359 (1674)
T ss_pred HHHHhheeEEEeehhhccc-hhh--ccccccceeecC-cccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCC
Confidence 5555677889999887653 222 222222222332 23344444433333322111111 111222222 2346
Q ss_pred ceEEEEeccHHHHHHHHHHHhh----------------------cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcc
Q 005773 371 SKVIIFSGTKQAAHRLKILFGL----------------------AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD 428 (678)
Q Consensus 371 ~~vLVF~~s~~~~~~l~~~L~~----------------------~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~ 428 (678)
.+.+||+++++.+..++.-|-. ..++.++-|.+|+..+..-+...|..|.+.|+|...
T Consensus 1360 k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~ 1439 (1674)
T KOG0951|consen 1360 KPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSR 1439 (1674)
T ss_pred CCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEc
Confidence 7899999999999877543310 123333339999999999999999999999988877
Q ss_pred cccccCCCCCccEEEE-----cC------CCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHH
Q 005773 429 VAARGLDIIGVQTVIN-----YA------CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485 (678)
Q Consensus 429 ~~~~GlDi~~v~~VI~-----~d------~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i 485 (678)
- ..|+-.. .+.||- || .+.+....+|++|+|+| .|.|+++.......+++..
T Consensus 1440 ~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1440 D-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred c-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 6 7777653 333442 32 34468899999999998 5689999998887777654
No 158
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.51 E-value=1.5e-11 Score=142.10 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=59.9
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHh----cCCccEEEEcccccccCCCCC--ccEE
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR----KQHVDFLIATDVAARGLDIIG--VQTV 442 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~----~g~~~vLvaT~~~~~GlDi~~--v~~V 442 (678)
.++++|||++|+...+.++..|....-.-...+|. ..+..+++.|+ .|...||++|..+.+|||+|| +++|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 45669999999999999999886432122344554 24667776666 467789999999999999998 7899
Q ss_pred EEcCCCC
Q 005773 443 INYACPR 449 (678)
Q Consensus 443 I~~d~p~ 449 (678)
|+..+|.
T Consensus 610 II~kLPF 616 (697)
T PRK11747 610 IITKIPF 616 (697)
T ss_pred EEEcCCC
Confidence 9988774
No 159
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=3.5e-12 Score=148.41 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=59.7
Q ss_pred cCCCCCcHHHHHHHHHHh----cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 005773 143 LGYSKPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll----~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 218 (678)
+.|..++|.|.+.+..+. .|+++++.+|||+|||++.+.|+|......+ ..+++++.+.|..-..|+.+.+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~---~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP---EVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc---ccccEEEEcccchHHHHHHHHHHh
Confidence 457777999988776654 5789999999999999998899988765433 235789999998888888888887
Q ss_pred H
Q 005773 219 I 219 (678)
Q Consensus 219 l 219 (678)
+
T Consensus 83 ~ 83 (705)
T TIGR00604 83 L 83 (705)
T ss_pred h
Confidence 5
No 160
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.45 E-value=8.8e-12 Score=141.58 Aligned_cols=138 Identities=16% Similarity=0.188 Sum_probs=93.3
Q ss_pred EcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHH---H-Hh
Q 005773 168 SAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE---T-AL 243 (678)
Q Consensus 168 ~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~---~-~l 243 (678)
.+.+|||||.+|+-. +...+.. +..+|||+|...|+.|+.+.+.... .+..+..++++.+..... . ..
T Consensus 166 ~~~~GSGKTevyl~~-i~~~l~~-----Gk~vLvLvPEi~lt~q~~~rl~~~f--~~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 166 QALPGEDWARRLAAA-AAATLRA-----GRGALVVVPDQRDVDRLEAALRALL--GAGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred hcCCCCcHHHHHHHH-HHHHHHc-----CCeEEEEecchhhHHHHHHHHHHHc--CCCcEEEECCCCCHHHHHHHHHHHh
Confidence 334699999997544 4444433 4469999999999999999998753 235678889888766543 2 33
Q ss_pred cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc--cC-C--hHHHHHHHHHHCCCCccEEEEEeccChhHHH
Q 005773 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL--EL-G--FSAEIHELVRLCPKRRQTMLFSATLTEDVDE 318 (678)
Q Consensus 244 ~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll--~~-g--f~~~i~~i~~~~~~~~q~il~SATl~~~~~~ 318 (678)
.+...|||+|-.-+ ...+.++.+|||||=|.-. +. + |...-..+++....+..+|+-|||++-+...
T Consensus 238 ~G~~~IViGtRSAv--------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~ 309 (665)
T PRK14873 238 RGQARVVVGTRSAV--------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQA 309 (665)
T ss_pred CCCCcEEEEcceeE--------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHH
Confidence 45589999994332 3457889999999999644 11 1 2222223334444577899999999876655
Q ss_pred HHH
Q 005773 319 LIK 321 (678)
Q Consensus 319 l~~ 321 (678)
+..
T Consensus 310 ~~~ 312 (665)
T PRK14873 310 LVE 312 (665)
T ss_pred HHh
Confidence 443
No 161
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.45 E-value=6.4e-12 Score=144.02 Aligned_cols=311 Identities=20% Similarity=0.182 Sum_probs=179.7
Q ss_pred CcHHHHHHHHHHhc--------CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 148 PTPIQAACIPLALT--------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 148 ~~~iQ~~~i~~ll~--------g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
-+.+|-.|...+.. |--++-.|.||+|||++ -.-|+..|... ..+.|..|..-.|+|..|.-..+++-
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~---~~g~RfsiALGLRTLTLQTGda~r~r 484 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDD---KQGARFAIALGLRSLTLQTGHALKTR 484 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCC---CCCceEEEEccccceeccchHHHHHh
Confidence 46799999888765 22466799999999987 55666555332 24568899999999999988888776
Q ss_pred hhcCCceeEEEecCCChHHHHH-------------------------------------------Hhc--------CCCC
Q 005773 220 AQFTDIRCCLVVGGLSTKMQET-------------------------------------------ALR--------SMPD 248 (678)
Q Consensus 220 ~~~~~~~v~~~~g~~~~~~~~~-------------------------------------------~l~--------~~~d 248 (678)
.....-...+++|+.....-.. .+. -...
T Consensus 485 L~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ap 564 (1110)
T TIGR02562 485 LNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAP 564 (1110)
T ss_pred cCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCC
Confidence 5554445555555532211110 000 0157
Q ss_pred EEEECchHHHHHHhcc--CccCCC----CeeEEEEeCCcccccCChHHHHHHHHHHC-CCCccEEEEEeccChhHHHHHH
Q 005773 249 IVVATPGRMIDHLRNS--MSVDLD----DLAVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIK 321 (678)
Q Consensus 249 Iiv~Tp~~L~~~l~~~--~~~~l~----~i~~lVvDEah~ll~~gf~~~i~~i~~~~-~~~~q~il~SATl~~~~~~l~~ 321 (678)
|+|+|+..++...... ....+. .-+.|||||+|..-..-+ ..+..++..+ .-...+|++|||+|+.+...+.
T Consensus 565 v~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 565 VLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred eEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 9999999998776321 111111 125899999998543221 2233333321 1356799999999988655422
Q ss_pred -----------HhcCC---CeEEe---cCCCCCC----------------------------CCCceeEEEEEechhhh-
Q 005773 322 -----------LSLTK---PLRLS---ADPSAKR----------------------------PSTLTEEVVRIRRMREV- 355 (678)
Q Consensus 322 -----------~~~~~---p~~~~---~~~~~~~----------------------------~~~l~~~~~~~~~~~~~- 355 (678)
..... |+.+. ++..... +..-.-.++.+......
T Consensus 644 ~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~ 723 (1110)
T TIGR02562 644 RAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPREN 723 (1110)
T ss_pred HHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccch
Confidence 12221 21111 1110000 00000011111111000
Q ss_pred --h----HHHH---HHHHhh----cc--CCce---EEEEeccHHHHHHHHHHHhhc------CCceeeccCCCCHHHHHH
Q 005773 356 --N----QEAV---LLSLCS----KT--FTSK---VIIFSGTKQAAHRLKILFGLA------ALKAAELHGNLTQAQRLE 411 (678)
Q Consensus 356 --~----~~~~---l~~~~~----~~--~~~~---vLVF~~s~~~~~~l~~~L~~~------~~~~~~lhg~l~~~~R~~ 411 (678)
. ...+ ...++. .. .+.+ .||-+.+...+..++..|-.. .+.+..||+......|..
T Consensus 724 ~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~ 803 (1110)
T TIGR02562 724 ESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSY 803 (1110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHH
Confidence 0 0011 111111 11 1222 366667777777776665432 356888999998888877
Q ss_pred HHHHH----------------------hc----CCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCC
Q 005773 412 ALELF----------------------RK----QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG 465 (678)
Q Consensus 412 ~l~~F----------------------~~----g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g 465 (678)
+.+.. .+ +...|+|+|.+++-|+|+ +.+++|- -|.+..+.+||+||..|.|
T Consensus 804 ~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 804 IERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred HHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcccccc
Confidence 66553 11 356799999999999998 5666653 3567999999999999966
Q ss_pred C
Q 005773 466 R 466 (678)
Q Consensus 466 ~ 466 (678)
.
T Consensus 881 ~ 881 (1110)
T TIGR02562 881 L 881 (1110)
T ss_pred c
Confidence 3
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.36 E-value=3.9e-11 Score=134.47 Aligned_cols=288 Identities=18% Similarity=0.222 Sum_probs=175.6
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l 243 (678)
-.++.+|+|||||.+ ++..|...+.. +..++|+|..+++|+.++...++... ..++....-.++. .+
T Consensus 51 V~vVRSpMGTGKTta-Li~wLk~~l~~----~~~~VLvVShRrSL~~sL~~rf~~~~-l~gFv~Y~d~~~~-------~i 117 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTA-LIRWLKDALKN----PDKSVLVVSHRRSLTKSLAERFKKAG-LSGFVNYLDSDDY-------II 117 (824)
T ss_pred eEEEECCCCCCcHHH-HHHHHHHhccC----CCCeEEEEEhHHHHHHHHHHHHhhcC-CCcceeeeccccc-------cc
Confidence 356999999999987 45555554332 34579999999999999888887521 1122211111111 01
Q ss_pred c-CCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHH-------HHHHHHCCCCccEEEEEeccChh
Q 005773 244 R-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI-------HELVRLCPKRRQTMLFSATLTED 315 (678)
Q Consensus 244 ~-~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i-------~~i~~~~~~~~q~il~SATl~~~ 315 (678)
. ...+-+++..+.|.... ...+.++++|||||+-.++..-|...+ ..+...+.....+|++-||+...
T Consensus 118 ~~~~~~rLivqIdSL~R~~----~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 118 DGRPYDRLIVQIDSLHRLD----GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred cccccCeEEEEehhhhhcc----cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 1 12466777777775432 224667999999999988765333222 22334445567899999999999
Q ss_pred HHHHHHHhcCC-CeEEecCCCCCCCCCceeEEEEEech---------------------------------hhhhHHHHH
Q 005773 316 VDELIKLSLTK-PLRLSADPSAKRPSTLTEEVVRIRRM---------------------------------REVNQEAVL 361 (678)
Q Consensus 316 ~~~l~~~~~~~-p~~~~~~~~~~~~~~l~~~~~~~~~~---------------------------------~~~~~~~~l 361 (678)
.-+++...... ++.+..+.-. .+.-.....+..+.. ........+
T Consensus 194 tvdFl~~~Rp~~~i~vI~n~y~-~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~ 272 (824)
T PF02399_consen 194 TVDFLASCRPDENIHVIVNTYA-SPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF 272 (824)
T ss_pred HHHHHHHhCCCCcEEEEEeeee-cCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH
Confidence 88888775433 3333222111 100000000000000 000011112
Q ss_pred HHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCC--
Q 005773 362 LSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG-- 438 (678)
Q Consensus 362 ~~~~~-~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~-- 438 (678)
..+.. -..+.+|-||++|...++.++.+......++..++|.-+..+. +.| ++++|+++|.++.-|+++..
T Consensus 273 ~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~~H 346 (824)
T PF02399_consen 273 SELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEEKH 346 (824)
T ss_pred HHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccchhh
Confidence 22222 2346788899999999999999999989999999887766632 222 57899999999999999855
Q ss_pred ccEEEEcCCCC----ChhHHHHHHhhcccCCCceEEEEEeeC
Q 005773 439 VQTVINYACPR----DLTSYVHRVGRTARAGREGYAVTFVTD 476 (678)
Q Consensus 439 v~~VI~~d~p~----s~~~yiQr~GRagR~g~~G~~i~l~~~ 476 (678)
.+-|+-|--|. +..+..|++||+=... ....+++++.
T Consensus 347 F~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 347 FDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred ceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 34455553332 4556889999965443 4556666554
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.28 E-value=1.4e-11 Score=128.94 Aligned_cols=156 Identities=21% Similarity=0.176 Sum_probs=96.0
Q ss_pred HHHHHHHHHh-------------cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 005773 151 IQAACIPLAL-------------TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (678)
Q Consensus 151 iQ~~~i~~ll-------------~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 217 (678)
+|..++.+++ ..+.++++..+|+|||++ .+.++..+...........+|||||. .+..||...+.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~-~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTIT-AIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHH-HHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhh-hhhhhhhhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 5777777763 346799999999999987 45555555544333223359999999 77789999999
Q ss_pred HHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHH-----HHHhccCccCCCCeeEEEEeCCcccccCChHHHH
Q 005773 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMI-----DHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292 (678)
Q Consensus 218 ~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~-----~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i 292 (678)
+++....+++..+.|...............+|+|+|+..+. ..... +.--.+.+|||||+|.+-+.. ...
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~~~~vIvDEaH~~k~~~--s~~ 153 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKED---LKQIKWDRVIVDEAHRLKNKD--SKR 153 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSEEEEEEETTGGGGTTTT--SHH
T ss_pred cccccccccccccccccccccccccccccceeeeccccccccccccccccc---cccccceeEEEeccccccccc--ccc
Confidence 98765466777666665122222223455789999999998 21111 112358999999999986433 233
Q ss_pred HHHHHHCCCCccEEEEEeccCh
Q 005773 293 HELVRLCPKRRQTMLFSATLTE 314 (678)
Q Consensus 293 ~~i~~~~~~~~q~il~SATl~~ 314 (678)
...+..+. ....+++|||+..
T Consensus 154 ~~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 154 YKALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHHCCC-ECEEEEE-SS-SS
T ss_pred cccccccc-cceEEeecccccc
Confidence 33444443 6678999999753
No 164
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.27 E-value=9.9e-11 Score=132.11 Aligned_cols=314 Identities=19% Similarity=0.194 Sum_probs=191.4
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCcee
Q 005773 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227 (678)
Q Consensus 148 ~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v 227 (678)
|..+|. +-.+.....-++-+.||-|||++..+|+.-..+ .+..|.+++..--||..-.+++..+..+.|++|
T Consensus 81 ~~dVQl--iG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL------~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsv 152 (822)
T COG0653 81 HFDVQL--LGGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL------AGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSV 152 (822)
T ss_pred hhhHHH--hhhhhhcCCceeeeecCCchHHHHHHHHHHHhc------CCCCcEEeeehHHhhhhCHHHHHHHHHHcCCce
Confidence 444554 444555566789999999999999999854332 344578999999999999999999999999999
Q ss_pred EEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccC-----ccCCCCeeEEEEeCCcccc----------cC---C-
Q 005773 228 CLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL----------EL---G- 287 (678)
Q Consensus 228 ~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~ll----------~~---g- 287 (678)
++...+.+......+.. +||.++|-..| .++|+.+. ......+.+.|+||+|.++ .+ +
T Consensus 153 G~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~ 230 (822)
T COG0653 153 GVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDS 230 (822)
T ss_pred eeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccC
Confidence 99999998777666544 79999997654 33333221 1224567899999999854 11 1
Q ss_pred --hHHHHHHHHHHCCCC--------ccEE---------------------------------------------------
Q 005773 288 --FSAEIHELVRLCPKR--------RQTM--------------------------------------------------- 306 (678)
Q Consensus 288 --f~~~i~~i~~~~~~~--------~q~i--------------------------------------------------- 306 (678)
+...+..+...+... .+.|
T Consensus 231 ~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd 310 (822)
T COG0653 231 SELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRD 310 (822)
T ss_pred chHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEec
Confidence 122233333222111 0111
Q ss_pred ----------------------------------------------------------EEEeccChhHHHHHHHhcCCCe
Q 005773 307 ----------------------------------------------------------LFSATLTEDVDELIKLSLTKPL 328 (678)
Q Consensus 307 ----------------------------------------------------------l~SATl~~~~~~l~~~~~~~p~ 328 (678)
.||+|...+..++...+....+
T Consensus 311 ~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv 390 (822)
T COG0653 311 GEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVV 390 (822)
T ss_pred CeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCcee
Confidence 1111111111111111111111
Q ss_pred EEecCCCCCCCCCceeEEEEEechhhhhHH-HHHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCH
Q 005773 329 RLSADPSAKRPSTLTEEVVRIRRMREVNQE-AVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQ 406 (678)
Q Consensus 329 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~l~~~~~-~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~ 406 (678)
.+.......+.. ..+ ..+ .....+. +++..++. ...+.|+||-+.+....+.+...|...++....|+..-..
T Consensus 391 ~iPTnrp~~R~D-~~D--~vy--~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~ 465 (822)
T COG0653 391 VIPTNRPIIRLD-EPD--LVY--KTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHA 465 (822)
T ss_pred eccCCCcccCCC-Ccc--ccc--cchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHH
Confidence 110000000000 000 000 0111222 23333332 4457899999999999999999999999998888877653
Q ss_pred HHHHHHHHHHhcCCc-cEEEEcccccccCCCCCcc-----------EEEEcCCCCChhHHHHHHhhcccCCCceEEEEEe
Q 005773 407 AQRLEALELFRKQHV-DFLIATDVAARGLDIIGVQ-----------TVINYACPRDLTSYVHRVGRTARAGREGYAVTFV 474 (678)
Q Consensus 407 ~~R~~~l~~F~~g~~-~vLvaT~~~~~GlDi~~v~-----------~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~ 474 (678)
.+-. +-.+ .|+. -|-|||+.|+||-||.--. +||-..-..|-.---|-.||+||.|-+|.+..|+
T Consensus 466 ~EA~--Iia~-AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~l 542 (822)
T COG0653 466 REAE--IIAQ-AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYL 542 (822)
T ss_pred HHHH--HHhh-cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhh
Confidence 3322 2222 3443 4889999999999994222 4666655556666669999999999999999888
Q ss_pred eCCcH
Q 005773 475 TDNDR 479 (678)
Q Consensus 475 ~~~d~ 479 (678)
+-.|.
T Consensus 543 SleD~ 547 (822)
T COG0653 543 SLEDD 547 (822)
T ss_pred hhHHH
Confidence 86654
No 165
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.15 E-value=3.6e-09 Score=115.32 Aligned_cols=119 Identities=21% Similarity=0.266 Sum_probs=99.4
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc------------------CCceeeccCCCCHHHHHHHHHHHhcCC---ccEEEEc
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLA------------------ALKAAELHGNLTQAQRLEALELFRKQH---VDFLIAT 427 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~------------------~~~~~~lhg~l~~~~R~~~l~~F~~g~---~~vLvaT 427 (678)
.+.++|||..+......+..+|... +.+...+.|..+..+|.+++.+|++.- .-+|++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 3578999999999999999998653 245567899999999999999998642 3589999
Q ss_pred ccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHH
Q 005773 428 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 487 (678)
Q Consensus 428 ~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~ 487 (678)
.....|||+-+.+.+|.||+-|++..-.|.+-|..|-|+...|+++---.|..+-+.|..
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIyd 857 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYD 857 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHH
Confidence 999999999999999999999999999999999999998877777655555555555544
No 166
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.14 E-value=3.7e-10 Score=101.45 Aligned_cols=135 Identities=21% Similarity=0.220 Sum_probs=80.1
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (678)
|+-.++-..+|+|||.-.+--++...+.+ +.++|||.|||.++..+++.++.. ++++. ......
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~-----~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~~----- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR-----RLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARMR----- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT-----T--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc-----cCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeeec-----
Confidence 44567889999999987444444444433 457999999999999887776532 22222 111111
Q ss_pred HhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCC--hHHHHHHHHHHCCCCccEEEEEeccChhH
Q 005773 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG--FSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (678)
Q Consensus 242 ~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g--f~~~i~~i~~~~~~~~q~il~SATl~~~~ 316 (678)
...++.-|-++|.+.+...+.+ ...+.+++++|+||||..-.+. +...+..+-.. ....+|++|||+|-..
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~--g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES--GEAKVIFMTATPPGSE 140 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT--TS-EEEEEESS-TT--
T ss_pred cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHHHHhhheeHHHhhhc--cCeeEEEEeCCCCCCC
Confidence 1234556889999998887776 3457899999999999754322 33333333222 3467999999998543
No 167
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.08 E-value=4.8e-10 Score=124.14 Aligned_cols=312 Identities=18% Similarity=0.211 Sum_probs=190.6
Q ss_pred HHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH-hhcCCceeEEEecC
Q 005773 155 CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI-AQFTDIRCCLVVGG 233 (678)
Q Consensus 155 ~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l-~~~~~~~v~~~~g~ 233 (678)
++..+..+.-+++.+.||.|||..+...+|+.++......- .-+.+..|+|..+.-+.+.+.+- +...+-.|+.-...
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~-~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf 464 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGAS-FNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRF 464 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccccc-ccceeccccccchHHHHHHHHHhhHHhhcccccccccc
Confidence 33344445667799999999999999999999988765432 23678889998887776655431 22222222221111
Q ss_pred CChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc-cCChHHHHHHHHHHCCCCccEEEEEecc
Q 005773 234 LSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATL 312 (678)
Q Consensus 234 ~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~i~~~~~~~~q~il~SATl 312 (678)
.+ ..-+..--|+++|-+.++..+.+. +..+.++|+||.|... +..|...+..=+.-..+...++++|||+
T Consensus 465 ~S-----a~prpyg~i~fctvgvllr~~e~g----lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatI 535 (1282)
T KOG0921|consen 465 DS-----ATPRPYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATI 535 (1282)
T ss_pred cc-----cccccccceeeeccchhhhhhhhc----ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhccc
Confidence 11 101112258999999999888764 5578899999999754 3334444433333344455566666666
Q ss_pred ChhHHHHH--------------------HHhcCCCeEEecCCCCCCCCC-ceeEE---E---------EEec--------
Q 005773 313 TEDVDELI--------------------KLSLTKPLRLSADPSAKRPST-LTEEV---V---------RIRR-------- 351 (678)
Q Consensus 313 ~~~~~~l~--------------------~~~~~~p~~~~~~~~~~~~~~-l~~~~---~---------~~~~-------- 351 (678)
..+..... ...+..+.............. ..+.. . ....
T Consensus 536 dTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~ 615 (1282)
T KOG0921|consen 536 DTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRT 615 (1282)
T ss_pred chhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhh
Confidence 54322111 111111111100000000000 00000 0 0000
Q ss_pred -----hhh----hhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc-------CCceeeccCCCCHHHHHHHHHH
Q 005773 352 -----MRE----VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA-------ALKAAELHGNLTQAQRLEALEL 415 (678)
Q Consensus 352 -----~~~----~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~-------~~~~~~lhg~l~~~~R~~~l~~ 415 (678)
... ......+..+......+-++||.+.-.....|..+|... ...+..+|+.+...+..++.+.
T Consensus 616 am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~ 695 (1282)
T KOG0921|consen 616 AMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEP 695 (1282)
T ss_pred hhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCc
Confidence 000 001122233344556788999999999888888877432 4578899999999999999999
Q ss_pred HhcCCccEEEEcccccccCCCCCccEEEEcCCCC------------------ChhHHHHHHhhcccCCCceEEEEEeeCC
Q 005773 416 FRKQHVDFLIATDVAARGLDIIGVQTVINYACPR------------------DLTSYVHRVGRTARAGREGYAVTFVTDN 477 (678)
Q Consensus 416 F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~------------------s~~~yiQr~GRagR~g~~G~~i~l~~~~ 477 (678)
-..|..+++++|+++...+.|.++.+||..+.-. +....+||.||+||. ++|.|..+++.-
T Consensus 696 ~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~a 774 (1282)
T KOG0921|consen 696 VPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRA 774 (1282)
T ss_pred ccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHH
Confidence 9999999999999999999998888887433221 455678999999994 689999887753
No 168
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.07 E-value=4.9e-08 Score=116.10 Aligned_cols=298 Identities=19% Similarity=0.188 Sum_probs=166.4
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHH
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (678)
+..+++--||||||++ ++.+.+.+... ...+.|+||+-++.|-.|+.+.+..+........ ...+...-...
T Consensus 274 ~~G~IWHtqGSGKTlT-m~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~ 345 (962)
T COG0610 274 KGGYIWHTQGSGKTLT-MFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKEL 345 (962)
T ss_pred CceEEEeecCCchHHH-HHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHH
Confidence 4699999999999987 55555555544 3467899999999999999999998765433221 33445555555
Q ss_pred hcCC-CCEEEECchHHHHHHhccCcc-CCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHH-
Q 005773 243 LRSM-PDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL- 319 (678)
Q Consensus 243 l~~~-~dIiv~Tp~~L~~~l~~~~~~-~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l- 319 (678)
+... ..|||||-..|-..+...... .-..-=+||+||||+ .+.|+... .+...+ ++...++||+||-..-...
T Consensus 346 l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHR-SQ~G~~~~--~~~~~~-~~a~~~gFTGTPi~~~d~~t 421 (962)
T COG0610 346 LEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHR-SQYGELAK--LLKKAL-KKAIFIGFTGTPIFKEDKDT 421 (962)
T ss_pred HhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhh-ccccHHHH--HHHHHh-ccceEEEeeCCccccccccc
Confidence 5544 479999999987776553111 122233789999998 44443322 222223 3477899999986332222
Q ss_pred HHHhcCCCeEEecCCCC-CCCCCceeEEEEEe----chhhhh----------------------H---------------
Q 005773 320 IKLSLTKPLRLSADPSA-KRPSTLTEEVVRIR----RMREVN----------------------Q--------------- 357 (678)
Q Consensus 320 ~~~~~~~p~~~~~~~~~-~~~~~l~~~~~~~~----~~~~~~----------------------~--------------- 357 (678)
....+...+........ .....+ ...+... ...... +
T Consensus 422 t~~~fg~ylh~Y~i~daI~Dg~vl-~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r 500 (962)
T COG0610 422 TKDVFGDYLHTYTITDAIRDGAVL-PVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVR 500 (962)
T ss_pred hhhhhcceeEEEecchhhccCcee-eEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHH
Confidence 11112222111111110 000011 0000000 000000 0
Q ss_pred -----HHHHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcC---------------------Cceeec--cCCCCHHH
Q 005773 358 -----EAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAA---------------------LKAAEL--HGNLTQAQ 408 (678)
Q Consensus 358 -----~~~l~~~~~-~~~~~~vLVF~~s~~~~~~l~~~L~~~~---------------------~~~~~l--hg~l~~~~ 408 (678)
..+...+.. ...+.++.+.+.++..+..+.+...... ...... |... ...
T Consensus 501 ~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~ 579 (962)
T COG0610 501 LIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDE 579 (962)
T ss_pred HHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HHH
Confidence 000011112 3345678888888875554444332110 000000 1122 122
Q ss_pred HHHHHHH--HhcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccC--C-Cc-eEEEEEee
Q 005773 409 RLEALEL--FRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA--G-RE-GYAVTFVT 475 (678)
Q Consensus 409 R~~~l~~--F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~--g-~~-G~~i~l~~ 475 (678)
+...... +.....++||.++.+-.|.|-|.+.++. .|-|.-....+|.+-||.|. + ++ |.++-|+.
T Consensus 580 ~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 580 KKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred HhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 2333334 3456789999999999999999887765 67778888999999999993 3 22 55555544
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.06 E-value=1.6e-09 Score=112.23 Aligned_cols=76 Identities=28% Similarity=0.291 Sum_probs=60.0
Q ss_pred cCCCCCcHHHHH----HHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 005773 143 LGYSKPTPIQAA----CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (678)
Q Consensus 143 ~g~~~~~~iQ~~----~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 218 (678)
+.|. |+|.|.+ ++..+..|.++++.+|||+|||++|++|++..+..........+++|+++|..+..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 3455 6999998 4555667899999999999999999999998776544322345799999999998888777765
Q ss_pred H
Q 005773 219 I 219 (678)
Q Consensus 219 l 219 (678)
+
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 170
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.06 E-value=1.6e-09 Score=112.23 Aligned_cols=76 Identities=28% Similarity=0.291 Sum_probs=60.0
Q ss_pred cCCCCCcHHHHH----HHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 005773 143 LGYSKPTPIQAA----CIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (678)
Q Consensus 143 ~g~~~~~~iQ~~----~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 218 (678)
+.|. |+|.|.+ ++..+..|.++++.+|||+|||++|++|++..+..........+++|+++|..+..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 3455 6999998 4555667899999999999999999999998776544322345799999999998888777765
Q ss_pred H
Q 005773 219 I 219 (678)
Q Consensus 219 l 219 (678)
+
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.82 E-value=6.3e-08 Score=97.85 Aligned_cols=131 Identities=26% Similarity=0.345 Sum_probs=97.0
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
+|+ .|++.|..++-.+..|+ |+...||-|||++..+|++-..+ .+..|=|++.+..||..=++++..+..+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL------~G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL------QGKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT------TSS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH------hcCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 455 49999999987776666 99999999999987777765543 3446889999999999999999999999
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccC----cc-CCCCeeEEEEeCCcccc
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM----SV-DLDDLAVLILDEADRLL 284 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~----~~-~l~~i~~lVvDEah~ll 284 (678)
.|++++++.++.+......... ++|+++|...| .++|+... .. ....+.++||||+|.++
T Consensus 145 LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp TT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999999887655444433 58999999876 34554321 11 25678999999999876
No 172
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.48 E-value=4.5e-07 Score=102.91 Aligned_cols=102 Identities=15% Similarity=0.148 Sum_probs=90.2
Q ss_pred ceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC-ccE-EEEcccccccCCCCCccEEEEcCCC
Q 005773 371 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH-VDF-LIATDVAARGLDIIGVQTVINYACP 448 (678)
Q Consensus 371 ~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~-~~v-LvaT~~~~~GlDi~~v~~VI~~d~p 448 (678)
.+++||+.-...+..+...|...++....+.|.|+...|.+.+..|..+. ..| |++.-+.+-|||+..+.+|+..|+=
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 38999999999999999988889999999999999999999999999654 333 5677888999999999999999999
Q ss_pred CChhHHHHHHhhcccCCCceEEEE
Q 005773 449 RDLTSYVHRVGRTARAGREGYAVT 472 (678)
Q Consensus 449 ~s~~~yiQr~GRagR~g~~G~~i~ 472 (678)
|||..--|.+.|++|.|+.-.+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999996544433
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.38 E-value=1.1e-05 Score=93.74 Aligned_cols=69 Identities=20% Similarity=0.131 Sum_probs=55.6
Q ss_pred CCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccCh
Q 005773 245 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314 (678)
Q Consensus 245 ~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~ 314 (678)
....|+++||..|..-|-.+ .+.+..+..|||||||++....-...+..+.+...+..-+.+|||.+..
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~-ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTG-IIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred hcCCEEEEechhhHhHHhcC-CCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 34579999999997666554 6889999999999999998665566666777777777889999999874
No 174
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.32 E-value=7.4e-05 Score=84.42 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=50.2
Q ss_pred ccCCceEEEEeccHHHHHHHHHHHhhc-------CCceeeccCCCCHHHHHHHHHHHhc--------CCccEEEEccccc
Q 005773 367 KTFTSKVIIFSGTKQAAHRLKILFGLA-------ALKAAELHGNLTQAQRLEALELFRK--------QHVDFLIATDVAA 431 (678)
Q Consensus 367 ~~~~~~vLVF~~s~~~~~~l~~~L~~~-------~~~~~~lhg~l~~~~R~~~l~~F~~--------g~~~vLvaT~~~~ 431 (678)
+..+.++|||++++...+.+..+.... +++-. +-+=-+..+-.+++..|-+ |-.-+.||---++
T Consensus 558 rvVp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l-~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVS 636 (945)
T KOG1132|consen 558 RVVPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKL-VVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVS 636 (945)
T ss_pred hhcccceEEeccchHHHHHHHHHHHcchHHHHhhcccCc-eeccCCccchHHHHHHHHHHhhCccccceEEEEEeccccc
Confidence 344567999999999988885555432 11111 1111122233344444432 3334567777889
Q ss_pred ccCCCCC--ccEEEEcCCCC
Q 005773 432 RGLDIIG--VQTVINYACPR 449 (678)
Q Consensus 432 ~GlDi~~--v~~VI~~d~p~ 449 (678)
+|||+.+ .+.||..++|.
T Consensus 637 EGlDFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 637 EGLDFSDDNGRAVIITGLPY 656 (945)
T ss_pred CCCCccccCCceeEEecCCC
Confidence 9999965 67899999885
No 175
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.31 E-value=2.9e-06 Score=85.07 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=51.3
Q ss_pred CCcHHHHHHHHHHhcCCC-EEEEcCCCchhhhhhhhchhHHHhcC---CCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 005773 147 KPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYR---PKRIPAIRVLILTPTRELAVQVHSMIEK 218 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~d-vl~~a~TGsGKT~~~~l~~l~~l~~~---~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 218 (678)
++++-|..++..++.... .++.||.|+|||.+ +..++..++.+ .....+.++||++|+...+..+.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999998 89999999999965 45556555321 1123466899999999999988888776
No 176
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.29 E-value=4.2e-07 Score=103.33 Aligned_cols=132 Identities=23% Similarity=0.308 Sum_probs=97.5
Q ss_pred CCcHHHHHHHHHHhc-CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCc
Q 005773 147 KPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDI 225 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~-g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~ 225 (678)
.+.|+|.+.+..+.. ..++++.+|||+|||.+|-+.++..+..- +..+|++++|..+|+..-.+.........|+
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~----p~~kvvyIap~kalvker~~Dw~~r~~~~g~ 1002 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY----PGSKVVYIAPDKALVKERSDDWSKRDELPGI 1002 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC----CCccEEEEcCCchhhcccccchhhhcccCCc
Confidence 455666666544333 35788999999999999999988777654 3468999999999987655555554445588
Q ss_pred eeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccC-ccCCCCeeEEEEeCCccccc
Q 005773 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM-SVDLDDLAVLILDEADRLLE 285 (678)
Q Consensus 226 ~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~-~~~l~~i~~lVvDEah~ll~ 285 (678)
++.-+.|........ ...++|+|+||+....+.++.. ...+.+++.+|+||.|++..
