Query 005773
Match_columns 678
No_of_seqs 592 out of 3599
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 07:06:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 5.7E-60 1.9E-64 519.7 44.9 363 122-489 53-420 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 1.3E-56 4.4E-61 489.5 40.4 368 124-497 36-403 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 2.4E-56 8.2E-61 488.2 40.8 365 121-489 11-395 (417)
4 3eiq_A Eukaryotic initiation f 100.0 4.8E-55 1.7E-59 477.2 37.2 367 124-496 39-406 (414)
5 1s2m_A Putative ATP-dependent 100.0 3.5E-54 1.2E-58 468.6 42.1 366 123-496 19-384 (400)
6 3fht_A ATP-dependent RNA helic 100.0 1.1E-53 3.8E-58 466.0 40.3 367 122-496 22-399 (412)
7 1xti_A Probable ATP-dependent 100.0 3.5E-53 1.2E-57 459.0 41.8 364 125-495 8-376 (391)
8 3sqw_A ATP-dependent RNA helic 100.0 5.3E-54 1.8E-58 489.4 37.1 364 132-495 28-416 (579)
9 3pey_A ATP-dependent RNA helic 100.0 5.8E-53 2E-57 457.2 42.1 361 124-494 4-375 (395)
10 3i5x_A ATP-dependent RNA helic 100.0 2.1E-53 7.2E-58 483.5 37.5 364 132-495 79-467 (563)
11 3fmp_B ATP-dependent RNA helic 100.0 1.9E-55 6.4E-60 490.4 19.9 365 123-495 90-465 (479)
12 1hv8_A Putative ATP-dependent 100.0 4E-52 1.4E-56 446.1 41.9 358 124-495 5-363 (367)
13 1fuu_A Yeast initiation factor 100.0 3.1E-54 1E-58 467.5 22.2 364 124-494 20-383 (394)
14 2z0m_A 337AA long hypothetical 100.0 1.4E-50 5E-55 429.0 37.0 334 132-489 1-334 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 3.5E-50 1.2E-54 455.2 36.7 342 128-486 24-383 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 7.1E-49 2.4E-53 440.0 33.5 341 125-488 2-354 (523)
17 3oiy_A Reverse gyrase helicase 100.0 4.8E-49 1.6E-53 430.5 29.0 340 135-504 9-392 (414)
18 3fho_A ATP-dependent RNA helic 100.0 1.9E-49 6.5E-54 444.3 19.0 360 126-495 120-489 (508)
19 3l9o_A ATP-dependent RNA helic 100.0 5E-48 1.7E-52 463.9 29.7 343 125-487 162-608 (1108)
20 4a2p_A RIG-I, retinoic acid in 100.0 8.5E-46 2.9E-50 419.8 28.4 332 144-482 4-513 (556)
21 1tf5_A Preprotein translocase 100.0 4.2E-45 1.4E-49 414.0 33.6 325 142-479 79-547 (844)
22 2ykg_A Probable ATP-dependent 100.0 1.6E-45 5.5E-50 429.1 25.3 346 137-485 3-524 (696)
23 4ddu_A Reverse gyrase; topoiso 100.0 9.3E-45 3.2E-49 435.5 30.7 319 142-490 74-503 (1104)
24 3tbk_A RIG-I helicase domain; 100.0 6.4E-45 2.2E-49 412.2 25.2 333 147-485 4-515 (555)
25 4a2q_A RIG-I, retinoic acid in 100.0 2E-44 6.9E-49 424.8 28.7 338 142-482 243-754 (797)
26 2va8_A SSO2462, SKI2-type heli 100.0 1.1E-43 3.7E-48 414.4 33.4 336 124-478 7-409 (715)
27 1gku_B Reverse gyrase, TOP-RG; 100.0 3.3E-44 1.1E-48 431.0 25.4 321 141-491 52-468 (1054)
28 2zj8_A DNA helicase, putative 100.0 5.8E-44 2E-48 416.7 26.4 335 126-478 2-388 (720)
29 2p6r_A Afuhel308 helicase; pro 100.0 4.2E-44 1.5E-48 416.7 25.1 334 126-478 2-389 (702)
30 4a2w_A RIG-I, retinoic acid in 100.0 1.5E-43 5.3E-48 421.8 26.5 338 141-481 242-753 (936)
31 2fsf_A Preprotein translocase 100.0 4.2E-43 1.4E-47 396.4 28.1 325 143-480 71-586 (853)
32 2xgj_A ATP-dependent RNA helic 100.0 3.3E-42 1.1E-46 410.1 35.2 324 142-486 82-509 (1010)
33 1nkt_A Preprotein translocase 100.0 4.4E-41 1.5E-45 380.1 40.9 327 142-481 107-621 (922)
34 1wp9_A ATP-dependent RNA helic 100.0 8.9E-42 3E-46 378.8 33.2 325 147-480 9-478 (494)
35 4a4z_A Antiviral helicase SKI2 100.0 2.9E-41 9.8E-46 402.0 36.1 326 143-488 36-505 (997)
36 4gl2_A Interferon-induced heli 100.0 3.9E-43 1.3E-47 409.2 18.9 326 147-478 7-520 (699)
37 1gm5_A RECG; helicase, replica 100.0 1.4E-40 4.8E-45 384.5 22.7 326 134-484 356-704 (780)
38 4f92_B U5 small nuclear ribonu 100.0 4.1E-39 1.4E-43 399.3 34.3 346 132-486 911-1317(1724)
39 2eyq_A TRCF, transcription-rep 100.0 1.4E-38 4.9E-43 384.2 35.5 323 130-477 586-922 (1151)
40 2whx_A Serine protease/ntpase/ 100.0 3.7E-41 1.3E-45 382.5 9.6 314 130-489 155-493 (618)
41 2oca_A DAR protein, ATP-depend 100.0 6.6E-39 2.2E-43 359.8 26.1 312 147-475 113-453 (510)
42 4f92_B U5 small nuclear ribonu 100.0 8.2E-39 2.8E-43 396.6 27.5 338 144-486 76-482 (1724)
43 2jlq_A Serine protease subunit 100.0 9.1E-40 3.1E-44 360.1 15.6 287 144-476 1-310 (451)
44 2xau_A PRE-mRNA-splicing facto 100.0 1.6E-38 5.3E-43 369.7 22.5 338 123-479 70-445 (773)
45 2fwr_A DNA repair protein RAD2 100.0 3.7E-38 1.3E-42 350.2 20.6 296 147-478 93-455 (472)
46 3o8b_A HCV NS3 protease/helica 100.0 5.7E-39 2E-43 361.4 13.4 278 148-481 218-518 (666)
47 1yks_A Genome polyprotein [con 100.0 1.2E-38 4E-43 349.7 10.0 280 158-489 4-314 (440)
48 2wv9_A Flavivirin protease NS2 100.0 3E-38 1E-42 360.8 13.5 306 139-489 202-548 (673)
49 2z83_A Helicase/nucleoside tri 100.0 2.5E-37 8.4E-42 341.3 13.2 273 156-477 15-313 (459)
50 3fe2_A Probable ATP-dependent 100.0 1.5E-35 5E-40 299.5 23.8 212 122-334 26-239 (242)
51 2v6i_A RNA helicase; membrane, 100.0 1.2E-35 3.9E-40 325.3 20.0 269 161-474 1-288 (431)
52 3ber_A Probable ATP-dependent 100.0 1.3E-34 4.4E-39 293.8 24.7 207 123-332 41-247 (249)
53 3dmq_A RNA polymerase-associat 100.0 1.5E-34 5.3E-39 344.8 27.9 322 146-475 152-611 (968)
54 3fmo_B ATP-dependent RNA helic 100.0 8.9E-35 3E-39 302.8 21.4 205 123-333 90-298 (300)
55 3rc3_A ATP-dependent RNA helic 100.0 5.9E-35 2E-39 332.6 20.6 312 133-494 130-461 (677)
56 1wrb_A DJVLGB; RNA helicase, D 100.0 1.9E-34 6.4E-39 293.3 21.2 219 123-342 21-249 (253)
57 3iuy_A Probable ATP-dependent 100.0 2.4E-34 8.1E-39 287.9 21.3 209 121-331 15-227 (228)
58 3h1t_A Type I site-specific re 100.0 1.1E-34 3.8E-39 331.0 21.2 302 147-466 178-545 (590)
59 2pl3_A Probable ATP-dependent 100.0 5.7E-34 1.9E-38 286.6 23.6 209 124-333 24-233 (236)
60 1vec_A ATP-dependent RNA helic 100.0 1.2E-33 4E-38 278.1 24.8 202 125-330 3-205 (206)
61 3bor_A Human initiation factor 100.0 5.6E-34 1.9E-38 287.0 21.8 206 123-332 28-234 (237)
62 1q0u_A Bstdead; DEAD protein, 100.0 3.4E-34 1.2E-38 284.9 19.9 205 124-332 3-211 (219)
63 3ly5_A ATP-dependent RNA helic 100.0 6.6E-34 2.3E-38 290.7 21.8 207 122-328 49-258 (262)
64 3jux_A Protein translocase sub 100.0 2.1E-31 7.3E-36 294.9 42.4 321 143-481 72-591 (822)
65 2oxc_A Probable ATP-dependent 100.0 1.3E-33 4.4E-38 283.0 22.5 206 122-332 21-228 (230)
66 2gxq_A Heat resistant RNA depe 100.0 1.8E-33 6.1E-38 276.8 22.8 204 126-332 2-205 (207)
67 1qde_A EIF4A, translation init 100.0 3.7E-33 1.3E-37 278.2 23.3 205 124-333 13-217 (224)
68 1z63_A Helicase of the SNF2/RA 100.0 8.6E-33 3E-37 309.2 29.0 313 147-479 37-455 (500)
69 1t6n_A Probable ATP-dependent 100.0 1.7E-32 5.8E-37 272.7 21.6 205 123-331 12-219 (220)
70 3dkp_A Probable ATP-dependent 100.0 1.9E-32 6.6E-37 277.1 19.8 210 123-334 23-242 (245)
71 3mwy_W Chromo domain-containin 100.0 1.9E-31 6.4E-36 313.6 28.4 329 147-488 236-697 (800)
72 1z3i_X Similar to RAD54-like; 100.0 1.8E-30 6.2E-35 297.9 34.7 323 147-478 55-529 (644)
73 1c4o_A DNA nucleotide excision 100.0 1.9E-31 6.6E-36 305.8 21.5 181 301-492 379-565 (664)
74 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.2E-30 7.6E-35 306.7 26.3 335 134-487 251-718 (1038)
75 2d7d_A Uvrabc system protein B 100.0 5.5E-30 1.9E-34 293.5 22.1 181 301-492 385-571 (661)
76 2ipc_A Preprotein translocase 100.0 6.3E-27 2.1E-31 263.7 42.5 131 143-284 76-215 (997)
77 2hjv_A ATP-dependent RNA helic 99.9 7.9E-26 2.7E-30 213.7 19.4 154 338-494 6-159 (163)
78 2p6n_A ATP-dependent RNA helic 99.9 1.6E-25 5.6E-30 216.9 18.2 165 321-489 9-174 (191)
79 2rb4_A ATP-dependent RNA helic 99.9 2.4E-25 8.2E-30 213.0 18.6 157 338-496 4-166 (175)
80 3eaq_A Heat resistant RNA depe 99.9 4.5E-25 1.6E-29 217.7 20.2 146 354-499 15-160 (212)
81 1t5i_A C_terminal domain of A 99.9 2.5E-25 8.7E-30 212.0 17.5 155 339-496 3-158 (172)
82 1fuk_A Eukaryotic initiation f 99.9 5.2E-25 1.8E-29 208.5 17.3 153 341-495 3-155 (165)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.4E-24 4.6E-29 209.5 15.7 150 338-490 16-166 (185)
84 3i32_A Heat resistant RNA depe 99.9 5.9E-24 2E-28 219.8 19.3 155 342-499 3-157 (300)
85 2yjt_D ATP-dependent RNA helic 99.8 2.6E-25 9E-30 211.6 0.0 143 355-497 15-157 (170)
86 3b6e_A Interferon-induced heli 99.9 7.7E-24 2.6E-28 209.0 9.8 167 144-311 30-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 3.3E-22 1.1E-26 224.6 20.7 128 143-284 4-188 (540)
88 3llm_A ATP-dependent RNA helic 99.9 1E-21 3.5E-26 197.0 14.8 183 133-328 47-232 (235)
89 3crv_A XPD/RAD3 related DNA he 99.9 5.3E-20 1.8E-24 207.4 27.4 132 144-285 1-187 (551)
90 1rif_A DAR protein, DNA helica 99.8 5.6E-21 1.9E-25 197.1 11.3 155 147-317 113-267 (282)
91 1z5z_A Helicase of the SNF2/RA 99.8 1.5E-18 5E-23 177.2 14.2 124 355-478 95-225 (271)
92 2fz4_A DNA repair protein RAD2 99.8 4.2E-18 1.4E-22 170.7 15.5 137 147-314 93-230 (237)
93 4a15_A XPD helicase, ATP-depen 99.7 6.6E-17 2.3E-21 183.7 23.8 81 147-232 3-87 (620)
94 1w36_D RECD, exodeoxyribonucle 98.8 1.2E-08 4E-13 115.8 10.2 146 149-311 151-298 (608)
95 3hgt_A HDA1 complex subunit 3; 98.3 3.6E-06 1.2E-10 86.1 12.0 123 354-481 107-241 (328)
96 2gk6_A Regulator of nonsense t 98.0 3.3E-05 1.1E-09 87.8 14.2 69 145-218 178-246 (624)
97 3upu_A ATP-dependent DNA helic 98.0 1.6E-05 5.4E-10 87.1 11.1 138 142-309 20-162 (459)
98 3e1s_A Exodeoxyribonuclease V, 98.0 1.8E-05 6.3E-10 88.7 10.5 126 147-310 189-314 (574)
99 2xzl_A ATP-dependent helicase 97.9 4.7E-05 1.6E-09 88.6 13.4 70 145-219 358-427 (802)
100 2wjy_A Regulator of nonsense t 97.9 7.4E-05 2.5E-09 86.9 14.5 69 145-218 354-422 (800)
101 4b3f_X DNA-binding protein smu 97.9 3.2E-05 1.1E-09 88.4 10.6 66 147-218 189-255 (646)
102 3lfu_A DNA helicase II; SF1 he 97.7 0.0014 4.9E-08 74.7 19.8 72 146-221 8-79 (647)
103 2o0j_A Terminase, DNA packagin 96.9 0.012 3.9E-07 62.2 14.6 72 147-222 163-234 (385)
104 3cpe_A Terminase, DNA packagin 96.6 0.018 6.2E-07 64.7 14.6 73 147-223 163-235 (592)
105 3ec2_A DNA replication protein 96.6 0.01 3.4E-07 55.5 10.2 30 149-178 16-54 (180)
106 3vkw_A Replicase large subunit 96.1 0.018 6.3E-07 61.5 10.2 107 164-311 163-269 (446)
107 1l8q_A Chromosomal replication 96.1 0.019 6.4E-07 59.2 10.0 25 162-187 37-61 (324)
108 2orw_A Thymidine kinase; TMTK, 96.1 0.021 7.2E-07 53.7 9.4 39 162-206 3-41 (184)
109 2kjq_A DNAA-related protein; s 96.0 0.0032 1.1E-07 57.2 3.1 42 271-313 83-125 (149)
110 2b8t_A Thymidine kinase; deoxy 96.0 0.0088 3E-07 58.2 6.3 91 162-284 12-102 (223)
111 1xx6_A Thymidine kinase; NESG, 95.9 0.015 5.2E-07 55.1 7.3 39 162-206 8-46 (191)
112 3te6_A Regulatory protein SIR3 95.8 0.037 1.3E-06 56.8 10.4 27 162-189 45-71 (318)
113 1pjr_A PCRA; DNA repair, DNA r 95.8 0.013 4.3E-07 67.7 7.7 72 146-221 10-81 (724)
114 3u4q_A ATP-dependent helicase/ 95.7 0.0096 3.3E-07 72.8 6.7 71 147-219 10-80 (1232)
115 1uaa_A REP helicase, protein ( 95.6 0.0072 2.5E-07 69.2 4.6 71 147-221 2-72 (673)
116 3kl4_A SRP54, signal recogniti 95.4 0.067 2.3E-06 57.3 11.0 129 164-322 99-233 (433)
117 2w58_A DNAI, primosome compone 95.3 0.063 2.2E-06 50.9 9.4 24 163-187 55-78 (202)
118 1a5t_A Delta prime, HOLB; zinc 95.0 0.034 1.1E-06 57.7 7.1 40 148-188 3-49 (334)
119 3dm5_A SRP54, signal recogniti 95.0 0.21 7.3E-06 53.4 13.2 130 164-323 102-235 (443)
120 2z4s_A Chromosomal replication 94.9 0.076 2.6E-06 57.3 9.6 41 271-312 194-236 (440)
121 2chg_A Replication factor C sm 94.8 0.22 7.5E-06 47.2 11.9 39 270-309 101-139 (226)
122 3n70_A Transport activator; si 94.7 0.13 4.3E-06 46.0 9.3 19 160-178 22-40 (145)
123 2zpa_A Uncharacterized protein 94.7 0.035 1.2E-06 62.4 6.3 114 147-314 175-290 (671)
124 2j9r_A Thymidine kinase; TK1, 94.6 0.025 8.5E-07 54.3 4.4 40 162-207 28-67 (214)
125 1d2n_A N-ethylmaleimide-sensit 94.6 0.26 8.7E-06 49.1 12.0 16 163-178 65-80 (272)
126 3u61_B DNA polymerase accessor 94.5 0.06 2E-06 55.3 7.4 38 270-307 104-141 (324)
127 3h4m_A Proteasome-activating n 94.3 0.12 4.2E-06 51.8 9.1 51 125-178 14-67 (285)
128 2orv_A Thymidine kinase; TP4A 94.3 0.093 3.2E-06 50.9 7.7 39 162-206 19-57 (234)
129 2p65_A Hypothetical protein PF 94.3 0.16 5.4E-06 46.8 9.2 25 162-187 43-67 (187)
130 1sxj_E Activator 1 40 kDa subu 94.2 0.14 4.8E-06 53.1 9.6 42 270-312 133-174 (354)
131 3e2i_A Thymidine kinase; Zn-bi 94.2 0.076 2.6E-06 50.9 6.6 40 162-207 28-67 (219)
132 3syl_A Protein CBBX; photosynt 94.0 0.062 2.1E-06 54.7 6.0 16 163-178 68-83 (309)
133 2qby_B CDC6 homolog 3, cell di 93.8 0.15 5E-06 53.5 8.7 24 163-187 46-69 (384)
134 2v1u_A Cell division control p 93.8 0.11 3.6E-06 54.5 7.6 17 162-178 44-60 (387)
135 3bos_A Putative DNA replicatio 93.6 0.051 1.7E-06 52.7 4.5 18 161-178 51-68 (242)
136 2qgz_A Helicase loader, putati 93.6 0.066 2.3E-06 54.8 5.4 26 162-188 152-177 (308)
137 1w4r_A Thymidine kinase; type 93.6 0.1 3.6E-06 49.2 6.3 38 162-205 20-57 (195)
138 1jbk_A CLPB protein; beta barr 93.3 0.23 8E-06 45.7 8.4 24 163-187 44-67 (195)
139 1fnn_A CDC6P, cell division co 93.2 0.14 4.7E-06 53.8 7.4 15 164-178 46-60 (389)
140 1gm5_A RECG; helicase, replica 93.1 0.26 8.8E-06 56.9 9.8 80 370-449 417-501 (780)
141 1njg_A DNA polymerase III subu 92.8 0.71 2.4E-05 44.1 11.3 23 164-187 47-69 (250)
142 3eie_A Vacuolar protein sortin 92.7 0.14 4.8E-06 52.6 6.4 49 124-178 14-67 (322)
143 3oiy_A Reverse gyrase helicase 92.6 0.47 1.6E-05 50.2 10.7 80 368-447 62-148 (414)
144 2qp9_X Vacuolar protein sortin 92.0 0.36 1.2E-05 50.3 8.4 17 162-178 84-100 (355)
145 1g5t_A COB(I)alamin adenosyltr 91.9 0.53 1.8E-05 44.3 8.7 52 270-321 119-172 (196)
146 1iqp_A RFCS; clamp loader, ext 91.9 0.42 1.4E-05 48.5 8.9 39 270-309 109-147 (327)
147 3cf0_A Transitional endoplasmi 91.7 0.38 1.3E-05 48.8 8.1 17 162-178 49-65 (301)
148 2qz4_A Paraplegin; AAA+, SPG7, 91.5 0.9 3.1E-05 44.5 10.5 17 162-178 39-55 (262)
149 3hjh_A Transcription-repair-co 91.3 0.48 1.6E-05 51.5 8.8 52 161-221 13-64 (483)
150 2qby_A CDC6 homolog 1, cell di 91.3 0.7 2.4E-05 48.0 9.9 17 162-178 45-61 (386)
151 1jr3_A DNA polymerase III subu 91.2 0.76 2.6E-05 47.7 10.1 39 269-308 117-155 (373)
152 1sxj_D Activator 1 41 kDa subu 91.1 0.26 8.9E-06 50.9 6.3 38 271-309 133-170 (353)
153 3vfd_A Spastin; ATPase, microt 91.1 0.45 1.5E-05 50.2 8.1 17 162-178 148-164 (389)
154 3pfi_A Holliday junction ATP-d 90.7 0.57 2E-05 48.1 8.4 16 163-178 56-71 (338)
155 3b9p_A CG5977-PA, isoform A; A 90.6 0.37 1.3E-05 48.5 6.8 17 162-178 54-70 (297)
156 1xwi_A SKD1 protein; VPS4B, AA 90.6 0.31 1.1E-05 50.0 6.2 49 124-178 8-61 (322)
157 2eyq_A TRCF, transcription-rep 89.5 1.6 5.3E-05 52.9 11.9 78 369-446 651-733 (1151)
158 1sxj_C Activator 1 40 kDa subu 89.3 0.52 1.8E-05 48.6 6.7 39 270-309 109-147 (340)
159 4b4t_J 26S protease regulatory 88.9 2.1 7.1E-05 45.1 10.9 53 123-178 143-198 (405)
160 1sxj_B Activator 1 37 kDa subu 88.9 0.99 3.4E-05 45.6 8.4 38 271-309 107-144 (323)
161 2w0m_A SSO2452; RECA, SSPF, un 88.9 0.57 1.9E-05 44.9 6.3 18 161-178 22-39 (235)
162 3hu3_A Transitional endoplasmi 88.8 1.6 5.5E-05 47.4 10.4 43 272-314 298-350 (489)
163 2zan_A Vacuolar protein sortin 88.8 0.65 2.2E-05 49.9 7.2 49 124-178 130-183 (444)
164 2hjv_A ATP-dependent RNA helic 88.7 2.1 7.2E-05 38.7 9.7 73 196-279 35-111 (163)
165 4ddu_A Reverse gyrase; topoiso 88.6 0.93 3.2E-05 54.5 9.0 80 368-447 119-205 (1104)
166 1t6n_A Probable ATP-dependent 88.6 2.1 7.2E-05 40.6 10.1 74 370-446 82-166 (220)
167 1n0w_A DNA repair protein RAD5 88.4 1.6 5.4E-05 42.1 9.2 17 162-178 24-40 (243)
168 2r6a_A DNAB helicase, replicat 88.3 1.6 5.3E-05 47.0 9.9 38 162-204 203-240 (454)
169 1sxj_A Activator 1 95 kDa subu 88.3 1.4 4.9E-05 48.2 9.7 40 271-312 148-189 (516)
170 2p6n_A ATP-dependent RNA helic 88.0 2.4 8.3E-05 39.6 9.9 70 197-277 55-128 (191)
171 2rb4_A ATP-dependent RNA helic 88.0 2.3 7.7E-05 38.9 9.5 71 196-277 34-108 (175)
172 2ehv_A Hypothetical protein PH 87.8 0.24 8.2E-06 48.3 2.8 45 270-314 134-183 (251)
173 1hqc_A RUVB; extended AAA-ATPa 87.6 0.76 2.6E-05 46.7 6.5 17 162-178 38-54 (324)
174 3pvs_A Replication-associated 87.3 0.54 1.8E-05 50.6 5.4 16 163-178 51-66 (447)
175 1w5s_A Origin recognition comp 87.0 0.95 3.2E-05 47.6 7.1 24 163-187 51-76 (412)
176 2q6t_A DNAB replication FORK h 87.0 1 3.4E-05 48.4 7.3 113 162-286 200-325 (444)
177 1fuk_A Eukaryotic initiation f 86.9 2.8 9.7E-05 37.8 9.4 73 196-279 30-106 (165)
178 2v1x_A ATP-dependent DNA helic 86.7 1.2 4.1E-05 49.7 8.0 75 370-444 84-171 (591)
179 4b4t_H 26S protease regulatory 86.6 0.68 2.3E-05 49.6 5.5 53 123-178 204-259 (467)
180 3eaq_A Heat resistant RNA depe 86.5 2.8 9.7E-05 39.8 9.6 71 196-277 31-105 (212)
181 2dr3_A UPF0273 protein PH0284; 86.5 0.65 2.2E-05 45.0 5.1 50 161-217 22-71 (247)
182 2chq_A Replication factor C sm 86.2 0.28 9.5E-06 49.7 2.3 15 164-178 40-54 (319)
183 2gno_A DNA polymerase III, gam 86.0 2.8 9.6E-05 42.4 9.7 40 269-309 80-119 (305)
184 3ber_A Probable ATP-dependent 85.9 4.1 0.00014 39.6 10.6 73 369-445 110-193 (249)
185 3e70_C DPA, signal recognition 85.8 4.9 0.00017 41.1 11.4 52 272-323 212-264 (328)
186 1vma_A Cell division protein F 85.7 4 0.00014 41.3 10.6 16 163-178 105-120 (306)
187 2fna_A Conserved hypothetical 85.7 14 0.00049 37.2 15.2 52 254-311 124-178 (357)
188 4b4t_K 26S protease regulatory 85.6 4 0.00014 43.4 10.9 53 123-178 167-222 (428)
189 3k1j_A LON protease, ATP-depen 85.4 5.1 0.00017 44.7 12.3 32 155-188 53-84 (604)
190 4b4t_L 26S protease subunit RP 84.7 0.85 2.9E-05 48.7 5.2 53 123-178 176-231 (437)
191 1t5i_A C_terminal domain of A 84.6 2.9 0.0001 38.2 8.3 88 196-298 31-122 (172)
192 3fe2_A Probable ATP-dependent 84.5 3.5 0.00012 39.8 9.3 74 369-446 101-184 (242)
193 4b4t_I 26S protease regulatory 83.5 1.2 4.1E-05 47.2 5.6 53 123-178 177-232 (437)
194 1oyw_A RECQ helicase, ATP-depe 83.2 2.5 8.5E-05 46.4 8.4 75 370-444 65-145 (523)
195 3co5_A Putative two-component 83.2 0.74 2.5E-05 40.8 3.4 21 158-178 23-43 (143)
196 2px0_A Flagellar biosynthesis 83.1 2.1 7.3E-05 43.1 7.2 17 162-178 105-121 (296)
197 2z43_A DNA repair and recombin 83.1 1.3 4.6E-05 45.2 5.8 63 155-218 95-164 (324)
198 2zts_A Putative uncharacterize 82.5 0.76 2.6E-05 44.6 3.5 17 162-178 30-46 (251)
199 2oxc_A Probable ATP-dependent 82.4 4 0.00014 39.0 8.7 71 369-444 91-172 (230)
200 1qvr_A CLPB protein; coiled co 82.0 2 6.9E-05 50.2 7.4 16 163-178 192-207 (854)
201 1vec_A ATP-dependent RNA helic 82.0 5.9 0.0002 36.8 9.6 72 369-444 70-152 (206)
202 3m6a_A ATP-dependent protease 81.3 1.4 4.8E-05 48.6 5.5 25 161-187 107-131 (543)
203 1ls1_A Signal recognition part 80.9 5.4 0.00018 40.1 9.3 46 271-316 180-226 (295)
204 3cmu_A Protein RECA, recombina 80.7 1.4 4.9E-05 55.5 5.6 45 156-206 1415-1465(2050)
205 3pxi_A Negative regulator of g 80.7 1.5 5.3E-05 50.5 5.7 15 164-178 523-537 (758)
206 3bor_A Human initiation factor 80.3 4.4 0.00015 38.9 8.2 74 369-445 97-180 (237)
207 2oap_1 GSPE-2, type II secreti 80.2 1.5 5.2E-05 47.9 5.2 39 138-178 237-276 (511)
208 4a1f_A DNAB helicase, replicat 80.1 1.6 5.6E-05 44.9 5.1 38 162-205 46-83 (338)
209 2jgn_A DBX, DDX3, ATP-dependen 79.9 2.7 9.2E-05 39.0 6.1 89 171-277 28-120 (185)
210 2pl3_A Probable ATP-dependent 79.8 4.2 0.00014 39.0 7.8 72 369-445 96-178 (236)
211 2i4i_A ATP-dependent RNA helic 79.5 8.3 0.00028 40.2 10.6 72 195-277 275-350 (417)
212 1xti_A Probable ATP-dependent 79.1 7.9 0.00027 39.9 10.3 72 370-444 76-158 (391)
213 2xxa_A Signal recognition part 79.0 4.6 0.00016 43.0 8.3 23 164-187 102-124 (433)
214 1p9r_A General secretion pathw 78.7 2 6.7E-05 45.7 5.3 28 151-178 154-183 (418)
215 1ypw_A Transitional endoplasmi 78.6 6.6 0.00022 45.5 10.1 17 162-178 238-254 (806)
216 3i5x_A ATP-dependent RNA helic 78.5 14 0.00048 40.5 12.5 76 196-279 339-418 (563)
217 2gxq_A Heat resistant RNA depe 78.0 7.3 0.00025 36.2 8.7 73 369-445 71-151 (207)
218 3iuy_A Probable ATP-dependent 77.8 5 0.00017 38.2 7.6 73 369-445 93-174 (228)
219 3bh0_A DNAB-like replicative h 77.4 3.2 0.00011 42.1 6.4 38 162-205 68-105 (315)
220 3fht_A ATP-dependent RNA helic 77.3 7.9 0.00027 40.2 9.6 71 196-277 266-340 (412)
221 3b85_A Phosphate starvation-in 77.2 2.1 7.1E-05 40.7 4.5 40 146-187 6-45 (208)
222 2i1q_A DNA repair and recombin 76.8 3.4 0.00012 41.9 6.4 17 162-178 98-114 (322)
223 3pey_A ATP-dependent RNA helic 76.5 46 0.0016 33.8 15.3 77 195-282 242-322 (395)
224 3i32_A Heat resistant RNA depe 76.3 6.4 0.00022 39.6 8.1 71 196-277 28-102 (300)
225 1r6b_X CLPA protein; AAA+, N-t 76.2 4.9 0.00017 46.2 8.2 17 162-178 207-223 (758)
226 3lda_A DNA repair protein RAD5 75.6 4.4 0.00015 42.7 6.9 42 163-204 179-220 (400)
227 3cf2_A TER ATPase, transitiona 75.0 2.1 7.3E-05 49.3 4.6 53 123-178 472-527 (806)
228 3sqw_A ATP-dependent RNA helic 74.9 10 0.00035 41.9 10.1 77 196-280 288-368 (579)
229 1qde_A EIF4A, translation init 74.1 5.4 0.00019 37.7 6.7 72 368-444 80-161 (224)
230 2yhs_A FTSY, cell division pro 73.1 5.4 0.00019 43.1 6.9 33 164-202 295-327 (503)
231 1s2m_A Putative ATP-dependent 72.8 14 0.00048 38.2 10.1 71 196-277 258-332 (400)
232 1hv8_A Putative ATP-dependent 72.4 9.7 0.00033 38.7 8.6 72 196-278 238-313 (367)
233 1wrb_A DJVLGB; RNA helicase, D 72.3 10 0.00035 36.6 8.3 72 370-445 100-181 (253)
234 3ly5_A ATP-dependent RNA helic 72.3 13 0.00045 36.2 9.2 73 369-445 125-208 (262)
235 3cf2_A TER ATPase, transitiona 72.0 7.5 0.00026 44.7 8.1 43 271-313 297-349 (806)
236 1e9r_A Conjugal transfer prote 72.0 1.9 6.5E-05 46.0 3.1 44 161-210 52-95 (437)
237 1w36_B RECB, exodeoxyribonucle 71.9 3.5 0.00012 50.1 5.7 56 164-219 18-79 (1180)
238 2l8b_A Protein TRAI, DNA helic 71.7 4.1 0.00014 37.7 4.7 58 149-211 36-95 (189)
239 2eyu_A Twitching motility prot 71.3 1.5 5.2E-05 43.3 2.0 27 160-188 23-49 (261)
240 2gza_A Type IV secretion syste 71.1 1.9 6.3E-05 44.9 2.7 27 159-187 172-198 (361)
241 2j0s_A ATP-dependent RNA helic 70.9 16 0.00056 37.8 10.1 71 196-277 276-350 (410)
242 2ffh_A Protein (FFH); SRP54, s 70.7 24 0.00082 37.3 11.2 16 163-178 99-114 (425)
243 1lvg_A Guanylate kinase, GMP k 70.4 2.1 7.2E-05 40.2 2.6 26 161-188 3-28 (198)
244 2xau_A PRE-mRNA-splicing facto 70.3 11 0.00038 43.3 9.2 75 196-277 303-393 (773)
245 4b4t_M 26S protease regulatory 70.2 1.2 4.3E-05 47.4 1.1 53 123-178 176-231 (434)
246 2pt7_A CAG-ALFA; ATPase, prote 70.2 2 6.9E-05 44.0 2.7 27 160-188 169-195 (330)
247 3nwn_A Kinesin-like protein KI 69.9 2.7 9.4E-05 43.5 3.6 25 155-179 96-122 (359)
248 1kgd_A CASK, peripheral plasma 69.6 1.8 6E-05 39.9 1.9 19 160-178 3-21 (180)
249 1bg2_A Kinesin; motor protein, 69.2 3.1 0.00011 42.4 3.8 25 155-179 69-95 (325)
250 2d7d_A Uvrabc system protein B 69.1 11 0.00039 42.4 8.8 77 196-283 445-525 (661)
251 3fmo_B ATP-dependent RNA helic 68.9 9 0.00031 38.4 7.2 70 370-446 162-243 (300)
252 2r44_A Uncharacterized protein 68.7 2.6 9E-05 42.9 3.2 25 154-178 38-62 (331)
253 4ag6_A VIRB4 ATPase, type IV s 68.2 2.8 9.6E-05 44.0 3.3 42 161-208 34-75 (392)
254 1q0u_A Bstdead; DEAD protein, 68.1 5.6 0.00019 37.5 5.2 72 369-444 71-156 (219)
255 2v6i_A RNA helicase; membrane, 68.1 5.8 0.0002 42.1 5.8 55 196-254 171-225 (431)
256 2db3_A ATP-dependent RNA helic 67.8 16 0.00055 38.6 9.3 68 199-277 303-374 (434)
257 2bjv_A PSP operon transcriptio 67.7 7.3 0.00025 38.0 6.1 18 161-178 28-45 (265)
258 2h58_A Kinesin-like protein KI 67.5 3.6 0.00012 42.1 3.8 26 154-179 71-98 (330)
259 1wp9_A ATP-dependent RNA helic 67.3 15 0.00052 38.6 9.1 95 171-280 340-446 (494)
260 3dc4_A Kinesin-like protein NO 67.1 3.3 0.00011 42.7 3.4 25 155-179 86-112 (344)
261 2y65_A Kinesin, kinesin heavy 67.0 3.7 0.00012 42.7 3.8 25 155-179 76-102 (365)
262 2vvg_A Kinesin-2; motor protei 67.0 3.7 0.00013 42.4 3.8 25 155-179 81-107 (350)
263 2zfi_A Kinesin-like protein KI 66.9 3.7 0.00013 42.7 3.8 26 154-179 80-107 (366)
264 3vaa_A Shikimate kinase, SK; s 66.9 2.3 7.7E-05 39.8 2.0 18 161-178 24-41 (199)
265 3hws_A ATP-dependent CLP prote 66.8 6.4 0.00022 40.6 5.7 18 161-178 50-67 (363)
266 1yks_A Genome polyprotein [con 66.7 6.7 0.00023 41.8 6.0 69 196-276 177-245 (440)
267 1goj_A Kinesin, kinesin heavy 66.7 3.6 0.00012 42.5 3.7 25 155-179 72-98 (355)
268 1t5c_A CENP-E protein, centrom 66.5 3.6 0.00012 42.5 3.6 25 155-179 69-95 (349)
269 3lre_A Kinesin-like protein KI 66.5 3.6 0.00012 42.5 3.7 25 155-179 97-123 (355)
270 1gku_B Reverse gyrase, TOP-RG; 66.4 10 0.00035 45.4 8.0 74 369-444 98-181 (1054)
271 2nr8_A Kinesin-like protein KI 66.3 3.6 0.00012 42.6 3.6 26 154-179 94-121 (358)
272 3gbj_A KIF13B protein; kinesin 66.2 3.6 0.00012 42.6 3.5 26 154-179 83-110 (354)
273 3b6u_A Kinesin-like protein KI 66.2 3.6 0.00012 42.8 3.6 25 155-179 93-119 (372)
274 1zu4_A FTSY; GTPase, signal re 65.7 8.4 0.00029 39.2 6.2 16 163-178 106-121 (320)
275 1tue_A Replication protein E1; 65.6 5.4 0.00018 37.8 4.3 51 134-187 28-82 (212)
276 3trf_A Shikimate kinase, SK; a 65.5 2.4 8.4E-05 38.8 2.0 17 162-178 5-21 (185)
277 2wv9_A Flavivirin protease NS2 65.4 8.3 0.00028 43.6 6.6 69 196-276 410-478 (673)
278 1ofh_A ATP-dependent HSL prote 65.4 9 0.00031 38.1 6.4 17 162-178 50-66 (310)
279 2qor_A Guanylate kinase; phosp 65.3 2.2 7.6E-05 40.1 1.7 20 159-178 9-28 (204)
280 1c4o_A DNA nucleotide excision 65.3 16 0.00055 41.2 9.0 77 196-283 439-519 (664)
281 1fuu_A Yeast initiation factor 65.1 21 0.00071 36.6 9.4 72 369-445 88-169 (394)
282 3jvv_A Twitching mobility prot 65.0 2.6 8.8E-05 43.8 2.2 18 161-178 122-139 (356)
283 2wbe_C Bipolar kinesin KRP-130 65.0 3.8 0.00013 42.7 3.5 26 154-179 91-118 (373)
284 2v9p_A Replication protein E1; 65.0 3 0.0001 42.2 2.6 26 161-188 125-150 (305)
285 3nbx_X ATPase RAVA; AAA+ ATPas 64.9 3.2 0.00011 45.2 3.0 30 149-178 28-57 (500)
286 3lw7_A Adenylate kinase relate 64.8 2.5 8.6E-05 38.0 1.9 15 164-178 3-17 (179)
287 1x88_A Kinesin-like protein KI 64.8 3.5 0.00012 42.7 3.2 26 154-179 79-106 (359)
288 4a14_A Kinesin, kinesin-like p 64.6 4.3 0.00015 41.8 3.7 25 155-179 75-101 (344)
289 1v8k_A Kinesin-like protein KI 64.6 3.6 0.00012 43.4 3.2 25 155-179 146-172 (410)
290 2ewv_A Twitching motility prot 64.5 2.4 8.3E-05 44.2 1.9 26 161-188 135-160 (372)
291 3iij_A Coilin-interacting nucl 64.4 1.9 6.6E-05 39.5 1.0 18 161-178 10-27 (180)
292 3cob_A Kinesin heavy chain-lik 64.2 3.3 0.00011 43.0 2.8 25 155-179 71-97 (369)
293 3tau_A Guanylate kinase, GMP k 64.2 2.7 9.3E-05 39.7 2.0 18 161-178 7-24 (208)
294 1qhx_A CPT, protein (chloramph 64.2 2.7 9.2E-05 38.2 1.9 17 162-178 3-19 (178)
295 4etp_A Kinesin-like protein KA 64.0 3.9 0.00013 43.1 3.4 25 155-179 132-158 (403)
296 2yjt_D ATP-dependent RNA helic 67.7 1.4 4.9E-05 40.1 0.0 71 196-277 30-104 (170)
297 2j37_W Signal recognition part 63.9 19 0.00065 39.0 8.9 23 164-187 103-125 (504)
298 2owm_A Nckin3-434, related to 63.7 4.5 0.00015 43.1 3.8 26 154-179 127-154 (443)
299 3bfn_A Kinesin-like protein KI 63.6 3.5 0.00012 43.1 2.9 24 156-179 91-116 (388)
300 2heh_A KIF2C protein; kinesin, 63.5 4 0.00014 42.6 3.3 25 155-179 126-152 (387)
301 1u0j_A DNA replication protein 63.4 7.8 0.00027 38.2 5.2 43 134-179 73-121 (267)
302 3u06_A Protein claret segregat 63.2 4.3 0.00015 42.9 3.5 26 154-179 129-156 (412)
303 2ze6_A Isopentenyl transferase 63.0 2.8 9.5E-05 41.1 1.9 14 165-178 4-17 (253)
304 4a2p_A RIG-I, retinoic acid in 62.6 16 0.00054 39.7 8.2 71 370-444 55-136 (556)
305 1z6g_A Guanylate kinase; struc 62.5 3.8 0.00013 39.1 2.7 26 160-187 21-46 (218)
306 1tf5_A Preprotein translocase 62.5 18 0.00062 41.5 8.6 71 367-443 121-208 (844)
307 2j41_A Guanylate kinase; GMP, 62.3 3 0.0001 39.0 1.9 18 161-178 5-22 (207)
308 3foz_A TRNA delta(2)-isopenten 62.2 3 0.0001 42.2 2.0 22 164-186 12-33 (316)
309 3cmw_A Protein RECA, recombina 61.7 8 0.00027 48.2 5.9 122 163-316 1432-1571(1706)
310 2jlq_A Serine protease subunit 61.6 12 0.0004 40.0 6.7 68 197-276 189-256 (451)
311 1kag_A SKI, shikimate kinase I 61.5 3.7 0.00013 37.0 2.4 23 162-186 4-26 (173)
312 3exa_A TRNA delta(2)-isopenten 61.4 3.1 0.00011 42.2 1.9 15 164-178 5-19 (322)
313 1q57_A DNA primase/helicase; d 61.2 12 0.0004 40.6 6.7 38 162-204 242-279 (503)
314 2v3c_C SRP54, signal recogniti 61.2 5 0.00017 42.7 3.6 16 163-178 100-115 (432)
315 1f9v_A Kinesin-like protein KA 61.1 3.7 0.00013 42.3 2.5 25 155-179 76-102 (347)
316 3a8t_A Adenylate isopentenyltr 61.1 3.2 0.00011 42.5 2.0 16 163-178 41-56 (339)
317 1zp6_A Hypothetical protein AT 60.9 2.7 9.1E-05 38.8 1.3 18 161-178 8-25 (191)
318 3eiq_A Eukaryotic initiation f 60.7 32 0.0011 35.5 9.9 74 369-445 107-190 (414)
319 1j8m_F SRP54, signal recogniti 60.6 15 0.0005 36.8 6.9 15 164-178 100-114 (297)
320 3tr0_A Guanylate kinase, GMP k 60.5 3.5 0.00012 38.4 2.0 25 161-187 6-30 (205)
321 1y63_A LMAJ004144AAA protein; 60.5 3.5 0.00012 38.0 2.0 18 161-178 9-26 (184)
322 1kht_A Adenylate kinase; phosp 60.4 3.4 0.00012 37.9 1.9 17 162-178 3-19 (192)
323 3dkp_A Probable ATP-dependent 60.2 5.4 0.00018 38.4 3.4 75 369-446 97-183 (245)
324 3a00_A Guanylate kinase, GMP k 60.1 3.9 0.00013 37.7 2.3 23 163-187 2-24 (186)
325 2rep_A Kinesin-like protein KI 59.4 4.2 0.00014 42.3 2.6 25 155-179 107-133 (376)
326 3t0q_A AGR253WP; kinesin, alph 59.2 4.3 0.00015 41.9 2.6 25 155-179 77-103 (349)
327 1ly1_A Polynucleotide kinase; 59.2 3.7 0.00013 37.2 1.9 15 164-178 4-18 (181)
328 2ius_A DNA translocase FTSK; n 59.1 8.3 0.00028 41.9 5.0 27 161-188 166-192 (512)
329 1znw_A Guanylate kinase, GMP k 59.1 4.2 0.00014 38.2 2.3 29 158-188 16-44 (207)
330 3ney_A 55 kDa erythrocyte memb 59.1 3.7 0.00013 38.6 1.9 19 160-178 17-35 (197)
331 3tbk_A RIG-I helicase domain; 59.0 12 0.0004 40.6 6.4 71 370-444 52-133 (555)
332 1ry6_A Internal kinesin; kines 58.9 5 0.00017 41.5 3.1 19 161-179 82-102 (360)
333 1rj9_A FTSY, signal recognitio 58.6 5.8 0.0002 40.0 3.4 26 162-189 102-127 (304)
334 1nkt_A Preprotein translocase 58.5 23 0.00077 41.0 8.5 72 367-444 149-237 (922)
335 2fsf_A Preprotein translocase 58.3 20 0.00069 41.1 8.0 71 368-444 113-200 (853)
336 2qmh_A HPR kinase/phosphorylas 58.0 3.5 0.00012 38.9 1.5 17 162-178 34-50 (205)
337 3kb2_A SPBC2 prophage-derived 58.0 3.9 0.00013 36.7 1.9 15 164-178 3-17 (173)
338 3nwj_A ATSK2; P loop, shikimat 57.9 5 0.00017 39.3 2.7 20 159-178 45-64 (250)
339 2r62_A Cell division protease 57.8 5.3 0.00018 39.1 2.9 17 162-178 44-60 (268)
340 4gp7_A Metallophosphoesterase; 57.3 3.6 0.00012 37.4 1.5 18 162-179 9-26 (171)
341 3d3q_A TRNA delta(2)-isopenten 57.1 4.4 0.00015 41.6 2.2 15 164-178 9-23 (340)
342 2x8a_A Nuclear valosin-contain 56.9 5.1 0.00018 39.7 2.7 52 124-178 6-60 (274)
343 3cm0_A Adenylate kinase; ATP-b 56.9 3.1 0.00011 38.1 1.0 18 161-178 3-20 (186)
344 1s96_A Guanylate kinase, GMP k 56.8 4.4 0.00015 38.8 2.0 26 159-186 13-38 (219)
345 4eun_A Thermoresistant glucoki 56.7 4.4 0.00015 37.8 2.0 24 161-186 28-51 (200)
346 3c8u_A Fructokinase; YP_612366 56.6 4.3 0.00015 38.2 2.0 25 162-188 22-46 (208)
347 3u4q_B ATP-dependent helicase/ 56.4 5.1 0.00017 48.6 3.0 32 371-402 343-375 (1166)
348 1ojl_A Transcriptional regulat 56.4 6.1 0.00021 39.8 3.2 18 161-178 24-41 (304)
349 2ipc_A Preprotein translocase 55.9 33 0.0011 39.8 9.2 58 366-429 116-177 (997)
350 4gl2_A Interferon-induced heli 55.8 17 0.00057 41.1 7.1 106 196-312 400-519 (699)
351 1ex7_A Guanylate kinase; subst 55.7 5.3 0.00018 37.2 2.3 16 163-178 2-17 (186)
352 3uk6_A RUVB-like 2; hexameric 55.6 4.7 0.00016 41.5 2.2 25 162-187 70-94 (368)
353 1lv7_A FTSH; alpha/beta domain 55.6 4.3 0.00015 39.5 1.8 17 162-178 45-61 (257)
354 2oca_A DAR protein, ATP-depend 55.5 73 0.0025 34.0 12.0 74 198-281 349-426 (510)
355 1v5w_A DMC1, meiotic recombina 55.3 6.3 0.00021 40.5 3.1 50 156-206 111-166 (343)
356 1knq_A Gluconate kinase; ALFA/ 55.1 4.1 0.00014 36.9 1.5 17 162-178 8-24 (175)
357 3eph_A TRNA isopentenyltransfe 54.7 4.9 0.00017 42.2 2.1 21 165-186 5-25 (409)
358 1ye8_A Protein THEP1, hypothet 54.6 5.7 0.00019 36.5 2.4 22 164-187 2-23 (178)
359 3tif_A Uncharacterized ABC tra 54.6 5.4 0.00019 38.5 2.3 25 161-187 30-54 (235)
360 2whx_A Serine protease/ntpase/ 54.5 20 0.00069 39.9 7.3 69 196-276 355-423 (618)
361 1m7g_A Adenylylsulfate kinase; 54.4 6.3 0.00021 37.1 2.7 30 148-178 12-41 (211)
362 3crm_A TRNA delta(2)-isopenten 54.3 4.7 0.00016 41.0 1.9 15 164-178 7-21 (323)
363 4akg_A Glutathione S-transfera 54.2 11 0.00036 49.5 5.4 47 132-179 890-940 (2695)
364 2iut_A DNA translocase FTSK; n 53.7 12 0.0004 41.2 5.0 43 162-206 214-256 (574)
365 3t61_A Gluconokinase; PSI-biol 53.2 5.3 0.00018 37.2 1.9 16 163-178 19-34 (202)
366 2bdt_A BH3686; alpha-beta prot 53.2 5.3 0.00018 36.7 1.9 15 164-178 4-18 (189)
367 3o8b_A HCV NS3 protease/helica 53.0 19 0.00066 40.4 6.7 67 195-276 395-461 (666)
368 2c95_A Adenylate kinase 1; tra 52.9 5.7 0.00019 36.5 2.1 19 160-178 7-25 (196)
369 2z0m_A 337AA long hypothetical 52.3 27 0.00093 34.7 7.4 70 370-444 56-135 (337)
370 2v54_A DTMP kinase, thymidylat 51.6 6 0.0002 36.7 2.0 18 161-178 3-20 (204)
371 3kta_A Chromosome segregation 51.6 6.1 0.00021 36.0 2.1 22 164-187 28-49 (182)
372 3nh6_A ATP-binding cassette SU 51.5 5.9 0.0002 40.0 2.1 25 161-187 79-103 (306)
373 4a2q_A RIG-I, retinoic acid in 51.5 26 0.00088 40.4 7.8 71 370-444 296-377 (797)
374 2rhm_A Putative kinase; P-loop 51.4 5.5 0.00019 36.6 1.7 17 162-178 5-21 (193)
375 1nij_A Hypothetical protein YJ 51.3 7.7 0.00026 39.3 3.0 14 165-178 7-20 (318)
376 2i3b_A HCR-ntpase, human cance 51.1 8 0.00027 35.9 2.8 42 269-313 103-146 (189)
377 1tev_A UMP-CMP kinase; ploop, 50.9 6 0.00021 36.2 1.9 16 163-178 4-19 (196)
378 1gvn_B Zeta; postsegregational 50.8 5.8 0.0002 39.6 1.9 16 163-178 34-49 (287)
379 1um8_A ATP-dependent CLP prote 50.8 6.5 0.00022 40.8 2.3 17 162-178 72-88 (376)
380 3asz_A Uridine kinase; cytidin 50.6 6.6 0.00023 36.7 2.2 24 162-187 6-29 (211)
381 1via_A Shikimate kinase; struc 50.5 6.8 0.00023 35.5 2.2 16 163-178 5-20 (175)
382 4a74_A DNA repair and recombin 50.5 6.9 0.00024 36.9 2.4 17 162-178 25-41 (231)
383 3lnc_A Guanylate kinase, GMP k 50.5 5.4 0.00018 38.1 1.5 18 161-178 26-43 (231)
384 1zuh_A Shikimate kinase; alpha 50.4 6.1 0.00021 35.5 1.8 16 163-178 8-23 (168)
385 3b9q_A Chloroplast SRP recepto 50.4 7.2 0.00025 39.3 2.5 26 162-189 100-125 (302)
386 3uie_A Adenylyl-sulfate kinase 50.1 5.6 0.00019 37.1 1.6 18 161-178 24-41 (200)
387 3vkg_A Dynein heavy chain, cyt 49.9 19 0.00066 47.7 6.8 78 132-213 873-954 (3245)
388 1f2t_A RAD50 ABC-ATPase; DNA d 49.8 7.7 0.00026 34.4 2.4 15 164-178 25-39 (149)
389 1nks_A Adenylate kinase; therm 49.4 6 0.00021 36.1 1.7 15 164-178 3-17 (194)
390 1g8p_A Magnesium-chelatase 38 49.3 8.7 0.0003 39.1 3.0 17 162-178 45-61 (350)
391 3t15_A Ribulose bisphosphate c 49.2 5.9 0.0002 39.6 1.7 16 163-178 37-52 (293)
392 1ixz_A ATP-dependent metallopr 49.2 6.5 0.00022 38.1 1.9 52 124-178 12-65 (254)
393 1xjc_A MOBB protein homolog; s 48.9 13 0.00045 33.8 3.8 22 165-187 7-28 (169)
394 4fcw_A Chaperone protein CLPB; 48.8 7.7 0.00026 38.7 2.5 15 164-178 49-63 (311)
395 2l82_A Designed protein OR32; 48.6 63 0.0021 26.5 7.3 112 373-489 5-125 (162)
396 3qf7_A RAD50; ABC-ATPase, ATPa 48.5 6.6 0.00022 40.8 1.9 16 164-179 25-40 (365)
397 2c9o_A RUVB-like 1; hexameric 48.5 6.5 0.00022 42.1 1.9 17 162-178 63-79 (456)
398 1aky_A Adenylate kinase; ATP:A 48.5 6.9 0.00024 37.0 1.9 17 162-178 4-20 (220)
399 2plr_A DTMP kinase, probable t 48.2 5.8 0.0002 36.9 1.4 18 161-178 3-20 (213)
400 1tf7_A KAIC; homohexamer, hexa 47.8 33 0.0011 37.2 7.6 123 161-310 280-414 (525)
401 2bwj_A Adenylate kinase 5; pho 47.8 6.9 0.00024 36.0 1.8 18 161-178 11-28 (199)
402 1zak_A Adenylate kinase; ATP:A 47.7 7.7 0.00026 36.7 2.2 17 162-178 5-21 (222)
403 2iyv_A Shikimate kinase, SK; t 47.5 8.5 0.00029 35.0 2.4 16 163-178 3-18 (184)
404 3fb4_A Adenylate kinase; psych 47.5 7.3 0.00025 36.6 1.9 14 165-178 3-16 (216)
405 2ff7_A Alpha-hemolysin translo 47.3 8.3 0.00028 37.5 2.3 25 161-187 34-58 (247)
406 2ykg_A Probable ATP-dependent 47.3 14 0.00048 41.6 4.7 76 196-278 398-486 (696)
407 3b6e_A Interferon-induced heli 47.3 14 0.00049 34.2 4.0 72 369-444 81-168 (216)
408 1zd8_A GTP:AMP phosphotransfer 47.2 6.8 0.00023 37.3 1.7 17 162-178 7-23 (227)
409 1e6c_A Shikimate kinase; phosp 47.2 8.2 0.00028 34.6 2.2 16 163-178 3-18 (173)
410 3rc3_A ATP-dependent RNA helic 47.1 42 0.0014 37.8 8.4 72 200-283 324-401 (677)
411 3d8b_A Fidgetin-like protein 1 47.0 7.2 0.00025 40.2 1.9 17 162-178 117-133 (357)
412 2r8r_A Sensor protein; KDPD, P 47.0 13 0.00045 35.6 3.6 25 164-189 8-32 (228)
413 2jaq_A Deoxyguanosine kinase; 46.9 7.5 0.00026 35.9 1.9 14 165-178 3-16 (205)
414 1ak2_A Adenylate kinase isoenz 46.8 7.4 0.00025 37.3 1.9 17 162-178 16-32 (233)
415 1qf9_A UMP/CMP kinase, protein 46.7 7.2 0.00024 35.6 1.7 15 164-178 8-22 (194)
416 2pez_A Bifunctional 3'-phospho 46.7 6.8 0.00023 35.6 1.5 25 161-187 4-28 (179)
417 3l9o_A ATP-dependent RNA helic 46.7 28 0.00094 41.8 7.1 65 369-444 226-296 (1108)
418 2va8_A SSO2462, SKI2-type heli 46.5 49 0.0017 37.3 9.1 75 196-277 252-362 (715)
419 2yvu_A Probable adenylyl-sulfa 46.4 6.9 0.00024 35.8 1.5 17 162-178 13-29 (186)
420 1ukz_A Uridylate kinase; trans 46.2 7.9 0.00027 35.9 1.9 15 164-178 17-31 (203)
421 1in4_A RUVB, holliday junction 46.1 8.3 0.00028 39.3 2.2 16 163-178 52-67 (334)
422 3dl0_A Adenylate kinase; phosp 45.8 8 0.00027 36.3 1.9 14 165-178 3-16 (216)
423 3gk5_A Uncharacterized rhodane 45.6 13 0.00045 30.7 3.1 37 369-405 54-90 (108)
424 2f1r_A Molybdopterin-guanine d 45.6 6.6 0.00022 35.9 1.2 23 165-189 5-27 (171)
425 2z83_A Helicase/nucleoside tri 45.5 16 0.00056 39.0 4.5 55 196-254 190-244 (459)
426 1cke_A CK, MSSA, protein (cyti 45.4 8.2 0.00028 36.5 1.9 16 163-178 6-21 (227)
427 2zr9_A Protein RECA, recombina 45.2 13 0.00045 38.2 3.6 37 162-204 61-97 (349)
428 1htw_A HI0065; nucleotide-bind 45.1 8.7 0.0003 34.5 2.0 26 161-188 32-57 (158)
429 2og2_A Putative signal recogni 45.0 9.5 0.00033 39.4 2.5 25 163-189 158-182 (359)
430 3foj_A Uncharacterized protein 44.8 14 0.00047 30.0 3.0 37 369-405 55-91 (100)
431 2pt5_A Shikimate kinase, SK; a 44.8 8.6 0.0003 34.3 1.9 15 164-178 2-16 (168)
432 3tqc_A Pantothenate kinase; bi 44.7 26 0.00087 35.5 5.6 23 165-189 95-117 (321)
433 2pbr_A DTMP kinase, thymidylat 44.7 8.6 0.00029 35.1 1.9 14 165-178 3-16 (195)
434 2cdn_A Adenylate kinase; phosp 44.6 5.8 0.0002 36.9 0.7 16 163-178 21-36 (201)
435 1jjv_A Dephospho-COA kinase; P 44.5 8.6 0.00029 35.8 1.9 14 165-178 5-18 (206)
436 1u94_A RECA protein, recombina 44.5 15 0.0005 37.9 3.8 38 161-204 62-99 (356)
437 2vli_A Antibiotic resistance p 44.4 7.3 0.00025 35.3 1.3 17 162-178 5-21 (183)
438 3p32_A Probable GTPase RV1496/ 44.4 1.7E+02 0.0057 29.7 12.0 15 164-178 81-95 (355)
439 3a4m_A L-seryl-tRNA(SEC) kinas 44.4 8.5 0.00029 37.6 1.9 16 163-178 5-20 (260)
440 2r2a_A Uncharacterized protein 44.4 9.4 0.00032 35.8 2.1 15 165-179 8-22 (199)
441 3sr0_A Adenylate kinase; phosp 44.3 8.9 0.0003 36.2 1.9 14 165-178 3-16 (206)
442 2ixe_A Antigen peptide transpo 44.2 9.8 0.00034 37.6 2.3 40 270-309 173-213 (271)
443 2if2_A Dephospho-COA kinase; a 44.1 8.2 0.00028 35.8 1.7 15 164-178 3-17 (204)
444 2bbw_A Adenylate kinase 4, AK4 44.1 8.7 0.0003 37.1 1.9 17 162-178 27-43 (246)
445 1iy2_A ATP-dependent metallopr 44.1 8.6 0.0003 37.9 1.9 51 124-178 36-89 (278)
446 3bgw_A DNAB-like replicative h 44.0 12 0.00041 39.9 3.1 38 162-205 197-234 (444)
447 2olj_A Amino acid ABC transpor 43.9 9.9 0.00034 37.4 2.3 25 161-187 49-73 (263)
448 2wwf_A Thymidilate kinase, put 43.8 8.6 0.00029 35.8 1.8 18 161-178 9-26 (212)
449 1wv9_A Rhodanese homolog TT165 43.3 17 0.00058 29.0 3.3 35 371-405 54-88 (94)
450 2cvh_A DNA repair and recombin 43.2 9.5 0.00032 35.7 2.0 17 162-178 20-36 (220)
451 3hr8_A Protein RECA; alpha and 43.1 14 0.00046 38.2 3.3 39 162-206 61-99 (356)
452 2z0h_A DTMP kinase, thymidylat 42.7 9.6 0.00033 35.0 1.9 14 165-178 3-16 (197)
453 2qt1_A Nicotinamide riboside k 42.7 9 0.00031 35.7 1.7 17 162-178 21-37 (207)
454 1nn5_A Similar to deoxythymidy 42.6 9.4 0.00032 35.6 1.8 18 161-178 8-25 (215)
455 1e4v_A Adenylate kinase; trans 42.4 9.1 0.00031 36.0 1.7 15 164-178 2-16 (214)
456 2onk_A Molybdate/tungstate ABC 42.4 11 0.00039 36.4 2.4 21 165-187 27-47 (240)
457 4h1g_A Maltose binding protein 42.3 13 0.00046 42.2 3.4 26 154-179 453-480 (715)
458 3pxg_A Negative regulator of g 42.2 13 0.00045 39.9 3.1 17 162-178 201-217 (468)
459 1np6_A Molybdopterin-guanine d 42.1 12 0.00041 34.3 2.4 23 164-187 8-30 (174)
460 3aez_A Pantothenate kinase; tr 42.1 11 0.00038 38.1 2.4 24 164-189 92-115 (312)
461 3auy_A DNA double-strand break 42.0 8.9 0.0003 39.8 1.7 15 165-179 28-42 (371)
462 3umf_A Adenylate kinase; rossm 41.7 10 0.00035 36.1 1.9 17 162-178 29-45 (217)
463 4f4c_A Multidrug resistance pr 41.3 16 0.00055 44.7 4.1 134 161-309 443-610 (1321)
464 2xb4_A Adenylate kinase; ATP-b 41.2 10 0.00035 36.0 1.9 14 165-178 3-16 (223)
465 1xp8_A RECA protein, recombina 41.1 17 0.00057 37.7 3.6 38 162-205 74-111 (366)
466 3f9v_A Minichromosome maintena 41.1 9.8 0.00033 42.3 1.9 15 164-178 329-343 (595)
467 2p5t_B PEZT; postsegregational 40.9 8.6 0.0003 37.4 1.3 16 163-178 33-48 (253)
468 3hix_A ALR3790 protein; rhodan 40.7 24 0.00082 28.9 3.9 37 369-405 51-88 (106)
469 1cr0_A DNA primase/helicase; R 40.7 20 0.00067 35.6 4.0 18 161-178 34-51 (296)
470 3be4_A Adenylate kinase; malar 40.5 10 0.00035 35.8 1.7 17 162-178 5-21 (217)
471 3eme_A Rhodanese-like domain p 40.3 14 0.00047 30.2 2.3 37 369-405 55-91 (103)
472 1g41_A Heat shock protein HSLU 40.2 12 0.0004 39.9 2.3 17 162-178 50-66 (444)
473 1uf9_A TT1252 protein; P-loop, 40.2 10 0.00035 35.0 1.7 15 164-178 10-24 (203)
474 3nzo_A UDP-N-acetylglucosamine 40.2 1.5E+02 0.005 30.6 10.9 92 153-254 26-120 (399)
475 3qks_A DNA double-strand break 40.0 13 0.00045 34.8 2.4 24 164-189 25-48 (203)
476 1sgw_A Putative ABC transporte 40.0 13 0.00045 35.2 2.4 41 269-309 149-189 (214)
477 1odf_A YGR205W, hypothetical 3 39.9 13 0.00043 37.2 2.4 14 165-178 34-47 (290)
478 2p6r_A Afuhel308 helicase; pro 39.7 44 0.0015 37.7 7.2 75 196-277 242-346 (702)
479 2cbz_A Multidrug resistance-as 39.6 12 0.0004 36.1 2.1 25 161-187 30-54 (237)
480 3tlx_A Adenylate kinase 2; str 39.4 11 0.00037 36.4 1.8 17 162-178 29-45 (243)
481 1vht_A Dephospho-COA kinase; s 38.9 12 0.0004 35.2 1.9 15 164-178 6-20 (218)
482 4e22_A Cytidylate kinase; P-lo 38.8 12 0.0004 36.4 1.9 17 162-178 27-43 (252)
483 1z5z_A Helicase of the SNF2/RA 38.6 1.5E+02 0.0051 28.8 10.1 94 170-279 92-191 (271)
484 2zj8_A DNA helicase, putative 38.4 60 0.0021 36.7 8.1 76 196-279 237-345 (720)
485 1rz3_A Hypothetical protein rb 38.1 12 0.0004 34.9 1.7 15 164-178 24-38 (201)
486 2pze_A Cystic fibrosis transme 38.0 13 0.00044 35.6 2.0 25 161-187 33-57 (229)
487 1pzn_A RAD51, DNA repair and r 38.0 14 0.00046 38.1 2.3 24 155-178 119-147 (349)
488 3g5j_A Putative ATP/GTP bindin 37.8 28 0.00097 29.5 4.1 36 371-406 90-126 (134)
489 3gfo_A Cobalt import ATP-bindi 37.8 13 0.00043 36.9 2.0 25 161-187 33-57 (275)
490 3io5_A Recombination and repai 37.5 20 0.00067 36.4 3.3 91 164-284 30-124 (333)
491 2ghi_A Transport protein; mult 37.4 13 0.00046 36.3 2.1 25 161-187 45-69 (260)
492 1g6h_A High-affinity branched- 36.7 14 0.00047 36.1 2.1 25 161-187 32-56 (257)
493 2grj_A Dephospho-COA kinase; T 36.7 14 0.00047 34.4 1.9 15 164-178 14-28 (192)
494 4anj_A Unconventional myosin-V 36.5 24 0.00081 41.8 4.2 66 122-188 95-169 (1052)
495 2jeo_A Uridine-cytidine kinase 36.3 16 0.00054 35.2 2.4 22 164-187 27-48 (245)
496 1ji0_A ABC transporter; ATP bi 36.3 14 0.00049 35.6 2.1 25 161-187 31-55 (240)
497 3mwy_W Chromo domain-containin 36.0 1.9E+02 0.0065 33.0 11.9 104 173-297 555-665 (800)
498 2yyz_A Sugar ABC transporter, 35.9 16 0.00056 37.6 2.5 31 269-299 149-179 (359)
499 2pcj_A ABC transporter, lipopr 35.9 14 0.00046 35.3 1.8 25 161-187 29-53 (224)
500 4g1u_C Hemin import ATP-bindin 35.9 14 0.00049 36.3 2.0 19 161-179 36-54 (266)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=5.7e-60 Score=519.67 Aligned_cols=363 Identities=33% Similarity=0.548 Sum_probs=322.7
Q ss_pred cccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC--CCCCeEE
Q 005773 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAIRV 199 (678)
Q Consensus 122 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~~~v 199 (678)
.+..+|.+++|++.+++++..+||..|||+|.++||.+++|+|++++++||||||++|++|++++++.... ...++++
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~ 132 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV 132 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSE
T ss_pred CCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccE
Confidence 35678999999999999999999999999999999999999999999999999999999999999987543 2346789
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 005773 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (678)
Q Consensus 200 LIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (678)
|||+|||+||.|+++.+.+++...++++.+++|+.....+...+..+++|+|+||++|++++.+. .+.+.++++|||||
T Consensus 133 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-~~~l~~~~~lVlDE 211 (434)
T 2db3_A 133 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT-FITFEDTRFVVLDE 211 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT-SCCCTTCCEEEEET
T ss_pred EEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC-CcccccCCeEEEcc
Confidence 99999999999999999999988899999999999988888888889999999999999998875 46789999999999
Q ss_pred CcccccCChHHHHHHHHHHC--CCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhH
Q 005773 280 ADRLLELGFSAEIHELVRLC--PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357 (678)
Q Consensus 280 ah~ll~~gf~~~i~~i~~~~--~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (678)
||+|+++||...+..++..+ +..+|+++||||+++.+..++..++.++..+.+.........+.+.+..+. ...+
T Consensus 212 ah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~---~~~k 288 (434)
T 2db3_A 212 ADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVN---KYAK 288 (434)
T ss_dssp HHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECC---GGGH
T ss_pred HhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeC---cHHH
Confidence 99999999999999999875 678999999999999999999999999988877655555556666665543 2344
Q ss_pred HHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC
Q 005773 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (678)
Q Consensus 358 ~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~ 437 (678)
...+..++.... .++||||+++..++.++.+|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|
T Consensus 289 ~~~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~ 367 (434)
T 2db3_A 289 RSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIK 367 (434)
T ss_dssp HHHHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcc
Confidence 555555555443 3599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeC-CcHHHHHHHHHHh
Q 005773 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTD-NDRSLLKAIAKRA 489 (678)
Q Consensus 438 ~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~-~d~~~l~~i~~~~ 489 (678)
+|++||+||+|+++..|+||+|||||.|+.|.|++|+++ .+...+..+.+.+
T Consensus 368 ~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l 420 (434)
T 2db3_A 368 NIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKIL 420 (434)
T ss_dssp TCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHH
T ss_pred cCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999995 4666666665543
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.3e-56 Score=489.51 Aligned_cols=368 Identities=31% Similarity=0.525 Sum_probs=330.4
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
..+|.+++|++.+++++..+||..|+|+|.++++.++.|+|+++++|||||||++|++|+++.+... ..++++|||+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~---~~~~~~lil~ 112 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ---VRETQALILA 112 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT---SCSCCEEEEC
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc---cCCceEEEEc
Confidence 4579999999999999999999999999999999999999999999999999999999999876432 2356899999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccc
Q 005773 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (678)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (678)
||++|+.|+++.+..++...++.+..++|+.........+..+++|+|+||++|.+++... .+.+..+++|||||||++
T Consensus 113 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~-~~~~~~~~~vViDEah~~ 191 (410)
T 2j0s_A 113 PTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR-SLRTRAIKMLVLDEADEM 191 (410)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHH
T ss_pred CcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC-CccHhheeEEEEccHHHH
Confidence 9999999999999999988899999999999888877777778999999999999998874 567889999999999999
Q ss_pred ccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHH
Q 005773 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (678)
Q Consensus 284 l~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 363 (678)
++++|...+..++..++...|++++|||+++.+..+...++..|..+...........+.+.+..+.. ...+...+..
T Consensus 192 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~k~~~l~~ 269 (410)
T 2j0s_A 192 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVER--EEWKFDTLCD 269 (410)
T ss_dssp TSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESS--TTHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCc--HHhHHHHHHH
Confidence 99999999999999999999999999999999988888888888887765544455566666665543 2335556666
Q ss_pred HhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEE
Q 005773 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (678)
Q Consensus 364 ~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI 443 (678)
++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 270 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi 349 (410)
T 2j0s_A 270 LYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 349 (410)
T ss_dssp HHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEE
T ss_pred HHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEE
Confidence 66666678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccchhh
Q 005773 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRI 497 (678)
Q Consensus 444 ~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~ 497 (678)
+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.+.+.++..+....
T Consensus 350 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (410)
T 2j0s_A 350 NYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMP 403 (410)
T ss_dssp ESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECC
T ss_pred EECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecc
Confidence 999999999999999999999999999999999999999999998887776543
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.4e-56 Score=488.18 Aligned_cols=365 Identities=36% Similarity=0.555 Sum_probs=317.9
Q ss_pred CcccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC--------
Q 005773 121 SFHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-------- 192 (678)
Q Consensus 121 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~-------- 192 (678)
+.+..+|++++|++.++++|..+||..|+|+|.++||.++.|+|+++++|||||||++|++|+++.+.....
T Consensus 11 p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 90 (417)
T 2i4i_A 11 PPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMK 90 (417)
T ss_dssp CCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccc
Confidence 345678999999999999999999999999999999999999999999999999999999999998875431
Q ss_pred -------CCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccC
Q 005773 193 -------RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSM 265 (678)
Q Consensus 193 -------~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~ 265 (678)
....+++|||+||++|+.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|..++...
T Consensus 91 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~- 169 (417)
T 2i4i_A 91 ENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG- 169 (417)
T ss_dssp HCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT-
T ss_pred cccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC-
Confidence 122467999999999999999999999888899999999999888888888888999999999999988774
Q ss_pred ccCCCCeeEEEEeCCcccccCChHHHHHHHHHH--CCC--CccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCC
Q 005773 266 SVDLDDLAVLILDEADRLLELGFSAEIHELVRL--CPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPST 341 (678)
Q Consensus 266 ~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~--~~~--~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~ 341 (678)
.+.+..+++|||||||++++++|...+..++.. .+. .+|++++|||+++.+..+...++.+|..+...........
T Consensus 170 ~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
T 2i4i_A 170 KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN 249 (417)
T ss_dssp SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSS
T ss_pred CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccC
Confidence 567889999999999999999999999998874 333 6799999999999999999999999887776555555556
Q ss_pred ceeEEEEEechhhhhHHHHHHHHhhcc-CCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC
Q 005773 342 LTEEVVRIRRMREVNQEAVLLSLCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420 (678)
Q Consensus 342 l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~ 420 (678)
+.+.++.+. ...+...+..++... .++++||||+++..++.++.+|...++.+..+||++++.+|..+++.|++|+
T Consensus 250 i~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (417)
T 2i4i_A 250 ITQKVVWVE---ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 326 (417)
T ss_dssp EEEEEEECC---GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred ceEEEEEec---cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC
Confidence 666655543 234455555555544 5678999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHh
Q 005773 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (678)
Q Consensus 421 ~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~ 489 (678)
.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.+.+.+
T Consensus 327 ~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~ 395 (417)
T 2i4i_A 327 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLL 395 (417)
T ss_dssp SCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHH
T ss_pred CCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988888777654
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.8e-55 Score=477.24 Aligned_cols=367 Identities=31% Similarity=0.518 Sum_probs=316.4
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
..+|.++++++.+++.+..+||..|+++|.++++.++.|+++++++|||||||++|++|+++.+.... .+.++||++
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~---~~~~~lil~ 115 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL---KATQALVLA 115 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS---CSCCEEEEC
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC---CceeEEEEe
Confidence 46799999999999999999999999999999999999999999999999999999999998875432 356799999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhc-CCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc
Q 005773 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (678)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (678)
||++|+.|+++.+..++...+..+..++|+.........+. ..++|+|+||++|.+++... .+.+..+++|||||||+
T Consensus 116 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~~~~vViDEah~ 194 (414)
T 3eiq_A 116 PTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR-YLSPKYIKMFVLDEADE 194 (414)
T ss_dssp SSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT-SSCSTTCCEEEECSHHH
T ss_pred ChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcccccCcEEEEECHHH
Confidence 99999999999999999888999999999988777766665 67899999999999998774 46688899999999999
Q ss_pred cccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHH
Q 005773 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (678)
Q Consensus 283 ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 362 (678)
+++++|...+..++..+++..|++++|||+++.+..+...++.+|..+...........+.+.+..... ...+...+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ 272 (414)
T 3eiq_A 195 MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVER--EEWKLDTLC 272 (414)
T ss_dssp HHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSS--STTHHHHHH
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeCh--HHhHHHHHH
Confidence 999999999999999999999999999999999999999999999888776665566666666655432 334566677
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEE
Q 005773 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (678)
Q Consensus 363 ~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (678)
.++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++|
T Consensus 273 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~V 352 (414)
T 3eiq_A 273 DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352 (414)
T ss_dssp HHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCE
T ss_pred HHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEE
Confidence 77777777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccchh
Q 005773 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 496 (678)
Q Consensus 443 I~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~ 496 (678)
|+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.+.+.++..+...
T Consensus 353 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (414)
T 3eiq_A 353 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEM 406 (414)
T ss_dssp EESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEEC
T ss_pred EEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCcccc
Confidence 999999999999999999999999999999999999999999999888776654
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.5e-54 Score=468.55 Aligned_cols=366 Identities=33% Similarity=0.532 Sum_probs=323.4
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEE
Q 005773 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl 202 (678)
...+|++++|++.++++|..+||..|+|+|.++++.++.|+++++++|||||||++|++|++..+... ..++++||+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~---~~~~~~lil 95 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK---LNKIQALIM 95 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT---SCSCCEEEE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc---cCCccEEEE
Confidence 35689999999999999999999999999999999999999999999999999999999999887543 235579999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc
Q 005773 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (678)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (678)
+||++|+.|+++.+..++...++.+..++|+.........+...++|+|+||++|..++... ...+.++++|||||||+
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH~ 174 (400)
T 1s2m_A 96 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK-VADLSDCSLFIMDEADK 174 (400)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEEESHHH
T ss_pred cCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC-CcccccCCEEEEeCchH
Confidence 99999999999999999888899999999998887777777788999999999999988764 45688999999999999
Q ss_pred cccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHH
Q 005773 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (678)
Q Consensus 283 ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 362 (678)
+.+.+|...+..++..++...|++++|||++..+...+...+..|..+...... ....+.+.+.... ...+...+.
T Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~k~~~l~ 250 (400)
T 1s2m_A 175 MLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEEL-TLKGITQYYAFVE---ERQKLHCLN 250 (400)
T ss_dssp HSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSC-BCTTEEEEEEECC---GGGHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecccc-ccCCceeEEEEec---hhhHHHHHH
Confidence 998889999999999999999999999999999999998888888776654332 2334444443332 334555566
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEE
Q 005773 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (678)
Q Consensus 363 ~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (678)
.++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 251 ~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~V 330 (400)
T 1s2m_A 251 TLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVV 330 (400)
T ss_dssp HHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEE
T ss_pred HHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEE
Confidence 66666677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccchh
Q 005773 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSR 496 (678)
Q Consensus 443 I~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~ 496 (678)
|+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.|.+..+..+...
T Consensus 331 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~ 384 (400)
T 1s2m_A 331 INFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAI 384 (400)
T ss_dssp EESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEEC
T ss_pred EEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccc
Confidence 999999999999999999999999999999999999999999999988777643
No 6
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.1e-53 Score=465.97 Aligned_cols=367 Identities=29% Similarity=0.466 Sum_probs=319.3
Q ss_pred cccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEE
Q 005773 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRV 199 (678)
Q Consensus 122 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g--~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~v 199 (678)
....+|+++++++.+++++..+||..|+|+|.++++.++.+ +++++++|||||||++|++|+++.+.... .++++
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~---~~~~~ 98 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---KYPQC 98 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS---CSCCE
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC---CCCCE
Confidence 34678999999999999999999999999999999999997 99999999999999999999998875432 35579
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhc-CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEe
Q 005773 200 LILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (678)
Q Consensus 200 LIl~Ptr~La~Q~~~~~~~l~~~-~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvD 278 (678)
|||+||++|+.|+++.+..+... .++.+....++...... ....++|+|+||++|..++.+...+.+.++++||||
T Consensus 99 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViD 175 (412)
T 3fht_A 99 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 175 (412)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEe
Confidence 99999999999999999998876 46778877777654322 245679999999999999977556778899999999
Q ss_pred CCccccc-CChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhH
Q 005773 279 EADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ 357 (678)
Q Consensus 279 Eah~ll~-~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 357 (678)
|||++++ +++...+..+...++...|++++|||+++.+..+....+..|..+...........+.+.++... ....+
T Consensus 176 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 253 (412)
T 3fht_A 176 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCS--SRDEK 253 (412)
T ss_dssp THHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECS--SHHHH
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcC--ChHHH
Confidence 9999986 78999999999999999999999999999999999999999888877655555556666555443 23345
Q ss_pred HHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC
Q 005773 358 EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDII 437 (678)
Q Consensus 358 ~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~ 437 (678)
...+..++....++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 254 ~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 333 (412)
T 3fht_A 254 FQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 333 (412)
T ss_dssp HHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCcc
Confidence 55666666666778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCC------ChhHHHHHHhhcccCCCceEEEEEeeCCc-HHHHHHHHHHhcCccchh
Q 005773 438 GVQTVINYACPR------DLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIAKRAGSKLKSR 496 (678)
Q Consensus 438 ~v~~VI~~d~p~------s~~~yiQr~GRagR~g~~G~~i~l~~~~d-~~~l~~i~~~~~~~~~~~ 496 (678)
++++||+|++|+ +...|+||+||+||.|+.|.|++|+++.+ ...++.+.+..+..+...
T Consensus 334 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 399 (412)
T 3fht_A 334 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 399 (412)
T ss_dssp TEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC
T ss_pred CCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccC
Confidence 999999999995 56899999999999999999999998765 788889998887766653
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.5e-53 Score=458.99 Aligned_cols=364 Identities=32% Similarity=0.563 Sum_probs=316.7
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcC
Q 005773 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (678)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~P 204 (678)
.+|++++|++.++++|..+||..|+|+|.++++.++.|+++++.+|||+|||++|++|++..+.... .++++||++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~---~~~~~lil~P 84 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT---GQVSVLVMCH 84 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT---TCCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC---CCeeEEEECC
Confidence 5799999999999999999999999999999999999999999999999999999999998874432 3457999999
Q ss_pred cHHHHHHHHHHHHHHhhcC-CceeEEEecCCChHHHHHHhc-CCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc
Q 005773 205 TRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (678)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~-~~~v~~~~g~~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (678)
|++|+.|+++.+..+.... ++++..++|+.........+. ..++|+|+||++|..++... ...+.++++|||||||+
T Consensus 85 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~vViDEaH~ 163 (391)
T 1xti_A 85 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDECDK 163 (391)
T ss_dssp CHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT-SSCCTTCSEEEECSHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC-CccccccCEEEEeCHHH
Confidence 9999999999999988765 789999999988776665554 45799999999999988764 46688999999999999
Q ss_pred cccC-ChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCC-CCCCceeEEEEEechhhhhHHHH
Q 005773 283 LLEL-GFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAK-RPSTLTEEVVRIRRMREVNQEAV 360 (678)
Q Consensus 283 ll~~-gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~ 360 (678)
+.++ ++...+..++...+...|++++|||+++.+...+..++..|..+....... ....+.+.+.... ...+...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 240 (391)
T 1xti_A 164 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLK---DNEKNRK 240 (391)
T ss_dssp HTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECC---GGGHHHH
T ss_pred HhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcC---chhHHHH
Confidence 9884 788888999999999999999999999999999999999988776654332 2234444444432 3345556
Q ss_pred HHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcc
Q 005773 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 440 (678)
Q Consensus 361 l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~ 440 (678)
+..++....++++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 241 l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~ 320 (391)
T 1xti_A 241 LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 320 (391)
T ss_dssp HHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE
T ss_pred HHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC
Confidence 66666666778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCC-cHHHHHHHHHHhcCccch
Q 005773 441 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKLKS 495 (678)
Q Consensus 441 ~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~-d~~~l~~i~~~~~~~~~~ 495 (678)
+||+|++|+++..|+||+||+||.|+.|.|++|+++. +..+++.+.+.++..+..
T Consensus 321 ~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (391)
T 1xti_A 321 IAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISE 376 (391)
T ss_dssp EEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEE
T ss_pred EEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhh
Confidence 9999999999999999999999999999999999876 557788888887776654
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=5.3e-54 Score=489.41 Aligned_cols=364 Identities=29% Similarity=0.485 Sum_probs=304.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCCEEEEcCCCchhhhhhhhchhHHHhcCCC-CCCCeEEEEEcCcHHH
Q 005773 132 LSRPLLRACEALGYSKPTPIQAACIPLAL--TGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLILTPTREL 208 (678)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll--~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~vLIl~Ptr~L 208 (678)
|++.+++++..+||..|+|+|.++|+.++ .|+|+++++|||||||++|++|+++.+..... ...++++|||+||++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 99999999999999999999999999999 78899999999999999999999999876542 2335689999999999
Q ss_pred HHHHHHHHHHHhhc----CCceeEEEecCCChHHHHHHhc-CCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccc
Q 005773 209 AVQVHSMIEKIAQF----TDIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (678)
Q Consensus 209 a~Q~~~~~~~l~~~----~~~~v~~~~g~~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (678)
|.|+++.+..+... ..+.+..++|+.........+. .+++|+|+||++|++++.......+..+++|||||||++
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 187 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 187 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHh
Confidence 99999999998643 4567888889888777666553 478999999999999987653456788999999999999
Q ss_pred ccCChHHHHHHHHHHCC-------CCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCC----CCCCCceeEEEEEech
Q 005773 284 LELGFSAEIHELVRLCP-------KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA----KRPSTLTEEVVRIRRM 352 (678)
Q Consensus 284 l~~gf~~~i~~i~~~~~-------~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~----~~~~~l~~~~~~~~~~ 352 (678)
++|||...+..++..++ ..+|+++||||+++.+..++..++..|..+.+.... .....+.+.++.....
T Consensus 188 ~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 267 (579)
T 3sqw_A 188 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267 (579)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecch
Confidence 99999999888876653 367999999999999999998888887665543211 1222344444433321
Q ss_pred hhh--hHHHHHHHHh-hccCCceEEEEeccHHHHHHHHHHHhhc---CCceeeccCCCCHHHHHHHHHHHhcCCccEEEE
Q 005773 353 REV--NQEAVLLSLC-SKTFTSKVIIFSGTKQAAHRLKILFGLA---ALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426 (678)
Q Consensus 353 ~~~--~~~~~l~~~~-~~~~~~~vLVF~~s~~~~~~l~~~L~~~---~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLva 426 (678)
... .....+...+ ....+.++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.|++|+.+||||
T Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVa 347 (579)
T 3sqw_A 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 347 (579)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEE
Confidence 111 1111222222 2355689999999999999999999877 899999999999999999999999999999999
Q ss_pred cccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccch
Q 005773 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (678)
Q Consensus 427 T~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~ 495 (678)
|+++++|||+|+|++||+|++|.++..|+||+|||||.|+.|.|++|+++.+..+++.|.+..+..+..
T Consensus 348 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 416 (579)
T 3sqw_A 348 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 416 (579)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred cchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999887766553
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=5.8e-53 Score=457.21 Aligned_cols=361 Identities=33% Similarity=0.513 Sum_probs=313.5
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEE
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g--~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLI 201 (678)
..+|++++|++.+++++..+||..|+|+|.++++.++.+ +++++++|||||||++|++|++..+.... .++++||
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~---~~~~~li 80 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED---ASPQAIC 80 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC---CSCCEEE
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC---CCccEEE
Confidence 468999999999999999999999999999999999998 89999999999999999999998875432 3567999
Q ss_pred EcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCc
Q 005773 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (678)
Q Consensus 202 l~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah 281 (678)
|+||++|+.|+++.+.+++...++.+...+++..... ...+++|+|+||++|...+... ...+.++++|||||||
T Consensus 81 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIiDEah 155 (395)
T 3pey_A 81 LAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRK-LMQLQKIKIFVLDEAD 155 (395)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTT-CBCCTTCCEEEEETHH
T ss_pred ECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcC-CcccccCCEEEEEChh
Confidence 9999999999999999999888888888887654322 1336899999999999988764 5668899999999999
Q ss_pred cccc-CChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHH
Q 005773 282 RLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV 360 (678)
Q Consensus 282 ~ll~-~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 360 (678)
++.+ +++...+..+...++...|++++|||+++.+..+....+..+..+...........+.+.+.... ....+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 233 (395)
T 3pey_A 156 NMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCK--NEADKFDV 233 (395)
T ss_dssp HHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECS--SHHHHHHH
T ss_pred hhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcC--chHHHHHH
Confidence 9987 78999999999999999999999999999999999999888877766554444455555544432 23445556
Q ss_pred HHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcc
Q 005773 361 LLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQ 440 (678)
Q Consensus 361 l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~ 440 (678)
+..++....++++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 234 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 313 (395)
T 3pey_A 234 LTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVS 313 (395)
T ss_dssp HHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEE
T ss_pred HHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCC
Confidence 66666666778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC------ChhHHHHHHhhcccCCCceEEEEEeeCC-cHHHHHHHHHHhc-Cccc
Q 005773 441 TVINYACPR------DLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAG-SKLK 494 (678)
Q Consensus 441 ~VI~~d~p~------s~~~yiQr~GRagR~g~~G~~i~l~~~~-d~~~l~~i~~~~~-~~~~ 494 (678)
+||+|++|+ ++..|+||+||+||.|+.|.|++|+++. +..+++.+.+..+ ..+.
T Consensus 314 ~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 375 (395)
T 3pey_A 314 MVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMT 375 (395)
T ss_dssp EEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCE
T ss_pred EEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceee
Confidence 999999999 9999999999999999999999999875 4667777877766 4433
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.1e-53 Score=483.47 Aligned_cols=364 Identities=29% Similarity=0.485 Sum_probs=302.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCCEEEEcCCCchhhhhhhhchhHHHhcCCC-CCCCeEEEEEcCcHHH
Q 005773 132 LSRPLLRACEALGYSKPTPIQAACIPLAL--TGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLILTPTREL 208 (678)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll--~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~vLIl~Ptr~L 208 (678)
|++.+++++..+||..|+|+|.++|+.++ .++|+++++|||||||++|++|+++.+..... ...++++|||+||++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 67899999999999999999999999876542 2235689999999999
Q ss_pred HHHHHHHHHHHhhc----CCceeEEEecCCChHHHHHHh-cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccc
Q 005773 209 AVQVHSMIEKIAQF----TDIRCCLVVGGLSTKMQETAL-RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (678)
Q Consensus 209 a~Q~~~~~~~l~~~----~~~~v~~~~g~~~~~~~~~~l-~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (678)
|.|+++.+..+... ..+.+..++|+.........+ ..+++|+|+||++|.+++.......+..+++|||||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999999997643 356678888888877666555 4578999999999999987653446788999999999999
Q ss_pred ccCChHHHHHHHHHHCC-------CCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCC----CCCCCceeEEEEEech
Q 005773 284 LELGFSAEIHELVRLCP-------KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSA----KRPSTLTEEVVRIRRM 352 (678)
Q Consensus 284 l~~gf~~~i~~i~~~~~-------~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~----~~~~~l~~~~~~~~~~ 352 (678)
+++||...+..++..++ ..+|+++||||+++.+..++..++..+..+...... .....+.+.+......
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 99999998888876653 367999999999999999998888887665543221 1222334444433321
Q ss_pred hhhh--HHHHHHHHh-hccCCceEEEEeccHHHHHHHHHHHhhc---CCceeeccCCCCHHHHHHHHHHHhcCCccEEEE
Q 005773 353 REVN--QEAVLLSLC-SKTFTSKVIIFSGTKQAAHRLKILFGLA---ALKAAELHGNLTQAQRLEALELFRKQHVDFLIA 426 (678)
Q Consensus 353 ~~~~--~~~~l~~~~-~~~~~~~vLVF~~s~~~~~~l~~~L~~~---~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLva 426 (678)
.... ....+...+ ....+.++||||+|+..++.++.+|... ++.+..+||+|++.+|..+++.|++|+.+||||
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 1111 111122222 2355789999999999999999999876 899999999999999999999999999999999
Q ss_pred cccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccch
Q 005773 427 TDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (678)
Q Consensus 427 T~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~ 495 (678)
|+++++|||+|+|++||+|++|.++..|+||+|||||.|+.|.|++|+++.+..+++.+.+..+..+..
T Consensus 399 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 467 (563)
T 3i5x_A 399 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 467 (563)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred cchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999887766553
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.9e-55 Score=490.41 Aligned_cols=365 Identities=29% Similarity=0.466 Sum_probs=179.9
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEE
Q 005773 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g--~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vL 200 (678)
...+|.+++|++.++++|..+||..|+|+|.+++|.++.+ ++++++||||||||++|++|+++.+.... ..+++|
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~---~~~~~l 166 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---KYPQCL 166 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS---CSCCEE
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC---CCCcEE
Confidence 4568999999999999999999999999999999999997 89999999999999999999998875432 345799
Q ss_pred EEcCcHHHHHHHHHHHHHHhhc-CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 005773 201 ILTPTRELAVQVHSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (678)
Q Consensus 201 Il~Ptr~La~Q~~~~~~~l~~~-~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (678)
||+||++|+.|+++.+..+..+ .++.+.+..++...... ....++|+|+||++|++++.+...+.+.++++|||||
T Consensus 167 il~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDE 243 (479)
T 3fmp_B 167 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (479)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECC
T ss_pred EEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEEC
Confidence 9999999999999999999876 46777777776554322 2345799999999999999876667789999999999
Q ss_pred Cccccc-CChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHH
Q 005773 280 ADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358 (678)
Q Consensus 280 ah~ll~-~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (678)
||++++ ++|...+..+...++..+|++++|||++..+..+...++..|..+...........+.+.++.+.. ...+.
T Consensus 244 ah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~ 321 (479)
T 3fmp_B 244 ADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS--RDEKF 321 (479)
T ss_dssp HHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-------------------------
T ss_pred HHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCC--HHHHH
Confidence 999986 789999999999999999999999999999999999999998888776555555555555444332 23444
Q ss_pred HHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCC
Q 005773 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438 (678)
Q Consensus 359 ~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~ 438 (678)
..+..++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|+
T Consensus 322 ~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~ 401 (479)
T 3fmp_B 322 QALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCcccc
Confidence 55566666666789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCC------ChhHHHHHHhhcccCCCceEEEEEeeCCc-HHHHHHHHHHhcCccch
Q 005773 439 VQTVINYACPR------DLTSYVHRVGRTARAGREGYAVTFVTDND-RSLLKAIAKRAGSKLKS 495 (678)
Q Consensus 439 v~~VI~~d~p~------s~~~yiQr~GRagR~g~~G~~i~l~~~~d-~~~l~~i~~~~~~~~~~ 495 (678)
|++||+||+|+ +...|+||+|||||.|+.|.|++|+++.+ ..+++.|.+.++..+..
T Consensus 402 v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~ 465 (479)
T 3fmp_B 402 VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIER 465 (479)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceE
Confidence 99999999995 56899999999999999999999998765 77777787766555443
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4e-52 Score=446.08 Aligned_cols=358 Identities=35% Similarity=0.576 Sum_probs=314.7
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEE
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g-~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl 202 (678)
..+|++++|++.++++|..+||..|+|+|.++++.++++ +++++.+|||||||++|++|++..+... ++.++||+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~----~~~~~lil 80 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN----NGIEAIIL 80 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS----SSCCEEEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc----CCCcEEEE
Confidence 357999999999999999999999999999999999998 6999999999999999999999876432 35679999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc
Q 005773 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (678)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (678)
+||++|+.|+++.+..+....++.+..++|+.........+. .++|+|+||++|...+... ...+.++++|||||||+
T Consensus 81 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~-~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 81 TPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRG-TLNLKNVKYFILDEADE 158 (367)
T ss_dssp CSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTT-CSCTTSCCEEEEETHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcC-CcccccCCEEEEeCchH
Confidence 999999999999999998888889999999988766655554 6899999999999988764 46688999999999999
Q ss_pred cccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHH
Q 005773 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (678)
Q Consensus 283 ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 362 (678)
+.+++|...+..++..+++..+++++|||+++.+......++..+..+.... ...+.+.++... ...+...+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~l~ 231 (367)
T 1hv8_A 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVN---ENERFEALC 231 (367)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECC---GGGHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeC---hHHHHHHHH
Confidence 9999999999999999999999999999999999888888887766554422 224444444432 234444555
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEE
Q 005773 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (678)
Q Consensus 363 ~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (678)
.++. ..+.++||||+++..++.++..|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 232 ~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 232 RLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310 (367)
T ss_dssp HHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEE
T ss_pred HHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEE
Confidence 5554 456789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccch
Q 005773 443 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (678)
Q Consensus 443 I~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~ 495 (678)
|+|++|+++..|+||+||+||.|++|.+++++++.+...++.|.+..+.++..
T Consensus 311 i~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 363 (367)
T 1hv8_A 311 INYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKK 363 (367)
T ss_dssp EESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCC
T ss_pred EEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCce
Confidence 99999999999999999999999999999999999999999999988877664
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.1e-54 Score=467.54 Aligned_cols=364 Identities=30% Similarity=0.516 Sum_probs=185.0
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
..+|++++|++.+++++..+||..|+|+|.++++.++.|+++++++|||+|||++|++|+++.+... ..++++||++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~---~~~~~~lil~ 96 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---VKAPQALMLA 96 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT---CCSCCEEEEC
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc---CCCCCEEEEc
Confidence 4579999999999999999999999999999999999999999999999999999999999887543 2356899999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccc
Q 005773 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (678)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (678)
||++|+.|+++.+..+....++.+..++|+.........+. .++|+|+||++|...+... .+.+.++++|||||||++
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~-~~~~~~~~~vIiDEah~~ 174 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEM 174 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhC-CcchhhCcEEEEEChHHh
Confidence 99999999999999998888999999999988766555444 5799999999999988764 466789999999999999
Q ss_pred ccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHH
Q 005773 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (678)
Q Consensus 284 l~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 363 (678)
.+++|...+..++..++...|++++|||+++.+..+...++..|..+...........+.+.+..+.. ...+...+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 252 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEE--EEYKYECLTD 252 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCc--hhhHHHHHHH
Confidence 99999999999999999999999999999999999998899988887765544444444444443322 1223344455
Q ss_pred HhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEE
Q 005773 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI 443 (678)
Q Consensus 364 ~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI 443 (678)
++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 253 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi 332 (394)
T 1fuu_A 253 LYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 332 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEE
Confidence 55555668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccc
Q 005773 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (678)
Q Consensus 444 ~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~ 494 (678)
+|++|+++..|+||+||+||.|++|.|++|+++.+...++.+.+..+..+.
T Consensus 333 ~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 383 (394)
T 1fuu_A 333 NYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIE 383 (394)
T ss_dssp ---------------------------------------------------
T ss_pred EeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCccc
Confidence 999999999999999999999999999999999998888888876665554
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.4e-50 Score=428.96 Aligned_cols=334 Identities=38% Similarity=0.602 Sum_probs=288.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 005773 132 LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (678)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q 211 (678)
|++.+.+++..+||..|+|+|.++++.+++|+++++.+|||+|||++|++|+++. +.++||++||++|+.|
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------~~~~liv~P~~~L~~q 71 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------GMKSLVVTPTRELTRQ 71 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------TCCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------cCCEEEEeCCHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999864 3468999999999999
Q ss_pred HHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHH
Q 005773 212 VHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE 291 (678)
Q Consensus 212 ~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~ 291 (678)
+++.+.+++...++.+..++|+.........+.. ++|+|+||++|...+... .+.+.++++|||||||++.+++|...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDEah~~~~~~~~~~ 149 (337)
T 2z0m_A 72 VASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKG-VIDLSSFEIVIIDEADLMFEMGFIDD 149 (337)
T ss_dssp HHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTT-SCCGGGCSEEEEESHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcC-CcchhhCcEEEEEChHHhhccccHHH
Confidence 9999999988888999999999887766655544 899999999999988764 45678899999999999999999999
Q ss_pred HHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCCc
Q 005773 292 IHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTS 371 (678)
Q Consensus 292 i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 371 (678)
+..++...+...+++++|||+++.+...+..++.++..+... .....+.+.++.+... .. .....+....++
T Consensus 150 ~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~ 221 (337)
T 2z0m_A 150 IKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDD---WR--SKVQALRENKDK 221 (337)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSS---SH--HHHHHHHTCCCS
T ss_pred HHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChH---HH--HHHHHHHhCCCC
Confidence 999999999999999999999999999988888887666432 1223344444443221 11 122344456678
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCCh
Q 005773 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDL 451 (678)
Q Consensus 372 ~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~ 451 (678)
++||||+++..++.++..|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|+++
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 99999999999999998886 68899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHh
Q 005773 452 TSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (678)
Q Consensus 452 ~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~ 489 (678)
..|+||+||+||.|++|.|++|+. .+...++.+.+.+
T Consensus 298 ~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 298 RTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp HHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred HHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 999999999999999999999999 8888888876654
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.5e-50 Score=455.24 Aligned_cols=342 Identities=16% Similarity=0.232 Sum_probs=278.2
Q ss_pred ccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcH
Q 005773 128 MELNLSRPLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (678)
Q Consensus 128 ~~l~l~~~l~~~l~~-~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr 206 (678)
.++++++.+...|+. +||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.. .+++|||+|++
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~---------~g~~lVisP~~ 94 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS---------DGFTLVICPLI 94 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS---------SSEEEEECSCH
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc---------CCcEEEEeCHH
Confidence 457899999999998 79999999999999999999999999999999999999999842 45899999999
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHH------hcCCCCEEEECchHHH------HHHhccCccCCCCeeE
Q 005773 207 ELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA------LRSMPDIVVATPGRMI------DHLRNSMSVDLDDLAV 274 (678)
Q Consensus 207 ~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~------l~~~~dIiv~Tp~~L~------~~l~~~~~~~l~~i~~ 274 (678)
+|+.|+++.+..+ ++.+..++|+......... ....++|+|+||++|. +.+.. ...+..+.+
T Consensus 95 ~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~~i~~ 168 (591)
T 2v1x_A 95 SLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEARRFTR 168 (591)
T ss_dssp HHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTTCEEE
T ss_pred HHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhccCCcE
Confidence 9999999998876 7888889988876654332 2457899999999874 33332 345778999
Q ss_pred EEEeCCcccccCC--hHHHHHH--HHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEe
Q 005773 275 LILDEADRLLELG--FSAEIHE--LVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR 350 (678)
Q Consensus 275 lVvDEah~ll~~g--f~~~i~~--i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~ 350 (678)
|||||||++++|| |...+.. ++....+..|+|+||||+++.+...+...+..+....+.....++ .+...+.. .
T Consensus 169 iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~-nl~~~v~~-~ 246 (591)
T 2v1x_A 169 IAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRP-NLYYEVRQ-K 246 (591)
T ss_dssp EEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCT-TEEEEEEE-C
T ss_pred EEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCc-ccEEEEEe-C
Confidence 9999999999999 6555443 333334578999999999999888877776655433333333333 33222221 1
Q ss_pred chhhhhHHHHHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 005773 351 RMREVNQEAVLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429 (678)
Q Consensus 351 ~~~~~~~~~~l~~~~~-~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~ 429 (678)
..........+..++. ...+.++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||++
T Consensus 247 ~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a 326 (591)
T 2v1x_A 247 PSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA 326 (591)
T ss_dssp CSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT
T ss_pred CCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech
Confidence 1112223334444443 335789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHH
Q 005773 430 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIA 486 (678)
Q Consensus 430 ~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~ 486 (678)
+++|||+|+|++||+|++|.++..|+||+||+||.|++|.|++|+++.|...+..+.
T Consensus 327 ~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 327 FGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp SCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred hhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877766654
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=7.1e-49 Score=439.97 Aligned_cols=341 Identities=20% Similarity=0.276 Sum_probs=276.6
Q ss_pred CCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 125 NSFMELNLSRPLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~-~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
.+|++++|++.+.+.|+. +||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.. .+++|||+
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------~g~~lvi~ 72 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------NGLTVVVS 72 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---------SSEEEEEC
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---------CCCEEEEC
Confidence 468899999999999998 89999999999999999999999999999999999999999842 35789999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHH----HHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 005773 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE----TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (678)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~----~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (678)
|+++|+.|+++.+..+ ++.+..++++.+..... ....+.++|+|+||++|....... .+...++.+|||||
T Consensus 73 P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~-~l~~~~~~~vViDE 147 (523)
T 1oyw_A 73 PLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE-HLAHWNPVLLAVDE 147 (523)
T ss_dssp SCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH-HHTTSCEEEEEESS
T ss_pred ChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHH-HHhhCCCCEEEEeC
Confidence 9999999999888874 77888888887655432 223456899999999995321111 23346899999999
Q ss_pred CcccccCC--hHHHHH---HHHHHCCCCccEEEEEeccChhHHHHHHHh--cCCCeEEecCCCCCCCCCceeEEEEEech
Q 005773 280 ADRLLELG--FSAEIH---ELVRLCPKRRQTMLFSATLTEDVDELIKLS--LTKPLRLSADPSAKRPSTLTEEVVRIRRM 352 (678)
Q Consensus 280 ah~ll~~g--f~~~i~---~i~~~~~~~~q~il~SATl~~~~~~l~~~~--~~~p~~~~~~~~~~~~~~l~~~~~~~~~~ 352 (678)
||++++|| |...+. .+...+| ..+++++|||+++.+...+... +..|..+.. ...++ .+...+..
T Consensus 148 aH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~~r~-~l~~~v~~---- 219 (523)
T 1oyw_A 148 AHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQIS--SFDRP-NIRYMLME---- 219 (523)
T ss_dssp GGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC--CCCCT-TEEEEEEE----
T ss_pred ccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC--CCCCC-ceEEEEEe----
Confidence 99999998 544443 3455554 5889999999998876644433 344544332 22222 33222211
Q ss_pred hhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccc
Q 005773 353 REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAAR 432 (678)
Q Consensus 353 ~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~ 432 (678)
...+...+..++....+.++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++
T Consensus 220 -~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 220 -KFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp -CSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred -CCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 1233444555566566789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHH
Q 005773 433 GLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKR 488 (678)
Q Consensus 433 GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~ 488 (678)
|||+|+|++||+|++|+|+..|+||+||+||.|.+|.|++|+++.|...++.+...
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHT
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999888877776553
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.8e-49 Score=430.48 Aligned_cols=340 Identities=18% Similarity=0.238 Sum_probs=267.9
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHH
Q 005773 135 PLLRACEA-LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVH 213 (678)
Q Consensus 135 ~l~~~l~~-~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~ 213 (678)
.+.+.++. +|| .|+|+|.++++.++.|+|+++++|||||||++|++|++..+ ..++++|||+||++|+.|++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~------~~~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------RKGKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH------TTTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh------cCCCEEEEEECCHHHHHHHH
Confidence 34445544 566 69999999999999999999999999999999999988776 23567999999999999999
Q ss_pred HHHHHHhhcCCceeEEEecCCCh---HHHHHHhcCC-CCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccccc----
Q 005773 214 SMIEKIAQFTDIRCCLVVGGLST---KMQETALRSM-PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE---- 285 (678)
Q Consensus 214 ~~~~~l~~~~~~~v~~~~g~~~~---~~~~~~l~~~-~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~---- 285 (678)
+.+..++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++..
T Consensus 82 ~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 82 ERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccch
Confidence 99999887 78999999999887 4445555544 99999999999988764 5577999999999987654
Q ss_pred -------CChHHH-HHHHHHHCC-----------CCccEEEEEec-cChhHH-HHHHHhcCCCeEEecCCCCCCCCCcee
Q 005773 286 -------LGFSAE-IHELVRLCP-----------KRRQTMLFSAT-LTEDVD-ELIKLSLTKPLRLSADPSAKRPSTLTE 344 (678)
Q Consensus 286 -------~gf~~~-i~~i~~~~~-----------~~~q~il~SAT-l~~~~~-~l~~~~~~~p~~~~~~~~~~~~~~l~~ 344 (678)
+||... +..++..++ ..+|++++||| ++..+. .+....+. +...........+.+
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~ 233 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITH 233 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchh
Confidence 677777 777888776 78999999999 454443 22222222 122222223344554
Q ss_pred EEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCcee-eccCCCCHHHHHHHHHHHhcCCccE
Q 005773 345 EVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA-ELHGNLTQAQRLEALELFRKQHVDF 423 (678)
Q Consensus 345 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~-~lhg~l~~~~R~~~l~~F~~g~~~v 423 (678)
.+... .+...+..++.. .++++||||+++..++.++..|...++.+. .+||. +|. ++.|++|+.+|
T Consensus 234 ~~~~~------~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~v 300 (414)
T 3oiy_A 234 VRISS------RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINI 300 (414)
T ss_dssp EEESS------CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSE
T ss_pred eeecc------CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeE
Confidence 44332 233344444444 358999999999999999999999999998 99994 444 99999999999
Q ss_pred EEE----cccccccCCCCC-ccEEEEcCCC--CChhHHHHHHhhcccCC----CceEEEEEeeCCcHHHHHHHHHHhc--
Q 005773 424 LIA----TDVAARGLDIIG-VQTVINYACP--RDLTSYVHRVGRTARAG----REGYAVTFVTDNDRSLLKAIAKRAG-- 490 (678)
Q Consensus 424 Lva----T~~~~~GlDi~~-v~~VI~~d~p--~s~~~yiQr~GRagR~g----~~G~~i~l~~~~d~~~l~~i~~~~~-- 490 (678)
||| |+++++|+|+|+ |++||+|++| .++..|+||+||+||.| +.|.|++|+ .+...++.+.+.++
T Consensus 301 Lvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~ 378 (414)
T 3oiy_A 301 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLI 378 (414)
T ss_dssp EEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHH
T ss_pred EEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhccc
Confidence 999 999999999999 9999999999 99999999999999987 589999999 77888888888776
Q ss_pred CccchhhhhhhhHH
Q 005773 491 SKLKSRIVAEQSIT 504 (678)
Q Consensus 491 ~~~~~~~~~~~~~~ 504 (678)
..+....++...+.
T Consensus 379 ~~~~~~~~~~~~~~ 392 (414)
T 3oiy_A 379 AEEEIIEEAEANWK 392 (414)
T ss_dssp HCCCEEEGGGCCHH
T ss_pred ccccccccccccHH
Confidence 55554444444333
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-49 Score=444.29 Aligned_cols=360 Identities=28% Similarity=0.447 Sum_probs=262.5
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g--~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
.|...++++.+++.+...||..|+++|.++++.++.| +++++++|||||||++|++|+++.+.... .++++|||+
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~---~~~~vLvl~ 196 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV---PKPQAICLA 196 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC---CSCCEEEEC
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC---CCceEEEEE
Confidence 4566688999999999999999999999999999998 99999999999999999999999875432 356899999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccc
Q 005773 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (678)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (678)
|+++|+.|+++.+..+....++.+....++..... ....++|+|+||++|...+... .+.+.++++|||||||++
T Consensus 197 P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~-~~~~~~~~lIIiDEaH~~ 271 (508)
T 3fho_A 197 PSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRR-QLDARDIKVFVLDEADNM 271 (508)
T ss_dssp SCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEECCHHHH
T ss_pred CcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcC-CccccCCCEEEEechhhh
Confidence 99999999999999988777666665555433221 2346899999999999988764 566889999999999999
Q ss_pred cc-CChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHH
Q 005773 284 LE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (678)
Q Consensus 284 l~-~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 362 (678)
.+ +++...+..+...++...|++++|||+++.+..+...++..+..+...........+.+.+.... ....+...+.