T Consensus 1003 k~ie~tgd~~pd~~~---v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 1003 KVIELTGDVTPDVKA---VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred eeEeccCccCCChhh---eecCceEEcccccccCccccccchhhhccccceeecccccccC
Confidence 898888877665221 2347899999999887776433 23478899999999998764
No 177
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.29 E-value=9.9e-08 Score=106.90 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=58.7
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc---CCccEEEEccccccc
Q 005773 368 TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK---QHVDFLIATDVAARG 433 (678)
Q Consensus 368 ~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~---g~~~vLvaT~~~~~G 433 (678)
..+++|+||.+.....+.+..++...+ .+..+.|.....+|..++..|+. .++.+|++|.+.+.|
T Consensus 629 ~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 629 SSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 457899999999999999999999999 99999999999999999999983 467899999988765
No 178
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.27 E-value=6.5e-06 Score=95.80 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=54.2
Q ss_pred CccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCC--Cce-------E-EEEEeeCCcHHHHHHHHHHh
Q 005773 420 HVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAG--REG-------Y-AVTFVTDNDRSLLKAIAKRA 489 (678)
Q Consensus 420 ~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g--~~G-------~-~i~l~~~~d~~~l~~i~~~~ 489 (678)
..+++++-.++.+|.|-|+|-.+..+.-..|...-.|.+||.-|.. +.| . -.++++.....+...|.+.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999999998889999999999988831 111 2 22345566677777766654
No 179
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.26 E-value=3.9e-05 Score=86.23 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=57.7
Q ss_pred CCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccC--CCceE-----------EEEEeeCCcHHHHHHH
Q 005773 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARA--GREGY-----------AVTFVTDNDRSLLKAI 485 (678)
Q Consensus 419 g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~--g~~G~-----------~i~l~~~~d~~~l~~i 485 (678)
...+++.+-.++.+|.|=|+|=+++-.....|..+=+|.+||.-|. +..|. -.++++..+..+++.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3577999999999999999999999999999999999999998882 33343 2346677788888888
Q ss_pred HHHh
Q 005773 486 AKRA 489 (678)
Q Consensus 486 ~~~~ 489 (678)
.+.+
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 7654
No 180
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.23 E-value=3.9e-06 Score=79.83 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=72.0
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCC--ceeeccCCCCHHHHHHHHHHHhcCCccEEEEcc--cccccCCCCC--ccEE
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLAAL--KAAELHGNLTQAQRLEALELFRKQHVDFLIATD--VAARGLDIIG--VQTV 442 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~~~--~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~--~~~~GlDi~~--v~~V 442 (678)
.++++|||++|+..++.+...+..... ....+.. ....+..+++.|+.+...||+++. .+.+|+|+++ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 358999999999999999999876532 2223332 356788999999999999999998 8999999997 8889
Q ss_pred EEcCCCCC-h---h--------------------------HHHHHHhhcccCCCceEEEEEeeC
Q 005773 443 INYACPRD-L---T--------------------------SYVHRVGRTARAGREGYAVTFVTD 476 (678)
Q Consensus 443 I~~d~p~s-~---~--------------------------~yiQr~GRagR~g~~G~~i~l~~~ 476 (678)
|...+|.. + . ...|.+||+-|....--++++++.
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 99999851 1 1 124899999996655444444443
No 181
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.02 E-value=9.4e-05 Score=80.85 Aligned_cols=85 Identities=20% Similarity=0.174 Sum_probs=66.8
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 005773 138 RACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (678)
Q Consensus 138 ~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 217 (678)
+.+...|+..+..-|..|+.++|+..=.|+.||+|+|||.+ ...++-++... ...+|||++|+...+.|+.+.+.
T Consensus 401 ~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvt-sa~IVyhl~~~----~~~~VLvcApSNiAVDqLaeKIh 475 (935)
T KOG1802|consen 401 RRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ----HAGPVLVCAPSNIAVDQLAEKIH 475 (935)
T ss_pred hhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceeh-hHHHHHHHHHh----cCCceEEEcccchhHHHHHHHHH
Confidence 34555688899999999999999999999999999999987 44455555444 34569999999999999988877
Q ss_pred HHhhcCCceeEEEe
Q 005773 218 KIAQFTDIRCCLVV 231 (678)
Q Consensus 218 ~l~~~~~~~v~~~~ 231 (678)
+ ++++|+-+.
T Consensus 476 ~----tgLKVvRl~ 485 (935)
T KOG1802|consen 476 K----TGLKVVRLC 485 (935)
T ss_pred h----cCceEeeee
Confidence 6 456555443
No 182
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.00 E-value=2.6e-05 Score=76.21 Aligned_cols=124 Identities=24% Similarity=0.237 Sum_probs=70.5
Q ss_pred CCcHHHHHHHHHHhcCC--CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 005773 147 KPTPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~--dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~ 224 (678)
++++-|.+++..++.+. -+++.|+.|+|||.+ +-.+...+... +.+|++++||...+..+.+.. +
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~-----g~~v~~~apT~~Aa~~L~~~~-------~ 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA-----GKRVIGLAPTNKAAKELREKT-------G 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT-----T--EEEEESSHHHHHHHHHHH-------T
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC-----CCeEEEECCcHHHHHHHHHhh-------C
Confidence 47899999999998654 366889999999975 44454444332 357999999998877654441 2
Q ss_pred ceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccC---ccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCC
Q 005773 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM---SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301 (678)
Q Consensus 225 ~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~---~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~ 301 (678)
+.+. |-..++....... ...+....+||||||-.+.. ..+..++..++.
T Consensus 68 ~~a~------------------------Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~----~~~~~ll~~~~~ 119 (196)
T PF13604_consen 68 IEAQ------------------------TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS----RQLARLLRLAKK 119 (196)
T ss_dssp S-EE------------------------EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH----HHHHHHHHHS-T
T ss_pred cchh------------------------hHHHHHhcCCcccccccccCCcccEEEEecccccCH----HHHHHHHHHHHh
Confidence 2221 2111111111100 00144567999999997653 345666777766
Q ss_pred -CccEEEEEec
Q 005773 302 -RRQTMLFSAT 311 (678)
Q Consensus 302 -~~q~il~SAT 311 (678)
..++|++.=+
T Consensus 120 ~~~klilvGD~ 130 (196)
T PF13604_consen 120 SGAKLILVGDP 130 (196)
T ss_dssp -T-EEEEEE-T
T ss_pred cCCEEEEECCc
Confidence 4555555543
No 183
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.91 E-value=0.0041 Score=66.64 Aligned_cols=107 Identities=17% Similarity=0.184 Sum_probs=67.4
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCC------ceeeccCCCCHHHHHHHHHHHh----cCCccEE--EEcccccccCCC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLAAL------KAAELHGNLTQAQRLEALELFR----KQHVDFL--IATDVAARGLDI 436 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~~~------~~~~lhg~l~~~~R~~~l~~F~----~g~~~vL--vaT~~~~~GlDi 436 (678)
.+++++.|++++.-.+.+.......|+ .-..+-+.-+..+-.-++...+ +|+--|| |+-.-.++|+|+
T Consensus 529 vpdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF 608 (755)
T KOG1131|consen 529 VPDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDF 608 (755)
T ss_pred CCCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCccc
Confidence 356788999998777766554444432 1123334444444445555444 4555555 455667899999
Q ss_pred CCcc--EEEEcCCCCChh------------------------------HHHHHHhhcccCCCceEEEEEeeC
Q 005773 437 IGVQ--TVINYACPRDLT------------------------------SYVHRVGRTARAGREGYAVTFVTD 476 (678)
Q Consensus 437 ~~v~--~VI~~d~p~s~~------------------------------~yiQr~GRagR~g~~G~~i~l~~~ 476 (678)
.+-. .||+++.|.... .-.|..||+-| |+.-+.++++.+
T Consensus 609 ~hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr-~K~dYg~mI~aD 679 (755)
T KOG1131|consen 609 DHHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLR-GKTDYGLMIFAD 679 (755)
T ss_pred ccccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHh-ccccceeeEeee
Confidence 7754 899999997322 11378899998 666666666654
No 184
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.88 E-value=0.00014 Score=74.11 Aligned_cols=171 Identities=19% Similarity=0.169 Sum_probs=107.7
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc----------CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEE
Q 005773 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALT----------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV 199 (678)
Q Consensus 130 l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~----------g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~v 199 (678)
+.|+..+... ..++..|.+++-.+.+ ..-.++...||.||.-+..--+++.++... .+.
T Consensus 26 ~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr-----~r~ 94 (303)
T PF13872_consen 26 LHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR-----KRA 94 (303)
T ss_pred cCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC-----Cce
Confidence 4566655443 2478899888876642 346889999999999775566666665432 357
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCcc--CC--------
Q 005773 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV--DL-------- 269 (678)
Q Consensus 200 LIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~--~l-------- 269 (678)
|++..+..|-....+-+..+... .+.+..+...... ....-.-.||++|+-.|...-...... .+
T Consensus 95 vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g 169 (303)
T PF13872_consen 95 VWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCG 169 (303)
T ss_pred EEEECChhhhhHHHHHHHHhCCC-cccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHh
Confidence 99999999988877777776543 3333333221110 001123469999999887764321111 01
Q ss_pred -CCeeEEEEeCCcccccCCh--------HHHHHHHHHHCCCCccEEEEEeccChhHH
Q 005773 270 -DDLAVLILDEADRLLELGF--------SAEIHELVRLCPKRRQTMLFSATLTEDVD 317 (678)
Q Consensus 270 -~~i~~lVvDEah~ll~~gf--------~~~i~~i~~~~~~~~q~il~SATl~~~~~ 317 (678)
..=.+||+||||..-+..- ...+..+.+.+|..+ ++++|||--.+..
T Consensus 170 ~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~AR-vvY~SATgasep~ 225 (303)
T PF13872_consen 170 EDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNAR-VVYASATGASEPR 225 (303)
T ss_pred cCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCc-EEEecccccCCCc
Confidence 1123899999999876432 134555666776554 9999999765444
No 185
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.84 E-value=3.7e-05 Score=83.67 Aligned_cols=64 Identities=20% Similarity=0.339 Sum_probs=50.7
Q ss_pred CCcHHHHHHHHHHhcCCC-EEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 005773 147 KPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~d-vl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 216 (678)
.+.+-|..|+..+.+.++ .++.||+|+|||.+ +.-++..+... +.+|||.+||...+..+.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~T-lvEiI~qlvk~-----~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRT-LVEIISQLVKQ-----KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceee-HHHHHHHHHHc-----CCeEEEEcCchHHHHHHHHHh
Confidence 478899999999999876 45899999999988 45555555544 357999999999988877753
No 186
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.81 E-value=0.00015 Score=82.18 Aligned_cols=144 Identities=19% Similarity=0.199 Sum_probs=86.9
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeE
Q 005773 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228 (678)
Q Consensus 149 ~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~ 228 (678)
...|+.++..++.++-+++.|+.|+|||++ +..++..+..........++++++||--.|..+.+.+.......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc--
Confidence 379999999999999999999999999976 45555544432211113579999999999888777665422111100
Q ss_pred EEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccC-----ccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCc
Q 005773 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM-----SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303 (678)
Q Consensus 229 ~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~-----~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~ 303 (678)
. . +.....+-..|-.+|+....... .-....+++||||||-.+-. ..+..+++.++...
T Consensus 224 -------~-~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~----~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 -------E-A----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL----PLMAKLLKALPPNT 287 (586)
T ss_pred -------h-h----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH----HHHHHHHHhcCCCC
Confidence 0 0 00000112334334332211100 01223578999999986542 34566778888888
Q ss_pred cEEEEEec
Q 005773 304 QTMLFSAT 311 (678)
Q Consensus 304 q~il~SAT 311 (678)
++|++.=.
T Consensus 288 rlIlvGD~ 295 (586)
T TIGR01447 288 KLILLGDK 295 (586)
T ss_pred EEEEECCh
Confidence 87776543
No 187
>PF13245 AAA_19: Part of AAA domain
Probab=97.79 E-value=5.4e-05 Score=61.55 Aligned_cols=60 Identities=28% Similarity=0.386 Sum_probs=41.9
Q ss_pred HHHHHhcCCC-EEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 005773 155 CIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (678)
Q Consensus 155 ~i~~ll~g~d-vl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 216 (678)
++...+.+.. +++.||.|||||.+ ++.++..+....... +.++||++||+.++..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~-~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTT-LAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHH-HHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443344444 55699999999976 566666665432222 567999999999999887776
No 188
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.76 E-value=0.00022 Score=70.06 Aligned_cols=152 Identities=21% Similarity=0.231 Sum_probs=95.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc---CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEE
Q 005773 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALT---GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (678)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~---g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl 202 (678)
+|....-+.+|+=-+.. ++ -+++.|.+++..+.+ |.|.+...-||.|||.+ ++|++..++....+ -|-++
T Consensus 4 ~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~----Lvrvi 76 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR----LVRVI 76 (229)
T ss_pred CCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc----EEEEE
Confidence 45555566666554432 34 389999999998886 57999999999999987 89999888765443 46677
Q ss_pred cCcHHHHHHHHHHHHHHh-hcCCceeEEEecC--CChHH-----HH---HHhcCCCCEEEECchHHHHHHhc-------c
Q 005773 203 TPTRELAVQVHSMIEKIA-QFTDIRCCLVVGG--LSTKM-----QE---TALRSMPDIVVATPGRMIDHLRN-------S 264 (678)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~-~~~~~~v~~~~g~--~~~~~-----~~---~~l~~~~dIiv~Tp~~L~~~l~~-------~ 264 (678)
+|. +|..|..+.+..-. .-.+-++..+--. ..... .. ........|+++||+.++...-. .
T Consensus 77 Vpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~ 155 (229)
T PF12340_consen 77 VPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDG 155 (229)
T ss_pred cCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhc
Confidence 774 78899888876533 2233333333221 11111 11 11223457999999987543211 1
Q ss_pred Cc----------cCCCCeeEEEEeCCccccc
Q 005773 265 MS----------VDLDDLAVLILDEADRLLE 285 (678)
Q Consensus 265 ~~----------~~l~~i~~lVvDEah~ll~ 285 (678)
.. -.+.....-|+||+|.++.
T Consensus 156 ~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 156 KPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 00 0133445679999998765
No 189
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.72 E-value=8.8e-05 Score=72.21 Aligned_cols=146 Identities=17% Similarity=0.160 Sum_probs=72.5
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHH----HHHHHHhh
Q 005773 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH----SMIEKIAQ 221 (678)
Q Consensus 146 ~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~----~~~~~l~~ 221 (678)
...+.-|..++..++...-+++.||.|||||+..+..+++.+.... -.+++|+-|+.+....+- +.-.++..
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~----~~kiii~Rp~v~~~~~lGflpG~~~eK~~p 78 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE----YDKIIITRPPVEAGEDLGFLPGDLEEKMEP 78 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-----SEEEEEE-S--TT----SS---------T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC----CcEEEEEecCCCCccccccCCCCHHHHHHH
Confidence 4568899999999998888889999999999988888887776522 336788888765311100 00001100
Q ss_pred cCC-c--eeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHH
Q 005773 222 FTD-I--RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL 298 (678)
Q Consensus 222 ~~~-~--~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~ 298 (678)
+.. + ....+.+... ...+.....|-+.++..+. .-.+. -.+||||||+.+. ...+..++..
T Consensus 79 ~~~p~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~iR-------Grt~~-~~~iIvDEaQN~t----~~~~k~ilTR 142 (205)
T PF02562_consen 79 YLRPIYDALEELFGKEK----LEELIQNGKIEIEPLAFIR-------GRTFD-NAFIIVDEAQNLT----PEELKMILTR 142 (205)
T ss_dssp TTHHHHHHHTTTS-TTC----HHHHHHTTSEEEEEGGGGT-------T--B--SEEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHhChHh----HHHHhhcCeEEEEehhhhc-------Ccccc-ceEEEEecccCCC----HHHHHHHHcc
Confidence 000 0 0000001111 1112223456666654442 12222 3799999999874 3566777777
Q ss_pred CCCCccEEEEEec
Q 005773 299 CPKRRQTMLFSAT 311 (678)
Q Consensus 299 ~~~~~q~il~SAT 311 (678)
+..+.+++++.-.
T Consensus 143 ~g~~skii~~GD~ 155 (205)
T PF02562_consen 143 IGEGSKIIITGDP 155 (205)
T ss_dssp B-TT-EEEEEE--
T ss_pred cCCCcEEEEecCc
Confidence 7777777766543
No 190
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.70 E-value=0.00022 Score=81.07 Aligned_cols=143 Identities=20% Similarity=0.194 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeE
Q 005773 149 TPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCC 228 (678)
Q Consensus 149 ~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~ 228 (678)
.++|+.|+-.++.++-+++.|++|+|||++ +..++..+..... ....++++++||...|..+.+.+.......++.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~~-~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~-- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLT-- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhcC-CCCcEEEEECCcHHHHHHHHHHHHhhhhccccc--
Confidence 589999999999999999999999999976 4445554433221 123578999999999998887765432221110
Q ss_pred EEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccC-----ccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCc
Q 005773 229 LVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM-----SVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRR 303 (678)
Q Consensus 229 ~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~-----~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~ 303 (678)
... ......-..|-.+|+....... ..+.-.+++||||||-.+- ...+..+++.++...
T Consensus 230 -------~~~-----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~ 293 (615)
T PRK10875 230 -------DEQ-----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHA 293 (615)
T ss_pred -------hhh-----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCC
Confidence 000 0000011233333322111110 0122346899999999653 344566777888888
Q ss_pred cEEEEEec
Q 005773 304 QTMLFSAT 311 (678)
Q Consensus 304 q~il~SAT 311 (678)
++|++.=.
T Consensus 294 rlIlvGD~ 301 (615)
T PRK10875 294 RVIFLGDR 301 (615)
T ss_pred EEEEecch
Confidence 88877654
No 191
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.69 E-value=7.8e-05 Score=79.94 Aligned_cols=108 Identities=22% Similarity=0.270 Sum_probs=67.5
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l 243 (678)
-++|.|..|||||+. ++.++..+... ..+..+++++++..|...++..+..-. ..
T Consensus 3 v~~I~G~aGTGKTvl-a~~l~~~l~~~---~~~~~~~~l~~n~~l~~~l~~~l~~~~----------~~----------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVL-ALNLAKELQNS---EEGKKVLYLCGNHPLRNKLREQLAKKY----------NP----------- 57 (352)
T ss_pred EEEEEecCCcCHHHH-HHHHHHHhhcc---ccCCceEEEEecchHHHHHHHHHhhhc----------cc-----------
Confidence 367999999999987 56666655111 224568999999999888777776522 00
Q ss_pred cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCC-------hHHHHHHHHHH
Q 005773 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-------FSAEIHELVRL 298 (678)
Q Consensus 244 ~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g-------f~~~i~~i~~~ 298 (678)
......+.+|..++..+.. .......+++|||||||++...+ ..+.+..+++.
T Consensus 58 -~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 -KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0012234445555443331 12345688999999999998732 23555566555
No 192
>PRK10536 hypothetical protein; Provisional
Probab=97.62 E-value=0.00077 Score=67.55 Aligned_cols=143 Identities=18% Similarity=0.213 Sum_probs=80.3
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHH-----------HH
Q 005773 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV-----------QV 212 (678)
Q Consensus 144 g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~-----------Q~ 212 (678)
++...+..|...+.++..+..+++.|++|+|||+.....+++.+.... -.+++|.=|+.+... .+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~----~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD----VDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC----eeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 455678899999999988888889999999999876555555554321 335667767654321 11
Q ss_pred HHHHHHHhhcCCceeEEEecCCChHHHHHHhc-CCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHH
Q 005773 213 HSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 291 (678)
Q Consensus 213 ~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~ 291 (678)
.-++.-+..... .+.|. ......+. ....|-|.....+ +.. .+ .-.+||||||+.+.. ..
T Consensus 132 ~p~~~pi~D~L~----~~~~~---~~~~~~~~~~~~~Iei~~l~ym----RGr---tl-~~~~vIvDEaqn~~~----~~ 192 (262)
T PRK10536 132 APYFRPVYDVLV----RRLGA---SFMQYCLRPEIGKVEIAPFAYM----RGR---TF-ENAVVILDEAQNVTA----AQ 192 (262)
T ss_pred HHHHHHHHHHHH----HHhCh---HHHHHHHHhccCcEEEecHHHh----cCC---cc-cCCEEEEechhcCCH----HH
Confidence 111111111000 01111 11111111 1234556553333 321 22 236999999998743 56
Q ss_pred HHHHHHHCCCCccEEEEE
Q 005773 292 IHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 292 i~~i~~~~~~~~q~il~S 309 (678)
+..++..++.+.++|++.
T Consensus 193 ~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 193 MKMFLTRLGENVTVIVNG 210 (262)
T ss_pred HHHHHhhcCCCCEEEEeC
Confidence 677777777777666544
No 193
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.60 E-value=0.00046 Score=79.34 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=53.4
Q ss_pred CCCcHHHHHHHHHHhcC-CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 005773 146 SKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (678)
Q Consensus 146 ~~~~~iQ~~~i~~ll~g-~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 218 (678)
..+++.|..++..++.. ..+++.||+|+|||.+ +..++..+... +.+||+++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-~~~ii~~~~~~-----g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT-LVELIRQLVKR-----GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH-HHHHHHHHHHc-----CCCEEEEcCcHHHHHHHHHHHHh
Confidence 35799999999999887 5677999999999976 45555555432 34799999999999988887765
No 194
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.58 E-value=0.00064 Score=79.38 Aligned_cols=133 Identities=19% Similarity=0.170 Sum_probs=79.9
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
.++ .+++-|++++..+..++-+++.|+.|+|||++ +-.++..+.... ....+++++||-..|..+.+.
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~~---~~~~v~l~ApTg~AA~~L~e~------- 387 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEELG---GLLPVGLAAPTGRAAKRLGEV------- 387 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHcC---CCceEEEEeCchHHHHHHHHh-------
Confidence 454 59999999999999999999999999999975 344444443221 114688999998887654332
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCC
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~ 302 (678)
++.....+ ...+... |+..... . .-.....++||||||+.+..+ .+..++..++..
T Consensus 388 ~g~~a~Ti---------h~lL~~~-------~~~~~~~--~--~~~~~~~~llIvDEaSMvd~~----~~~~Ll~~~~~~ 443 (720)
T TIGR01448 388 TGLTASTI---------HRLLGYG-------PDTFRHN--H--LEDPIDCDLLIVDESSMMDTW----LALSLLAALPDH 443 (720)
T ss_pred cCCccccH---------HHHhhcc-------CCccchh--h--hhccccCCEEEEeccccCCHH----HHHHHHHhCCCC
Confidence 12111100 0111100 1000000 0 001235679999999987543 345666777877
Q ss_pred ccEEEEEec
Q 005773 303 RQTMLFSAT 311 (678)
Q Consensus 303 ~q~il~SAT 311 (678)
.++|++.=+
T Consensus 444 ~rlilvGD~ 452 (720)
T TIGR01448 444 ARLLLVGDT 452 (720)
T ss_pred CEEEEECcc
Confidence 887776543
No 195
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.22 E-value=0.00056 Score=71.79 Aligned_cols=124 Identities=23% Similarity=0.217 Sum_probs=73.5
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCcee
Q 005773 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227 (678)
Q Consensus 148 ~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v 227 (678)
+++-|..+|.. ...+++|.|..|||||.+.+.-++..+ .... ..+.++|+|++|+.+|..+.+.+...........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll-~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~ 76 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLL-YEGG-VPPERILVLTFTNAAAQEMRERIRELLEEEQQES 76 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHH-HTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhh-cccc-CChHHheecccCHHHHHHHHHHHHHhcCcccccc
Confidence 57889999987 677899999999999998444444444 3332 4566799999999999999998888654322100
Q ss_pred EEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCC-CCeeEEEEeCCc
Q 005773 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDL-DDLAVLILDEAD 281 (678)
Q Consensus 228 ~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l-~~i~~lVvDEah 281 (678)
...............+.|+|-..+...+-....... -.-.+-++|+..
T Consensus 77 ------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 77 ------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 000011122222346888898777554432111111 112356666666
No 196
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.22 E-value=0.0007 Score=61.20 Aligned_cols=17 Identities=41% Similarity=0.372 Sum_probs=12.0
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
++.+++.|++|+|||.+
T Consensus 4 ~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTL 20 (131)
T ss_dssp ---EEEEE-TTSSHHHH
T ss_pred CcccEEEcCCCCCHHHH
Confidence 45688999999999976
No 197
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.14 E-value=0.0029 Score=58.11 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=47.7
Q ss_pred HHHHHHHHhhcCC------ceeeccCCCCHHHHHHHHHHHhcCCc-cEEEEcccccccCCCCC--ccEEEEcCCCC
Q 005773 383 AHRLKILFGLAAL------KAAELHGNLTQAQRLEALELFRKQHV-DFLIATDVAARGLDIIG--VQTVINYACPR 449 (678)
Q Consensus 383 ~~~l~~~L~~~~~------~~~~lhg~l~~~~R~~~l~~F~~g~~-~vLvaT~~~~~GlDi~~--v~~VI~~d~p~ 449 (678)
.+.+...+...+. ....+..+....+...+++.|+...- .||++|..+.+|+|+++ ++.||...+|.
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3444445544433 23445555666678889999987543 79999988999999998 67899888885
No 198
>PRK08181 transposase; Validated
Probab=97.12 E-value=0.0077 Score=61.63 Aligned_cols=111 Identities=21% Similarity=0.210 Sum_probs=61.5
Q ss_pred HHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChH
Q 005773 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237 (678)
Q Consensus 158 ~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~ 237 (678)
++-.+++++++||+|+|||.. +..+.+.+... +..|++ ++...|..++..... .
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHL-a~Aia~~a~~~-----g~~v~f-~~~~~L~~~l~~a~~---------------~---- 155 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHL-AAAIGLALIEN-----GWRVLF-TRTTDLVQKLQVARR---------------E---- 155 (269)
T ss_pred HHhcCceEEEEecCCCcHHHH-HHHHHHHHHHc-----CCceee-eeHHHHHHHHHHHHh---------------C----
Confidence 445678999999999999965 33444444332 223444 455566554422100 0
Q ss_pred HHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCC-hHHHHHHHHHHCCCCccEEEEEeccChhH
Q 005773 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (678)
Q Consensus 238 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g-f~~~i~~i~~~~~~~~q~il~SATl~~~~ 316 (678)
.+...++..+ .+.++|||||.+.+.... -...+..+++.......+|+.|-..+.+.
T Consensus 156 --------------~~~~~~l~~l--------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w 213 (269)
T PRK08181 156 --------------LQLESAIAKL--------DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEW 213 (269)
T ss_pred --------------CcHHHHHHHH--------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 0111222222 356699999999765332 23456777766554455666665555443
No 199
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.00 E-value=0.0026 Score=64.59 Aligned_cols=80 Identities=19% Similarity=0.369 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCccEEEEcccccccCCCCC--------ccEEEEcCCCCChhHHHHHHhhcccCCC-ceEEEEEeeCC---
Q 005773 410 LEALELFRKQHVDFLIATDVAARGLDIIG--------VQTVINYACPRDLTSYVHRVGRTARAGR-EGYAVTFVTDN--- 477 (678)
Q Consensus 410 ~~~l~~F~~g~~~vLvaT~~~~~GlDi~~--------v~~VI~~d~p~s~~~yiQr~GRagR~g~-~G~~i~l~~~~--- 477 (678)
....+.|++|+..|+|.|++++.||.+.. -++-|...+||+....+|..||++|.|+ ....|.++..+
T Consensus 51 ~~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~g 130 (278)
T PF13871_consen 51 IAEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPG 130 (278)
T ss_pred HHHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHH
Confidence 35677899999999999999999998863 2456788999999999999999999886 35556655443
Q ss_pred cHHHHHHHHHHh
Q 005773 478 DRSLLKAIAKRA 489 (678)
Q Consensus 478 d~~~l~~i~~~~ 489 (678)
+..+...+.+++
T Consensus 131 E~Rfas~va~rL 142 (278)
T PF13871_consen 131 ERRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHHH
Confidence 555665565543
No 200
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.0081 Score=64.63 Aligned_cols=131 Identities=17% Similarity=0.144 Sum_probs=69.3
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCc-HHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHH
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT-RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Pt-r~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (678)
+.+++.||||+|||++. .-+..++..........-.||-+-| |.-+.. ++..++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~-aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~------------ 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTI-AKLAAIYGINSDDKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKA------------ 238 (388)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHHHhhhccCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEe------------
Confidence 46789999999999873 3333333221111111223333333 444432 244444444554322
Q ss_pred HhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCC-hHHHHHHHHHHCCCC-ccEEEEEeccChh-HHH
Q 005773 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCPKR-RQTMLFSATLTED-VDE 318 (678)
Q Consensus 242 ~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g-f~~~i~~i~~~~~~~-~q~il~SATl~~~-~~~ 318 (678)
+.++..+...+.. +.++++||||++.+..... ....+..++...... --.+.+|||.... +.+
T Consensus 239 ---------~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~ 304 (388)
T PRK12723 239 ---------IESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE 304 (388)
T ss_pred ---------eCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH
Confidence 1234444444443 2467899999999875321 234555666655433 3568899998744 344
Q ss_pred HHHHh
Q 005773 319 LIKLS 323 (678)
Q Consensus 319 l~~~~ 323 (678)
.+..+
T Consensus 305 ~~~~~ 309 (388)
T PRK12723 305 IFHQF 309 (388)
T ss_pred HHHHh
Confidence 44433
No 201
>PRK06526 transposase; Provisional
Probab=96.97 E-value=0.0078 Score=61.17 Aligned_cols=46 Identities=17% Similarity=0.065 Sum_probs=28.2
Q ss_pred CeeEEEEeCCcccccCC-hHHHHHHHHHHCCCCccEEEEEeccChhH
Q 005773 271 DLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~g-f~~~i~~i~~~~~~~~q~il~SATl~~~~ 316 (678)
.+.+|||||+|.+.... -...+..+++.......+|+.|...+...
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w 205 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRW 205 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHH
Confidence 46799999999764222 23345566654433445777777765543
No 202
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.93 E-value=0.0041 Score=57.27 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=45.0
Q ss_pred HHHHHHHHhhcCC---ceeeccCCCCHHHHHHHHHHHhcCCc---cEEEEccc--ccccCCCCC--ccEEEEcCCCC
Q 005773 383 AHRLKILFGLAAL---KAAELHGNLTQAQRLEALELFRKQHV---DFLIATDV--AARGLDIIG--VQTVINYACPR 449 (678)
Q Consensus 383 ~~~l~~~L~~~~~---~~~~lhg~l~~~~R~~~l~~F~~g~~---~vLvaT~~--~~~GlDi~~--v~~VI~~d~p~ 449 (678)
.+.+...+...+. ....+.......+...+++.|++... .||+++.. +++|||+++ ++.||..++|.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 4455555554433 22233333334455788888987543 68888877 899999998 68899988885
No 203
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.87 E-value=0.011 Score=69.32 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 005773 132 LSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (678)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g-~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~ 210 (678)
+++..+...-..++ .+++-|..++..++.+ +-+++.|+.|+|||++ +-.+++.+ .. .+.+|++++||--.+.
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~-~~----~g~~V~~~ApTg~Aa~ 410 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAW-EA----AGYRVIGAALSGKAAE 410 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHH-Hh----CCCeEEEEeCcHHHHH
Confidence 44444333333344 4899999999999885 5667999999999975 33344333 22 2457899999987765
Q ss_pred HH
Q 005773 211 QV 212 (678)
Q Consensus 211 Q~ 212 (678)
.+
T Consensus 411 ~L 412 (744)
T TIGR02768 411 GL 412 (744)
T ss_pred HH
Confidence 44
No 204
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.84 E-value=0.012 Score=70.36 Aligned_cols=63 Identities=21% Similarity=0.084 Sum_probs=46.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCC-EEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 005773 143 LGYSKPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~d-vl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~ 212 (678)
.|+ .+++-|..++..++.+++ +++.|..|+|||++ +-.++..+ .. .+.+|+.++||--.|..+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~-e~----~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAW-EA----AGYEVRGAALSGIAAENL 406 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHH-HH----cCCeEEEecCcHHHHHHH
Confidence 454 499999999999999765 56999999999975 34444333 22 245799999998776543
No 205
>PRK04296 thymidine kinase; Provisional
Probab=96.78 E-value=0.0038 Score=60.64 Aligned_cols=109 Identities=16% Similarity=0.167 Sum_probs=58.0
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCc---HHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHH
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT---RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Pt---r~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~ 240 (678)
=.++.|++|+|||+. ++-++.++... +.+|+|+-|. +.... .+....++.+.
T Consensus 4 i~litG~~GsGKTT~-~l~~~~~~~~~-----g~~v~i~k~~~d~~~~~~-------~i~~~lg~~~~------------ 58 (190)
T PRK04296 4 LEFIYGAMNSGKSTE-LLQRAYNYEER-----GMKVLVFKPAIDDRYGEG-------KVVSRIGLSRE------------ 58 (190)
T ss_pred EEEEECCCCCHHHHH-HHHHHHHHHHc-----CCeEEEEeccccccccCC-------cEecCCCCccc------------
Confidence 467899999999976 55555555432 3467888663 22111 11111111110
Q ss_pred HHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEecc
Q 005773 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (678)
Q Consensus 241 ~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl 312 (678)
.+.+..+..++..+.. .-..+++|||||||.+. ...+..+++.+......+++++-.