T Consensus 272 ~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~ 349 (508)
T 3fho_A 272 LDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQ--SEEHKYNVLV 349 (508)
T ss_dssp TTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC----CHHHHHHHH
T ss_pred cccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECC--chHHHHHHHH
Confidence 87 78999999999999999999999999999999999999988887776555444455555554433 2234455566
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEE
Q 005773 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV 442 (678)
Q Consensus 363 ~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V 442 (678)
.++....++++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 350 ~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~V 429 (508)
T 3fho_A 350 ELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLV 429 (508)
T ss_dssp HHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEE
T ss_pred HHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEE
Confidence 66666677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCC------CChhHHHHHHhhcccCCCceEEEEEeeC-CcHHHHHHHHHHhcCccch
Q 005773 443 INYACP------RDLTSYVHRVGRTARAGREGYAVTFVTD-NDRSLLKAIAKRAGSKLKS 495 (678)
Q Consensus 443 I~~d~p------~s~~~yiQr~GRagR~g~~G~~i~l~~~-~d~~~l~~i~~~~~~~~~~ 495 (678)
|+|++| .++..|+||+||+||.|+.|.|++|+.+ .+...++.+.+..+..+..
T Consensus 430 I~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~ 489 (508)
T 3fho_A 430 VNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITR 489 (508)
T ss_dssp EC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-
T ss_pred EEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCccc
Confidence 999999 7899999999999999999999999984 5677788888887766654
No 19
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-48 Score=463.88 Aligned_cols=343 Identities=18% Similarity=0.205 Sum_probs=271.2
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcC
Q 005773 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (678)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~P 204 (678)
..|..+++++.+...+...++..|+|+|.++|+.++.|+++|++||||||||++|.+|++..+. .++++||++|
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~------~g~rvlvl~P 235 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSP 235 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH------TTCEEEEEES
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh------cCCeEEEEcC
Confidence 3566677777776666666677799999999999999999999999999999999999999873 3568999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc
Q 005773 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (678)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (678)
|++|+.|+++.+..++. .+++++|+.+ +...++|+|+||++|.+++... ...+.++++|||||||++.
T Consensus 236 traLa~Q~~~~l~~~~~----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~-~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 236 IKALSNQKYRELLAEFG----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp SHHHHHHHHHHHHHHTS----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHC-SSHHHHEEEEEEETGGGTT
T ss_pred cHHHHHHHHHHHHHHhC----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcC-ccccccCCEEEEhhhhhcc
Confidence 99999999999998754 6777888766 3456899999999999998875 3457889999999999999
Q ss_pred cCChHHHHHHHHHHCCCCccEEEEEeccChh--HHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEE---------echh
Q 005773 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTED--VDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRI---------RRMR 353 (678)
Q Consensus 285 ~~gf~~~i~~i~~~~~~~~q~il~SATl~~~--~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~---------~~~~ 353 (678)
+++|...+..++..++..+|+|+||||+++. +..++......|..+.... .++..+.+.++.. ....
T Consensus 304 d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~--~rp~pl~~~~~~~~~~~~~~~vd~~~ 381 (1108)
T 3l9o_A 304 DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN--FRPTPLQHYLFPAHGDGIYLVVDEKS 381 (1108)
T ss_dssp SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEEC--CCSSCEEEEEEETTSSCCEEEEETTT
T ss_pred ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC--CCcccceEEEeecCCcceeeeecccc
Confidence 9999999999999999999999999999864 4566666666665554432 2333333322210 0000
Q ss_pred h-------------------------------------------hhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHH
Q 005773 354 E-------------------------------------------VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF 390 (678)
Q Consensus 354 ~-------------------------------------------~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L 390 (678)
. ......+...+......++||||+++..|+.++..|
T Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L 461 (1108)
T 3l9o_A 382 TFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKM 461 (1108)
T ss_dssp EECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHT
T ss_pred chhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHH
Confidence 0 111122333334445679999999999999999988
Q ss_pred hhcCCc---------------------------------------eeeccCCCCHHHHHHHHHHHhcCCccEEEEccccc
Q 005773 391 GLAALK---------------------------------------AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431 (678)
Q Consensus 391 ~~~~~~---------------------------------------~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~ 431 (678)
...++. ++.+||+|++.+|..++..|++|.++|||||++++
T Consensus 462 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla 541 (1108)
T 3l9o_A 462 SKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFS 541 (1108)
T ss_dssp CSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCC
T ss_pred HhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHh
Confidence 653322 78999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEcCCCC--------ChhHHHHHHhhcccCC--CceEEEEEeeCC-cHHHHHHHHH
Q 005773 432 RGLDIIGVQTVINYACPR--------DLTSYVHRVGRTARAG--REGYAVTFVTDN-DRSLLKAIAK 487 (678)
Q Consensus 432 ~GlDi~~v~~VI~~d~p~--------s~~~yiQr~GRagR~g--~~G~~i~l~~~~-d~~~l~~i~~ 487 (678)
+|||+|++++||+++.|+ ++..|+||+|||||.| ..|.|++++++. +...+..+..
T Consensus 542 ~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~ 608 (1108)
T 3l9o_A 542 IGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 608 (1108)
T ss_dssp SCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHH
T ss_pred cCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhc
Confidence 999999999999887754 6677999999999999 689999999876 4555666554
No 20
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=8.5e-46 Score=419.76 Aligned_cols=332 Identities=17% Similarity=0.208 Sum_probs=202.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 005773 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (678)
Q Consensus 144 g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~ 223 (678)
+.-.|+|+|.++++.++.|+|+++++|||||||++|++|+++.+...+. ..++++|||+||++|+.|+++.+..++...
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc-cCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 3457999999999999999999999999999999999999998876543 235679999999999999999999999888
Q ss_pred CceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHH-HHHHH----
Q 005773 224 DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIH-ELVRL---- 298 (678)
Q Consensus 224 ~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~-~i~~~---- 298 (678)
++++..++|+......+..+..+++|+|+||++|.+++.......+.++++|||||||++.++++...+. .++..
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 162 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 162 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcc
Confidence 9999999999877666666666789999999999999987543378899999999999999887544432 33222
Q ss_pred CCCCccEEEEEeccCh-----------hHHHHHHHhcCCCeEEecCCC-------CCCCCCceeEEEEEec---------
Q 005773 299 CPKRRQTMLFSATLTE-----------DVDELIKLSLTKPLRLSADPS-------AKRPSTLTEEVVRIRR--------- 351 (678)
Q Consensus 299 ~~~~~q~il~SATl~~-----------~~~~l~~~~~~~p~~~~~~~~-------~~~~~~l~~~~~~~~~--------- 351 (678)
.++..|+++||||++. .+..+.... ........... ...+ .. ....+..
T Consensus 163 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 163 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-DIQAISTVRENIQELQRFMNKP-EI--DVRLVKRRIHNPFAAI 238 (556)
T ss_dssp ---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHH-TCSEEECCCTTHHHHHHHTCCC-CE--EEEECCCCSCCHHHHH
T ss_pred cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhc-CCeEecchhcchHHHHhcCCCC-ce--EEEEcCCCcCChHHHH
Confidence 1456899999999953 122222211 11110000000 0000 00 0000000
Q ss_pred -------------------------------------h------------------------------------------
Q 005773 352 -------------------------------------M------------------------------------------ 352 (678)
Q Consensus 352 -------------------------------------~------------------------------------------ 352 (678)
.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0
Q ss_pred --------------------------------------------------hhhhHHHHHHHHhh----ccCCceEEEEec
Q 005773 353 --------------------------------------------------REVNQEAVLLSLCS----KTFTSKVIIFSG 378 (678)
Q Consensus 353 --------------------------------------------------~~~~~~~~l~~~~~----~~~~~~vLVF~~ 378 (678)
....+...+..++. ...+.++||||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 00111222222222 145689999999
Q ss_pred cHHHHHHHHHHHhhc------------CCceeeccCCCCHHHHHHHHHHHhc-CCccEEEEcccccccCCCCCccEEEEc
Q 005773 379 TKQAAHRLKILFGLA------------ALKAAELHGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINY 445 (678)
Q Consensus 379 s~~~~~~l~~~L~~~------------~~~~~~lhg~l~~~~R~~~l~~F~~-g~~~vLvaT~~~~~GlDi~~v~~VI~~ 445 (678)
++..++.+..+|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+|
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 478 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEE
T ss_pred cHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999765 4555667888999999999999999 999999999999999999999999999
Q ss_pred CCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHH
Q 005773 446 ACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482 (678)
Q Consensus 446 d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l 482 (678)
|+|+|+..|+||+|| ||. ++|.+++|+++.+....
T Consensus 479 d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 479 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp TCCSCHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 999999999999999 997 79999999998765433
No 21
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=4.2e-45 Score=413.98 Aligned_cols=325 Identities=21% Similarity=0.230 Sum_probs=250.4
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 142 ~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
.+|| .|+|+|..++|.++.|+ |+.++||+|||++|.+|++...+ .++.|+||+||++||.|+++++..++.
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL------~g~~vlVltptreLA~qd~e~~~~l~~ 149 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL------TGKGVHVVTVNEYLASRDAEQMGKIFE 149 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT------TSSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH------cCCCEEEEeCCHHHHHHHHHHHHHHHh
Confidence 5899 89999999999999999 99999999999999999985433 234699999999999999999999999
Q ss_pred cCCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccC-----ccCCCCeeEEEEeCCcccc-cCC-------
Q 005773 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-ELG------- 287 (678)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~ll-~~g------- 287 (678)
+.++++++++||.+...+.. ..++||+|+||++| .++|.... .+.++.+.++||||||+|+ +.+
T Consensus 150 ~lgl~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIis 227 (844)
T 1tf5_A 150 FLGLTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIIS 227 (844)
T ss_dssp HTTCCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEE
T ss_pred hcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhc
Confidence 99999999999987654433 34689999999999 66665432 3567899999999999998 654
Q ss_pred --------hHHHHHHHHHHCC---------CCccEE-----------------EEEeccCh---hHHHHHH--HhcC-CC
Q 005773 288 --------FSAEIHELVRLCP---------KRRQTM-----------------LFSATLTE---DVDELIK--LSLT-KP 327 (678)
Q Consensus 288 --------f~~~i~~i~~~~~---------~~~q~i-----------------l~SATl~~---~~~~l~~--~~~~-~p 327 (678)
|...+..++..++ +.+|++ +||||++. .+...++ .++. ++
T Consensus 228 g~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~ 307 (844)
T 1tf5_A 228 GQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDV 307 (844)
T ss_dssp EEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTT
T ss_pred CCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCC
Confidence 6788889998887 478888 99999874 3333221 1221 11
Q ss_pred eEE-------ecCCCCCC------------------------CC-----Ccee---------------------------
Q 005773 328 LRL-------SADPSAKR------------------------PS-----TLTE--------------------------- 344 (678)
Q Consensus 328 ~~~-------~~~~~~~~------------------------~~-----~l~~--------------------------- 344 (678)
..+ .++....+ +. .+.+
T Consensus 308 dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~i 387 (844)
T 1tf5_A 308 DYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNI 387 (844)
T ss_dssp TEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHH
T ss_pred ceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHH
Confidence 111 01000000 00 0000
Q ss_pred ---EEEEEe--------------chhhhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCC
Q 005773 345 ---EVVRIR--------------RMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405 (678)
Q Consensus 345 ---~~~~~~--------------~~~~~~~~~~l~~~~~~--~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~ 405 (678)
.++.++ ......+...+...+.. ..+.++||||+|+..++.|+..|...|+.+..|||++.
T Consensus 388 Y~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~ 467 (844)
T 1tf5_A 388 YNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH 467 (844)
T ss_dssp HCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH
T ss_pred hCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCcc
Confidence 000000 01223444445544432 24678999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCccEEEEcccccccCCCC--------CccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCC
Q 005773 406 QAQRLEALELFRKQHVDFLIATDVAARGLDII--------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN 477 (678)
Q Consensus 406 ~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~--------~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~ 477 (678)
+.+|..+...|+.| .||||||+|+||+||+ ++.+||||++|.+...|+||+|||||+|.+|.+++|++..
T Consensus 468 ~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~e 545 (844)
T 1tf5_A 468 EREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSME 545 (844)
T ss_dssp HHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETT
T ss_pred HHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHH
Confidence 88887666666655 6999999999999999 8899999999999999999999999999999999999987
Q ss_pred cH
Q 005773 478 DR 479 (678)
Q Consensus 478 d~ 479 (678)
|.
T Consensus 546 D~ 547 (844)
T 1tf5_A 546 DE 547 (844)
T ss_dssp SS
T ss_pred HH
Confidence 74
No 22
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.6e-45 Score=429.15 Aligned_cols=346 Identities=19% Similarity=0.231 Sum_probs=223.7
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 005773 137 LRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (678)
Q Consensus 137 ~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 216 (678)
..++..+||..|+|+|.+++++++.|+|+|+++|||||||++|++|+++.+...+.. .++++|||+||++|+.|+++.+
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~-~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTT-CCCCEEEECSSHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccC-CCCeEEEEECCHHHHHHHHHHH
Confidence 345677899999999999999999999999999999999999999999988765432 2367999999999999999999
Q ss_pred HHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCC-hHHHHHHH
Q 005773 217 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-FSAEIHEL 295 (678)
Q Consensus 217 ~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g-f~~~i~~i 295 (678)
.+++...++++..++|+.....+...+..+++|+|+||++|.+.+.......+.++++|||||||++.++. +...+..+
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~ 161 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 161 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHH
Confidence 99988789999999998876555555666789999999999999987533368899999999999998665 22223223
Q ss_pred HHH-----CCCCccEEEEEeccC-------hhH-HHHHHH---------------------hcCCCeEEecCCCCCCCC-
Q 005773 296 VRL-----CPKRRQTMLFSATLT-------EDV-DELIKL---------------------SLTKPLRLSADPSAKRPS- 340 (678)
Q Consensus 296 ~~~-----~~~~~q~il~SATl~-------~~~-~~l~~~---------------------~~~~p~~~~~~~~~~~~~- 340 (678)
+.. .+..+++|++|||+. ... ..+... +...|.............
T Consensus 162 l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 241 (696)
T 2ykg_A 162 LDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241 (696)
T ss_dssp HHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCH
T ss_pred HHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCCh
Confidence 332 246789999999997 221 221111 111121110000000000
Q ss_pred --------------------------------------------------------------------------------
Q 005773 341 -------------------------------------------------------------------------------- 340 (678)
Q Consensus 341 -------------------------------------------------------------------------------- 340 (678)
T Consensus 242 fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 321 (696)
T 2ykg_A 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 321 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhH
Confidence
Q ss_pred ------------------------------CceeEEEE-------------EechhhhhHHHHHHHHhhcc----CCceE
Q 005773 341 ------------------------------TLTEEVVR-------------IRRMREVNQEAVLLSLCSKT----FTSKV 373 (678)
Q Consensus 341 ------------------------------~l~~~~~~-------------~~~~~~~~~~~~l~~~~~~~----~~~~v 373 (678)
.+.+.+.. ........+...+..++... .++++
T Consensus 322 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~ 401 (696)
T 2ykg_A 322 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 401 (696)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCE
T ss_pred HHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcE
Confidence 00000000 00000112333344444332 56799
Q ss_pred EEEeccHHHHHHHHHHHhhcC----Cceeec--------cCCCCHHHHHHHHHHHhc-CCccEEEEcccccccCCCCCcc
Q 005773 374 IIFSGTKQAAHRLKILFGLAA----LKAAEL--------HGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQ 440 (678)
Q Consensus 374 LVF~~s~~~~~~l~~~L~~~~----~~~~~l--------hg~l~~~~R~~~l~~F~~-g~~~vLvaT~~~~~GlDi~~v~ 440 (678)
||||+++..++.++.+|...+ +.+..+ ||+|++.+|..+++.|++ |+.+|||||+++++|||+|+|+
T Consensus 402 IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~ 481 (696)
T 2ykg_A 402 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 481 (696)
T ss_dssp EEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCS
T ss_pred EEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCC
Confidence 999999999999999999887 888888 559999999999999998 9999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHH
Q 005773 441 TVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485 (678)
Q Consensus 441 ~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i 485 (678)
+||+||+|+|+..|+||+|| ||. +.|.+++|++..+......+
T Consensus 482 ~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 482 LVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp EEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 99999999999999999999 997 78999999998776555444
No 23
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=9.3e-45 Score=435.45 Aligned_cols=319 Identities=19% Similarity=0.255 Sum_probs=256.9
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 142 ~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
.+|| .|||+|.++||.++.|+|++++||||||||++|+++++..+ ..++++|||+||++||.|+++.+..++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~------~~~~~~Lil~PtreLa~Q~~~~l~~l~- 145 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------RKGKKSALVFPTVTLVKQTLERLQKLA- 145 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH------TTTCCEEEEESSHHHHHHHHHHHHTTS-
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH------hcCCeEEEEechHHHHHHHHHHHHHhh-
Confidence 4788 59999999999999999999999999999998888887776 235679999999999999999999987
Q ss_pred cCCceeEEEecCCCh---HHHHHHhcCC-CCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc----------c-C
Q 005773 222 FTDIRCCLVVGGLST---KMQETALRSM-PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL----------E-L 286 (678)
Q Consensus 222 ~~~~~v~~~~g~~~~---~~~~~~l~~~-~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll----------~-~ 286 (678)
..++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||+++ + +
T Consensus 146 ~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 146 DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 778999999999887 5556666655 99999999999888764 567799999999997654 4 8
Q ss_pred ChHHH-HHHHHHHCC-----------CCccEEEEEec-cChhHHH-HHHHhcCCCeEEecCCCCCCCCCceeEEEEEech
Q 005773 287 GFSAE-IHELVRLCP-----------KRRQTMLFSAT-LTEDVDE-LIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRM 352 (678)
Q Consensus 287 gf~~~-i~~i~~~~~-----------~~~q~il~SAT-l~~~~~~-l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~ 352 (678)
||... +..++..++ ..+|+++|||| .+..+.. +....+. +.+.........+.+.++..
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~--- 295 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS--- 295 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---
Confidence 88888 888888877 88999999999 4544432 2222222 22222233344555554433
Q ss_pred hhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCcee-eccCCCCHHHHHHHHHHHhcCCccEEEE----c
Q 005773 353 REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAA-ELHGNLTQAQRLEALELFRKQHVDFLIA----T 427 (678)
Q Consensus 353 ~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~-~lhg~l~~~~R~~~l~~F~~g~~~vLva----T 427 (678)
.+...+..++.. .++++||||+++..++.++.+|...++.+. .+|| +|.+ ++.|++|+.+|||| |
T Consensus 296 ---~k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~T 365 (1104)
T 4ddu_A 296 ---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYY 365 (1104)
T ss_dssp ---CCHHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTH
T ss_pred ---CHHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCC
Confidence 233344444444 358999999999999999999999999998 9999 2555 99999999999999 9
Q ss_pred ccccccCCCCC-ccEEEEcCCCC---------------------------------------------------------
Q 005773 428 DVAARGLDIIG-VQTVINYACPR--------------------------------------------------------- 449 (678)
Q Consensus 428 ~~~~~GlDi~~-v~~VI~~d~p~--------------------------------------------------------- 449 (678)
++++||||+|+ |++|||||+|.
T Consensus 366 dvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~ 445 (1104)
T 4ddu_A 366 GKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMF 445 (1104)
T ss_dssp HHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_pred CeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhcc
Confidence 99999999999 99999999998
Q ss_pred ---------------ChhHHHHHHhhcccCCC----ceEEEEEeeCCcHHHHHHHHHHhc
Q 005773 450 ---------------DLTSYVHRVGRTARAGR----EGYAVTFVTDNDRSLLKAIAKRAG 490 (678)
Q Consensus 450 ---------------s~~~yiQr~GRagR~g~----~G~~i~l~~~~d~~~l~~i~~~~~ 490 (678)
++.+|+||+|||||.|. .|.+++++ .|...++.|.+..+
T Consensus 446 ~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 446 RGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 503 (1104)
T ss_dssp CSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred ceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHh
Confidence 78899999999999543 45555555 78888888887764
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=6.4e-45 Score=412.17 Aligned_cols=333 Identities=19% Similarity=0.178 Sum_probs=230.5
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (678)
.|+|+|.++++.++.|+++++++|||||||++|++|+++.+...+. ..++++|||+||++|+.|+++.+..++...+++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC-GQKGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-CCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcE
Confidence 5999999999999999999999999999999999999998876543 235679999999999999999999999888999
Q ss_pred eEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCCh-HHHHHHHHHHC-----C
Q 005773 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF-SAEIHELVRLC-----P 300 (678)
Q Consensus 227 v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf-~~~i~~i~~~~-----~ 300 (678)
+..++|+......+..+..+++|+|+||++|..++.......+.++++|||||||++.+.+. ...+..++... .
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRD 162 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCS
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccC
Confidence 99999998777666666667899999999999999875433688899999999999998753 33333443332 2
Q ss_pred CCccEEEEEeccChh-----------HHHHHHHhcCCCeEEecCC------CCCCCCCceeEEEEEec-h----------
Q 005773 301 KRRQTMLFSATLTED-----------VDELIKLSLTKPLRLSADP------SAKRPSTLTEEVVRIRR-M---------- 352 (678)
Q Consensus 301 ~~~q~il~SATl~~~-----------~~~l~~~~~~~p~~~~~~~------~~~~~~~l~~~~~~~~~-~---------- 352 (678)
..+|++++|||++.. +..+.. .+..+....... .....+... ...+.. .
T Consensus 163 ~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 239 (555)
T 3tbk_A 163 PLPQVVGLTASVGVGDAKTAEEAMQHICKLCA-ALDASVIATVRDNVAELEQVVYKPQKI--SRKVASRTSNTFKCIISQ 239 (555)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHH-HTTCSEEECCCSCHHHHHTTCCCCCEE--EEECCCCSCCHHHHHHHH
T ss_pred CCCeEEEEecCcccCccccHHHHHHHHHHHHH-hcCCeeeeccccCHHHHHhhcCCCceE--EEEecCcccChHHHHHHH
Confidence 457999999999542 111111 122111111000 000000000 000000 0
Q ss_pred --------------------------------------------------------------------------------
Q 005773 353 -------------------------------------------------------------------------------- 352 (678)
Q Consensus 353 -------------------------------------------------------------------------------- 352 (678)
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (555)
T 3tbk_A 240 LMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISED 319 (555)
T ss_dssp HHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence
Q ss_pred ------------------------------------------------hhhhHHHHHHHHhh----ccCCceEEEEeccH
Q 005773 353 ------------------------------------------------REVNQEAVLLSLCS----KTFTSKVIIFSGTK 380 (678)
Q Consensus 353 ------------------------------------------------~~~~~~~~l~~~~~----~~~~~~vLVF~~s~ 380 (678)
....+...+..++. ...+.++||||+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~ 399 (555)
T 3tbk_A 320 AQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTR 399 (555)
T ss_dssp SCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSH
T ss_pred hhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcH
Confidence 00112222222222 23568999999999
Q ss_pred HHHHHHHHHHhhcC------------CceeeccCCCCHHHHHHHHHHHhc-CCccEEEEcccccccCCCCCccEEEEcCC
Q 005773 381 QAAHRLKILFGLAA------------LKAAELHGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYAC 447 (678)
Q Consensus 381 ~~~~~l~~~L~~~~------------~~~~~lhg~l~~~~R~~~l~~F~~-g~~~vLvaT~~~~~GlDi~~v~~VI~~d~ 447 (678)
..++.++.+|...+ .....+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||+
T Consensus 400 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~ 479 (555)
T 3tbk_A 400 ALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEY 479 (555)
T ss_dssp HHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESC
T ss_pred HHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCC
Confidence 99999999998763 344555669999999999999999 99999999999999999999999999999
Q ss_pred CCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHH
Q 005773 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAI 485 (678)
Q Consensus 448 p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i 485 (678)
|+|+..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 480 p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 480 VGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 9999999999999 997 89999999998876655444
No 25
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2e-44 Score=424.75 Aligned_cols=338 Identities=17% Similarity=0.184 Sum_probs=210.4
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 142 ~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
.+|+..|+|+|.++|+.++.|+|+|+++|||||||++|++|+++.+...+. ..++++|||+||++|+.|+++.+..++.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-cCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 457889999999999999999999999999999999999999999876532 2356899999999999999999999998
Q ss_pred cCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHH-HHHHHHH--
Q 005773 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAE-IHELVRL-- 298 (678)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~-i~~i~~~-- 298 (678)
..++++..++|+.........+..+++|+|+||++|.+++.......+.++++|||||||++.+.+.... +..++..
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 8899999999998777666667778999999999999999875333688999999999999997654333 3333332
Q ss_pred --CCCCccEEEEEeccCh-----------hHHHHHHHh------------------cCCCeEEecCCCCCCCCCce----
Q 005773 299 --CPKRRQTMLFSATLTE-----------DVDELIKLS------------------LTKPLRLSADPSAKRPSTLT---- 343 (678)
Q Consensus 299 --~~~~~q~il~SATl~~-----------~~~~l~~~~------------------~~~p~~~~~~~~~~~~~~l~---- 343 (678)
....+|++++|||++. .+..+.... +..|...........+..+.
T Consensus 402 ~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (797)
T 4a2q_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (797)
T ss_dssp TTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHH
Confidence 1556899999999952 222222111 11111110000000000000
Q ss_pred ----------eE------EEEE-----ec------h--------------------------------------------
Q 005773 344 ----------EE------VVRI-----RR------M-------------------------------------------- 352 (678)
Q Consensus 344 ----------~~------~~~~-----~~------~-------------------------------------------- 352 (678)
.. +..+ .. .
T Consensus 482 ~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 561 (797)
T 4a2q_A 482 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (797)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 00 0000 00 0
Q ss_pred ------------------------------------------------hhhhHHHHHHHHhh----ccCCceEEEEeccH
Q 005773 353 ------------------------------------------------REVNQEAVLLSLCS----KTFTSKVIIFSGTK 380 (678)
Q Consensus 353 ------------------------------------------------~~~~~~~~l~~~~~----~~~~~~vLVF~~s~ 380 (678)
....+...+..++. ...+.++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~ 641 (797)
T 4a2q_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (797)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSH
T ss_pred ccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcH
Confidence 00111122222222 24568999999999
Q ss_pred HHHHHHHHHHhhc------------CCceeeccCCCCHHHHHHHHHHHhc-CCccEEEEcccccccCCCCCccEEEEcCC
Q 005773 381 QAAHRLKILFGLA------------ALKAAELHGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYAC 447 (678)
Q Consensus 381 ~~~~~l~~~L~~~------------~~~~~~lhg~l~~~~R~~~l~~F~~-g~~~vLvaT~~~~~GlDi~~v~~VI~~d~ 447 (678)
..++.+..+|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||+
T Consensus 642 ~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp HHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC
T ss_pred HHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999763 5566677899999999999999999 99999999999999999999999999999
Q ss_pred CCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHH
Q 005773 448 PRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLL 482 (678)
Q Consensus 448 p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l 482 (678)
|+|+..|+||+|| ||. ++|.|++|+++.+....
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 754 (797)
T ss_dssp CSCHHHHHTC---------CCCEEEEECCHHHHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHHH
Confidence 9999999999999 998 79999999988765433
No 26
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.1e-43 Score=414.40 Aligned_cols=336 Identities=21% Similarity=0.272 Sum_probs=262.7
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEE
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~-ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl 202 (678)
..+|++++|++.+.+.+..+||..|+|+|.++++. +..+++++++||||||||++|.+++++.+... +.++||+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----~~~il~i 81 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-----GGKAIYV 81 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----CSEEEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-----CCeEEEE
Confidence 35699999999999999999999999999999999 78899999999999999999999999887643 4589999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc
Q 005773 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (678)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (678)
+|+++||.|+++.++.+.. .+++++.++|+....... ...++|+|+||++|...+... ...+.++++|||||||.
T Consensus 82 ~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~-~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 82 TPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHR-PEWLNEVNYFVLDELHY 156 (715)
T ss_dssp CSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHC-CGGGGGEEEEEECSGGG
T ss_pred eCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCC-hhHhhccCEEEEechhh
Confidence 9999999999999865543 488999999876554321 236899999999999988774 34478999999999999
Q ss_pred cccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEE-----------Eec
Q 005773 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVR-----------IRR 351 (678)
Q Consensus 283 ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~-----------~~~ 351 (678)
+.++++...+..++..++ ..|+|++|||+++ ...+... +..+. +.. ..++..+...+.. +..
T Consensus 157 l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~-l~~~~-~~~---~~r~~~l~~~~~~~~~~~~~~~~~~~~ 229 (715)
T 2va8_A 157 LNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKW-LGAEP-VAT---NWRPVPLIEGVIYPERKKKEYNVIFKD 229 (715)
T ss_dssp GGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHH-HTCEE-EEC---CCCSSCEEEEEEEECSSTTEEEEEETT
T ss_pred cCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHH-hCCCc-cCC---CCCCCCceEEEEecCCcccceeeecCc
Confidence 998888888888776665 7899999999975 3444433 33222 111 1122222222111 110
Q ss_pred -----hh-hhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcC-------------------------------
Q 005773 352 -----MR-EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAA------------------------------- 394 (678)
Q Consensus 352 -----~~-~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~------------------------------- 394 (678)
.. .......+...+. .++++||||+++..++.++..|....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 307 (715)
T 2va8_A 230 NTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELL 307 (715)
T ss_dssp SCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHH
T ss_pred chhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHH
Confidence 00 1122223333332 46899999999999999999887532
Q ss_pred -----CceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEE----cC-------CCCChhHHHHHH
Q 005773 395 -----LKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YA-------CPRDLTSYVHRV 458 (678)
Q Consensus 395 -----~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~----~d-------~p~s~~~yiQr~ 458 (678)
..+..+||+|++.+|..+++.|++|..+|||||+++++|||+|++++||+ || .|.+..+|+||+
T Consensus 308 ~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~ 387 (715)
T 2va8_A 308 KSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMS 387 (715)
T ss_dssp HHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHH
T ss_pred HHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHh
Confidence 35899999999999999999999999999999999999999999999999 99 899999999999
Q ss_pred hhcccCC--CceEEEEEeeCCc
Q 005773 459 GRTARAG--REGYAVTFVTDND 478 (678)
Q Consensus 459 GRagR~g--~~G~~i~l~~~~d 478 (678)
|||||.| ..|.|+++++..+
T Consensus 388 GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 388 GRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp TTBCCTTTCSCEEEEEECSCGG
T ss_pred hhcCCCCCCCCceEEEEeCCch
Confidence 9999987 4899999998766
No 27
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.3e-44 Score=430.99 Aligned_cols=321 Identities=23% Similarity=0.314 Sum_probs=255.3
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 005773 141 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (678)
Q Consensus 141 ~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 220 (678)
..+||. | |+|.++||.++.|+|+++++|||||||+ |++|++..+... ++++|||+||++||.|+++.+..++
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~-----~~~~lil~PtreLa~Q~~~~l~~l~ 123 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK-----GKRCYVIFPTSLLVIQAAETIRKYA 123 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT-----SCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc-----CCeEEEEeccHHHHHHHHHHHHHHH
Confidence 348999 9 9999999999999999999999999998 899999887643 4679999999999999999999999
Q ss_pred hcCCc----eeEEEecCCChHHH---HHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHH
Q 005773 221 QFTDI----RCCLVVGGLSTKMQ---ETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIH 293 (678)
Q Consensus 221 ~~~~~----~v~~~~g~~~~~~~---~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~ 293 (678)
...++ ++..++|+.+...+ ...+.. ++|+|+||++|.+++.+ ++++++|||||||+|++|+ ..+.
T Consensus 124 ~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~~~--~~~~ 195 (1054)
T 1gku_B 124 EKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILKAS--KNVD 195 (1054)
T ss_dssp TTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHTST--HHHH
T ss_pred hhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhhcc--ccHH
Confidence 88888 89999999887663 344555 99999999999987765 6689999999999999965 4555
Q ss_pred HHHHHC-----------CCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHH
Q 005773 294 ELVRLC-----------PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLL 362 (678)
Q Consensus 294 ~i~~~~-----------~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 362 (678)
.++..+ +..+|++++|||+++. ..+...++..+..+.+.........+.+.++. ..+...+.
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~------~~k~~~L~ 268 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN------DESISTLS 268 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES------CCCTTTTH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec------hhHHHHHH
Confidence 565555 4568999999999987 43333333333333333332233344444431 22233344
Q ss_pred HHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEE----cccccccCCCCC
Q 005773 363 SLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIA----TDVAARGLDIIG 438 (678)
Q Consensus 363 ~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLva----T~~~~~GlDi~~ 438 (678)
.++... ++++||||+++..++.++..|... +.+..+||++. .+++.|++|+.+|||| |+++++|||+|+
T Consensus 269 ~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~ 341 (1054)
T 1gku_B 269 SILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPE 341 (1054)
T ss_dssp HHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTT
T ss_pred HHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCC
Confidence 444443 578999999999999999999988 99999999984 7789999999999999 999999999999
Q ss_pred c-cEEEEcCCC---------------------------------------------------------------------
Q 005773 439 V-QTVINYACP--------------------------------------------------------------------- 448 (678)
Q Consensus 439 v-~~VI~~d~p--------------------------------------------------------------------- 448 (678)
| ++||+||+|
T Consensus 342 VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 421 (1054)
T 1gku_B 342 RIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEV 421 (1054)
T ss_dssp TCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEE
T ss_pred cccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecce
Confidence 6 999999999
Q ss_pred --CChhHHHHHHhhcccCCCce--EEEEEeeCCcHHHHHHHHHHhcC
Q 005773 449 --RDLTSYVHRVGRTARAGREG--YAVTFVTDNDRSLLKAIAKRAGS 491 (678)
Q Consensus 449 --~s~~~yiQr~GRagR~g~~G--~~i~l~~~~d~~~l~~i~~~~~~ 491 (678)
.++.+|+||+|||||.|..| .+++|+...+...+..|.+.++.
T Consensus 422 ~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 422 IFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred ecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987665 48888888899999998887764
No 28
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=5.8e-44 Score=416.68 Aligned_cols=335 Identities=21% Similarity=0.269 Sum_probs=267.7
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcC
Q 005773 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPL-ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (678)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~-ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~P 204 (678)
+|.+++|++.+.+.+..+||..|+|+|.++++. +..++++++++|||||||++|.+|+++.+... +.++||++|
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----~~~~l~i~P 76 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-----GGKAVYIVP 76 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-----CSEEEEECS
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----CCEEEEEcC
Confidence 588999999999999999999999999999998 88899999999999999999999999888643 458999999
Q ss_pred cHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc
Q 005773 205 TRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (678)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (678)
+++||.|+++.+..+.. .+++++.++|+...... ....++|+|+||++|..++... ...+.++++|||||||.+.
T Consensus 77 ~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~-~~~l~~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 77 LKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHG-SSWIKDVKILVADEIHLIG 151 (720)
T ss_dssp SGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHT-CTTGGGEEEEEEETGGGGG
T ss_pred cHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcC-hhhhhcCCEEEEECCcccC
Confidence 99999999999976654 38899999997654432 1246899999999999888774 3447899999999999999
Q ss_pred cCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEE-----EEech---hhhh
Q 005773 285 ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-----RIRRM---REVN 356 (678)
Q Consensus 285 ~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~-----~~~~~---~~~~ 356 (678)
++++...+..++..++...|+|++|||+++ ...+.. ++..+. +. ...++..+...+. .+... ....
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~---~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T 2zj8_A 152 SRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAE-WLNAEL-IV---SDWRPVKLRRGVFYQGFVTWEDGSIDRFSS 225 (720)
T ss_dssp CTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHH-HTTEEE-EE---CCCCSSEEEEEEEETTEEEETTSCEEECSS
T ss_pred CCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHH-HhCCcc-cC---CCCCCCcceEEEEeCCeeeccccchhhhhH
Confidence 988888888888877778999999999985 333433 333221 11 1112322222211 11100 0111
Q ss_pred HHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc---------------------------------CCceeeccCC
Q 005773 357 QEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA---------------------------------ALKAAELHGN 403 (678)
Q Consensus 357 ~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~---------------------------------~~~~~~lhg~ 403 (678)
....+...+. .++++||||+++..++.++..|... ...+..+||+
T Consensus 226 ~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~ 303 (720)
T 2zj8_A 226 WEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAG 303 (720)
T ss_dssp TTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTT
T ss_pred HHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCC
Confidence 2223333332 3589999999999999999888643 1248999999
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEE----cC----CCCChhHHHHHHhhcccCC--CceEEEEE
Q 005773 404 LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YA----CPRDLTSYVHRVGRTARAG--REGYAVTF 473 (678)
Q Consensus 404 l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~----~d----~p~s~~~yiQr~GRagR~g--~~G~~i~l 473 (678)
|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.++.+|+||+|||||.| ..|.|+++
T Consensus 304 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 383 (720)
T 2zj8_A 304 LGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIV 383 (720)
T ss_dssp SCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999998 77 6899999999999999987 58999999
Q ss_pred eeCCc
Q 005773 474 VTDND 478 (678)
Q Consensus 474 ~~~~d 478 (678)
++..+
T Consensus 384 ~~~~~ 388 (720)
T 2zj8_A 384 STSDD 388 (720)
T ss_dssp CSSSC
T ss_pred ecCcc
Confidence 99887
No 29
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4.2e-44 Score=416.69 Aligned_cols=334 Identities=22% Similarity=0.284 Sum_probs=261.5
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 126 SFMELN--LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 126 ~f~~l~--l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
+|++++ |++.+.+.+..+||..|+|+|.++++.++.|+++++++|||||||++|.+|+++.+.. ++++||++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------~~~~l~i~ 75 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------GGKSLYVV 75 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT------TCCEEEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh------CCcEEEEe
Confidence 577888 9999999999999999999999999999999999999999999999999999988753 35799999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccc
Q 005773 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (678)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (678)
|+++||.|+++.++.+.. .+++++.++|+...... ....++|+|+||++|...+.+. ...+.++++|||||||.+
T Consensus 76 P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~-~~~l~~~~~vIiDE~H~l 150 (702)
T 2p6r_A 76 PLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNR-ASWIKAVSCLVVDEIHLL 150 (702)
T ss_dssp SSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTT-CSGGGGCCEEEETTGGGG
T ss_pred CcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcC-hhHHhhcCEEEEeeeeec
Confidence 999999999999865543 47899999987654332 2347899999999999988874 334789999999999999
Q ss_pred ccCChHHHHHHHHHHC---CCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEE-----EEech---
Q 005773 284 LELGFSAEIHELVRLC---PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVV-----RIRRM--- 352 (678)
Q Consensus 284 l~~gf~~~i~~i~~~~---~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~-----~~~~~--- 352 (678)
.++++...+..++..+ .+..|+|++|||+++ ...+.. ++..+. +.. ..++..+...+. .+...
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~---~~r~~~l~~~~~~~~~~~~~~~~~~ 224 (702)
T 2p6r_A 151 DSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVS---DWRPVPLVEGVLCEGTLELFDGAFS 224 (702)
T ss_dssp GCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EEC---CCCSSCEEEEEECSSEEEEEETTEE
T ss_pred CCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccC---CCCCccceEEEeeCCeeeccCcchh
Confidence 9988777666665444 578999999999985 344444 333322 111 112222222111 11110
Q ss_pred --hhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc------------------------------CCceeec
Q 005773 353 --REVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA------------------------------ALKAAEL 400 (678)
Q Consensus 353 --~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~------------------------------~~~~~~l 400 (678)
........+...+. .++++||||+++..++.++..|... +..+..+
T Consensus 225 ~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~ 302 (702)
T 2p6r_A 225 TSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFH 302 (702)
T ss_dssp EEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEE
T ss_pred hhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEe
Confidence 00012233333332 4689999999999999999888642 2468889
Q ss_pred cCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEE----cC---CCCChhHHHHHHhhcccCC--CceEEE
Q 005773 401 HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YA---CPRDLTSYVHRVGRTARAG--REGYAV 471 (678)
Q Consensus 401 hg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~----~d---~p~s~~~yiQr~GRagR~g--~~G~~i 471 (678)
||+|++.+|..+++.|++|..+|||||+++++|||+|++++||+ || .|.++.+|+||+|||||.| ..|.|+
T Consensus 303 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 382 (702)
T 2p6r_A 303 HAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAI 382 (702)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEE
T ss_pred cCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999999 76 7899999999999999988 589999
Q ss_pred EEeeCCc
Q 005773 472 TFVTDND 478 (678)
Q Consensus 472 ~l~~~~d 478 (678)
++++..+
T Consensus 383 ~l~~~~~ 389 (702)
T 2p6r_A 383 IIVGKRD 389 (702)
T ss_dssp EECCGGG
T ss_pred EEecCcc
Confidence 9999877
No 30
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.5e-43 Score=421.78 Aligned_cols=338 Identities=17% Similarity=0.189 Sum_probs=209.2
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHh
Q 005773 141 EALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIA 220 (678)
Q Consensus 141 ~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~ 220 (678)
.-.|+..|+|+|.++|+.++.|++++++++||||||++|++|+++.+...+. ..++++|||+||++|+.|+++.+..++
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~-~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS-SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc-cCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 3446788999999999999999999999999999999999999988765432 225679999999999999999999998
Q ss_pred hcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChH-HHHHHHHHH-
Q 005773 221 QFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS-AEIHELVRL- 298 (678)
Q Consensus 221 ~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~-~~i~~i~~~- 298 (678)
...++++..++|+.....+...+..+++|+|+||++|.+++.......+.++++|||||||++.+.+.. ..+..++..
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 888999999999987665555555678999999999999998754336888999999999999977543 333333332
Q ss_pred ---CCCCccEEEEEeccCh-----------hHHHHHHH------------------hcCCCeEEecCCCCCCCCCce---
Q 005773 299 ---CPKRRQTMLFSATLTE-----------DVDELIKL------------------SLTKPLRLSADPSAKRPSTLT--- 343 (678)
Q Consensus 299 ---~~~~~q~il~SATl~~-----------~~~~l~~~------------------~~~~p~~~~~~~~~~~~~~l~--- 343 (678)
....+|+++||||+.. .+..+... ++..|...........+....
T Consensus 401 ~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l 480 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (936)
T ss_dssp HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHH
T ss_pred hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHH
Confidence 1456899999999952 22222211 111121111100000000000
Q ss_pred ---------------------eEE-EEEec------h-------------------------------------------
Q 005773 344 ---------------------EEV-VRIRR------M------------------------------------------- 352 (678)
Q Consensus 344 ---------------------~~~-~~~~~------~------------------------------------------- 352 (678)
... ..+.. .
T Consensus 481 ~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~ 560 (936)
T 4a2w_A 481 SNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (936)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 000 00000 0
Q ss_pred -------------------------------------------------hhhhHHHHHHHHhhc----cCCceEEEEecc
Q 005773 353 -------------------------------------------------REVNQEAVLLSLCSK----TFTSKVIIFSGT 379 (678)
Q Consensus 353 -------------------------------------------------~~~~~~~~l~~~~~~----~~~~~vLVF~~s 379 (678)
....+...+..++.. ..+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t 640 (936)
T 4a2w_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (936)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESS
T ss_pred chhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence 000111122222222 446899999999
Q ss_pred HHHHHHHHHHHhhc------------CCceeeccCCCCHHHHHHHHHHHhc-CCccEEEEcccccccCCCCCccEEEEcC
Q 005773 380 KQAAHRLKILFGLA------------ALKAAELHGNLTQAQRLEALELFRK-QHVDFLIATDVAARGLDIIGVQTVINYA 446 (678)
Q Consensus 380 ~~~~~~l~~~L~~~------------~~~~~~lhg~l~~~~R~~~l~~F~~-g~~~vLvaT~~~~~GlDi~~v~~VI~~d 446 (678)
+..++.|..+|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEES
T ss_pred HHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeC
Confidence 99999999999876 5556667889999999999999999 9999999999999999999999999999
Q ss_pred CCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHH
Q 005773 447 CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (678)
Q Consensus 447 ~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~ 481 (678)
+|+|+..|+||+|| ||. +.|.+++|++..+...
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (936)
T ss_dssp CCSCSHHHHCC---------CCCEEEEESCHHHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHH
Confidence 99999999999999 997 7899999998876543
No 31
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4.2e-43 Score=396.42 Aligned_cols=325 Identities=17% Similarity=0.174 Sum_probs=226.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
+|. +|+++|..++|.++.|+ |+.++||||||++|++|++...+. ++.++||+||++||.|+++++..++.+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~------g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT------GKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT------SSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 575 79999999999999998 999999999999999999865432 346899999999999999999999999
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccC-----ccCCCCeeEEEEeCCcccc-cC---------
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-EL--------- 286 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~ll-~~--------- 286 (678)
.++++++++||.+.... .+..+++|+|+||++| .++|.... ...++.+.++||||||+|+ +.
T Consensus 142 lgl~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg 219 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISG 219 (853)
T ss_dssp TTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEE
T ss_pred cCCeEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccC
Confidence 99999999999876533 3344689999999999 78887643 2557899999999999998 44
Q ss_pred ------ChHHHHHHHHHHCCC--------------------CccEE------------------------EEEeccCh--
Q 005773 287 ------GFSAEIHELVRLCPK--------------------RRQTM------------------------LFSATLTE-- 314 (678)
Q Consensus 287 ------gf~~~i~~i~~~~~~--------------------~~q~i------------------------l~SATl~~-- 314 (678)
+|...+..++..+++ .+|++ +||||++.
T Consensus 220 ~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~ 299 (853)
T 2fsf_A 220 PAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLM 299 (853)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred CCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHH
Confidence 356677777777764 56654 89999764
Q ss_pred -hHHHHH--HHhc---------------------------------CCC----eEEecCCCCCCCCCceeE---------
Q 005773 315 -DVDELI--KLSL---------------------------------TKP----LRLSADPSAKRPSTLTEE--------- 345 (678)
Q Consensus 315 -~~~~l~--~~~~---------------------------------~~p----~~~~~~~~~~~~~~l~~~--------- 345 (678)
.+...+ ..++ +.+ ..+.+.........+++.
T Consensus 300 ~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl 379 (853)
T 2fsf_A 300 HHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKL 379 (853)
T ss_dssp ---------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEE
T ss_pred HHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhh
Confidence 221111 0001 001 011111111000111100
Q ss_pred ---------------------EEEEe--------------chhhhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHH
Q 005773 346 ---------------------VVRIR--------------RMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKI 388 (678)
Q Consensus 346 ---------------------~~~~~--------------~~~~~~~~~~l~~~~~~--~~~~~vLVF~~s~~~~~~l~~ 388 (678)
++.++ ......+...+...+.. ..+.++||||+|+..++.|+.
T Consensus 380 ~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~ 459 (853)
T 2fsf_A 380 AGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSN 459 (853)
T ss_dssp EEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHH
T ss_pred hcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHH
Confidence 00000 01233455555554432 346789999999999999999
Q ss_pred HHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCc-----------------------------
Q 005773 389 LFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGV----------------------------- 439 (678)
Q Consensus 389 ~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v----------------------------- 439 (678)
.|...|+.+..|||.+.+.++..+.+.|+.| .|+||||+|+||+||+..
T Consensus 460 ~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (853)
T 2fsf_A 460 ELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRH 537 (853)
T ss_dssp HHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhh
Confidence 9999999999999999888888888889888 599999999999999873
Q ss_pred --------cEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHH
Q 005773 440 --------QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480 (678)
Q Consensus 440 --------~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~ 480 (678)
.+||+|+.|.|...|+||+|||||.|.+|.+++|++..|..
T Consensus 538 ~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l 586 (853)
T 2fsf_A 538 DAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDAL 586 (853)
T ss_dssp HHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGG
T ss_pred hHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHH
Confidence 69999999999999999999999999999999999988743
No 32
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-42 Score=410.08 Aligned_cols=324 Identities=19% Similarity=0.240 Sum_probs=258.7
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 142 ~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
.++|. |+|+|.++++.++.|+++++++|||||||++|.++++..+. .+.++||++||++|+.|+++.+..+..
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~------~g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH------TTCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc------cCCeEEEECChHHHHHHHHHHHHHHhC
Confidence 34676 99999999999999999999999999999999999988773 246899999999999999999998754
Q ss_pred cCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCC
Q 005773 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPK 301 (678)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~ 301 (678)
.++.++|+.... ..++|+|+||++|..++.+. ...+.++++|||||||++.++++...+..++..++.
T Consensus 155 ----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~-~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~ 222 (1010)
T 2xgj_A 155 ----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRG-SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD 222 (1010)
T ss_dssp ----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHT-CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT
T ss_pred ----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcC-cchhhcCCEEEEechhhhcccchhHHHHHHHHhcCC
Confidence 678888876543 35799999999999988764 456889999999999999999999899999999999
Q ss_pred CccEEEEEeccChhH--HHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEe---------chh-----------------
Q 005773 302 RRQTMLFSATLTEDV--DELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIR---------RMR----------------- 353 (678)
Q Consensus 302 ~~q~il~SATl~~~~--~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~---------~~~----------------- 353 (678)
..|+|++|||+++.. ...+......+..+.... .++..+.+.++... ...
T Consensus 223 ~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~--~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (1010)
T 2xgj_A 223 KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN--FRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 300 (1010)
T ss_dssp TCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEEC--CCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--
T ss_pred CCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC--CCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh
Confidence 999999999998643 234443445555554332 23334444332210 000
Q ss_pred ------------------h--------hhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCc-----------
Q 005773 354 ------------------E--------VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALK----------- 396 (678)
Q Consensus 354 ------------------~--------~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~----------- 396 (678)
. ......+...+......++||||+++..++.++..|...++.
T Consensus 301 ~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~ 380 (1010)
T 2xgj_A 301 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKI 380 (1010)
T ss_dssp ----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHH
T ss_pred hcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 0 011112333333344568999999999999999988764432
Q ss_pred ----------------------------eeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEE----
Q 005773 397 ----------------------------AAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN---- 444 (678)
Q Consensus 397 ----------------------------~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~---- 444 (678)
++.+||+|++.+|..++..|++|.++|||||+++++|||+|++++||+
T Consensus 381 ~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~k 460 (1010)
T 2xgj_A 381 FNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRK 460 (1010)
T ss_dssp HHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEE
T ss_pred HHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcc
Confidence 788999999999999999999999999999999999999999999999
Q ss_pred cCC----CCChhHHHHHHhhcccCCC--ceEEEEEeeCC-cHHHHHHHH
Q 005773 445 YAC----PRDLTSYVHRVGRTARAGR--EGYAVTFVTDN-DRSLLKAIA 486 (678)
Q Consensus 445 ~d~----p~s~~~yiQr~GRagR~g~--~G~~i~l~~~~-d~~~l~~i~ 486 (678)
||. |.++..|+||+|||||.|. .|.|++++++. +...+..+.
T Consensus 461 fd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~ 509 (1010)
T 2xgj_A 461 WDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMV 509 (1010)
T ss_dssp ECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHH
T ss_pred cCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHH
Confidence 999 8999999999999999986 59999999876 566666654
No 33
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=4.4e-41 Score=380.07 Aligned_cols=327 Identities=20% Similarity=0.231 Sum_probs=253.4
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 142 ALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 142 ~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
.+|+ +|+++|..++|.++.|+ |+.++||+|||++|.+|++...+. +..|+||+||++||.|.++++..++.
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~------g~~v~VvTpTreLA~Qdae~m~~l~~ 177 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA------GNGVHIVTVNDYLAKRDSEWMGRVHR 177 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT------TSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh------CCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 4798 89999999999999998 999999999999999999754432 34699999999999999999999999
Q ss_pred cCCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccC-----ccCCCCeeEEEEeCCcccc-c---------
Q 005773 222 FTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLDDLAVLILDEADRLL-E--------- 285 (678)
Q Consensus 222 ~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~-----~~~l~~i~~lVvDEah~ll-~--------- 285 (678)
+.++++++++||.+...... ..++||+|+||++| .++|.... .+.++.+.++||||||+|+ +
T Consensus 178 ~lGLsv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiS 255 (922)
T 1nkt_A 178 FLGLQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIIS 255 (922)
T ss_dssp HTTCCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEE
T ss_pred hcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeec
Confidence 99999999999987654433 33689999999999 78887642 3567899999999999998 3
Q ss_pred ------CChHHHHHHHHHHCC---------CCccEE-----------------EEEeccCh---hHHHHHH--HhcC-C-
Q 005773 286 ------LGFSAEIHELVRLCP---------KRRQTM-----------------LFSATLTE---DVDELIK--LSLT-K- 326 (678)
Q Consensus 286 ------~gf~~~i~~i~~~~~---------~~~q~i-----------------l~SATl~~---~~~~l~~--~~~~-~- 326 (678)
.+|...+..++..++ +.+|++ +||||+++ .+...++ ..+. +
T Consensus 256 g~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~ 335 (922)
T 1nkt_A 256 GPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDK 335 (922)
T ss_dssp EECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTT
T ss_pred CCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccc
Confidence 358888999999998 788998 99999875 3333221 1221 1
Q ss_pred ------CeEEecCCCCCC------------------------C-----CCcee---------------------------
Q 005773 327 ------PLRLSADPSAKR------------------------P-----STLTE--------------------------- 344 (678)
Q Consensus 327 ------p~~~~~~~~~~~------------------------~-----~~l~~--------------------------- 344 (678)
+..+.++....+ + ..+++
T Consensus 336 dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~i 415 (922)
T 1nkt_A 336 DYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEI 415 (922)
T ss_dssp TEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHH
T ss_pred ceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHH
Confidence 111111110000 0 00000
Q ss_pred ---EEEEEe--------------chhhhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCC
Q 005773 345 ---EVVRIR--------------RMREVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405 (678)
Q Consensus 345 ---~~~~~~--------------~~~~~~~~~~l~~~~~~--~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~ 405 (678)
.++.++ ......+...+...+.. ..+.++||||+|+..++.|+..|...|+.+..|||.+.
T Consensus 416 Y~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~ 495 (922)
T 1nkt_A 416 YKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH 495 (922)
T ss_dssp HCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH
T ss_pred hCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChh
Confidence 000000 01123344444444432 34678999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCccEEEEcccccccCCCCCc----------------------------------------------
Q 005773 406 QAQRLEALELFRKQHVDFLIATDVAARGLDIIGV---------------------------------------------- 439 (678)
Q Consensus 406 ~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v---------------------------------------------- 439 (678)
+.++..+.+.|+.| .|+|||++|+||+||+.+
T Consensus 496 ~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (922)
T 1nkt_A 496 EQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKE 573 (922)
T ss_dssp HHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhH
Confidence 88887777888877 599999999999999975
Q ss_pred ------cEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHH
Q 005773 440 ------QTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (678)
Q Consensus 440 ------~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~ 481 (678)
.+||+|+.|.|...|.||+|||||.|.+|.+++|++..|..+
T Consensus 574 V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 574 VIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp HHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred HHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 599999999999999999999999999999999999887644
No 34
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.9e-42 Score=378.77 Aligned_cols=325 Identities=21% Similarity=0.261 Sum_probs=247.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (678)
.|+|+|.++++.++.+ ++++++|||+|||++++++++..+.. .+.++|||+|+++|+.||++.+.++......+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-----CCCeEEEEECCHHHHHHHHHHHHHHhCcchhh
Confidence 5999999999999999 99999999999999999999887752 24579999999999999999999887555568
Q ss_pred eEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEE
Q 005773 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (678)
Q Consensus 227 v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~i 306 (678)
+..++|+........ +...++|+|+||+.|...+... .+.+.++++|||||||++.+......+...+....+..+++
T Consensus 83 v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~-~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 83 IVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAG-RISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp EEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTT-SCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred eEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcC-CcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEE
Confidence 888888877654333 3346799999999999988764 46688999999999999987655555555666566788999
Q ss_pred EEEeccChh---HHHHHHHhcCCCeEEecCCCCCCCC---CceeEEEEEe--ch--------------------------
Q 005773 307 LFSATLTED---VDELIKLSLTKPLRLSADPSAKRPS---TLTEEVVRIR--RM-------------------------- 352 (678)
Q Consensus 307 l~SATl~~~---~~~l~~~~~~~p~~~~~~~~~~~~~---~l~~~~~~~~--~~-------------------------- 352 (678)
++|||+... +..+.......+..+.......... .......... ..
T Consensus 161 ~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (494)
T 1wp9_A 161 GLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLE 240 (494)
T ss_dssp EEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred EEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999844 3333333222221111110000000 0000000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 005773 353 -------------------------------------------------------------------------------- 352 (678)
Q Consensus 353 -------------------------------------------------------------------------------- 352 (678)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (494)
T 1wp9_A 241 SSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIF 320 (494)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhh
Confidence
Q ss_pred -------------------hhhhHHHHHHHHhhc----cCCceEEEEeccHHHHHHHHHHHhhcCCceeeccC-------
Q 005773 353 -------------------REVNQEAVLLSLCSK----TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG------- 402 (678)
Q Consensus 353 -------------------~~~~~~~~l~~~~~~----~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg------- 402 (678)
....+...+..++.. ..+.++||||+++..+..+..+|...++.+..+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~ 400 (494)
T 1wp9_A 321 SDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEND 400 (494)
T ss_dssp TSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC---
T ss_pred hhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccccccc
Confidence 001122223333333 46789999999999999999999999999999999
Q ss_pred -CCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHH
Q 005773 403 -NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS 480 (678)
Q Consensus 403 -~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~ 480 (678)
+|+..+|..+++.|++|..+|||||+++++|||+|++++||+|++|+|+..|+||+||+||.|+ |.++.|+++++..
T Consensus 401 ~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 401 RGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp ----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred ccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997 9999999998643
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.9e-41 Score=402.05 Aligned_cols=326 Identities=17% Similarity=0.208 Sum_probs=252.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
++|. |+++|.++|+.++.|+|+++++|||||||++|+++++..+. .++++||++||++|+.|+++.+.++.
T Consensus 36 ~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~------~g~~vlvl~PtraLa~Q~~~~l~~~~-- 106 (997)
T 4a4z_A 36 WPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR------NMTKTIYTSPIKALSNQKFRDFKETF-- 106 (997)
T ss_dssp CSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH------TTCEEEEEESCGGGHHHHHHHHHTTC--
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHHHHHc--
Confidence 4565 89999999999999999999999999999999998887653 35689999999999999999988753
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCC
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~ 302 (678)
.++.++.++|+... ...++|+|+||++|..++... ...+.++++|||||||++.+++|...+..++..++..
T Consensus 107 ~~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~ 178 (997)
T 4a4z_A 107 DDVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRG-ADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH 178 (997)
T ss_dssp --CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHT-CSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTT
T ss_pred CCCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhC-chhhcCCCEEEEECcccccccchHHHHHHHHHhcccC
Confidence 37888999988653 345799999999999988764 4557899999999999999999999999999999999
Q ss_pred ccEEEEEeccChhH--HHHHHHhcCCCeEEecCCCCCCCCCceeEEEE-------Eech---------------------
Q 005773 303 RQTMLFSATLTEDV--DELIKLSLTKPLRLSADPSAKRPSTLTEEVVR-------IRRM--------------------- 352 (678)
Q Consensus 303 ~q~il~SATl~~~~--~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~-------~~~~--------------------- 352 (678)
.|+|++|||+++.. ..++......++.+.. ...++..+.+.+.. +...
T Consensus 179 v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~--~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (997)
T 4a4z_A 179 VKFILLSATVPNTYEFANWIGRTKQKNIYVIS--TPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAK 256 (997)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTCCEEEEE--CSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----
T ss_pred CCEEEEcCCCCChHHHHHHHhcccCCceEEEe--cCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccc
Confidence 99999999998654 2222222223333322 11223333322211 0000
Q ss_pred --------------------------------------------------------------hhhhHHHHHHHHhhccCC
Q 005773 353 --------------------------------------------------------------REVNQEAVLLSLCSKTFT 370 (678)
Q Consensus 353 --------------------------------------------------------------~~~~~~~~l~~~~~~~~~ 370 (678)
........+...+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~ 336 (997)
T 4a4z_A 257 GAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKREL 336 (997)
T ss_dssp ------------------------------------------------------------CCCCTTHHHHHHHHHHHTTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCC
Confidence 001112234444555556
Q ss_pred ceEEEEeccHHHHHHHHHHHhhcCC---------------------------------------ceeeccCCCCHHHHHH
Q 005773 371 SKVIIFSGTKQAAHRLKILFGLAAL---------------------------------------KAAELHGNLTQAQRLE 411 (678)
Q Consensus 371 ~~vLVF~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~lhg~l~~~~R~~ 411 (678)
.++||||+|+..++.++..|...++ .+..+||+|++.+|..
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~ 416 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKEL 416 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHH
Confidence 7999999999999999999976655 5789999999999999
Q ss_pred HHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCC---------ChhHHHHHHhhcccCC--CceEEEEEee--CCc
Q 005773 412 ALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPR---------DLTSYVHRVGRTARAG--REGYAVTFVT--DND 478 (678)
Q Consensus 412 ~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~---------s~~~yiQr~GRagR~g--~~G~~i~l~~--~~d 478 (678)
++..|++|.++|||||+++++|||+|+ .+||+++.|. ++..|+||+|||||.| ..|.|++++. ..+
T Consensus 417 v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~ 495 (997)
T 4a4z_A 417 IEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLS 495 (997)
T ss_dssp HHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCC
T ss_pred HHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcch
Confidence 999999999999999999999999999 6666655555 9999999999999988 6789999883 446
Q ss_pred HHHHHHHHHH
Q 005773 479 RSLLKAIAKR 488 (678)
Q Consensus 479 ~~~l~~i~~~ 488 (678)
...++.+...
T Consensus 496 ~~~~~~~i~~ 505 (997)
T 4a4z_A 496 IATFKEVTMG 505 (997)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHhcC
Confidence 6777766443
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=3.9e-43 Score=409.21 Aligned_cols=326 Identities=22% Similarity=0.256 Sum_probs=225.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHH-HHHHHHHhhcCCc
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV-HSMIEKIAQFTDI 225 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~-~~~~~~l~~~~~~ 225 (678)
.|+|+|.++++.++.|+++|+++|||+|||++|++|+++.+........++++|||+||++|+.|+ ++.+..++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 599999999999999999999999999999999999998876543222235799999999999999 9999998765 48
Q ss_pred eeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhc-----cCccCCCCeeEEEEeCCcccccCC-hHHHHHHHHHH-
Q 005773 226 RCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRN-----SMSVDLDDLAVLILDEADRLLELG-FSAEIHELVRL- 298 (678)
Q Consensus 226 ~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~-----~~~~~l~~i~~lVvDEah~ll~~g-f~~~i~~i~~~- 298 (678)
++..++|+.........+...++|+|+||++|...+.. ...+.+..+++|||||||++...+ +...+..++..
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 89999998876665566667899999999999988842 224567889999999999986533 22222222221
Q ss_pred ------------CCCCccEEEEEeccChh-----------HHHHHHHhcCCCeEEecCC------CCCCCCCceeEEEEE
Q 005773 299 ------------CPKRRQTMLFSATLTED-----------VDELIKLSLTKPLRLSADP------SAKRPSTLTEEVVRI 349 (678)
Q Consensus 299 ------------~~~~~q~il~SATl~~~-----------~~~l~~~~~~~p~~~~~~~------~~~~~~~l~~~~~~~ 349 (678)
..+.+|+|++|||++.. +..+....-...+...... ....+ . ..+..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p-~--~~~~~~ 242 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEP-C--KKFAIA 242 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCC-E--EEEEEE
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCC-c--eEEEEc
Confidence 12567999999999862 2222222111000000000 00000 0 000000
Q ss_pred echh----------------------------------------------------------------------------
Q 005773 350 RRMR---------------------------------------------------------------------------- 353 (678)
Q Consensus 350 ~~~~---------------------------------------------------------------------------- 353 (678)
....
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000
Q ss_pred --------------------------------------------------------hhhH----HHHHHHHhhccC-Cce
Q 005773 354 --------------------------------------------------------EVNQ----EAVLLSLCSKTF-TSK 372 (678)
Q Consensus 354 --------------------------------------------------------~~~~----~~~l~~~~~~~~-~~~ 372 (678)
...+ ...+...+.... +++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 0000 001111112222 689
Q ss_pred EEEEeccHHHHHHHHHHHhhc------CCceeeccCC--------CCHHHHHHHHHHHhcCCccEEEEcccccccCCCCC
Q 005773 373 VIIFSGTKQAAHRLKILFGLA------ALKAAELHGN--------LTQAQRLEALELFRKQHVDFLIATDVAARGLDIIG 438 (678)
Q Consensus 373 vLVF~~s~~~~~~l~~~L~~~------~~~~~~lhg~--------l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~ 438 (678)
+||||+++..++.++.+|... |+.+..+||+ |++.+|..+++.|++|+.+|||||+++++|||+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCc
Q 005773 439 VQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478 (678)
Q Consensus 439 v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d 478 (678)
|++||+||+|+|+..|+||+||+||.| +.+++++...+
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGS 520 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSS
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCc
Confidence 999999999999999999999976644 44444444443
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.4e-40 Score=384.47 Aligned_cols=326 Identities=20% Similarity=0.217 Sum_probs=241.2
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHH
Q 005773 134 RPLLRACEALGYSKPTPIQAACIPLALTG------RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (678)
Q Consensus 134 ~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g------~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~ 207 (678)
..+...+..++| .||++|.++++.++.+ .+++++|+||||||++|++|+++.+.. +.+++|++||++
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------g~qvlvlaPtr~ 428 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------GFQTAFMVPTSI 428 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------TSCEEEECSCHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------CCeEEEEeCcHH
Confidence 455666688999 7999999999999875 599999999999999999999988743 457999999999
Q ss_pred HHHHHHHHHHHHhhcCCceeEEEecCCChHHHHH---Hhc-CCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccc
Q 005773 208 LAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET---ALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (678)
Q Consensus 208 La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~---~l~-~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (678)
||.|+++.+.+++...++++..++|+.+...... .+. +.++|+|+||+.|.+ .+.+.++++|||||+|++
T Consensus 429 La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 429 LAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccchh
Confidence 9999999999998888999999999988765432 233 458999999998754 355789999999999996
Q ss_pred ccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHH
Q 005773 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLS 363 (678)
Q Consensus 284 l~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 363 (678)
. +... ..+......+|+++||||+.+...............+...+.. +. .+...+ + ........+..
T Consensus 503 g---~~qr--~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~-r~-~i~~~~--~---~~~~~~~l~~~ 570 (780)
T 1gm5_A 503 G---VKQR--EALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG-RK-EVQTML--V---PMDRVNEVYEF 570 (780)
T ss_dssp ----------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSS-CC-CCEECC--C---CSSTHHHHHHH
T ss_pred h---HHHH--HHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCC-Cc-ceEEEE--e---ccchHHHHHHH
Confidence 3 2211 1122223468999999999876554433211111111111111 11 111111 1 11111222222
Q ss_pred Hhh-ccCCceEEEEeccH--------HHHHHHHHHHhh---cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccccc
Q 005773 364 LCS-KTFTSKVIIFSGTK--------QAAHRLKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431 (678)
Q Consensus 364 ~~~-~~~~~~vLVF~~s~--------~~~~~l~~~L~~---~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~ 431 (678)
+.. ...+.+++|||++. ..+..++..|.. .++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 571 i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 571 VRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 221 23467899999965 446788888877 478999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEcCCCC-ChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHH
Q 005773 432 RGLDIIGVQTVINYACPR-DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKA 484 (678)
Q Consensus 432 ~GlDi~~v~~VI~~d~p~-s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~ 484 (678)
+|+|+|++++||+|++|. +...|.||+||+||.|++|.|++++++.+....+.
T Consensus 651 ~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~r 704 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMER 704 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHH
T ss_pred ccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHH
Confidence 999999999999999996 78899999999999999999999998655443333
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.1e-39 Score=399.31 Aligned_cols=346 Identities=17% Similarity=0.201 Sum_probs=263.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 005773 132 LSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (678)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g-~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~ 210 (678)
|..+..+++...+|..|+|+|.++++.++.+ +|++++||||||||++|.+|+++.+...+ +.++|||+||++||.
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~----~~kavyi~P~raLa~ 986 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS----EGRCVYITPMEALAE 986 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT----TCCEEEECSCHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC----CCEEEEEcChHHHHH
Confidence 5567788888889999999999999999865 68999999999999999999999987653 347999999999999
Q ss_pred HHHHHHHH-HhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCc-cCCCCeeEEEEeCCcccccCCh
Q 005773 211 QVHSMIEK-IAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-VDLDDLAVLILDEADRLLELGF 288 (678)
Q Consensus 211 Q~~~~~~~-l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~-~~l~~i~~lVvDEah~ll~~gf 288 (678)
|+++.+.+ +....+++|+.++|+...... ....++|+||||+++..++++... ..++++++|||||+|.|.+..
T Consensus 987 q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~r- 1062 (1724)
T 4f92_B 987 QVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGEN- 1062 (1724)
T ss_dssp HHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTT-
T ss_pred HHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCC-
Confidence 99998875 555578999999987654333 234579999999999777765322 247889999999999887643
Q ss_pred HHHHH-------HHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhH----
Q 005773 289 SAEIH-------ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQ---- 357 (678)
Q Consensus 289 ~~~i~-------~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---- 357 (678)
...+. .+....+++.|+|++|||+++ ..++..+....+..+.......+|..+...+..+........
T Consensus 1063 g~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~ 1141 (1724)
T 4f92_B 1063 GPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSM 1141 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTT
T ss_pred CccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhh
Confidence 33332 233456788999999999985 444444433333222222344466666665554433222111
Q ss_pred -HHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhh----------------------------------cCCceeeccC
Q 005773 358 -EAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL----------------------------------AALKAAELHG 402 (678)
Q Consensus 358 -~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~----------------------------------~~~~~~~lhg 402 (678)
......+.....++++||||+|+..++.++..|.. ....++.+||
T Consensus 1142 ~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHa 1221 (1724)
T 4f92_B 1142 AKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHE 1221 (1724)
T ss_dssp HHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECT
T ss_pred cchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECC
Confidence 11222233445578999999999999888765521 1245889999
Q ss_pred CCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEE----------cCCCCChhHHHHHHhhcccCCC--ceEE
Q 005773 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----------YACPRDLTSYVHRVGRTARAGR--EGYA 470 (678)
Q Consensus 403 ~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~----------~d~p~s~~~yiQr~GRagR~g~--~G~~ 470 (678)
+|++.+|..+.+.|++|.++|||||+++++|||+|.+.+||. ...|.++.+|+||+|||||.|. .|.|
T Consensus 1222 gL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~a 1301 (1724)
T 4f92_B 1222 GLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRC 1301 (1724)
T ss_dssp TSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEE
Confidence 999999999999999999999999999999999999999983 2346789999999999999986 7999
Q ss_pred EEEeeCCcHHHHHHHH
Q 005773 471 VTFVTDNDRSLLKAIA 486 (678)
Q Consensus 471 i~l~~~~d~~~l~~i~ 486 (678)
++++.+.+...++.+.
T Consensus 1302 vll~~~~~~~~~~~ll 1317 (1724)
T 4f92_B 1302 VIMCQGSKKDFFKKFL 1317 (1724)
T ss_dssp EEEEEGGGHHHHHHHT
T ss_pred EEEecchHHHHHHHHh
Confidence 9999998887776653
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.4e-38 Score=384.23 Aligned_cols=323 Identities=20% Similarity=0.207 Sum_probs=250.4
Q ss_pred CCCCHHHHHHH-HHcCCCCCcHHHHHHHHHHhc----CC--CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEE
Q 005773 130 LNLSRPLLRAC-EALGYSKPTPIQAACIPLALT----GR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (678)
Q Consensus 130 l~l~~~l~~~l-~~~g~~~~~~iQ~~~i~~ll~----g~--dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl 202 (678)
++++....+.+ ..++|. +||+|.++|+.++. |+ |++++++||||||++|+++++..+. .+.+++|+
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------~g~~vlvl 658 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------NHKQVAVL 658 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------TTCEEEEE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH------hCCeEEEE
Confidence 34555555555 457886 79999999999987 66 9999999999999999888887653 24589999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHH---Hhc-CCCCEEEECchHHHHHHhccCccCCCCeeEEEEe
Q 005773 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET---ALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (678)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~---~l~-~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvD 278 (678)
+||++||.|+++.+.++....++++..+++..+...... .+. +.++|+|+||+.|. . .+.+.++++||||
T Consensus 659 vPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~--~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 659 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----S--DVKFKDLGLLIVD 732 (1151)
T ss_dssp CSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----S--CCCCSSEEEEEEE
T ss_pred echHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----C--CccccccceEEEe
Confidence 999999999999999887777888998888776554432 233 45899999997663 2 4567899999999
Q ss_pred CCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHH
Q 005773 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQE 358 (678)
Q Consensus 279 Eah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 358 (678)
|||++ | .....++..++...++++||||+.+....+....+.++..+...+.. + ..+...+.... ......
T Consensus 733 EaH~~---g--~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~-r-~~i~~~~~~~~--~~~i~~ 803 (1151)
T 2eyq_A 733 EEHRF---G--VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR-R-LAVKTFVREYD--SMVVRE 803 (1151)
T ss_dssp SGGGS---C--HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCB-C-BCEEEEEEECC--HHHHHH
T ss_pred chHhc---C--hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCC-c-cccEEEEecCC--HHHHHH
Confidence 99994 2 23345556666788999999999887776666555544333221111 1 11222222111 111111
Q ss_pred HHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCC
Q 005773 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDI 436 (678)
Q Consensus 359 ~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi 436 (678)
..+.. ...+++++|||+++..++.++..|... +..+..+||+|++.+|..++..|++|+.+|||||+++++|||+
T Consensus 804 ~il~~---l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi 880 (1151)
T 2eyq_A 804 AILRE---ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 880 (1151)
T ss_dssp HHHHH---HTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHH---HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc
Confidence 11211 224689999999999999999999887 8899999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCC-CCChhHHHHHHhhcccCCCceEEEEEeeCC
Q 005773 437 IGVQTVINYAC-PRDLTSYVHRVGRTARAGREGYAVTFVTDN 477 (678)
Q Consensus 437 ~~v~~VI~~d~-p~s~~~yiQr~GRagR~g~~G~~i~l~~~~ 477 (678)
|++++||+++. ++++.+|+||+||+||.|+.|.|++++.+.
T Consensus 881 p~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 881 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999999998 579999999999999999999999998764
No 40
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.7e-41 Score=382.49 Aligned_cols=314 Identities=15% Similarity=0.143 Sum_probs=233.3
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHH
Q 005773 130 LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELA 209 (678)
Q Consensus 130 l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La 209 (678)
+++++.+.+++... ...++|+|+.++|.++.|+|++++++||||||++|++|+++.+... ++++|||+|||+||
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-----~~~vLvl~PtreLa 228 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-----RLRTLILAPTRVVA 228 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-----CCeEEEEcChHHHH
Confidence 56677766666543 4788999988999999999999999999999999999999988753 45799999999999
Q ss_pred HHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChH
Q 005773 210 VQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS 289 (678)
Q Consensus 210 ~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~ 289 (678)
.|+++.+. +..+....+... .....+..+.++|.+.|...+... ..+.++++|||||||++ +.+|.
T Consensus 229 ~Qi~~~l~------~~~v~~~~~~l~-----~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~ 294 (618)
T 2whx_A 229 AEMEEALR------GLPIRYQTPAVK-----SDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSV 294 (618)
T ss_dssp HHHHHHTT------TSCEEECCTTSS-----CCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCC-SHHHH
T ss_pred HHHHHHhc------CCceeEecccce-----eccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCC-CccHH
Confidence 99998765 333332111100 001122357788888887766653 45889999999999998 66677
Q ss_pred HHHHHHHHHCC-CCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhcc
Q 005773 290 AEIHELVRLCP-KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKT 368 (678)
Q Consensus 290 ~~i~~i~~~~~-~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 368 (678)
..+..++..++ ..+|+|+||||++..+..+.. .++..+.+.... +. .... ..+..+..
T Consensus 295 ~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~--~~-----------~~~~---~ll~~l~~-- 353 (618)
T 2whx_A 295 AARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI--PE-----------RSWN---TGFDWITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC--CS-----------SCCS---SSCHHHHH--
T ss_pred HHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC--CH-----------HHHH---HHHHHHHh--
Confidence 77777777765 679999999999876442221 122222221110 00 0000 01111112
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEE------
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTV------ 442 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~V------ 442 (678)
.++++||||+|+..++.++..|...++.+..+||. +|.++++.|++|+.+|||||+++++|||++ |++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 26799999999999999999999999999999984 788899999999999999999999999997 9988
Q ss_pred --------------EEcCCCCChhHHHHHHhhcccCCC-ceEEEEEee---CCcHHHHHHHHHHh
Q 005773 443 --------------INYACPRDLTSYVHRVGRTARAGR-EGYAVTFVT---DNDRSLLKAIAKRA 489 (678)
Q Consensus 443 --------------I~~d~p~s~~~yiQr~GRagR~g~-~G~~i~l~~---~~d~~~l~~i~~~~ 489 (678)
|+|++|.+..+|+||+|||||.|. +|.|++|++ +.+...++.++..+
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 788889999999999999999864 999999998 77777777776653
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=6.6e-39 Score=359.76 Aligned_cols=312 Identities=15% Similarity=0.129 Sum_probs=234.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (678)
.|+|+|.++++.++.+++++++++||||||++|+++++..+... .+++|||+||++|+.|+++.+..+..+.+..
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-----~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~ 187 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-----EGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-----SSEEEEEESSHHHHHHHHHHHHHTTSSCGGG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-----CCeEEEEECcHHHHHHHHHHHHHhhcCCccc
Confidence 69999999999999999999999999999999999888776432 3489999999999999999999987777788
Q ss_pred eEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEE
Q 005773 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (678)
Q Consensus 227 v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~i 306 (678)
+..++|+.+...+ +...++|+|+||+.|... ....+.++++|||||||++.. ..+..++..++...+++
T Consensus 188 v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 188 IKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKF 256 (510)
T ss_dssp EEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEE
T ss_pred eEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEE
Confidence 8888888765543 566789999999987542 234567899999999999876 44667777888888999
Q ss_pred EEEeccChhHHHHHH-HhcCCCeEEecCCCC------CCCCCceeEEEEEech----------hh--------hhHHHHH
Q 005773 307 LFSATLTEDVDELIK-LSLTKPLRLSADPSA------KRPSTLTEEVVRIRRM----------RE--------VNQEAVL 361 (678)
Q Consensus 307 l~SATl~~~~~~l~~-~~~~~p~~~~~~~~~------~~~~~l~~~~~~~~~~----------~~--------~~~~~~l 361 (678)
+||||++.....+.. ..+..+..+...... ..+..+....+..... .. ..+...+
T Consensus 257 ~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (510)
T 2oca_A 257 GLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWI 336 (510)
T ss_dssp EEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHH
T ss_pred EEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHH
Confidence 999999765433221 112233333222110 0111111111111100 00 0011122
Q ss_pred HHHhhc---cCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEc-ccccccCCCC
Q 005773 362 LSLCSK---TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIAT-DVAARGLDII 437 (678)
Q Consensus 362 ~~~~~~---~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT-~~~~~GlDi~ 437 (678)
..++.. ..+.++||||+ ...+..++..|...+..+..+||++++.+|..+++.|++|+.+||||| +++++|+|+|
T Consensus 337 ~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip 415 (510)
T 2oca_A 337 AKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVK 415 (510)
T ss_dssp HHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCC
T ss_pred HHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccc
Confidence 222222 13456666666 888888999999988899999999999999999999999999999999 9999999999
Q ss_pred CccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEee
Q 005773 438 GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475 (678)
Q Consensus 438 ~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~ 475 (678)
++++||++++|+++..|+||+||+||.|+.|.++++++
T Consensus 416 ~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 416 NLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999999997774555544
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=8.2e-39 Score=396.65 Aligned_cols=338 Identities=18% Similarity=0.241 Sum_probs=255.3
Q ss_pred CCCCCcHHHHHHHHHHhc-CCCEEEEcCCCchhhhhhhhchhHHHhcCCC-----CCCCeEEEEEcCcHHHHHHHHHHHH
Q 005773 144 GYSKPTPIQAACIPLALT-GRDICGSAITGSGKTAAFALPTLERLLYRPK-----RIPAIRVLILTPTRELAVQVHSMIE 217 (678)
Q Consensus 144 g~~~~~~iQ~~~i~~ll~-g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~-----~~~~~~vLIl~Ptr~La~Q~~~~~~ 217 (678)
||..|+++|.+++|.++. ++|++++||||||||++|.+++++.+..... ...+.++|||+|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999999885 6899999999999999999999999975322 1346789999999999999999999
Q ss_pred HHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCc-cCCCCeeEEEEeCCcccccCChHHHHHHH-
Q 005773 218 KIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-VDLDDLAVLILDEADRLLELGFSAEIHEL- 295 (678)
Q Consensus 218 ~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~-~~l~~i~~lVvDEah~ll~~gf~~~i~~i- 295 (678)
+.....+++|..++|+.+.... ....++|+||||+++..+++.... ..++.+++|||||+|.+-+ .....+..+
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8888889999999998765432 234689999999998655554321 2378899999999997754 333333322
Q ss_pred ------HHHCCCCccEEEEEeccChhHHHHHHHhcCCC-eEEecCCCCCCCCCceeEEEEEechhhhhHHHH-----HHH
Q 005773 296 ------VRLCPKRRQTMLFSATLTEDVDELIKLSLTKP-LRLSADPSAKRPSTLTEEVVRIRRMREVNQEAV-----LLS 363 (678)
Q Consensus 296 ------~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----l~~ 363 (678)
....+...|+|++|||+++ ..+++...-..+ ..+.......+|..+.+.++.+........... ...
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHH
Confidence 3456788999999999985 444544332222 112222234467677776655543322222111 122
Q ss_pred HhhccCCceEEEEeccHHHHHHHHHHHhh-------------------------------------cCCceeeccCCCCH
Q 005773 364 LCSKTFTSKVIIFSGTKQAAHRLKILFGL-------------------------------------AALKAAELHGNLTQ 406 (678)
Q Consensus 364 ~~~~~~~~~vLVF~~s~~~~~~l~~~L~~-------------------------------------~~~~~~~lhg~l~~ 406 (678)
+.....++++||||+|+..++.++..|.. ....++++||+|++
T Consensus 311 v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~ 390 (1724)
T 4f92_B 311 IMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 390 (1724)
T ss_dssp HTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCT
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCH
Confidence 23344567899999999888888776642 12357899999999
Q ss_pred HHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEE----cCC------CCChhHHHHHHhhcccCC--CceEEEEEe
Q 005773 407 AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN----YAC------PRDLTSYVHRVGRTARAG--REGYAVTFV 474 (678)
Q Consensus 407 ~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~----~d~------p~s~~~yiQr~GRagR~g--~~G~~i~l~ 474 (678)
.+|..+.+.|++|.++|||||+++++|+|+|.+++||. |+. |.++.+|+||+|||||.| ..|.+++++
T Consensus 391 ~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~ 470 (1724)
T 4f92_B 391 VDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILIT 470 (1724)
T ss_dssp HHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEe
Confidence 99999999999999999999999999999999999985 543 458999999999999977 479999999
Q ss_pred eCCcHHHHHHHH
Q 005773 475 TDNDRSLLKAIA 486 (678)
Q Consensus 475 ~~~d~~~l~~i~ 486 (678)
+..+......+.
T Consensus 471 ~~~~~~~~~~ll 482 (1724)
T 4f92_B 471 SHGELQYYLSLL 482 (1724)
T ss_dssp ESTTCCHHHHHT
T ss_pred cchhHHHHHHHH
Confidence 988866655543
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=9.1e-40 Score=360.09 Aligned_cols=287 Identities=16% Similarity=0.193 Sum_probs=215.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCCE-EEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 144 GYSKPTPIQAACIPLALTGRDI-CGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 144 g~~~~~~iQ~~~i~~ll~g~dv-l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
|+.+|+|+|+ +||.++.++++ ++++|||||||++|++|++..+... ++++||++||++||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-----~~~~lvl~Ptr~La~Q~~~~l~----- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-----RLRTLILAPTRVVAAEMEEALR----- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTT-----
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-----CCcEEEECCCHHHHHHHHHHhc-----
Confidence 6889999986 79999999887 8999999999999999999887653 4579999999999999988764
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHH-HHCCC
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV-RLCPK 301 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~-~~~~~ 301 (678)
++.+....+.... ....+..|.++|++.|..++.+. ..+.++++|||||||++ +.++...+..+. ...++
T Consensus 70 -g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~ 140 (451)
T 2jlq_A 70 -GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMG 140 (451)
T ss_dssp -TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTT
T ss_pred -Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCC
Confidence 3344332222211 12234579999999998888763 56889999999999987 433333222222 23456
Q ss_pred CccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHH
Q 005773 302 RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQ 381 (678)
Q Consensus 302 ~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~ 381 (678)
.+|+++||||++..+... ...++..+..... .+.. . + . . +...+.. ..+++||||+++.
T Consensus 141 ~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~--~p~~--~-~------~--~----~~~~l~~-~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 141 EAAAIFMTATPPGSTDPF---PQSNSPIEDIERE--IPER--S-W------N--T----GFDWITD-YQGKTVWFVPSIK 199 (451)
T ss_dssp SCEEEEECSSCTTCCCSS---CCCSSCEEEEECC--CCSS--C-C------S--S----SCHHHHH-CCSCEEEECSSHH
T ss_pred CceEEEEccCCCccchhh---hcCCCceEecCcc--CCch--h-h------H--H----HHHHHHh-CCCCEEEEcCCHH
Confidence 799999999998744321 1222222222100 0100 0 0 0 0 0111111 3579999999999
Q ss_pred HHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcC---------------
Q 005773 382 AAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYA--------------- 446 (678)
Q Consensus 382 ~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d--------------- 446 (678)
.++.++..|...++.+..+||.+. ..+++.|++|+.+|||||+++++|||+|+ ++||+||
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred -----CCCChhHHHHHHhhcccCCC-ceEEEEEeeC
Q 005773 447 -----CPRDLTSYVHRVGRTARAGR-EGYAVTFVTD 476 (678)
Q Consensus 447 -----~p~s~~~yiQr~GRagR~g~-~G~~i~l~~~ 476 (678)
.|.+..+|+||+|||||.|. .|.+++|+..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999997 8999888754
No 44
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.6e-38 Score=369.71 Aligned_cols=338 Identities=18% Similarity=0.192 Sum_probs=244.8
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEE
Q 005773 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG-RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g-~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLI 201 (678)
+..+|.++++++.+.+.+...+ ..|+++|+.+|+.++.+ ++++++||||||||+ ++|++-..... ....+.+++|
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~-~~~~g~~ilv 145 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM-PHLENTQVAC 145 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC-GGGGTCEEEE
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc-ccCCCceEEe
Confidence 4568999999999999999988 77999999999988865 579999999999998 45555221111 1112457999
Q ss_pred EcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCc
Q 005773 202 LTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (678)
Q Consensus 202 l~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah 281 (678)
++|+++|+.|+++.+.... +..++..+|..... .......++|+|+|||+|.+.+... ..+.++++|||||+|
T Consensus 146 l~P~r~La~q~~~~l~~~~---~~~v~~~vG~~i~~--~~~~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~~lIlDEah 218 (773)
T 2xau_A 146 TQPRRVAAMSVAQRVAEEM---DVKLGEEVGYSIRF--ENKTSNKTILKYMTDGMLLREAMED--HDLSRYSCIILDEAH 218 (773)
T ss_dssp EESCHHHHHHHHHHHHHHT---TCCBTTTEEEEETT--EEECCTTCSEEEEEHHHHHHHHHHS--TTCTTEEEEEECSGG
T ss_pred cCchHHHHHHHHHHHHHHh---CCchhheecceecc--ccccCCCCCEEEECHHHHHHHHhhC--ccccCCCEEEecCcc
Confidence 9999999999987665432 33333233321000 0012346789999999999887763 568899999999999
Q ss_pred c-cccCCh-HHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechh-hhhHH
Q 005773 282 R-LLELGF-SAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR-EVNQE 358 (678)
Q Consensus 282 ~-ll~~gf-~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 358 (678)
. .++..+ ...+..+.... +..|+|+||||++.+ .+.. ++..+..+.+... ...+.+.+....... .....
T Consensus 219 ~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~--~l~~-~~~~~~vi~v~gr---~~pv~~~~~~~~~~~~~~~~l 291 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE--KFQR-YFNDAPLLAVPGR---TYPVELYYTPEFQRDYLDSAI 291 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH--HHHH-HTTSCCEEECCCC---CCCEEEECCSSCCSCHHHHHH
T ss_pred ccccchHHHHHHHHHHHHhC-CCceEEEEeccccHH--HHHH-HhcCCCcccccCc---ccceEEEEecCCchhHHHHHH
Confidence 5 555332 23344444444 478999999999643 3333 4444333433221 122222221111100 01112
Q ss_pred HHHHHHhhccCCceEEEEeccHHHHHHHHHHHhh-----------cCCceeeccCCCCHHHHHHHHHHHh-----cCCcc
Q 005773 359 AVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL-----------AALKAAELHGNLTQAQRLEALELFR-----KQHVD 422 (678)
Q Consensus 359 ~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~-----------~~~~~~~lhg~l~~~~R~~~l~~F~-----~g~~~ 422 (678)
..+..++....++++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|+ +|..+
T Consensus 292 ~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k 371 (773)
T 2xau_A 292 RTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK 371 (773)
T ss_dssp HHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE
T ss_pred HHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE
Confidence 2333344444678999999999999999999874 5788999999999999999999999 99999
Q ss_pred EEEEcccccccCCCCCccEEEEcCC------------------CCChhHHHHHHhhcccCCCceEEEEEeeCCcH
Q 005773 423 FLIATDVAARGLDIIGVQTVINYAC------------------PRDLTSYVHRVGRTARAGREGYAVTFVTDNDR 479 (678)
Q Consensus 423 vLvaT~~~~~GlDi~~v~~VI~~d~------------------p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~ 479 (678)
|||||+++++|||||+|++||++++ |.+..+|+||+|||||. ++|.||+|+++.+.
T Consensus 372 VlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 372 VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999999999999999999999888 88999999999999998 79999999987554
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.7e-38 Score=350.15 Aligned_cols=296 Identities=19% Similarity=0.236 Sum_probs=220.1
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (678)
.|+|+|.++++.++.+++++++++||+|||++|++++... +.++|||+||++|+.||++.+.+| ++.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~ 159 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGIF----GEE 159 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------CSCEEEEESSHHHHHHHHHHGGGG----CGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEECCHHHHHHHHHHHHhC----CCc
Confidence 5999999999999999999999999999999998887754 346999999999999999988873 677
Q ss_pred -eEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccE
Q 005773 227 -CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305 (678)
Q Consensus 227 -v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~ 305 (678)
+..++|+... .++|+|+||+.|...+... ..++++|||||||++.+.+|.. ++..+ ...++
T Consensus 160 ~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~ 221 (472)
T 2fwr_A 160 YVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFR 221 (472)
T ss_dssp GEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEE
T ss_pred ceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeE
Confidence 8888877542 4789999999998766431 2468999999999999887764 44444 46789
Q ss_pred EEEEeccChh-------------------HHHHHHHhcCCCeEEe--cCCCC------------------------CCCC
Q 005773 306 MLFSATLTED-------------------VDELIKLSLTKPLRLS--ADPSA------------------------KRPS 340 (678)
Q Consensus 306 il~SATl~~~-------------------~~~l~~~~~~~p~~~~--~~~~~------------------------~~~~ 340 (678)
+++|||+... ...+...++..+.... +.... ....
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE 301 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh
Confidence 9999999721 2222111111111100 00000 0000
Q ss_pred CceeEEEE---Ee---------------chhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccC
Q 005773 341 TLTEEVVR---IR---------------RMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHG 402 (678)
Q Consensus 341 ~l~~~~~~---~~---------------~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg 402 (678)
.+.+.+.. .. ......+...+..++....+.++||||++...++.++..|. +..+||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g 376 (472)
T 2fwr_A 302 DFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITH 376 (472)
T ss_dssp SSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCS
T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeC
Confidence 00000000 00 00112233455555666668899999999999999999874 668999
Q ss_pred CCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCC---ceEEEEEeeCCc
Q 005773 403 NLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR---EGYAVTFVTDND 478 (678)
Q Consensus 403 ~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~---~G~~i~l~~~~d 478 (678)
+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|+|+..|+||+||+||.|+ ...+|.|++.+.
T Consensus 377 ~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 377 RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp SSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999884 345666777654
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=5.7e-39 Score=361.35 Aligned_cols=278 Identities=19% Similarity=0.204 Sum_probs=213.6
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCcee
Q 005773 148 PTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRC 227 (678)
Q Consensus 148 ~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v 227 (678)
+.++|..+++.+..+++++++|+||||||++|.+|+++. +.++||++|||+||.|+++.+.+. .+..+
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~---------g~~vLVl~PTReLA~Qia~~l~~~---~g~~v 285 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ---------GYKVLVLNPSVAATLGFGAYMSKA---HGIDP 285 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT---------TCCEEEEESCHHHHHHHHHHHHHH---HSCCC
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC---------CCeEEEEcchHHHHHHHHHHHHHH---hCCCe
Confidence 455666666666678899999999999999999988862 347999999999999998876654 35566
Q ss_pred EEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCcc--E
Q 005773 228 CLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ--T 305 (678)
Q Consensus 228 ~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q--~ 305 (678)
...+|+.. +..+++|+|+||++|+ .+ ..+.+.++++||||||| +++.+|...+..+++.++..+| +
T Consensus 286 g~~vG~~~-------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 286 NIRTGVRT-------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp EEECSSCE-------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSEE
T ss_pred eEEECcEe-------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCceE
Confidence 77777654 4667899999999983 33 35678899999999996 4667788888999999988777 6
Q ss_pred EEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHH
Q 005773 306 MLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHR 385 (678)
Q Consensus 306 il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~ 385 (678)
+++|||++..+. ...|....+...... . +.+.. .... +....++++||||+++..++.
T Consensus 354 il~SAT~~~~i~------~~~p~i~~v~~~~~~--~-----i~~~~--~~~~-------l~~~~~~~vLVFv~Tr~~ae~ 411 (666)
T 3o8b_A 354 VLATATPPGSVT------VPHPNIEEVALSNTG--E-----IPFYG--KAIP-------IEAIRGGRHLIFCHSKKKCDE 411 (666)
T ss_dssp EEEESSCTTCCC------CCCTTEEEEECBSCS--S-----EEETT--EEEC-------GGGSSSSEEEEECSCHHHHHH
T ss_pred EEECCCCCcccc------cCCcceEEEeecccc--h-----hHHHH--hhhh-------hhhccCCcEEEEeCCHHHHHH
Confidence 777999987321 111211111000000 0 00000 0000 122357899999999999999
Q ss_pred HHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEE----------EcC---------
Q 005773 386 LKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVI----------NYA--------- 446 (678)
Q Consensus 386 l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI----------~~d--------- 446 (678)
++..|...++.+..+||+|++.+ |.++..+|||||+++++|||++ |++|| |||
T Consensus 412 la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~ 483 (666)
T 3o8b_A 412 LAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET 483 (666)
T ss_dssp HHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE
T ss_pred HHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccc
Confidence 99999999999999999999875 5567779999999999999997 99988 677
Q ss_pred --CCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHH
Q 005773 447 --CPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (678)
Q Consensus 447 --~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~ 481 (678)
+|.+..+|+||+||+|| |++|. ++|+++.+...
T Consensus 484 ~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 484 TTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred ccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 99999 99999877543
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.2e-38 Score=349.73 Aligned_cols=280 Identities=19% Similarity=0.200 Sum_probs=195.5
Q ss_pred HHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChH
Q 005773 158 LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTK 237 (678)
Q Consensus 158 ~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~ 237 (678)
+++.|+|+++++|||||||++|++|+++.+... ++++||++||++||.|+++.+..+ .+....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-----~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~-- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-----RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFS-- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCC--
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-----CCeEEEEcchHHHHHHHHHHHhcC------CeEEecccce--
Confidence 356899999999999999999999999987653 457999999999999999887632 2332222110
Q ss_pred HHHHHhcCCCCEEEECchHHHHHHhcc-------CccCCCCeeEEEEeCCcccccCChHHHHHHHHHHC-CCCccEEEEE
Q 005773 238 MQETALRSMPDIVVATPGRMIDHLRNS-------MSVDLDDLAVLILDEADRLLELGFSAEIHELVRLC-PKRRQTMLFS 309 (678)
Q Consensus 238 ~~~~~l~~~~dIiv~Tp~~L~~~l~~~-------~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~-~~~~q~il~S 309 (678)
+|+||+++++++... ....+.++++|||||||++ +.++...+..+.... +..+|+++||
T Consensus 71 ------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~S 137 (440)
T 1yks_A 71 ------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMT 137 (440)
T ss_dssp ------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred ------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEe
Confidence 367776665433321 1234789999999999998 333333322222222 3679999999
Q ss_pred eccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHH
Q 005773 310 ATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKIL 389 (678)
Q Consensus 310 ATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~ 389 (678)
||+++.+..+... ..|+.... ..+...... ..+..+.. .++++||||+++..++.++..
T Consensus 138 AT~~~~~~~~~~~--~~~~~~~~--------------~~~~~~~~~---~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~ 196 (440)
T 1yks_A 138 ATPPGTSDEFPHS--NGEIEDVQ--------------TDIPSEPWN---TGHDWILA--DKRPTAWFLPSIRAANVMAAS 196 (440)
T ss_dssp SSCTTCCCSSCCC--SSCEEEEE--------------CCCCSSCCS---SSCHHHHH--CCSCEEEECSCHHHHHHHHHH
T ss_pred CCCCchhhhhhhc--CCCeeEee--------------eccChHHHH---HHHHHHHh--cCCCEEEEeCCHHHHHHHHHH
Confidence 9998764322211 01111100 000000000 01111111 267999999999999999999
Q ss_pred HhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEE-------------------cCCCCC
Q 005773 390 FGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN-------------------YACPRD 450 (678)
Q Consensus 390 L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~-------------------~d~p~s 450 (678)
|...++.+..+|| .+|..+++.|++|+.+|||||+++++|||+| +++||+ |+.|.+
T Consensus 197 L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~ 271 (440)
T 1yks_A 197 LRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRIS 271 (440)
T ss_dssp HHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECC
T ss_pred HHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccC
Confidence 9999999999999 4688999999999999999999999999999 999996 899999
Q ss_pred hhHHHHHHhhcccC-CCceEEEEEe---eCCcHHHHHHHHHHh
Q 005773 451 LTSYVHRVGRTARA-GREGYAVTFV---TDNDRSLLKAIAKRA 489 (678)
Q Consensus 451 ~~~yiQr~GRagR~-g~~G~~i~l~---~~~d~~~l~~i~~~~ 489 (678)
+.+|+||+||+||. |++|.|++|+ ++.+...++.+....
T Consensus 272 ~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 272 ASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred HHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 99999999999997 6899999996 677777777776653
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3e-38 Score=360.79 Aligned_cols=306 Identities=15% Similarity=0.184 Sum_probs=214.6
Q ss_pred HHHHcCCC-----CCcHHHH-----HHHHHHh------cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEE
Q 005773 139 ACEALGYS-----KPTPIQA-----ACIPLAL------TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (678)
Q Consensus 139 ~l~~~g~~-----~~~~iQ~-----~~i~~ll------~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl 202 (678)
++..+||. .||++|+ .+||.++ .|+|++++++||||||++|++|+++.+... ++++|||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-----~~~~lil 276 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-----RLRTAVL 276 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-----TCCEEEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-----CCcEEEE
Confidence 44556777 8999999 9999988 899999999999999999999999887653 4579999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc
Q 005773 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (678)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (678)
+||++||.|+++.+..+ + +....+.... .-..+.-+-+.+.+.+...+.. ...+.++++|||||||+
T Consensus 277 aPTr~La~Q~~~~l~~~----~--i~~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~--~~~l~~l~lvViDEaH~ 343 (673)
T 2wv9_A 277 APTRVVAAEMAEALRGL----P--VRYLTPAVQR-----EHSGNEIVDVMCHATLTHRLMS--PLRVPNYNLFVMDEAHF 343 (673)
T ss_dssp ESSHHHHHHHHHHTTTS----C--CEECCC---C-----CCCSCCCEEEEEHHHHHHHHHS--SSCCCCCSEEEEESTTC
T ss_pred ccHHHHHHHHHHHHhcC----C--eeeecccccc-----cCCHHHHHHHHHhhhhHHHHhc--ccccccceEEEEeCCcc
Confidence 99999999999887643 2 2211111000 0000112334444444444433 24678999999999999
Q ss_pred cccCChHHHHHHHHHHC-CCCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHH
Q 005773 283 LLELGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVL 361 (678)
Q Consensus 283 ll~~gf~~~i~~i~~~~-~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 361 (678)
+ +..+...+..+...+ +..+|+|+||||+++.+..+... ..|+.... ..+.. ......+
T Consensus 344 ~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~--------------~~~~~---~~~~~~l 403 (673)
T 2wv9_A 344 T-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVS--------------SEIPD---RAWSSGF 403 (673)
T ss_dssp C-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEE--------------CCCCS---SCCSSCC
T ss_pred c-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEe--------------eecCH---HHHHHHH
Confidence 8 222222222333333 36789999999998653321110 11111000 00000 0000111
Q ss_pred HHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccE
Q 005773 362 LSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT 441 (678)
Q Consensus 362 ~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~ 441 (678)
..+.. .++++||||+++..++.++..|...++.+..+||. +|..+++.|++|+.+|||||+++++|||+| +++
T Consensus 404 ~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~ 476 (673)
T 2wv9_A 404 EWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASR 476 (673)
T ss_dssp HHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSE
T ss_pred HHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcE
Confidence 11222 46899999999999999999999999999999993 789999999999999999999999999999 999
Q ss_pred EEE--------------------cCCCCChhHHHHHHhhcccC-CCceEEEEEe---eCCcHHHHHHHHHHh
Q 005773 442 VIN--------------------YACPRDLTSYVHRVGRTARA-GREGYAVTFV---TDNDRSLLKAIAKRA 489 (678)
Q Consensus 442 VI~--------------------~d~p~s~~~yiQr~GRagR~-g~~G~~i~l~---~~~d~~~l~~i~~~~ 489 (678)
||+ |++|.++.+|+||+||+||. |+.|.|++|+ ++.+..+++.+....
T Consensus 477 VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 477 VIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred EEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 998 67999999999999999998 7899999996 567766666665543
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.5e-37 Score=341.26 Aligned_cols=273 Identities=16% Similarity=0.216 Sum_probs=198.2
Q ss_pred HHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCC
Q 005773 156 IPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLS 235 (678)
Q Consensus 156 i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~ 235 (678)
..++..|+++++++|||||||++|++|+++.+... ++++||++|||+||.|+++.+. +..+....+...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-----~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~ 83 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-----RLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQ 83 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT-----TCCEEEEECSHHHHHHHHHHTT------TSCEEECC----
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCcEEEECchHHHHHHHHHHhc------CceEeEEecccc
Confidence 34456688999999999999999999999988643 4579999999999999988876 333333322211
Q ss_pred hHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc-----cccCChHHHHHHHHHHCCCCccEEEEEe
Q 005773 236 TKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR-----LLELGFSAEIHELVRLCPKRRQTMLFSA 310 (678)
Q Consensus 236 ~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~-----ll~~gf~~~i~~i~~~~~~~~q~il~SA 310 (678)
.. -..+.-+.++|.+.+...+.. ...+.++++|||||||+ ++.++|...+. .++.+|+|+|||
T Consensus 84 ~~-----~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SA 151 (459)
T 2z83_A 84 RE-----HQGNEIVDVMCHATLTHRLMS--PNRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTA 151 (459)
T ss_dssp ---------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECS
T ss_pred cC-----CCCCcEEEEEchHHHHHHhhc--cccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEc
Confidence 10 122345778899888777765 35688999999999998 45555433322 236789999999
Q ss_pred ccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHH
Q 005773 311 TLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILF 390 (678)
Q Consensus 311 Tl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L 390 (678)
|++..+..+... ..|+..... . .+. ...... ..++.. .++++||||+++..++.++..|
T Consensus 152 T~~~~~~~~~~~--~~pi~~~~~-~--~~~-----------~~~~~~----~~~l~~-~~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 152 TPPGTTDPFPDS--NAPIHDLQD-E--IPD-----------RAWSSG----YEWITE-YAGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp SCTTCCCSSCCC--SSCEEEEEC-C--CCS-----------SCCSSC----CHHHHH-CCSCEEEECSCHHHHHHHHHHH
T ss_pred CCCcchhhhccC--CCCeEEecc-c--CCc-----------chhHHH----HHHHHh-cCCCEEEEeCChHHHHHHHHHH
Confidence 998654322111 222221110 0 000 000000 011111 2679999999999999999999
Q ss_pred hhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEE--------------------cCCCCC
Q 005773 391 GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVIN--------------------YACPRD 450 (678)
Q Consensus 391 ~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~--------------------~d~p~s 450 (678)
...++.+..+||. +|..+++.|++|+.+|||||+++++|||||+ ++||+ |++|.+
T Consensus 211 ~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s 285 (459)
T 2z83_A 211 QRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPIT 285 (459)
T ss_dssp HHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECC
T ss_pred HhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCC
Confidence 9999999999995 6788999999999999999999999999999 99999 779999
Q ss_pred hhHHHHHHhhcccCCC-ceEEEEEeeCC
Q 005773 451 LTSYVHRVGRTARAGR-EGYAVTFVTDN 477 (678)
Q Consensus 451 ~~~yiQr~GRagR~g~-~G~~i~l~~~~ 477 (678)
+.+|+||+|||||.|. +|.+++|+++.
T Consensus 286 ~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 286 SASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999999997 99999999875
No 50
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.5e-35 Score=299.50 Aligned_cols=212 Identities=33% Similarity=0.506 Sum_probs=194.7
Q ss_pred cccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC--CCCCeEE
Q 005773 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK--RIPAIRV 199 (678)
Q Consensus 122 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~~~v 199 (678)
.+..+|.++++++.+++++..+||..|+++|.++++.++.|+|+++++|||||||++|++|++..+..... ...++++
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~ 105 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPIC 105 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSE
T ss_pred CccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999876431 2346789
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 005773 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (678)
Q Consensus 200 LIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (678)
|||+||++|+.|+++.+..++...++.+..++|+.........+..+++|+|+||++|.+++... ...+.++++|||||
T Consensus 106 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~-~~~~~~~~~lViDE 184 (242)
T 3fe2_A 106 LVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG-KTNLRRTTYLVLDE 184 (242)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT-SCCCTTCCEEEETT
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CCCcccccEEEEeC
Confidence 99999999999999999999999999999999999988888888888999999999999998764 46789999999999
Q ss_pred CcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecCC
Q 005773 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP 334 (678)
Q Consensus 280 ah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~ 334 (678)
||+++++||...+..++..+++.+|+++||||+++.+..++..++.+|+.+.+..
T Consensus 185 ah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 185 ADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred HHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999999887643
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.2e-35 Score=325.29 Aligned_cols=269 Identities=15% Similarity=0.156 Sum_probs=192.0
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~ 240 (678)
.|+++++++|||||||++|++|+++.+... +.++||++||++||.|+++.+. ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-----g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~---- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-----RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS---- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTT------TSCEEEC----------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-----CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc----
Confidence 378999999999999999999999776543 3579999999999999887765 4556655554221
Q ss_pred HHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHH-CCCCccEEEEEeccChhHHHH
Q 005773 241 TALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRL-CPKRRQTMLFSATLTEDVDEL 319 (678)
Q Consensus 241 ~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~-~~~~~q~il~SATl~~~~~~l 319 (678)
.-..+.-+.++|.+.+...+.. ...+.++++|||||||++ ..++......+... .+..+|+|+||||+++.+..+
T Consensus 66 -~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~ 141 (431)
T 2v6i_A 66 -ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAF 141 (431)
T ss_dssp ----CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSS
T ss_pred -cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhh
Confidence 1112345778898888776665 455889999999999997 33333333334333 256899999999999743211
Q ss_pred HHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceee
Q 005773 320 IKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 399 (678)
Q Consensus 320 ~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~ 399 (678)
... ..|+. .. ...+.. .....+..++.. .++++||||+++..++.++..|...++.+..
T Consensus 142 ~~~--~~~i~-~~-------------~~~~~~----~~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 142 PPS--NSPII-DE-------------ETRIPD----KAWNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp CCC--SSCCE-EE-------------ECCCCS----SCCSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cCC--CCcee-ec-------------cccCCH----HHHHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 100 01110 00 000000 000011112222 2578999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccE-----------------EEEcCCCCChhHHHHHHhhcc
Q 005773 400 LHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQT-----------------VINYACPRDLTSYVHRVGRTA 462 (678)
Q Consensus 400 lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~-----------------VI~~d~p~s~~~yiQr~GRag 462 (678)
+||. +|..+++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 577899999999999999999999999999 655 678899999999999999999
Q ss_pred cCCC-ceEEEEEe
Q 005773 463 RAGR-EGYAVTFV 474 (678)
Q Consensus 463 R~g~-~G~~i~l~ 474 (678)
|.|. .|.++++.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9884 56666665
No 52
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=293.75 Aligned_cols=207 Identities=44% Similarity=0.768 Sum_probs=191.8
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEE
Q 005773 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl 202 (678)
...+|+++++++.+++++..+||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+..... ++++|||
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~---~~~~lil 117 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQ---RLFALVL 117 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCC---SSCEEEE
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCC---CceEEEE
Confidence 3568999999999999999999999999999999999999999999999999999999999998876543 4679999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc
Q 005773 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (678)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (678)
+||++|+.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|.+++.+...+.+.++++|||||||+
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~ 197 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR 197 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHH
T ss_pred eCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhh
Confidence 99999999999999999888899999999999888777778889999999999999999875567789999999999999
Q ss_pred cccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEec
Q 005773 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA 332 (678)
Q Consensus 283 ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~ 332 (678)
+++++|...+..++..+++.+|+++||||+++.+.+++..++.+|+.+.+
T Consensus 198 l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 198 ILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999988765
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.5e-34 Score=344.77 Aligned_cols=322 Identities=16% Similarity=0.168 Sum_probs=221.3
Q ss_pred CCCcHHHHHHHHHHhcC--CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 005773 146 SKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (678)
Q Consensus 146 ~~~~~iQ~~~i~~ll~g--~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~ 223 (678)
..|+|+|..++..++.. .++|++++||+|||++++..+...+... ...++|||||+ .|+.||...+.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g----~~~rvLIVvP~-sLl~Qw~~E~~~~f--- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG----AAERVLIIVPE-TLQHQWLVEMLRRF--- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS----SCCCEEEECCT-TTHHHHHHHHHHHS---
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC----CCCeEEEEeCH-HHHHHHHHHHHHHh---
Confidence 35899999999998874 4899999999999999766555544322 23369999999 99999998886643
Q ss_pred CceeEEEecCCChHHHHH--HhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChH--HHHHHHHHHC
Q 005773 224 DIRCCLVVGGLSTKMQET--ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFS--AEIHELVRLC 299 (678)
Q Consensus 224 ~~~v~~~~g~~~~~~~~~--~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~--~~i~~i~~~~ 299 (678)
++.+..+.|+........ ......+|+|+|++.|.........+....|++|||||||++.+.+.. .....+....