T Consensus 59 -------~~~~~~~~~~~~~~~~----~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 59 -------AIPVSSDTDIFELIEE----EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred -------ceEeCChHHHHHHHHh----hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEecC
Confidence 0123444555555443 22467899999998642 233555666543344456665543
No 206
>PRK06921 hypothetical protein; Provisional
Probab=96.72 E-value=0.013 Score=60.00 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=27.6
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q 211 (678)
.+.++++.|++|+|||.. +..+.+.+.... +..|+++ +...+..+
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~~~~----g~~v~y~-~~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELMRKK----GVPVLYF-PFVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHhhhc----CceEEEE-EHHHHHHH
Confidence 357899999999999975 455555554321 2335554 44455443
No 207
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.65 E-value=0.018 Score=52.27 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=18.7
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
++.+++.|++|+|||.. +..+...+
T Consensus 19 ~~~v~i~G~~G~GKT~l-~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL-ARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHh
Confidence 67899999999999964 44444444
No 208
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.65 E-value=0.0037 Score=73.65 Aligned_cols=153 Identities=21% Similarity=0.149 Sum_probs=90.9
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhc------------CCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEE
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLY------------RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~------------~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~ 229 (678)
|+++++...+|+|||..-+.-.+..+-. .......+.+|||+|. ++..||.+.+..-+.. +++|..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~-~lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS-LLKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc-cceEEE
Confidence 5788999999999998754443333211 0111223458999997 5668999888876544 367766
Q ss_pred EecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCcc-------------C----CC--CeeEEEEeCCcccccCChHH
Q 005773 230 VVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSV-------------D----LD--DLAVLILDEADRLLELGFSA 290 (678)
Q Consensus 230 ~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~-------------~----l~--~i~~lVvDEah~ll~~gf~~ 290 (678)
..|-.........-.-.+|||+|||..|...+...... . |- .|=-|+||||..+-. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 66543221111122235899999999998777543111 0 11 111489999996543 233
Q ss_pred HHHHHHHHCCCCccEEEEEeccChhHHHH
Q 005773 291 EIHELVRLCPKRRQTMLFSATLTEDVDEL 319 (678)
Q Consensus 291 ~i~~i~~~~~~~~q~il~SATl~~~~~~l 319 (678)
...+.+..++ ....-.+|+|+-..+.++
T Consensus 530 ~~a~M~~rL~-~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 530 AAAEMVRRLH-AINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHHhh-hhceeeecCCchhhhhhh
Confidence 3344444443 234578899976555544
No 209
>PRK14974 cell division protein FtsY; Provisional
Probab=96.64 E-value=0.032 Score=58.96 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=39.8
Q ss_pred CeeEEEEeCCcccc-cCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHh
Q 005773 271 DLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLS 323 (678)
Q Consensus 271 ~i~~lVvDEah~ll-~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~ 323 (678)
.+++|+||.|.++. +..+...+..+.+...+..-+++++||...+....+..+
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 46799999999886 344667777777777677778899999887766656554
No 210
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.61 E-value=0.0093 Score=68.64 Aligned_cols=136 Identities=19% Similarity=0.131 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCC-EEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHH
Q 005773 131 NLSRPLLRACEALGYSKPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (678)
Q Consensus 131 ~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~d-vl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La 209 (678)
.+.|.+.+. -+..+..-|++|+-.++..+| .++.|-+|+|||++ +..++..|+.. +.+||+.+-|...+
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTt-I~~LIkiL~~~-----gkkVLLtsyThsAV 726 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTT-ISLLIKILVAL-----GKKVLLTSYTHSAV 726 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhh-HHHHHHHHHHc-----CCeEEEEehhhHHH
Confidence 445555443 244688999999999988876 56899999999976 44444444433 45699999998775
Q ss_pred HHHHHHHHHHhhcCCceeEEEec---------------CCChH--HHHHHhcCCCCEEEECchHHHHHHhccCccCCCCe
Q 005773 210 VQVHSMIEKIAQFTDIRCCLVVG---------------GLSTK--MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (678)
Q Consensus 210 ~Q~~~~~~~l~~~~~~~v~~~~g---------------~~~~~--~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i 272 (678)
..+ +.+|..+ ++.+.-+-. +.+.. ..-..+.+.+.||.+|=-.+-.. .|....+
T Consensus 727 DNI---LiKL~~~-~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p-----lf~~R~F 797 (1100)
T KOG1805|consen 727 DNI---LIKLKGF-GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP-----LFVNRQF 797 (1100)
T ss_pred HHH---HHHHhcc-CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch-----hhhcccc
Confidence 544 4444322 222111111 11111 11122345578998886555433 3345578
Q ss_pred eEEEEeCCccccc
Q 005773 273 AVLILDEADRLLE 285 (678)
Q Consensus 273 ~~lVvDEah~ll~ 285 (678)
+++|||||-.++.
T Consensus 798 D~cIiDEASQI~l 810 (1100)
T KOG1805|consen 798 DYCIIDEASQILL 810 (1100)
T ss_pred CEEEEcccccccc
Confidence 9999999998753
No 211
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.60 E-value=0.0072 Score=60.70 Aligned_cols=89 Identities=21% Similarity=0.284 Sum_probs=63.2
Q ss_pred CCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCC-ChHHHHHHhcC-CCCEEEECchHHHHHHhccCccCC
Q 005773 192 KRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGL-STKMQETALRS-MPDIVVATPGRMIDHLRNSMSVDL 269 (678)
Q Consensus 192 ~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~-~~~~~~~~l~~-~~dIiv~Tp~~L~~~l~~~~~~~l 269 (678)
.....|.+|||+..-.-|..+.+.+..|.. .+..|+-++.-. ...++...+.. ..+|.|+||+||..++.+. .+.+
T Consensus 122 ~~~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~-~L~l 199 (252)
T PF14617_consen 122 KEKGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENG-ALSL 199 (252)
T ss_pred cCCCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcC-CCCc
Confidence 334577899999885556566655555421 123444444433 56667666764 6899999999999999775 7889
Q ss_pred CCeeEEEEeCCcc
Q 005773 270 DDLAVLILDEADR 282 (678)
Q Consensus 270 ~~i~~lVvDEah~ 282 (678)
+++.+||||=-|.
T Consensus 200 ~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 200 SNLKRIVLDWSYL 212 (252)
T ss_pred ccCeEEEEcCCcc
Confidence 9999999998774
No 212
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.013 Score=62.67 Aligned_cols=131 Identities=21% Similarity=0.206 Sum_probs=64.7
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (678)
|..+++.||||+|||++. ..+...+..... ..+|.++. +-..-.--.+.+..++...++.+..
T Consensus 137 g~ii~lvGptGvGKTTti-akLA~~~~~~~G---~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~------------ 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT-AKLAARCVMRFG---ASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHA------------ 199 (374)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHHhcC---CCeEEEEe-cccccccHHHHHHHHHHHcCCceEe------------
Confidence 567889999999999863 333333222111 12343333 2222111223444444444443332
Q ss_pred HhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCC-hHHHHHHHHHHCCCCccEEEEEeccChhH-HHH
Q 005773 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLTEDV-DEL 319 (678)
Q Consensus 242 ~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g-f~~~i~~i~~~~~~~~q~il~SATl~~~~-~~l 319 (678)
+.+++.+...+.. +.+.++|+||.+-+..... ....+..+.........++++|||...+. .+.
T Consensus 200 ---------~~~~~~l~~~l~~-----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 200 ---------VKDGGDLQLALAE-----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred ---------cCCcccHHHHHHH-----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH
Confidence 3344444443432 2355789999997653211 22333333222222344788899986554 344
Q ss_pred HHHh
Q 005773 320 IKLS 323 (678)
Q Consensus 320 ~~~~ 323 (678)
++.+
T Consensus 266 i~~f 269 (374)
T PRK14722 266 VQAY 269 (374)
T ss_pred HHHH
Confidence 4444
No 213
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.53 E-value=0.028 Score=67.71 Aligned_cols=138 Identities=17% Similarity=0.097 Sum_probs=81.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHH
Q 005773 131 NLSRPLLRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (678)
Q Consensus 131 ~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~-g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La 209 (678)
++++..+.+....++ .+++-|..++..+.. ++-+++.|+.|+|||++ +-++...+-. .+.+|+.++||-..|
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~-----~G~~V~g~ApTgkAA 438 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA-----AGYRVVGGALAGKAA 438 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH-----cCCeEEEEcCcHHHH
Confidence 455555555544444 499999999998865 45577999999999975 4444444322 245789999998776
Q ss_pred HHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChH
Q 005773 210 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289 (678)
Q Consensus 210 ~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~ 289 (678)
..+.+ ..++....+. .++..... ....+..-.+||||||..+...
T Consensus 439 ~~L~e-------~~Gi~a~TIa------------------------s~ll~~~~-~~~~l~~~~vlVIDEAsMv~~~--- 483 (1102)
T PRK13826 439 EGLEK-------EAGIQSRTLS------------------------SWELRWNQ-GRDQLDNKTVFVLDEAGMVASR--- 483 (1102)
T ss_pred HHHHH-------hhCCCeeeHH------------------------HHHhhhcc-CccCCCCCcEEEEECcccCCHH---
Confidence 54432 2233322211 11000001 1123455679999999966432
Q ss_pred HHHHHHHHHCC-CCccEEEEEec
Q 005773 290 AEIHELVRLCP-KRRQTMLFSAT 311 (678)
Q Consensus 290 ~~i~~i~~~~~-~~~q~il~SAT 311 (678)
.+..++...+ ...++|++.=+
T Consensus 484 -~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 484 -QMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred -HHHHHHHHHHhcCCEEEEECCH
Confidence 2334455443 45666666544
No 214
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.50 E-value=0.0055 Score=55.23 Aligned_cols=42 Identities=26% Similarity=0.117 Sum_probs=26.0
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La 209 (678)
+..+++.||+|+|||.. +..++..+.... ..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl-~~~l~~~~~~~~-----~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTL-ARALARELGPPG-----GGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHH-HHHHHhccCCCC-----CCEEEECCEEccc
Confidence 46789999999999986 333333321111 2467777776543
No 215
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.48 E-value=0.037 Score=60.59 Aligned_cols=128 Identities=23% Similarity=0.286 Sum_probs=65.5
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHh-cCCCCCCCeEEEEE-cCc-HHHHHHHHHHHHHHhhcCCceeEEEecCCChHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLL-YRPKRIPAIRVLIL-TPT-RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~-~~~~~~~~~~vLIl-~Pt-r~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~ 238 (678)
++.+++.||||+|||++. .-+...+. ... +.+|.+| +-+ |.-+. +.+..++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~-~kLA~~~~~~~~----g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~---------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTL-AKLAARYALLYG----KKKVALITLDTYRIGAV---EQLKTYAKIMGIPVE---------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHHhcC----CCeEEEEECCccHHHHH---HHHHHHHHHhCCceE----------
Confidence 456789999999999763 33322332 111 1233333 332 33222 334443333343322
Q ss_pred HHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc-cCChHHHHHHHHHHC-CCCccEEEEEeccChh-
Q 005773 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLC-PKRRQTMLFSATLTED- 315 (678)
Q Consensus 239 ~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~i~~~~-~~~~q~il~SATl~~~- 315 (678)
++.++..+...+.. +...++||||-+-+.. +......+..++... ....-.+++|||....
T Consensus 283 -----------~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~ 346 (424)
T PRK05703 283 -----------VVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYED 346 (424)
T ss_pred -----------ccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHH
Confidence 22344445555543 2357899999987643 222334555565522 2234478899998754
Q ss_pred HHHHHHHh
Q 005773 316 VDELIKLS 323 (678)
Q Consensus 316 ~~~l~~~~ 323 (678)
+...+..+
T Consensus 347 l~~~~~~f 354 (424)
T PRK05703 347 LKDIYKHF 354 (424)
T ss_pred HHHHHHHh
Confidence 44444433
No 216
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.44 E-value=0.056 Score=57.53 Aligned_cols=134 Identities=25% Similarity=0.278 Sum_probs=75.9
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~ 240 (678)
.++.+.+.||||-|||++ + +=|.+.+....+ ...-.||.+-|--.+ .+++++.++.-.++.+.
T Consensus 202 ~~~vi~LVGPTGVGKTTT-l-AKLAar~~~~~~-~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~------------ 264 (407)
T COG1419 202 QKRVIALVGPTGVGKTTT-L-AKLAARYVMLKK-KKKVAIITTDTYRIG--AVEQLKTYADIMGVPLE------------ 264 (407)
T ss_pred cCcEEEEECCCCCcHHHH-H-HHHHHHHHhhcc-CcceEEEEeccchhh--HHHHHHHHHHHhCCceE------------
Confidence 377888999999999986 2 222222221111 122345655553332 23456666655566554
Q ss_pred HHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc-cCChHHHHHHHHHHCCCCccEEEEEeccC-hhHHH
Q 005773 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLT-EDVDE 318 (678)
Q Consensus 241 ~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~i~~~~~~~~q~il~SATl~-~~~~~ 318 (678)
++-+|.-|...+.. +.+.++|.||=+-+-. +.-....+..+++..+..--.+.+|||.. .++.+
T Consensus 265 ---------vv~~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 265 ---------VVYSPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred ---------EecCHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 34556666555544 3455778888776532 22244566666666644455688899886 44555
Q ss_pred HHHHhcC
Q 005773 319 LIKLSLT 325 (678)
Q Consensus 319 l~~~~~~ 325 (678)
.+..+-.
T Consensus 331 i~~~f~~ 337 (407)
T COG1419 331 IIKQFSL 337 (407)
T ss_pred HHHHhcc
Confidence 5555433
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.40 E-value=0.041 Score=53.63 Aligned_cols=129 Identities=18% Similarity=0.146 Sum_probs=68.8
Q ss_pred EEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcC-cHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh
Q 005773 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP-TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (678)
Q Consensus 165 vl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~P-tr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l 243 (678)
+++.||||+|||++ +.-+..++.... ..-.||-+- .|.-+ .++++.++...++.+.......++..
T Consensus 4 i~lvGptGvGKTTt-~aKLAa~~~~~~----~~v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~~~~~~~~----- 70 (196)
T PF00448_consen 4 IALVGPTGVGKTTT-IAKLAARLKLKG----KKVALISADTYRIGA---VEQLKTYAEILGVPFYVARTESDPAE----- 70 (196)
T ss_dssp EEEEESTTSSHHHH-HHHHHHHHHHTT------EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESSTTSCHHH-----
T ss_pred EEEECCCCCchHhH-HHHHHHHHhhcc----ccceeecCCCCCccH---HHHHHHHHHHhccccchhhcchhhHH-----
Confidence 57899999999987 333333333331 112333333 34333 33455555555666544332221111
Q ss_pred cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc-cCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHH
Q 005773 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (678)
Q Consensus 244 ~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~ 321 (678)
.+...+.. ....++++|+||=+.+.. +......+..+++......-.+.+|||...+....+.
T Consensus 71 ------------~~~~~l~~---~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 71 ------------IAREALEK---FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp ------------HHHHHHHH---HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred ------------HHHHHHHH---HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 11122221 112356789999887654 2234566677777776666678999999876554443
No 218
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.34 E-value=0.039 Score=55.61 Aligned_cols=109 Identities=19% Similarity=0.329 Sum_probs=59.0
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHH
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (678)
..+++.|++|+|||.. +..+.+.+... +..|+++ +...|...+...+.. ..
T Consensus 100 ~~~~l~G~~GtGKThL-a~aia~~l~~~-----g~~v~~i-t~~~l~~~l~~~~~~-------------~~--------- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHL-AAAICNELLLR-----GKSVLII-TVADIMSAMKDTFSN-------------SE--------- 150 (244)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHhc-----CCeEEEE-EHHHHHHHHHHHHhh-------------cc---------
Confidence 4688999999999975 45555565443 2345554 444443322221100 00
Q ss_pred hcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHH-HHHHHHHHCCC-CccEEEEEeccChhHH
Q 005773 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA-EIHELVRLCPK-RRQTMLFSATLTEDVD 317 (678)
Q Consensus 243 l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~-~i~~i~~~~~~-~~q~il~SATl~~~~~ 317 (678)
.+...+++. +.++++|||||.+......+.. .+..|++.... ...+|+.|---+.++.
T Consensus 151 ---------~~~~~~l~~--------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 151 ---------TSEEQLLND--------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred ---------ccHHHHHHH--------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 122233332 3357799999999876443443 45556655433 4556666655444443
No 219
>PRK08116 hypothetical protein; Validated
Probab=96.31 E-value=0.047 Score=56.06 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=57.6
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l 243 (678)
.+++.|++|+|||.. +..+.+.+.... ..+++ ++...+...+...+.. . ..
T Consensus 116 gl~l~G~~GtGKThL-a~aia~~l~~~~-----~~v~~-~~~~~ll~~i~~~~~~--------------~-~~------- 166 (268)
T PRK08116 116 GLLLWGSVGTGKTYL-AACIANELIEKG-----VPVIF-VNFPQLLNRIKSTYKS--------------S-GK------- 166 (268)
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHHHcC-----CeEEE-EEHHHHHHHHHHHHhc--------------c-cc-------
Confidence 488999999999976 455666665431 23444 4445554443332211 0 00
Q ss_pred cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc--cccCChHHHHHHHHHHCC-CCccEEEEEeccChhHH
Q 005773 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR--LLELGFSAEIHELVRLCP-KRRQTMLFSATLTEDVD 317 (678)
Q Consensus 244 ~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~--ll~~gf~~~i~~i~~~~~-~~~q~il~SATl~~~~~ 317 (678)
.+...++..+ .+.++||||+.+. ..+| ....+..+++... ...++|+.|-..+.++.
T Consensus 167 --------~~~~~~~~~l--------~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 167 --------EDENEIIRSL--------VNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred --------ccHHHHHHHh--------cCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 0111222222 3456899999964 3344 3445666666543 33456666655544443
No 220
>PRK08727 hypothetical protein; Validated
Probab=96.24 E-value=0.022 Score=57.32 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=24.7
Q ss_pred CeeEEEEeCCcccccCC-hHHHHHHHHHHCCCCccEEEEEeccC
Q 005773 271 DLAVLILDEADRLLELG-FSAEIHELVRLCPKRRQTMLFSATLT 313 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~g-f~~~i~~i~~~~~~~~q~il~SATl~ 313 (678)
+..+|||||+|.+..+. ....+..+++........+++|+..+
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~ 136 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQM 136 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 44689999999887543 33445556555433232355555443
No 221
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.21 E-value=0.092 Score=58.71 Aligned_cols=107 Identities=13% Similarity=0.192 Sum_probs=71.6
Q ss_pred ccCCceEEEEeccHHHHHHHHHHHhhcCC-------ceeeccCCCCHHHHHHHHHHHh----cCCccEEEEc--cccccc
Q 005773 367 KTFTSKVIIFSGTKQAAHRLKILFGLAAL-------KAAELHGNLTQAQRLEALELFR----KQHVDFLIAT--DVAARG 433 (678)
Q Consensus 367 ~~~~~~vLVF~~s~~~~~~l~~~L~~~~~-------~~~~lhg~l~~~~R~~~l~~F~----~g~~~vLvaT--~~~~~G 433 (678)
...+++|++|+||+.-...+...+...|+ +...+-..-+ -..++..+. .|.-.+|+|. .-+++|
T Consensus 626 ~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEG 702 (821)
T KOG1133|consen 626 NAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEG 702 (821)
T ss_pred hhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccc
Confidence 34458999999999999999988876653 2222222222 234555554 3554566654 567899
Q ss_pred CCCCC--ccEEEEcCCCCC-h-----------------------h--------HHHHHHhhcccCCCceEEEEEeeC
Q 005773 434 LDIIG--VQTVINYACPRD-L-----------------------T--------SYVHRVGRTARAGREGYAVTFVTD 476 (678)
Q Consensus 434 lDi~~--v~~VI~~d~p~s-~-----------------------~--------~yiQr~GRagR~g~~G~~i~l~~~ 476 (678)
||+.+ ++.||..++|.. + . ..-|.+|||-|.-+.--+|+|++.
T Consensus 703 INF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 703 INFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred cccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 99977 889999998862 0 1 123899999997666566666554
No 222
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.17 E-value=0.05 Score=57.42 Aligned_cols=44 Identities=25% Similarity=0.212 Sum_probs=28.1
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~ 212 (678)
+.++++.|+||+|||.. +..+.+.++.. +..|++ .+...|..++
T Consensus 183 ~~~Lll~G~~GtGKThL-a~aIa~~l~~~-----g~~V~y-~t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFL-SNCIAKELLDR-----GKSVIY-RTADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHH-HHHHHHHHHHC-----CCeEEE-EEHHHHHHHH
Confidence 57899999999999975 44555555433 223444 4555564443
No 223
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.16 E-value=0.015 Score=60.34 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=47.8
Q ss_pred HcCCCCCcHHHHHHHHHHhcCC--CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHH
Q 005773 142 ALGYSKPTPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (678)
Q Consensus 142 ~~g~~~~~~iQ~~~i~~ll~g~--dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~L 208 (678)
-+|+....-.|.-|+.+++.-. =|.+.|+.|||||+.++.+.++..+.+.. -.+++|.=|+..+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~---y~KiiVtRp~vpv 288 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR---YRKIIVTRPTVPV 288 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh---hceEEEecCCcCc
Confidence 4588877788888888888753 35589999999999888888888776543 2357777777554
No 224
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.042 Score=58.57 Aligned_cols=128 Identities=18% Similarity=0.144 Sum_probs=66.5
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEE-Ec-CcHH-HHHHHHHHHHHHhhcCCceeEEEecCCChHHH
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI-LT-PTRE-LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLI-l~-Ptr~-La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~ 239 (678)
+.+++.||||+|||++. ..+...+... +.++.+ -+ |.|. .+.|+. .++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTi-aKLA~~L~~~-----GkkVglI~aDt~RiaAvEQLk----~yae~lgipv------------ 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL-AKMAWQFHGK-----KKTVGFITTDHSRIGTVQQLQ----DYVKTIGFEV------------ 299 (436)
T ss_pred cEEEEECCCCCcHHHHH-HHHHHHHHHc-----CCcEEEEecCCcchHHHHHHH----HHhhhcCCcE------------
Confidence 46779999999999863 3332333222 223443 33 3332 333433 2322223322
Q ss_pred HHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccC-ChHHHHHHHHHHCCCCccEEEEEeccCh-hHH
Q 005773 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTE-DVD 317 (678)
Q Consensus 240 ~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~-gf~~~i~~i~~~~~~~~q~il~SATl~~-~~~ 317 (678)
+++.+|..|.+.+.... .-.++++|+||-+-+.... .....+..++....+..-++.+|||... ++.
T Consensus 300 ---------~v~~d~~~L~~aL~~lk--~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~ 368 (436)
T PRK11889 300 ---------IAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI 368 (436)
T ss_pred ---------EecCCHHHHHHHHHHHH--hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHH
Confidence 22335666666554321 0124679999999875532 2334445555544434445678987664 555
Q ss_pred HHHHHh
Q 005773 318 ELIKLS 323 (678)
Q Consensus 318 ~l~~~~ 323 (678)
..+..+
T Consensus 369 ~i~~~F 374 (436)
T PRK11889 369 EIITNF 374 (436)
T ss_pred HHHHHh
Confidence 555554
No 225
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.14 E-value=0.022 Score=61.40 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHH------hcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 005773 148 PTPIQAACIPLA------LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (678)
Q Consensus 148 ~~~iQ~~~i~~l------l~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~ 212 (678)
+++-|+.++..+ ..+..+++.|+-|+|||.. +-.+...+.. .+..+++++||-..|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~----~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS----RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc----ccceEEEecchHHHHHhc
Confidence 677888888887 5678899999999999974 5555444433 245799999998877654
No 226
>PRK12377 putative replication protein; Provisional
Probab=96.07 E-value=0.045 Score=55.32 Aligned_cols=106 Identities=18% Similarity=0.237 Sum_probs=58.0
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (678)
..++++.|++|+|||.. +..+.+.+.... ..| +.++..+|..++...+.. +.
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~~g-----~~v-~~i~~~~l~~~l~~~~~~--------------~~------- 152 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLAKG-----RSV-IVVTVPDVMSRLHESYDN--------------GQ------- 152 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHcC-----CCe-EEEEHHHHHHHHHHHHhc--------------cc-------
Confidence 35789999999999975 455555655322 223 444555665544332210 00
Q ss_pred HhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc--cCChHHHHHHHHHHCCC-CccEEEEEeccChh
Q 005773 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL--ELGFSAEIHELVRLCPK-RRQTMLFSATLTED 315 (678)
Q Consensus 242 ~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll--~~gf~~~i~~i~~~~~~-~~q~il~SATl~~~ 315 (678)
+...++.. +.+.++|||||.+... .| -...+..+++.... ...+|+.|---..+
T Consensus 153 -----------~~~~~l~~--------l~~~dLLiIDDlg~~~~s~~-~~~~l~~ii~~R~~~~~ptiitSNl~~~~ 209 (248)
T PRK12377 153 -----------SGEKFLQE--------LCKVDLLVLDEIGIQRETKN-EQVVLNQIIDRRTASMRSVGMLTNLNHEA 209 (248)
T ss_pred -----------hHHHHHHH--------hcCCCEEEEcCCCCCCCCHH-HHHHHHHHHHHHHhcCCCEEEEcCCCHHH
Confidence 01112221 3467799999996543 33 34455666665543 35566665543333
No 227
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.97 E-value=0.013 Score=59.36 Aligned_cols=51 Identities=20% Similarity=0.170 Sum_probs=34.0
Q ss_pred cccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCC
Q 005773 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRP 191 (678)
Q Consensus 122 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~ 191 (678)
....+|++|++++-+.+.+.. ...=++|.||||||||++ +..++.++....
T Consensus 103 ~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 103 SKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred ccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 345567777776655442211 122377999999999987 778888887654
No 228
>PHA02533 17 large terminase protein; Provisional
Probab=95.92 E-value=0.059 Score=60.71 Aligned_cols=148 Identities=14% Similarity=0.104 Sum_probs=84.7
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC--
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD-- 224 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~-- 224 (678)
.|.|+|...+..+..++-.++..+=..|||.+....++...+.. ++..+++++|++.-|..+++.++.+....+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~----~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l 134 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN----KDKNVGILAHKASMAAEVLDRTKQAIELLPDF 134 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHH
Confidence 48899999998876677677888889999987654444444332 244899999999999888877776544321
Q ss_pred ceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCC--C
Q 005773 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK--R 302 (678)
Q Consensus 225 ~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~--~ 302 (678)
........ ....-.+.+++.|.+.|-.. ....-.+..++|+||+|.+.+ +...+..+...+.. .
T Consensus 135 ~~~~i~~~----~~~~I~l~NGS~I~~lss~~--------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~ 200 (534)
T PHA02533 135 LQPGIVEW----NKGSIELENGSKIGAYASSP--------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRS 200 (534)
T ss_pred hhcceeec----CccEEEeCCCCEEEEEeCCC--------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCC
Confidence 11111000 00111124455554444211 011122566899999997654 33333333333332 2
Q ss_pred ccEEEEEecc
Q 005773 303 RQTMLFSATL 312 (678)
Q Consensus 303 ~q~il~SATl 312 (678)
.+++++|.+.
T Consensus 201 ~r~iiiSTp~ 210 (534)
T PHA02533 201 SKIIITSTPN 210 (534)
T ss_pred ceEEEEECCC
Confidence 3455555553
No 229
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.89 E-value=0.023 Score=65.92 Aligned_cols=71 Identities=25% Similarity=0.229 Sum_probs=53.2
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 145 ~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
-..+++-|..++-. ...+++|.|..|||||.+ ++.-+..++... ...+.++|+|+.|+.+|..+.+.+...
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~v-l~~r~ayLl~~~-~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSV-LVARAGWLLARG-QAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHH-HHHHHHHHHHhC-CCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 34699999999853 345688999999999987 455555555432 234568999999999999888887764
No 230
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.89 E-value=0.013 Score=68.38 Aligned_cols=71 Identities=18% Similarity=0.137 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
.+++-|.+++.. ....++|.|..|||||.+ ++.-+.+++... +.++.++|+|+.|+..|..+.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~v-L~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRV-ITNKIAHLIRGC-GYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhc-CCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478999999875 356788999999999987 455555555432 23456899999999999999988887643
No 231
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.88 E-value=0.0083 Score=57.01 Aligned_cols=125 Identities=21% Similarity=0.210 Sum_probs=54.5
Q ss_pred EEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcC
Q 005773 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRS 245 (678)
Q Consensus 166 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~ 245 (678)
++.|+-|-|||.+.-+.+...+... ..+++|.+|+.+-+..+++.+..-....+++....... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~-----~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~ 72 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG-----KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLRFN 72 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS----------EEEE-SS--S-HHHHHCC-----------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc-----CceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccccccc
Confidence 5788999999987555544332111 24699999999988877776655333333222000000 000001112
Q ss_pred CCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccCh
Q 005773 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314 (678)
Q Consensus 246 ~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~ 314 (678)
...|-+..|..+...- ...++||||||=.+- ...+..++... ..++||.|..-
T Consensus 73 ~~~i~f~~Pd~l~~~~--------~~~DlliVDEAAaIp----~p~L~~ll~~~----~~vv~stTi~G 125 (177)
T PF05127_consen 73 KQRIEFVAPDELLAEK--------PQADLLIVDEAAAIP----LPLLKQLLRRF----PRVVFSTTIHG 125 (177)
T ss_dssp CCC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEBSS
T ss_pred cceEEEECCHHHHhCc--------CCCCEEEEechhcCC----HHHHHHHHhhC----CEEEEEeeccc
Confidence 4567777777764321 134789999999763 34445554333 35788888763
No 232
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.81 E-value=0.036 Score=55.20 Aligned_cols=41 Identities=10% Similarity=0.231 Sum_probs=24.1
Q ss_pred eEEEEeCCcccccC-ChHHHHHHHHHHCCCCccEEEEEeccC
Q 005773 273 AVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLT 313 (678)
Q Consensus 273 ~~lVvDEah~ll~~-gf~~~i~~i~~~~~~~~q~il~SATl~ 313 (678)
.+|||||+|.+... .....+..+++........+++|++.+
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 58999999987643 234555555554322223456666644
No 233
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.79 E-value=0.095 Score=48.72 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=26.5
Q ss_pred CCeeEEEEeCCcccccCC----------hHHHHHHHHHHCCCCccEEEEEeccC
Q 005773 270 DDLAVLILDEADRLLELG----------FSAEIHELVRLCPKRRQTMLFSATLT 313 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~g----------f~~~i~~i~~~~~~~~q~il~SATl~ 313 (678)
....++||||.+.+.... ....+..+........-+++++...+
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 137 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVP 137 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 467799999999875432 23445555555544444555555544
No 234
>PRK06893 DNA replication initiation factor; Validated
Probab=95.75 E-value=0.032 Score=55.90 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=29.9
Q ss_pred CeeEEEEeCCcccccC-ChHHHHHHHHHHCCC-CccEEEEEeccChh
Q 005773 271 DLAVLILDEADRLLEL-GFSAEIHELVRLCPK-RRQTMLFSATLTED 315 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~-gf~~~i~~i~~~~~~-~~q~il~SATl~~~ 315 (678)
+.++|||||+|.+... .+...+..+++.... ..+++++|++.++.
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 5679999999988632 244456666665543 34567888877654
No 235
>PRK05642 DNA replication initiation factor; Validated
Probab=95.72 E-value=0.045 Score=55.07 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=30.4
Q ss_pred CeeEEEEeCCcccccC-ChHHHHHHHHHHCCCCccEEEEEeccCh
Q 005773 271 DLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTE 314 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~-gf~~~i~~i~~~~~~~~q~il~SATl~~ 314 (678)
++++||||+.|.+... .....+..+++.+......++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4468999999987543 3456678888776654455777777654
No 236
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.043 Score=55.83 Aligned_cols=50 Identities=20% Similarity=0.322 Sum_probs=34.5
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 217 (678)
.+.++++.|++|+|||.. +.++.+.+... +. -++++++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThL-a~Ai~~~l~~~-----g~-sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHL-AIAIGNELLKA-----GI-SVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHHc-----CC-eEEEEEHHHHHHHHHHHHh
Confidence 678999999999999986 45556666532 22 2555677788776655433
No 237
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.65 E-value=0.087 Score=60.56 Aligned_cols=144 Identities=18% Similarity=0.230 Sum_probs=83.4
Q ss_pred CCCCcHHHHHHHHHHhcCC--CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 145 YSKPTPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 145 ~~~~~~iQ~~~i~~ll~g~--dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
.+.+..-|.+.+..++..+ -+++.|.-|=|||.+.-|.+....... . ..+++|.+|+.+-+..+.+.+.+-..+
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~-~---~~~iiVTAP~~~nv~~Lf~fa~~~l~~ 287 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA-G---SVRIIVTAPTPANVQTLFEFAGKGLEF 287 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc-C---CceEEEeCCCHHHHHHHHHHHHHhHHH
Confidence 3334344444555556543 577999999999987666553222111 1 457999999999988888877765555
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCC
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~ 302 (678)
.|..-.+.......... .-.....|=+-+|.... ..-++||||||=.| ..+.+..++...
T Consensus 288 lg~~~~v~~d~~g~~~~--~~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaI----plplL~~l~~~~--- 347 (758)
T COG1444 288 LGYKRKVAPDALGEIRE--VSGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAI----PLPLLHKLLRRF--- 347 (758)
T ss_pred hCCccccccccccceee--ecCCceeEEeeCcchhc-----------ccCCEEEEehhhcC----ChHHHHHHHhhc---
Confidence 55432222111000000 00011224455554432 11458999999876 445556665554
Q ss_pred ccEEEEEeccC
Q 005773 303 RQTMLFSATLT 313 (678)
Q Consensus 303 ~q~il~SATl~ 313 (678)
+.++||.|+.
T Consensus 348 -~rv~~sTTIh 357 (758)
T COG1444 348 -PRVLFSTTIH 357 (758)
T ss_pred -CceEEEeeec
Confidence 3589999986
No 238
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.57 E-value=0.033 Score=56.62 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=32.8
Q ss_pred cCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccC
Q 005773 267 VDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (678)
Q Consensus 267 ~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~ 313 (678)
.....++++|+||||.|... -...+...+...++...+++.+..++
T Consensus 125 ~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChh
Confidence 44567789999999998643 34556666777777777777776654
No 239
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.44 E-value=0.022 Score=67.09 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=56.0
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 146 ~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
..|++-|.+++.. ....++|.|..|||||.+ +..-+.+|+... +.++.++|+|+.|+..|..+.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-L~~Ria~Li~~~-~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRV-LTHRIAWLLSVE-NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHcC-CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4589999999864 356899999999999987 455555555432 24566899999999999999998888754
No 240
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.41 E-value=0.05 Score=59.99 Aligned_cols=86 Identities=26% Similarity=0.283 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCCCCc----HHHHHHHHHHhc--CCCEEEEcCCCchhhhhhhhchhHHHhcCC-CCCCCeEEEEEcCcH
Q 005773 134 RPLLRACEALGYSKPT----PIQAACIPLALT--GRDICGSAITGSGKTAAFALPTLERLLYRP-KRIPAIRVLILTPTR 206 (678)
Q Consensus 134 ~~l~~~l~~~g~~~~~----~iQ~~~i~~ll~--g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~vLIl~Ptr 206 (678)
.-|+.+|.+.--..++ -||.+-=..|.. ++-++++|..|||||.+ .|+=+..|+++. +...+..|||+.|++
T Consensus 192 EvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTti-ALHRvAyLlY~~R~~l~~k~vlvl~PN~ 270 (747)
T COG3973 192 EVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTI-ALHRVAYLLYGYRGPLQAKPVLVLGPNR 270 (747)
T ss_pred HHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhH-HHHHHHHHHhccccccccCceEEEcCcH
Confidence 3456666665444443 244444444444 45577999999999987 455555555443 333445599999999
Q ss_pred HHHHHHHHHHHHHh
Q 005773 207 ELAVQVHSMIEKIA 220 (678)
Q Consensus 207 ~La~Q~~~~~~~l~ 220 (678)
.+..-+.+++-.|+
T Consensus 271 vFleYis~VLPeLG 284 (747)
T COG3973 271 VFLEYISRVLPELG 284 (747)
T ss_pred HHHHHHHHhchhhc
Confidence 99988888877764
No 241
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.33 E-value=0.06 Score=54.16 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=25.7
Q ss_pred eeEEEEeCCccccc-CChHHHHHHHHHHCCC-CccEEEEEeccCh
Q 005773 272 LAVLILDEADRLLE-LGFSAEIHELVRLCPK-RRQTMLFSATLTE 314 (678)
Q Consensus 272 i~~lVvDEah~ll~-~gf~~~i~~i~~~~~~-~~q~il~SATl~~ 314 (678)
+.+|||||+|.+.. ......+..+++.+.. ....+++|++.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 45899999998863 2345556666665433 2224555665543
No 242
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.28 E-value=0.031 Score=65.38 Aligned_cols=70 Identities=20% Similarity=0.130 Sum_probs=53.5
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 148 ~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
+++-|.+++.. ...+++|.|..|||||.+ ++.-+.+++... ...+.++|+|+.|+..|.++.+.+..+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~-L~~ri~~ll~~~-~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRV-ITNKIAYLIQNC-GYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhc-CCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 78899998864 456899999999999987 555555555432 23456799999999999999988877653
No 243
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.20 E-value=0.25 Score=46.52 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=30.8
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccC
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~ 313 (678)
..++++|||+||.|... -.+.+.++++..|....+|++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 57899999999997643 55677788888777776666665543
No 244
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.17 E-value=0.035 Score=65.48 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=55.4
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 146 ~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
..+++-|.+++.. ....++|.|..|||||.+ +..-+.+|+... +.++.++|+|+-|+..|..+.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~v-l~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRV-LVHRIAWLMQVE-NASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHcC-CCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999864 346789999999999987 444455555432 24466799999999999999998888754
No 245
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.15 E-value=0.076 Score=59.41 Aligned_cols=150 Identities=16% Similarity=0.114 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhc-----C----CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 005773 150 PIQAACIPLALT-----G----RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (678)
Q Consensus 150 ~iQ~~~i~~ll~-----g----~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 220 (678)
|+|+-++-.++. | +.+++.-+=|.|||......++..++..+ ..+..++++++++.-|..+++.+..+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g--~~~~~i~~~A~~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG--EPGAEIYCAANTRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC--ccCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 578877777763 2 35788889999999754444444443332 235689999999999999999888876
Q ss_pred hcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhcc-CccCCCCeeEEEEeCCcccccCChHHHHHHHHHHC
Q 005773 221 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS-MSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (678)
Q Consensus 221 ~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~-~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~ 299 (678)
......... ... .. .. ...-.|.....+.++..+... ....-.+..++|+||+|.+-+......+..-....
T Consensus 79 ~~~~~l~~~-~~~-~~---~~--~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r 151 (477)
T PF03354_consen 79 EASPELRKR-KKP-KI---IK--SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGAR 151 (477)
T ss_pred HhChhhccc-hhh-hh---hh--hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccC
Confidence 542211100 000 00 00 001123332223332222221 12222356899999999987644444443333332
Q ss_pred CCCccEEEEE
Q 005773 300 PKRRQTMLFS 309 (678)
Q Consensus 300 ~~~~q~il~S 309 (678)
++++++++|
T Consensus 152 -~~pl~~~IS 160 (477)
T PF03354_consen 152 -PNPLIIIIS 160 (477)
T ss_pred -CCceEEEEe
Confidence 344555443
No 246
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.13 E-value=0.11 Score=57.55 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=57.9
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHH
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (678)
+.+++.|++|+|||.. +..+.+.+.... ++.+++++.+ ..+...+...+..- .
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~~---~~~~v~yv~~-~~f~~~~~~~l~~~----~------------------ 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESNF---SDLKVSYMSG-DEFARKAVDILQKT----H------------------ 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHhC---CCCeEEEEEH-HHHHHHHHHHHHHh----h------------------
Confidence 4588999999999964 344444443321 2345666544 55655544443320 0
Q ss_pred hcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccC-ChHHHHHHHHHHCCCCccEEEEEeccCh
Q 005773 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLTE 314 (678)
Q Consensus 243 l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~-gf~~~i~~i~~~~~~~~q~il~SATl~~ 314 (678)
.+...+... +.+.++|||||+|.+... .....+..+++.+......+++|+..++
T Consensus 195 ---------~~~~~~~~~--------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 195 ---------KEIEQFKNE--------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred ---------hHHHHHHHH--------hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 000111111 235679999999987632 2445666666665433333455544444
No 247
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.12 E-value=0.2 Score=54.98 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=33.1
Q ss_pred eEEEEeCCccccc-CChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHH
Q 005773 273 AVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (678)
Q Consensus 273 ~~lVvDEah~ll~-~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~ 322 (678)
++||||.|-++.. ......+..+.....+..-++.++||...+....+..
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 7899999976542 2244555666666666666788888887665555544
No 248
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.07 E-value=0.038 Score=57.38 Aligned_cols=60 Identities=30% Similarity=0.279 Sum_probs=45.9
Q ss_pred cCCCCCcHHHHHHHHHHhcCC-CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHH
Q 005773 143 LGYSKPTPIQAACIPLALTGR-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~-dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La 209 (678)
..|..+++-|...+..+..++ |++++|.||||||+. +-+|.... ...-+++.+--|.+|-
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~~~i-----~~~eRvItiEDtaELq 213 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALSGFI-----DSDERVITIEDTAELQ 213 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHHhcC-----CCcccEEEEeehhhhc
Confidence 357889999999999998886 999999999999974 33333221 1233789999998883
No 249
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.02 E-value=0.096 Score=58.19 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=27.3
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~ 212 (678)
+.+++.|++|+|||.. +..+.+.+.... ++.+++++ +...+..++
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~~~~~---~~~~v~yi-~~~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYILEKN---PNAKVVYV-TSEKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHhC---CCCeEEEE-EHHHHHHHH
Confidence 4588999999999975 444555554331 23345555 444554443
No 250
>PTZ00293 thymidine kinase; Provisional
Probab=95.00 E-value=0.093 Score=51.33 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=27.1
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr 206 (678)
|+=.++.|||+||||.- +|-.+.+.... +.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTte-LLr~i~~y~~a-----g~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTE-LMRLVKRFTYS-----EKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHH-HHHHHHHHHHc-----CCceEEEEecc
Confidence 44467899999999975 55556555443 33578888864
No 251
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.98 E-value=0.11 Score=64.84 Aligned_cols=64 Identities=25% Similarity=0.201 Sum_probs=45.4
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 005773 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g--~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~ 212 (678)
.+++-|..++..++.+ +-+++.|..|+|||++ +-.++..+..-. ...+..|+.++||-..+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~-l~~i~~~~~~l~-e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQ-FRAVMSAVNMLP-ESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHH-HHHHHHHHHHHh-hccCceEEEEechHHHHHHH
Confidence 6999999999999976 6688999999999976 323333221100 11245688899998887655
No 252
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.98 E-value=0.11 Score=54.61 Aligned_cols=66 Identities=30% Similarity=0.334 Sum_probs=43.7
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHh-cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHH
Q 005773 137 LRACEALGYSKPTPIQAACIPLAL-TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (678)
Q Consensus 137 ~~~l~~~g~~~~~~iQ~~~i~~ll-~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~L 208 (678)
+..+...|+ +++.|...+..+. .+++++++|+||||||.. +-.++..+... .+..+++++-.+.+|
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~---~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ---DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc---CCCceEEEEcCCCcc
Confidence 344444454 5677887777554 567999999999999964 45555544322 123467888888877
No 253
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.91 E-value=0.085 Score=59.81 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=27.2
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEe
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 310 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SA 310 (678)
...++++||||+|.|....+ +.+.+.++.-+....+|+.|-
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeC
Confidence 35688999999999876544 345556666555565555543
No 254
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.87 E-value=0.12 Score=56.63 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=26.1
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~ 210 (678)
+.+++.|++|+|||.. +..+.+.+.... ++.+++++. ...+..
T Consensus 137 n~l~l~G~~G~GKThL-~~ai~~~l~~~~---~~~~v~yi~-~~~~~~ 179 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHL-LHAIGNEILENN---PNAKVVYVS-SEKFTN 179 (405)
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHHHHhC---CCCcEEEEE-HHHHHH
Confidence 4578999999999975 455555554431 233466653 334433
No 255
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.85 E-value=0.14 Score=64.70 Aligned_cols=64 Identities=23% Similarity=0.177 Sum_probs=45.9
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 005773 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g--~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~ 212 (678)
.+++.|..++..++.+ +-+++.|..|+|||++ +-.++..+.... ...+.+|+.++||-..|..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~-~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLP-ESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhh-cccCceEEEECCcHHHHHHH
Confidence 5899999999999986 4577999999999975 334444332111 11245688899998887654
No 256
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.83 E-value=0.25 Score=58.50 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=28.2
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
...++++||||+|.|...+ .+.+.++++..+...-+||.+
T Consensus 118 ~~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 3578899999999987643 445667777766666555554
No 257
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.81 E-value=0.24 Score=57.16 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=25.5
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
..++++||||+|.|....+ +.+.++++..+....+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEE
Confidence 4678999999999876443 44555666655555444444
No 258
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.72 E-value=0.23 Score=64.32 Aligned_cols=135 Identities=18% Similarity=0.197 Sum_probs=79.2
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 005773 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g--~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~ 224 (678)
.+++-|..++..++.. +-.++.|+.|+|||.+ +-.+++.+ .. .+.+|++++||...+.++.+....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~-~~----~G~~V~~lAPTgrAA~~L~e~~g~------ 496 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLA-SE----QGYEIQIITAGSLSAQELRQKIPR------ 496 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHH-Hh----cCCeEEEEeCCHHHHHHHHHHhcc------
Confidence 5899999999999886 4577999999999975 44444433 22 245799999998877665543221
Q ss_pred ceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHC-CCCc
Q 005773 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC-PKRR 303 (678)
Q Consensus 225 ~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~-~~~~ 303 (678)
....+ ......+.. ..-..|..+|+ . ....+..-++||||||-.+... .+..++... +.+.
T Consensus 497 -~A~Ti------~~~l~~l~~--~~~~~tv~~fl---~--~~~~l~~~~vlIVDEAsMl~~~----~~~~Ll~~a~~~ga 558 (1960)
T TIGR02760 497 -LASTF------ITWVKNLFN--DDQDHTVQGLL---D--KSSPFSNKDIFVVDEANKLSNN----ELLKLIDKAEQHNS 558 (1960)
T ss_pred -hhhhH------HHHHHhhcc--cccchhHHHhh---c--ccCCCCCCCEEEEECCCCCCHH----HHHHHHHHHhhcCC
Confidence 10000 000000111 11122323332 1 1233456789999999976542 344555544 4567
Q ss_pred cEEEEEec
Q 005773 304 QTMLFSAT 311 (678)
Q Consensus 304 q~il~SAT 311 (678)
++|++.=+
T Consensus 559 rvVlvGD~ 566 (1960)
T TIGR02760 559 KLILLNDS 566 (1960)
T ss_pred EEEEEcCh
Confidence 88877654
No 259
>PRK09183 transposase/IS protein; Provisional
Probab=94.71 E-value=0.3 Score=49.92 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=17.3
Q ss_pred HhcCCCEEEEcCCCchhhhh
Q 005773 159 ALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 159 ll~g~dvl~~a~TGsGKT~~ 178 (678)
+-.|.++++.||+|+|||..
T Consensus 99 i~~~~~v~l~Gp~GtGKThL 118 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHL 118 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHH
Confidence 44678999999999999975
No 260
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.68 E-value=0.14 Score=56.41 Aligned_cols=47 Identities=11% Similarity=0.215 Sum_probs=28.6
Q ss_pred CeeEEEEeCCcccccCC-hHHHHHHHHHHCC-CCccEEEEEeccChhHH
Q 005773 271 DLAVLILDEADRLLELG-FSAEIHELVRLCP-KRRQTMLFSATLTEDVD 317 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~g-f~~~i~~i~~~~~-~~~q~il~SATl~~~~~ 317 (678)
+.++|||||+|.+.... ....+..+++.+. ...|+|+.|-+.+..+.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 56799999999986532 3455566655442 34555555545555444
No 261
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.68 E-value=0.25 Score=52.01 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=26.2
Q ss_pred CeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
..++|||||+|.+........+..+++..+...++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 456899999999843334556666777766666655544
No 262
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.67 E-value=0.19 Score=53.68 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=27.2
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
...+.++||||||.|... -.+.+.++++..|...-+|++|
T Consensus 139 ~g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 457889999999998643 3345666666655555555554
No 263
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.65 E-value=0.043 Score=49.22 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=12.5
Q ss_pred EEEEcCCCchhhhh
Q 005773 165 ICGSAITGSGKTAA 178 (678)
Q Consensus 165 vl~~a~TGsGKT~~ 178 (678)
+++.||+|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 58999999999975
No 264
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.61 E-value=0.48 Score=53.89 Aligned_cols=153 Identities=12% Similarity=0.135 Sum_probs=82.7
Q ss_pred CCCCCcHHHHHHHHHHhc---CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 005773 144 GYSKPTPIQAACIPLALT---GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (678)
Q Consensus 144 g~~~~~~iQ~~~i~~ll~---g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 220 (678)
+...|+|.=.+-|..++. .+-.++.+|=|-|||.+..+.+. .+... .+.+|+|++|...-+.++++.+..+.
T Consensus 166 np~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f----~Gi~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 166 NPEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISF----LEIDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred CcCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHh----cCCeEEEECCChhhHHHHHHHHHHHH
Confidence 344456665555555554 46788999999999987443433 33221 24579999999999999988887776
Q ss_pred hcCC--------ceeEEEecCCChHHHH--HHhc-CCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChH
Q 005773 221 QFTD--------IRCCLVVGGLSTKMQE--TALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289 (678)
Q Consensus 221 ~~~~--------~~v~~~~g~~~~~~~~--~~l~-~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~ 289 (678)
...+ ..+..+.|+...-... ...+ +.+.|.+.+-. .....-..+++||||||..+-.
T Consensus 241 e~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars--------~~s~RG~~~DLLIVDEAAfI~~---- 308 (752)
T PHA03333 241 HAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS--------PNAARGQNPDLVIVDEAAFVNP---- 308 (752)
T ss_pred HHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc--------CCCcCCCCCCEEEEECcccCCH----
Confidence 5221 1111122221000000 0000 11223332211 0111223568999999998754
Q ss_pred HHHHHHHHHCC-CCccEEEEEeccC
Q 005773 290 AEIHELVRLCP-KRRQTMLFSATLT 313 (678)
Q Consensus 290 ~~i~~i~~~~~-~~~q~il~SATl~ 313 (678)
..+..++-.+. ...+++++|.+.+
T Consensus 309 ~~l~aIlP~l~~~~~k~IiISS~~~ 333 (752)
T PHA03333 309 GALLSVLPLMAVKGTKQIHISSPVD 333 (752)
T ss_pred HHHHHHHHHHccCCCceEEEeCCCC
Confidence 33334444333 4566777777764
No 265
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.59 E-value=0.61 Score=51.89 Aligned_cols=63 Identities=19% Similarity=0.314 Sum_probs=32.5
Q ss_pred chHHHHHHhccCccCCCCeeEEEEeCCcccccC-ChHHHHHHHHHHCCCCccEEEEEeccC-hhHHHHHHH
Q 005773 254 PGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCPKRRQTMLFSATLT-EDVDELIKL 322 (678)
Q Consensus 254 p~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~-gf~~~i~~i~~~~~~~~q~il~SATl~-~~~~~l~~~ 322 (678)
+..|...+.. +.++++||||.+-+.... .....+..+... ....-+++++++.. .++...+..
T Consensus 416 ~~~L~~aL~~-----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl~eii~~ 480 (559)
T PRK12727 416 AESLLDLLER-----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSDLDEVVRR 480 (559)
T ss_pred HHHHHHHHHH-----hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhHHHHHHHH
Confidence 3445555543 235789999999865321 112223333222 23345777888875 344444443
No 266
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.55 E-value=0.093 Score=55.11 Aligned_cols=57 Identities=35% Similarity=0.375 Sum_probs=40.1
Q ss_pred CcHHHHHHHHHHhc-CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHH
Q 005773 148 PTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (678)
Q Consensus 148 ~~~iQ~~~i~~ll~-g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~L 208 (678)
+++.|...+..++. +++++++|+||||||+. +-.++..+...+ +..+++++=.+.+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~---~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA---PEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC---CCceEEEecCCccc
Confidence 66778877766555 56999999999999974 455555553322 23467888878887
No 267
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.53 E-value=0.47 Score=48.60 Aligned_cols=130 Identities=18% Similarity=0.151 Sum_probs=67.8
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEE-cCc-H-HHHHHHHHHHHHHhhcCCceeEEEecCCChH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL-TPT-R-ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl-~Pt-r-~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~ 237 (678)
.+..+++.|++|+|||..+.+-+. .+... +.++.++ +.+ | ..+.|+..... ..++.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~-~l~~~-----~~~v~~i~~D~~ri~~~~ql~~~~~----~~~~~~~--------- 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW-QFHGK-----KKTVGFITTDHSRIGTVQQLQDYVK----TIGFEVI--------- 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH-HHHHc-----CCeEEEEecCCCCHHHHHHHHHHhh----hcCceEE---------
Confidence 346778999999999986443322 22211 1233333 322 2 34444433222 2232221
Q ss_pred HHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccccc-CChHHHHHHHHHHCCCCccEEEEEeccCh-h
Q 005773 238 MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTE-D 315 (678)
Q Consensus 238 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~-~gf~~~i~~i~~~~~~~~q~il~SATl~~-~ 315 (678)
...+|..|...+... .....++++|||-+-+... ......+..++....+..-.+.+|||... +
T Consensus 135 ------------~~~~~~~l~~~l~~l--~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d 200 (270)
T PRK06731 135 ------------AVRDEAAMTRALTYF--KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 200 (270)
T ss_pred ------------ecCCHHHHHHHHHHH--HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH
Confidence 112454554444321 1123578999999987642 22344455555555444446779998764 6
Q ss_pred HHHHHHHh
Q 005773 316 VDELIKLS 323 (678)
Q Consensus 316 ~~~l~~~~ 323 (678)
....+..+
T Consensus 201 ~~~~~~~f 208 (270)
T PRK06731 201 MIEIITNF 208 (270)
T ss_pred HHHHHHHh
Confidence 66666654
No 268
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.52 E-value=0.2 Score=55.31 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=24.3
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcC
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~P 204 (678)
+.+++.|++|+|||.. +..+.+.+.... ++.+++++..
T Consensus 131 n~l~lyG~~G~GKTHL-l~ai~~~l~~~~---~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHL-LQSIGNYVVQNE---PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHH-HHHHHHHHHHhC---CCCeEEEEEH
Confidence 4688999999999975 344555554321 2345666653
No 269
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.49 E-value=0.39 Score=50.13 Aligned_cols=66 Identities=33% Similarity=0.325 Sum_probs=42.2
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHH
Q 005773 137 LRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (678)
Q Consensus 137 ~~~l~~~g~~~~~~iQ~~~i~~ll~-g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~L 208 (678)
+..+...|. +++-|...+..++. +++++++|+||||||+. +-.++..+... .+..+++++-.+.++
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~---~~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN---DPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc---CCCceEEEECCchhh
Confidence 334444443 55666666655544 57999999999999975 44455444321 123468888888887
No 270
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.44 E-value=0.23 Score=52.12 Aligned_cols=144 Identities=20% Similarity=0.192 Sum_probs=71.3
Q ss_pred CCCCcHHHHHHHHHHhc----CC---CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 005773 145 YSKPTPIQAACIPLALT----GR---DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (678)
Q Consensus 145 ~~~~~~iQ~~~i~~ll~----g~---dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 217 (678)
+..+.|+|..++..+.. |+ -+++.||.|+||+.. ...+...++-..... .+ -|+. | ..+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~l-A~~lA~~LlC~~~~~-~~----~c~~---c----~~~~ 68 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAV-ALALAEHVLASGPDP-AA----AQRT---R----QLIA 68 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH-HHHHHHHHhCCCCCC-CC----cchH---H----HHHh
Confidence 45678899888877663 43 488999999999975 444455544322110 00 1111 1 1111
Q ss_pred HHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHH
Q 005773 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297 (678)
Q Consensus 218 ~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~ 297 (678)
. ..++++.+.......... +....|.|-.--.+...+... -.....+++|||+||.|... -.+.+.++++
T Consensus 69 ~-g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~--p~~g~~kV~iI~~ae~m~~~-AaNaLLKtLE 138 (319)
T PRK08769 69 A-GTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALT--PQYGIAQVVIVDPADAINRA-ACNALLKTLE 138 (319)
T ss_pred c-CCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhC--cccCCcEEEEeccHhhhCHH-HHHHHHHHhh
Confidence 1 112232222101100000 000012221111222222221 12357899999999998643 4556667777
Q ss_pred HCCCCccEEEEEec
Q 005773 298 LCPKRRQTMLFSAT 311 (678)
Q Consensus 298 ~~~~~~q~il~SAT 311 (678)
.-|....+|++|..
T Consensus 139 EPp~~~~fiL~~~~ 152 (319)
T PRK08769 139 EPSPGRYLWLISAQ 152 (319)
T ss_pred CCCCCCeEEEEECC
Confidence 77766666666644
No 271
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.42 E-value=0.17 Score=58.94 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=17.9
Q ss_pred CE-EEEcCCCchhhhhhhhchhHHHh
Q 005773 164 DI-CGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 164 dv-l~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
++ +|.|+||+|||++ +..++..|.
T Consensus 782 nvLYIyG~PGTGKTAT-VK~VLrELq 806 (1164)
T PTZ00112 782 QILYISGMPGTGKTAT-VYSVIQLLQ 806 (1164)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHH
Confidence 45 4999999999987 555666554
No 272
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.42 E-value=0.067 Score=51.43 Aligned_cols=146 Identities=12% Similarity=0.084 Sum_probs=78.5
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~ 240 (678)
....+++...+|.|||.+.+--++..+- .+.+|+|+.=.+--. -+.....+....++.... .+......
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g------~G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~--~g~~~~~~- 89 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG------HGKKVGVVQFIKGAW--STGERNLLEFGGGVEFHV--MGTGFTWE- 89 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH------CCCeEEEEEEecCCC--ccCHHHHHhcCCCcEEEE--CCCCCccc-
Confidence 4568899999999999886555555542 345677775433210 011122221212332221 11110000
Q ss_pred HHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChH--HHHHHHHHHCCCCccEEEEEeccChhHHH
Q 005773 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQTMLFSATLTEDVDE 318 (678)
Q Consensus 241 ~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~--~~i~~i~~~~~~~~q~il~SATl~~~~~~ 318 (678)
......-+......+..... .+.-..+++||+||.-..+++|+. ..+..+++..|...-+|+..-.+|+++.+
T Consensus 90 ---~~~~~e~~~~~~~~~~~a~~--~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 90 ---TQDRERDIAAAREGWEEAKR--MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred ---CCCcHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 00000000011111222221 122357899999999999988864 56777788777777777777778888777
Q ss_pred HHHH
Q 005773 319 LIKL 322 (678)
Q Consensus 319 l~~~ 322 (678)
.+..
T Consensus 165 ~ADl 168 (191)
T PRK05986 165 AADL 168 (191)
T ss_pred hCch
Confidence 6654
No 273
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.41 E-value=0.24 Score=47.49 Aligned_cols=48 Identities=29% Similarity=0.148 Sum_probs=29.6
Q ss_pred EEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 165 vl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
+++.|++|+|||.. .+-++...... +.+|++++.. +...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l-~~~~~~~~~~~-----g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTF-ALQFLYAGLAR-----GEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHH-HHHHHHHHHHC-----CCcEEEEECC-CCHHHHHHHHHHc
Confidence 68999999999975 34333333322 3457777653 4556666665554
No 274
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.39 E-value=0.16 Score=57.62 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=29.2
Q ss_pred CeeEEEEeCCcccccCC-hHHHHHHHHHHCCC-CccEEEEEeccChhH
Q 005773 271 DLAVLILDEADRLLELG-FSAEIHELVRLCPK-RRQTMLFSATLTEDV 316 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~g-f~~~i~~i~~~~~~-~~q~il~SATl~~~~ 316 (678)
++++||||+.|.+.... ....++.+++.+.. ..++|+.|-..+..+
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 46799999999886533 34556677766554 456665554444444
No 275
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.25 Score=52.98 Aligned_cols=34 Identities=29% Similarity=0.217 Sum_probs=23.7
Q ss_pred HHHHhcC--CCEEEEcCCCchhhhhhhhchhHHHhcC
Q 005773 156 IPLALTG--RDICGSAITGSGKTAAFALPTLERLLYR 190 (678)
Q Consensus 156 i~~ll~g--~dvl~~a~TGsGKT~~~~l~~l~~l~~~ 190 (678)
.|.+..+ .|+++.|+||+|||.+ .-.++..+...
T Consensus 34 ~~~~~~~~p~n~~iyG~~GTGKT~~-~~~v~~~l~~~ 69 (366)
T COG1474 34 APALRGERPSNIIIYGPTGTGKTAT-VKFVMEELEES 69 (366)
T ss_pred HHHhcCCCCccEEEECCCCCCHhHH-HHHHHHHHHhh
Confidence 3444443 3799999999999987 56666666544
No 276
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.32 E-value=0.18 Score=50.39 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=25.5
Q ss_pred eeEEEEeCCcccccCChHHHHHHHHHHCCCCcc-EEEEEeccCh
Q 005773 272 LAVLILDEADRLLELGFSAEIHELVRLCPKRRQ-TMLFSATLTE 314 (678)
Q Consensus 272 i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q-~il~SATl~~ 314 (678)
.++|||||+|.+..+ -...+..+++....... +++++++.++
T Consensus 91 ~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 91 AELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred CCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 458999999987543 33445555554433333 5777777543
No 277
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.27 E-value=0.15 Score=55.55 Aligned_cols=136 Identities=20% Similarity=0.222 Sum_probs=75.0
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHH-HHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHH
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE-LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~-La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (678)
-.++.|..|||||.+..+-++..++... ++.++||+-|+.. |..-++..+.......++....-...... .-.
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~---~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~---~i~ 76 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK---KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM---EIK 76 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC---CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc---EEE
Confidence 3678999999999888777777776541 2467899999986 55556666665544444321111111100 000
Q ss_pred hcC-CCCEEEECc-hHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCC--CCccEEEEEeccChh
Q 005773 243 LRS-MPDIVVATP-GRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCP--KRRQTMLFSATLTED 315 (678)
Q Consensus 243 l~~-~~dIiv~Tp-~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~--~~~q~il~SATl~~~ 315 (678)
+.. +..|++..- ..-.. +. ....+.++.+|||..+... .+.+++..+. .....+++|.||...
T Consensus 77 ~~~~g~~i~f~g~~d~~~~-ik-----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 77 ILNTGKKFIFKGLNDKPNK-LK-----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred ecCCCeEEEeecccCChhH-hh-----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 112 334555442 11111 11 1234689999999987533 3333333332 222358888888643
No 278
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.25 E-value=0.26 Score=52.55 Aligned_cols=17 Identities=41% Similarity=0.347 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
++-+++.||||+|||++
T Consensus 206 ~~ii~lvGptGvGKTTt 222 (407)
T PRK12726 206 HRIISLIGQTGVGKTTT 222 (407)
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45677999999999976
No 279
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.20 E-value=0.25 Score=56.50 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=27.2
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
....+++||||+|.|.... .+.+.+.+...|....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4578899999999987532 345556666666666566544
No 280
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.16 E-value=0.25 Score=52.43 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=24.5
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEE
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~ 308 (678)
....+|||||+|.+... ....+..++...+....+|+.
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~ 161 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIA 161 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEE
Confidence 45679999999987542 344556666666555555443
No 281
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.16 E-value=0.11 Score=55.99 Aligned_cols=80 Identities=20% Similarity=0.187 Sum_probs=54.2
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHH
Q 005773 135 PLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214 (678)
Q Consensus 135 ~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~ 214 (678)
.++..+++. +..+...|.++.-..-.|+- .+.|-.|||||... +.=+.+|+.. .+.-+++|.+=|+.|+.++..
T Consensus 151 a~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~L-a~Kaa~lh~k---nPd~~I~~Tfftk~L~s~~r~ 224 (660)
T COG3972 151 ALLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELL-AHKAAELHSK---NPDSRIAFTFFTKILASTMRT 224 (660)
T ss_pred HHHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHH-HHHHHHHhcC---CCCceEEEEeehHHHHHHHHH
Confidence 344555443 44566678777655545554 57888999999763 3333333332 345689999999999999999
Q ss_pred HHHHHh
Q 005773 215 MIEKIA 220 (678)
Q Consensus 215 ~~~~l~ 220 (678)
.+.+|+
T Consensus 225 lv~~F~ 230 (660)
T COG3972 225 LVPEFF 230 (660)
T ss_pred HHHHHH
Confidence 888887
No 282
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.16 E-value=0.43 Score=51.97 Aligned_cols=131 Identities=17% Similarity=0.177 Sum_probs=61.7
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (678)
|.-+.+.|+||+|||++...-+-..+.... ...-.+|.+.+--.+ ..+.+..++...++.+...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~---~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v----------- 254 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHG---ADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSI----------- 254 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC---CCeEEEEecCCcchh--HHHHHHHHHHHcCCceecC-----------
Confidence 445779999999999863322211221111 112245556653332 1233444444445444322
Q ss_pred HhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccccc-CChHHHHHHHHHHCCCCccEEEEEeccChh-HHHH
Q 005773 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTED-VDEL 319 (678)
Q Consensus 242 ~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~-~gf~~~i~~i~~~~~~~~q~il~SATl~~~-~~~l 319 (678)
.++.-+...+.. +...++++||.+-+.-. ......+..+....+...-++++|||.... +.+.
T Consensus 255 ----------~~~~dl~~al~~-----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 255 ----------KDIADLQLMLHE-----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred ----------CCHHHHHHHHHH-----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 222223222222 34556788888643321 112233333332223334568899997654 4444
Q ss_pred HHHh
Q 005773 320 IKLS 323 (678)
Q Consensus 320 ~~~~ 323 (678)
+..+
T Consensus 320 ~~~f 323 (420)
T PRK14721 320 ISAY 323 (420)
T ss_pred HHHh
Confidence 4443
No 283
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.14 E-value=0.18 Score=54.91 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=25.9
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchhhhhh
Q 005773 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAF 179 (678)
Q Consensus 148 ~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~ 179 (678)
+.......+..+..++++++.|++|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 44555667777888999999999999999763
No 284
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.14 E-value=0.082 Score=62.50 Aligned_cols=72 Identities=22% Similarity=0.249 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 146 ~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
..++|-|.+++.+ ....++|.|..|||||.+ ++.-+.+++... +..+.++|+++-|+..|..+.+.+..+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-l~~ria~Li~~~-~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRV-LTHRIAHLIAEK-NVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHH-HHHHHHHHHHcC-CCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999874 356799999999999987 444444554332 23456799999999999999888887654
No 285
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.11 E-value=0.29 Score=57.32 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=65.6
Q ss_pred CCceEEEEeccHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc-cccCCCCCccEEE
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTVI 443 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~----~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~-~~GlDi~~v~~VI 443 (678)
.+.+++|.+||+..+.+.+..+. ..++++..+||+++..+|..++..+.+|..+|+|+|... ...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 35689999999999987766554 447899999999999999999999999999999999754 4567788999988
Q ss_pred EcC
Q 005773 444 NYA 446 (678)
Q Consensus 444 ~~d 446 (678)
.-.