T Consensus 224 ~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 666666554432211111 112346899999998864322211234557999999999999865422 1222333333
Q ss_pred CCCccEEEEEeccCh----hHHHHHHHhcCC-----------------------------C-------------------
Q 005773 300 PKRRQTMLFSATLTE----DVDELIKLSLTK-----------------------------P------------------- 327 (678)
Q Consensus 300 ~~~~q~il~SATl~~----~~~~l~~~~~~~-----------------------------p------------------- 327 (678)
....+++++|||+.. ++..++...... +
T Consensus 304 ~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~ 383 (968)
T 3dmq_A 304 EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIE 383 (968)
T ss_dssp TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSS
T ss_pred hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhH
Confidence 355679999999842 111111110000 0
Q ss_pred --------------------------------eEEecCC--CCCCCCC-ceeEEEEE-----------------------
Q 005773 328 --------------------------------LRLSADP--SAKRPST-LTEEVVRI----------------------- 349 (678)
Q Consensus 328 --------------------------------~~~~~~~--~~~~~~~-l~~~~~~~----------------------- 349 (678)
+.+.... ....+.. +....+..
T Consensus 384 ~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (968)
T 3dmq_A 384 PLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDR 463 (968)
T ss_dssp TTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGG
T ss_pred HHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHH
Confidence 0000000 0000000 00000000
Q ss_pred -------------------echhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhh-cCCceeeccCCCCHHHH
Q 005773 350 -------------------RRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGL-AALKAAELHGNLTQAQR 409 (678)
Q Consensus 350 -------------------~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~-~~~~~~~lhg~l~~~~R 409 (678)
.......+...+..++....+.++||||+++..++.++..|.. .|+.+..+||+|++.+|
T Consensus 464 ~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R 543 (968)
T 3dmq_A 464 ARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIER 543 (968)
T ss_dssp THHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHH
T ss_pred HhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHH
Confidence 0011223455666666666788999999999999999999994 69999999999999999
Q ss_pred HHHHHHHhcCC--ccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEee
Q 005773 410 LEALELFRKQH--VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475 (678)
Q Consensus 410 ~~~l~~F~~g~--~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~ 475 (678)
..+++.|++|+ ++|||||+++++|+|+|++++||+||+|+|+..|+||+||+||.|+.|.|++++.
T Consensus 544 ~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 544 DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp HHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred HHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 99999999998 9999999999999999999999999999999999999999999998886655543
No 54
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=8.9e-35 Score=302.84 Aligned_cols=205 Identities=30% Similarity=0.488 Sum_probs=183.8
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEE
Q 005773 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVL 200 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g--~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vL 200 (678)
+..+|.+++|++.++++|..+||..|+++|.++||.++.| +|+++++|||||||++|++|+++++.... .++++|
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~---~~~~~l 166 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN---KYPQCL 166 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS---CSCCEE
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC---CCceEE
Confidence 4678999999999999999999999999999999999998 99999999999999999999999985542 356899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhcC-CceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 005773 201 ILTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (678)
Q Consensus 201 Il~Ptr~La~Q~~~~~~~l~~~~-~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (678)
||+|||+||.|+++.+..++.+. ++.+..++|+...... ...+++|+|+||++|++++.+...+.+.++++|||||
T Consensus 167 il~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 167 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (300)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETT
T ss_pred EEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeC
Confidence 99999999999999999998764 7888888887664322 2567899999999999999775567789999999999
Q ss_pred Cccccc-CChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecC
Q 005773 280 ADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333 (678)
Q Consensus 280 ah~ll~-~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~ 333 (678)
||+|++ +||...+..++..+++.+|+++||||+++.+..++..++.+|+.+.+.
T Consensus 244 ad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 244 ADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 999997 799999999999999999999999999999999999999999888763
No 55
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=5.9e-35 Score=332.63 Aligned_cols=312 Identities=20% Similarity=0.202 Sum_probs=221.9
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 005773 133 SRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (678)
Q Consensus 133 ~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~ 212 (678)
....++++.++++ | .|.......+.|++++++||||||||+ ++++.+.... ..+|++|||+||.|+
T Consensus 130 ~~d~l~~i~dl~~--p--~~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~~------~gl~l~PtR~LA~Qi 195 (677)
T 3rc3_A 130 CKDDLRKISDLRI--P--PNWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSAK------SGVYCGPLKLLAHEI 195 (677)
T ss_dssp CHHHHHHHTBCCC--G--GGGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHSS------SEEEEESSHHHHHHH
T ss_pred CHHHHHHHhhccC--h--hhhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhcC------CeEEEeCHHHHHHHH
Confidence 3344455544433 2 333334455789999999999999998 4444444331 249999999999999
Q ss_pred HHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHH
Q 005773 213 HSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEI 292 (678)
Q Consensus 213 ~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i 292 (678)
++.+..+ ++.+..++|+..... ..-....+++++|++.+. ....+++|||||||++++.+|...+
T Consensus 196 ~~~l~~~----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~ 260 (677)
T 3rc3_A 196 FEKSNAA----GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAW 260 (677)
T ss_dssp HHHHHHT----TCCEEEECSSCEECC--STTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHH
T ss_pred HHHHHhc----CCcEEEEECCeeEEe--cCCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHH
Confidence 9998874 778888888755410 000012456666664431 2467899999999999999999998
Q ss_pred HHHHHHCC-CCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCCc
Q 005773 293 HELVRLCP-KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTS 371 (678)
Q Consensus 293 ~~i~~~~~-~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 371 (678)
..++..++ ...|++++|||. +.+..+.... ..++.+... .+...+. +.... + ..+... ..
T Consensus 261 ~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~---~r~~~l~---~~~~~---------l-~~l~~~-~~ 321 (677)
T 3rc3_A 261 TRALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEVRDY---KRLTPIS---VLDHA---------L-ESLDNL-RP 321 (677)
T ss_dssp HHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEEEEC---CCSSCEE---ECSSC---------C-CSGGGC-CT
T ss_pred HHHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEEEEe---eecchHH---HHHHH---------H-HHHHhc-CC
Confidence 88888887 778999999995 3344444332 333333221 1111111 00000 0 011111 34
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc--CCccEEEEcccccccCCCCCccEEEEcCC--
Q 005773 372 KVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK--QHVDFLIATDVAARGLDIIGVQTVINYAC-- 447 (678)
Q Consensus 372 ~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~--g~~~vLvaT~~~~~GlDi~~v~~VI~~d~-- 447 (678)
+.||||+++..++.++..|...++.+..+||+|++.+|..+++.|++ |..+|||||+++++|||+ +|++||++++
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k 400 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIK 400 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccc
Confidence 56899999999999999999999999999999999999999999999 889999999999999999 9999999999
Q ss_pred ------------CCChhHHHHHHhhcccCCCc---eEEEEEeeCCcHHHHHHHHHHhcCccc
Q 005773 448 ------------PRDLTSYVHRVGRTARAGRE---GYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (678)
Q Consensus 448 ------------p~s~~~yiQr~GRagR~g~~---G~~i~l~~~~d~~~l~~i~~~~~~~~~ 494 (678)
|.+..+|+||+|||||.|.. |.|+.+ ...+...++.+.......+.
T Consensus 401 ~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l-~~~d~~~~~~~~~~~~~~i~ 461 (677)
T 3rc3_A 401 PSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM-NHEDLSLLKEILKRPVDPIR 461 (677)
T ss_dssp -----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEES-STTHHHHHHHHHHSCCCCCC
T ss_pred cccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEE-ecchHHHHHHHHhcCcchhh
Confidence 88999999999999999854 766655 44565566666554444333
No 56
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.9e-34 Score=293.34 Aligned_cols=219 Identities=35% Similarity=0.566 Sum_probs=189.6
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC------CCCC
Q 005773 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK------RIPA 196 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~------~~~~ 196 (678)
...+|.+++|++.++++|..+||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+..... ...+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 4567999999999999999999999999999999999999999999999999999999999999875431 1234
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEE
Q 005773 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (678)
Q Consensus 197 ~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lV 276 (678)
+++|||+||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|..++... .+.+.++++||
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~lV 179 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN-KISLEFCKYIV 179 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT-SBCCTTCCEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC-CCChhhCCEEE
Confidence 68999999999999999999999888889999999999888888888888999999999999988775 46788999999
Q ss_pred EeCCcccccCChHHHHHHHHHH--CCC--CccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCc
Q 005773 277 LDEADRLLELGFSAEIHELVRL--CPK--RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTL 342 (678)
Q Consensus 277 vDEah~ll~~gf~~~i~~i~~~--~~~--~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l 342 (678)
|||||++++++|...+..++.. .+. .+|+++||||+++++..++..++.+|+.+.+.........+
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i 249 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSI 249 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---------
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCc
Confidence 9999999999999999999985 444 68999999999999999999999999888775544333333
No 57
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=287.86 Aligned_cols=209 Identities=32% Similarity=0.489 Sum_probs=180.7
Q ss_pred CcccCCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC---CCCC
Q 005773 121 SFHANSFME-LNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK---RIPA 196 (678)
Q Consensus 121 ~~~~~~f~~-l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~---~~~~ 196 (678)
+.+..+|.+ +++++.+++++.++||..|+++|.++++.++.|+|+++++|||||||++|++|++..+..... ...+
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~ 94 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNG 94 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CC
T ss_pred CCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCC
Confidence 344567888 799999999999999999999999999999999999999999999999999999998764321 1246
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEE
Q 005773 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (678)
Q Consensus 197 ~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lV 276 (678)
+++||++||++|+.|+++.+..+. ..++.+..++|+.........+..+++|+|+||++|..++... ...+.++++||
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~-~~~~~~~~~lV 172 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN-SVNLRSITYLV 172 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTT-CCCCTTCCEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-CcCcccceEEE
Confidence 789999999999999999999986 4588889999998877777778888999999999999988764 56788999999
Q ss_pred EeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEe
Q 005773 277 LDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS 331 (678)
Q Consensus 277 vDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~ 331 (678)
|||||++++++|...+..++..++..+|+++||||+++.+..++..++.+|+.+.
T Consensus 173 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999998764
No 58
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.1e-34 Score=331.01 Aligned_cols=302 Identities=16% Similarity=0.149 Sum_probs=189.1
Q ss_pred CCcHHHHHHHHHHhc----C-CCEEEEcCCCchhhhhhhhchhHHHhcCC----CCCCCeEEEEEcCcHHHHHHHH-HHH
Q 005773 147 KPTPIQAACIPLALT----G-RDICGSAITGSGKTAAFALPTLERLLYRP----KRIPAIRVLILTPTRELAVQVH-SMI 216 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~----g-~dvl~~a~TGsGKT~~~~l~~l~~l~~~~----~~~~~~~vLIl~Ptr~La~Q~~-~~~ 216 (678)
.|+|+|.++++.++. | ++++++++||||||+++ ++++..++... .....+++|||+||++|+.|++ +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999999886 4 56899999999999984 55666655432 1124578999999999999998 666
Q ss_pred HHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhcc---CccCCCCeeEEEEeCCcccccCChHHHHH
Q 005773 217 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNS---MSVDLDDLAVLILDEADRLLELGFSAEIH 293 (678)
Q Consensus 217 ~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~---~~~~l~~i~~lVvDEah~ll~~gf~~~i~ 293 (678)
..+ +..+..+.++ ......+|+|+||++|...+... ..+....+++|||||||++...+ ...+.
T Consensus 257 ~~~----~~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPF----GDARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhc----chhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 654 3333433332 13456799999999998876421 13456789999999999987643 24456
Q ss_pred HHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecC-----CCCCCCCCceeEEEEE-------------------
Q 005773 294 ELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD-----PSAKRPSTLTEEVVRI------------------- 349 (678)
Q Consensus 294 ~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~-----~~~~~~~~l~~~~~~~------------------- 349 (678)
.++..++ ..++++||||+...........+..++..... .....+.. ...+..
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYR--VHRVISEVDAAGWRPSKGDVDRFGR 400 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEE--EEEEEETTCC---------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcE--EEEeeeeeecccccccccccccccc
Confidence 6667765 46899999998854333333333333221100 00000000 000000
Q ss_pred ---------echhh----hhHHH----HHHHHhh-ccCCceEEEEeccHHHHHHHHHHHhhcCC--------ceeeccCC
Q 005773 350 ---------RRMRE----VNQEA----VLLSLCS-KTFTSKVIIFSGTKQAAHRLKILFGLAAL--------KAAELHGN 403 (678)
Q Consensus 350 ---------~~~~~----~~~~~----~l~~~~~-~~~~~~vLVF~~s~~~~~~l~~~L~~~~~--------~~~~lhg~ 403 (678)
..... ..... .+..++. ....+++||||+++..++.++..|...+. .+..+||.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~ 480 (590)
T 3h1t_A 401 EIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSE 480 (590)
T ss_dssp --------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSST
T ss_pred ccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCC
Confidence 00000 00001 1222222 23458999999999999999999976543 26789998
Q ss_pred CCHHHHHHHHHHHhcCCcc---EEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCC
Q 005773 404 LTQAQRLEALELFRKQHVD---FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGR 466 (678)
Q Consensus 404 l~~~~R~~~l~~F~~g~~~---vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~ 466 (678)
++. +|..+++.|++|+.. |||||+++++|+|+|+|++||+|++|+++..|+||+||+||.|.
T Consensus 481 ~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 481 EGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp THH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred ChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 764 799999999998866 88999999999999999999999999999999999999999764
No 59
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=5.7e-34 Score=286.63 Aligned_cols=209 Identities=39% Similarity=0.622 Sum_probs=186.6
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCC-CCCCeEEEEE
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPK-RIPAIRVLIL 202 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~vLIl 202 (678)
..+|.++++++.++++|..+||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+..... ...++++||+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 467999999999999999999999999999999999999999999999999999999999998875432 1235689999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcc
Q 005773 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 282 (678)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ 282 (678)
+||++|+.|+++.+..+....++.+..++|+.........+ .+++|+|+||++|..++.....+.+.++++|||||||+
T Consensus 104 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 182 (236)
T 2pl3_A 104 SPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR 182 (236)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHH
T ss_pred eCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHH
Confidence 99999999999999999888889999999988766655554 57899999999999998875556788999999999999
Q ss_pred cccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecC
Q 005773 283 LLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333 (678)
Q Consensus 283 ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~ 333 (678)
+++++|...+..++..++..+|+++||||+++.+..+++.++.+|..+.+.
T Consensus 183 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 183 ILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999888664
No 60
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.2e-33 Score=278.05 Aligned_cols=202 Identities=35% Similarity=0.625 Sum_probs=184.7
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcC
Q 005773 125 NSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (678)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~P 204 (678)
.+|++++|++.+++++..+||..|+|+|.++++.++.|+|+++++|||||||++|++|+++.+.... .++++||++|
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~---~~~~~lil~P 79 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK---DNIQAMVIVP 79 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS---CSCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC---CCeeEEEEeC
Confidence 5799999999999999999999999999999999999999999999999999999999998875432 3567999999
Q ss_pred cHHHHHHHHHHHHHHhhcC-CceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccc
Q 005773 205 TRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (678)
Q Consensus 205 tr~La~Q~~~~~~~l~~~~-~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (678)
|++|+.|+++.+..+.... ++.+..++|+.........+..+++|+|+||++|...+... ...+.++++|||||||++
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~lViDEah~~ 158 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG-VAKVDHVQMIVLDEADKL 158 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-CSCCTTCCEEEEETHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC-CcCcccCCEEEEEChHHh
Confidence 9999999999999988766 78899999998888777778888999999999999988764 456889999999999999
Q ss_pred ccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEE
Q 005773 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRL 330 (678)
Q Consensus 284 l~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~ 330 (678)
.+++|...+..++..+++..|+++||||+++.+..++..++.+|+.+
T Consensus 159 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 159 LSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999999999999999999999999999998765
No 61
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=5.6e-34 Score=286.95 Aligned_cols=206 Identities=34% Similarity=0.563 Sum_probs=176.8
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEE
Q 005773 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl 202 (678)
...+|++++|++.+++++..+||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+... ..++++||+
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~---~~~~~~lil 104 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE---FKETQALVL 104 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT---SCSCCEEEE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---CCCceEEEE
Confidence 35679999999999999999999999999999999999999999999999999999999999987543 235679999
Q ss_pred cCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCC-CCEEEECchHHHHHHhccCccCCCCeeEEEEeCCc
Q 005773 203 TPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSM-PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 281 (678)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~-~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah 281 (678)
+||++|+.|+++.+..++...++.+..++|+.........+..+ ++|+|+||++|.+.+... .+.+..+++|||||||
T Consensus 105 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~lViDEah 183 (237)
T 3bor_A 105 APTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR-YLSPKWIKMFVLDEAD 183 (237)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTT-SSCSTTCCEEEEESHH
T ss_pred ECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhC-CcCcccCcEEEECCch
Confidence 99999999999999999888888899999988766666556554 899999999999988764 4668899999999999
Q ss_pred ccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEec
Q 005773 282 RLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA 332 (678)
Q Consensus 282 ~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~ 332 (678)
++++++|...+..++..++..+|+++||||+++.+..++..++.+|+.+.+
T Consensus 184 ~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 184 EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999988765
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=3.4e-34 Score=284.91 Aligned_cols=205 Identities=32% Similarity=0.559 Sum_probs=184.3
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
..+|+++++++.+++++..+||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+.... .++++||++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~---~~~~~lil~ 79 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER---AEVQAVITA 79 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS---CSCCEEEEC
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc---CCceEEEEc
Confidence 35799999999999999999999999999999999999999999999999999999999999875432 356799999
Q ss_pred CcHHHHHHHHHHHHHHhhcC----CceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 005773 204 PTRELAVQVHSMIEKIAQFT----DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (678)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~----~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (678)
||++|+.|+++.+..+.... ++.+..++|+.........+..+++|+|+||++|.+++... .+.+.++++|||||
T Consensus 80 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~lViDE 158 (219)
T 1q0u_A 80 PTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ-ALDVHTAHILVVDE 158 (219)
T ss_dssp SSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT-CCCGGGCCEEEECS
T ss_pred CcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcC-CCCcCcceEEEEcC
Confidence 99999999999999998766 68888889988766555556668899999999999988764 46678899999999
Q ss_pred CcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEec
Q 005773 280 ADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA 332 (678)
Q Consensus 280 ah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~ 332 (678)
||++.+++|...+..++..+++.+|+++||||+++++.++++.++.+|..+.+
T Consensus 159 ah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 159 ADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred chHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 99999999999999999999999999999999999999999999999988765
No 63
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.6e-34 Score=290.74 Aligned_cols=207 Identities=39% Similarity=0.618 Sum_probs=184.3
Q ss_pred cccCCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCC-CCCeE
Q 005773 122 FHANSFMELN--LSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKR-IPAIR 198 (678)
Q Consensus 122 ~~~~~f~~l~--l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~ 198 (678)
+...+|.+++ +++.+++++..+||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+...... ..+++
T Consensus 49 ~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 128 (262)
T 3ly5_A 49 FEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTG 128 (262)
T ss_dssp SGGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCC
T ss_pred cccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCce
Confidence 3456677887 99999999999999999999999999999999999999999999999999999988763321 13567
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEe
Q 005773 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILD 278 (678)
Q Consensus 199 vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvD 278 (678)
+|||+||++||.|+++.+..++...++.+..++|+.........+..+++|+|+||++|..++.....+.+.++++||||
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 99999999999999999999998889999999999988888777777899999999999999987666778999999999
Q ss_pred CCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCe
Q 005773 279 EADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPL 328 (678)
Q Consensus 279 Eah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~ 328 (678)
|||+++++||...+..++..++..+|+++||||+++.+..+++..+.++.
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred ChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999998887653
No 64
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=2.1e-31 Score=294.93 Aligned_cols=321 Identities=20% Similarity=0.215 Sum_probs=231.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
+|+. |+++|..+.-.+..|+ |+.+.||+|||+++.+|++-..+ .+..|.||+||+.||.|-++++..+..+
T Consensus 72 lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL------~G~~vhVvT~ndyLA~rdae~m~~l~~~ 142 (822)
T 3jux_A 72 LGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL------IGKGVHLVTVNDYLARRDALWMGPVYLF 142 (822)
T ss_dssp TSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT------TSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred hCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh------cCCceEEEeccHHHHHhHHHHHHHHHHH
Confidence 4554 9999999999888887 99999999999999999974432 2445899999999999999999999999
Q ss_pred CCceeEEEecC--------------------------------------------------CChHHHHHHhcCCCCEEEE
Q 005773 223 TDIRCCLVVGG--------------------------------------------------LSTKMQETALRSMPDIVVA 252 (678)
Q Consensus 223 ~~~~v~~~~g~--------------------------------------------------~~~~~~~~~l~~~~dIiv~ 252 (678)
.|++|++++.. .+........ .+||+++
T Consensus 143 Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DItYg 220 (822)
T 3jux_A 143 LGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVTYG 220 (822)
T ss_dssp TTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEEEE
T ss_pred hCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCEEc
Confidence 99999999872 1222222222 2799999
Q ss_pred CchHH-HHHHhccCcc-----CCCCeeEEEEeCCcccc-c--------CC----hH------------------------
Q 005773 253 TPGRM-IDHLRNSMSV-----DLDDLAVLILDEADRLL-E--------LG----FS------------------------ 289 (678)
Q Consensus 253 Tp~~L-~~~l~~~~~~-----~l~~i~~lVvDEah~ll-~--------~g----f~------------------------ 289 (678)
|..-| .++|+.+... -...+.+.||||+|.++ + .| -.
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek 300 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEK 300 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCS
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcc
Confidence 98765 5566554322 24668899999999843 1 00 00
Q ss_pred -----------------------------HHHHHH---HH---HCCC---------------------------------
Q 005773 290 -----------------------------AEIHEL---VR---LCPK--------------------------------- 301 (678)
Q Consensus 290 -----------------------------~~i~~i---~~---~~~~--------------------------------- 301 (678)
..+..+ ++ .+.+
T Consensus 301 ~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQ 380 (822)
T 3jux_A 301 ARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQ 380 (822)
T ss_dssp SSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHH
T ss_pred cCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHH
Confidence 000000 00 0000
Q ss_pred ----------------------------CccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechh
Q 005773 302 ----------------------------RRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMR 353 (678)
Q Consensus 302 ----------------------------~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~ 353 (678)
-.++.+||+|+..+..++...+--. .+.+ +.........+....+. .
T Consensus 381 aiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~I-Ptnkp~~R~d~~d~vy~--t 455 (822)
T 3jux_A 381 AIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVI-PTHKPMIRKDHDDLVFR--T 455 (822)
T ss_dssp HHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEEC-CCSSCCCCEECCCEEES--S
T ss_pred HHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEE-CCCCCcceeecCcEEEe--c
Confidence 0268999999998887776655322 2222 22221122222111222 2
Q ss_pred hhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccccc
Q 005773 354 EVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431 (678)
Q Consensus 354 ~~~~~~~l~~~~~~--~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~ 431 (678)
...+...+...+.. ..+.++||||+|+..++.++..|...|+.+..|||+..+.++..+...|+.| .|+|||++|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAg 533 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAG 533 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhh
Confidence 33444555544433 2467999999999999999999999999999999996666665555666655 5999999999
Q ss_pred ccCCCC--------CccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHH
Q 005773 432 RGLDII--------GVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481 (678)
Q Consensus 432 ~GlDi~--------~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~ 481 (678)
||+||+ ++.+||+|++|.++..|+||+|||||+|.+|.+++|++..|..+
T Consensus 534 RGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~ 591 (822)
T 3jux_A 534 RGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLL 591 (822)
T ss_dssp TTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHH
T ss_pred CCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHH
Confidence 999998 67799999999999999999999999999999999999988543
No 65
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.3e-33 Score=282.99 Aligned_cols=206 Identities=33% Similarity=0.535 Sum_probs=182.5
Q ss_pred cccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEE
Q 005773 122 FHANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLI 201 (678)
Q Consensus 122 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLI 201 (678)
....+|+++++++.+++++..+||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+.... .++++||
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~---~~~~~li 97 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN---LSTQILI 97 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS---CSCCEEE
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC---CCceEEE
Confidence 3456799999999999999999999999999999999999999999999999999999999999876432 3567999
Q ss_pred EcCcHHHHHHHHHHHHHHhhcC-CceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCC
Q 005773 202 LTPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280 (678)
Q Consensus 202 l~Ptr~La~Q~~~~~~~l~~~~-~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEa 280 (678)
|+||++|+.|+++.+..+.... ++++..++|+.........+ .+++|+|+||++|..++... .+.+.++++||||||
T Consensus 98 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~-~~~~~~~~~lViDEa 175 (230)
T 2oxc_A 98 LAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELD-YLNPGSIRLFILDEA 175 (230)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTT-SSCGGGCCEEEESSH
T ss_pred EeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcC-CcccccCCEEEeCCc
Confidence 9999999999999999987654 88999999988776655554 46899999999999988764 466788999999999
Q ss_pred cccccCC-hHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEec
Q 005773 281 DRLLELG-FSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA 332 (678)
Q Consensus 281 h~ll~~g-f~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~ 332 (678)
|+++++| |...+..++..++..+|+++||||+++.+..++..++.+|+.+.+
T Consensus 176 h~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 176 DKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp HHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred hHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999998 999999999999999999999999999999999999999987754
No 66
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.8e-33 Score=276.84 Aligned_cols=204 Identities=44% Similarity=0.651 Sum_probs=184.7
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCc
Q 005773 126 SFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (678)
Q Consensus 126 ~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Pt 205 (678)
+|+++++++.+++++..+||..|+|+|.++++.+++|+++++++|||||||++|++|+++.+........++++||++||
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999999998754444456789999999
Q ss_pred HHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccccc
Q 005773 206 RELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (678)
Q Consensus 206 r~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~ 285 (678)
++|+.|+++.+..+... +++..++|+.........+..+++|+|+||++|..++... .+.+.++++|||||||++++
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG-VLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT-SSCCTTCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC-CcchhhceEEEEEChhHhhc
Confidence 99999999999987643 7788889988877777777778999999999999988774 56788999999999999999
Q ss_pred CChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEec
Q 005773 286 LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSA 332 (678)
Q Consensus 286 ~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~ 332 (678)
++|...+..++..++..+|++++|||+++.+..++..++.+|+.+.+
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999999999999999999999999999999987754
No 67
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=3.7e-33 Score=278.22 Aligned_cols=205 Identities=34% Similarity=0.567 Sum_probs=177.9
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT 203 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~ 203 (678)
..+|.++++++.+++++..+||..|+++|.++++.++.|+|+++++|||||||++|++|+++.+.... .++++||++
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~---~~~~~lil~ 89 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV---KAPQALMLA 89 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC---CSCCEEEEC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC---CCceEEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999875432 356899999
Q ss_pred CcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccc
Q 005773 204 PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL 283 (678)
Q Consensus 204 Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l 283 (678)
||++|+.|+++.+..++...++.+..++|+.........+.. ++|+|+||++|...+... ...+.++++|||||||++
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~-~~~~~~~~~iViDEah~~ 167 (224)
T 1qde_A 90 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRR-RFRTDKIKMFILDEADEM 167 (224)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTT-SSCCTTCCEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhC-CcchhhCcEEEEcChhHH
Confidence 999999999999999988889999999998876665555444 899999999999988764 566889999999999999
Q ss_pred ccCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEecC
Q 005773 284 LELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLSAD 333 (678)
Q Consensus 284 l~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~ 333 (678)
.+++|...+..++..++...|++++|||+++.+..++..++.+|+.+.+.
T Consensus 168 ~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 168 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred hhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999887664
No 68
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=8.6e-33 Score=309.22 Aligned_cols=313 Identities=16% Similarity=0.214 Sum_probs=215.7
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 147 KPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll----~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
.|+|+|.++++++. .++++|++++||+|||+++ +.++..+.... ...++|||||+ .|+.||.+.+.+++.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~a-i~~i~~~~~~~---~~~~~LIv~P~-~l~~qw~~e~~~~~~- 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQT-IAVFSDAKKEN---ELTPSLVICPL-SVLKNWEEELSKFAP- 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHH-HHHHHHHHHTT---CCSSEEEEECS-TTHHHHHHHHHHHCT-
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHH-HHHHHHHHhcC---CCCCEEEEccH-HHHHHHHHHHHHHCC-
Confidence 59999999999874 5789999999999999985 55555554332 23469999995 688999999998753
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCC
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKR 302 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~ 302 (678)
+.++..+.|+... .....++|+|+||+.|..... +....+++|||||||++.+.+. .....+..++ .
T Consensus 111 -~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l~-~ 177 (500)
T 1z63_A 111 -HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-S 177 (500)
T ss_dssp -TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-E
T ss_pred -CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHhH--HHHHHHHhhc-c
Confidence 5666666665422 122457999999999865433 3345789999999999987542 2334444443 4
Q ss_pred ccEEEEEeccChh-HHHH---HHHh--------------------------------cCCCeEEecCCC-----CCCCCC
Q 005773 303 RQTMLFSATLTED-VDEL---IKLS--------------------------------LTKPLRLSADPS-----AKRPST 341 (678)
Q Consensus 303 ~q~il~SATl~~~-~~~l---~~~~--------------------------------~~~p~~~~~~~~-----~~~~~~ 341 (678)
.+.+++|||+..+ +.++ +... +-.|+.+..... ...|+.
T Consensus 178 ~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~ 257 (500)
T 1z63_A 178 KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDK 257 (500)
T ss_dssp EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSE
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCC
Confidence 6789999998532 2221 1110 001222221110 012221
Q ss_pred ceeEEEEEechhh------------------------------------------------------hhHHHHHHHHhhc
Q 005773 342 LTEEVVRIRRMRE------------------------------------------------------VNQEAVLLSLCSK 367 (678)
Q Consensus 342 l~~~~~~~~~~~~------------------------------------------------------~~~~~~l~~~~~~ 367 (678)
....+.+..... ..+...+..++..
T Consensus 258 -~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~ 336 (500)
T 1z63_A 258 -IETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEE 336 (500)
T ss_dssp -EEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHH
T ss_pred -eEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHH
Confidence 222222221000 0111112222221
Q ss_pred --cCCceEEEEeccHHHHHHHHHHHhhc-CCceeeccCCCCHHHHHHHHHHHhcC-Ccc-EEEEcccccccCCCCCccEE
Q 005773 368 --TFTSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQ-HVD-FLIATDVAARGLDIIGVQTV 442 (678)
Q Consensus 368 --~~~~~vLVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~l~~~~R~~~l~~F~~g-~~~-vLvaT~~~~~GlDi~~v~~V 442 (678)
..+.++||||++...+..+...|... ++.+..+||++++.+|.++++.|++| ... +|++|+++++|+|++++++|
T Consensus 337 ~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~v 416 (500)
T 1z63_A 337 ALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV 416 (500)
T ss_dssp HHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEE
T ss_pred HHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEE
Confidence 24679999999999999999999885 99999999999999999999999998 455 79999999999999999999
Q ss_pred EEcCCCCChhHHHHHHhhcccCCCce--EEEEEeeCCcH
Q 005773 443 INYACPRDLTSYVHRVGRTARAGREG--YAVTFVTDNDR 479 (678)
Q Consensus 443 I~~d~p~s~~~yiQr~GRagR~g~~G--~~i~l~~~~d~ 479 (678)
|+||+|||+..|+||+||++|.|+.+ .++.|++.+..
T Consensus 417 i~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ti 455 (500)
T 1z63_A 417 IHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 455 (500)
T ss_dssp EESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSH
T ss_pred EEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCH
Confidence 99999999999999999999999764 45667777753
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.7e-32 Score=272.74 Aligned_cols=205 Identities=36% Similarity=0.655 Sum_probs=180.8
Q ss_pred ccCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEE
Q 005773 123 HANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl 202 (678)
...+|++++|++.+++++..+||..|+++|.++++.+++|+|+++++|||||||++|++|++..+.... ..+++||+
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~---~~~~~lil 88 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT---GQVSVLVM 88 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT---TCCCEEEE
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC---CCEEEEEE
Confidence 446799999999999999999999999999999999999999999999999999999999998874322 24579999
Q ss_pred cCcHHHHHHHHHHHHHHhhcC-CceeEEEecCCChHHHHHHhc-CCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCC
Q 005773 203 TPTRELAVQVHSMIEKIAQFT-DIRCCLVVGGLSTKMQETALR-SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280 (678)
Q Consensus 203 ~Ptr~La~Q~~~~~~~l~~~~-~~~v~~~~g~~~~~~~~~~l~-~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEa 280 (678)
+||++|+.|+++.+..+.... ++++..++|+.........+. ..++|+|+||++|..++... .+.+.++++||||||
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 89 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK-SLNLKHIKHFILDEC 167 (220)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT-SSCCTTCCEEEEESH
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhC-CCCcccCCEEEEcCH
Confidence 999999999999999988765 789999999988766655554 45799999999999988764 567889999999999
Q ss_pred ccccc-CChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCeEEe
Q 005773 281 DRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPLRLS 331 (678)
Q Consensus 281 h~ll~-~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~ 331 (678)
|++++ .+|...+..++..++..+|++++|||+++.+..++..++.+|+.+.
T Consensus 168 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 168 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99987 5888899999999999999999999999999999999999998764
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=277.06 Aligned_cols=210 Identities=34% Similarity=0.540 Sum_probs=178.4
Q ss_pred ccCCcccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeE
Q 005773 123 HANSFMEL----NLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIR 198 (678)
Q Consensus 123 ~~~~f~~l----~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~ 198 (678)
+..+|.++ ++++.+++++..+||..|+|+|.++++.++.|+|+++++|||||||++|++|+++.+.... ..+++
T Consensus 23 ~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~ 100 (245)
T 3dkp_A 23 PIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA--NKGFR 100 (245)
T ss_dssp CCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC--SSSCC
T ss_pred cccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc--cCCce
Confidence 45667776 8999999999999999999999999999999999999999999999999999999885432 23568
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHH-HHhcCCCCEEEECchHHHHHHhccC-ccCCCCeeEEE
Q 005773 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE-TALRSMPDIVVATPGRMIDHLRNSM-SVDLDDLAVLI 276 (678)
Q Consensus 199 vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~-~~l~~~~dIiv~Tp~~L~~~l~~~~-~~~l~~i~~lV 276 (678)
+|||+||++|+.|+++.+..++...++.+..++|+....... .....+++|+|+||++|..++.... .+.+.++++||
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lV 180 (245)
T 3dkp_A 101 ALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLV 180 (245)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEE
Confidence 999999999999999999999888888888777654332221 2234578999999999999987653 46788999999
Q ss_pred EeCCccccc---CChHHHHHHHHHHC-CCCccEEEEEeccChhHHHHHHHhcCCCeEEecCC
Q 005773 277 LDEADRLLE---LGFSAEIHELVRLC-PKRRQTMLFSATLTEDVDELIKLSLTKPLRLSADP 334 (678)
Q Consensus 277 vDEah~ll~---~gf~~~i~~i~~~~-~~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~ 334 (678)
|||||++++ .+|...+..++..+ +...|+++||||+++++..+++.++.+|+.+.+..
T Consensus 181 iDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 181 VDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp ESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred EeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 999999998 46888888887765 45789999999999999999999999999887754
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-31 Score=313.60 Aligned_cols=329 Identities=18% Similarity=0.254 Sum_probs=225.6
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 147 KPTPIQAACIPLAL----TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll----~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
.|+|+|.+++.+++ .++++|++++||+|||++.+ .++..+..... ...++||||| ..|+.||.+.+.+++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai-~~i~~l~~~~~--~~~~~LIV~P-~sll~qW~~E~~~~~-- 309 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTV-AFISWLIFARR--QNGPHIIVVP-LSTMPAWLDTFEKWA-- 309 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHH-HHHHHHHHHHS--CCSCEEEECC-TTTHHHHHHHHHHHS--
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHH-HHHHHHHHhcC--CCCCEEEEEC-chHHHHHHHHHHHHC--
Confidence 69999999999887 68899999999999999854 44443332111 1345899999 577889999998875
Q ss_pred CCceeEEEecCCChHHHHHH------------hcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHH
Q 005773 223 TDIRCCLVVGGLSTKMQETA------------LRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSA 290 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~------------l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~ 290 (678)
+++++.+++|+......... ....++|+|+||+.+...... +....|.+|||||||++.+...
T Consensus 310 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~~s-- 384 (800)
T 3mwy_W 310 PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNAES-- 384 (800)
T ss_dssp TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCSSS--
T ss_pred CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCchh--
Confidence 46777777776554333221 223578999999999765432 2233689999999999976432
Q ss_pred HHHHHHHHCCCCccEEEEEeccC----hhHHHHHHHhcCC-----------------------------CeEEecCC---
Q 005773 291 EIHELVRLCPKRRQTMLFSATLT----EDVDELIKLSLTK-----------------------------PLRLSADP--- 334 (678)
Q Consensus 291 ~i~~i~~~~~~~~q~il~SATl~----~~~~~l~~~~~~~-----------------------------p~~~~~~~--- 334 (678)
.....+..+ .....+++|||+- .++..++...... |..+....
T Consensus 385 ~~~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv 463 (800)
T 3mwy_W 385 SLYESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDV 463 (800)
T ss_dssp HHHHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGG
T ss_pred HHHHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhh
Confidence 333344444 3455799999983 2222222222111 11111000
Q ss_pred CCCCCCCceeEEEEEechh-------------------------------------------------------------
Q 005773 335 SAKRPSTLTEEVVRIRRMR------------------------------------------------------------- 353 (678)
Q Consensus 335 ~~~~~~~l~~~~~~~~~~~------------------------------------------------------------- 353 (678)
....| ......+.+....
T Consensus 464 ~~~LP-~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~ 542 (800)
T 3mwy_W 464 EKSLP-SKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKM 542 (800)
T ss_dssp TTTSC-CEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----C
T ss_pred hhccC-CcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccc
Confidence 00011 1111222221100
Q ss_pred -----------hhhHHHHHHHHhhc--cCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC
Q 005773 354 -----------EVNQEAVLLSLCSK--TFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420 (678)
Q Consensus 354 -----------~~~~~~~l~~~~~~--~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~ 420 (678)
...+...+..++.. ..+.++||||+....+..|..+|...|+.+..+||+++..+|..+++.|++|.
T Consensus 543 ~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~ 622 (800)
T 3mwy_W 543 TRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPD 622 (800)
T ss_dssp CSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTT
T ss_pred cHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCC
Confidence 01122223333322 24679999999999999999999999999999999999999999999999865
Q ss_pred c---cEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCc--eEEEEEeeCCc--HHHHHHHHHH
Q 005773 421 V---DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE--GYAVTFVTDND--RSLLKAIAKR 488 (678)
Q Consensus 421 ~---~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~--G~~i~l~~~~d--~~~l~~i~~~ 488 (678)
. .+||+|.+++.|||++.+++||+||+||||..++||+||++|.|+. ..++.|++.+. ..++..+.++
T Consensus 623 ~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K 697 (800)
T 3mwy_W 623 SNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKK 697 (800)
T ss_dssp CSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred CCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHH
Confidence 4 4999999999999999999999999999999999999999999964 66777888874 3444444443
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=1.8e-30 Score=297.91 Aligned_cols=323 Identities=16% Similarity=0.189 Sum_probs=218.2
Q ss_pred CCcHHHHHHHHHHh---------cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCC-CCCeEEEEEcCcHHHHHHHHHHH
Q 005773 147 KPTPIQAACIPLAL---------TGRDICGSAITGSGKTAAFALPTLERLLYRPKR-IPAIRVLILTPTRELAVQVHSMI 216 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll---------~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~vLIl~Ptr~La~Q~~~~~ 216 (678)
.|+|+|.+++.++. .++.+|++++||+|||++++..+...+...+.. ....++|||+|+ +|+.||.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 59999999999985 356789999999999998555444433332221 123469999997 7889999999
Q ss_pred HHHhhcCCceeEEEecCCChHHHH---HHhc-----CCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCCh
Q 005773 217 EKIAQFTDIRCCLVVGGLSTKMQE---TALR-----SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGF 288 (678)
Q Consensus 217 ~~l~~~~~~~v~~~~g~~~~~~~~---~~l~-----~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf 288 (678)
.+++.. .+.+..++++....... ..+. ..++|+|+||+.+..... .+....+.+||+||||++.+...
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn~~~ 209 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKNSDN 209 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCTTCH
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCChhh
Confidence 988754 45566666664332211 1111 247899999999976543 23345789999999999987542
Q ss_pred HHHHHHHHHHCCCCccEEEEEeccChh-H---HHHH---------------HHh--------------------------
Q 005773 289 SAEIHELVRLCPKRRQTMLFSATLTED-V---DELI---------------KLS-------------------------- 323 (678)
Q Consensus 289 ~~~i~~i~~~~~~~~q~il~SATl~~~-~---~~l~---------------~~~-------------------------- 323 (678)
.....+..+. ....+++|||+-.+ + ..++ ..+
T Consensus 210 --~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 210 --QTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp --HHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred --HHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 2223333333 45689999998422 0 0000 000
Q ss_pred ---cCCCeEEecC---CCCCCCCCceeEEEEEech---------------------------------------------
Q 005773 324 ---LTKPLRLSAD---PSAKRPSTLTEEVVRIRRM--------------------------------------------- 352 (678)
Q Consensus 324 ---~~~p~~~~~~---~~~~~~~~l~~~~~~~~~~--------------------------------------------- 352 (678)
+-.|..+.-. .....|.. ....+.+...
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k-~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVK-IEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCE-EEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCc-eEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 0001111000 00011111 1111111100
Q ss_pred ------------------------------hhhhHHHHHHHHhh---ccCCceEEEEeccHHHHHHHHHHHhhcCCceee
Q 005773 353 ------------------------------REVNQEAVLLSLCS---KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAE 399 (678)
Q Consensus 353 ------------------------------~~~~~~~~l~~~~~---~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~ 399 (678)
....+...+..++. ...+.++||||++...++.+..+|...++.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 00111112222221 234689999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCcc---EEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCc--eEEEEEe
Q 005773 400 LHGNLTQAQRLEALELFRKQHVD---FLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE--GYAVTFV 474 (678)
Q Consensus 400 lhg~l~~~~R~~~l~~F~~g~~~---vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~--G~~i~l~ 474 (678)
+||++++.+|..+++.|++|... +||+|.++++|||++++++||+||+|||+..|.|++||++|.|+. ..+|.|+
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 99999999999999999998754 899999999999999999999999999999999999999999965 4666678
Q ss_pred eCCc
Q 005773 475 TDND 478 (678)
Q Consensus 475 ~~~d 478 (678)
+.+.
T Consensus 526 ~~~t 529 (644)
T 1z3i_X 526 STGT 529 (644)
T ss_dssp ETTS
T ss_pred ECCC
Confidence 8774
No 73
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.97 E-value=1.9e-31 Score=305.77 Aligned_cols=181 Identities=20% Similarity=0.244 Sum_probs=139.4
Q ss_pred CCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhh-ccCCceEEEEecc
Q 005773 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCS-KTFTSKVIIFSGT 379 (678)
Q Consensus 301 ~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~vLVF~~s 379 (678)
...|+++||||+++..... ....+.... ++..+....+.+..... .....+..+.. ...+.++||||+|
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~-----r~~~l~~p~i~v~~~~~-~~~~Ll~~l~~~~~~~~~vlVf~~t 448 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQII-----RPTGLLDPLVRVKPTEN-QILDLMEGIRERAARGERTLVTVLT 448 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECS-----CTTCCCCCEEEEECSTT-HHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeee-----ccCCCCCCeEEEecccc-hHHHHHHHHHHHHhcCCEEEEEECC
Confidence 4678999999998654221 111122211 22222223333333221 11222222222 1246799999999
Q ss_pred HHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCC-----CCChhHH
Q 005773 380 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC-----PRDLTSY 454 (678)
Q Consensus 380 ~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~-----p~s~~~y 454 (678)
+..++.++.+|...++.+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|+|++||+|+. |.++.+|
T Consensus 449 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~ 528 (664)
T 1c4o_A 449 VRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 528 (664)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHH
T ss_pred HHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCc
Q 005773 455 VHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSK 492 (678)
Q Consensus 455 iQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~ 492 (678)
+||+|||||.| .|.|++|+++.+..+.+.|.+....+
T Consensus 529 iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~~~~~r 565 (664)
T 1c4o_A 529 IQTIGRAARNA-RGEVWLYADRVSEAMQRAIEETNRRR 565 (664)
T ss_dssp HHHHGGGTTST-TCEEEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHHHHHHH
Confidence 99999999985 89999999999998888887765433
No 74
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=2.2e-30 Score=306.72 Aligned_cols=335 Identities=17% Similarity=0.131 Sum_probs=220.5
Q ss_pred HHHHHHHHHcC-------CCCCcHHHHHHHHHHhc--------------CCCEEEEcCCCchhhhhhhhchhHHHhcCCC
Q 005773 134 RPLLRACEALG-------YSKPTPIQAACIPLALT--------------GRDICGSAITGSGKTAAFALPTLERLLYRPK 192 (678)
Q Consensus 134 ~~l~~~l~~~g-------~~~~~~iQ~~~i~~ll~--------------g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~ 192 (678)
+.++..+..+- ...|+|+|..|++.++. +++++++++||||||+++ ++++..+. ..
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~-~~- 327 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLAT-EL- 327 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHT-TC-
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHH-hc-
Confidence 44555565542 23499999999999876 368999999999999996 77775443 21
Q ss_pred CCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh-cCCCCEEEECchHHHHHHhccCc-cCCC
Q 005773 193 RIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL-RSMPDIVVATPGRMIDHLRNSMS-VDLD 270 (678)
Q Consensus 193 ~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l-~~~~dIiv~Tp~~L~~~l~~~~~-~~l~ 270 (678)
....++|||+|+++|+.|+.+.+..+... .+.++.+.......+ ...++|+|+||++|..++..... ..+.
T Consensus 328 -~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~ 400 (1038)
T 2w00_A 328 -DFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYN 400 (1038)
T ss_dssp -TTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGG
T ss_pred -CCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccc
Confidence 12458999999999999999998876532 123444444444555 35689999999999988765321 2355
Q ss_pred CeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEeccChhH--------HH-------------HHHHhcCCCeE
Q 005773 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATLTEDV--------DE-------------LIKLSLTKPLR 329 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~--------~~-------------l~~~~~~~p~~ 329 (678)
.+.+||+||||++... .....+...+| +.++++|||||.... .. .+......|+.
T Consensus 401 ~~~lvIiDEAHrs~~~---~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~ 476 (1038)
T 2w00_A 401 QQVVFIFDECHRSQFG---EAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFK 476 (1038)
T ss_dssp SCEEEEEESCCTTHHH---HHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEE
T ss_pred cccEEEEEccchhcch---HHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeE
Confidence 7889999999997642 23455666665 479999999997432 11 11111222222
Q ss_pred EecCCCCCCCCCceeEEEEEe-----------c-hhhhhHHHHHHHHh----hc-------cCCceEEEEeccHHHHHHH
Q 005773 330 LSADPSAKRPSTLTEEVVRIR-----------R-MREVNQEAVLLSLC----SK-------TFTSKVIIFSGTKQAAHRL 386 (678)
Q Consensus 330 ~~~~~~~~~~~~l~~~~~~~~-----------~-~~~~~~~~~l~~~~----~~-------~~~~~vLVF~~s~~~~~~l 386 (678)
+..... .+ .+........ . ........++..++ .. ..+.++||||+|+..|..+
T Consensus 477 v~y~~v--~~-~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~ 553 (1038)
T 2w00_A 477 VDYNDV--RP-QFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAY 553 (1038)
T ss_dssp EEECCC--CG-GGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHH
T ss_pred EEEEec--cc-hhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHH
Confidence 211100 00 0000000000 0 00000011111111 11 1346899999999999999
Q ss_pred HHHHhhcC------------Cce-eeccCC----------C----------CH---------------------------
Q 005773 387 KILFGLAA------------LKA-AELHGN----------L----------TQ--------------------------- 406 (678)
Q Consensus 387 ~~~L~~~~------------~~~-~~lhg~----------l----------~~--------------------------- 406 (678)
+..|...+ +++ ..+||. + ++
T Consensus 554 ~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~ 633 (1038)
T 2w00_A 554 YATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNG 633 (1038)
T ss_dssp HHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHH
T ss_pred HHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchh
Confidence 99987654 555 445542 2 22
Q ss_pred --HHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCc----eEEEEEeeCCcHH
Q 005773 407 --AQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGRE----GYAVTFVTDNDRS 480 (678)
Q Consensus 407 --~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~----G~~i~l~~~~d~~ 480 (678)
..|..+++.|++|+++|||+|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+.. |.++.|+. ....
T Consensus 634 ~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~-~~~~ 711 (1038)
T 2w00_A 634 FQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD-LERS 711 (1038)
T ss_dssp HHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC-CHHH
T ss_pred hhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc-cHHH
Confidence 247889999999999999999999999999999 788999999999999999999997753 77776664 3344
Q ss_pred HHHHHHH
Q 005773 481 LLKAIAK 487 (678)
Q Consensus 481 ~l~~i~~ 487 (678)
+..++..
T Consensus 712 l~~Al~~ 718 (1038)
T 2w00_A 712 TIDAITL 718 (1038)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4445543
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.97 E-value=5.5e-30 Score=293.53 Aligned_cols=181 Identities=20% Similarity=0.288 Sum_probs=139.4
Q ss_pred CCccEEEEEeccChhHHHHHHHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhc-cCCceEEEEecc
Q 005773 301 KRRQTMLFSATLTEDVDELIKLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSK-TFTSKVIIFSGT 379 (678)
Q Consensus 301 ~~~q~il~SATl~~~~~~l~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~vLVF~~s 379 (678)
..+|+++||||+++..... ....+.... ++..+....+.+..... .....+..+... ..+.++||||+|
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~-----r~~~l~~p~i~v~~~~~-~~~~Ll~~l~~~~~~~~~vlVf~~t 454 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQII-----RPTGLLDPLIDVRPIEG-QIDDLIGEIQARIERNERVLVTTLT 454 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECC-----CTTCCCCCEEEEECSTT-HHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeee-----cccCCCCCeEEEecccc-hHHHHHHHHHHHHhcCCeEEEEECC
Confidence 4689999999998654322 112222222 12222222233333221 122222333222 246799999999
Q ss_pred HHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCC-----CCChhHH
Q 005773 380 KQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYAC-----PRDLTSY 454 (678)
Q Consensus 380 ~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~-----p~s~~~y 454 (678)
+..++.++.+|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|+|++||+++. |.+..+|
T Consensus 455 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~ 534 (661)
T 2d7d_A 455 KKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 534 (661)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCc
Q 005773 455 VHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSK 492 (678)
Q Consensus 455 iQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~ 492 (678)
+||+|||||. ..|.|++|+++.+..+.+.|.+....+
T Consensus 535 iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~~~r 571 (661)
T 2d7d_A 535 IQTIGRAARN-AEGRVIMYADKITKSMEIAINETKRRR 571 (661)
T ss_dssp HHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 9999999997 699999999999988888777655433
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=6.3e-27 Score=263.75 Aligned_cols=131 Identities=21% Similarity=0.246 Sum_probs=113.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 143 LGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
+|+ +|+++|..++|.++.|+ |+.+.||||||++|.+|++...+. +..|+|++||++||.|.++++..++.+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~------G~qv~VvTPTreLA~Qdae~m~~l~~~ 146 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT------GKGVHVVTVNDYLARRDAEWMGPVYRG 146 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT------CSCCEEEESSHHHHHHHHHHHHHHHHT
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 799 89999999999999998 999999999999999999644432 335899999999999999999999999
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHH-HHHHhccC-----ccCCC---CeeEEEEeCCcccc
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRM-IDHLRNSM-----SVDLD---DLAVLILDEADRLL 284 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L-~~~l~~~~-----~~~l~---~i~~lVvDEah~ll 284 (678)
.++++++++|+.+...... ..++||+|+||++| +++|.... .+.+. .+.++||||||.|+
T Consensus 147 lGLsv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 147 LGLSVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TTCCEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred cCCeEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999999988654443 34589999999999 89888753 24577 89999999999976
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=7.9e-26 Score=213.68 Aligned_cols=154 Identities=33% Similarity=0.560 Sum_probs=140.2
Q ss_pred CCCCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHh
Q 005773 338 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417 (678)
Q Consensus 338 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~ 417 (678)
.+..+.|.++.+. ...+...+..++....++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|+
T Consensus 6 ~~~~i~~~~~~~~---~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 6 TTRNIEHAVIQVR---EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp CCCCEEEEEEECC---GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccceEEEEECC---hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 3456777777664 3556777777777777789999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccc
Q 005773 418 KQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLK 494 (678)
Q Consensus 418 ~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~ 494 (678)
+|..+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+.|.+++|+++.+..+++.+.+..+.++.
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 159 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQ 159 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCE
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776654
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.6e-25 Score=216.88 Aligned_cols=165 Identities=32% Similarity=0.476 Sum_probs=127.7
Q ss_pred HHhcCCCeEEecCCCCCCCCCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeec
Q 005773 321 KLSLTKPLRLSADPSAKRPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAEL 400 (678)
Q Consensus 321 ~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~l 400 (678)
+.++.+|..+.+.........+.|.++.+. ...+...+..++... ++++||||+++..++.++..|...++.+..+
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~---~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVK---EEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp -------------------CCSEEEEEECC---GGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcC---hHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 456778888877666556667888777664 345666676666654 5689999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCC-cH
Q 005773 401 HGNLTQAQRLEALELFRKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DR 479 (678)
Q Consensus 401 hg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~-d~ 479 (678)
||+|++.+|..+++.|++|+..|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 67
Q ss_pred HHHHHHHHHh
Q 005773 480 SLLKAIAKRA 489 (678)
Q Consensus 480 ~~l~~i~~~~ 489 (678)
.+++.+.+.+
T Consensus 165 ~~~~~l~~~l 174 (191)
T 2p6n_A 165 SVLMDLKALL 174 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.4e-25 Score=212.96 Aligned_cols=157 Identities=27% Similarity=0.429 Sum_probs=137.8
Q ss_pred CCCCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHh
Q 005773 338 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFR 417 (678)
Q Consensus 338 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~ 417 (678)
.+..+.|.++.+.. ...+...+..++....++++||||+++..+..++..|...++.+..+||+|++.+|..+++.|+
T Consensus 4 ~~~~i~q~~~~~~~--~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 4 TLNNIRQYYVLCEH--RKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp CBCCEEEEEEECSS--HHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHH
T ss_pred ccCCceEEEEEcCC--hHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 34567787776643 2346677777777777889999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEcccccccCCCCCccEEEEcCCC------CChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcC
Q 005773 418 KQHVDFLIATDVAARGLDIIGVQTVINYACP------RDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGS 491 (678)
Q Consensus 418 ~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p------~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~ 491 (678)
+|..+|||||+++++|+|+|++++||+||+| .++..|+||+||+||.|+.|.+++|+++.+...+..+.+.++.
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999999998887
Q ss_pred ccchh
Q 005773 492 KLKSR 496 (678)
Q Consensus 492 ~~~~~ 496 (678)
.+...