T Consensus 389 IDE 391 (681)
T PRK10917 389 IDE 391 (681)
T ss_pred Eec
Confidence 543
No 286
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.07 E-value=0.12 Score=52.89 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
.++++.||+|+|||..
T Consensus 43 ~~vll~GppGtGKTtl 58 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTV 58 (261)
T ss_pred ceEEEEcCCCCCHHHH
Confidence 4789999999999975
No 287
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.03 E-value=0.7 Score=51.41 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=25.4
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
....+++||||+|.|....+ +.+.+.++..|....+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 35788999999998865433 34455566555544444433
No 288
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.00 E-value=0.31 Score=55.88 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=26.5
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
+...+++||||+|.|.... .+.+.+++...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3567899999999876432 344566666666666555554
No 289
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.99 E-value=0.3 Score=56.84 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchhhhhh
Q 005773 163 RDICGSAITGSGKTAAF 179 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~ 179 (678)
+-+++.||||+|||++.
T Consensus 186 ~Vi~lVGpnGvGKTTTi 202 (767)
T PRK14723 186 GVLALVGPTGVGKTTTT 202 (767)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34669999999999863
No 290
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.98 E-value=0.17 Score=56.81 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=27.0
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
.+++++||||+|.|....+ +.+.+++...|....+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4688999999998875433 44556677666666555544
No 291
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.95 E-value=0.36 Score=50.51 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=28.5
Q ss_pred CCeeEEEEeCCccc--ccCChHHHHHHHHHHC-CCCccEEEEEeccChhHHH
Q 005773 270 DDLAVLILDEADRL--LELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDE 318 (678)
Q Consensus 270 ~~i~~lVvDEah~l--l~~gf~~~i~~i~~~~-~~~~q~il~SATl~~~~~~ 318 (678)
.+.++||||+.... .+|.....+..|++.. .....+++.|--...++..
T Consensus 216 ~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 216 KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEH 267 (306)
T ss_pred cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 35679999999854 3454334455565543 3445566666555444443
No 292
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.93 E-value=0.22 Score=54.88 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=22.5
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEec
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SAT 311 (678)
..+.++||||||.|....+ +.+...+...| .+++++-||
T Consensus 120 g~~KV~IIDEah~Ls~~A~-NALLKtLEEPp--~~viFILaT 158 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSF-NALLKTLEEPP--AHIVFILAT 158 (484)
T ss_pred CCCEEEEEechhhcCHHHH-HHHHHHhhcCC--CceEEEeec
Confidence 4678999999998865433 33344444432 344444344
No 293
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.92 E-value=0.47 Score=44.41 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=43.0
Q ss_pred CCCeeEEEEeCCcccccCCh--HHHHHHHHHHCCCCccEEEEEeccChhHHHHHH
Q 005773 269 LDDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf--~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~ 321 (678)
...+++||+||+-..++.|+ .+.+..+++..|...-+|+.+-.+|+++.+.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999999888775 466788888888888888888888888877654
No 294
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.91 E-value=0.86 Score=46.59 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=21.6
Q ss_pred CcHHHHHHHHHHh----cCC-CEEEEcCCCchhhhh
Q 005773 148 PTPIQAACIPLAL----TGR-DICGSAITGSGKTAA 178 (678)
Q Consensus 148 ~~~iQ~~~i~~ll----~g~-dvl~~a~TGsGKT~~ 178 (678)
+++.+..++..+. .+. .+++.|++|+|||+.
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 5556666665543 233 578999999999976
No 295
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.90 E-value=0.2 Score=57.00 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=71.5
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHH-HHHHHHhhcC
Q 005773 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH-SMIEKIAQFT 223 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g--~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~-~~~~~l~~~~ 223 (678)
..+|+|.+.+..+-.. +.|+++.++-+|||.+ ++.++-..+... +..+|++.||..+|.... ..+..+...+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~-~~n~~g~~i~~~----P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTEL-LLNWIGYSIDQD----PGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHH-HHhhceEEEEeC----CCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 5789999999887664 5788999999999986 344433333322 345899999999998765 4444443332
Q ss_pred CceeEEEec----CCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc
Q 005773 224 DIRCCLVVG----GLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (678)
Q Consensus 224 ~~~v~~~~g----~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (678)
..--..+.. ..........+. +..|.++... ....+.-..+.+|++||.|..-
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~-------S~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGAN-------SPSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHHHHhCchhhcccCCchhheecC-CCEEEEEeCC-------CCcccccCCcCEEEEechhhcc
Confidence 211111111 111111122222 3334444311 1112233467899999999984
No 296
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.87 E-value=0.16 Score=54.79 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=24.3
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
....++||||+|.|....+ +.+...+...|....+|+.|
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 4678999999999865333 33445555555555555443
No 297
>PF05729 NACHT: NACHT domain
Probab=93.87 E-value=0.24 Score=46.19 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=27.2
Q ss_pred EEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 005773 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (678)
Q Consensus 165 vl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~ 210 (678)
+++.|+.|+|||.. +..+...+...........+++..+.+.+..
T Consensus 3 l~I~G~~G~GKStl-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 3 LWISGEPGSGKSTL-LRKLAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEECCCCCChHHH-HHHHHHHHHhcCcccccceEEEEEeehhhhh
Confidence 67999999999975 5555555554433211123555555555544
No 298
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.84 E-value=0.36 Score=56.83 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=26.9
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccCh
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~ 314 (678)
..++++||||||.|... -.+.+.+++...|....+|+. .|-+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa-TTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA-TTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE-CCCch
Confidence 46789999999998543 334455666665555555543 44333
No 299
>CHL00181 cbbX CbbX; Provisional
Probab=93.83 E-value=0.56 Score=48.67 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
|.++++.||+|+|||..
T Consensus 59 ~~~ill~G~pGtGKT~l 75 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTV 75 (287)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45689999999999975
No 300
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.81 E-value=0.85 Score=49.73 Aligned_cols=131 Identities=12% Similarity=0.110 Sum_probs=64.2
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcC--cHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHH
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP--TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~P--tr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (678)
-++++|++|+|||++. .-+...+ ... +.+|++++- .|..|.+ +++.++...++.+.....+.++...
T Consensus 102 vi~lvG~~GvGKTTta-aKLA~~l-~~~----G~kV~lV~~D~~R~aA~e---QLk~~a~~~~vp~~~~~~~~dp~~i-- 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTC-TKLAYYY-QRK----GFKPCLVCADTFRAGAFD---QLKQNATKARIPFYGSYTESDPVKI-- 170 (429)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH-HHC----CCCEEEEcCcccchhHHH---HHHHHhhccCCeEEeecCCCCHHHH--
Confidence 3569999999999762 2222223 221 224454433 3544433 3444444455555433332221110
Q ss_pred HhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccccc-CChHHHHHHHHHHCCCCccEEEEEeccChhHHHHH
Q 005773 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELI 320 (678)
Q Consensus 242 ~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~-~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~ 320 (678)
..+.+.. ..-..+++||||=+-++-. ......+..+.....+..-+++++||...+....+
T Consensus 171 ---------------~~~~l~~---~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a 232 (429)
T TIGR01425 171 ---------------ASEGVEK---FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA 232 (429)
T ss_pred ---------------HHHHHHH---HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH
Confidence 0011111 0012456777777766432 12334455555555555557788888876655555
Q ss_pred HHh
Q 005773 321 KLS 323 (678)
Q Consensus 321 ~~~ 323 (678)
..+
T Consensus 233 ~~F 235 (429)
T TIGR01425 233 KAF 235 (429)
T ss_pred HHH
Confidence 443
No 301
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.78 E-value=0.12 Score=64.56 Aligned_cols=68 Identities=31% Similarity=0.314 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
++|+-|.++|. ..+++++|.|..|||||.+..--++..+... ....++|+|+=|+..|..+.+.+.+-
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~---~~~~~il~~tFt~~aa~e~~~ri~~~ 68 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG---VDIDRLLVVTFTNAAAREMKERIEEA 68 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC---CCHhhEEEEeccHHHHHHHHHHHHHH
Confidence 36899999997 3688999999999999988555566555433 23356999999999998888777654
No 302
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.77 E-value=0.19 Score=49.93 Aligned_cols=107 Identities=20% Similarity=0.225 Sum_probs=59.3
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l 243 (678)
-+++.|++|+|||.. +..+.+.+.... ++.+|+++.. .+....+...+.. +
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~---~~~~v~y~~~-~~f~~~~~~~~~~--------------~---------- 86 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQH---PGKRVVYLSA-EEFIREFADALRD--------------G---------- 86 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHC---TTS-EEEEEH-HHHHHHHHHHHHT--------------T----------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhcc---ccccceeecH-HHHHHHHHHHHHc--------------c----------
Confidence 378999999999974 444555444321 2345666543 3454433333321 0
Q ss_pred cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccC-ChHHHHHHHHHHCC-CCccEEEEEeccChhH
Q 005773 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFSAEIHELVRLCP-KRRQTMLFSATLTEDV 316 (678)
Q Consensus 244 ~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~-gf~~~i~~i~~~~~-~~~q~il~SATl~~~~ 316 (678)
....+.+. +..+++||||..|.+... .....+..+++.+. .+.++|+.|...|..+
T Consensus 87 ---------~~~~~~~~--------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 87 ---------EIEEFKDR--------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ---------SHHHHHHH--------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ---------cchhhhhh--------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 11122222 235679999999998753 24556666666553 3456666666666543
No 303
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.76 E-value=0.27 Score=57.64 Aligned_cols=72 Identities=25% Similarity=0.242 Sum_probs=58.0
Q ss_pred HHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcC-----Cceee-ccCCCCHHHHHHHHHHHhcCCccEEEEcccc
Q 005773 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA-----LKAAE-LHGNLTQAQRLEALELFRKQHVDFLIATDVA 430 (678)
Q Consensus 359 ~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~-----~~~~~-lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~ 430 (678)
..+..+.....+.++++.+||...+.+..+.|.... ..+.. +||.|+..++..++++|.+|.++|||+|..+
T Consensus 114 g~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 114 GLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 344445555567899999999999988888776542 44433 9999999999999999999999999999865
No 304
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.74 E-value=0.077 Score=58.33 Aligned_cols=142 Identities=17% Similarity=0.175 Sum_probs=66.6
Q ss_pred EEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH-HHhhcCCceeEEEecCCChHHHH----H
Q 005773 167 GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE-KIAQFTDIRCCLVVGGLSTKMQE----T 241 (678)
Q Consensus 167 ~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~-~l~~~~~~~v~~~~g~~~~~~~~----~ 241 (678)
+.++||||||++..-.|| +++..+-+ ..|+.|............+. .+....-+.-.+.+++....... .
T Consensus 2 f~matgsgkt~~ma~lil-~~y~kgyr----~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fs 76 (812)
T COG3421 2 FEMATGSGKTLVMAGLIL-ECYKKGYR----NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFS 76 (812)
T ss_pred cccccCCChhhHHHHHHH-HHHHhchh----hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccC
Confidence 467899999997444444 44433221 25666665554433222211 00000000001111221111000 0
Q ss_pred HhcCCCCEEEECchHHHHHHhccC--ccC---CCCee-EEEEeCCcccccCC-------------hHHHHHHHHHHCCCC
Q 005773 242 ALRSMPDIVVATPGRMIDHLRNSM--SVD---LDDLA-VLILDEADRLLELG-------------FSAEIHELVRLCPKR 302 (678)
Q Consensus 242 ~l~~~~dIiv~Tp~~L~~~l~~~~--~~~---l~~i~-~lVvDEah~ll~~g-------------f~~~i~~i~~~~~~~ 302 (678)
.......|+++|...|...+.+.. .+. +.+.. +++-||||++-... +...+..-+ ...+.
T Consensus 77 ehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~-~~nkd 155 (812)
T COG3421 77 EHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL-EQNKD 155 (812)
T ss_pred ccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH-hcCCC
Confidence 022345799999999977665432 222 33333 45679999975311 111111111 12334
Q ss_pred ccEEEEEeccCh
Q 005773 303 RQTMLFSATLTE 314 (678)
Q Consensus 303 ~q~il~SATl~~ 314 (678)
.-++.+|||.+.
T Consensus 156 ~~~lef~at~~k 167 (812)
T COG3421 156 NLLLEFSATIPK 167 (812)
T ss_pred ceeehhhhcCCc
Confidence 456788999983
No 305
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.70 E-value=0.34 Score=52.07 Aligned_cols=134 Identities=18% Similarity=0.155 Sum_probs=63.5
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCCCCCC-----CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHH
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIP-----AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM 238 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~-----~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~ 238 (678)
-+|+.||.|+||+.. ...+...++-...... .+..+.+++.-..|.++ .. ..++++. .+........
T Consensus 43 A~Lf~Gp~G~GK~~l-A~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i----~~-~~HPDl~--~i~~~~~~~~ 114 (365)
T PRK07471 43 AWLIGGPQGIGKATL-AYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI----AA-GAHGGLL--TLERSWNEKG 114 (365)
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH----Hc-cCCCCeE--EEeccccccc
Confidence 488999999999975 4555555553321111 12234455553333332 21 1223332 2221110000
Q ss_pred HHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEecc
Q 005773 239 QETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (678)
Q Consensus 239 ~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl 312 (678)
. +....|.|-..-.+...+.. ........++||||+|.|... -.+.+.+.++..|...-+|++|..+
T Consensus 115 ~----~~~~~I~VdqiR~l~~~~~~--~~~~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 115 K----RLRTVITVDEVRELISFFGL--TAAEGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred c----cccccccHHHHHHHHHHhCc--CcccCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 0 00112322222222222222 123457889999999987542 3445666666655555555555443
No 306
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.67 E-value=0.64 Score=52.93 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=26.1
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
....+++||||+|.|.... .+.+..++...|...-+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 3578899999999987543 334556666655555445444
No 307
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.67 E-value=0.72 Score=49.97 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=30.6
Q ss_pred CeeEEEEeCCcccc-cCChHHHHHHHHHHCC---CCccEEEEEeccCh-hHHHHHHHh
Q 005773 271 DLAVLILDEADRLL-ELGFSAEIHELVRLCP---KRRQTMLFSATLTE-DVDELIKLS 323 (678)
Q Consensus 271 ~i~~lVvDEah~ll-~~gf~~~i~~i~~~~~---~~~q~il~SATl~~-~~~~l~~~~ 323 (678)
..++||||=+-+.. +......+..++.... +..-++.+|||... ++...+..+
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 56789999776543 2223344555555442 22346888999887 444444443
No 308
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.67 E-value=1.1 Score=46.18 Aligned_cols=53 Identities=21% Similarity=0.359 Sum_probs=30.8
Q ss_pred CeeEEEEeCCccccc-CChHHHHHHHHHHCC------CCccEEEEEeccChhHHHHHHHh
Q 005773 271 DLAVLILDEADRLLE-LGFSAEIHELVRLCP------KRRQTMLFSATLTEDVDELIKLS 323 (678)
Q Consensus 271 ~i~~lVvDEah~ll~-~gf~~~i~~i~~~~~------~~~q~il~SATl~~~~~~l~~~~ 323 (678)
.+++||||=+-++.. ......+..+....+ ..--++.++||...+....+..+
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f 213 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVF 213 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHH
Confidence 566788887776542 223345555555544 44457888888765544444333
No 309
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.62 E-value=0.22 Score=56.91 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=24.7
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
...++++||||+|.|....|. .+...+...|....+|+.+
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred cCCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEE
Confidence 356889999999998765443 3444455444444444443
No 310
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.60 E-value=0.4 Score=54.25 Aligned_cols=135 Identities=19% Similarity=0.142 Sum_probs=82.2
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC--CceeEEEecCCChHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT--DIRCCLVVGGLSTKMQ 239 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~--~~~v~~~~g~~~~~~~ 239 (678)
.+-.++..|==.|||.. +.+++..++.. ..+.++++++|.+..+..+++.+....... +..+..+.| ...
T Consensus 254 qk~tVflVPRR~GKTwi-vv~iI~~ll~s---~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I--- 325 (738)
T PHA03368 254 QRATVFLVPRRHGKTWF-LVPLIALALAT---FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI--- 325 (738)
T ss_pred ccceEEEecccCCchhh-HHHHHHHHHHh---CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---
Confidence 46788899999999986 34666655533 236689999999999999998888765521 211222222 111
Q ss_pred HHHhcCC--CCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccCh
Q 005773 240 ETALRSM--PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTE 314 (678)
Q Consensus 240 ~~~l~~~--~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~ 314 (678)
.-.+.++ +.|.++|- .+.....-..++++|||||+-+-..-+...+ -.+.. .+.++|++|.|.+.
T Consensus 326 ~i~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~~--~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 326 SFSFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQ--TNCKIIFVSSTNTG 392 (738)
T ss_pred EEEecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHhc--cCccEEEEecCCCC
Confidence 0011222 35666541 2222233347889999999987653333322 22222 37899999998764
No 311
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.55 E-value=0.33 Score=52.81 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=19.1
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
.++++.|++|+|||.+ +-.++..+.
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~ 80 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELE 80 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5799999999999986 455555543
No 312
>PRK05580 primosome assembly protein PriA; Validated
Probab=93.54 E-value=0.29 Score=57.17 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=65.4
Q ss_pred CceEEEEeccHHHHHHHHHHHhh-cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCC
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC 447 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~ 447 (678)
+.++||.+|++..+.++...|.. .+..+..+||+++..+|...+.....|..+|+|+|..+.. +.+.++.+||.-+.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDEe 267 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDEE 267 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEECC
Confidence 56899999999999999888865 4788999999999999999999999999999999975432 56778888886553
No 313
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.52 E-value=0.11 Score=54.92 Aligned_cols=40 Identities=23% Similarity=0.043 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHHhcCC----CEEEEcCCCchhhhhhhhchhHHHh
Q 005773 148 PTPIQAACIPLALTGR----DICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 148 ~~~iQ~~~i~~ll~g~----dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
+.|+|...+..++... -.++.||.|.|||.. ...+...++
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~-A~~~A~~ll 47 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRAL-AERLAAALL 47 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHH-HHHHHHHHc
Confidence 4688888888877642 588999999999975 344444443
No 314
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.41 E-value=0.68 Score=52.86 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=26.4
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEecc
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl 312 (678)
..++++||||+|+|....+ +.+.+++...|....+|+ .+|-
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FIL-aTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLF-ATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEE-EECC
Confidence 4678999999998765433 445666666555554444 4443
No 315
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.40 E-value=0.98 Score=46.96 Aligned_cols=130 Identities=22% Similarity=0.294 Sum_probs=72.8
Q ss_pred EEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc-Cc-HHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHH
Q 005773 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT-PT-RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (678)
Q Consensus 165 vl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~-Pt-r~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (678)
+++.|..|+|||++ +.=|.+.+... +.+|++.+ -| |+-|. +++..|+...++.+..-..|.++..
T Consensus 142 il~vGVNG~GKTTT--IaKLA~~l~~~----g~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~DpAa---- 208 (340)
T COG0552 142 ILFVGVNGVGKTTT--IAKLAKYLKQQ----GKSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGADPAA---- 208 (340)
T ss_pred EEEEecCCCchHhH--HHHHHHHHHHC----CCeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCCcHH----
Confidence 56899999999986 33344444332 23455544 33 44443 2344444445665544222222111
Q ss_pred hcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccccc-CChHHHHHHHHHHCCCCcc-----EEEE-EeccChh
Q 005773 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQ-----TMLF-SATLTED 315 (678)
Q Consensus 243 l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~-~gf~~~i~~i~~~~~~~~q-----~il~-SATl~~~ 315 (678)
...+.+... .-.++++|++|=|-||-+ .+.-..+.+|.+.+.+... +++. -||...+
T Consensus 209 -------------VafDAi~~A---kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 209 -------------VAFDAIQAA---KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred -------------HHHHHHHHH---HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 122333321 134678899999998875 3466777788777765442 4444 8998877
Q ss_pred HHHHHHHh
Q 005773 316 VDELIKLS 323 (678)
Q Consensus 316 ~~~l~~~~ 323 (678)
-...++.|
T Consensus 273 al~QAk~F 280 (340)
T COG0552 273 ALSQAKIF 280 (340)
T ss_pred HHHHHHHH
Confidence 66655543
No 316
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.39 E-value=0.62 Score=53.53 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=25.0
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEE
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~ 308 (678)
..++++||||+|+|.... .+.+.++++.-|....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 468899999999887543 34455566665554444443
No 317
>PLN03025 replication factor C subunit; Provisional
Probab=93.37 E-value=0.75 Score=48.56 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=26.0
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccC
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~ 313 (678)
...+++||||+|.|... -...+..++...+.... ++++++..
T Consensus 98 ~~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~-~il~~n~~ 139 (319)
T PLN03025 98 GRHKIVILDEADSMTSG-AQQALRRTMEIYSNTTR-FALACNTS 139 (319)
T ss_pred CCeEEEEEechhhcCHH-HHHHHHHHHhcccCCce-EEEEeCCc
Confidence 35789999999998643 24455566665554444 44444433
No 318
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.21 E-value=0.12 Score=48.87 Aligned_cols=53 Identities=25% Similarity=0.417 Sum_probs=42.8
Q ss_pred CCeeEEEEeCCcccccCChH--HHHHHHHHHCCCCccEEEEEeccChhHHHHHHH
Q 005773 270 DDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~--~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~ 322 (678)
..+++||+||+-..+++|+. +.+..+++..|...-+|+..-.+|+.+.+.+..
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 57899999999998888854 567778888888888888888888888776653
No 319
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.05 E-value=0.35 Score=54.33 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=64.2
Q ss_pred CceEEEEeccHHHHHHHHHHHhh-cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcC
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA 446 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d 446 (678)
+.++||.+|+...+.++...|.. .+..+..+||+++..+|.+++....+|..+|+|+|..+-. +.+.++.+||.-+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 56899999999999999888865 3778999999999999999999999999999999976543 4567888888544
No 320
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.99 E-value=1.2 Score=49.46 Aligned_cols=17 Identities=35% Similarity=0.352 Sum_probs=14.0
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
|+-+++.||||+|||++
T Consensus 256 g~Vi~LvGpnGvGKTTT 272 (484)
T PRK06995 256 GGVFALMGPTGVGKTTT 272 (484)
T ss_pred CcEEEEECCCCccHHHH
Confidence 34466999999999986
No 321
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.97 E-value=0.2 Score=52.81 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=25.1
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
...++++||||||.|... -.+.+...+...+....+++.+
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 367899999999998652 3344455555545444444444
No 322
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.90 E-value=0.91 Score=51.24 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=26.9
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
.....++||||||+|... -.+.+..++...|....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 356789999999998653 3345566666666555555544
No 323
>PRK04195 replication factor C large subunit; Provisional
Probab=92.87 E-value=0.56 Score=52.62 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
.+.+++.||+|+|||.+
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999975
No 324
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.81 E-value=0.23 Score=51.43 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchhhhhh
Q 005773 162 GRDICGSAITGSGKTAAF 179 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~ 179 (678)
+.++++.||+|+|||+++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 457999999999999753
No 325
>PRK10867 signal recognition particle protein; Provisional
Probab=92.77 E-value=1.4 Score=48.36 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=13.0
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
-++++|++|+|||++
T Consensus 102 vI~~vG~~GsGKTTt 116 (433)
T PRK10867 102 VIMMVGLQGAGKTTT 116 (433)
T ss_pred EEEEECCCCCcHHHH
Confidence 366899999999986
No 326
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.68 E-value=0.13 Score=54.60 Aligned_cols=43 Identities=26% Similarity=0.307 Sum_probs=29.7
Q ss_pred HhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHH
Q 005773 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (678)
Q Consensus 159 ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~L 208 (678)
+..+++++++|+||||||+. +-.++..+ ....+++.+-.+.+|
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i------~~~~rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAI------PPQERLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHccc------CCCCCEEEECCCccc
Confidence 34578999999999999974 44444333 123357777788777
No 327
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.66 E-value=0.26 Score=50.68 Aligned_cols=40 Identities=28% Similarity=0.180 Sum_probs=24.7
Q ss_pred hcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcC
Q 005773 160 LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (678)
Q Consensus 160 l~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~P 204 (678)
..|.-+++.|++|+|||.. ++.++..+... .+.+|+++.-
T Consensus 28 ~~g~~~~i~g~~G~GKT~l-~~~~~~~~~~~----~g~~vl~iS~ 67 (271)
T cd01122 28 RKGELIILTAGTGVGKTTF-LREYALDLITQ----HGVRVGTISL 67 (271)
T ss_pred cCCcEEEEEcCCCCCHHHH-HHHHHHHHHHh----cCceEEEEEc
Confidence 3567788999999999975 33333333221 1345777653
No 328
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.63 E-value=0.18 Score=55.20 Aligned_cols=41 Identities=32% Similarity=0.313 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHhcCCC--EEEEcCCCchhhhhhhhchhHHHhcC
Q 005773 149 TPIQAACIPLALTGRD--ICGSAITGSGKTAAFALPTLERLLYR 190 (678)
Q Consensus 149 ~~iQ~~~i~~ll~g~d--vl~~a~TGsGKT~~~~l~~l~~l~~~ 190 (678)
++.|...+..+++... +++.||||||||++ +..+++.+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 5778888877777654 55899999999987 77778777543
No 329
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.62 E-value=0.78 Score=51.88 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=26.8
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
...++++||||+|.|....+ +.+.+.+...|....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35688999999998875433 34555666656666555554
No 330
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.55 E-value=0.99 Score=48.52 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=19.1
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
.++++.||+|+|||.+ +-.++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5799999999999976 455555543
No 331
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.47 E-value=1.3 Score=50.70 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=25.9
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
...++++||||+|.|... -.+.+.+++...|...-+|+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 357889999999987643 3345566666655544444433
No 332
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=0.13 Score=54.61 Aligned_cols=25 Identities=40% Similarity=0.411 Sum_probs=18.7
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
..|+|+.||||||||+. .-.|.+++
T Consensus 226 KSNvLllGPtGsGKTll--aqTLAr~l 250 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLL--AQTLARVL 250 (564)
T ss_pred cccEEEECCCCCchhHH--HHHHHHHh
Confidence 35899999999999974 44455553
No 333
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.39 E-value=2.2 Score=40.34 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=15.5
Q ss_pred EEEEcCCCchhhhhhhhchhHHH
Q 005773 165 ICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 165 vl~~a~TGsGKT~~~~l~~l~~l 187 (678)
+++.|++|+|||.. +.-+...+
T Consensus 3 ~~~~G~~G~GKTt~-~~~la~~~ 24 (173)
T cd03115 3 ILLVGLQGVGKTTT-AAKLALYL 24 (173)
T ss_pred EEEECCCCCCHHHH-HHHHHHHH
Confidence 56899999999976 34343333
No 334
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.28 E-value=0.92 Score=46.75 Aligned_cols=114 Identities=18% Similarity=0.135 Sum_probs=58.4
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhc---CCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHH
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLY---RPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQ 239 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~---~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~ 239 (678)
.++++.|+||-|||.+. --+...+. .......|-++|-+|...-....|..+-... +.... ...+....
T Consensus 62 p~lLivG~snnGKT~Ii--~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l---gaP~~---~~~~~~~~ 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII--ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL---GAPYR---PRDRVAKL 133 (302)
T ss_pred CceEEecCCCCcHHHHH--HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh---CcccC---CCCCHHHH
Confidence 58999999999999742 11221111 1111223566777887766555665554322 21110 11111111
Q ss_pred HHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHH--HHHHHHHHCCCCcc
Q 005773 240 ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA--EIHELVRLCPKRRQ 304 (678)
Q Consensus 240 ~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~--~i~~i~~~~~~~~q 304 (678)
.. ..+..+.. -++++|||||.|.++...... .+...++.+....+
T Consensus 134 ~~--------------~~~~llr~------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 134 EQ--------------QVLRLLRR------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ 180 (302)
T ss_pred HH--------------HHHHHHHH------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC
Confidence 10 11223333 267799999999998765433 23344444444433
No 335
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=92.22 E-value=0.71 Score=53.62 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=65.3
Q ss_pred CCceEEEEeccHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccccc-ccCCCCCccEEE
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA-RGLDIIGVQTVI 443 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~----~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~-~GlDi~~v~~VI 443 (678)
.+.+++|.+||+..+.++...+. ..++++..+||+++..+|..++....+|..+|+|+|...- ..+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 35689999999999988766554 4479999999999999999999999999999999997653 567788899888
Q ss_pred EcC
Q 005773 444 NYA 446 (678)
Q Consensus 444 ~~d 446 (678)
.=.
T Consensus 363 IDE 365 (630)
T TIGR00643 363 IDE 365 (630)
T ss_pred Eec
Confidence 543
No 336
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.20 E-value=0.41 Score=62.20 Aligned_cols=62 Identities=24% Similarity=0.341 Sum_probs=44.2
Q ss_pred CCCcHHHHHHHHHHhcCC--CEEEEcCCCchhhhhhh---hchhHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 005773 146 SKPTPIQAACIPLALTGR--DICGSAITGSGKTAAFA---LPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (678)
Q Consensus 146 ~~~~~iQ~~~i~~ll~g~--dvl~~a~TGsGKT~~~~---l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~ 212 (678)
..+++.|..++..++.+. -+++.|..|+|||+... -++.+.+ . ..+..|+.++||-..+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~----~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-E----SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-H----hcCCeEEEEeChHHHHHHH
Confidence 369999999999998864 46689999999997521 2233332 2 1245688999998776654
No 337
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.15 E-value=0.92 Score=50.81 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=14.2
Q ss_pred CEEEEcCCCchhhhhh
Q 005773 164 DICGSAITGSGKTAAF 179 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~ 179 (678)
.+|++||.|+|||.++
T Consensus 45 a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 45 GYLLTGIRGVGKTTSA 60 (507)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999863
No 338
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.10 E-value=0.8 Score=51.38 Aligned_cols=23 Identities=26% Similarity=0.059 Sum_probs=16.8
Q ss_pred EEEEcCCCchhhhhhhhchhHHHh
Q 005773 165 ICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 165 vl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
++++||.|+|||++ ...+...+.
T Consensus 39 ~Lf~GppGtGKTTl-A~~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTT-ARLIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHh
Confidence 58999999999986 344444443
No 339
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.10 E-value=1.2 Score=47.25 Aligned_cols=42 Identities=19% Similarity=0.134 Sum_probs=27.0
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEec
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SAT 311 (678)
....+++|||+||+|... -.+.+.+.++.-|...-+|++|..
T Consensus 130 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 130 RGGARVVVLYPAEALNVA-AANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHhcCCCcCcEEEEEECC
Confidence 467899999999998643 345556666655554444444433
No 340
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.03 E-value=0.27 Score=50.93 Aligned_cols=17 Identities=41% Similarity=0.419 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
++.++++||||+|||++
T Consensus 194 ~~vi~~vGptGvGKTTt 210 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTT 210 (282)
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34677999999999976
No 341
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.03 E-value=0.35 Score=51.21 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=28.8
Q ss_pred hcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHH
Q 005773 160 LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (678)
Q Consensus 160 l~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~L 208 (678)
..+++++++|+||||||+. +-.++..+- ...+++++=-+.+|
T Consensus 158 ~~~~nili~G~tgSGKTTl-l~aL~~~ip------~~~ri~tiEd~~El 199 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTF-TNAALREIP------AIERLITVEDAREI 199 (332)
T ss_pred HcCCcEEEECCCCCCHHHH-HHHHHhhCC------CCCeEEEecCCCcc
Confidence 3568999999999999974 444554441 23456776666666
No 342
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.02 E-value=2.7 Score=46.02 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=27.1
Q ss_pred CeeEEEEeCCccccc-CChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHh
Q 005773 271 DLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLS 323 (678)
Q Consensus 271 ~i~~lVvDEah~ll~-~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~ 323 (678)
.+++||||=+-++.. ......+..+...+.+.--++.++||...+....+..+
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f 235 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTF 235 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHH
Confidence 355677777765431 22333444444444333335666777665555554443
No 343
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.99 E-value=1.3 Score=48.25 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=23.3
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEec
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SAT 311 (678)
....+++||||+|.|..... +.+...++..+... ++++.++
T Consensus 125 ~~~~kvvIIdea~~l~~~~~-~~LLk~LEep~~~t-~~Il~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAAF-NAFLKTLEEPPPHA-IFIFATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCHHHH-HHHHHHHhcCCCCe-EEEEEeC
Confidence 46778999999999865322 23344444433333 3344443
No 344
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.92 E-value=0.21 Score=49.87 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=64.2
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc-------CCceeEEEecCC
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF-------TDIRCCLVVGGL 234 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~-------~~~~v~~~~g~~ 234 (678)
|..+++.|++|+|||+..+..+.+.+... +-++++++- .+-..++.+.+..+.-. ..+.+.......
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~-----ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF-----GEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH-----T--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc-----CCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccc
Confidence 46788999999999976444444444320 224677764 34445555555543210 011111111100
Q ss_pred ChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccccc----CChHHHHHHHHHHCCCCccEEEEEe
Q 005773 235 STKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE----LGFSAEIHELVRLCPKRRQTMLFSA 310 (678)
Q Consensus 235 ~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~----~gf~~~i~~i~~~~~~~~q~il~SA 310 (678)
... . -..+..+...+.+. +.-.+..++|||-...+.. ..+...+..+...+.....+.++++
T Consensus 93 ~~~----------~--~~~~~~l~~~i~~~--i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 93 IGW----------S--PNDLEELLSKIREA--IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp ST-----------T--SCCHHHHHHHHHHH--HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccc----------c--ccCHHHHHHHHHHH--HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 000 0 11233333333321 1111237999999888732 2245556666666655556777777
Q ss_pred cc
Q 005773 311 TL 312 (678)
Q Consensus 311 Tl 312 (678)
..
T Consensus 159 ~~ 160 (226)
T PF06745_consen 159 EM 160 (226)
T ss_dssp EE
T ss_pred cc
Confidence 74
No 345
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=91.90 E-value=0.46 Score=50.37 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchhhhhh
Q 005773 163 RDICGSAITGSGKTAAF 179 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~ 179 (678)
.+.|+.||+|+|||..+
T Consensus 49 ~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 49 HSMILWGPPGTGKTTLA 65 (436)
T ss_pred ceeEEECCCCCCHHHHH
Confidence 37999999999999753
No 346
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.90 E-value=0.2 Score=47.96 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=27.3
Q ss_pred HhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 005773 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (678)
Q Consensus 159 ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q 211 (678)
+-.++++++.|++|+|||.. ...+...+... +..|++ ++...|...
T Consensus 44 ~~~~~~l~l~G~~G~GKThL-a~ai~~~~~~~-----g~~v~f-~~~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHL-AVAIANEAIRK-----GYSVLF-ITASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHH-HHHHHHHHHHT-----T--EEE-EEHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHH-HHHHHHHhccC-----CcceeE-eecCceecc
Confidence 34578999999999999976 45555555543 223555 455566544
No 347
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=91.82 E-value=0.83 Score=54.97 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=65.6
Q ss_pred CCceEEEEeccHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc-cccCCCCCccEEE
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTVI 443 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~-~~GlDi~~v~~VI 443 (678)
.+.+++|.+||...|.+....|.. .++++..++|.++..++..++..+..|+.+|+|+|..+ ...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 357899999999999998876654 46788899999999999999999999999999999744 4567888999988
Q ss_pred EcC
Q 005773 444 NYA 446 (678)
Q Consensus 444 ~~d 446 (678)
.-.
T Consensus 579 IDE 581 (926)
T TIGR00580 579 IDE 581 (926)
T ss_pred eec
Confidence 543
No 348
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.78 E-value=0.17 Score=52.01 Aligned_cols=43 Identities=30% Similarity=0.261 Sum_probs=29.7
Q ss_pred hcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHH
Q 005773 160 LTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (678)
Q Consensus 160 l~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~L 208 (678)
..+.+++++|+||||||+. +-.++..+-.. ..+++++-.+.++
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~~-----~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPPE-----DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHTT-----TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchH-HHHHhhhcccc-----ccceEEeccccce
Confidence 3467999999999999975 45555554322 2467887777776
No 349
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.75 E-value=0.94 Score=49.16 Aligned_cols=47 Identities=28% Similarity=0.366 Sum_probs=29.0
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHH
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVD 317 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~ 317 (678)
....+++||||+|+|... ..+.+.++++..|... ++++++|-+..+.
T Consensus 115 ~~~~kViiIDead~m~~~-aanaLLk~LEep~~~~-~fIL~a~~~~~ll 161 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER-AANALLKAVEEPPPRT-VWLLCAPSPEDVL 161 (394)
T ss_pred cCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCC-eEEEEECChHHCh
Confidence 357789999999998643 3355566666544444 4555555444433
No 350
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.69 E-value=1.3 Score=50.87 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=23.8
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEec
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SAT 311 (678)
+...++|||||+|.|.... .+.+..++...+.. -++++.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~-tv~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPH-AIFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCC-eEEEEEeC
Confidence 4578899999999876532 23344444444433 33444443
No 351
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.66 E-value=0.34 Score=50.98 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=28.2
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEe
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 310 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SA 310 (678)
.+..+++|||+||.|... -.+.+.++++.-|...-+|+.|.
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEEC
Confidence 457899999999998753 45566677777665555555443
No 352
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.64 E-value=0.43 Score=53.29 Aligned_cols=44 Identities=32% Similarity=0.347 Sum_probs=29.3
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcCC--CEEEEcCCCchhhhhhhhchhHHH
Q 005773 140 CEALGYSKPTPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 140 l~~~g~~~~~~iQ~~~i~~ll~g~--dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
+..+|| .+-|.+.+..++... -++++||||||||++ +..++..+
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 345554 456776776666543 367999999999986 44455555
No 353
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.64 E-value=1.3 Score=49.85 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHhcC------CC-EEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 005773 149 TPIQAACIPLALTG------RD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (678)
Q Consensus 149 ~~iQ~~~i~~ll~g------~d-vl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 216 (678)
|--|..++-.++.. +. +-+.|.-|-||+.|.-+.+..++... -..+.|..|.-+-..-+++.+
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~G-----ysnIyvtSPspeNlkTlFeFv 324 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFG-----YSNIYVTSPSPENLKTLFEFV 324 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcC-----cceEEEcCCChHHHHHHHHHH
Confidence 66788887665542 33 44899999999998778877776443 234788999987766555544
No 354
>PRK14873 primosome assembly protein PriA; Provisional
Probab=91.64 E-value=0.76 Score=53.25 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=64.0
Q ss_pred CceEEEEeccHHHHHHHHHHHhhc-C-CceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcC
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGLA-A-LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA 446 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~~-~-~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d 446 (678)
+..+||.+|....+.++...|... + ..+..+|++++..+|.+......+|+.+|+|.|..+-- +-+++...||..+
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCCCEEEEEc
Confidence 678999999999999998888754 3 67999999999999999999999999999999987543 4556777777544
No 355
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.63 E-value=0.33 Score=52.07 Aligned_cols=27 Identities=22% Similarity=-0.002 Sum_probs=20.3
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhc
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLY 189 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~ 189 (678)
+..++++||||||||+. +-.++..+..
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 45688999999999975 5556666543
No 356
>PRK10436 hypothetical protein; Provisional
Probab=91.60 E-value=0.39 Score=53.11 Aligned_cols=38 Identities=39% Similarity=0.369 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHhc--CCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 149 TPIQAACIPLALT--GRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 149 ~~iQ~~~i~~ll~--g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.+-|...+..++. +.-++++||||||||++ +..++..+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 3455555655544 34578999999999986 45566665
No 357
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.57 E-value=0.65 Score=46.72 Aligned_cols=51 Identities=18% Similarity=0.069 Sum_probs=33.3
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
|..+++.|++|+|||+..+..+.+.+ .+ +.++++++ +-+-..|+.+.+..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~-~~-----ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL-QM-----GEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-Hc-----CCcEEEEE-eeCCHHHHHHHHHHh
Confidence 56788999999999976444444444 22 33567776 445566666666654
No 358
>PF13173 AAA_14: AAA domain
Probab=91.53 E-value=1.7 Score=39.01 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=23.6
Q ss_pred CeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEe
Q 005773 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 310 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SA 310 (678)
.-.+|+|||+|.+-+ +...+..+.... .+.++++.+.
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGS 97 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEcc
Confidence 345899999999875 556666666644 3345444433
No 359
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.42 E-value=0.52 Score=49.50 Aligned_cols=57 Identities=33% Similarity=0.375 Sum_probs=40.7
Q ss_pred CCCCcHHHHHHHHHHh-cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHH
Q 005773 145 YSKPTPIQAACIPLAL-TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (678)
Q Consensus 145 ~~~~~~iQ~~~i~~ll-~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~L 208 (678)
+..+++.|..-+..++ .+++++++|+||||||.. +.+++..+ .+..+++.+=-|.++
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~I------p~~~rivtIEdt~E~ 182 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFI------PPEERIVTIEDTPEL 182 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhC------CchhcEEEEeccccc
Confidence 4567788877766555 468999999999999975 56665554 234467777777666
No 360
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=91.32 E-value=0.8 Score=43.90 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=53.0
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l 243 (678)
=.+++|||+||||.. +|-.+.+.... +.++++..|-..- . .+...+.-.-|.+
T Consensus 6 l~~i~gpM~SGKT~e-Ll~r~~~~~~~-----g~~v~vfkp~iD~------R-------~~~~~V~Sr~G~~-------- 58 (201)
T COG1435 6 LEFIYGPMFSGKTEE-LLRRARRYKEA-----GMKVLVFKPAIDT------R-------YGVGKVSSRIGLS-------- 58 (201)
T ss_pred EEEEEccCcCcchHH-HHHHHHHHHHc-----CCeEEEEeccccc------c-------cccceeeeccCCc--------
Confidence 357899999999986 45444444333 4468888885321 1 1111111112211
Q ss_pred cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc
Q 005773 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (678)
Q Consensus 244 ~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (678)
.+-++|-++..+.+++.... . ...+.+|.||||+-+.
T Consensus 59 --~~A~~i~~~~~i~~~i~~~~-~-~~~~~~v~IDEaQF~~ 95 (201)
T COG1435 59 --SEAVVIPSDTDIFDEIAALH-E-KPPVDCVLIDEAQFFD 95 (201)
T ss_pred --ccceecCChHHHHHHHHhcc-c-CCCcCEEEEehhHhCC
Confidence 13467778888888887532 1 1127899999999643
No 361
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.32 E-value=1.5 Score=49.96 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=20.2
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCC
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~ 301 (678)
....+++||||+|.|....+ +.+...+...|.
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~-naLLKtLEepp~ 148 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAF-NALLKTLEEPPA 148 (559)
T ss_pred cCCeEEEEEECcccCCHHHH-HHHHHHhcCCCC
Confidence 45788999999998865333 334444444333
No 362
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=91.21 E-value=0.78 Score=43.47 Aligned_cols=141 Identities=19% Similarity=0.237 Sum_probs=66.3
Q ss_pred EEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCC-ChHHHHHHh
Q 005773 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGL-STKMQETAL 243 (678)
Q Consensus 165 vl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~-~~~~~~~~l 243 (678)
+.+.--.|-|||++++=-++..+ ..+.+|+|+.=.+.- .-+.....+....++.+...-.+. ........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~------G~G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~~- 76 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA------GHGMRVLIVQFLKGG--RYSGELKALKKLPNVEIERFGKGFVWRMNEEEE- 76 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH------CTT--EEEEESS--S--S--HHHHHHGGGT--EEEE--TT----GGGHHH-
T ss_pred EEEEeCCCCCchHHHHHHHHHHH------hCCCEEEEEEEecCC--CCcCHHHHHHhCCeEEEEEcCCcccccCCCcHH-
Confidence 33555678999998665566555 345678888765541 112233333333333322111110 00000000
Q ss_pred cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChH--HHHHHHHHHCCCCccEEEEEeccChhHHHHHH
Q 005773 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (678)
Q Consensus 244 ~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~--~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~ 321 (678)
+ .......++.... .+.-..+++||+||+-..++.|+. ..+..++...|...-+|+..-.+|+.+.+.+.
T Consensus 77 ----~--~~~~~~~~~~a~~--~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 77 ----D--RAAAREGLEEAKE--AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp ----H--HHHHHHHHHHHHH--HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred ----H--HHHHHHHHHHHHH--HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 0 0000111121111 122357899999999998888864 56777888778777788888888888877664
Q ss_pred H
Q 005773 322 L 322 (678)
Q Consensus 322 ~ 322 (678)
.
T Consensus 149 l 149 (172)
T PF02572_consen 149 L 149 (172)
T ss_dssp E
T ss_pred e
Confidence 3
No 363
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.09 E-value=0.38 Score=51.49 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=19.8
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
.+.-++++||||||||+. +-.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 456788999999999985 444555443
No 364
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.09 E-value=2 Score=47.22 Aligned_cols=139 Identities=22% Similarity=0.252 Sum_probs=74.1
Q ss_pred cCCCCHHHHHHHHHcCCCCCcHHHHHHHHH----HhcC--------CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCC
Q 005773 129 ELNLSRPLLRACEALGYSKPTPIQAACIPL----ALTG--------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPA 196 (678)
Q Consensus 129 ~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~----ll~g--------~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 196 (678)
.+|.+..-++.+...|.-...+.=..++.. +.+- ..+++.||.|||||..+.-.++. ...
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~--------S~F 564 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS--------SDF 564 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh--------cCC
Confidence 357777777777776655444443333322 2111 36889999999999643322221 124
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEE
Q 005773 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (678)
Q Consensus 197 ~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lV 276 (678)
|-|=|+.|..... .+.......+++ .+.+. .-+.++++|
T Consensus 565 PFvKiiSpe~miG------------------------~sEsaKc~~i~k----------~F~DA-------YkS~lsiiv 603 (744)
T KOG0741|consen 565 PFVKIISPEDMIG------------------------LSESAKCAHIKK----------IFEDA-------YKSPLSIIV 603 (744)
T ss_pred CeEEEeChHHccC------------------------ccHHHHHHHHHH----------HHHHh-------hcCcceEEE
Confidence 5567777753221 111111111110 11111 234577999
Q ss_pred EeCCcccccCC-----hHHHHHHH----HHHCC-CCccEEEEEeccChhH
Q 005773 277 LDEADRLLELG-----FSAEIHEL----VRLCP-KRRQTMLFSATLTEDV 316 (678)
Q Consensus 277 vDEah~ll~~g-----f~~~i~~i----~~~~~-~~~q~il~SATl~~~~ 316 (678)
||+..++++|. |.+.+.+. ++..| +.+++++|..|-...+
T Consensus 604 vDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~v 653 (744)
T KOG0741|consen 604 VDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREV 653 (744)
T ss_pred EcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHH
Confidence 99999999875 55544433 33333 3455666666644443
No 365
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.09 E-value=0.51 Score=53.50 Aligned_cols=39 Identities=21% Similarity=0.134 Sum_probs=23.4
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
...+++||||||.|... -.+.+..++...|...-+|+++
T Consensus 118 ~~~KVIIIDEad~Lt~~-A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTS-AWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCHH-HHHHHHHHHHhCCCcEEEEEEC
Confidence 45789999999987543 2344555555554443333333
No 366
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.03 E-value=2.2 Score=41.11 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=24.3
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEec
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SAT 311 (678)
.....++||||+|.+... ..+.+..+++..+... +++|.++
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~-~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNT-LFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCe-EEEEEEC
Confidence 456789999999998643 2344555555544333 3444433
No 367
>PRK13342 recombination factor protein RarA; Reviewed
Probab=90.96 E-value=1.1 Score=49.32 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=13.7
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
.+++.||+|+|||..
T Consensus 38 ~ilL~GppGtGKTtL 52 (413)
T PRK13342 38 SMILWGPPGTGKTTL 52 (413)
T ss_pred eEEEECCCCCCHHHH
Confidence 789999999999975
No 368
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.90 E-value=0.44 Score=48.79 Aligned_cols=44 Identities=32% Similarity=0.318 Sum_probs=29.0
Q ss_pred HHHcCCCCCcHHHHHHHHHHhc-C-CCEEEEcCCCchhhhhhhhchhHHH
Q 005773 140 CEALGYSKPTPIQAACIPLALT-G-RDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 140 l~~~g~~~~~~iQ~~~i~~ll~-g-~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
+..+|+ .+.|.+.+..++. . ..++++|+||||||+. +..++..+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 345554 4556666665554 3 4578999999999975 44555554
No 369
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.83 E-value=1.5 Score=49.27 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=27.9
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
...++++||||||.|... -.+.+..++...|....+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 457899999999998643 3345566666666666666555
No 370
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.82 E-value=0.32 Score=55.20 Aligned_cols=76 Identities=21% Similarity=0.364 Sum_probs=56.9
Q ss_pred HHHHhcCCccEEEEcccccccCCCCCccEE--------EEcCCCCChhHHHHHHhhcccCCC-ceEEEEEe-eC--CcHH
Q 005773 413 LELFRKQHVDFLIATDVAARGLDIIGVQTV--------INYACPRDLTSYVHRVGRTARAGR-EGYAVTFV-TD--NDRS 480 (678)
Q Consensus 413 l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V--------I~~d~p~s~~~yiQr~GRagR~g~-~G~~i~l~-~~--~d~~ 480 (678)
-++|..|+-.|-|-+.+++-||-++.-+.| |-+.+|||...-+|..|||+|.++ .+.-|+|+ ++ .++.
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 467999999999999999999999776555 458899999999999999999664 34444443 32 4666
Q ss_pred HHHHHHHH
Q 005773 481 LLKAIAKR 488 (678)
Q Consensus 481 ~l~~i~~~ 488 (678)
+..-+.++
T Consensus 930 FAS~VAKR 937 (1300)
T KOG1513|consen 930 FASIVAKR 937 (1300)
T ss_pred HHHHHHHH
Confidence 65555544
No 371
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.79 E-value=3.1 Score=43.82 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=30.9
Q ss_pred CCeeEEEEeCCccccc-CChHHHHHHHHHHC------CCCccEEEEEeccChhHHHHHHHh
Q 005773 270 DDLAVLILDEADRLLE-LGFSAEIHELVRLC------PKRRQTMLFSATLTEDVDELIKLS 323 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~-~gf~~~i~~i~~~~------~~~~q~il~SATl~~~~~~l~~~~ 323 (678)
.++++||||=+-++.. ......+..+.+.+ .+..-++.++||...+....+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 3567888888887652 22334555554432 223346888999765544444433
No 372
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.64 E-value=1 Score=46.45 Aligned_cols=114 Identities=18% Similarity=0.272 Sum_probs=68.0
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHH-----------HHHHHHHHHHHHhhcCCceeEEE
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE-----------LAVQVHSMIEKIAQFTDIRCCLV 230 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~-----------La~Q~~~~~~~l~~~~~~~v~~~ 230 (678)
+|=+++.||+|+|||.. +-++.++|.-+-........||=...-. |+.++++.+.++....+.-|.++
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 46678999999999965 6777777765543333333455454444 44555566666666656555555
Q ss_pred ecCC---------------ChH---------HHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccC
Q 005773 231 VGGL---------------STK---------MQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (678)
Q Consensus 231 ~g~~---------------~~~---------~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~ 286 (678)
.... +.+ .|...++..++|+|-|..-|.+ .++.-.||-||-....
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----------siD~AfVDRADi~~yV 324 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----------SIDVAFVDRADIVFYV 324 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----------HHHHHhhhHhhheeec
Confidence 4321 111 2334456667777666544443 4456778999977665
Q ss_pred C
Q 005773 287 G 287 (678)
Q Consensus 287 g 287 (678)
|
T Consensus 325 G 325 (423)
T KOG0744|consen 325 G 325 (423)
T ss_pred C
Confidence 5
No 373
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=90.62 E-value=0.55 Score=49.30 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=28.4
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEec
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SAT 311 (678)
...++++|||+||.|... -.+.+.++++.-|...-+|++|..
T Consensus 106 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 457899999999998643 445566677765555545555443
No 374
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.62 E-value=1.6 Score=43.68 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=30.3
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 218 (678)
.|.-+++.|++|+|||+. ++.++..+... +.++++++.. +-..+..+.+..
T Consensus 23 ~g~~~~i~G~~G~GKTtl-~~~~~~~~~~~-----g~~~~yi~~e-~~~~~~~~~~~~ 73 (230)
T PRK08533 23 AGSLILIEGDESTGKSIL-SQRLAYGFLQN-----GYSVSYVSTQ-LTTTEFIKQMMS 73 (230)
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHhC-----CCcEEEEeCC-CCHHHHHHHHHH
Confidence 467788999999999975 33444444332 2356777743 333444444443
No 375
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.61 E-value=0.85 Score=50.75 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=13.2
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
.+|++||+|+|||+.
T Consensus 38 ~~Lf~GPpGtGKTTl 52 (472)
T PRK14962 38 AYIFAGPRGTGKTTV 52 (472)
T ss_pred EEEEECCCCCCHHHH
Confidence 368999999999976
No 376
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.49 E-value=0.35 Score=54.86 Aligned_cols=157 Identities=20% Similarity=0.178 Sum_probs=87.5
Q ss_pred CCCCcHHHHHHHHHHhcC---------C-CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHH
Q 005773 145 YSKPTPIQAACIPLALTG---------R-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHS 214 (678)
Q Consensus 145 ~~~~~~iQ~~~i~~ll~g---------~-dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~ 214 (678)
-..++..|.+++-.+.+. + ..|+....|-||--+..-.|++..+.. +.++|.+.-+..|-....+
T Consensus 262 sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG-----RKrAlW~SVSsDLKfDAER 336 (1300)
T KOG1513|consen 262 SGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG-----RKRALWFSVSSDLKFDAER 336 (1300)
T ss_pred ccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc-----cceeEEEEeccccccchhh
Confidence 345788898888766542 1 355666666666544344455555443 4468999888888665555
Q ss_pred HHHHHhhcCCceeEEEecCCC----hHHHHHHhcCCCCEEEECchHHHHHHhccCccC------C------CCeeEEEEe
Q 005773 215 MIEKIAQFTDIRCCLVVGGLS----TKMQETALRSMPDIVVATPGRMIDHLRNSMSVD------L------DDLAVLILD 278 (678)
Q Consensus 215 ~~~~l~~~~~~~v~~~~g~~~----~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~------l------~~i~~lVvD 278 (678)
.+..+. .++|.|..+.-..- .+.. ... .-.|+++|+-.|+-.-....... | .-=.+||+|
T Consensus 337 DL~Dig-A~~I~V~alnK~KYakIss~en-~n~--krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfD 412 (1300)
T KOG1513|consen 337 DLRDIG-ATGIAVHALNKFKYAKISSKEN-TNT--KRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFD 412 (1300)
T ss_pred chhhcC-CCCccceehhhccccccccccc-CCc--cceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEeh
Confidence 555543 34566654432211 1100 001 12599999987754333211100 0 111489999
Q ss_pred CCcccccC---------ChHHHHHHHHHHCCCCccEEEEEec
Q 005773 279 EADRLLEL---------GFSAEIHELVRLCPKRRQTMLFSAT 311 (678)
Q Consensus 279 Eah~ll~~---------gf~~~i~~i~~~~~~~~q~il~SAT 311 (678)
|||.--+. -....+..+-+.+| +.+++.-|||
T Consensus 413 ECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASAT 453 (1300)
T KOG1513|consen 413 ECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASAT 453 (1300)
T ss_pred hhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeecc
Confidence 99985441 13345556666665 3457777777
No 377
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.48 E-value=1.4 Score=54.45 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=63.6
Q ss_pred CCceEEEEeccHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc-ccccCCCCCccEEE
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-AARGLDIIGVQTVI 443 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~-~~~GlDi~~v~~VI 443 (678)
.+.+++|.+||+..+.++...|.. .++.+..++|..+..++..++..+.+|..+|+|+|.. +...+.+.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 467899999999999988877654 3567888999999999999999999999999999964 44556778888888
Q ss_pred E
Q 005773 444 N 444 (678)
Q Consensus 444 ~ 444 (678)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 4
No 378
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=90.40 E-value=0.33 Score=52.74 Aligned_cols=56 Identities=21% Similarity=0.180 Sum_probs=39.5
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEe
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 231 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~ 231 (678)
++++.|+||||||.++++|.+-.. +..++|+=|--++........+. .+..|.++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~--------~~s~vv~D~Kge~~~~t~~~r~~----~G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW--------PGSVVVLDPKGENFELTSEHRRA----LGRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC--------CCCEEEEccchhHHHHHHHHHHH----cCCeEEEEc
Confidence 478999999999999988876432 24589999998997665544443 244444443
No 379
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=90.27 E-value=1.2 Score=52.04 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=24.2
Q ss_pred CeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhH
Q 005773 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~ 316 (678)
...+|||||+|++... ... .++..+. ..++++++||-.+..
T Consensus 109 ~~~IL~IDEIh~Ln~~-qQd---aLL~~lE-~g~IiLI~aTTenp~ 149 (725)
T PRK13341 109 KRTILFIDEVHRFNKA-QQD---ALLPWVE-NGTITLIGATTENPY 149 (725)
T ss_pred CceEEEEeChhhCCHH-HHH---HHHHHhc-CceEEEEEecCCChH
Confidence 3558999999987532 122 2233332 356778888765433
No 380
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.21 E-value=2.1 Score=49.18 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=24.5
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
....+++||||+|.|.... .+.+..+++..|...-+|+.+
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4578899999999986532 334455555544443334433
No 381
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=90.19 E-value=0.58 Score=53.41 Aligned_cols=44 Identities=32% Similarity=0.365 Sum_probs=29.9
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchhhhhhhhchhHHH
Q 005773 140 CEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 140 l~~~g~~~~~~iQ~~~i~~ll~g--~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
+..+|| .+-|...+..++.. .-++++||||||||++ +..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 455665 35666666665553 4577999999999986 45666665
No 382
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.19 E-value=3.4 Score=43.30 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=24.4
Q ss_pred CeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
...+|||||+|.+... ....+..++...+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999988542 2345556666655555555544
No 383
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=90.07 E-value=0.37 Score=51.09 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=28.1
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEec
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SAT 311 (678)
.+..+++|||+||.|-.. -.+.+.++++.-|...-+|++|.-
T Consensus 106 ~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDA-AANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred cCCceEEEEcchHhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 467899999999998643 455666666665555444554443
No 384
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.81 E-value=1.7 Score=51.18 Aligned_cols=44 Identities=14% Similarity=0.303 Sum_probs=26.5
Q ss_pred eEEEEeCCcccccCCh----HHHHHHHHHHCCCCccEEEEEeccChhH
Q 005773 273 AVLILDEADRLLELGF----SAEIHELVRLCPKRRQTMLFSATLTEDV 316 (678)
Q Consensus 273 ~~lVvDEah~ll~~gf----~~~i~~i~~~~~~~~q~il~SATl~~~~ 316 (678)
.+|+|||+|.+...|- ...+..++..+-...++.++.||-.++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 4899999999975432 2233334443333455677777766554
No 385
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.80 E-value=0.42 Score=57.14 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=80.8
Q ss_pred ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcC
Q 005773 367 KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA 446 (678)
Q Consensus 367 ~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d 446 (678)
+....++|||+.-......+...+...++.....-+ .++-...+..|.+ --.+||-+...+-|+|+-+..||+..+
T Consensus 1218 k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~e 1293 (1394)
T KOG0298|consen 1218 KNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVE 1293 (1394)
T ss_pred cCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheec
Confidence 444578999999888888888777777776654444 3444556667765 233567788889999999999999999
Q ss_pred CCCChhHHHHHHhhcccCCCce--EEEEEeeCC
Q 005773 447 CPRDLTSYVHRVGRTARAGREG--YAVTFVTDN 477 (678)
Q Consensus 447 ~p~s~~~yiQr~GRagR~g~~G--~~i~l~~~~ 477 (678)
+-.|+..-.|.+||.+|.|++- .+..|+-.+
T Consensus 1294 PiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~ 1326 (1394)
T KOG0298|consen 1294 PILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNE 1326 (1394)
T ss_pred cccCchHHHhhhhhhhhcccccchhhhhhhhcc
Confidence 9999999999999999999753 344444333
No 386
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.76 E-value=0.55 Score=45.30 Aligned_cols=32 Identities=44% Similarity=0.461 Sum_probs=25.5
Q ss_pred CCcHHHHHHHHHHhc-CCCEEEEcCCCchhhhh
Q 005773 147 KPTPIQAACIPLALT-GRDICGSAITGSGKTAA 178 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~-g~dvl~~a~TGsGKT~~ 178 (678)
.+++-|...+...+. |..++++|+||||||+.
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 456777777776655 67889999999999975
No 387
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=89.61 E-value=3.6 Score=43.50 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=29.7
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHH
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVD 317 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~ 317 (678)
....+++|+|++|.|-.. ..+.+.++++..+.... ++++++-+..+.
T Consensus 111 ~~~~kV~iiEp~~~Ld~~-a~naLLk~LEep~~~~~-~Ilvth~~~~ll 157 (325)
T PRK08699 111 RGGLRVILIHPAESMNLQ-AANSLLKVLEEPPPQVV-FLLVSHAADKVL 157 (325)
T ss_pred cCCceEEEEechhhCCHH-HHHHHHHHHHhCcCCCE-EEEEeCChHhCh
Confidence 467889999999987543 55666777777665443 444444333333
No 388
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.55 E-value=2.7 Score=51.10 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=33.8
Q ss_pred eEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccC
Q 005773 273 AVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (678)
Q Consensus 273 ~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~ 313 (678)
-+||||++|.+-+......+..++...|....+|+.|-+.+
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 48999999998766566788888898998899988887754
No 389
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=89.54 E-value=1.2 Score=49.89 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=18.2
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.+.+++.||+|+|||+. .-.+.+.+
T Consensus 216 p~GILLyGPPGTGKT~L-AKAlA~eL 240 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI-AKAVANSL 240 (512)
T ss_pred CcceEEECCCCCcHHHH-HHHHHHhh
Confidence 46799999999999975 33444433
No 390
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=89.45 E-value=2 Score=42.84 Aligned_cols=50 Identities=18% Similarity=0.101 Sum_probs=28.0
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 217 (678)
.|..+++.|++|+|||......+.+.+ .. +..++++.- -+...++.+...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~-----g~~~~~is~-e~~~~~i~~~~~ 68 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL-RD-----GDPVIYVTT-EESRESIIRQAA 68 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH-hc-----CCeEEEEEc-cCCHHHHHHHHH
Confidence 356788999999999975333333333 22 224666653 233344444433
No 391
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.36 E-value=3.3 Score=49.06 Aligned_cols=16 Identities=31% Similarity=0.219 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
.++|+.||+|+|||..
T Consensus 204 ~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAI 219 (731)
T ss_pred CceEEECCCCCCHHHH
Confidence 5899999999999975
No 392
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.31 E-value=1.9 Score=49.19 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=24.8
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhH
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~ 316 (678)
.....+|||||+|.|.... .+.+..++...+. .-++++.+|-+..+
T Consensus 117 ~g~~kVIIIDEad~Lt~~a-~naLLk~LEEP~~-~~ifILaTt~~~kl 162 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREA-FNALLKTLEEPPA-RVTFVLATTEPHKF 162 (624)
T ss_pred cCCceEEEEEChHhCCHHH-HHHHHHHhhccCC-CEEEEEecCChhhh
Confidence 3467899999999985322 2333444444322 23344545544333
No 393
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=89.23 E-value=1.4 Score=47.53 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=33.3
Q ss_pred CeeEEEEeCCcccccC-ChHHHHHHHHHHCCCC-ccEEEEEeccChhHH
Q 005773 271 DLAVLILDEADRLLEL-GFSAEIHELVRLCPKR-RQTMLFSATLTEDVD 317 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~-gf~~~i~~i~~~~~~~-~q~il~SATl~~~~~ 317 (678)
++++++||.++.+... .....+..+++.+... .|+|+.|-.+|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6779999999998754 4567777777766544 366766666665544
No 394
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=88.95 E-value=0.31 Score=60.45 Aligned_cols=94 Identities=27% Similarity=0.343 Sum_probs=72.4
Q ss_pred eEEEEeccHHHHHHHHHHHhhcC-CceeeccCCCC-----------HHHHHHHHHHHhcCCccEEEEcccccccCCCCCc
Q 005773 372 KVIIFSGTKQAAHRLKILFGLAA-LKAAELHGNLT-----------QAQRLEALELFRKQHVDFLIATDVAARGLDIIGV 439 (678)
Q Consensus 372 ~vLVF~~s~~~~~~l~~~L~~~~-~~~~~lhg~l~-----------~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v 439 (678)
..++|+.....+..+...+.... ..+..+.|.+. ...+..++..|.....++|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 45789988777777766665432 22222333221 2336788899999999999999999999999999
Q ss_pred cEEEEcCCCCChhHHHHHHhhcccCC
Q 005773 440 QTVINYACPRDLTSYVHRVGRTARAG 465 (678)
Q Consensus 440 ~~VI~~d~p~s~~~yiQr~GRagR~g 465 (678)
+.|+.++.|.....|+|+.||+-+.+
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999976543
No 395
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=88.90 E-value=0.46 Score=47.43 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=14.5
Q ss_pred EEEEcCCCchhhhhhhhchh
Q 005773 165 ICGSAITGSGKTAAFALPTL 184 (678)
Q Consensus 165 vl~~a~TGsGKT~~~~l~~l 184 (678)
+++.|+.|||||.. +..++
T Consensus 1 ~vv~G~pGsGKSt~-i~~~~ 19 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL-IKKLL 19 (234)
T ss_pred CEEEcCCCCCHHHH-HHHHH
Confidence 47899999999985 44444
No 396
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.87 E-value=1.1 Score=51.63 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=20.0
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCC
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~ 301 (678)
...++++||||||.|... -.+.+..+++..+.
T Consensus 119 ~~~~KViIIDEad~Lt~~-a~naLLK~LEePp~ 150 (620)
T PRK14948 119 QARWKVYVIDECHMLSTA-AFNALLKTLEEPPP 150 (620)
T ss_pred cCCceEEEEECccccCHH-HHHHHHHHHhcCCc
Confidence 356789999999988643 22334445554333
No 397
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.63 E-value=1.5 Score=48.95 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=31.5
Q ss_pred CeeEEEEeCCccccc-------CChHHHHHHHHHHC---CCCccEEEEEeccChhHHH
Q 005773 271 DLAVLILDEADRLLE-------LGFSAEIHELVRLC---PKRRQTMLFSATLTEDVDE 318 (678)
Q Consensus 271 ~i~~lVvDEah~ll~-------~gf~~~i~~i~~~~---~~~~q~il~SATl~~~~~~ 318 (678)
.-++|.+||.|.|.. +.-...+.+++..+ ...+++.++.||-.|++-+
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 456899999999863 22333445555443 3456788999998876543
No 398
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=88.62 E-value=0.73 Score=54.88 Aligned_cols=63 Identities=22% Similarity=0.248 Sum_probs=38.0
Q ss_pred EECchHHHHHHhccCccCCCCeeEEEEeCCcccc-------cCChHHHHHHH---HHHCCCCccEEEEEeccChh
Q 005773 251 VATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-------ELGFSAEIHEL---VRLCPKRRQTMLFSATLTED 315 (678)
Q Consensus 251 v~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-------~~gf~~~i~~i---~~~~~~~~q~il~SATl~~~ 315 (678)
|+.+++=+.++.. ...-....++.+||+|-+- +.-+...+..+ +.-++...|+++.+||..++
T Consensus 345 vgEaERqlrllFe--eA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 345 VGEAERQLRLLFE--EAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPD 417 (1080)
T ss_pred cCcHHHHHHHHHH--HHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcc
Confidence 4555555554543 1223467789999999443 22233444444 44456778999999997543
No 399
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=88.58 E-value=4.8 Score=42.85 Aligned_cols=144 Identities=22% Similarity=0.132 Sum_probs=60.8
Q ss_pred EEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHH-HHHHHHH---HHHHHhhcCCceeEEE-ecCCChHHHH
Q 005773 166 CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE-LAVQVHS---MIEKIAQFTDIRCCLV-VGGLSTKMQE 240 (678)
Q Consensus 166 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~-La~Q~~~---~~~~l~~~~~~~v~~~-~g~~~~~~~~ 240 (678)
|+.++.|+|||.+.++.++..+...+. ...++++ ||.. +...+.. .+..+... .+..... .....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~---~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----- 70 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP---GRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRK----- 70 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-----EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSE-----
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC---CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCc-----
Confidence 578899999998877777777665432 2345555 6554 4443222 22222222 1111111 00000
Q ss_pred HHhcCCCCEEEECchH--HHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccC--hhH
Q 005773 241 TALRSMPDIVVATPGR--MIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT--EDV 316 (678)
Q Consensus 241 ~~l~~~~dIiv~Tp~~--L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~--~~~ 316 (678)
..+.++..|.+.+-.. -...+.. ..+.++|+||+-.+.+.-+...+...+..... ...+++|.|+. ..+
T Consensus 71 ~~~~nG~~i~~~~~~~~~~~~~~~G------~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~~~~~~ 143 (384)
T PF03237_consen 71 IILPNGSRIQFRGADSPDSGDNIRG------FEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPNPGGWF 143 (384)
T ss_dssp EEETTS-EEEEES-----SHHHHHT------S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHH
T ss_pred EEecCceEEEEeccccccccccccc------cccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCCCCCce
Confidence 0013445566665321 1122222 36779999998887654344443333333222 22225555443 344
Q ss_pred HHHHHHhcCC
Q 005773 317 DELIKLSLTK 326 (678)
Q Consensus 317 ~~l~~~~~~~ 326 (678)
..+.......