T Consensus 162 ~~~~~ 166 (175)
T 2rb4_A 162 SIKQL 166 (175)
T ss_dssp CCEEE
T ss_pred ccccc
Confidence 76543
No 80
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=4.5e-25 Score=217.66 Aligned_cols=146 Identities=34% Similarity=0.469 Sum_probs=133.8
Q ss_pred hhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccccccc
Q 005773 354 EVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARG 433 (678)
Q Consensus 354 ~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~G 433 (678)
...+...+..++....++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 35667777777777778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccchhhhh
Q 005773 434 LDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVA 499 (678)
Q Consensus 434 lDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~ 499 (678)
+|+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...++.+.+..+..+.....+
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 160 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 160 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCC
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCC
Confidence 999999999999999999999999999999999999999999999999999999988877654443
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=2.5e-25 Score=212.04 Aligned_cols=155 Identities=28% Similarity=0.462 Sum_probs=138.4
Q ss_pred CCCceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhc
Q 005773 339 PSTLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRK 418 (678)
Q Consensus 339 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~ 418 (678)
+..+.|.++.+. ...+...+..++....++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++
T Consensus 3 ~~~i~q~~~~~~---~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 79 (172)
T 1t5i_A 3 LHGLQQYYVKLK---DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 79 (172)
T ss_dssp --CCEEEEEECC---GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECC---hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 345677777654 34567777777777777899999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCC-cHHHHHHHHHHhcCccchh
Q 005773 419 QHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDN-DRSLLKAIAKRAGSKLKSR 496 (678)
Q Consensus 419 g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~-d~~~l~~i~~~~~~~~~~~ 496 (678)
|..+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...++.+.+..+..+...
T Consensus 80 g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (172)
T 1t5i_A 80 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISEL 158 (172)
T ss_dssp TSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEEC
T ss_pred CCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhC
Confidence 99999999999999999999999999999999999999999999999999999999876 5678899998888776643
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.93 E-value=5.2e-25 Score=208.51 Aligned_cols=153 Identities=27% Similarity=0.476 Sum_probs=133.2
Q ss_pred CceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCC
Q 005773 341 TLTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQH 420 (678)
Q Consensus 341 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~ 420 (678)
.+.|.++.+.. ...+...+..++....++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.
T Consensus 3 ~i~~~~~~~~~--~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 3 GIKQFYVNVEE--EEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp -CEEEEEEEES--GGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcEEEEEECCc--chhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 46676766643 2236677777777777889999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccch
Q 005773 421 VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKS 495 (678)
Q Consensus 421 ~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~ 495 (678)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.++..+..
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEE 155 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEE
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999887766654
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.92 E-value=1.4e-24 Score=209.45 Aligned_cols=150 Identities=35% Similarity=0.541 Sum_probs=120.4
Q ss_pred CCCCceeEEEEEechhhhhHHHHHHHHhhcc-CCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHH
Q 005773 338 RPSTLTEEVVRIRRMREVNQEAVLLSLCSKT-FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF 416 (678)
Q Consensus 338 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F 416 (678)
.+..+.|.++.+.. ..+...+..++... .+.++||||+++..+..++..|...++.+..+||+|++.+|..+++.|
T Consensus 16 ~~~~i~q~~~~v~~---~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 16 TSENITQKVVWVEE---SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp CCTTEEEEEEECCG---GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCceEEEEEeCc---HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 45678888777643 45666666666654 568999999999999999999999999999999999999999999999
Q ss_pred hcCCccEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhc
Q 005773 417 RKQHVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAG 490 (678)
Q Consensus 417 ~~g~~~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~ 490 (678)
++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+...++.+.+.++
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 166 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 166 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888776553
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=5.9e-24 Score=219.79 Aligned_cols=155 Identities=32% Similarity=0.456 Sum_probs=134.7
Q ss_pred ceeEEEEEechhhhhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCc
Q 005773 342 LTEEVVRIRRMREVNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHV 421 (678)
Q Consensus 342 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~ 421 (678)
+.+.++.+. ...+...+..++....++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..
T Consensus 3 v~~~~i~~~---~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAP---VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECC---SSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECC---HHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 344455443 34567777777776668999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcccccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccchhhhh
Q 005773 422 DFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVA 499 (678)
Q Consensus 422 ~vLvaT~~~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~~~ 499 (678)
+|||||+++++|+|+|+|++||+|++|+++..|+||+|||||.|+.|.|++|+++.+...++.+.+..+..+.....+
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCC
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877654433
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.83 E-value=2.6e-25 Score=211.61 Aligned_cols=143 Identities=35% Similarity=0.586 Sum_probs=129.8
Q ss_pred hhHHHHHHHHhhccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccC
Q 005773 355 VNQEAVLLSLCSKTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL 434 (678)
Q Consensus 355 ~~~~~~l~~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl 434 (678)
..+...+..++....++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|+
T Consensus 15 ~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gi 94 (170)
T 2yjt_D 15 EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGI 94 (170)
Confidence 34555666666666678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHhcCccchhh
Q 005773 435 DIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRI 497 (678)
Q Consensus 435 Di~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~~~~~~~~~ 497 (678)
|+|++++||+|++|+++..|+||+||+||.|+.|.+++|+++.+...++.+.+..+..+....
T Consensus 95 d~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (170)
T 2yjt_D 95 DIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 157 (170)
Confidence 999999999999999999999999999999999999999999999999888887766665433
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.89 E-value=7.7e-24 Score=209.01 Aligned_cols=167 Identities=21% Similarity=0.182 Sum_probs=121.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHH-HHHHHHHHhhc
Q 005773 144 GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ-VHSMIEKIAQF 222 (678)
Q Consensus 144 g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q-~~~~~~~l~~~ 222 (678)
+...|+++|.++++.++.++++++.+|||+|||++|++++++.+........++++||++|+++|+.| +.+.+..+...
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 44579999999999999999999999999999999999998876543222235679999999999999 78888887654
Q ss_pred CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCc-----cCCCCeeEEEEeCCcccccCChHHHH-HHHH
Q 005773 223 TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMS-----VDLDDLAVLILDEADRLLELGFSAEI-HELV 296 (678)
Q Consensus 223 ~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~-----~~l~~i~~lVvDEah~ll~~gf~~~i-~~i~ 296 (678)
++.+..+.|+.........+...++|+|+||+.|...+..... ..+.++.+|||||||++...++...+ ..++
T Consensus 110 -~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~ 188 (216)
T 3b6e_A 110 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 188 (216)
T ss_dssp -TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHH
T ss_pred -CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHH
Confidence 6788888887655444444445689999999999998876432 55778999999999999876655443 2332
Q ss_pred HHC-------------CCCccEEEEEec
Q 005773 297 RLC-------------PKRRQTMLFSAT 311 (678)
Q Consensus 297 ~~~-------------~~~~q~il~SAT 311 (678)
... ....++|++|||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 189 MQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHhcccccccccccCCCCcceEEEeecC
Confidence 221 156899999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=3.3e-22 Score=224.63 Aligned_cols=128 Identities=18% Similarity=0.162 Sum_probs=86.7
Q ss_pred cCCCCCcHHHHHHHH----HHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 005773 143 LGYSKPTPIQAACIP----LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (678)
Q Consensus 143 ~g~~~~~~iQ~~~i~----~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 218 (678)
.|| .|+|+|.+++. .+..|+++++.+|||+|||++|++|++.. .++++|++||++|+.|+.+.+..
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---------~~~~~~~~~t~~l~~q~~~~~~~ 73 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---------KKKVLIFTRTHSQLDSIYKNAKL 73 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---------TCEEEEEESCHHHHHHHHHHHGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---------CCcEEEEcCCHHHHHHHHHHHHh
Confidence 467 69999999865 45678999999999999999999999764 46899999999999999987766
Q ss_pred HhhcCCceeEEEecCCCh--------H------------------------HHH---------------HHhcCCCCEEE
Q 005773 219 IAQFTDIRCCLVVGGLST--------K------------------------MQE---------------TALRSMPDIVV 251 (678)
Q Consensus 219 l~~~~~~~v~~~~g~~~~--------~------------------------~~~---------------~~l~~~~dIiv 251 (678)
+ ++++..+.|.... . ..+ ......++|||
T Consensus 74 l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV 149 (540)
T 2vl7_A 74 L----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIA 149 (540)
T ss_dssp G----TCCEEEC---------------------------------------------------------CTTGGGCSEEE
T ss_pred c----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEE
Confidence 3 4444444432210 0 000 01123479999
Q ss_pred ECchHHHHHHhccCcc------CCCCeeEEEEeCCcccc
Q 005773 252 ATPGRMIDHLRNSMSV------DLDDLAVLILDEADRLL 284 (678)
Q Consensus 252 ~Tp~~L~~~l~~~~~~------~l~~i~~lVvDEah~ll 284 (678)
+||..|++.+...... .+....++||||||.|.
T Consensus 150 ~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 150 MTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9999998755431111 23567899999999974
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=196.96 Aligned_cols=183 Identities=16% Similarity=0.212 Sum_probs=133.6
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHH
Q 005773 133 SRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQV 212 (678)
Q Consensus 133 ~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~ 212 (678)
++.+.+.+.......++++|.++++.+..|++++++|+||||||+++.+++++.+..... ....++++++|+++|+.|+
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~la~q~ 125 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-AAECNIVVTQPRRISAVSV 125 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-GGGCEEEEEESSHHHHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-CCceEEEEeccchHHHHHH
Confidence 333333333334445899999999999999999999999999999999999887765443 2356899999999999999
Q ss_pred HHHHHHHhhc-CCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCccc-ccCChH-
Q 005773 213 HSMIEKIAQF-TDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRL-LELGFS- 289 (678)
Q Consensus 213 ~~~~~~l~~~-~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~l-l~~gf~- 289 (678)
.+.+...... .+..++....... ......++|+|+|||+|++++.. .+.++++|||||||++ ++.+|.
T Consensus 126 ~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 126 AERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp HHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHH
T ss_pred HHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHH
Confidence 8887764332 2333333222111 11124578999999999999876 3789999999999996 677777
Q ss_pred HHHHHHHHHCCCCccEEEEEeccChhHHHHHHHhcCCCe
Q 005773 290 AEIHELVRLCPKRRQTMLFSATLTEDVDELIKLSLTKPL 328 (678)
Q Consensus 290 ~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~~~~p~ 328 (678)
..+..++... +..|+++||||++.+. +...+...|+
T Consensus 197 ~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 197 VVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 4566666665 4789999999999876 4444444443
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.86 E-value=5.3e-20 Score=207.40 Aligned_cols=132 Identities=20% Similarity=0.064 Sum_probs=100.8
Q ss_pred CCCCCcHHHHHHHHH----HhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 144 GYSKPTPIQAACIPL----ALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 144 g~~~~~~iQ~~~i~~----ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
|| .|+|.|.+.+.. +..|+++++.+|||+|||++|++|++.. ++++||++||++|+.|+.+.+..+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~---------~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV---------KPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH---------CSEEEEEESSGGGHHHHHHHHTTC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC---------CCeEEEEcCCHHHHHHHHHHHHHH
Confidence 45 589999987764 5578999999999999999999999972 468999999999999999999988
Q ss_pred hhcCCceeEEEecCCCh---------------------------------HHHH------------------HHhcCCCC
Q 005773 220 AQFTDIRCCLVVGGLST---------------------------------KMQE------------------TALRSMPD 248 (678)
Q Consensus 220 ~~~~~~~v~~~~g~~~~---------------------------------~~~~------------------~~l~~~~d 248 (678)
....++++..+.|.... .... ......++
T Consensus 71 ~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ad 150 (551)
T 3crv_A 71 REKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKAD 150 (551)
T ss_dssp CCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCS
T ss_pred hhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCC
Confidence 77777888877763210 1111 12234689
Q ss_pred EEEECchHHHHHHhccCccCCCCeeEEEEeCCccccc
Q 005773 249 IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLE 285 (678)
Q Consensus 249 Iiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~ 285 (678)
|||+||..|++..............+|||||||.|.+
T Consensus 151 IVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 151 VIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 9999999999876443211224678999999998654
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.84 E-value=5.6e-21 Score=197.08 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=124.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (678)
.|+++|.++++.++.+++.+++++||+|||+++++++...+... ..++|||+||++|+.|+++.+.++.......
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-----~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~ 187 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-----EGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-----SSEEEEECSSHHHHHHHHHHHHHHTSCCGGG
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-----CCeEEEEECCHHHHHHHHHHHHHhcccccce
Confidence 69999999999999998999999999999999988777665421 2379999999999999999999987666677
Q ss_pred eEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEE
Q 005773 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (678)
Q Consensus 227 v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~i 306 (678)
+..++++..... .....++|+|+||+.|.... ...+.++++|||||||++.+ ..+..++..+....+++
T Consensus 188 ~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l 256 (282)
T 1rif_A 188 IKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKF 256 (282)
T ss_dssp EEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEE
T ss_pred EEEEeCCCcchh---hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEE
Confidence 788877765432 23356899999999875432 23467899999999999974 35667777777789999
Q ss_pred EEEeccChhHH
Q 005773 307 LFSATLTEDVD 317 (678)
Q Consensus 307 l~SATl~~~~~ 317 (678)
++|||+++...
T Consensus 257 ~lSATp~~~~~ 267 (282)
T 1rif_A 257 GLSGSLRDGKA 267 (282)
T ss_dssp EECSSCCTTST
T ss_pred EEeCCCCCcch
Confidence 99999986543
No 91
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.77 E-value=1.5e-18 Score=177.17 Aligned_cols=124 Identities=12% Similarity=0.209 Sum_probs=96.2
Q ss_pred hhHHHHHHHHhhcc--CCceEEEEeccHHHHHHHHHHHhhc-CCceeeccCCCCHHHHHHHHHHHhcC-Ccc-EEEEccc
Q 005773 355 VNQEAVLLSLCSKT--FTSKVIIFSGTKQAAHRLKILFGLA-ALKAAELHGNLTQAQRLEALELFRKQ-HVD-FLIATDV 429 (678)
Q Consensus 355 ~~~~~~l~~~~~~~--~~~~vLVF~~s~~~~~~l~~~L~~~-~~~~~~lhg~l~~~~R~~~l~~F~~g-~~~-vLvaT~~ 429 (678)
..+...+..++... .+.++||||++...+..+..+|... |+.+..+||++++.+|..+++.|++| ... +|++|++
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 44555555555443 5789999999999999999999885 99999999999999999999999999 666 7899999
Q ss_pred ccccCCCCCccEEEEcCCCCChhHHHHHHhhcccCCCceE--EEEEeeCCc
Q 005773 430 AARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY--AVTFVTDND 478 (678)
Q Consensus 430 ~~~GlDi~~v~~VI~~d~p~s~~~yiQr~GRagR~g~~G~--~i~l~~~~d 478 (678)
+++|||++++++||+||+||||..|+||+||++|.|+.+. ++.|++.+.
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 9999999999999999999999999999999999997654 567788775
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.76 E-value=4.2e-18 Score=170.69 Aligned_cols=137 Identities=20% Similarity=0.184 Sum_probs=109.7
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (678)
.|+++|.++++.++.+++++++++||+|||.+++.++... +.++||++|+++|+.|+++.+..+ ++.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~liv~P~~~L~~q~~~~~~~~----~~~ 159 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGIF----GEE 159 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---------CSCEEEEESSHHHHHHHHHHHGGG----CGG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHhC----CCC
Confidence 6999999999999999999999999999999977766542 346899999999999999888873 666
Q ss_pred -eEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccE
Q 005773 227 -CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQT 305 (678)
Q Consensus 227 -v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~ 305 (678)
+..+.|+.. ...+|+|+||+.+...+... ...+++|||||||++.+..+.. ++..++ ..++
T Consensus 160 ~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~l~~~~~~~----i~~~~~-~~~~ 221 (237)
T 2fz4_A 160 YVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APFR 221 (237)
T ss_dssp GEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSCCCTTTHHH----HHHTCC-CSEE
T ss_pred eEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCccCCChHHHH----HHHhcc-CCEE
Confidence 777777653 25689999999987765431 2468899999999998876543 444444 6789
Q ss_pred EEEEeccCh
Q 005773 306 MLFSATLTE 314 (678)
Q Consensus 306 il~SATl~~ 314 (678)
+++|||+..
T Consensus 222 l~LSATp~r 230 (237)
T 2fz4_A 222 LGLTATFER 230 (237)
T ss_dssp EEEEESCC-
T ss_pred EEEecCCCC
Confidence 999999975
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.75 E-value=6.6e-17 Score=183.67 Aligned_cols=81 Identities=23% Similarity=0.211 Sum_probs=67.0
Q ss_pred CCcHHHHHHHH----HHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 147 KPTPIQAACIP----LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 147 ~~~~iQ~~~i~----~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
.|+|.|.+.+. .+..|+++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+..+...
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-----~~kvli~t~T~~l~~Qi~~el~~l~~~ 77 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-----KLKVLYLVRTNSQEEQVIKELRSLSST 77 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-----CCeEEEECCCHHHHHHHHHHHHHHhhc
Confidence 48999988875 556799999999999999999999999987542 458999999999999999999998776
Q ss_pred CCceeEEEec
Q 005773 223 TDIRCCLVVG 232 (678)
Q Consensus 223 ~~~~v~~~~g 232 (678)
.++++..+.|
T Consensus 78 ~~~~~~~l~g 87 (620)
T 4a15_A 78 MKIRAIPMQG 87 (620)
T ss_dssp SCCCEEECCC
T ss_pred cCeEEEEEEC
Confidence 6666655554
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.78 E-value=1.2e-08 Score=115.78 Aligned_cols=146 Identities=21% Similarity=0.252 Sum_probs=91.3
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchhh--hhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 005773 149 TPIQAACIPLALTGRDICGSAITGSGKT--AAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (678)
Q Consensus 149 ~~iQ~~~i~~ll~g~dvl~~a~TGsGKT--~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (678)
++.|+.+++.++.++++++.|++|+||| ++++++++..+.. ..+.++++++||..+|.++.+.+..+....++.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~----~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD----GERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS----SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh----cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 7899999999999999999999999999 5556666654421 124579999999999999988887765554432
Q ss_pred eEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEE
Q 005773 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (678)
Q Consensus 227 v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~i 306 (678)
.....+ ... . ...-..++-.+|+... +... ......+++||||||+ |++ ...+..++..++...|+|
T Consensus 227 ~~~~~~-~~~--~---~~Tih~ll~~~~~~~~--~~~~-~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~li 293 (608)
T 1w36_D 227 DEQKKR-IPE--D---ASTLHRLLGAQPGSQR--LRHH-AGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARVI 293 (608)
T ss_dssp SCCCCS-CSC--C---CBTTTSCC-------------C-TTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEEE
T ss_pred HHHHhc-cch--h---hhhhHhhhccCCCchH--HHhc-cCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEEE
Confidence 111100 000 0 0000112222333210 1111 1112378899999999 554 455677888889889998
Q ss_pred EEEec
Q 005773 307 LFSAT 311 (678)
Q Consensus 307 l~SAT 311 (678)
++.=.
T Consensus 294 LvGD~ 298 (608)
T 1w36_D 294 FLGDR 298 (608)
T ss_dssp EEECT
T ss_pred EEcch
Confidence 88754
No 95
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.30 E-value=3.6e-06 Score=86.08 Aligned_cols=123 Identities=11% Similarity=0.070 Sum_probs=90.5
Q ss_pred hhhHHHHHHHHhh--ccCCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccccc
Q 005773 354 EVNQEAVLLSLCS--KTFTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA 431 (678)
Q Consensus 354 ~~~~~~~l~~~~~--~~~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~ 431 (678)
.+.+..++..++. ...+++||||+++..+.+.+..+|...++++..+.|.....++ + -.++...|.+.|..++
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-A----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-h----cccCCceEEEEECCCC
Confidence 4556666655554 3357899999999999999999999999999999998654321 1 1245555656577777
Q ss_pred ccCC-----CCCccEEEEcCCCCChhHH-HHHHhhcccCC----CceEEEEEeeCCcHHH
Q 005773 432 RGLD-----IIGVQTVINYACPRDLTSY-VHRVGRTARAG----REGYAVTFVTDNDRSL 481 (678)
Q Consensus 432 ~GlD-----i~~v~~VI~~d~p~s~~~y-iQr~GRagR~g----~~G~~i~l~~~~d~~~ 481 (678)
-|+| +...++||.||..||+..- +|.+-|++|.| ++-.+|.|++.+...-
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 7776 6889999999999999986 99999999973 4668999999887553
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.03 E-value=3.3e-05 Score=87.79 Aligned_cols=69 Identities=17% Similarity=0.117 Sum_probs=55.8
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 005773 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (678)
Q Consensus 145 ~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 218 (678)
+..+++.|..++..++.+.-+++.||+|+|||.+ +..++..+... .+.++|+++||...+.++.+.+..
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~-~~~~i~~l~~~----~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ----GNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHH-HHHHHHHHHTS----SSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHH-HHHHHHHHHHc----CCCeEEEEeCcHHHHHHHHHHHHh
Confidence 4568999999999999887889999999999987 45555555532 245799999999999998887765
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.03 E-value=1.6e-05 Score=87.09 Aligned_cols=138 Identities=15% Similarity=0.169 Sum_probs=80.4
Q ss_pred HcCCCCCcHHHHHHHHHHhcC----C-CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHH
Q 005773 142 ALGYSKPTPIQAACIPLALTG----R-DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMI 216 (678)
Q Consensus 142 ~~g~~~~~~iQ~~~i~~ll~g----~-dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 216 (678)
-+.|..+++-|..++..++.. + .+++.|+.|||||.+ +..++..+..... ..+++++||...+..+.+.+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~~----~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTGE----TGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTTC----CCEEEEESSHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcCC----ceEEEecCcHHHHHHHHhhh
Confidence 356889999999999977543 3 888999999999975 5566666654322 35899999998877655443
Q ss_pred HHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHH
Q 005773 217 EKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELV 296 (678)
Q Consensus 217 ~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~ 296 (678)
+..+..++. .+. +...+.+... .+.......+..+++|||||++.+. ...+..++
T Consensus 95 -------~~~~~T~h~---------~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~ 149 (459)
T 3upu_A 95 -------GKEASTIHS---------ILK----INPVTYEENV-LFEQKEVPDLAKCRVLICDEVSMYD----RKLFKILL 149 (459)
T ss_dssp -------SSCEEEHHH---------HHT----EEEEECSSCE-EEEECSCCCCSSCSEEEESCGGGCC----HHHHHHHH
T ss_pred -------ccchhhHHH---------Hhc----cCcccccccc-hhcccccccccCCCEEEEECchhCC----HHHHHHHH
Confidence 111111110 000 0000000000 0000112345678899999999653 23445566
Q ss_pred HHCCCCccEEEEE
Q 005773 297 RLCPKRRQTMLFS 309 (678)
Q Consensus 297 ~~~~~~~q~il~S 309 (678)
..++...+++++.
T Consensus 150 ~~~~~~~~~~~vG 162 (459)
T 3upu_A 150 STIPPWCTIIGIG 162 (459)
T ss_dssp HHSCTTCEEEEEE
T ss_pred HhccCCCEEEEEC
Confidence 6666555555554
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.98 E-value=1.8e-05 Score=88.69 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=79.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCce
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIR 226 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~ 226 (678)
.+++.|..++..++.++.+++.|+.|+|||.+ +..++..+... +.++++++||...+..+.+.+ +..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~~-----g~~Vl~~ApT~~Aa~~L~e~~-------~~~ 255 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAESL-----GLEVGLCAPTGKAARRLGEVT-------GRT 255 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHH-------TSC
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHhc-----CCeEEEecCcHHHHHHhHhhh-------ccc
Confidence 48999999999999999999999999999976 44455444332 346899999999987665532 111
Q ss_pred eEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEE
Q 005773 227 CCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTM 306 (678)
Q Consensus 227 v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~i 306 (678)
...++. .+. . .|.. +... ......+++||||||+.+.. ..+..++..++...++|
T Consensus 256 a~Tih~---------ll~----~---~~~~----~~~~-~~~~~~~dvlIIDEasml~~----~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 256 ASTVHR---------LLG----Y---GPQG----FRHN-HLEPAPYDLLIVDEVSMMGD----ALMLSLLAAVPPGARVL 310 (574)
T ss_dssp EEEHHH---------HTT----E---ETTE----ESCS-SSSCCSCSEEEECCGGGCCH----HHHHHHHTTSCTTCEEE
T ss_pred HHHHHH---------HHc----C---Ccch----hhhh-hcccccCCEEEEcCccCCCH----HHHHHHHHhCcCCCEEE
Confidence 111110 000 0 0000 0000 11233678999999997643 35566777777666766
Q ss_pred EEEe
Q 005773 307 LFSA 310 (678)
Q Consensus 307 l~SA 310 (678)
++.=
T Consensus 311 lvGD 314 (574)
T 3e1s_A 311 LVGD 314 (574)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6543
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=4.7e-05 Score=88.62 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=55.7
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 145 ~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
+..+++.|..++..++.+.-+++.||+|+|||.+ +..++..+... .+.++|+++||...+.++.+.+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~-i~~~i~~l~~~----~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVT-SATIVYHLSKI----HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHH-HHHHHHHHHHH----HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHH-HHHHHHHHHhC----CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4568899999999999877789999999999976 44455555432 2346999999999999988887764
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.91 E-value=7.4e-05 Score=86.86 Aligned_cols=69 Identities=17% Similarity=0.117 Sum_probs=55.7
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 005773 145 YSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (678)
Q Consensus 145 ~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 218 (678)
...+++.|..++..++.+.-.++.||+|+|||.+ +..++..+... .+.++|+++||...+.++.+.+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~~----~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ----GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHTT----CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHHc----CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 3457999999999999888889999999999986 45566666542 245799999999999988877764
No 101
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.88 E-value=3.2e-05 Score=88.44 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHhcCCC-EEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 005773 147 KPTPIQAACIPLALTGRD-ICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEK 218 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~d-vl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 218 (678)
.+.+-|.+|+..++..++ .||.||+|||||.+ +..++..++.. +.+||+++||...+.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t-i~~~I~~l~~~-----~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT-VVEIILQAVKQ-----GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH-HHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH-HHHHHHHHHhC-----CCeEEEEcCchHHHHHHHHHHHh
Confidence 578999999999998775 56999999999987 55566666554 34699999999999988877754
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.67 E-value=0.0014 Score=74.67 Aligned_cols=72 Identities=17% Similarity=0.178 Sum_probs=55.5
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 146 ~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
..+++-|.+++. ..+..++|.|+.|||||.+ ++.-+..++.... .++.++|++++|+.++.++.+.+..+..
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~-l~~ri~~l~~~~~-~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRV-LVHRIAWLMSVEN-CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHH-HHHHHHHHHHTSC-CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHH-HHHHHHHHHHhCC-CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 468999999997 2356799999999999987 4554455544322 3456799999999999999999887753
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.90 E-value=0.012 Score=62.22 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=55.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhc
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQF 222 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~ 222 (678)
.|+|+|...+..+...+-+++..+-+.|||.+....++..+... ++..+++++|++..|..+.+.+..+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~----~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN----KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS----SSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 58999999998775567788999999999987665555444432 3457999999999998888777766543
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.63 E-value=0.018 Score=64.73 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=56.5
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcC
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFT 223 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~ 223 (678)
.|+|+|...+..+...+-+++..+-|+|||.+....++..+... ++..++++.|++..|..+.+.+..+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~----~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN----KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS----SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC----CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 48999999998775567789999999999987655555444433 24579999999999998888887776543
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.58 E-value=0.01 Score=55.50 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHh---------cCCCEEEEcCCCchhhhh
Q 005773 149 TPIQAACIPLAL---------TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 149 ~~iQ~~~i~~ll---------~g~dvl~~a~TGsGKT~~ 178 (678)
++.|..++..+. .|+.+++.||+|+|||+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 445655555443 367899999999999975
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.14 E-value=0.018 Score=61.48 Aligned_cols=107 Identities=21% Similarity=0.201 Sum_probs=60.4
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l 243 (678)
-.++.|+.|+|||... ...+. . ..++|++||++++..+.+.+... +..
T Consensus 163 v~~I~G~aGsGKTt~I-~~~~~----~------~~~lVlTpT~~aa~~l~~kl~~~----~~~----------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI-LSRVN----F------EEDLILVPGRQAAEMIRRRANAS----GII----------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHH-HHHCC----T------TTCEEEESCHHHHHHHHHHHTTT----SCC-----------------
T ss_pred EEEEEcCCCCCHHHHH-HHHhc----c------CCeEEEeCCHHHHHHHHHHhhhc----Ccc-----------------
Confidence 3569999999999862 22221 1 13599999999998776665321 100
Q ss_pred cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEec
Q 005773 244 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSAT 311 (678)
Q Consensus 244 ~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SAT 311 (678)
....+-|.|-+.++. +.........++||||||- |+..|.. ..++...+. .+++++.-+
T Consensus 211 -~~~~~~V~T~dsfL~---~~~~~~~~~~d~liiDE~s-m~~~~~l---~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 -VATKDNVRTVDSFLM---NYGKGARCQFKRLFIDEGL-MLHTGCV---NFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp -CCCTTTEEEHHHHHH---TTTSSCCCCCSEEEEETGG-GSCHHHH---HHHHHHTTC-SEEEEEECT
T ss_pred -ccccceEEEeHHhhc---CCCCCCCCcCCEEEEeCcc-cCCHHHH---HHHHHhCCC-CEEEEecCc
Confidence 001223677666543 2212222347899999998 4443332 333444433 455555443
No 107
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.11 E-value=0.019 Score=59.25 Aligned_cols=25 Identities=20% Similarity=0.046 Sum_probs=18.1
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
++.+++.||+|+|||.. +-.+.+.+
T Consensus 37 ~~~lll~G~~GtGKT~l-a~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL-LQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCcHHHH-HHHHHHHH
Confidence 46899999999999975 33334443
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.08 E-value=0.021 Score=53.72 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=26.8
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr 206 (678)
|+-.++.|++|+|||+. ++-++..+... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~-ll~~~~~~~~~-----g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTE-LLSFVEIYKLG-----KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHH-HHHHHHHHHHT-----TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHH-HHHHHHHHHHC-----CCeEEEEeecc
Confidence 55577999999999987 44455444332 34688888884
No 109
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.00 E-value=0.0032 Score=57.20 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=24.7
Q ss_pred CeeEEEEeCCcccccCChHHHHHHHHHHCCCC-ccEEEEEeccC
Q 005773 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKR-RQTMLFSATLT 313 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~-~q~il~SATl~ 313 (678)
+.++|||||.+.+.... ...+..+++.+... ..++++|+..+
T Consensus 83 ~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred CCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 45689999999865433 55555665544322 33255555543
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.97 E-value=0.0088 Score=58.19 Aligned_cols=91 Identities=22% Similarity=0.275 Sum_probs=52.3
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (678)
|.-+++.|++|+|||++ ++-++.++... +.+|+|+.|...- . -...++...++..
T Consensus 12 G~i~litG~mGsGKTT~-ll~~~~r~~~~-----g~kVli~~~~~d~--r---~~~~i~srlG~~~-------------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAE-LIRRLHRLEYA-----DVKYLVFKPKIDT--R---SIRNIQSRTGTSL-------------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHH-HHHHHHHHHHT-----TCCEEEEEECCCG--G---GCSSCCCCCCCSS--------------
T ss_pred cEEEEEECCCCCcHHHH-HHHHHHHHHhc-----CCEEEEEEeccCc--h---HHHHHHHhcCCCc--------------
Confidence 45677899999999987 55555555443 3358888776421 0 0001111111110
Q ss_pred HhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccc
Q 005773 242 ALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLL 284 (678)
Q Consensus 242 ~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (678)
..+.+.+...++..+... ..-..+++|||||++.+.
T Consensus 67 -----~~~~~~~~~~i~~~i~~~--~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 -----PSVEVESAPEILNYIMSN--SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp -----CCEEESSTHHHHHHHHST--TSCTTCCEEEECSGGGSC
T ss_pred -----cccccCCHHHHHHHHHHH--hhCCCCCEEEEecCccCc
Confidence 123456666777766652 223457899999999754
No 111
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.88 E-value=0.015 Score=55.10 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=27.6
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr 206 (678)
|+=.++.|++|||||++ ++-++.++..+ +.+|+++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~-ll~~a~r~~~~-----g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEE-LIRRIRRAKIA-----KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHH-HHHHHHHHHHT-----TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHH-HHHHHHHHHHC-----CCEEEEEEecc
Confidence 44567899999999987 55666555433 34589998874
No 112
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.037 Score=56.76 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=20.7
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhc
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLY 189 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~ 189 (678)
+.++++.||+|+|||++ +-.++..+..
T Consensus 45 ~~~lli~GpPGTGKT~~-v~~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQL-VNDVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHH-HHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 46799999999999986 5556666644
No 113
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.79 E-value=0.013 Score=67.71 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=54.9
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 146 ~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
..+++-|.+++.. ....++|.|..|||||.+ +..-+.+++... +..+.++|+|+.|+.+|..+.+.+..+..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~v-L~~ri~~ll~~~-~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRV-LTHRIAYLMAEK-HVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHH-HHHHHHHHHHTT-CCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHH-HHHHHHHHHHhc-CCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 4689999999875 356899999999999987 444444444432 23456799999999999999988887643
No 114
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.74 E-value=0.0096 Score=72.84 Aligned_cols=71 Identities=30% Similarity=0.283 Sum_probs=55.7
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
.+|+-|.++|.. .+++++|.|..|||||.+.+--++..+..........++|+|++|+..|..+.+.+...
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 589999999975 38899999999999998854455555544332335568999999999999998888764
No 115
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.60 E-value=0.0072 Score=69.18 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=53.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 147 KPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
.+++-|.+++.. .+..++|.|..|||||.+ ++.-+.+++... +..+.++|+|+.|+.+|.++.+.+..+..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~-l~~ri~~ll~~~-~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRV-ITNKIAHLIRGC-GYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHH-HHHHHHHHHHHH-CCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHH-HHHHHHHHHHhc-CCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999975 367899999999999987 333333333321 12356799999999999999998887643
No 116
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.41 E-value=0.067 Score=57.25 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=69.8
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc--CcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHH
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT--PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~--Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (678)
-+++.|++|+|||++ +.-+...+... +.+|+++. +.|.-+ .+.+..++...++.+.....+..
T Consensus 99 vI~lvG~~GsGKTTt-~~kLA~~l~~~-----G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~d------ 163 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTT-AGKLAYFYKKR-----GYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQN------ 163 (433)
T ss_dssp EEEECCCTTSCHHHH-HHHHHHHHHHT-----TCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCSC------
T ss_pred EEEEECCCCCCHHHH-HHHHHHHHHHc-----CCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccCC------
Confidence 467899999999976 23333333222 23455544 334333 23344444444554432222211
Q ss_pred HhcCCCCEEEECchHHH-HHHhccCccCCCCeeEEEEeCCcccc---cCChHHHHHHHHHHCCCCccEEEEEeccChhHH
Q 005773 242 ALRSMPDIVVATPGRMI-DHLRNSMSVDLDDLAVLILDEADRLL---ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVD 317 (678)
Q Consensus 242 ~l~~~~dIiv~Tp~~L~-~~l~~~~~~~l~~i~~lVvDEah~ll---~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~ 317 (678)
|..+. ..+.. .....++++|||.+-++. +..+...+..+.....+..-+++++|+...+..
T Consensus 164 ------------p~~i~~~al~~---a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~ 228 (433)
T 3kl4_A 164 ------------PIEIAKKGVDI---FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY 228 (433)
T ss_dssp ------------HHHHHHHHHHH---TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH
T ss_pred ------------HHHHHHHHHHH---HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH
Confidence 22221 22222 122467899999998754 333556667777766666667888888776555
Q ss_pred HHHHH
Q 005773 318 ELIKL 322 (678)
Q Consensus 318 ~l~~~ 322 (678)
..+..
T Consensus 229 ~~a~~ 233 (433)
T 3kl4_A 229 DLASR 233 (433)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 117
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.27 E-value=0.063 Score=50.85 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=18.0
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHH
Q 005773 163 RDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
+.+++.|++|+|||.. +..+...+
T Consensus 55 ~~~~l~G~~GtGKT~l-a~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL-LAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 6899999999999975 33444444
No 118
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.03 E-value=0.034 Score=57.68 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=26.5
Q ss_pred CcHHHHHHHHHHh----cCC---CEEEEcCCCchhhhhhhhchhHHHh
Q 005773 148 PTPIQAACIPLAL----TGR---DICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 148 ~~~iQ~~~i~~ll----~g~---dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
+.|+|..++..+. +|+ .+++.||.|+|||.. ...+...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~-a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDAL-IYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHH-HHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHH-HHHHHHHHh
Confidence 3567777665543 343 388999999999975 444455554
No 119
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.96 E-value=0.21 Score=53.38 Aligned_cols=130 Identities=14% Similarity=0.116 Sum_probs=68.8
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEc--CcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHH
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILT--PTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQET 241 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~--Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~ 241 (678)
-++++|++|+|||++ +..+...+... +.+|+++. |.|.-+ ++.+..++...++.+.....+..
T Consensus 102 vIlivG~~G~GKTTt-~~kLA~~l~~~-----G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~d------ 166 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTT-VAKLARYFQKR-----GYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEKD------ 166 (443)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHHTT-----TCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCCC------
T ss_pred EEEEECcCCCCHHHH-HHHHHHHHHHC-----CCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCCC------
Confidence 467899999999986 34444444322 22455544 444443 33455555555665543222211
Q ss_pred HhcCCCCEEEECchHH-HHHHhccCccCCCCeeEEEEeCCccccc-CChHHHHHHHHHHCCCCccEEEEEeccChhHHHH
Q 005773 242 ALRSMPDIVVATPGRM-IDHLRNSMSVDLDDLAVLILDEADRLLE-LGFSAEIHELVRLCPKRRQTMLFSATLTEDVDEL 319 (678)
Q Consensus 242 ~l~~~~dIiv~Tp~~L-~~~l~~~~~~~l~~i~~lVvDEah~ll~-~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l 319 (678)
|..+ ...+... ....++++|||.+-++.. ......+..+.....+..-++++.||...+....
T Consensus 167 ------------p~~i~~~al~~a---~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~ 231 (443)
T 3dm5_A 167 ------------AIKLAKEGVDYF---KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ 231 (443)
T ss_dssp ------------HHHHHHHHHHHH---HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH
T ss_pred ------------HHHHHHHHHHHH---HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH
Confidence 2211 1112110 112467899999876542 2234445555555555555777888877665555
Q ss_pred HHHh
Q 005773 320 IKLS 323 (678)
Q Consensus 320 ~~~~ 323 (678)
+..+
T Consensus 232 a~~f 235 (443)
T 3dm5_A 232 ALAF 235 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 120
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.87 E-value=0.076 Score=57.28 Aligned_cols=41 Identities=15% Similarity=0.322 Sum_probs=24.2
Q ss_pred CeeEEEEeCCcccccC-ChHHHHHHHHHHC-CCCccEEEEEecc
Q 005773 271 DLAVLILDEADRLLEL-GFSAEIHELVRLC-PKRRQTMLFSATL 312 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~-gf~~~i~~i~~~~-~~~~q~il~SATl 312 (678)
...+|||||+|.+... .....+..+++.+ ....++|+ +++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIi-tt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVI-CSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEE-EESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEE-EECC
Confidence 3568999999998753 2344455555443 33445554 4443
No 121
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.83 E-value=0.22 Score=47.17 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=25.0
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
....+|||||+|.+... ....+..++...+....+|+.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999997643 3445566666655555555444
No 122
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.74 E-value=0.13 Score=46.04 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=16.5
Q ss_pred hcCCCEEEEcCCCchhhhh
Q 005773 160 LTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 160 l~g~dvl~~a~TGsGKT~~ 178 (678)
..+.++++.|++|+|||..
T Consensus 22 ~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TCCSCEEEESSTTSSHHHH
T ss_pred CCCCCEEEECCCCCCHHHH
Confidence 4567999999999999975
No 123
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.66 E-value=0.035 Score=62.40 Aligned_cols=114 Identities=19% Similarity=0.264 Sum_probs=73.6
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCC
Q 005773 147 KPTPIQAACIPLALTG--RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTD 224 (678)
Q Consensus 147 ~~~~iQ~~~i~~ll~g--~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~ 224 (678)
.+|.-|.+++..++.- .-.++.|+-|.|||.+..+ ++..+. ..++|.+|+...+..+.+... .
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~-~~a~~~--------~~~~vtAP~~~a~~~l~~~~~----~-- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQ-LISRIA--------GRAIVTAPAKASTDVLAQFAG----E-- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHH-HHHHSS--------SCEEEECSSCCSCHHHHHHHG----G--
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHH-HHHHHH--------hCcEEECCCHHHHHHHHHHhh----C--
Confidence 6899999999988873 3467999999999965333 333331 136999999987654333211 1
Q ss_pred ceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCcc
Q 005773 225 IRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQ 304 (678)
Q Consensus 225 ~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q 304 (678)
.|-+..|.-+.. . +...++||||||=.|- ...+..++.. ..
T Consensus 240 -----------------------~i~~~~Pd~~~~---~-----~~~~dlliVDEAAaIp----~pll~~ll~~----~~ 280 (671)
T 2zpa_A 240 -----------------------KFRFIAPDALLA---S-----DEQADWLVVDEAAAIP----APLLHQLVSR----FP 280 (671)
T ss_dssp -----------------------GCCBCCHHHHHH---S-----CCCCSEEEEETGGGSC----HHHHHHHHTT----SS
T ss_pred -----------------------CeEEeCchhhhh---C-----cccCCEEEEEchhcCC----HHHHHHHHhh----CC
Confidence 033445655432 1 2357899999999763 3455555543 33
Q ss_pred EEEEEeccCh
Q 005773 305 TMLFSATLTE 314 (678)
Q Consensus 305 ~il~SATl~~ 314 (678)
.++||.|...
T Consensus 281 ~v~~~tTv~G 290 (671)
T 2zpa_A 281 RTLLTTTVQG 290 (671)
T ss_dssp EEEEEEEBSS
T ss_pred eEEEEecCCc
Confidence 5888888864
No 124
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.64 E-value=0.025 Score=54.29 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=27.0
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~ 207 (678)
|+=.++.|++|||||++ ++-.+.+.... +.+|+|+.|...
T Consensus 28 G~l~vitG~MgsGKTT~-lL~~a~r~~~~-----g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEE-LIRRVRRTQFA-----KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHH-HHHHHHHHHHT-----TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHH-HHHHHHHHHHC-----CCEEEEEEeccC
Confidence 34456899999999987 55555555433 345899999763
No 125
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.55 E-value=0.26 Score=49.11 Aligned_cols=16 Identities=31% Similarity=0.173 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
+.+++.||+|+|||..
T Consensus 65 ~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4799999999999975
No 126
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.52 E-value=0.06 Score=55.31 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=24.4
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEE
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 307 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il 307 (678)
....+|||||+|.+........+..+++..+...++|+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~ 141 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIII 141 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEE
Confidence 36789999999998622244555566665554555554
No 127
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.33 E-value=0.12 Score=51.76 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=28.8
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--hcCCCEEEEcCCCchhhhh
Q 005773 125 NSFMELNLSRPLLRACEALGYSKPTPIQ-AACIPLA--LTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 125 ~~f~~l~l~~~l~~~l~~~g~~~~~~iQ-~~~i~~l--l~g~dvl~~a~TGsGKT~~ 178 (678)
.+|.++.-.....+.+...- . .+.+ ...+..+ ..++.+++.||+|+|||..
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVV-E--LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHT-H--HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHH-H--HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 45677766666666655431 0 0111 1111111 2356799999999999975
No 128
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.33 E-value=0.093 Score=50.86 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=27.9
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr 206 (678)
|+=.++.|++|||||+. ++-.+.+.... +.+++|+.|..
T Consensus 19 g~l~v~~G~MgsGKTT~-lL~~~~r~~~~-----g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTE-LMRRVRRFQIA-----QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHH-HHHHHHHHHTT-----TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHC-----CCeEEEEeecC
Confidence 56677899999999987 55555554433 44689988875
No 129
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.32 E-value=0.16 Score=46.82 Aligned_cols=25 Identities=20% Similarity=0.049 Sum_probs=18.0
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.+.+++.|++|+|||.. +..+.+.+
T Consensus 43 ~~~vll~G~~G~GKT~l-a~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI-VEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHH-HHHHHHHH
T ss_pred CCceEEECCCCCCHHHH-HHHHHHHH
Confidence 45799999999999975 33344443
No 130
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.23 E-value=0.14 Score=53.10 Aligned_cols=42 Identities=14% Similarity=0.270 Sum_probs=28.3
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEecc
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl 312 (678)
...+++||||+|. ++......+..+++..+....+|+.|-.+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 4678999999999 54445666777777766665555555433
No 131
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.17 E-value=0.076 Score=50.89 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=27.3
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~ 207 (678)
|.=.++.|++|||||+. ++..+.+.... +.+++|+.|...
T Consensus 28 G~I~vitG~M~sGKTT~-Llr~~~r~~~~-----g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEE-LIRRLRRGIYA-----KQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHT-----TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHH-HHHHHHHHHHc-----CCceEEEEeccC
Confidence 45567999999999976 55555555443 345899999753
No 132
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.95 E-value=0.062 Score=54.67 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
.++++.||+|+|||..
T Consensus 68 ~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4699999999999975
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.76 E-value=0.15 Score=53.54 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=17.4
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHH
Q 005773 163 RDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
+.+++.||+|+|||.. +-.+.+.+
T Consensus 46 ~~vll~G~~G~GKT~l-a~~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFV-SKYIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHH-HHHHHHHH
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 4689999999999975 33444433
No 134
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.76 E-value=0.11 Score=54.47 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
++.+++.||+|+|||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 46899999999999975
No 135
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.61 E-value=0.051 Score=52.70 Aligned_cols=18 Identities=22% Similarity=0.028 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.++.+++.||+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 357899999999999975
No 136
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.58 E-value=0.066 Score=54.77 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=19.1
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
++++++.||+|+|||.. +..+.+.+.
T Consensus 152 ~~~lll~G~~GtGKT~L-a~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL-LAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHH-HHHHHHHHH
T ss_pred CceEEEECCCCCCHHHH-HHHHHHHHH
Confidence 57899999999999975 334444443
No 137
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.57 E-value=0.1 Score=49.17 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=27.3
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCc
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Pt 205 (678)
|+=.++.|++|||||.- ++-.+.+..... .+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~~-----~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQIAQ-----YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHTT-----CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHcC-----CeEEEEccc
Confidence 55567999999999965 566665554432 458888887
No 138
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.29 E-value=0.23 Score=45.72 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=17.7
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHH
Q 005773 163 RDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
+.+++.|++|+|||.. +-.+.+.+
T Consensus 44 ~~~ll~G~~G~GKT~l-~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAI-VEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHH-HHHHHHHH
T ss_pred CceEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999975 33444444
No 139
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.22 E-value=0.14 Score=53.75 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=13.7
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
.+++.||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 689999999999975
No 140
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.06 E-value=0.26 Score=56.94 Aligned_cols=80 Identities=16% Similarity=0.070 Sum_probs=66.6
Q ss_pred CceEEEEeccHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc-cccCCCCCccEEEE
Q 005773 370 TSKVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-ARGLDIIGVQTVIN 444 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~----~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~-~~GlDi~~v~~VI~ 444 (678)
+.+++|.+||+..+.+....+. ..++++..+||+++..+|..++..+.+|..+|+|+|... ...+.+.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 5789999999988887766554 347999999999999999999999999999999999754 45678889999986
Q ss_pred cCCCC
Q 005773 445 YACPR 449 (678)
Q Consensus 445 ~d~p~ 449 (678)
-....
T Consensus 497 DEaHr 501 (780)
T 1gm5_A 497 DEQHR 501 (780)
T ss_dssp ESCCC
T ss_pred cccch
Confidence 55443
No 141
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.75 E-value=0.71 Score=44.11 Aligned_cols=23 Identities=30% Similarity=0.176 Sum_probs=16.6
Q ss_pred CEEEEcCCCchhhhhhhhchhHHH
Q 005773 164 DICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.+++.|++|+|||.. +-.+...+
T Consensus 47 ~~ll~G~~G~GKT~l-~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI-ARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHHh
Confidence 588999999999975 33334443
No 142
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.74 E-value=0.14 Score=52.60 Aligned_cols=49 Identities=14% Similarity=0.090 Sum_probs=29.0
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----cCCCEEEEcCCCchhhhh
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLAL-----TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll-----~g~dvl~~a~TGsGKT~~ 178 (678)
..+|.++.-...+.+.|...-. .|. ..|.++ ..+.+++.||+|+|||+.
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 4567777766666666654310 000 011111 135799999999999975
No 143
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.64 E-value=0.47 Score=50.23 Aligned_cols=80 Identities=9% Similarity=0.004 Sum_probs=66.3
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhh---cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccccc----ccCCCCCcc
Q 005773 368 TFTSKVIIFSGTKQAAHRLKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA----RGLDIIGVQ 440 (678)
Q Consensus 368 ~~~~~vLVF~~s~~~~~~l~~~L~~---~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~----~GlDi~~v~ 440 (678)
..+.++||.+|++..+.++...+.. .++.+..+||+.+..++...+..+..|..+|+|+|.-.- .-+++..++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3467899999999999999988887 588999999999999999999999999999999996421 225667889
Q ss_pred EEEEcCC
Q 005773 441 TVINYAC 447 (678)
Q Consensus 441 ~VI~~d~ 447 (678)
+||.=..
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8885443
No 144
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.97 E-value=0.36 Score=50.30 Aligned_cols=17 Identities=24% Similarity=0.178 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
.+.+++.||+|+|||+.
T Consensus 84 ~~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCCEEEECSTTSCHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 35799999999999975
No 145
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.94 E-value=0.53 Score=44.33 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=39.6
Q ss_pred CCeeEEEEeCCcccccCCh--HHHHHHHHHHCCCCccEEEEEeccChhHHHHHH
Q 005773 270 DDLAVLILDEADRLLELGF--SAEIHELVRLCPKRRQTMLFSATLTEDVDELIK 321 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf--~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~ 321 (678)
..+++||+||.-..+.+|+ .+.+..++...|...-+|+.+-.+++.+.+.+.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD 172 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLAD 172 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCS
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCc
Confidence 5789999999988766654 356777888888777777777777877776654
No 146
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.92 E-value=0.42 Score=48.54 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=25.0
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
....+|||||+|.+... ....+..++...+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999998642 3445566666655555554443
No 147
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.67 E-value=0.38 Score=48.76 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
++.+++.||+|+|||+.
T Consensus 49 ~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CSEEEEECSSSSSHHHH
T ss_pred CceEEEECCCCcCHHHH
Confidence 56799999999999975
No 148
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.55 E-value=0.9 Score=44.48 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
.+.+++.||+|+|||..
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 45789999999999975
No 149
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=91.32 E-value=0.48 Score=51.46 Aligned_cols=52 Identities=21% Similarity=0.306 Sum_probs=39.1
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhh
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQ 221 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~ 221 (678)
.|..+.+.|.||||||++ +..++... +..+|||+|+...|.|+++.+..|..
T Consensus 13 ~~~~~~l~g~~gs~ka~~-~a~l~~~~--------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL-VAEIAERH--------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHH-HHHHHHHS--------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHH-HHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 355688999999999985 23333221 22489999999999999999998753
No 150
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.26 E-value=0.7 Score=47.98 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
+..+++.||+|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56899999999999975
No 151
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.19 E-value=0.76 Score=47.70 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=22.9
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLF 308 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~ 308 (678)
.....+|||||+|.+... ....+..++...+....+|+.
T Consensus 117 ~~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~ 155 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLA 155 (373)
T ss_dssp SSSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEE
T ss_pred cCCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEE
Confidence 345679999999987543 234445555554443333333
No 152
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.12 E-value=0.26 Score=50.86 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=25.2
Q ss_pred CeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
...+|||||+|.+... ....+..+++..+....+|+.+
T Consensus 133 ~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 5579999999988642 3455666666666555555544
No 153
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.05 E-value=0.45 Score=50.16 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
.+.+++.||+|+|||+.
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46899999999999975
No 154
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.66 E-value=0.57 Score=48.07 Aligned_cols=16 Identities=38% Similarity=0.299 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
..+++.||+|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5899999999999975
No 155
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.63 E-value=0.37 Score=48.49 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
++.+++.||+|+|||+.
T Consensus 54 ~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 56899999999999975
No 156
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.63 E-value=0.31 Score=50.04 Aligned_cols=49 Identities=20% Similarity=0.111 Sum_probs=28.0
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-----CCCEEEEcCCCchhhhh
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALT-----GRDICGSAITGSGKTAA 178 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll~-----g~dvl~~a~TGsGKT~~ 178 (678)
..+|++++--..+.+.|...- ..|. ..|.++. .+.+++.||+|+|||+.
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v---~~p~---~~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAV---ILPI---KFPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH---HHHH---HCGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHH---HHHH---hCHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 356777776666666554320 0000 0011221 26799999999999975
No 157
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.50 E-value=1.6 Score=52.88 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=64.7
Q ss_pred CCceEEEEeccHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcc-cccccCCCCCccEEE
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-VAARGLDIIGVQTVI 443 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~-~~~~GlDi~~v~~VI 443 (678)
.+.+++|.+||+..+.+....+.. .++.+..+++..+..++..++..+..|..+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 456999999999888877766653 467899999999999999999999999999999995 445668888898888
Q ss_pred EcC
Q 005773 444 NYA 446 (678)
Q Consensus 444 ~~d 446 (678)
.=.
T Consensus 731 iDE 733 (1151)
T 2eyq_A 731 VDE 733 (1151)
T ss_dssp EES
T ss_pred Eec
Confidence 533
No 158
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.32 E-value=0.52 Score=48.60 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=26.2
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
....++||||+|.|... ..+.+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 35789999999987642 3455666777766655555443
No 159
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.91 E-value=2.1 Score=45.09 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=30.5
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhh
Q 005773 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~---g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~ 178 (678)
+..+|++.+=-....+.|... .+..|.-++...+ -..+.+|+.||+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHH
Confidence 456788887555555555432 1111211221111 1137899999999999975
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.91 E-value=0.99 Score=45.63 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=24.1
Q ss_pred CeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 271 DLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
...+|||||+|.+... ....+..++...+....+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 4679999999998642 2334455566655555555544
No 161
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.90 E-value=0.57 Score=44.86 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.|.-+++.|++|+|||+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 356678999999999964
No 162
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.83 E-value=1.6 Score=47.40 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=29.3
Q ss_pred eeEEEEeCCcccccC-----C-----hHHHHHHHHHHCCCCccEEEEEeccCh
Q 005773 272 LAVLILDEADRLLEL-----G-----FSAEIHELVRLCPKRRQTMLFSATLTE 314 (678)
Q Consensus 272 i~~lVvDEah~ll~~-----g-----f~~~i~~i~~~~~~~~q~il~SATl~~ 314 (678)
..+|+|||+|.+... + ....+..++........++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 358999999988742 1 234455556666666778888888664
No 163
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.82 E-value=0.65 Score=49.94 Aligned_cols=49 Identities=12% Similarity=-0.016 Sum_probs=28.1
Q ss_pred cCCcccCCCCHHHHHHHHHcC-----CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhh
Q 005773 124 ANSFMELNLSRPLLRACEALG-----YSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g-----~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~ 178 (678)
..+|.++.-...+.+.|...- +..+. + ......+.+++.||+|+|||+.
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~--~----~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLF--T----GKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTT--S----GGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHh--h----ccCCCCceEEEECCCCCCHHHH
Confidence 456777765566666554320 00000 0 0011236799999999999975
No 164
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=88.69 E-value=2.1 Score=38.67 Aligned_cols=73 Identities=18% Similarity=0.312 Sum_probs=53.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCC
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~ 271 (678)
+.++||.++++..+..+++.+... ++.+..++|+.+.......+ .+...|+|+|. .+.. .+++..
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAAR--GIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTT--TCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc--CCchhc
Confidence 346899999999999888887763 78899999998766654433 34678999993 2222 567778
Q ss_pred eeEEEEeC
Q 005773 272 LAVLILDE 279 (678)
Q Consensus 272 i~~lVvDE 279 (678)
+.+||.-.