T Consensus 144 ~~~~~~~~~~ 153 (384)
T PF03237_consen 144 YEIFQRNLDD 153 (384)
T ss_dssp HHHHHHHHCT
T ss_pred eeeeehhhcC
Confidence 4444444443
No 400
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.52 E-value=5.8 Score=40.60 Aligned_cols=125 Identities=19% Similarity=0.255 Sum_probs=68.9
Q ss_pred HHHHhcCC-----CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEE
Q 005773 156 IPLALTGR-----DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV 230 (678)
Q Consensus 156 i~~ll~g~-----dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~ 230 (678)
+|.++.|+ -+++.||+|+||+.. .-++.. . ...+.+-+.+..|+..|.-.-.+|.+
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYL--AKAVAT---E-----AnSTFFSvSSSDLvSKWmGESEkLVk--------- 215 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYL--AKAVAT---E-----ANSTFFSVSSSDLVSKWMGESEKLVK--------- 215 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHH--HHHHHh---h-----cCCceEEeehHHHHHHHhccHHHHHH---------
Confidence 47788874 589999999999954 222221 0 11356777777886655433333211
Q ss_pred ecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCCh------HHHH-HHHHHHC----
Q 005773 231 VGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF------SAEI-HELVRLC---- 299 (678)
Q Consensus 231 ~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf------~~~i-~~i~~~~---- 299 (678)
.|..+.+. ..-++|.|||+|.+...+- ..+| .+++-.+
T Consensus 216 -------------------------nLFemARe------~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG 264 (439)
T KOG0739|consen 216 -------------------------NLFEMARE------NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVG 264 (439)
T ss_pred -------------------------HHHHHHHh------cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccc
Confidence 12222222 1345899999998764221 1111 2222222
Q ss_pred CCCccEEEEEeccChhHHHH-HHHhcCCCeEE
Q 005773 300 PKRRQTMLFSATLTEDVDEL-IKLSLTKPLRL 330 (678)
Q Consensus 300 ~~~~q~il~SATl~~~~~~l-~~~~~~~p~~~ 330 (678)
..+--++++.||..|.+.+- ++.-+.+.+.+
T Consensus 265 ~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI 296 (439)
T KOG0739|consen 265 NDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI 296 (439)
T ss_pred cCCCceEEEecCCCchhHHHHHHHHhhcceec
Confidence 12345899999988876543 44444444443
No 401
>PHA00729 NTP-binding motif containing protein
Probab=88.45 E-value=4.3 Score=40.29 Aligned_cols=74 Identities=12% Similarity=0.218 Sum_probs=38.4
Q ss_pred CEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccC-ChH----HHHHHHHHHCCCCccEEEEEeccChhHHHHHHH
Q 005773 248 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-GFS----AEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (678)
Q Consensus 248 dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~-gf~----~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~ 322 (678)
..++.+...|+..+.... -....+.+||||++-.-+.. .+. .....+...+....+++.+...-+.++...+..
T Consensus 60 ~~~fid~~~Ll~~L~~a~-~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAI-DNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHH-hcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 355555555655554321 11234578999995432211 111 122234444444566777777766666666654
No 402
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=88.45 E-value=1.9 Score=48.88 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=66.8
Q ss_pred cCCceEEEEeccHHHH----HHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc-cccCCCCCccEE
Q 005773 368 TFTSKVIIFSGTKQAA----HRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTV 442 (678)
Q Consensus 368 ~~~~~vLVF~~s~~~~----~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~-~~GlDi~~v~~V 442 (678)
..+..+.+-.||--.| ..+..+|...|+.+..+.|.+....|..++....+|.++++|.|-++ ...+++.+..+|
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLV 388 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLV 388 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEE
Confidence 3466888999996544 55666777789999999999999999999999999999999999876 578999999998
Q ss_pred EEc
Q 005773 443 INY 445 (678)
Q Consensus 443 I~~ 445 (678)
|.-
T Consensus 389 IiD 391 (677)
T COG1200 389 IID 391 (677)
T ss_pred EEe
Confidence 854
No 403
>PRK11823 DNA repair protein RadA; Provisional
Probab=88.41 E-value=1.5 Score=48.58 Aligned_cols=51 Identities=25% Similarity=0.274 Sum_probs=31.8
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
|.-+++.|++|+|||+. ++-+...+.. .+.+++++.- .+...|+......+
T Consensus 80 Gs~~lI~G~pG~GKTtL-~lq~a~~~a~-----~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTL-LLQVAARLAA-----AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHH-HHHHHHHHHh-----cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 45677999999999975 4444444332 1346788774 34456666555543
No 404
>PRK13764 ATPase; Provisional
Probab=88.41 E-value=0.47 Score=53.93 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=20.7
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
.+++++++|+||||||+. +..++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 367899999999999975 555665553
No 405
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.40 E-value=2.1 Score=50.71 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
++.+++.||+|+|||+.
T Consensus 212 ~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CceEEEECCCCCChHHH
Confidence 57899999999999974
No 406
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=88.40 E-value=1.1 Score=50.52 Aligned_cols=68 Identities=29% Similarity=0.469 Sum_probs=55.6
Q ss_pred EEEEeccHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcc-----ccccc-CCCCCccE
Q 005773 373 VIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAARG-LDIIGVQT 441 (678)
Q Consensus 373 vLVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~G-lDi~~v~~ 441 (678)
+||++||++.|.++++.+... ++.+..++|+++...+...++. | .+|||+|+ .+.+| +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998876532 5778999999998887755554 6 89999996 45566 89999999
Q ss_pred EEE
Q 005773 442 VIN 444 (678)
Q Consensus 442 VI~ 444 (678)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 884
No 407
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=88.38 E-value=0.84 Score=48.54 Aligned_cols=63 Identities=27% Similarity=0.220 Sum_probs=39.9
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHH
Q 005773 137 LRACEALGYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (678)
Q Consensus 137 ~~~l~~~g~~~~~~iQ~~~i~~ll~-g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~L 208 (678)
+..+...|+ +++.+...+..+.. +.+++++|+||||||.. +-.++..+ . +..+++++--+.+|
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i-~-----~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALV-A-----PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccC-C-----CCCcEEEECCccee
Confidence 444455555 45677777766555 56999999999999974 33333332 1 22356777777776
No 408
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=88.31 E-value=1.8 Score=41.17 Aligned_cols=53 Identities=23% Similarity=0.388 Sum_probs=41.8
Q ss_pred CCeeEEEEeCCcccccCChH--HHHHHHHHHCCCCccEEEEEeccChhHHHHHHH
Q 005773 270 DDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQTMLFSATLTEDVDELIKL 322 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~--~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~ 322 (678)
..+++||+||.-..+.+|+. +.+..+++..|...-+|+..-..++.+.+.+.+
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 36899999999998887754 667778887777777777777788888877765
No 409
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=88.24 E-value=1.1 Score=44.05 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=25.0
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~ 308 (678)
..+.+++|+||||.|-. |-...+...+.......++.+.
T Consensus 111 ~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFala 149 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALA 149 (333)
T ss_pred CCceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhh
Confidence 35678999999999864 3455555555555554444433
No 410
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=88.19 E-value=1.6 Score=45.74 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=27.2
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 217 (678)
..+|++||.|+|||..+- +| ....+...-+.+=+.-|.+-...+...++
T Consensus 163 pSmIlWGppG~GKTtlAr--li----a~tsk~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLAR--LI----ASTSKKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CceEEecCCCCchHHHHH--HH----HhhcCCCceEEEEEeccccchHHHHHHHH
Confidence 379999999999997422 22 11111222345555555555554444444
No 411
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=88.15 E-value=0.92 Score=46.23 Aligned_cols=112 Identities=17% Similarity=0.209 Sum_probs=56.0
Q ss_pred HHHHHhcC----CCEE-EEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEE
Q 005773 155 CIPLALTG----RDIC-GSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCL 229 (678)
Q Consensus 155 ~i~~ll~g----~dvl-~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~ 229 (678)
.+..+|.| ..+. ++|+.|||||...+..+++..+.......+.+|++|.-......+ .+.+++...+.
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~---Rl~~i~~~~~~---- 98 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPE---RLQQIAERFGL---- 98 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HH---HHHHHHHHTTS----
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHH---HHHHHhhcccc----
Confidence 56667765 3455 999999999954332333333322222345678888755543221 22222221111
Q ss_pred EecCCChHHHHHHhcCCCCEEEE---CchHHHHHHhccCc-cCCCCeeEEEEeCCcccc
Q 005773 230 VVGGLSTKMQETALRSMPDIVVA---TPGRMIDHLRNSMS-VDLDDLAVLILDEADRLL 284 (678)
Q Consensus 230 ~~g~~~~~~~~~~l~~~~dIiv~---Tp~~L~~~l~~~~~-~~l~~i~~lVvDEah~ll 284 (678)
.. ...+. .|.|. +...|...+..... +.-.++++||||-+-.+.
T Consensus 99 -----~~---~~~l~---~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalf 146 (256)
T PF08423_consen 99 -----DP---EEILD---NIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALF 146 (256)
T ss_dssp ------H---HHHHH---TEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHH
T ss_pred -----cc---chhhh---ceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHH
Confidence 11 11222 23333 34444444432111 112479999999998764
No 412
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=88.10 E-value=5.1 Score=41.13 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=21.4
Q ss_pred HHHHHhc-C--CCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 155 CIPLALT-G--RDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 155 ~i~~ll~-g--~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
.++.+.. + +++++.|++|+|||+. +-++..++
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKttl--~~~l~~~~ 135 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKTTL--LRDLARIL 135 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHHHH--HHHHhCcc
Confidence 3555554 3 5789999999999974 44444443
No 413
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=88.09 E-value=0.56 Score=52.44 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=40.9
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEec
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g 232 (678)
.++++.|+||||||..+.+|.+-. . +..++|+=|--+|........++ .+.+|.++.-
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~-----~~s~iV~D~KgEl~~~t~~~r~~----~G~~V~vldp 102 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---Y-----PGSMIVTDPKGELYEKTAGYRKK----RGYKVYVLDP 102 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---c-----cCCEEEEECCCcHHHHHHHHHHH----CCCEEEEeec
Confidence 479999999999999999997632 1 12478899999997766655544 2445554443
No 414
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.09 E-value=0.54 Score=52.87 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=32.1
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 147 KPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll----~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
+|..||...+..+. .|+-.|+..|||+|||+..+-.++..|
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 48999988877654 489899999999999987555555544
No 415
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=88.02 E-value=2.4 Score=49.29 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=23.2
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 307 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il 307 (678)
....+++||||||.|... -...+...+...|....+|+
T Consensus 116 ~g~~KV~IIDEa~~LT~~-A~NALLKtLEEPP~~tifIL 153 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKS-AFNALLKTLEEPPKHVIFIL 153 (725)
T ss_pred cCCCEEEEEEChhhCCHH-HHHHHHHHhhcCCCceEEEE
Confidence 357889999999987643 23344555555444443333
No 416
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=87.85 E-value=0.3 Score=46.57 Aligned_cols=44 Identities=23% Similarity=0.182 Sum_probs=27.9
Q ss_pred HhcCCCCEEEECchHHHHHHhccCcc-CCCCeeEEEEeCCccccc
Q 005773 242 ALRSMPDIVVATPGRMIDHLRNSMSV-DLDDLAVLILDEADRLLE 285 (678)
Q Consensus 242 ~l~~~~dIiv~Tp~~L~~~l~~~~~~-~l~~i~~lVvDEah~ll~ 285 (678)
.....+||||+++..|++-....... ....-.+|||||||.|.+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 34456899999999887653322111 123446999999999865
No 417
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=87.85 E-value=2 Score=43.82 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=23.5
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
.|.-+++.|++|+|||+..+..+.+.+ .. +.++++++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a-~~-----Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA-SR-----GNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-hC-----CCcEEEEE
Confidence 346688999999999975333333333 22 33567776
No 418
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=87.77 E-value=3.5 Score=41.31 Aligned_cols=39 Identities=31% Similarity=0.259 Sum_probs=25.1
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcC
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~P 204 (678)
.|.-++++|++|+|||.. ++-++..+.... +.++++++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~-~~~~~~~~~~~~----g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAF-ALNIAENIAKKQ----GKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHHhC----CCceEEEeC
Confidence 456788999999999965 444444433321 335777773
No 419
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=87.74 E-value=2.8 Score=42.12 Aligned_cols=95 Identities=9% Similarity=0.131 Sum_probs=64.4
Q ss_pred HHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC----ccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhh
Q 005773 385 RLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH----VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGR 460 (678)
Q Consensus 385 ~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~----~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GR 460 (678)
.|...+.. ++.+..++|+.+... -.+.++. ..|+|+=+.++||+.++|..+..+.--+.+..++.||.=-
T Consensus 102 ~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRw 175 (239)
T PF10593_consen 102 ELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRW 175 (239)
T ss_pred HHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhc
Confidence 33334443 577888887655433 2344343 7799999999999999999999999999999999998322
Q ss_pred c-ccCCCceEEEEEeeCCcHHHHHHH
Q 005773 461 T-ARAGREGYAVTFVTDNDRSLLKAI 485 (678)
Q Consensus 461 a-gR~g~~G~~i~l~~~~d~~~l~~i 485 (678)
- .|.|-.+.|.++.++.-...+..|
T Consensus 176 FGYR~gY~dl~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 176 FGYRPGYEDLCRIYMPEELYDWFRHI 201 (239)
T ss_pred ccCCcccccceEEecCHHHHHHHHHH
Confidence 2 255556677777765444444433
No 420
>PRK14701 reverse gyrase; Provisional
Probab=87.55 E-value=2.5 Score=53.87 Aligned_cols=61 Identities=20% Similarity=0.161 Sum_probs=53.4
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc------CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLA------ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~------~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~ 429 (678)
.+.++||.+||+..+.++...|... ++.+..+||+++..++..+++.+.+|..+|||+|.-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999998887752 467789999999999999999999999999999974
No 421
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.55 E-value=0.38 Score=49.33 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=18.7
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
...|+++.||||||||+. .-.|.++
T Consensus 96 ~KSNILLiGPTGsGKTlL--AqTLAk~ 120 (408)
T COG1219 96 SKSNILLIGPTGSGKTLL--AQTLAKI 120 (408)
T ss_pred eeccEEEECCCCCcHHHH--HHHHHHH
Confidence 345899999999999974 3445444
No 422
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=87.49 E-value=1.4 Score=51.18 Aligned_cols=88 Identities=19% Similarity=0.206 Sum_probs=64.5
Q ss_pred hhHHHHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhc-CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccccc
Q 005773 355 VNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431 (678)
Q Consensus 355 ~~~~~~l~~~~~--~~~~~~vLVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~ 431 (678)
+.+.++++.++. -..+..+||.+|......++...|... |.++..+|++++..+|.....+..+|+.+|+|.|..+-
T Consensus 228 SGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl 307 (730)
T COG1198 228 SGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL 307 (730)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh
Confidence 334444444433 123578999999887777777666543 78999999999999999999999999999999997642
Q ss_pred ccCCCCCccEEE
Q 005773 432 RGLDIIGVQTVI 443 (678)
Q Consensus 432 ~GlDi~~v~~VI 443 (678)
=+-+++...||
T Consensus 308 -F~Pf~~LGLII 318 (730)
T COG1198 308 -FLPFKNLGLII 318 (730)
T ss_pred -cCchhhccEEE
Confidence 13344555555
No 423
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=87.48 E-value=2.7 Score=47.90 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=18.9
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHH
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRL 298 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~ 298 (678)
....+++||||+|.|.... .+.+...+..
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a-~naLLK~LEe 145 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSA-FNALLKTIEE 145 (563)
T ss_pred cCCCEEEEEEChhhcCHHH-HHHHHHhhcc
Confidence 4578899999999886532 2334444444
No 424
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.47 E-value=3.7 Score=45.50 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=22.7
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEE
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 307 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il 307 (678)
...+++||||+|.|.... .+.+..++...+....+|+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEE
Confidence 567899999999886432 3344555555444443343
No 425
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=87.43 E-value=2 Score=46.70 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
+.+++.||+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 5799999999999975
No 426
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=87.17 E-value=7.8 Score=44.69 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=61.9
Q ss_pred CceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc------cccCCCCCccEEE
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIGVQTVI 443 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~------~~GlDi~~v~~VI 443 (678)
++.+||.+|+...+......|...|+.+..+||+++..++..++.....|..++|+.|.-- ..-+....+.+||
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iV 132 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVA 132 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEE
Confidence 4678999999999988888888899999999999999999999999999999999887432 1234445677777
Q ss_pred E
Q 005773 444 N 444 (678)
Q Consensus 444 ~ 444 (678)
.
T Consensus 133 i 133 (591)
T TIGR01389 133 V 133 (591)
T ss_pred E
Confidence 4
No 427
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=87.13 E-value=2.4 Score=44.53 Aligned_cols=40 Identities=10% Similarity=0.153 Sum_probs=27.0
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEe
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 310 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SA 310 (678)
....+++|||+||.|... -.+.+.+++...| ..-+|++|.
T Consensus 122 ~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEEC
Confidence 357899999999998643 4456667777766 554444443
No 428
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=87.09 E-value=2.7 Score=42.01 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=29.6
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
|.-+++.|++|+|||......+.+.+ .+ +.+++++.=- +-..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~-~~-----g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGAL-KQ-----GKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH-hC-----CCEEEEEEcC-CCHHHHHHHHHHC
Confidence 45678999999999975433333333 22 3356666543 3334555555543
No 429
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=86.98 E-value=0.81 Score=52.33 Aligned_cols=58 Identities=22% Similarity=0.118 Sum_probs=43.6
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEec
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG 232 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g 232 (678)
.++++.||||||||..+++|.|-.. +.-++|+=|--++........++ .|..|.++..
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~--------~~S~VV~DpKGEl~~~Ta~~R~~----~G~~V~vfdP 216 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW--------EDSVVVHDIKLENYELTSGWREK----QGQKVFVWEP 216 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC--------CCCEEEEeCcHHHHHHHHHHHHH----CCCeEEEEeC
Confidence 4799999999999999999998553 23489999999998766655554 3555555543
No 430
>PRK05973 replicative DNA helicase; Provisional
Probab=86.96 E-value=0.62 Score=46.71 Aligned_cols=83 Identities=18% Similarity=0.123 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHH---------HHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEE
Q 005773 130 LNLSRPLLRACEALGYSKPTPIQAACI---------PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200 (678)
Q Consensus 130 l~l~~~l~~~l~~~g~~~~~~iQ~~~i---------~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vL 200 (678)
.+++..+-+....-||...+-+...+- --+..|.-+++.|++|+|||+..+..+.+.+ .. +.+++
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~~-----Ge~vl 96 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM-KS-----GRTGV 96 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-hc-----CCeEE
Confidence 345556656666667766544443332 2223356688999999999975433333333 22 33467
Q ss_pred EEcCcHHHHHHHHHHHHHH
Q 005773 201 ILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 201 Il~Ptr~La~Q~~~~~~~l 219 (678)
|++-- +-..|+.+.+..+
T Consensus 97 yfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 97 FFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred EEEEe-CCHHHHHHHHHHc
Confidence 76533 3345666666654
No 431
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=86.77 E-value=2.2 Score=44.50 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=14.1
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
.++++.||+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4689999999999974
No 432
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=86.76 E-value=1.8 Score=47.60 Aligned_cols=69 Identities=17% Similarity=0.271 Sum_probs=55.1
Q ss_pred eEEEEeccHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc-----cccc----CCCCC
Q 005773 372 KVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AARG----LDIIG 438 (678)
Q Consensus 372 ~vLVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~-----~~~G----lDi~~ 438 (678)
-.|||+||++.|.++.+.|... ++.+..|.|+|....+.+++.+ .-.|+|||.- +..+ =++..
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 4799999999999999998754 8999999999999999999886 6679999962 1111 15567
Q ss_pred ccEEEE
Q 005773 439 VQTVIN 444 (678)
Q Consensus 439 v~~VI~ 444 (678)
|++.|.
T Consensus 341 vkcLVl 346 (731)
T KOG0347|consen 341 VKCLVL 346 (731)
T ss_pred ceEEEE
Confidence 777664
No 433
>PRK09087 hypothetical protein; Validated
Probab=86.73 E-value=1.6 Score=43.64 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=24.6
Q ss_pred EEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccC
Q 005773 274 VLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (678)
Q Consensus 274 ~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~ 313 (678)
+|+||++|.+. .-...+..+++.+......++++++.+
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~ 127 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLW 127 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 79999999763 235567777776665444455555543
No 434
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=86.69 E-value=0.56 Score=44.94 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=27.5
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCC-CccEEEEEe
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTMLFSA 310 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~-~~q~il~SA 310 (678)
..-.++++||...-++......+..++..+.. ..++|+.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 45679999999998876666666666554433 355565554
No 435
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.69 E-value=1.1 Score=47.52 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
+|+++.||+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 7999999999999975
No 436
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=86.68 E-value=15 Score=35.55 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=53.1
Q ss_pred CCceEEEEeccHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc-----c-cccCCCCC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----A-ARGLDIIG 438 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~-----~-~~GlDi~~ 438 (678)
.+.++||.+|++..+.++...+.. .++.+..++|+.+.......+. +...|+|+|.- + ..-+++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 456899999999998887665543 3778889999988766554433 67789999952 2 22356778
Q ss_pred ccEEEEcC
Q 005773 439 VQTVINYA 446 (678)
Q Consensus 439 v~~VI~~d 446 (678)
+++||.=.
T Consensus 144 l~~lIvDE 151 (203)
T cd00268 144 VKYLVLDE 151 (203)
T ss_pred CCEEEEeC
Confidence 88887543
No 437
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=86.62 E-value=2.1 Score=45.78 Aligned_cols=23 Identities=30% Similarity=0.171 Sum_probs=16.6
Q ss_pred CEEEEcCCCchhhhhhhhchhHHH
Q 005773 164 DICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.+++.||.|+|||.+ ...+...+
T Consensus 38 ~~Ll~G~~G~GKt~~-a~~la~~l 60 (355)
T TIGR02397 38 AYLFSGPRGTGKTSI-ARIFAKAL 60 (355)
T ss_pred EEEEECCCCCCHHHH-HHHHHHHh
Confidence 478999999999975 34444444
No 438
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=86.52 E-value=3.5 Score=46.43 Aligned_cols=130 Identities=17% Similarity=0.170 Sum_probs=80.2
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH-hhcCCce-eEEEecCCChHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI-AQFTDIR-CCLVVGGLSTKMQ 239 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l-~~~~~~~-v~~~~g~~~~~~~ 239 (678)
.|-.++.-|---|||. |+.|++..++.. ..+.++.+++.-+..+.-+++.+..- .++.+-+ +....+
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~s---~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~------- 270 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLKN---IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD------- 270 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHHh---hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC-------
Confidence 4667788899999998 489999888874 45678999999999888776665432 2222211 111111
Q ss_pred HHHhcCCCCEEEECchHHHH----HHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHC-CCCccEEEEEeccC
Q 005773 240 ETALRSMPDIVVATPGRMID----HLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFSATLT 313 (678)
Q Consensus 240 ~~~l~~~~dIiv~Tp~~L~~----~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~-~~~~q~il~SATl~ 313 (678)
-.|.+.-|+.=.. .-.+.....-..+.+++|||||-+-. +.+..|+-.+ .++.++|+.|.|-+
T Consensus 271 -------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~----~a~~tilgfm~q~~~KiIfISS~Ns 338 (668)
T PHA03372 271 -------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK----DAFNTILGFLAQNTTKIIFISSTNT 338 (668)
T ss_pred -------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH----HHHHHhhhhhcccCceEEEEeCCCC
Confidence 1344443322100 01222234456788999999996542 3344454444 35788999998864
No 439
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=86.45 E-value=2.2 Score=45.98 Aligned_cols=51 Identities=25% Similarity=0.280 Sum_probs=31.0
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
|.-+++.|++|+|||+. ++-+...+... +.+++++.-. +...|+......+
T Consensus 82 GslvLI~G~pG~GKStL-llq~a~~~a~~-----g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTL-LLQVAARLAKR-----GGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHH-HHHHHHHHHhc-----CCeEEEEECC-cCHHHHHHHHHHc
Confidence 45678999999999975 44444443322 2467887654 3345655544443
No 440
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=86.40 E-value=1.1 Score=48.12 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=19.4
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.|+-+++.|++|+|||.. +..+.+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL-~~~i~~~I 192 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL-LQKIAQAI 192 (415)
T ss_pred CCCEEEEECCCCCChhHH-HHHHHHhh
Confidence 578899999999999975 33344444
No 441
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=86.25 E-value=2.7 Score=48.21 Aligned_cols=40 Identities=33% Similarity=0.433 Sum_probs=26.4
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~ 308 (678)
+.+-.++|+|||..-++..-...+.+.+..+.+.+.+++.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiI 520 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII 520 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEE
Confidence 3444689999999888876677777766654455434443
No 442
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=86.18 E-value=0.38 Score=44.60 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=62.6
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l 243 (678)
.+.+.|++|+|||+. ++-+.+.|....-+ -.-|++|- ++.=.+..++++..+..|.... .+.
T Consensus 7 ki~ITG~PGvGKtTl-~~ki~e~L~~~g~k----vgGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~~---la~ 68 (179)
T COG1618 7 KIFITGRPGVGKTTL-VLKIAEKLREKGYK----VGGFITPE----------VREGGKRIGFKIVDLATGEEGI---LAR 68 (179)
T ss_pred EEEEeCCCCccHHHH-HHHHHHHHHhcCce----eeeEEeee----------eecCCeEeeeEEEEccCCceEE---EEE
Confidence 478999999999976 67777777544321 12455653 2222233456655554332110 000
Q ss_pred cCCCCEEEECchHHHHHHhccCcc----CCCCeeEEEEeCCcccc--cCChHHHHHHHHHHC
Q 005773 244 RSMPDIVVATPGRMIDHLRNSMSV----DLDDLAVLILDEADRLL--ELGFSAEIHELVRLC 299 (678)
Q Consensus 244 ~~~~dIiv~Tp~~L~~~l~~~~~~----~l~~i~~lVvDEah~ll--~~gf~~~i~~i~~~~ 299 (678)
.+....-|+-|+...+.+...... .+..-+++||||.--|- ...|...+.+++..-
T Consensus 69 ~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~ 130 (179)
T COG1618 69 VGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSG 130 (179)
T ss_pred cCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCC
Confidence 011223344444444333321110 12345799999999775 445777777776543
No 443
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.03 E-value=8.6 Score=42.80 Aligned_cols=90 Identities=19% Similarity=0.279 Sum_probs=66.9
Q ss_pred CceEEEEeccHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcc-----ccc-ccCCCCCc
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAA-RGLDIIGV 439 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~GlDi~~v 439 (678)
+..+||.+||++.|.++...+... ++++.+++|+.+...+.+.++ .-++|+|+|. .+. --+|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHHHHHHcCCccccce
Confidence 457999999999999998877654 566889999999887766665 3578999996 333 34688899
Q ss_pred cEEEE--------cCCCCChhHHHHHHhhccc
Q 005773 440 QTVIN--------YACPRDLTSYVHRVGRTAR 463 (678)
Q Consensus 440 ~~VI~--------~d~p~s~~~yiQr~GRagR 463 (678)
.+||- .++-..+...++.++|..|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 99883 2333356677777777766
No 444
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=86.01 E-value=0.81 Score=44.65 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=23.1
Q ss_pred EEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHH
Q 005773 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (678)
Q Consensus 165 vl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~L 208 (678)
++++||||||||+. +..++..+... ...+++.+--..++
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~~~~----~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYINKN----KTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHhhhc----CCcEEEEEcCCccc
Confidence 67999999999986 34445544321 12345555444343
No 445
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.98 E-value=8.5 Score=42.84 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=68.9
Q ss_pred CCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCC
Q 005773 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSM 246 (678)
Q Consensus 171 TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~ 246 (678)
.+.||+..-++.+.+.+-.. ..|.+||.+-+.+-|.|++..+. .+.++++..++|..+.......+ .+.
T Consensus 366 vF~gse~~K~lA~rq~v~~g----~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g~ 438 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG----FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIGK 438 (593)
T ss_pred eeeecchhHHHHHHHHHhcc----CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhccC
Confidence 46677766555555554322 45678999999999999888876 45789999999997765554332 345
Q ss_pred CCEEEECchHHHHHHhccCccCCCCeeEEEEeCCc
Q 005773 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (678)
Q Consensus 247 ~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah 281 (678)
..|+||| +.|.+ .+++.++.+||-+..-
T Consensus 439 IwvLicT-----dll~R--GiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 439 IWVLICT-----DLLAR--GIDFKGVNLVINYDFP 466 (593)
T ss_pred eeEEEeh-----hhhhc--cccccCcceEEecCCC
Confidence 6899999 34555 5788999999985543
No 446
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.96 E-value=2.6 Score=49.04 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=37.1
Q ss_pred eEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccC
Q 005773 273 AVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (678)
Q Consensus 273 ~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~ 313 (678)
-++|+|.-|.+.+.-....+..+++..|.+...++.|-+-|
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 48999999999998888889999999999999999998765
No 447
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.91 E-value=8.9 Score=42.83 Aligned_cols=77 Identities=12% Similarity=0.153 Sum_probs=63.5
Q ss_pred CceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc-c------ccC-CCCCccE
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-A------RGL-DIIGVQT 441 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~-~------~Gl-Di~~v~~ 441 (678)
++.+||.+|++..+......|...++.+..++|+.+..++..++..+..|..+||++|.-. . ..+ ....+.+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 4678999999999998888898999999999999999999999999999999999998632 1 222 4567888
Q ss_pred EEEcC
Q 005773 442 VINYA 446 (678)
Q Consensus 442 VI~~d 446 (678)
||.-.
T Consensus 131 iViDE 135 (470)
T TIGR00614 131 IAVDE 135 (470)
T ss_pred EEEeC
Confidence 77543
No 448
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=85.87 E-value=1.8 Score=41.17 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=41.9
Q ss_pred CCeeEEEEeCCcccccCChH--HHHHHHHHHCCCCccEEEEEeccChhHHHHHH
Q 005773 270 DDLAVLILDEADRLLELGFS--AEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~--~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~ 321 (678)
..+++||+||.-..++.|+. ..+..+++..|...-+|+..-.+|+.+.+.+.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 57899999999999988865 56777888888877788888888888776654
No 449
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=85.58 E-value=4.4 Score=42.57 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=25.5
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEec
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SAT 311 (678)
....+++|||+||.|... -.+.+...+...|...-+| +.++
T Consensus 91 ~~~~kv~iI~~ad~m~~~-a~naLLK~LEepp~~t~~i-l~~~ 131 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQ-AQNAFLKTIEEPPKGVFII-LLCE 131 (313)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHhcCCCCCeEEE-EEeC
Confidence 457889999999998643 2345555666544444444 4444
No 450
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=85.55 E-value=2.8 Score=38.48 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=27.2
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEec
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SAT 311 (678)
.+-+++++||.-.-++......+..++..+. .+++++.-
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th 125 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSH 125 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEEC
Confidence 3456899999998888777777777776652 35555443
No 451
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=85.45 E-value=6.9 Score=41.45 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=26.6
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
....+++||||||.|... -.+.+.++++..|....+|+.|
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEe
Confidence 457789999999998643 3455666666655555555533
No 452
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.41 E-value=2.4 Score=47.39 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=23.5
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEec
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SAT 311 (678)
.....++||||||.|....+ +.+...+...|.. -++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~-~v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPR-TIFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCC-eEEEEEEC
Confidence 45788999999998764333 3344444443333 33444333
No 453
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=85.37 E-value=2.3 Score=43.09 Aligned_cols=20 Identities=25% Similarity=0.049 Sum_probs=17.0
Q ss_pred HhcCCCEEEEcCCCchhhhh
Q 005773 159 ALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 159 ll~g~dvl~~a~TGsGKT~~ 178 (678)
+-.|+.+++.|+.|+|||+.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34688999999999999964
No 454
>PF12846 AAA_10: AAA-like domain
Probab=85.27 E-value=0.85 Score=47.20 Aligned_cols=43 Identities=33% Similarity=0.401 Sum_probs=30.4
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~ 210 (678)
++++++.|+||||||.+. ..++..++.. +..++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~-~~l~~~~~~~-----g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL-KNLLEQLIRR-----GPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHHHc-----CCCEEEEcCCchHHH
Confidence 367999999999999874 4555555543 345788877766544
No 455
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=85.19 E-value=6.8 Score=45.45 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=53.5
Q ss_pred CceEEEEeccHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcc-----cccc-cCCCCC
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAAR-GLDIIG 438 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~-GlDi~~ 438 (678)
...+||.|||+..+.+++..+... ++.+..+||+.+...+...+. +...|+|+|. .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~----~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR----QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 457999999999999887766532 788899999988766554442 4578999995 3333 478889
Q ss_pred ccEEEEc
Q 005773 439 VQTVINY 445 (678)
Q Consensus 439 v~~VI~~ 445 (678)
+.+||.=
T Consensus 150 l~~lVlD 156 (629)
T PRK11634 150 LSGLVLD 156 (629)
T ss_pred ceEEEec
Confidence 9988843
No 456
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=85.17 E-value=1.7 Score=43.11 Aligned_cols=45 Identities=22% Similarity=0.031 Sum_probs=24.7
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr 206 (678)
|.-+.+.|++|+|||...+..+...+....-......++++..-.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 345679999999999753333333221111011124677776643
No 457
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=85.08 E-value=1 Score=47.30 Aligned_cols=18 Identities=44% Similarity=0.444 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.+.+++++|+||||||+.