T Consensus 104 ~~~Vi~~~ 111 (163)
T 2hjv_A 104 ISLVINYD 111 (163)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887643
No 165
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=88.56 E-value=0.93 Score=54.51 Aligned_cols=80 Identities=9% Similarity=0.004 Sum_probs=66.1
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhh---cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccccc----ccCCCCCcc
Q 005773 368 TFTSKVIIFSGTKQAAHRLKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAA----RGLDIIGVQ 440 (678)
Q Consensus 368 ~~~~~vLVF~~s~~~~~~l~~~L~~---~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~----~GlDi~~v~ 440 (678)
..+.++||.+|++..+.++...|.. .++.+..+||+++..+|...+..+..|..+|||+|.-.- .-+++.+++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 3467899999999999999998887 567999999999998999999999999999999996321 125667899
Q ss_pred EEEEcCC
Q 005773 441 TVINYAC 447 (678)
Q Consensus 441 ~VI~~d~ 447 (678)
+||.=..
T Consensus 199 ~lViDEa 205 (1104)
T 4ddu_A 199 FVFVDDV 205 (1104)
T ss_dssp EEEESCH
T ss_pred EEEEeCC
Confidence 9886443
No 166
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.56 E-value=2.1 Score=40.60 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=55.5
Q ss_pred CceEEEEeccHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc------cccCCCCC
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIG 438 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~------~~GlDi~~ 438 (678)
+.++||.+|++..+.++...+... ++.+..++|+.+...+... +..+..+|+|+|.-. ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999888776654 7889999999987665443 445677999999521 23467788
Q ss_pred ccEEEEcC
Q 005773 439 VQTVINYA 446 (678)
Q Consensus 439 v~~VI~~d 446 (678)
+++||.-.
T Consensus 159 ~~~lViDE 166 (220)
T 1t6n_A 159 IKHFILDE 166 (220)
T ss_dssp CCEEEEES
T ss_pred CCEEEEcC
Confidence 89888543
No 167
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.43 E-value=1.6 Score=42.08 Aligned_cols=17 Identities=24% Similarity=0.005 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
|.-+++.||+|+|||+.
T Consensus 24 G~~~~i~G~~GsGKTtl 40 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQI 40 (243)
T ss_dssp TSEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 45678999999999975
No 168
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.29 E-value=1.6 Score=47.05 Aligned_cols=38 Identities=26% Similarity=0.183 Sum_probs=23.8
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcC
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~P 204 (678)
|.-+++.|++|+|||.. ++-+...+.... +.+|+++..
T Consensus 203 G~liiI~G~pG~GKTtl-~l~ia~~~~~~~----g~~Vl~~s~ 240 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAF-ALNIAQNVATKT----NENVAIFSL 240 (454)
T ss_dssp TCEEEEECCTTSCHHHH-HHHHHHHHHHHS----SCCEEEEES
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHHhC----CCcEEEEEC
Confidence 45677999999999965 444444443211 224777664
No 169
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.27 E-value=1.4 Score=48.18 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=26.1
Q ss_pred CeeEEEEeCCccccc--CChHHHHHHHHHHCCCCccEEEEEecc
Q 005773 271 DLAVLILDEADRLLE--LGFSAEIHELVRLCPKRRQTMLFSATL 312 (678)
Q Consensus 271 ~i~~lVvDEah~ll~--~gf~~~i~~i~~~~~~~~q~il~SATl 312 (678)
...+|||||+|.+.. .+....+..++... ...+|+++++.
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 456899999999874 33445555555543 34567777664
No 170
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=88.01 E-value=2.4 Score=39.55 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=52.8
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCCe
Q 005773 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDL 272 (678)
Q Consensus 197 ~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i 272 (678)
+++||.++++.-+..+++.+... ++.+..++|+.+.......+ .+...|+|+|. .+.. .+++..+
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~--Gldi~~v 123 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASK--GLDFPAI 123 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHT--TCCCCCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhc--CCCcccC
Confidence 46999999999999888887763 78889999998876654433 35678999992 2333 5677788
Q ss_pred eEEEE
Q 005773 273 AVLIL 277 (678)
Q Consensus 273 ~~lVv 277 (678)
.+||.
T Consensus 124 ~~VI~ 128 (191)
T 2p6n_A 124 QHVIN 128 (191)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88876
No 171
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=87.95 E-value=2.3 Score=38.93 Aligned_cols=71 Identities=13% Similarity=0.228 Sum_probs=53.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCC
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~ 271 (678)
..++||.++++..|..++..+.. .++.+..++|+.+.......+ .+..+|+|+|.- +. ..+++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~~--~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----CA--RGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----CC--TTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----hh--cCCCccc
Confidence 45899999999999888877765 478889999998876655433 346789999931 22 3577888
Q ss_pred eeEEEE
Q 005773 272 LAVLIL 277 (678)
Q Consensus 272 i~~lVv 277 (678)
+.+||.
T Consensus 103 ~~~Vi~ 108 (175)
T 2rb4_A 103 VTIVVN 108 (175)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888885
No 172
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.84 E-value=0.24 Score=48.28 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=27.2
Q ss_pred CCeeEEEEeCCccccc-----CChHHHHHHHHHHCCCCccEEEEEeccCh
Q 005773 270 DDLAVLILDEADRLLE-----LGFSAEIHELVRLCPKRRQTMLFSATLTE 314 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~-----~gf~~~i~~i~~~~~~~~q~il~SATl~~ 314 (678)
...++||+||.-.+++ ......+..++..+.....+++++.-...
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~ 183 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD 183 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3567999999998775 33445466666555333345666554433
No 173
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.56 E-value=0.76 Score=46.69 Aligned_cols=17 Identities=24% Similarity=0.094 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
...+++.||+|+|||..
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 36899999999999975
No 174
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=87.32 E-value=0.54 Score=50.62 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=14.1
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
..+++.||+|+|||+.
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 3689999999999975
No 175
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.96 E-value=0.95 Score=47.62 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=16.6
Q ss_pred CCEEE--EcCCCchhhhhhhhchhHHH
Q 005773 163 RDICG--SAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 163 ~dvl~--~a~TGsGKT~~~~l~~l~~l 187 (678)
..+++ .|+.|+|||.. +-.+.+.+
T Consensus 51 ~~~li~i~G~~G~GKT~L-~~~~~~~~ 76 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL-AKFTVKRV 76 (412)
T ss_dssp EEEEEECTTCCSSSHHHH-HHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHH-HHHHHHHH
Confidence 45778 89999999975 33344433
No 176
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.96 E-value=1 Score=48.42 Aligned_cols=113 Identities=20% Similarity=0.145 Sum_probs=53.8
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEE-ecCCChHHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLV-VGGLSTKMQE 240 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~-~g~~~~~~~~ 240 (678)
|.-++++|++|+|||.. ++-+...+.... +.+|+++..-- -..|+...+... ..++....+ .|..+.. .+
T Consensus 200 G~l~ii~G~pg~GKT~l-al~ia~~~a~~~----g~~vl~~slE~-~~~~l~~R~~~~--~~~i~~~~l~~g~l~~~-~~ 270 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAF-ALTIAQNAALKE----GVGVGIYSLEM-PAAQLTLRMMCS--EARIDMNRVRLGQLTDR-DF 270 (444)
T ss_dssp TCEEEEEECTTSCHHHH-HHHHHHHHHHTT----CCCEEEEESSS-CHHHHHHHHHHH--HTTCCTTTCCGGGCCHH-HH
T ss_pred CcEEEEEeCCCCCHHHH-HHHHHHHHHHhC----CCeEEEEECCC-CHHHHHHHHHHH--HcCCCHHHHhCCCCCHH-HH
Confidence 34577999999999964 455544443221 23477765432 123333333211 112211111 2222222 22
Q ss_pred HH-------hcCCCCEEEE-----CchHHHHHHhccCccCCCCeeEEEEeCCcccccC
Q 005773 241 TA-------LRSMPDIVVA-----TPGRMIDHLRNSMSVDLDDLAVLILDEADRLLEL 286 (678)
Q Consensus 241 ~~-------l~~~~dIiv~-----Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~ 286 (678)
.. +.. ..+.|. |+..+...+... ..-..+++||||..+.+...
T Consensus 271 ~~~~~a~~~l~~-~~l~i~d~~~~s~~~l~~~~~~l--~~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 271 SRLVDVASRLSE-APIYIDDTPDLTLMEVRARARRL--VSQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHHHHHHHT-SCEEEECCTTCBHHHHHHHHHHH--HHHSCCCEEEEECGGGCBCC
T ss_pred HHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEcChhhcCCC
Confidence 11 222 345553 334444433321 00125789999999988743
No 177
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=86.92 E-value=2.8 Score=37.82 Aligned_cols=73 Identities=14% Similarity=0.301 Sum_probs=53.2
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCC
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~ 271 (678)
..++||.++++..+..++..+.. .++.+..++|+.+.......+ .+...|+|+|. .+.. .+++..
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLAR--GIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTT--TCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhc--CCCccc
Confidence 45799999999999888887775 377889999998866654433 35678999993 2222 567778
Q ss_pred eeEEEEeC
Q 005773 272 LAVLILDE 279 (678)
Q Consensus 272 i~~lVvDE 279 (678)
+.+||.-.
T Consensus 99 ~~~Vi~~~ 106 (165)
T 1fuk_A 99 VSLVINYD 106 (165)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88877633
No 178
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.68 E-value=1.2 Score=49.72 Aligned_cols=75 Identities=4% Similarity=0.044 Sum_probs=62.3
Q ss_pred CceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHH--hcCCccEEEEccc-c----------cccCCC
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELF--RKQHVDFLIATDV-A----------ARGLDI 436 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F--~~g~~~vLvaT~~-~----------~~GlDi 436 (678)
++.+||.+|++..+......|...++.+..++|+++..++..++..+ ..+..+||++|.- + ...+++
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~ 163 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEA 163 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHT
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhc
Confidence 56899999999999999999999999999999999999999988888 5788999999972 1 223345
Q ss_pred CCccEEEE
Q 005773 437 IGVQTVIN 444 (678)
Q Consensus 437 ~~v~~VI~ 444 (678)
..+.+||.
T Consensus 164 ~~i~~iVi 171 (591)
T 2v1x_A 164 RRFTRIAV 171 (591)
T ss_dssp TCEEEEEE
T ss_pred cCCcEEEE
Confidence 57777774
No 179
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.58 E-value=0.68 Score=49.59 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=31.4
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhh
Q 005773 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~---g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~ 178 (678)
+..+|++.+--..+.+.|... .+..|.-++...+ -.-+.+|+.||+|+|||+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTSSHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCCcHHHH
Confidence 346788888666666666543 1111111111111 1246899999999999975
No 180
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=86.53 E-value=2.8 Score=39.75 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=53.2
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCC
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~ 271 (678)
+.++||.||++.-+..+++.+... ++.+..++|+.+...+...+ .+..+|+|+|. .+.. ++++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~--Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAAR--GLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTTC--SSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhhc--CCCCcc
Confidence 346999999999999888887763 78889999998877665443 35678999993 2222 577778
Q ss_pred eeEEEE
Q 005773 272 LAVLIL 277 (678)
Q Consensus 272 i~~lVv 277 (678)
+.+||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 888773
No 181
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.47 E-value=0.65 Score=44.97 Aligned_cols=50 Identities=20% Similarity=0.050 Sum_probs=28.8
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIE 217 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 217 (678)
.|.-+++.|++|+|||+. ++-++..+... +.+++++.-.. ...++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl-~~~~~~~~~~~-----~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIF-SQQFLWNGLKM-----GEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHH-HHHHHHHHHHT-----TCCEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHhc-----CCeEEEEEccC-CHHHHHHHHH
Confidence 356788999999999975 34444333322 23466665432 2344444444
No 182
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=86.23 E-value=0.28 Score=49.73 Aligned_cols=15 Identities=40% Similarity=0.448 Sum_probs=13.7
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
.+++.||+|+|||..
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 599999999999975
No 183
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=86.04 E-value=2.8 Score=42.41 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=24.9
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
....+++||||||.|.... .+.+..+++..|...-+|+.+
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 3568899999999986432 344556666554444444433
No 184
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=85.87 E-value=4.1 Score=39.61 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=53.9
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc-----cc--ccCCCC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AA--RGLDII 437 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~-----~~--~GlDi~ 437 (678)
.+.++||.+|++..+.++...+... ++.+..++|+.+...+...+ .+..+|+|+|.- +. .++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3567999999999988887766543 78999999998876654433 256789999952 22 456788
Q ss_pred CccEEEEc
Q 005773 438 GVQTVINY 445 (678)
Q Consensus 438 ~v~~VI~~ 445 (678)
.+++||.-
T Consensus 186 ~~~~lViD 193 (249)
T 3ber_A 186 ALKYLVMD 193 (249)
T ss_dssp TCCEEEEC
T ss_pred ccCEEEEc
Confidence 88888853
No 185
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=85.78 E-value=4.9 Score=41.09 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=33.6
Q ss_pred eeEEEEeCCcccc-cCChHHHHHHHHHHCCCCccEEEEEeccChhHHHHHHHh
Q 005773 272 LAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDVDELIKLS 323 (678)
Q Consensus 272 i~~lVvDEah~ll-~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~~~l~~~~ 323 (678)
.+++++|.+.+.- .......+..+.+.+.....++++.++...++...+..+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 4567788887643 233555566666666566677888888877666665544
No 186
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.73 E-value=4 Score=41.32 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.2
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
+-+++.|++|+|||+.
T Consensus 105 ~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTS 120 (306)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEEcCCCChHHHH
Confidence 3466999999999975
No 187
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.68 E-value=14 Score=37.23 Aligned_cols=52 Identities=15% Similarity=0.321 Sum_probs=28.9
Q ss_pred chHHHHHHhccCccCCCCeeEEEEeCCccccc---CChHHHHHHHHHHCCCCccEEEEEec
Q 005773 254 PGRMIDHLRNSMSVDLDDLAVLILDEADRLLE---LGFSAEIHELVRLCPKRRQTMLFSAT 311 (678)
Q Consensus 254 p~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~---~gf~~~i~~i~~~~~~~~q~il~SAT 311 (678)
...++..+..... .--+|||||+|.+.. ..+...+..+....+ +.. ++++++
T Consensus 124 ~~~l~~~l~~~~~----~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~i~~g~ 178 (357)
T 2fna_A 124 FANLLESFEQASK----DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIK-FIMSGS 178 (357)
T ss_dssp HHHHHHHHHHTCS----SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEE-EEEEES
T ss_pred HHHHHHHHHhcCC----CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeE-EEEEcC
Confidence 3445555544211 134899999999864 345566666655542 333 444444
No 188
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.60 E-value=4 Score=43.40 Aligned_cols=53 Identities=11% Similarity=0.027 Sum_probs=29.4
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhh
Q 005773 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~---g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~ 178 (678)
+..+|++.+=-..+.+.|... .+..|.-++...+ -..+.+|+.||+|+|||+.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHH
Confidence 345788887555555554331 1111111111111 1236799999999999975
No 189
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=85.39 E-value=5.1 Score=44.74 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=22.8
Q ss_pred HHHHHhcCCCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 155 CIPLALTGRDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 155 ~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
+-..+..|..+++.||+|+|||+. +-++..++
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtl--ar~ia~~l 84 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSML--GQAMAELL 84 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHH--HHHHHHTS
T ss_pred ccccccCCCEEEEEeCCCCCHHHH--HHHHhccC
Confidence 334456788999999999999974 44444443
No 190
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.70 E-value=0.85 Score=48.69 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=29.5
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhh
Q 005773 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~---g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~ 178 (678)
+..+|++.+--....+.|... .+..|.-++...+ -..+.+|+.||+|+|||+.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHH
Confidence 445788887555555554332 1111111111111 1137899999999999975
No 191
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=84.55 E-value=2.9 Score=38.16 Aligned_cols=88 Identities=11% Similarity=0.173 Sum_probs=59.3
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCC
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~ 271 (678)
..++||.|+++..+..+++.+... ++.+..++|+.+.......+ .+...|+|+|.- +. ..+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~--~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG--RGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CS--TTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hh--cCcchhh
Confidence 346999999999999888887763 78889999998776654433 356789999942 12 2566777
Q ss_pred eeEEEEeCCcccccCChHHHHHHHHHH
Q 005773 272 LAVLILDEADRLLELGFSAEIHELVRL 298 (678)
Q Consensus 272 i~~lVvDEah~ll~~gf~~~i~~i~~~ 298 (678)
+.+||.-.. .+.....+..+-+.
T Consensus 100 ~~~Vi~~d~----p~~~~~~~qr~GR~ 122 (172)
T 1t5i_A 100 VNIAFNYDM----PEDSDTYLHRVARA 122 (172)
T ss_dssp CSEEEESSC----CSSHHHHHHHHHHH
T ss_pred CCEEEEECC----CCCHHHHHHHhccc
Confidence 778775332 23344444444433
No 192
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=84.50 E-value=3.5 Score=39.81 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=54.9
Q ss_pred CCceEEEEeccHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcc-----ccc-ccCCCCC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAA-RGLDIIG 438 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~GlDi~~ 438 (678)
.+.++||.+|++..+.++...+.. .++.+..++|+.+...+...+.. ..+|+|+|. .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999998888766654 48899999999988776555542 478999995 222 3457888
Q ss_pred ccEEEEcC
Q 005773 439 VQTVINYA 446 (678)
Q Consensus 439 v~~VI~~d 446 (678)
+++||.-.
T Consensus 177 ~~~lViDE 184 (242)
T 3fe2_A 177 TTYLVLDE 184 (242)
T ss_dssp CCEEEETT
T ss_pred ccEEEEeC
Confidence 99888533
No 193
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.49 E-value=1.2 Score=47.18 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=30.2
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhh
Q 005773 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~---g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~ 178 (678)
+..+|++.+=-....+.|... .+..|.-++...++ ..+.+|+.||+|+|||+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHH
Confidence 346788887444444444331 12223223222211 236899999999999975
No 194
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=83.22 E-value=2.5 Score=46.38 Aligned_cols=75 Identities=15% Similarity=0.062 Sum_probs=63.0
Q ss_pred CceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc------ccccCCCCCccEEE
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV------AARGLDIIGVQTVI 443 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~------~~~GlDi~~v~~VI 443 (678)
.+.+||.+|++..+......|...++.+..+||+.+..++..++..+..|..+||++|.- ....+...++.+||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 478999999999999999999999999999999999999999999999999999999852 12234445677776
Q ss_pred E
Q 005773 444 N 444 (678)
Q Consensus 444 ~ 444 (678)
.
T Consensus 145 i 145 (523)
T 1oyw_A 145 V 145 (523)
T ss_dssp E
T ss_pred E
Confidence 3
No 195
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.20 E-value=0.74 Score=40.79 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=17.5
Q ss_pred HHhcCCCEEEEcCCCchhhhh
Q 005773 158 LALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 158 ~ll~g~dvl~~a~TGsGKT~~ 178 (678)
.+..+.++++.|++|+|||..
T Consensus 23 ~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHH
T ss_pred HhCCCCcEEEECCCCccHHHH
Confidence 345678999999999999974
No 196
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=83.12 E-value=2.1 Score=43.11 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
++-+++.|++|+|||++
T Consensus 105 g~vi~lvG~~GsGKTTl 121 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTT 121 (296)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45677999999999975
No 197
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.11 E-value=1.3 Score=45.19 Aligned_cols=63 Identities=14% Similarity=0.033 Sum_probs=33.3
Q ss_pred HHHHHhc-----CCCEEEEcCCCchhhhhhhhchhHHHhcCC-CCCCCeEEEEEcCcHHH-HHHHHHHHHH
Q 005773 155 CIPLALT-----GRDICGSAITGSGKTAAFALPTLERLLYRP-KRIPAIRVLILTPTREL-AVQVHSMIEK 218 (678)
Q Consensus 155 ~i~~ll~-----g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~vLIl~Ptr~L-a~Q~~~~~~~ 218 (678)
.+..++. |.-+++.|++|+|||.. ++.+...+.... ....+.+++++.--..+ ..++...+..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~l-a~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQL-CHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHH-HHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHH-HHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3555554 35678999999999975 344433322110 01113467777654322 3344444443
No 198
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=82.45 E-value=0.76 Score=44.55 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
|.-++++|++|+|||..
T Consensus 30 G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TCEEEEECCTTSSHHHH
T ss_pred CeEEEEEeCCCCCHHHH
Confidence 45688999999999964
No 199
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=82.44 E-value=4 Score=39.03 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=53.1
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc------cccCCCC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDII 437 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~------~~GlDi~ 437 (678)
.+.++||.+|++..+.++...+... ++.+..++|+.+...+...+ ...+|+|+|.-. ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 4568999999999999888877654 67889999999877665443 357899999632 2345667
Q ss_pred CccEEEE
Q 005773 438 GVQTVIN 444 (678)
Q Consensus 438 ~v~~VI~ 444 (678)
.+++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 7888774
No 200
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.00 E-value=2 Score=50.21 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
+++++.||+|+|||..
T Consensus 192 ~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCEEEECTTSCHHHH
T ss_pred CceEEEcCCCCCHHHH
Confidence 5899999999999975
No 201
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=81.99 E-value=5.9 Score=36.80 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=51.8
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc-----cc-ccCCCC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AA-RGLDII 437 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~-----~~-~GlDi~ 437 (678)
.+.++||.+|++..+.++...+... ++.+..++|+.+.......+ .+..+|+|+|.- +. ..+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3467999999999998888776543 67888999998876543322 356789999962 22 334677
Q ss_pred CccEEEE
Q 005773 438 GVQTVIN 444 (678)
Q Consensus 438 ~v~~VI~ 444 (678)
++++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888884
No 202
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=81.33 E-value=1.4 Score=48.61 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=18.7
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.|..+++.||+|+|||+. +-++...
T Consensus 107 ~g~~vll~Gp~GtGKTtl--ar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL--AKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHH--HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHh
Confidence 367899999999999974 3444444
No 203
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=80.92 E-value=5.4 Score=40.06 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=23.9
Q ss_pred CeeEEEEeCCcccc-cCChHHHHHHHHHHCCCCccEEEEEeccChhH
Q 005773 271 DLAVLILDEADRLL-ELGFSAEIHELVRLCPKRRQTMLFSATLTEDV 316 (678)
Q Consensus 271 ~i~~lVvDEah~ll-~~gf~~~i~~i~~~~~~~~q~il~SATl~~~~ 316 (678)
.+++||||++-.+. +......+..+...+.+..-++.+.++...+.
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~ 226 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEA 226 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHH
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHH
Confidence 56799999995443 22223344444444433333445666644333
No 204
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.68 E-value=1.4 Score=55.53 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=29.9
Q ss_pred HHHHhc------CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcH
Q 005773 156 IPLALT------GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (678)
Q Consensus 156 i~~ll~------g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr 206 (678)
+..++. ++.+++.||+|+|||... +.+......+ +.+++++..--
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA-~ala~ea~~~-----G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLT-LQVIAAAQRE-----GKTCAFIDAEH 1465 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHH-HHHHHHHHTT-----TCCEEEECTTS
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHH-HHHHHHHHHc-----CCcEEEEEccc
Confidence 555665 678999999999999864 3443333322 34577777653
No 205
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=80.66 E-value=1.5 Score=50.46 Aligned_cols=15 Identities=33% Similarity=0.229 Sum_probs=13.5
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
.+++.||||+|||..
T Consensus 523 ~~Ll~Gp~GtGKT~l 537 (758)
T 3pxi_A 523 SFIFLGPTGVGKTEL 537 (758)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 499999999999975
No 206
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=80.33 E-value=4.4 Score=38.93 Aligned_cols=74 Identities=8% Similarity=0.128 Sum_probs=46.2
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcc-----ccc-ccCCCCC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAA-RGLDIIG 438 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~GlDi~~ 438 (678)
.+.++||.+|++..+.++...+... ++.+..++|+...... ...+..+..+|+|+|. .+. ..+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999888877654 5677788887654432 3445567789999993 233 3466777
Q ss_pred ccEEEEc
Q 005773 439 VQTVINY 445 (678)
Q Consensus 439 v~~VI~~ 445 (678)
+++||.=
T Consensus 174 ~~~lViD 180 (237)
T 3bor_A 174 IKMFVLD 180 (237)
T ss_dssp CCEEEEE
T ss_pred CcEEEEC
Confidence 8888853
No 207
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=80.16 E-value=1.5 Score=47.86 Aligned_cols=39 Identities=23% Similarity=-0.026 Sum_probs=25.7
Q ss_pred HHHHHcCCCCCcHHHHHHHHHH-hcCCCEEEEcCCCchhhhh
Q 005773 138 RACEALGYSKPTPIQAACIPLA-LTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 138 ~~l~~~g~~~~~~iQ~~~i~~l-l~g~dvl~~a~TGsGKT~~ 178 (678)
..+..+|. +++.+...+... -.|..++++||||||||+.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34445553 344454555443 4577899999999999975
No 208
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=80.10 E-value=1.6 Score=44.87 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=24.9
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCc
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Pt 205 (678)
|.-+++.|++|+|||.. ++-+...+.. .+.+|+|+..-
T Consensus 46 G~LiiIaG~pG~GKTt~-al~ia~~~a~-----~g~~Vl~fSlE 83 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSL-MMNMVLSALN-----DDRGVAVFSLE 83 (338)
T ss_dssp TCEEEEEECTTSCHHHH-HHHHHHHHHH-----TTCEEEEEESS
T ss_pred CcEEEEEeCCCCCHHHH-HHHHHHHHHH-----cCCeEEEEeCC
Confidence 45577999999999964 4444444433 23467887653
No 209
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=79.91 E-value=2.7 Score=38.98 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=51.5
Q ss_pred CCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHH----hcCC
Q 005773 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA----LRSM 246 (678)
Q Consensus 171 TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~----l~~~ 246 (678)
..+.|... ++-++... ..+.++||.++++.-+..+...+.. .++.+..++|+.+....... ..+.
T Consensus 28 ~~~~K~~~-L~~ll~~~------~~~~k~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~r~~~~~~f~~g~ 96 (185)
T 2jgn_A 28 EESDKRSF-LLDLLNAT------GKDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGK 96 (185)
T ss_dssp CGGGHHHH-HHHHHHHC-------CCSCEEEEESCHHHHHHHHHHHHH----TTCCEEEEC--------CHHHHHHHHTS
T ss_pred CcHHHHHH-HHHHHHhc------CCCCeEEEEECCHHHHHHHHHHHHH----cCCceEEEeCCCCHHHHHHHHHHHHcCC
Confidence 34566543 44444432 1345799999999999988887775 37888999998765543322 2356
Q ss_pred CCEEEECchHHHHHHhccCccCCCCeeEEEE
Q 005773 247 PDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277 (678)
Q Consensus 247 ~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVv 277 (678)
..|+|+|. . +.. .+++..+.+||.
T Consensus 97 ~~vLvaT~-~----~~~--Gldi~~~~~VI~ 120 (185)
T 2jgn_A 97 SPILVATA-V----AAR--GLDISNVKHVIN 120 (185)
T ss_dssp SSEEEEEC-------------CCCSBSEEEE
T ss_pred CeEEEEcC-h----hhc--CCCcccCCEEEE
Confidence 78999993 1 222 566777887776
No 210
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=79.79 E-value=4.2 Score=38.97 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=50.5
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc-----ccc--cCCCC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AAR--GLDII 437 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~-----~~~--GlDi~ 437 (678)
.+.++||.+|++..+.++...+... ++.+..++|+.+.......+ +..+|+|+|.- +.+ .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3568999999999999888777654 47888999987765544333 46789999952 122 36677
Q ss_pred CccEEEEc
Q 005773 438 GVQTVINY 445 (678)
Q Consensus 438 ~v~~VI~~ 445 (678)
.+++||.-
T Consensus 171 ~~~~lViD 178 (236)
T 2pl3_A 171 DLQMLVLD 178 (236)
T ss_dssp TCCEEEET
T ss_pred cccEEEEe
Confidence 88888753
No 211
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=79.46 E-value=8.3 Score=40.22 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=54.8
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCC
Q 005773 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLD 270 (678)
Q Consensus 195 ~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~ 270 (678)
.+.++||.++++..+..+++.+.. .++.+..++|+.+.......+ .+..+|+|+|. .+.. .+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~--Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR--GLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT--TSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH----CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc--CCCcc
Confidence 356899999999999988888776 378889999998866554333 35678999994 3343 67788
Q ss_pred CeeEEEE
Q 005773 271 DLAVLIL 277 (678)
Q Consensus 271 ~i~~lVv 277 (678)
.+++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 8888875
No 212
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=79.13 E-value=7.9 Score=39.91 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=55.0
Q ss_pred CceEEEEeccHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc------cccCCCCC
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIG 438 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~------~~GlDi~~ 438 (678)
+.++||.||++..+.++...+... ++.+..++|+.+....... +..+..+|+|+|.-. ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 468999999999999888777654 7899999999987665443 445778899999532 23467788
Q ss_pred ccEEEE
Q 005773 439 VQTVIN 444 (678)
Q Consensus 439 v~~VI~ 444 (678)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888885
No 213
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=78.98 E-value=4.6 Score=43.02 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=16.2
Q ss_pred CEEEEcCCCchhhhhhhhchhHHH
Q 005773 164 DICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.+++++++|+|||++ ...+...+
T Consensus 102 vI~ivG~~GvGKTT~-a~~LA~~l 124 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTS-VGKLGKFL 124 (433)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHHH
Confidence 566889999999976 34444444
No 214
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=78.75 E-value=2 Score=45.69 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=19.1
Q ss_pred HHHHHHHHHhc--CCCEEEEcCCCchhhhh
Q 005773 151 IQAACIPLALT--GRDICGSAITGSGKTAA 178 (678)
Q Consensus 151 iQ~~~i~~ll~--g~dvl~~a~TGsGKT~~ 178 (678)
-+..++..++. |.-+++.||||||||+.
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 34445544443 34577999999999975
No 215
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=78.56 E-value=6.6 Score=45.48 Aligned_cols=17 Identities=35% Similarity=0.311 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
++.+++.||+|+|||+.
T Consensus 238 ~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCEEEECSCTTSSHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 56799999999999974
No 216
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=78.51 E-value=14 Score=40.47 Aligned_cols=76 Identities=13% Similarity=0.231 Sum_probs=56.9
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCC
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~ 271 (678)
+.++||.|+|+.-|..+++.+..... .++.+..++|+.+.......+ .+..+|+|||. .+.. .+++..
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~--GiDip~ 410 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR--GMDFPN 410 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS--SCCCTT
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhc--CCCccc
Confidence 45799999999999999988887532 377889999998876654433 35678999994 2333 677888
Q ss_pred eeEEEEeC
Q 005773 272 LAVLILDE 279 (678)
Q Consensus 272 i~~lVvDE 279 (678)
+.+||.-.
T Consensus 411 v~~VI~~~ 418 (563)
T 3i5x_A 411 VHEVLQIG 418 (563)
T ss_dssp CCEEEEES
T ss_pred CCEEEEEC
Confidence 88888544
No 217
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=78.01 E-value=7.3 Score=36.16 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=53.0
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc--CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc-----cc-ccCCCCCcc
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLA--ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AA-RGLDIIGVQ 440 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~--~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~-----~~-~GlDi~~v~ 440 (678)
.+.++||.+|++..+.++...+... .+.+..++|+.+.......+. ...+|+|+|.- +. ..+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3568999999999999998888765 467888999887655443332 25789999952 22 346778888
Q ss_pred EEEEc
Q 005773 441 TVINY 445 (678)
Q Consensus 441 ~VI~~ 445 (678)
+||.=
T Consensus 147 ~iViD 151 (207)
T 2gxq_A 147 VAVLD 151 (207)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88853
No 218
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=77.85 E-value=5 Score=38.15 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=49.5
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc---CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc------ccccCCCCCc
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLA---ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV------AARGLDIIGV 439 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~---~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~------~~~GlDi~~v 439 (678)
.+.++||.+|++..+.++...+... ++.+..++|+.+...+...+ . ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4567999999999999998888764 67888899887765543333 2 34789999952 1245677888
Q ss_pred cEEEEc
Q 005773 440 QTVINY 445 (678)
Q Consensus 440 ~~VI~~ 445 (678)
++||.-
T Consensus 169 ~~lViD 174 (228)
T 3iuy_A 169 TYLVID 174 (228)
T ss_dssp CEEEEC
T ss_pred eEEEEE
Confidence 888853
No 219
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=77.44 E-value=3.2 Score=42.13 Aligned_cols=38 Identities=21% Similarity=0.030 Sum_probs=24.4
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCc
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Pt 205 (678)
|.-++++|++|+|||.. ++-+...+... +.+|++++--
T Consensus 68 G~l~li~G~pG~GKTtl-~l~ia~~~a~~-----g~~vl~~slE 105 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAF-ALKQAKNMSDN-----DDVVNLHSLE 105 (315)
T ss_dssp TCEEEEECCTTSSHHHH-HHHHHHHHHTT-----TCEEEEEESS
T ss_pred CcEEEEEeCCCCCHHHH-HHHHHHHHHHc-----CCeEEEEECC
Confidence 45688999999999964 44444333322 2467877643
No 220
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=77.25 E-value=7.9 Score=40.23 Aligned_cols=71 Identities=17% Similarity=0.295 Sum_probs=54.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCC
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~ 271 (678)
..++||.|+++.-|..+++.+... ++.+..++|+.+.......+ .+..+|+|+|. .+.. ++++..
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCAR--GIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTS--SCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cccc--CCCccC
Confidence 458999999999999888888764 67889999998876655433 35678999994 2333 678888
Q ss_pred eeEEEE
Q 005773 272 LAVLIL 277 (678)
Q Consensus 272 i~~lVv 277 (678)
+.+||.
T Consensus 335 ~~~Vi~ 340 (412)
T 3fht_A 335 VSVVIN 340 (412)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 998884
No 221
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=77.23 E-value=2.1 Score=40.74 Aligned_cols=40 Identities=23% Similarity=0.043 Sum_probs=29.5
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 146 SKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 146 ~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
..-+.-|..++..+..|.-+.+.||+|||||+. +-++..+
T Consensus 6 ~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL--l~~l~Gl 45 (208)
T 3b85_A 6 RPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL--AMAKAVQ 45 (208)
T ss_dssp CCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH--HHHHHHH
T ss_pred ccCCHhHHHHHHhccCCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 334556777888888888888999999999974 4444444
No 222
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=76.84 E-value=3.4 Score=41.93 Aligned_cols=17 Identities=29% Similarity=0.192 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
|.-+++.|++|+|||..
T Consensus 98 g~i~~i~G~~gsGKT~l 114 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQI 114 (322)
T ss_dssp TEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 35678999999999965
No 223
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=76.53 E-value=46 Score=33.84 Aligned_cols=77 Identities=12% Similarity=0.220 Sum_probs=57.5
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCC
Q 005773 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLD 270 (678)
Q Consensus 195 ~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~ 270 (678)
...++||.++++.-|..+++.+... ++.+..++|+.+.......+ .+..+|+|+|. .+. ..+++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA--RGIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS--SSCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--cCCCcc
Confidence 3568999999999999888887763 67889999998866654433 34578999994 222 367888
Q ss_pred CeeEEEEeCCcc
Q 005773 271 DLAVLILDEADR 282 (678)
Q Consensus 271 ~i~~lVvDEah~ 282 (678)
.+.+||.-....
T Consensus 311 ~~~~Vi~~~~p~ 322 (395)
T 3pey_A 311 TVSMVVNYDLPT 322 (395)
T ss_dssp TEEEEEESSCCB
T ss_pred cCCEEEEcCCCC
Confidence 999998765543
No 224
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=76.28 E-value=6.4 Score=39.63 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=52.7
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCC
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~ 271 (678)
+.++||.|+++.-+..+++.+.. .++.+..++|+.+...+...+ .+..+|+|+|. .+.. .+++..
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~~--Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAAR--GLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTTC--STTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhhc--Cccccc
Confidence 34689999999998887777654 478899999998876665443 35678999993 2222 577788
Q ss_pred eeEEEE
Q 005773 272 LAVLIL 277 (678)
Q Consensus 272 i~~lVv 277 (678)
+.+||.
T Consensus 97 v~~VI~ 102 (300)
T 3i32_A 97 VDLVVH 102 (300)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 888874
No 225
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=76.16 E-value=4.9 Score=46.18 Aligned_cols=17 Identities=29% Similarity=0.212 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
++++++.|++|+|||..
T Consensus 207 ~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAI 223 (758)
T ss_dssp SCEEEEECCTTSSHHHH
T ss_pred CCCeEEEcCCCCCHHHH
Confidence 46899999999999975
No 226
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=75.61 E-value=4.4 Score=42.66 Aligned_cols=42 Identities=7% Similarity=-0.183 Sum_probs=22.9
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcC
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~P 204 (678)
.-+++.|++|+|||+.....++..+..........+++++.-
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 457799999999997532222222221111112346777754
No 227
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=75.03 E-value=2.1 Score=49.26 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=31.6
Q ss_pred ccCCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhh
Q 005773 123 HANSFMELNLSRPLLRACEALG---YSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~g---~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~ 178 (678)
+..+|.+++.-....+.|...- ...|.-++... +...+.+|+.||.|+|||+.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHH
Confidence 3457888887777777776531 11111111100 01135799999999999975
No 228
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=74.94 E-value=10 Score=41.92 Aligned_cols=77 Identities=13% Similarity=0.229 Sum_probs=57.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCC
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~ 271 (678)
+.++||.|+|+.-|..+++.+..... .++.+..++|+.+.......+ .+..+|+|||. .+.. .+++..
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~--GiDip~ 359 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR--GMDFPN 359 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS--SCCCTT
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhc--CCCccc
Confidence 45899999999999999988887532 377889999998876654433 35678999994 2233 677888
Q ss_pred eeEEEEeCC
Q 005773 272 LAVLILDEA 280 (678)
Q Consensus 272 i~~lVvDEa 280 (678)
+.+||.-..
T Consensus 360 v~~VI~~~~ 368 (579)
T 3sqw_A 360 VHEVLQIGV 368 (579)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEcCC
Confidence 888886543
No 229
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=74.09 E-value=5.4 Score=37.68 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=45.7
Q ss_pred cCCceEEEEeccHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc------cccCCCC
Q 005773 368 TFTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDII 437 (678)
Q Consensus 368 ~~~~~vLVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~------~~GlDi~ 437 (678)
..+.++||.+|++..+.++...+.. .++.+..++|+.+.......+ . ..+|+|+|.-. ...+++.
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~iiv~Tp~~l~~~~~~~~~~~~ 154 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIVVGTPGRVFDNIQRRRFRTD 154 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCEEEECHHHHHHHHHhCCcchh
Confidence 3456899999999998888776654 367888999987765543322 2 37899999532 2456677
Q ss_pred CccEEEE
Q 005773 438 GVQTVIN 444 (678)
Q Consensus 438 ~v~~VI~ 444 (678)
.+++||.
T Consensus 155 ~~~~iVi 161 (224)
T 1qde_A 155 KIKMFIL 161 (224)
T ss_dssp TCCEEEE
T ss_pred hCcEEEE
Confidence 7888884
No 230
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=73.11 E-value=5.4 Score=43.08 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=21.3
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEE
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLIL 202 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl 202 (678)
-+++.|++|+|||+. +..|..++... +++|+|.
T Consensus 295 VI~LVGpNGSGKTTL--l~~LAgll~~~----~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTT--IGKLARQFEQQ----GKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHHHT----TCCEEEE
T ss_pred EEEEECCCcccHHHH--HHHHHHHhhhc----CCeEEEe
Confidence 466999999999974 44555554322 2346665
No 231
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=72.83 E-value=14 Score=38.19 Aligned_cols=71 Identities=11% Similarity=0.220 Sum_probs=53.3
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCC
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~ 271 (678)
..++||.++++.-+..+++.+... ++.+..++|+.+.......+ .+...|+|+|. .+. ..+++..
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT--RGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS--SSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc--cCCCccC
Confidence 458999999999999888888764 67888899998766554332 34678999993 222 2677888
Q ss_pred eeEEEE
Q 005773 272 LAVLIL 277 (678)
Q Consensus 272 i~~lVv 277 (678)
+.+||.
T Consensus 327 ~~~Vi~ 332 (400)
T 1s2m_A 327 VNVVIN 332 (400)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888885
No 232
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=72.37 E-value=9.7 Score=38.67 Aligned_cols=72 Identities=22% Similarity=0.351 Sum_probs=52.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCC
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~ 271 (678)
+.++||.++++.-+..+++.+... ++.+..++|+.+.......+ .+..+|+|+|. .+.. .+++..
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--Gid~~~ 306 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR--GIDVND 306 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH--HCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc--CCCccc
Confidence 456899999999999888888763 77888999988766554332 34678999993 2233 466777
Q ss_pred eeEEEEe
Q 005773 272 LAVLILD 278 (678)
Q Consensus 272 i~~lVvD 278 (678)
+.+||.-
T Consensus 307 ~~~Vi~~ 313 (367)
T 1hv8_A 307 LNCVINY 313 (367)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 8888753
No 233
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=72.28 E-value=10 Score=36.61 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=51.4
Q ss_pred CceEEEEeccHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc------cccCCCCCc
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIGV 439 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~------~~GlDi~~v 439 (678)
+.++||.+|++..+.++...+.. .++.+..++|+.+.......+ ....+|+|+|.-. ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 46899999999999888776654 357788889988765544333 2467899999632 234577888
Q ss_pred cEEEEc
Q 005773 440 QTVINY 445 (678)
Q Consensus 440 ~~VI~~ 445 (678)
++||.-
T Consensus 176 ~~lViD 181 (253)
T 1wrb_A 176 KYIVLD 181 (253)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 888853
No 234
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=72.25 E-value=13 Score=36.23 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=52.5
Q ss_pred CCceEEEEeccHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcc-----ccc--ccCCCC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAA--RGLDII 437 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~-----~~~--~GlDi~ 437 (678)
.+.++||.+|++..+.++...+.. .+..+..++|+.........+ ..| .+|+|+|. .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 356799999999999888777765 367788899988776554433 334 78999994 222 346788
Q ss_pred CccEEEEc
Q 005773 438 GVQTVINY 445 (678)
Q Consensus 438 ~v~~VI~~ 445 (678)
++++||.-
T Consensus 201 ~l~~lViD 208 (262)
T 3ly5_A 201 NLQCLVID 208 (262)
T ss_dssp TCCEEEEC
T ss_pred cCCEEEEc
Confidence 88888853
No 235
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=72.00 E-value=7.5 Score=44.72 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=26.1
Q ss_pred CeeEEEEeCCcccccC------ChH----HHHHHHHHHCCCCccEEEEEeccC
Q 005773 271 DLAVLILDEADRLLEL------GFS----AEIHELVRLCPKRRQTMLFSATLT 313 (678)
Q Consensus 271 ~i~~lVvDEah~ll~~------gf~----~~i~~i~~~~~~~~q~il~SATl~ 313 (678)
.-.+|+|||+|.+... +.. ..+...+..+....+++++-||-.
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~ 349 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSS
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCC
Confidence 3468999999998731 111 223333444555566788888754
No 236
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=71.97 E-value=1.9 Score=46.00 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=32.4
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAV 210 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~ 210 (678)
...++++.|+||||||.. +.+++..++.. +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~~-----g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLLR-----GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHHT-----TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHHC-----CCcEEEEeCCCchhH
Confidence 357899999999999986 44455555442 346889999888853
No 237
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=71.88 E-value=3.5 Score=50.06 Aligned_cols=56 Identities=23% Similarity=0.202 Sum_probs=41.5
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCC------CCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRP------KRIPAIRVLILTPTRELAVQVHSMIEKI 219 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~------~~~~~~~vLIl~Ptr~La~Q~~~~~~~l 219 (678)
..+|.|.-|||||.+-..-++..|.... .......+|+|+=|+..|..+.+.+...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 4599999999999885555565555321 2234567999999999999888877654
No 238
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=71.69 E-value=4.1 Score=37.70 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHhcCC--CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHH
Q 005773 149 TPIQAACIPLALTGR--DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQ 211 (678)
Q Consensus 149 ~~iQ~~~i~~ll~g~--dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q 211 (678)
.+-|..++..++..+ -.++.+.-|++||...+.-++..... .+.+|.||+|+..-...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-----~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE-----QGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH-----TTCCEEEECSTTHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh-----cCeEEEEEcCchHHHHH
Confidence 467888888887754 45689999999998754333333222 24569999999876543
No 239
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=71.32 E-value=1.5 Score=43.30 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=19.2
Q ss_pred hcCCCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 160 LTGRDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 160 l~g~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
..|.-+++.||||||||+. +.++..++
T Consensus 23 ~~g~~v~i~Gp~GsGKSTl--l~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTT--IASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHH--HHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHH--HHHHHHhC
Confidence 3566788999999999974 44444433
No 240
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=71.12 E-value=1.9 Score=44.93 Aligned_cols=27 Identities=33% Similarity=0.302 Sum_probs=20.0
Q ss_pred HhcCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 159 ALTGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 159 ll~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
+..|..+++.||||||||+. +.++..+
T Consensus 172 i~~G~~i~ivG~sGsGKSTl--l~~l~~~ 198 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL--MKALMQE 198 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH--HHHHHTT
T ss_pred HhcCCEEEEECCCCCCHHHH--HHHHHhc
Confidence 34688999999999999974 4444333
No 241
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=70.93 E-value=16 Score=37.85 Aligned_cols=71 Identities=11% Similarity=0.259 Sum_probs=53.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCC
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~ 271 (678)
..++||.|+++.-+..+++.+.. .++.+..++|+.+.......+ .+...|+|+|. .+.. .+++..
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~--Gidi~~ 344 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMRE----ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWAR--GLDVPQ 344 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSS--SCCCTT
T ss_pred CCcEEEEEcCHHHHHHHHHHHHh----CCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhC--cCCccc
Confidence 35899999999999988887776 377889999998866554333 35678999994 2232 677888
Q ss_pred eeEEEE
Q 005773 272 LAVLIL 277 (678)
Q Consensus 272 i~~lVv 277 (678)
+.+||.
T Consensus 345 v~~Vi~ 350 (410)
T 2j0s_A 345 VSLIIN 350 (410)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 988885
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=70.73 E-value=24 Score=37.27 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=13.1
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
+-+++.+++|+|||++
T Consensus 99 ~vi~i~G~~GsGKTT~ 114 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTT 114 (425)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3466889999999975
No 243
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=70.41 E-value=2.1 Score=40.18 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=18.1
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
.|+-+++.||+|+|||+. +-+|..++
T Consensus 3 ~g~~i~lvGpsGaGKSTL--l~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL--LKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 467789999999999974 44454443
No 244
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=70.33 E-value=11 Score=43.32 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=55.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHh-------hcCCceeEEEecCCChHHHHHHhcC---------CCCEEEECchHHHH
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIA-------QFTDIRCCLVVGGLSTKMQETALRS---------MPDIVVATPGRMID 259 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~-------~~~~~~v~~~~g~~~~~~~~~~l~~---------~~dIiv~Tp~~L~~ 259 (678)
++.+||.+|++.-+..+++.+...+ ...++.+..++|+.+...+...+.. ...|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 5689999999999999888887532 2257889999999988777665532 347999994
Q ss_pred HHhccCccCCCCeeEEEE
Q 005773 260 HLRNSMSVDLDDLAVLIL 277 (678)
Q Consensus 260 ~l~~~~~~~l~~i~~lVv 277 (678)
.+.. .+++..+.+||-
T Consensus 378 iae~--GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET--SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH--TCCCTTEEEEEE
T ss_pred HHHh--CcCcCCeEEEEe
Confidence 2333 567778887763
No 245
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.22 E-value=1.2 Score=47.37 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=33.3
Q ss_pred ccCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEcCCCchhhhh
Q 005773 123 HANSFMELNLSRPLLRACEAL---GYSKPTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 123 ~~~~f~~l~l~~~l~~~l~~~---g~~~~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~ 178 (678)
+..+|++.+--....+.|... .+..|.-++...++ ..+.+|+.||+|+|||+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 456899998777777766542 12222222222221 136899999999999975
No 246
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=70.20 E-value=2 Score=44.04 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=20.2
Q ss_pred hcCCCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 160 LTGRDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 160 l~g~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
..|..+++.|+||||||+. +.++..++
T Consensus 169 ~~g~~v~i~G~~GsGKTTl--l~~l~g~~ 195 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY--IKSIMEFI 195 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH--HHHGGGGS
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHhCCC
Confidence 3588999999999999974 44444443
No 247
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=69.90 E-value=2.7 Score=43.50 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=19.8
Q ss_pred HHHHHhcCCC--EEEEcCCCchhhhhh
Q 005773 155 CIPLALTGRD--ICGSAITGSGKTAAF 179 (678)
Q Consensus 155 ~i~~ll~g~d--vl~~a~TGsGKT~~~ 179 (678)
.+..++.|.| ++..|.||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 5666788876 447999999999874
No 248
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=69.64 E-value=1.8 Score=39.92 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=15.8
Q ss_pred hcCCCEEEEcCCCchhhhh
Q 005773 160 LTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 160 l~g~dvl~~a~TGsGKT~~ 178 (678)
+.|+-++++||+|||||+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3566788999999999974
No 249
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=69.21 E-value=3.1 Score=42.44 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=19.5
Q ss_pred HHHHHhcCCC--EEEEcCCCchhhhhh
Q 005773 155 CIPLALTGRD--ICGSAITGSGKTAAF 179 (678)
Q Consensus 155 ~i~~ll~g~d--vl~~a~TGsGKT~~~ 179 (678)
.+..++.|.| ++..|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4556678876 457999999999874
No 250
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=69.14 E-value=11 Score=42.41 Aligned_cols=77 Identities=19% Similarity=0.335 Sum_probs=58.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCC
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~ 271 (678)
+.++||.|+|+..|..+.+.+... ++.+..++|+.+.......+ .+..+|+|+|. .+.. ++++..
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~--GlDip~ 513 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLRE--GLDIPE 513 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCST--TCCCTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhC--CcccCC
Confidence 458999999999998888877763 78888889887766554442 35678999994 2233 677889
Q ss_pred eeEEEEeCCccc
Q 005773 272 LAVLILDEADRL 283 (678)
Q Consensus 272 i~~lVvDEah~l 283 (678)
+++||+=+++..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999988753
No 251
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=68.86 E-value=9 Score=38.39 Aligned_cols=70 Identities=14% Similarity=0.031 Sum_probs=48.8
Q ss_pred CceEEEEeccHHHHHHHHHHHhhc-----CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc------c-ccCCCC
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGLA-----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------A-RGLDII 437 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~------~-~GlDi~ 437 (678)
+.++||.+||+..+.++...+... ++.+..++|+.....+. ....+|||+|.-. . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 447999999999999987777643 46777777765532211 3456799999632 1 357788
Q ss_pred CccEEEEcC
Q 005773 438 GVQTVINYA 446 (678)
Q Consensus 438 ~v~~VI~~d 446 (678)
.+++||.-.
T Consensus 235 ~l~~lVlDE 243 (300)
T 3fmo_B 235 KIKVFVLDE 243 (300)
T ss_dssp GCSEEEETT
T ss_pred hceEEEEeC
Confidence 899988543
No 252
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=68.68 E-value=2.6 Score=42.87 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=19.8
Q ss_pred HHHHHHhcCCCEEEEcCCCchhhhh
Q 005773 154 ACIPLALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 154 ~~i~~ll~g~dvl~~a~TGsGKT~~ 178 (678)
.+...+..++++++.||+|+|||..
T Consensus 38 ~l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHHHcCCeEEEECCCCCcHHHH
Confidence 3344556688999999999999974
No 253
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=68.20 E-value=2.8 Score=43.96 Aligned_cols=42 Identities=33% Similarity=0.360 Sum_probs=28.8
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTREL 208 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~L 208 (678)
.+.++++.|+||||||.. +-.++..+.. .+.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~-~~~~~~~~~~-----~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFT-AKMLLLREYM-----QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHH-HHHHHHHHHT-----TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHH-HHHHHHHHHH-----CCCEEEEEeCCcCH
Confidence 567899999999999975 3334333332 23467888887654
No 254
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=68.07 E-value=5.6 Score=37.54 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=48.9
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc--------CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc-----cc-ccC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLA--------ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AA-RGL 434 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~--------~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~-----~~-~Gl 434 (678)
.+.++||.+|++..+.++...+... ++.+..++|+.+....... + .+..+|+|+|.- +. ..+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK---L-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC---C-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH---c-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 3568999999999998887766543 6788888998765432211 1 235679999952 22 245
Q ss_pred CCCCccEEEE
Q 005773 435 DIIGVQTVIN 444 (678)
Q Consensus 435 Di~~v~~VI~ 444 (678)
++..+++||.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 6677888774
No 255
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=68.06 E-value=5.8 Score=42.15 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=41.3
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECc
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 254 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp 254 (678)
+.++||+||++.-+..+++.+... ++++..++|............+..+|+|+|.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 347999999999999988888764 7888999987433333333346789999994
No 256
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=67.84 E-value=16 Score=38.61 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=52.3
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCCeeE
Q 005773 199 VLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 274 (678)
Q Consensus 199 vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~ 274 (678)
+||.|+++.-|..+++.+.. .++.+..++|+.+.......+ .+...|+|||. .+.. .+++.++++
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~r--GlDi~~v~~ 371 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSE----KEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASR--GLDIKNIKH 371 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHH----TTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTS--SCCCTTCCE
T ss_pred EEEEEeCcHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhC--CCCcccCCE
Confidence 89999999999988887776 378889999998876655443 34678999994 2333 677888888
Q ss_pred EEE
Q 005773 275 LIL 277 (678)
Q Consensus 275 lVv 277 (678)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 257
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=67.69 E-value=7.3 Score=38.01 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.+..+++.|++|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 467899999999999974
No 258
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=67.51 E-value=3.6 Score=42.12 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=20.5
Q ss_pred HHHHHHhcCCC--EEEEcCCCchhhhhh
Q 005773 154 ACIPLALTGRD--ICGSAITGSGKTAAF 179 (678)
Q Consensus 154 ~~i~~ll~g~d--vl~~a~TGsGKT~~~ 179 (678)
..+..++.|.| ++..|+||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 36677788887 447999999999874
No 259
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=67.30 E-value=15 Score=38.64 Aligned_cols=95 Identities=23% Similarity=0.307 Sum_probs=60.3
Q ss_pred CCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEec--------CCChHHHHHH
Q 005773 171 TGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG--------GLSTKMQETA 242 (678)
Q Consensus 171 TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g--------~~~~~~~~~~ 242 (678)
..++|... +.-++....... .+.++||.++++..+..+++.+... ++.+..++| +.+...+...
T Consensus 340 ~~~~k~~~-l~~~l~~~~~~~---~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~ 411 (494)
T 1wp9_A 340 LDHPKMDK-LKEIIREQLQRK---QNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLI 411 (494)
T ss_dssp CSCHHHHH-HHHHHHHHHHHC---TTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHH
T ss_pred CCChHHHH-HHHHHHHHhccC---CCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHH
Confidence 45666654 455555543211 2457999999999999888887764 788888888 5554433322
Q ss_pred h----cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeCC
Q 005773 243 L----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEA 280 (678)
Q Consensus 243 l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEa 280 (678)
+ .+...|+|+|. .+.. ++++..+.+||+-+.