T Consensus 143 ~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTF 160 (308)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578999999999999974
No 458
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=85.03 E-value=1.1 Score=55.55 Aligned_cols=57 Identities=26% Similarity=0.321 Sum_probs=44.2
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 218 (678)
.+.+++|.|..|||||.+...-++..|+... ......+|||+.|+..+..+...+..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~-~~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG-PLDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC-CCChhHeeeeeccHHHHHHHHHHHHH
Confidence 4679999999999999886666777666542 23456799999999998887766543
No 459
>CHL00176 ftsH cell division protein; Validated
Probab=84.60 E-value=5 Score=46.42 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=27.0
Q ss_pred eeEEEEeCCcccccC-------C---hHHHHHHHHHHC---CCCccEEEEEeccChhH
Q 005773 272 LAVLILDEADRLLEL-------G---FSAEIHELVRLC---PKRRQTMLFSATLTEDV 316 (678)
Q Consensus 272 i~~lVvDEah~ll~~-------g---f~~~i~~i~~~~---~~~~q~il~SATl~~~~ 316 (678)
-.+|+|||+|.+... + ....+..++..+ .....++++.||-.++.
T Consensus 276 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 276 PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDI 333 (638)
T ss_pred CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHh
Confidence 358999999998521 1 223344454443 23456788888866543
No 460
>PRK06904 replicative DNA helicase; Validated
Probab=84.57 E-value=5.8 Score=44.26 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=56.2
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecC--CChHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGG--LSTKMQ 239 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~--~~~~~~ 239 (678)
|.=+++.|.||.|||.. ++-+...+... .+..|+|++.- .-..|+...+-. ...++....+..+ .+....
T Consensus 221 G~LiiIaarPg~GKTaf-alnia~~~a~~----~g~~Vl~fSlE-Ms~~ql~~Rlla--~~s~v~~~~i~~g~~l~~~e~ 292 (472)
T PRK06904 221 SDLIIVAARPSMGKTTF-AMNLCENAAMA----SEKPVLVFSLE-MPAEQIMMRMLA--SLSRVDQTKIRTGQNLDQQDW 292 (472)
T ss_pred CcEEEEEeCCCCChHHH-HHHHHHHHHHh----cCCeEEEEecc-CCHHHHHHHHHH--hhCCCCHHHhccCCCCCHHHH
Confidence 44567899999999964 55554443221 12346776543 334455444332 2233333222222 222221
Q ss_pred H------HHhcCCCCEEEE-----CchHHHHHHhccCccCCCCeeEEEEeCCccccc
Q 005773 240 E------TALRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (678)
Q Consensus 240 ~------~~l~~~~dIiv~-----Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~ 285 (678)
. ..+...+.+.|- |+..+...++... .....+++||||=.+.|..
T Consensus 293 ~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 293 AKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY-RENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEecHHhcCC
Confidence 1 123234456663 4444443333210 1112578999998887753
No 461
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.54 E-value=18 Score=39.25 Aligned_cols=130 Identities=20% Similarity=0.204 Sum_probs=76.4
Q ss_pred EEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEE-cCc-HHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHH
Q 005773 165 ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL-TPT-RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (678)
Q Consensus 165 vl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl-~Pt-r~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (678)
++.+|--|||||++ +--+..++ ... +.+++++ |-| |..| +++++.++...++.+.....+.++..-
T Consensus 103 ImmvGLQGsGKTTt-~~KLA~~l-kk~----~~kvllVaaD~~RpAA---~eQL~~La~q~~v~~f~~~~~~~Pv~I--- 170 (451)
T COG0541 103 ILMVGLQGSGKTTT-AGKLAKYL-KKK----GKKVLLVAADTYRPAA---IEQLKQLAEQVGVPFFGSGTEKDPVEI--- 170 (451)
T ss_pred EEEEeccCCChHhH-HHHHHHHH-HHc----CCceEEEecccCChHH---HHHHHHHHHHcCCceecCCCCCCHHHH---
Confidence 66899999999986 33333333 321 2234444 443 3443 345666666667665544212222110
Q ss_pred hcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc-cCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHH
Q 005773 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (678)
Q Consensus 243 l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll-~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~ 321 (678)
....+.. +....++++|||=|-|+- +...-..+..|-..+.+.--++.+-|+...+....+.
T Consensus 171 --------------ak~al~~---ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~ 233 (451)
T COG0541 171 --------------AKAALEK---AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAK 233 (451)
T ss_pred --------------HHHHHHH---HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHH
Confidence 1111221 223356789999998875 4446677777877777776778888998888777766
Q ss_pred Hh
Q 005773 322 LS 323 (678)
Q Consensus 322 ~~ 323 (678)
.|
T Consensus 234 aF 235 (451)
T COG0541 234 AF 235 (451)
T ss_pred HH
Confidence 54
No 462
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=84.42 E-value=2.5 Score=50.12 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=26.6
Q ss_pred CeeEEEEeCCcccccC-------C-hHHHHHHHHHHCC---CCccEEEEEeccChh
Q 005773 271 DLAVLILDEADRLLEL-------G-FSAEIHELVRLCP---KRRQTMLFSATLTED 315 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~-------g-f~~~i~~i~~~~~---~~~q~il~SATl~~~ 315 (678)
...+|+|||+|.+... + ....+..++..+. ....++++.||-.++
T Consensus 546 ~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~ 601 (733)
T TIGR01243 546 APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD 601 (733)
T ss_pred CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh
Confidence 3468999999998621 1 1223344444442 445678888886543
No 463
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.42 E-value=0.95 Score=34.99 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=17.9
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
|...++.|++|||||.. +-+++.+
T Consensus 23 g~~tli~G~nGsGKSTl--lDAi~~~ 46 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL--LDAIQTV 46 (62)
T ss_pred CcEEEEECCCCCCHHHH--HHHHHHH
Confidence 45689999999999974 4444444
No 464
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=84.20 E-value=10 Score=40.27 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=34.2
Q ss_pred CeeEEEEeCCcccccCC--hHHHHHHHHHHCCCCccEEEEEeccChhH
Q 005773 271 DLAVLILDEADRLLELG--FSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~g--f~~~i~~i~~~~~~~~q~il~SATl~~~~ 316 (678)
.--++|+|-||.+-+++ ....+..+...++.+.-.|++|+++.+..
T Consensus 115 ~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~ 162 (438)
T KOG2543|consen 115 QKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQ 162 (438)
T ss_pred ceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHH
Confidence 34589999999998876 33555666667777766789999988643
No 465
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.11 E-value=8.4 Score=44.46 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=26.0
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEec
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SAT 311 (678)
....+++||||||.|... -.+.+..++...|... +++|.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCe-EEEEEeC
Confidence 467889999999998653 2344555666554433 3445544
No 466
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=83.89 E-value=12 Score=40.19 Aligned_cols=110 Identities=18% Similarity=0.190 Sum_probs=57.9
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (678)
.+.+-+.|+.|.|||.. +-++-..+.... ..+ ++.-+....+++.+..+. |+...-
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~~~---k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~l---- 117 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPIKR---KRR----VHFHEFMLDVHSRLHQLR-----------GQDDPL---- 117 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCccc---ccc----ccccHHHHHHHHHHHHHh-----------CCCccH----
Confidence 45788999999999974 222222111100 111 244567777777777653 111110
Q ss_pred HhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHH-CCCCccEEEEEeccChhH
Q 005773 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL-CPKRRQTMLFSATLTEDV 316 (678)
Q Consensus 242 ~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~-~~~~~q~il~SATl~~~~ 316 (678)
..+.+.+. ....+|.+||.|. .+.+-.-.+..++.. +....-+|+.|-++|.++
T Consensus 118 -------------~~va~~l~-------~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 118 -------------PQVADELA-------KESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred -------------HHHHHHHH-------hcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 01122222 2455899999995 232222233333332 345666777788877654
No 467
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=83.75 E-value=7 Score=43.53 Aligned_cols=74 Identities=15% Similarity=0.260 Sum_probs=56.0
Q ss_pred CceEEEEeccHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcc-----ccc-ccCCCCC
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAA-RGLDIIG 438 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~GlDi~~ 438 (678)
...+||.+||+..+.++...+... ++.+..++|+.+...+...+. +..+|+|+|. .+. ..+++.+
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~ 147 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDA 147 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHH
Confidence 347899999999999988776643 678889999998876655443 5678999994 233 4578889
Q ss_pred ccEEEEcCC
Q 005773 439 VQTVINYAC 447 (678)
Q Consensus 439 v~~VI~~d~ 447 (678)
+++||.-..
T Consensus 148 l~~lViDEa 156 (460)
T PRK11776 148 LNTLVLDEA 156 (460)
T ss_pred CCEEEEECH
Confidence 999985443
No 468
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=83.54 E-value=0.7 Score=51.20 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=28.5
Q ss_pred EECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHC
Q 005773 251 VATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (678)
Q Consensus 251 v~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~ 299 (678)
+-+||-..++-.. .+...+-++.|+|||-.-+..+....+-.+++..
T Consensus 570 vLS~GEqQRLa~A--RLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~ 616 (659)
T KOG0060|consen 570 VLSPGEQQRLAFA--RLFYHKPKFAILDECTSAVTEDVEGALYRKCREM 616 (659)
T ss_pred hcCHHHHHHHHHH--HHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence 4566655443222 1224456789999999877766666666665554
No 469
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.52 E-value=6 Score=42.57 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=13.4
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
.++++||.|+|||..
T Consensus 41 ~~L~~G~~G~GKt~~ 55 (367)
T PRK14970 41 ALLFCGPRGVGKTTC 55 (367)
T ss_pred EEEEECCCCCCHHHH
Confidence 688999999999975
No 470
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=83.37 E-value=5.3 Score=48.15 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
++.++.||+|.|||..
T Consensus 195 ~n~lL~G~pGvGKT~l 210 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAI 210 (852)
T ss_pred CceEEEcCCCCCHHHH
Confidence 5899999999999975
No 471
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=83.33 E-value=4.1 Score=44.65 Aligned_cols=71 Identities=27% Similarity=0.388 Sum_probs=53.0
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh---c-CCCCEEEECchHHHHHHhccCccCCC
Q 005773 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL---R-SMPDIVVATPGRMIDHLRNSMSVDLD 270 (678)
Q Consensus 195 ~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l---~-~~~dIiv~Tp~~L~~~l~~~~~~~l~ 270 (678)
..++++|.+.++.-|..+...+.+ .+++++.++|+.+.......| + +..+|+|||.- . ...++..
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK----~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDv-----A--gRGIDIp 584 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEK----AGYKVTTLHGGKSQEQRENALADFREGTGDILVATDV-----A--GRGIDIP 584 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhh----ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecc-----c--ccCCCCC
Confidence 356789999999998877777776 479999999998877766544 3 36799999942 1 2256777
Q ss_pred CeeEEE
Q 005773 271 DLAVLI 276 (678)
Q Consensus 271 ~i~~lV 276 (678)
++++||
T Consensus 585 nVSlVi 590 (673)
T KOG0333|consen 585 NVSLVI 590 (673)
T ss_pred ccceee
Confidence 777765
No 472
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=83.30 E-value=1.3 Score=47.25 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=26.3
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~L 208 (678)
+..++++||||||||+. +-.++..+... ...+++.+--..++
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i~~~----~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYINKN----AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhhCcC----CCCEEEEEcCChhh
Confidence 56788999999999985 44455544221 12356665554444
No 473
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=83.18 E-value=0.49 Score=44.87 Aligned_cols=28 Identities=18% Similarity=0.488 Sum_probs=18.3
Q ss_pred CCeeEEEEeCCcccc--cCChHHHHHHHHH
Q 005773 270 DDLAVLILDEADRLL--ELGFSAEIHELVR 297 (678)
Q Consensus 270 ~~i~~lVvDEah~ll--~~gf~~~i~~i~~ 297 (678)
..-+++||||.-.|- ..+|...+..+++
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 356799999999875 4558888887776
No 474
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=83.14 E-value=2 Score=48.82 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=19.8
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
.|+-+.+.|++|||||+ ++-++..++
T Consensus 360 ~G~~vaIvG~SGsGKST--Ll~lL~g~~ 385 (529)
T TIGR02868 360 PGERVAILGPSGSGKST--LLMLLTGLL 385 (529)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcCC
Confidence 57788999999999997 355555544
No 475
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=83.12 E-value=0.32 Score=48.17 Aligned_cols=40 Identities=13% Similarity=0.287 Sum_probs=23.9
Q ss_pred eEEEEeCCcccc-c----CChHHHHHHHHHHCCC-CccEEEEEecc
Q 005773 273 AVLILDEADRLL-E----LGFSAEIHELVRLCPK-RRQTMLFSATL 312 (678)
Q Consensus 273 ~~lVvDEah~ll-~----~gf~~~i~~i~~~~~~-~~q~il~SATl 312 (678)
-+|||||+|.+. . ..+...+..++..... ....++++++.
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 589999999998 2 2344555666665332 23345566665
No 476
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=82.95 E-value=0.72 Score=54.96 Aligned_cols=6 Identities=17% Similarity=0.091 Sum_probs=2.2
Q ss_pred HHHHHH
Q 005773 134 RPLLRA 139 (678)
Q Consensus 134 ~~l~~~ 139 (678)
..|.+.
T Consensus 739 ~~La~~ 744 (784)
T PF04931_consen 739 EQLAAI 744 (784)
T ss_pred HHHHHH
Confidence 333333
No 477
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=82.93 E-value=1.4 Score=50.99 Aligned_cols=57 Identities=19% Similarity=0.089 Sum_probs=41.0
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEe
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 231 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~ 231 (678)
.++++.||||||||..|++|.+-.+ +..++|+=|--++........++ .|..|.++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~--------~gS~VV~DpKGE~~~~Ta~~R~~----~G~~V~~Fn 196 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF--------KGSVIALDVKGELFELTSRARKA----SGDAVFKFA 196 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC--------CCCEEEEeCCchHHHHHHHHHHh----CCCEEEEec
Confidence 4899999999999999999986432 23589999998987765554443 354554433
No 478
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=82.89 E-value=4.9 Score=47.92 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
+..+++.||+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45688999999999975
No 479
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.78 E-value=12 Score=41.13 Aligned_cols=70 Identities=13% Similarity=0.160 Sum_probs=53.5
Q ss_pred ce-EEEEeccHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc-----c-cccCCCCCc
Q 005773 371 SK-VIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----A-ARGLDIIGV 439 (678)
Q Consensus 371 ~~-vLVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~-----~-~~GlDi~~v 439 (678)
++ .||.|||+..+.++....+. .|+++..+||+.+.-++...|+ -...|+|||.- + --++|+..|
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceee
Confidence 44 46668999999988665543 4889999999999988877776 34569999962 1 367888888
Q ss_pred cEEEE
Q 005773 440 QTVIN 444 (678)
Q Consensus 440 ~~VI~ 444 (678)
.++|.
T Consensus 372 S~LV~ 376 (731)
T KOG0339|consen 372 SYLVL 376 (731)
T ss_pred eEEEE
Confidence 88774
No 480
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=82.74 E-value=2.4 Score=43.69 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=28.3
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEec
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SAT 311 (678)
+.+-+++++||.-.-++......+..++...... .++++.+.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~-~tii~isH 195 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFAD-CTVILSEH 195 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCC-CEEEEEEC
Confidence 3455789999999888877777777777765443 34444443
No 481
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=82.70 E-value=2.4 Score=43.61 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=17.3
Q ss_pred HhcCCCEEEEcCCCchhhhh
Q 005773 159 ALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 159 ll~g~dvl~~a~TGsGKT~~ 178 (678)
+.+++.++++||+|+|||..
T Consensus 30 ~~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHH
T ss_pred HHcCCcEEEECCCCCchhHH
Confidence 44578999999999999975
No 482
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=82.53 E-value=2.2 Score=49.87 Aligned_cols=71 Identities=21% Similarity=0.211 Sum_probs=52.7
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
.+++-|.+++... ...++|.|..|||||.+- ..-+.+++.... ..+..+|.|+=|+-.|..+.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vl-t~Ria~li~~~~-v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVL-TERIAYLIAAGG-VDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhH-HHHHHHHHHcCC-cChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5788999998765 567888999999999874 333334443322 3345689999999999999988888765
No 483
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=82.40 E-value=2.1 Score=48.86 Aligned_cols=70 Identities=20% Similarity=0.070 Sum_probs=53.3
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC-CCCCeEEEEEcCcHHHHHHHHHHHH
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLILTPTRELAVQVHSMIE 217 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~vLIl~Ptr~La~Q~~~~~~ 217 (678)
.+..-|..|....+.++=.|+.||+|+|||++ .+-++..|+.... ....-++||+|=|...+.|....+.
T Consensus 378 ildsSq~~A~qs~ltyelsliqgppGTgkt~v-tlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTYELSLIQGPPGTGKTLV-TLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred eecHHHHHHHHHHhhhhhheeecCCCCCceee-hHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHH
Confidence 34566999999999999999999999999987 5666666665442 2234468999999988888655544
No 484
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=82.35 E-value=2 Score=50.55 Aligned_cols=71 Identities=27% Similarity=0.245 Sum_probs=55.2
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 145 ~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
+-.++|-|-++|-.-..-.++.+.||+|+|||-. ..-++..++.+ .+.++++|++......+|..+.+.++
T Consensus 736 ~v~ft~~qveai~sg~qpgltmvvgppgtgktd~-avqil~~lyhn---~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 736 QVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDV-AVQILSVLYHN---SPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred hhccCHHHHHHHHhcCCCCceeeecCCCCCCcch-hhhhhhhhhhc---CCCcceEEEEecccchhHHHHHHHhc
Confidence 4467899999988777778999999999999976 34455555554 45678999999988888887766553
No 485
>PRK08506 replicative DNA helicase; Provisional
Probab=82.25 E-value=4.7 Score=44.99 Aligned_cols=112 Identities=20% Similarity=0.133 Sum_probs=54.8
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEe-cCCChHHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV-GGLSTKMQE 240 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~-g~~~~~~~~ 240 (678)
|.-+++.|.||.|||.. ++-+...+... +.+|+|++.= .-..|+...+-. ...++....+. |..+.....
T Consensus 192 G~LivIaarpg~GKT~f-al~ia~~~~~~-----g~~V~~fSlE-Ms~~ql~~Rlla--~~s~v~~~~i~~~~l~~~e~~ 262 (472)
T PRK08506 192 GDLIIIAARPSMGKTTL-CLNMALKALNQ-----DKGVAFFSLE-MPAEQLMLRMLS--AKTSIPLQNLRTGDLDDDEWE 262 (472)
T ss_pred CceEEEEcCCCCChHHH-HHHHHHHHHhc-----CCcEEEEeCc-CCHHHHHHHHHH--HhcCCCHHHHhcCCCCHHHHH
Confidence 34577899999999964 55555554322 2346666443 334455444332 12233222222 222222211
Q ss_pred ------HHhcCCCCEEEE-----CchHHHHHHhccCccCCCCeeEEEEeCCcccc
Q 005773 241 ------TALRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (678)
Q Consensus 241 ------~~l~~~~dIiv~-----Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (678)
..+... .+.|- |+..+...++.... ....+++||||=.+.|.
T Consensus 263 ~~~~a~~~l~~~-~l~I~d~~~~ti~~I~~~~r~l~~-~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 263 RLSDACDELSKK-KLFVYDSGYVNIHQVRAQLRKLKS-QHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHcC-CeEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEcChhhcc
Confidence 112232 34443 33444444432110 11257899999998775
No 486
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=81.76 E-value=0.79 Score=49.75 Aligned_cols=47 Identities=32% Similarity=0.366 Sum_probs=32.7
Q ss_pred HhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 005773 159 ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (678)
Q Consensus 159 ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q 211 (678)
-...+++++.|.||||||.+ +-+++..+..+ +-+++|.=|.-+....
T Consensus 12 ~~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~-----g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 12 DSENRHILIIGATGSGKTQA-IRHLLDQIRAR-----GDRAIIYDPKGEFTER 58 (386)
T ss_dssp GGGGG-EEEEE-TTSSHHHH-HHHHHHHHHHT-----T-EEEEEEETTHHHHH
T ss_pred chhhCcEEEECCCCCCHHHH-HHHHHHHHHHc-----CCEEEEEECCchHHHH
Confidence 34568999999999999975 67778777665 3357888888776443
No 487
>CHL00095 clpC Clp protease ATP binding subunit
Probab=81.75 E-value=4.3 Score=48.75 Aligned_cols=16 Identities=31% Similarity=0.210 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
+++++.||+|.|||..
T Consensus 201 ~n~lL~G~pGvGKTal 216 (821)
T CHL00095 201 NNPILIGEPGVGKTAI 216 (821)
T ss_pred CCeEEECCCCCCHHHH
Confidence 5899999999999976
No 488
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=81.63 E-value=5.4 Score=45.59 Aligned_cols=94 Identities=21% Similarity=0.411 Sum_probs=54.4
Q ss_pred CcHHHHHHHHHHh--------cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 148 PTPIQAACIPLAL--------TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 148 ~~~iQ~~~i~~ll--------~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
+..+-..++..+. +|+=+|+.||+|-|||.+. - +. ++.+..
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~-k-------------------------SI----A~ALnR- 464 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA-K-------------------------SI----ARALNR- 464 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH-H-------------------------HH----HHHhCC-
Confidence 3445556665543 3567889999999999641 1 11 111111
Q ss_pred hhcCCceeEEEecCCChHHHHHHhcCCCC-EEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc
Q 005773 220 AQFTDIRCCLVVGGLSTKMQETALRSMPD-IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (678)
Q Consensus 220 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~d-Iiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (678)
+|. ..-.||...... +++..+ -|=+-||++++.|..-..- --++.|||+|.+.
T Consensus 465 -kFf----RfSvGG~tDvAe---IkGHRRTYVGAMPGkiIq~LK~v~t~----NPliLiDEvDKlG 518 (906)
T KOG2004|consen 465 -KFF----RFSVGGMTDVAE---IKGHRRTYVGAMPGKIIQCLKKVKTE----NPLILIDEVDKLG 518 (906)
T ss_pred -ceE----EEeccccccHHh---hcccceeeeccCChHHHHHHHhhCCC----CceEEeehhhhhC
Confidence 111 123456554433 333333 3445699999999764321 1279999999987
No 489
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=81.63 E-value=6.4 Score=47.63 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=65.4
Q ss_pred hccCCceEEEEeccHHHHHHHHHHH----hhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc-ccccCCCCCcc
Q 005773 366 SKTFTSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-AARGLDIIGVQ 440 (678)
Q Consensus 366 ~~~~~~~vLVF~~s~~~~~~l~~~L----~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~-~~~GlDi~~v~ 440 (678)
.-..+..|.|.+||.-.|++-.+-| ....+++..++.-.+..+...+++...+|+++|+|.|-. ++-++-+.+..
T Consensus 639 AV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLG 718 (1139)
T COG1197 639 AVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLG 718 (1139)
T ss_pred HhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCC
Confidence 3445678999999987766655544 455788999999999999999999999999999999965 57888888999
Q ss_pred EEEE
Q 005773 441 TVIN 444 (678)
Q Consensus 441 ~VI~ 444 (678)
+||.
T Consensus 719 LlII 722 (1139)
T COG1197 719 LLII 722 (1139)
T ss_pred eEEE
Confidence 8883
No 490
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=81.45 E-value=10 Score=42.29 Aligned_cols=146 Identities=16% Similarity=0.094 Sum_probs=80.6
Q ss_pred CCcHHHHHHHHHHhc------C----CCEEEEcCCCchhhhhhh-hchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHH
Q 005773 147 KPTPIQAACIPLALT------G----RDICGSAITGSGKTAAFA-LPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSM 215 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~------g----~dvl~~a~TGsGKT~~~~-l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~ 215 (678)
.+-|+|.-++-.++. | +-.++..|-|-|||.... |.....+... ..+-.+.|++|+.+-+.+.+..
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~---~~~~~~~i~A~s~~qa~~~F~~ 137 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW---RSGAGIYILAPSVEQAANSFNP 137 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh---hcCCcEEEEeccHHHHHHhhHH
Confidence 478999999998883 1 357888999999996533 3233333332 2355789999999988888877
Q ss_pred HHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchH---HHHHHh-ccCccCCCCeeEEEEeCCcccccCChHHH
Q 005773 216 IEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGR---MIDHLR-NSMSVDLDDLAVLILDEADRLLELGFSAE 291 (678)
Q Consensus 216 ~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~---L~~~l~-~~~~~~l~~i~~lVvDEah~ll~~gf~~~ 291 (678)
++....... .. ........+-...+... .+..+. +....+-.+..+.|+||.|..-..+ ..
T Consensus 138 ar~mv~~~~--------~l-----~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~ 202 (546)
T COG4626 138 ARDMVKRDD--------DL-----RDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DM 202 (546)
T ss_pred HHHHHHhCc--------ch-----hhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HH
Confidence 776543321 00 00001111111111111 111121 1122334466799999999866532 33
Q ss_pred HHHHHHHC--CCCccEEEEEe
Q 005773 292 IHELVRLC--PKRRQTMLFSA 310 (678)
Q Consensus 292 i~~i~~~~--~~~~q~il~SA 310 (678)
+..+..-+ .++.+++..|.
T Consensus 203 ~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 203 YSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHhhhccCcCceEEEEec
Confidence 44443333 23456666664
No 491
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=81.33 E-value=2.6 Score=42.90 Aligned_cols=15 Identities=27% Similarity=0.202 Sum_probs=13.6
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
++++.||+|.|||+.
T Consensus 54 HvLl~GPPGlGKTTL 68 (332)
T COG2255 54 HVLLFGPPGLGKTTL 68 (332)
T ss_pred eEEeeCCCCCcHHHH
Confidence 689999999999974
No 492
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=81.31 E-value=6.7 Score=43.15 Aligned_cols=38 Identities=32% Similarity=0.308 Sum_probs=24.0
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
.|.-+++.|++|+|||.. ++-+...+... .+.+|++++
T Consensus 193 ~g~liviag~pg~GKT~~-al~ia~~~a~~----~g~~v~~fS 230 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTL-ALNIAENVALR----EGKPVLFFS 230 (421)
T ss_pred CCceEEEEeCCCCCHHHH-HHHHHHHHHHh----CCCcEEEEE
Confidence 355677999999999964 55555443211 123477776
No 493
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=81.26 E-value=5 Score=38.22 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=28.3
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEe
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSA 310 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SA 310 (678)
+.+-+++++||.-.-++......+..++..+... .+++++.
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~s 154 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWIT 154 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEe
Confidence 4456799999999888877677777777665443 4455543
No 494
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=81.10 E-value=6.8 Score=40.17 Aligned_cols=115 Identities=24% Similarity=0.224 Sum_probs=60.2
Q ss_pred HHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCCh
Q 005773 157 PLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLST 236 (678)
Q Consensus 157 ~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~ 236 (678)
|.-..|+-+++.|..|.|||.+. .... ...|.++++-|...-..- ..+..++.
T Consensus 89 ~A~k~g~l~~vyg~~g~gKt~a~-~~y~---------~s~p~~~l~~~~p~~~a~--~~i~~i~~--------------- 141 (297)
T COG2842 89 PASKTGSLVVVYGYAGLGKTQAA-KNYA---------PSNPNALLIEADPSYTAL--VLILIICA--------------- 141 (297)
T ss_pred hhhhcCceEEEeccccchhHHHH-Hhhc---------ccCccceeecCChhhHHH--HHHHHHHH---------------
Confidence 33456777889999999999873 2222 124456777666533221 11111111
Q ss_pred HHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccC
Q 005773 237 KMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (678)
Q Consensus 237 ~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~ 313 (678)
+..++|.+.+.+.............+++|+|||++|.-. .+..+.....+..+.+.+..++.
T Consensus 142 -----------~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~----ale~lr~i~d~~Gi~~vLvG~pr 203 (297)
T COG2842 142 -----------AAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYR----ALEELRRIHDKTGIGVVLVGMPR 203 (297)
T ss_pred -----------HHhcccchhHHHHHHHHHHHHccCcceeeeehhhccChH----HHHHHHHHHHhhCceEEEecChH
Confidence 111223332222222111111446789999999998543 33444444445556677777753
No 495
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=81.04 E-value=1.1 Score=49.24 Aligned_cols=49 Identities=22% Similarity=0.254 Sum_probs=34.8
Q ss_pred HHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 005773 156 IPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (678)
Q Consensus 156 i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~ 210 (678)
+|.-...+++++.|+||||||.. +..++..+... +.+++|+=|..++..
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~-----~~~~vi~D~kg~~~~ 84 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRAR-----GDRAIIYDPNGGFVS 84 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhc-----CCCEEEEeCCcchhH
Confidence 34444568999999999999975 44555555443 335899999888754
No 496
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=80.93 E-value=1.4 Score=44.98 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCCEEEEcCCCchhhhh
Q 005773 153 AACIPLALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 153 ~~~i~~ll~g~dvl~~a~TGsGKT~~ 178 (678)
..++..+..|+++++.|++|+|||..
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~l 37 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTL 37 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHH
Confidence 34455666789999999999999975
No 497
>PRK10865 protein disaggregation chaperone; Provisional
Probab=80.91 E-value=6.8 Score=47.18 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
.++|+.||+|+|||..
T Consensus 200 ~n~lL~G~pGvGKT~l 215 (857)
T PRK10865 200 NNPVLIGEPGVGKTAI 215 (857)
T ss_pred CceEEECCCCCCHHHH
Confidence 4899999999999975
No 498
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=80.78 E-value=7.8 Score=39.43 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=56.4
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (678)
|.=+++.|.||.|||.. ++-+...+.... +..|++++.=- -..++...+-. ...++....+..+.-....+.
T Consensus 19 g~L~vi~a~pg~GKT~~-~l~ia~~~a~~~----~~~vly~SlEm-~~~~l~~R~la--~~s~v~~~~i~~g~l~~~e~~ 90 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAF-ALQIALNAALNG----GYPVLYFSLEM-SEEELAARLLA--RLSGVPYNKIRSGDLSDEEFE 90 (259)
T ss_dssp T-EEEEEESTTSSHHHH-HHHHHHHHHHTT----SSEEEEEESSS--HHHHHHHHHH--HHHTSTHHHHHCCGCHHHHHH
T ss_pred CcEEEEEecccCCchHH-HHHHHHHHHHhc----CCeEEEEcCCC-CHHHHHHHHHH--HhhcchhhhhhccccCHHHHH
Confidence 34577999999999975 555555544332 24678887631 11222222221 122332222222222222221
Q ss_pred -------HhcCCCCEEEECc----hHHHHHHhccCccCCCCeeEEEEeCCccccc
Q 005773 242 -------ALRSMPDIVVATP----GRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (678)
Q Consensus 242 -------~l~~~~dIiv~Tp----~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~ 285 (678)
.+...+-++..+| ..|...+..... ....+.+||||=.|.|..
T Consensus 91 ~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~-~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 91 RLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKR-EGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHH-HSTTEEEEEEEEGGGSBT
T ss_pred HHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHh-hccCCCEEEechHHHhcC
Confidence 2233322333443 344444443211 126789999999998875
No 499
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=80.63 E-value=12 Score=45.04 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=19.8
Q ss_pred HHHHHHHHh----c--CCCEEEEcCCCchhhhh
Q 005773 152 QAACIPLAL----T--GRDICGSAITGSGKTAA 178 (678)
Q Consensus 152 Q~~~i~~ll----~--g~dvl~~a~TGsGKT~~ 178 (678)
|...|..++ . ..++|+.||.|+|||..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal 224 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAV 224 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHH
Confidence 555555544 2 25899999999999975
No 500
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=80.63 E-value=6 Score=44.51 Aligned_cols=103 Identities=12% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHH
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (678)
+.+++.||+|+|||+. +-.+...+ +..++.+....-.....-.....+
T Consensus 89 ~giLL~GppGtGKT~l-a~alA~~~--------~~~~~~i~~~~~~~~~~g~~~~~l----------------------- 136 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLL-AKAVAGEA--------GVPFFSISGSDFVEMFVGVGASRV----------------------- 136 (495)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHc--------CCCeeeccHHHHHHHHhcccHHHH-----------------------
Q ss_pred hcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccC-------------ChHHHHHHHHHHCCCCccEEEEE
Q 005773 243 LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL-------------GFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 243 l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~-------------gf~~~i~~i~~~~~~~~q~il~S 309 (678)
..+....... .-.+|+|||+|.+... .....+...+..+.....++++.
T Consensus 137 ------------~~~f~~a~~~------~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~ 198 (495)
T TIGR01241 137 ------------RDLFEQAKKN------APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIA 198 (495)
T ss_pred ------------HHHHHHHHhc------CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEE
Q ss_pred eccChh
Q 005773 310 ATLTED 315 (678)
Q Consensus 310 ATl~~~ 315 (678)
||-.++
T Consensus 199 aTn~~~ 204 (495)
T TIGR01241 199 ATNRPD 204 (495)
T ss_pred ecCChh
Done!