T Consensus 412 ~~~F~~~~~~vLv~T~-----~~~~--Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 412 LDEFARGEFNVLVATS-----VGEE--GLDVPEVDLVVFYEP 446 (494)
T ss_dssp HHHHHHTSCSEEEECG-----GGGG--GGGSTTCCEEEESSC
T ss_pred HHHHhcCCceEEEECC-----cccc--CCCchhCCEEEEeCC
Confidence 2 34578999993 1222 677888888885443
No 260
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=67.10 E-value=3.3 Score=42.65 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=19.1
Q ss_pred HHHHHhcCCCE--EEEcCCCchhhhhh
Q 005773 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (678)
Q Consensus 155 ~i~~ll~g~dv--l~~a~TGsGKT~~~ 179 (678)
.+..++.|.|+ +..|+||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 45556778764 47899999999874
No 261
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=66.99 E-value=3.7 Score=42.66 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=19.2
Q ss_pred HHHHHhcCCC--EEEEcCCCchhhhhh
Q 005773 155 CIPLALTGRD--ICGSAITGSGKTAAF 179 (678)
Q Consensus 155 ~i~~ll~g~d--vl~~a~TGsGKT~~~ 179 (678)
.+..++.|.| ++..|.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 4556678876 447999999999873
No 262
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=66.98 E-value=3.7 Score=42.37 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=19.0
Q ss_pred HHHHHhcCCC--EEEEcCCCchhhhhh
Q 005773 155 CIPLALTGRD--ICGSAITGSGKTAAF 179 (678)
Q Consensus 155 ~i~~ll~g~d--vl~~a~TGsGKT~~~ 179 (678)
.+..++.|.| ++..|.||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 4455678876 447999999999873
No 263
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=66.88 E-value=3.7 Score=42.69 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=19.7
Q ss_pred HHHHHHhcCCCE--EEEcCCCchhhhhh
Q 005773 154 ACIPLALTGRDI--CGSAITGSGKTAAF 179 (678)
Q Consensus 154 ~~i~~ll~g~dv--l~~a~TGsGKT~~~ 179 (678)
..+..++.|.|+ +..|.||||||.+.
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 345567788764 47999999999874
No 264
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=66.87 E-value=2.3 Score=39.84 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.++.+++.|++|||||+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 467899999999999985
No 265
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=66.81 E-value=6.4 Score=40.65 Aligned_cols=18 Identities=39% Similarity=0.283 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
....+++.||+|+|||+.
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 456899999999999975
No 266
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=66.69 E-value=6.7 Score=41.80 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=46.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEE
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVL 275 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~l 275 (678)
+.++||+||++.-|..+++.+... ++++..++|............+..+|+|||. .+.. .+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e~--GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAEM--GANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STTC--CTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhhe--eeccC-ceEE
Confidence 357999999999999988888764 6888999985544433343445689999994 2333 56666 7776
Q ss_pred E
Q 005773 276 I 276 (678)
Q Consensus 276 V 276 (678)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 267
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=66.65 E-value=3.6 Score=42.51 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=19.0
Q ss_pred HHHHHhcCCC--EEEEcCCCchhhhhh
Q 005773 155 CIPLALTGRD--ICGSAITGSGKTAAF 179 (678)
Q Consensus 155 ~i~~ll~g~d--vl~~a~TGsGKT~~~ 179 (678)
.+..++.|.| ++..|+||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 3455678876 447999999999874
No 268
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=66.48 E-value=3.6 Score=42.48 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=19.3
Q ss_pred HHHHHhcCCC--EEEEcCCCchhhhhh
Q 005773 155 CIPLALTGRD--ICGSAITGSGKTAAF 179 (678)
Q Consensus 155 ~i~~ll~g~d--vl~~a~TGsGKT~~~ 179 (678)
.+..++.|.| ++..|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4556778876 447999999999874
No 269
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=66.47 E-value=3.6 Score=42.51 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=19.4
Q ss_pred HHHHHhcCCCE--EEEcCCCchhhhhh
Q 005773 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (678)
Q Consensus 155 ~i~~ll~g~dv--l~~a~TGsGKT~~~ 179 (678)
.+..++.|.|+ +..|+||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 45567788764 47899999999873
No 270
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=66.43 E-value=10 Score=45.37 Aligned_cols=74 Identities=9% Similarity=0.101 Sum_probs=56.4
Q ss_pred CCceEEEEeccHHHHHHHHHHHhh----cCC----ceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc-ccccCC-CCC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGL----AAL----KAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-AARGLD-IIG 438 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~----~~~----~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~-~~~GlD-i~~ 438 (678)
.+.++||.+||+..+.++...+.. .++ .+..+||+.+...+......+.+ .+|+|+|.- +..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 357899999999999888776654 356 88999999999988888877776 899999963 211111 557
Q ss_pred ccEEEE
Q 005773 439 VQTVIN 444 (678)
Q Consensus 439 v~~VI~ 444 (678)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888874
No 271
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=66.27 E-value=3.6 Score=42.58 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=19.9
Q ss_pred HHHHHHhcCCCE--EEEcCCCchhhhhh
Q 005773 154 ACIPLALTGRDI--CGSAITGSGKTAAF 179 (678)
Q Consensus 154 ~~i~~ll~g~dv--l~~a~TGsGKT~~~ 179 (678)
..+..++.|.|+ +..|+||||||.+.
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 355667788875 46899999999873
No 272
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=66.22 E-value=3.6 Score=42.55 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=20.0
Q ss_pred HHHHHHhcCCCE--EEEcCCCchhhhhh
Q 005773 154 ACIPLALTGRDI--CGSAITGSGKTAAF 179 (678)
Q Consensus 154 ~~i~~ll~g~dv--l~~a~TGsGKT~~~ 179 (678)
..+..++.|.|+ +..|+||||||.+.
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 355667788774 47899999999874
No 273
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=66.17 E-value=3.6 Score=42.77 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=19.2
Q ss_pred HHHHHhcCCCE--EEEcCCCchhhhhh
Q 005773 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (678)
Q Consensus 155 ~i~~ll~g~dv--l~~a~TGsGKT~~~ 179 (678)
.+..++.|.|+ +..|+||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 45567788764 47899999999873
No 274
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=65.71 E-value=8.4 Score=39.16 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.2
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
+-+++.+++|+|||++
T Consensus 106 ~vI~ivG~~G~GKTT~ 121 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTS 121 (320)
T ss_dssp EEEEEESSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3466899999999975
No 275
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=65.62 E-value=5.4 Score=37.77 Aligned_cols=51 Identities=12% Similarity=0.139 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC----CCEEEEcCCCchhhhhhhhchhHHH
Q 005773 134 RPLLRACEALGYSKPTPIQAACIPLALTG----RDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 134 ~~l~~~l~~~g~~~~~~iQ~~~i~~ll~g----~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
..+.+.|+-.|+. +... ...+..++.+ +.+++.||.|+|||.. +..++..+
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~-a~ala~~l 82 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYF-GMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHH-HHHHHHHh
Confidence 3566666554443 3333 3445555554 3588999999999975 44454443
No 276
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=65.54 E-value=2.4 Score=38.85 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
++.+++.|++|||||+.
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 46788999999999975
No 277
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=65.44 E-value=8.3 Score=43.59 Aligned_cols=69 Identities=9% Similarity=0.063 Sum_probs=46.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEE
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVL 275 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~l 275 (678)
+.++||+||++.-+..+++.+... ++++..++|............+..+|+|||. .+.. .+++. +.+|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd-----v~e~--GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISEM--GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECG-----GGGT--TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECc-----hhhc--ceeeC-CcEE
Confidence 457999999999999888777653 7888999985322222222345678999993 2333 45666 6665
Q ss_pred E
Q 005773 276 I 276 (678)
Q Consensus 276 V 276 (678)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 278
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=65.40 E-value=9 Score=38.06 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
...+++.||+|+|||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999975
No 279
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=65.32 E-value=2.2 Score=40.08 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=16.9
Q ss_pred HhcCCCEEEEcCCCchhhhh
Q 005773 159 ALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 159 ll~g~dvl~~a~TGsGKT~~ 178 (678)
+..|+-++++|++|||||+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 44577899999999999975
No 280
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=65.30 E-value=16 Score=41.19 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=57.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHH---h-cCCCCEEEECchHHHHHHhccCccCCCC
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA---L-RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~---l-~~~~dIiv~Tp~~L~~~l~~~~~~~l~~ 271 (678)
+.++||.|+|+..|..+.+.+.. .++.+..++|+.+....... + .+..+|+|+|. .+. .++++..
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~--~GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVE----HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLR--EGLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCC--TTCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHh----cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhh--cCccCCC
Confidence 45899999999999988887776 37788888988776655444 2 34678999983 122 3677888
Q ss_pred eeEEEEeCCccc
Q 005773 272 LAVLILDEADRL 283 (678)
Q Consensus 272 i~~lVvDEah~l 283 (678)
+++||+=+++..
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 999998887753
No 281
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=65.07 E-value=21 Score=36.63 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=52.7
Q ss_pred CCceEEEEeccHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc------cccCCCCC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARGLDIIG 438 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~------~~GlDi~~ 438 (678)
.+.++||.+|++..+.++...+.. .++.+..++|+.+..+....+. ..+|+|+|.-. ...+.+..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999999998888776654 4688999999998876655543 45799999421 23456677
Q ss_pred ccEEEEc
Q 005773 439 VQTVINY 445 (678)
Q Consensus 439 v~~VI~~ 445 (678)
+++||.-
T Consensus 163 ~~~vIiD 169 (394)
T 1fuu_A 163 IKMFILD 169 (394)
T ss_dssp CCEEEEE
T ss_pred CcEEEEE
Confidence 8888853
No 282
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=65.00 E-value=2.6 Score=43.75 Aligned_cols=18 Identities=28% Similarity=0.291 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.+.-+++.||||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 445688999999999975
No 283
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=64.99 E-value=3.8 Score=42.67 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=19.5
Q ss_pred HHHHHHhcCCC--EEEEcCCCchhhhhh
Q 005773 154 ACIPLALTGRD--ICGSAITGSGKTAAF 179 (678)
Q Consensus 154 ~~i~~ll~g~d--vl~~a~TGsGKT~~~ 179 (678)
..+..++.|.| ++..|.||||||.+.
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCcceec
Confidence 34555677876 447999999999874
No 284
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=64.97 E-value=3 Score=42.18 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=19.8
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
.|.-+.+.||+|||||+ ++-+|..++
T Consensus 125 ~Ge~vaIvGpsGsGKST--Ll~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSM--LCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhhhc
Confidence 36678899999999997 455566655
No 285
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=64.94 E-value=3.2 Score=45.18 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCchhhhh
Q 005773 149 TPIQAACIPLALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 149 ~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~ 178 (678)
...-..++..+..+.++++.||+|+|||..
T Consensus 28 ~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 28 SHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 334455566677889999999999999974
No 286
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=64.80 E-value=2.5 Score=37.97 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=13.0
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
-++++|++|||||+.
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367999999999975
No 287
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=64.80 E-value=3.5 Score=42.69 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=19.7
Q ss_pred HHHHHHhcCCC--EEEEcCCCchhhhhh
Q 005773 154 ACIPLALTGRD--ICGSAITGSGKTAAF 179 (678)
Q Consensus 154 ~~i~~ll~g~d--vl~~a~TGsGKT~~~ 179 (678)
..+..++.|.| ++..|.||||||.+.
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 34556778876 447999999999874
No 288
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=64.57 E-value=4.3 Score=41.83 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=19.2
Q ss_pred HHHHHhcCCCE--EEEcCCCchhhhhh
Q 005773 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (678)
Q Consensus 155 ~i~~ll~g~dv--l~~a~TGsGKT~~~ 179 (678)
.+..++.|.|+ +..|+||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 45566788764 47899999999874
No 289
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=64.57 E-value=3.6 Score=43.37 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=19.2
Q ss_pred HHHHHhcCCC--EEEEcCCCchhhhhh
Q 005773 155 CIPLALTGRD--ICGSAITGSGKTAAF 179 (678)
Q Consensus 155 ~i~~ll~g~d--vl~~a~TGsGKT~~~ 179 (678)
.+..++.|.| ++..|.||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4556678876 447899999999874
No 290
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=64.53 E-value=2.4 Score=44.22 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=18.7
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
.|..+++.||||||||+. +.++..++
T Consensus 135 ~g~~i~ivG~~GsGKTTl--l~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTT--IASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHhhc
Confidence 466788999999999974 44444443
No 291
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=64.42 E-value=1.9 Score=39.47 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.++.+++.|++|||||++
T Consensus 10 ~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred cCCeEEEEeCCCCCHHHH
Confidence 467899999999999985
No 292
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=64.23 E-value=3.3 Score=43.03 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=19.9
Q ss_pred HHHHHhcCCCE--EEEcCCCchhhhhh
Q 005773 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (678)
Q Consensus 155 ~i~~ll~g~dv--l~~a~TGsGKT~~~ 179 (678)
.+..++.|.|+ +..|.||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 56677888764 46899999999874
No 293
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=64.22 E-value=2.7 Score=39.68 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.|+-+++.||+|+|||+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 356678999999999975
No 294
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=64.20 E-value=2.7 Score=38.25 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
++-++++|++|||||++
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45688999999999975
No 295
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=64.00 E-value=3.9 Score=43.06 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=20.4
Q ss_pred HHHHHhcCCCE--EEEcCCCchhhhhh
Q 005773 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (678)
Q Consensus 155 ~i~~ll~g~dv--l~~a~TGsGKT~~~ 179 (678)
.+..++.|.|+ +..|.||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 67778889875 47899999999874
No 296
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=67.73 E-value=1.4 Score=40.12 Aligned_cols=71 Identities=18% Similarity=0.348 Sum_probs=48.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCC
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDD 271 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~ 271 (678)
+.++||.++++..+..+++.+... ++.+..++|+.+.......+ .+...|+|+|. .+.. .+++..
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~--Gid~~~ 98 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAAR--GIDIPD 98 (170)
Confidence 457899999999988888777653 67788888887665544333 23467999992 1222 455666
Q ss_pred eeEEEE
Q 005773 272 LAVLIL 277 (678)
Q Consensus 272 i~~lVv 277 (678)
+.+||.
T Consensus 99 ~~~Vi~ 104 (170)
T 2yjt_D 99 VSHVFN 104 (170)
Confidence 666664
No 297
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=63.91 E-value=19 Score=38.99 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=16.1
Q ss_pred CEEEEcCCCchhhhhhhhchhHHH
Q 005773 164 DICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.++++|++|+|||+. +..+...+
T Consensus 103 vI~ivG~~GvGKTTl-~~kLA~~l 125 (504)
T 2j37_W 103 VIMFVGLQGSGKTTT-CSKLAYYY 125 (504)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHHH
Confidence 467899999999976 33343333
No 298
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=63.67 E-value=4.5 Score=43.13 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=19.6
Q ss_pred HHHHHHhcCCC--EEEEcCCCchhhhhh
Q 005773 154 ACIPLALTGRD--ICGSAITGSGKTAAF 179 (678)
Q Consensus 154 ~~i~~ll~g~d--vl~~a~TGsGKT~~~ 179 (678)
..+..++.|.| ++..|.||||||.+.
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34556678876 447999999999874
No 299
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=63.62 E-value=3.5 Score=43.07 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=18.4
Q ss_pred HHHHhcCCC--EEEEcCCCchhhhhh
Q 005773 156 IPLALTGRD--ICGSAITGSGKTAAF 179 (678)
Q Consensus 156 i~~ll~g~d--vl~~a~TGsGKT~~~ 179 (678)
+..++.|.| ++..|+||||||.+.
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 345677876 447999999999874
No 300
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=63.51 E-value=4 Score=42.62 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=19.3
Q ss_pred HHHHHhcCCC--EEEEcCCCchhhhhh
Q 005773 155 CIPLALTGRD--ICGSAITGSGKTAAF 179 (678)
Q Consensus 155 ~i~~ll~g~d--vl~~a~TGsGKT~~~ 179 (678)
.+..++.|.| ++..|.||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4556778876 457999999999874
No 301
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=63.40 E-value=7.8 Score=38.24 Aligned_cols=43 Identities=26% Similarity=0.179 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCCCCcHHHHH-HHHHHhcCC-----CEEEEcCCCchhhhhh
Q 005773 134 RPLLRACEALGYSKPTPIQAA-CIPLALTGR-----DICGSAITGSGKTAAF 179 (678)
Q Consensus 134 ~~l~~~l~~~g~~~~~~iQ~~-~i~~ll~g~-----dvl~~a~TGsGKT~~~ 179 (678)
.++.+.|+-.||. |++-. ++...+.++ .+++.||.|+|||+.+
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 3677888877776 55533 244555543 4889999999999753
No 302
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=63.16 E-value=4.3 Score=42.88 Aligned_cols=26 Identities=42% Similarity=0.487 Sum_probs=20.9
Q ss_pred HHHHHHhcCCCE--EEEcCCCchhhhhh
Q 005773 154 ACIPLALTGRDI--CGSAITGSGKTAAF 179 (678)
Q Consensus 154 ~~i~~ll~g~dv--l~~a~TGsGKT~~~ 179 (678)
..+..++.|.|+ +..|.||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 367778899874 47899999999873
No 303
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=63.03 E-value=2.8 Score=41.09 Aligned_cols=14 Identities=36% Similarity=0.045 Sum_probs=12.5
Q ss_pred EEEEcCCCchhhhh
Q 005773 165 ICGSAITGSGKTAA 178 (678)
Q Consensus 165 vl~~a~TGsGKT~~ 178 (678)
++++|+||||||+.
T Consensus 4 i~I~G~~GSGKSTl 17 (253)
T 2ze6_A 4 HLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCcCHHHH
Confidence 67999999999974
No 304
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=62.56 E-value=16 Score=39.72 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=47.5
Q ss_pred CceEEEEeccHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc-----ccc-C-CCCC
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-----ARG-L-DIIG 438 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~-----~~G-l-Di~~ 438 (678)
+.++||.+|++..+.++...+.. .++.+..+||+.+...+...+. ...+|+|+|.-. ..| + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 67899999999888877766654 3899999999987665433332 236799998532 222 4 6778
Q ss_pred ccEEEE
Q 005773 439 VQTVIN 444 (678)
Q Consensus 439 v~~VI~ 444 (678)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 898885
No 305
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=62.49 E-value=3.8 Score=39.06 Aligned_cols=26 Identities=15% Similarity=0.041 Sum_probs=19.1
Q ss_pred hcCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 160 LTGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 160 l~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
-.|+-+.+.||+|+|||+. +-+|..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTL--l~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL--IKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH--HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHHhh
Confidence 3577888999999999974 4445444
No 306
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=62.48 E-value=18 Score=41.53 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=52.9
Q ss_pred ccCCceEEEEeccHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc-c-----c-----
Q 005773 367 KTFTSKVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-A-----A----- 431 (678)
Q Consensus 367 ~~~~~~vLVF~~s~~~~~~l~~~L~----~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~-~-----~----- 431 (678)
...+.+++|.++|+..|.+.+.++. ..|+++..+.|+++..+|.... ..+|+++|+- + .
T Consensus 121 aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~ 194 (844)
T 1tf5_A 121 ALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVL 194 (844)
T ss_dssp HTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhc
Confidence 3446789999999999988776654 4589999999999987665542 3689999962 2 1
Q ss_pred --ccCCCCCccEEE
Q 005773 432 --RGLDIIGVQTVI 443 (678)
Q Consensus 432 --~GlDi~~v~~VI 443 (678)
..+.+.++.++|
T Consensus 195 ~~~~l~lr~~~~lV 208 (844)
T 1tf5_A 195 YKEQMVQRPLHFAV 208 (844)
T ss_dssp SGGGCCCCCCCEEE
T ss_pred chhhhcccCCCEEE
Confidence 235667888877
No 307
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=62.30 E-value=3 Score=38.95 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.|.-+++.|++|||||+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999974
No 308
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=62.23 E-value=3 Score=42.17 Aligned_cols=22 Identities=36% Similarity=0.209 Sum_probs=15.7
Q ss_pred CEEEEcCCCchhhhhhhhchhHH
Q 005773 164 DICGSAITGSGKTAAFALPTLER 186 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~ 186 (678)
-++++||||||||.. ...+.+.
T Consensus 12 ~i~i~GptgsGKt~l-a~~La~~ 33 (316)
T 3foz_A 12 AIFLMGPTASGKTAL-AIELRKI 33 (316)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHH
T ss_pred EEEEECCCccCHHHH-HHHHHHh
Confidence 367899999999975 3444433
No 309
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=61.68 E-value=8 Score=48.19 Aligned_cols=122 Identities=13% Similarity=0.168 Sum_probs=66.4
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHH
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETA 242 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~ 242 (678)
+-+.+.+|.|||||+. .++++...... +..++++.+--+|.... ++.+ |+++.
T Consensus 1432 ~~iei~g~~~sGkttl-~~~~~a~~~~~-----g~~~~~i~~e~~~~~~~---~~~~----Gv~~~-------------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTL-TLQVIAAAQRE-----GKTCAFIDAEHALDPIY---ARKL----GVDID-------------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHH-HHHHHHHHHHT-----TCCEEEECTTSCCCHHH---HHHT----TCCGG--------------
T ss_pred CEEEEEcCCCCCHHHH-HHHHHHHHHhc-----CCeEEEEecCCCCCHHH---HHHc----CCCHH--------------
Confidence 5678999999999986 67777665544 34578887766664432 3332 33221
Q ss_pred hcCCCCEEEECchHHHHHHhccC-ccCCCCeeEEEEeCCcccccC------------ChH-----HHHHHHHHHCCCCcc
Q 005773 243 LRSMPDIVVATPGRMIDHLRNSM-SVDLDDLAVLILDEADRLLEL------------GFS-----AEIHELVRLCPKRRQ 304 (678)
Q Consensus 243 l~~~~dIiv~Tp~~L~~~l~~~~-~~~l~~i~~lVvDEah~ll~~------------gf~-----~~i~~i~~~~~~~~q 304 (678)
+++++-|..--++|.-.. .+.-..+++||||..-.+... |.. ..+..+...+.+..-
T Consensus 1485 -----~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~ 1559 (1706)
T 3cmw_A 1485 -----NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNT 1559 (1706)
T ss_dssp -----GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -----HeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCc
Confidence 255555633222221100 111235789999999987632 222 223334344444445
Q ss_pred EEEEEeccChhH
Q 005773 305 TMLFSATLTEDV 316 (678)
Q Consensus 305 ~il~SATl~~~~ 316 (678)
+++|...+...+
T Consensus 1560 ~~i~~~~~~~~~ 1571 (1706)
T 3cmw_A 1560 LLIFINQIRMKI 1571 (1706)
T ss_dssp EEEEEECBC---
T ss_pred EEEEeecccccc
Confidence 677777766544
No 310
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=61.57 E-value=12 Score=40.00 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=47.2
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEEE
Q 005773 197 IRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLI 276 (678)
Q Consensus 197 ~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lV 276 (678)
.++||.+|++.-|.++++.+.. .++.+..++|............+..+|+|||. .+.. .+++.. .+||
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~----~g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~~--GiDip~-~~VI 256 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRK----SGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM--GANFRA-GRVI 256 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHT----TTCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGGS--SCCCCC-SEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHH----cCCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHHh--CcCCCC-CEEE
Confidence 4799999999999988887765 36788888887654333333345689999993 2333 566666 5555
No 311
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=61.50 E-value=3.7 Score=37.03 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=17.3
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLER 186 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~ 186 (678)
+..+++.|++|||||+. .-+|..
T Consensus 4 ~~~i~l~G~~GsGKSTl--~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI--GRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHH--HHHHHH
T ss_pred CCeEEEECCCCCCHHHH--HHHHHH
Confidence 46788999999999974 444444
No 312
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=61.43 E-value=3.1 Score=42.18 Aligned_cols=15 Identities=27% Similarity=0.147 Sum_probs=13.0
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
-++++||||||||..
T Consensus 5 ~i~i~GptgsGKt~l 19 (322)
T 3exa_A 5 LVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCcCCHHHH
Confidence 467899999999975
No 313
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=61.18 E-value=12 Score=40.63 Aligned_cols=38 Identities=11% Similarity=-0.104 Sum_probs=24.2
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcC
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~P 204 (678)
|.-+++.|++|+|||.. ++-++..+.... +.+|+++.-
T Consensus 242 G~l~li~G~pG~GKT~l-al~~a~~~a~~~----g~~vl~~s~ 279 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTF-VRQQALQWGTAM----GKKVGLAML 279 (503)
T ss_dssp TCEEEEEESSCHHHHHH-HHHHHHHHTTTS----CCCEEEEES
T ss_pred CeEEEEeecCCCCchHH-HHHHHHHHHHhc----CCcEEEEec
Confidence 45678999999999975 455544443221 234677654
No 314
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=61.16 E-value=5 Score=42.72 Aligned_cols=16 Identities=44% Similarity=0.445 Sum_probs=13.8
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
+.+++.|++|+|||+.
T Consensus 100 ~vI~ivG~~GvGKTTl 115 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTT 115 (432)
T ss_dssp CCEEEECCSSSSTTHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3678999999999975
No 315
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=61.07 E-value=3.7 Score=42.35 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=19.5
Q ss_pred HHHHHhcCCCE--EEEcCCCchhhhhh
Q 005773 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (678)
Q Consensus 155 ~i~~ll~g~dv--l~~a~TGsGKT~~~ 179 (678)
.+..++.|.|+ +..|.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 55666788774 47999999999874
No 316
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=61.06 E-value=3.2 Score=42.55 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
+-++++||||||||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4588999999999975
No 317
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=60.85 E-value=2.7 Score=38.78 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.|.-+++.|++|||||+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466688999999999974
No 318
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=60.75 E-value=32 Score=35.49 Aligned_cols=74 Identities=8% Similarity=0.103 Sum_probs=53.3
Q ss_pred CCceEEEEeccHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc-----cc-ccCCCCC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AA-RGLDIIG 438 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~-----~~-~GlDi~~ 438 (678)
.+.++||.+|++..+.++...+.. .+..+..++|+...... ...+..+..+|+|+|.- +. ..+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 467899999999998888777654 36788888888765543 34555678899999952 22 3456777
Q ss_pred ccEEEEc
Q 005773 439 VQTVINY 445 (678)
Q Consensus 439 v~~VI~~ 445 (678)
+++||.=
T Consensus 184 ~~~vViD 190 (414)
T 3eiq_A 184 IKMFVLD 190 (414)
T ss_dssp CCEEEEC
T ss_pred CcEEEEE
Confidence 8888743
No 319
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=60.60 E-value=15 Score=36.85 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=12.6
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
-+++.+++|+|||+.
T Consensus 100 vi~i~G~~G~GKTT~ 114 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTT 114 (297)
T ss_dssp EEEEECSSCSSTTHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466889999999975
No 320
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=60.53 E-value=3.5 Score=38.42 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=18.1
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.|.-+.+.||+|||||+. +-+|..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl--~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL--VRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCcEEEEECcCCCCHHHH--HHHHHhh
Confidence 466678999999999974 4444443
No 321
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=60.49 E-value=3.5 Score=37.97 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.+..++++|++|||||++
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356789999999999985
No 322
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=60.38 E-value=3.4 Score=37.88 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
+.-+++.|++|||||++
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999985
No 323
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=60.21 E-value=5.4 Score=38.40 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=49.8
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc-----ccc---cCCC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV-----AAR---GLDI 436 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~-----~~~---GlDi 436 (678)
.+.++||.+|++..+.++...+... ++.+..++|+.....+ ......+..+|+|+|.- +.. ++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3457999999999999888877654 6777777765322211 11223456789999942 222 4788
Q ss_pred CCccEEEEcC
Q 005773 437 IGVQTVINYA 446 (678)
Q Consensus 437 ~~v~~VI~~d 446 (678)
.++++||.-.
T Consensus 174 ~~~~~lViDE 183 (245)
T 3dkp_A 174 ASVEWLVVDE 183 (245)
T ss_dssp TTCCEEEESS
T ss_pred ccCcEEEEeC
Confidence 8899888543
No 324
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=60.14 E-value=3.9 Score=37.68 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=16.5
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHH
Q 005773 163 RDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
+-+.+.||+|+|||+. +-+|..+
T Consensus 2 ~ii~l~GpsGaGKsTl--~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL--LKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHH--HHHHHHH
T ss_pred CEEEEECCCCCCHHHH--HHHHHhh
Confidence 4477999999999974 4444443
No 325
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=59.45 E-value=4.2 Score=42.34 Aligned_cols=25 Identities=40% Similarity=0.450 Sum_probs=19.5
Q ss_pred HHHHHhcCCC--EEEEcCCCchhhhhh
Q 005773 155 CIPLALTGRD--ICGSAITGSGKTAAF 179 (678)
Q Consensus 155 ~i~~ll~g~d--vl~~a~TGsGKT~~~ 179 (678)
.+..++.|.| ++..|.||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5666778876 447899999999874
No 326
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=59.18 E-value=4.3 Score=41.91 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=20.0
Q ss_pred HHHHHhcCCCE--EEEcCCCchhhhhh
Q 005773 155 CIPLALTGRDI--CGSAITGSGKTAAF 179 (678)
Q Consensus 155 ~i~~ll~g~dv--l~~a~TGsGKT~~~ 179 (678)
.+..++.|.|+ +..|+||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 56677888874 46899999999874
No 327
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=59.17 E-value=3.7 Score=37.21 Aligned_cols=15 Identities=33% Similarity=0.277 Sum_probs=13.0
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
-++++|++|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 367999999999975
No 328
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=59.15 E-value=8.3 Score=41.89 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=19.4
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
.+.++++.|.||||||.+ +-.++..++
T Consensus 166 ~~pHlLIaG~TGSGKSt~-L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG-VNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHH-HHHHHHHHH
Confidence 357899999999999975 444443333
No 329
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=59.13 E-value=4.2 Score=38.25 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=19.7
Q ss_pred HHhcCCCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 158 LALTGRDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 158 ~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
.+-.|.-+.+.||+|||||+. +-++..++
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL--l~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV--VRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH--HHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 455677788999999999974 44554443
No 330
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=59.07 E-value=3.7 Score=38.62 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=16.2
Q ss_pred hcCCCEEEEcCCCchhhhh
Q 005773 160 LTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 160 l~g~dvl~~a~TGsGKT~~ 178 (678)
+.|+-++++||+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3677788999999999975
No 331
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=59.03 E-value=12 Score=40.64 Aligned_cols=71 Identities=15% Similarity=0.257 Sum_probs=49.9
Q ss_pred CceEEEEeccHHHHHHHHHHHhhc----CCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc-----ccc-C-CCCC
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGLA----ALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-----ARG-L-DIIG 438 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~~----~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~-----~~G-l-Di~~ 438 (678)
+.++||.+|++..+.++...+... ++.+..+||+.+...+...+. +..+|+|+|.-. ..+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999998888776666543 899999999986654433222 246799998532 222 3 5667
Q ss_pred ccEEEE
Q 005773 439 VQTVIN 444 (678)
Q Consensus 439 v~~VI~ 444 (678)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888884
No 332
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=58.93 E-value=5 Score=41.50 Aligned_cols=19 Identities=37% Similarity=0.368 Sum_probs=15.6
Q ss_pred cCCC--EEEEcCCCchhhhhh
Q 005773 161 TGRD--ICGSAITGSGKTAAF 179 (678)
Q Consensus 161 ~g~d--vl~~a~TGsGKT~~~ 179 (678)
.|.+ ++..|.||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 578999999999874
No 333
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=58.63 E-value=5.8 Score=40.03 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=19.0
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhc
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLY 189 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~ 189 (678)
|.-+.+.||+|||||+. +..+..++.
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 44567899999999974 555655554
No 334
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=58.49 E-value=23 Score=40.98 Aligned_cols=72 Identities=19% Similarity=0.148 Sum_probs=52.9
Q ss_pred ccCCceEEEEeccHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc------c-----
Q 005773 367 KTFTSKVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------A----- 431 (678)
Q Consensus 367 ~~~~~~vLVF~~s~~~~~~l~~~L~----~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~------~----- 431 (678)
...+.+++|.++|...|.+.+.++. ..|++++.+.|+++..+|.... ..+|+++|+-- .
T Consensus 149 aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~ 222 (922)
T 1nkt_A 149 ALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAH 222 (922)
T ss_dssp HTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhc
Confidence 3446789999999999887776654 4699999999999987665543 36899999621 1
Q ss_pred --ccCCCCCccEEEE
Q 005773 432 --RGLDIIGVQTVIN 444 (678)
Q Consensus 432 --~GlDi~~v~~VI~ 444 (678)
..+.+.++.++|.
T Consensus 223 ~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 223 SLDDLVQRGHHYAIV 237 (922)
T ss_dssp SGGGCCCCCCCEEEE
T ss_pred cHhhhccCCCCEEEE
Confidence 1356677887773
No 335
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=58.34 E-value=20 Score=41.14 Aligned_cols=71 Identities=11% Similarity=-0.033 Sum_probs=52.0
Q ss_pred cCCceEEEEeccHHHHHHHHHHHh----hcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc------ccc----
Q 005773 368 TFTSKVIIFSGTKQAAHRLKILFG----LAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA------ARG---- 433 (678)
Q Consensus 368 ~~~~~vLVF~~s~~~~~~l~~~L~----~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~------~~G---- 433 (678)
..+.+++|.++|+..|.+.+..+. ..|+++..+.|+++...|.... ..+|+|+|+-- ..+
T Consensus 113 l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~ 186 (853)
T 2fsf_A 113 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFS 186 (853)
T ss_dssp TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhcc
Confidence 346789999999999987776554 4589999999999986554433 36899999631 222
Q ss_pred ---CCCCCccEEEE
Q 005773 434 ---LDIIGVQTVIN 444 (678)
Q Consensus 434 ---lDi~~v~~VI~ 444 (678)
+...++.++|.
T Consensus 187 ~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 187 PEERVQRKLHYALV 200 (853)
T ss_dssp GGGCCCCSCCEEEE
T ss_pred HhHhcccCCcEEEE
Confidence 55677888773
No 336
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=58.05 E-value=3.5 Score=38.86 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
|+-+++.||||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 56688999999999964
No 337
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=58.05 E-value=3.9 Score=36.71 Aligned_cols=15 Identities=13% Similarity=-0.199 Sum_probs=13.1
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
-+++.|+.|||||++
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367999999999985
No 338
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=57.85 E-value=5 Score=39.27 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=17.3
Q ss_pred HhcCCCEEEEcCCCchhhhh
Q 005773 159 ALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 159 ll~g~dvl~~a~TGsGKT~~ 178 (678)
.+.|..+++.|++|||||++
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 34589999999999999985
No 339
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=57.78 E-value=5.3 Score=39.07 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
.+.+++.||+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 35699999999999975
No 340
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=57.30 E-value=3.6 Score=37.44 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchhhhhh
Q 005773 162 GRDICGSAITGSGKTAAF 179 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~ 179 (678)
|.-+.+.|++|||||+.+
T Consensus 9 gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 455779999999999753
No 341
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=57.12 E-value=4.4 Score=41.57 Aligned_cols=15 Identities=40% Similarity=0.195 Sum_probs=13.1
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
-++++||||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 477999999999975
No 342
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=56.93 E-value=5.1 Score=39.69 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=25.3
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHH-HHHHHH--hcCCCEEEEcCCCchhhhh
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQA-ACIPLA--LTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~-~~i~~l--l~g~dvl~~a~TGsGKT~~ 178 (678)
..+|.+++--..+.+.+...- ..|+.. .++..+ .-.+.+++.||+|+|||+.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 456888876666666665420 112211 122211 0124489999999999974
No 343
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=56.87 E-value=3.1 Score=38.08 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.|..+++.|++|||||+.
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345688999999999985
No 344
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=56.79 E-value=4.4 Score=38.75 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=18.3
Q ss_pred HhcCCCEEEEcCCCchhhhhhhhchhHH
Q 005773 159 ALTGRDICGSAITGSGKTAAFALPTLER 186 (678)
Q Consensus 159 ll~g~dvl~~a~TGsGKT~~~~l~~l~~ 186 (678)
+-.|.-+++.||+|+|||+. +-+|..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL--lk~L~g 38 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL--IQALLK 38 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH--HHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH--HHHHhc
Confidence 44677788999999999984 444433
No 345
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=56.67 E-value=4.4 Score=37.79 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=17.9
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLER 186 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~ 186 (678)
.|.-+++.|++|||||+. +-+|..
T Consensus 28 ~g~~i~l~G~~GsGKSTl--~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI--AHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHH--HHHHHH
T ss_pred CCcEEEEECCCCCCHHHH--HHHHHH
Confidence 466788999999999974 344443
No 346
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=56.58 E-value=4.3 Score=38.18 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=17.5
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
|.-+.+.|++|||||+. +-+|..++
T Consensus 22 g~~v~I~G~sGsGKSTl--~~~l~~~~ 46 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL--SNPLAAAL 46 (208)
T ss_dssp CEEEEEECCTTSCTHHH--HHHHHHHH
T ss_pred CeEEEEECCCCCCHHHH--HHHHHHHH
Confidence 44566999999999974 44454444
No 347
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=56.45 E-value=5.1 Score=48.57 Aligned_cols=32 Identities=13% Similarity=0.007 Sum_probs=24.6
Q ss_pred ceEEEEeccHH-HHHHHHHHHhhcCCceeeccC
Q 005773 371 SKVIIFSGTKQ-AAHRLKILFGLAALKAAELHG 402 (678)
Q Consensus 371 ~~vLVF~~s~~-~~~~l~~~L~~~~~~~~~lhg 402 (678)
.-+.|.+++.. .+..+...|...++.+....+
T Consensus 343 ~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 343 KDVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp GGEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred hheEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 45888888874 677888889888888776544
No 348
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=56.36 E-value=6.1 Score=39.80 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
....+++.|++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 457899999999999974
No 349
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=55.91 E-value=33 Score=39.76 Aligned_cols=58 Identities=17% Similarity=0.067 Sum_probs=45.0
Q ss_pred hccCCceEEEEeccHHHHHHHHHHH----hhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 005773 366 SKTFTSKVIIFSGTKQAAHRLKILF----GLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDV 429 (678)
Q Consensus 366 ~~~~~~~vLVF~~s~~~~~~l~~~L----~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~ 429 (678)
....+.+++|.++|...|.+.+..+ ...|+++..+.|+++..+|..+. ..+|+++|+.
T Consensus 116 ~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 116 NALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp HHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred HHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 3345678999999999888776655 45699999999999987766654 3789999963
No 350
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=55.81 E-value=17 Score=41.08 Aligned_cols=106 Identities=16% Similarity=0.193 Sum_probs=61.9
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHH--hhcCCceeEEEecC--------CChHHHHHHh----cCCCCEEEECchHHHHHH
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKI--AQFTDIRCCLVVGG--------LSTKMQETAL----RSMPDIVVATPGRMIDHL 261 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l--~~~~~~~v~~~~g~--------~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l 261 (678)
+.++||.++++..+..+++.+... ....++++..++|+ .+...+...+ .+..+|+|+|. .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 457999999999999988888753 11236888899998 6666554433 34578999993 12
Q ss_pred hccCccCCCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEEecc
Q 005773 262 RNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATL 312 (678)
Q Consensus 262 ~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~SATl 312 (678)
. .++++..+.+||.=. +.|.....++.+-+.-.....+++++..-
T Consensus 475 ~--~GIDip~v~~VI~~d----~p~s~~~~~Qr~GRArr~g~~~~l~~~~~ 519 (699)
T 4gl2_A 475 E--EGLDIKECNIVIRYG----LVTNEIAMVQARGRARADESTYVLVAHSG 519 (699)
T ss_dssp C--TTSCCCSCCCCEEES----CCCCHHHHHHHHTTSCSSSCEEEEEEESS
T ss_pred c--cCCccccCCEEEEeC----CCCCHHHHHHHcCCCCCCCceEEEEEeCC
Confidence 2 367788888887322 33445555555544222233455554433
No 351
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=55.73 E-value=5.3 Score=37.15 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.0
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
|-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999975
No 352
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=55.63 E-value=4.7 Score=41.52 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=17.9
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
++.+++.||+|+|||.. +-.+...+
T Consensus 70 ~~~vLl~GppGtGKT~l-a~~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI-AMGMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHH-HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHh
Confidence 35799999999999975 33344343
No 353
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=55.60 E-value=4.3 Score=39.54 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
.+.+++.||+|+|||+.
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 35689999999999975
No 354
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=55.47 E-value=73 Score=34.03 Aligned_cols=74 Identities=14% Similarity=0.211 Sum_probs=49.2
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh----cCCCCEEEECchHHHHHHhccCccCCCCee
Q 005773 198 RVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL----RSMPDIVVATPGRMIDHLRNSMSVDLDDLA 273 (678)
Q Consensus 198 ~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~ 273 (678)
..+|++.+..-+..+.+.+.. .+.++..++|+.+.......+ .+..+|+|+|+..+-. ++++..+.
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~----~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~------GiDip~v~ 418 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKN----EYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST------GISVKNLH 418 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHT----TCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH------SCCCCSEE
T ss_pred CeEEEEecHHHHHHHHHHHHH----cCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc------ccccccCc
Confidence 344445545555555555554 345888899988766544322 4567899999766532 67788999
Q ss_pred EEEEeCCc
Q 005773 274 VLILDEAD 281 (678)
Q Consensus 274 ~lVvDEah 281 (678)
+||+..+.
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99988776
No 355
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=55.28 E-value=6.3 Score=40.50 Aligned_cols=50 Identities=10% Similarity=-0.014 Sum_probs=28.6
Q ss_pred HHHHhc-----CCCEEEEcCCCchhhhhhhhchhHHHhc-CCCCCCCeEEEEEcCcH
Q 005773 156 IPLALT-----GRDICGSAITGSGKTAAFALPTLERLLY-RPKRIPAIRVLILTPTR 206 (678)
Q Consensus 156 i~~ll~-----g~dvl~~a~TGsGKT~~~~l~~l~~l~~-~~~~~~~~~vLIl~Ptr 206 (678)
+..++. |.-+++.|++|+|||.. ++.+...... ......+.+++++.-..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtl-a~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQL-SHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHH-HHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHH-HHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 555664 34577999999999975 4444333221 11111245677776544
No 356
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=55.11 E-value=4.1 Score=36.90 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
|.-+++.|++|||||+.
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45678999999999975
No 357
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=54.75 E-value=4.9 Score=42.21 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=15.4
Q ss_pred EEEEcCCCchhhhhhhhchhHH
Q 005773 165 ICGSAITGSGKTAAFALPTLER 186 (678)
Q Consensus 165 vl~~a~TGsGKT~~~~l~~l~~ 186 (678)
++++||||||||.. ...+...
T Consensus 5 i~i~GptgsGKttl-a~~La~~ 25 (409)
T 3eph_A 5 IVIAGTTGVGKSQL-SIQLAQK 25 (409)
T ss_dssp EEEEECSSSSHHHH-HHHHHHH
T ss_pred EEEECcchhhHHHH-HHHHHHH
Confidence 67999999999975 3444443
No 358
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=54.64 E-value=5.7 Score=36.53 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=15.6
Q ss_pred CEEEEcCCCchhhhhhhhchhHHH
Q 005773 164 DICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.+.+.||+|+|||+. +-++..+
T Consensus 2 ~i~l~G~nGsGKTTL--l~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL--VKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHH
Confidence 367899999999974 3444433
No 359
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=54.56 E-value=5.4 Score=38.52 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=18.2
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.|.-+.+.||+|||||+ ++-++..+
T Consensus 30 ~Ge~~~iiG~nGsGKST--Ll~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST--MLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTTS
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhcC
Confidence 45667799999999997 35555443
No 360
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=54.49 E-value=20 Score=39.94 Aligned_cols=69 Identities=12% Similarity=0.048 Sum_probs=47.3
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeEE
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVL 275 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~l 275 (678)
..++||.++|+.-|..+++.+... ++++..++|............+..+|+|||. .+.. .+++. +.+|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~r--GiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM--GANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGT--TCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHc--CcccC-ceEE
Confidence 347999999999999888888764 7788888886433322333345689999994 2333 45554 6665
Q ss_pred E
Q 005773 276 I 276 (678)
Q Consensus 276 V 276 (678)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 3
No 361
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=54.37 E-value=6.3 Score=37.08 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=21.1
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCchhhhh
Q 005773 148 PTPIQAACIPLALTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 148 ~~~iQ~~~i~~ll~g~dvl~~a~TGsGKT~~ 178 (678)
.++.+... ..+..|.-+++.|++|||||+.
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 34555554 3344567788999999999975
No 362
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=54.31 E-value=4.7 Score=41.03 Aligned_cols=15 Identities=33% Similarity=0.222 Sum_probs=13.3
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
.++++||||||||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999975
No 363
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=54.15 E-value=11 Score=49.47 Aligned_cols=47 Identities=23% Similarity=0.298 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHH-HH---HHHhcCCCEEEEcCCCchhhhhh
Q 005773 132 LSRPLLRACEALGYSKPTPIQAA-CI---PLALTGRDICGSAITGSGKTAAF 179 (678)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~iQ~~-~i---~~ll~g~dvl~~a~TGsGKT~~~ 179 (678)
+...+.+.+...|+. +++.+.. ++ ..+...+.+++.||||||||.++
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~ 940 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATW 940 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHH
Confidence 445677788888887 5665533 22 23344678999999999999864
No 364
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=53.67 E-value=12 Score=41.25 Aligned_cols=43 Identities=21% Similarity=0.379 Sum_probs=27.0
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr 206 (678)
..++++.|.||||||.+ +-.++..++.... ....+++++=|-.
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl~~~s-P~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSILFKST-PSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHHTTCC-TTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHHHhCC-CcceEEEEeCCCh
Confidence 36899999999999976 4455555543321 1234566665653
No 365
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=53.22 E-value=5.3 Score=37.23 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=14.1
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
.-++++|++|||||+.
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999985
No 366
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=53.18 E-value=5.3 Score=36.69 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=12.9
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
-+++.|++|||||+.
T Consensus 4 ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 4 LYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 467899999999985
No 367
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=52.97 E-value=19 Score=40.37 Aligned_cols=67 Identities=19% Similarity=0.163 Sum_probs=48.5
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECchHHHHHHhccCccCCCCeeE
Q 005773 195 PAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 274 (678)
Q Consensus 195 ~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~ 274 (678)
...++||.+||+.-+.++++.+.. .++.+..++|+.+.... ..++.+|+|+|. .+.. .+++. +++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~----~g~~v~~lHG~l~q~er---~~~~~~VLVATd-----Vaer--GIDId-V~~ 459 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSG----LGINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMT--GYTGD-FDS 459 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHH--HCCCC-BSE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHh----CCCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHc--cCCCC-CcE
Confidence 456899999999999988887775 37889999999876542 235568999994 2333 34444 666
Q ss_pred EE
Q 005773 275 LI 276 (678)
Q Consensus 275 lV 276 (678)
||
T Consensus 460 VI 461 (666)
T 3o8b_A 460 VI 461 (666)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 368
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=52.87 E-value=5.7 Score=36.55 Aligned_cols=19 Identities=26% Similarity=0.113 Sum_probs=15.9
Q ss_pred hcCCCEEEEcCCCchhhhh
Q 005773 160 LTGRDICGSAITGSGKTAA 178 (678)
Q Consensus 160 l~g~dvl~~a~TGsGKT~~ 178 (678)
..+.-+++.|++|||||++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TTSCEEEEEECTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3456788999999999985
No 369
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=52.32 E-value=27 Score=34.74 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=50.8
Q ss_pred CceEEEEeccHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc-----c-ccCCCCCc
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-----A-RGLDIIGV 439 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~-----~-~GlDi~~v 439 (678)
+.++||.+|++..+.++...+.. .+..+..++|+.+.......+ . ..+|+|+|.-. . ..+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV---R--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH---T--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc---C--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 57899999999999888877764 367899999998876654433 2 37799999532 1 23456777
Q ss_pred cEEEE
Q 005773 440 QTVIN 444 (678)
Q Consensus 440 ~~VI~ 444 (678)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88774
No 370
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=51.65 E-value=6 Score=36.71 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.|.-+++.|+.|||||++
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356688999999999985
No 371
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=51.62 E-value=6.1 Score=35.97 Aligned_cols=22 Identities=18% Similarity=0.051 Sum_probs=15.7
Q ss_pred CEEEEcCCCchhhhhhhhchhHHH
Q 005773 164 DICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
-.++.|++|||||.. +-++..+
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHH
T ss_pred cEEEECCCCCCHHHH--HHHHHHH
Confidence 456999999999974 4444443
No 372
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=51.47 E-value=5.9 Score=40.03 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=18.7
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.|.-+.+.||+|||||+. +-++..+
T Consensus 79 ~Ge~vaivG~sGsGKSTL--l~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI--LRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCchHHHH--HHHHHcC
Confidence 467788999999999974 4555444
No 373
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=51.47 E-value=26 Score=40.37 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=47.1
Q ss_pred CceEEEEeccHHHHHHHHHHHhh----cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc-----ccc-C-CCCC
Q 005773 370 TSKVIIFSGTKQAAHRLKILFGL----AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-----ARG-L-DIIG 438 (678)
Q Consensus 370 ~~~vLVF~~s~~~~~~l~~~L~~----~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~-----~~G-l-Di~~ 438 (678)
+.++||.+|++..+.+....+.. .++.+..+||+.+...+...+. +..+|+|+|.-. ..+ + .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 67899999999888887665554 3899999999987665433332 357899999531 222 3 5667
Q ss_pred ccEEEE
Q 005773 439 VQTVIN 444 (678)
Q Consensus 439 v~~VI~ 444 (678)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888884
No 374
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=51.41 E-value=5.5 Score=36.56 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
+.-++++|++|||||+.
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34578999999999985
No 375
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=51.33 E-value=7.7 Score=39.31 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=12.4
Q ss_pred EEEEcCCCchhhhh
Q 005773 165 ICGSAITGSGKTAA 178 (678)
Q Consensus 165 vl~~a~TGsGKT~~ 178 (678)
+++.|+.|||||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 67899999999984
No 376
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=51.09 E-value=8 Score=35.95 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=27.4
Q ss_pred CCCeeEEEEeCCccc--ccCChHHHHHHHHHHCCCCccEEEEEeccC
Q 005773 269 LDDLAVLILDEADRL--LELGFSAEIHELVRLCPKRRQTMLFSATLT 313 (678)
Q Consensus 269 l~~i~~lVvDEah~l--l~~gf~~~i~~i~~~~~~~~q~il~SATl~ 313 (678)
....+++|+||+..+ .+..|...+..++... ..+|+-+.|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeecC
Confidence 456789999998877 3445777777776632 22454466753
No 377
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=50.93 E-value=6 Score=36.23 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=13.8
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
.-+++.|++|||||+.
T Consensus 4 ~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578999999999985
No 378
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=50.83 E-value=5.8 Score=39.63 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=13.6
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
.-++++|++|||||+.
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3478999999999975
No 379
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=50.82 E-value=6.5 Score=40.79 Aligned_cols=17 Identities=41% Similarity=0.331 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
...+++.||+|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 46899999999999975
No 380
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=50.55 E-value=6.6 Score=36.75 Aligned_cols=24 Identities=33% Similarity=0.147 Sum_probs=16.8
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
|.-+.+.|++|||||+. +-+|..+
T Consensus 6 ~~~i~i~G~~GsGKSTl--~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL--AQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHH--HHHHHHH
T ss_pred cEEEEEECCCCCCHHHH--HHHHHHH
Confidence 33466999999999974 4444444
No 381
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=50.53 E-value=6.8 Score=35.47 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
+.+++.|++|||||+.
T Consensus 5 ~~i~i~G~~GsGKsTl 20 (175)
T 1via_A 5 KNIVFIGFMGSGKSTL 20 (175)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 3688999999999975
No 382
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=50.52 E-value=6.9 Score=36.95 Aligned_cols=17 Identities=29% Similarity=0.007 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
|.-+.+.||+|+|||+.
T Consensus 25 G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SEEEEEEESTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45677999999999974
No 383
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=50.47 E-value=5.4 Score=38.15 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=11.0
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.|.-+.+.||+|||||+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466677999999999974
No 384
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=50.40 E-value=6.1 Score=35.49 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
+++++.|+.|||||++
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 5788999999999985
No 385
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=50.38 E-value=7.2 Score=39.28 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=18.4
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhc
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLY 189 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~ 189 (678)
|.-+.+.|++|+|||+. +..+..++.
T Consensus 100 g~vi~lvG~nGsGKTTl--l~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTS--LGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHH--HHHHHHHHH
Confidence 34566999999999984 455555544
No 386
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=50.09 E-value=5.6 Score=37.06 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.|.-+++.|++|||||+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356677999999999974
No 387
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=49.87 E-value=19 Score=47.66 Aligned_cols=78 Identities=9% Similarity=0.090 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHcCCCCCcHHHH-HHHH---HHhcCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHH
Q 005773 132 LSRPLLRACEALGYSKPTPIQA-ACIP---LALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRE 207 (678)
Q Consensus 132 l~~~l~~~l~~~g~~~~~~iQ~-~~i~---~ll~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~ 207 (678)
|...+.+.+..+|+. +++.+. +++. .+.....+++.||||||||.++ .+|...+..-.+ ....+.+|-|-.-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~--~~L~~al~~l~~-~~~~~~~iNPKai 948 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSW--EVYLEAIEQVDN-IKSEAHVMDPKAI 948 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHH--HHHHHHHTTTTT-CEEEEEEECTTTS
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHH--HHHHHHHHHhhC-CCceEEEECCCCC
Confidence 456778888889887 555553 3332 2333556889999999999864 445444433211 2345567777644
Q ss_pred HHHHHH
Q 005773 208 LAVQVH 213 (678)
Q Consensus 208 La~Q~~ 213 (678)
-..|+|
T Consensus 949 t~~eLy 954 (3245)
T 3vkg_A 949 TKDQLF 954 (3245)
T ss_dssp CHHHHH
T ss_pred chhhhc
Confidence 444444
No 388
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=49.79 E-value=7.7 Score=34.40 Aligned_cols=15 Identities=27% Similarity=0.107 Sum_probs=12.7
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
-.++.||+|||||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 357899999999975
No 389
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=49.40 E-value=6 Score=36.14 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=13.1
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
-+++.|+.|||||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999975
No 390
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=49.26 E-value=8.7 Score=39.05 Aligned_cols=17 Identities=24% Similarity=0.179 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
...+++.||+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45799999999999974
No 391
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=49.24 E-value=5.9 Score=39.61 Aligned_cols=16 Identities=19% Similarity=-0.025 Sum_probs=13.8
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
+.+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4678999999999975
No 392
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=49.17 E-value=6.5 Score=38.12 Aligned_cols=52 Identities=10% Similarity=-0.034 Sum_probs=27.8
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCCEEEEcCCCchhhhh
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQAACIPLAL--TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ~~~i~~ll--~g~dvl~~a~TGsGKT~~ 178 (678)
..+|+++.-.......+..+-.. + -...++..+- -.+.+++.||+|+|||+.
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~-~--~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEF-L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHH-H--HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH-H--HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 35677776666655555443110 0 0011222110 124589999999999974
No 393
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=48.90 E-value=13 Score=33.80 Aligned_cols=22 Identities=18% Similarity=-0.053 Sum_probs=15.9
Q ss_pred EEEEcCCCchhhhhhhhchhHHH
Q 005773 165 ICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 165 vl~~a~TGsGKT~~~~l~~l~~l 187 (678)
+.+.|+.|||||+. +..++..+
T Consensus 7 i~i~G~sGsGKTTl-~~~L~~~l 28 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL-MEKWVAAA 28 (169)
T ss_dssp EEEECCTTSSHHHH-HHHHHHHH
T ss_pred EEEECCCCCCHHHH-HHHHHHhh
Confidence 56899999999974 44445444
No 394
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=48.83 E-value=7.7 Score=38.74 Aligned_cols=15 Identities=33% Similarity=0.220 Sum_probs=13.6
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
.+++.||+|+|||..
T Consensus 49 ~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 49 SFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEESCSSSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 689999999999975
No 395
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=48.59 E-value=63 Score=26.49 Aligned_cols=112 Identities=16% Similarity=0.173 Sum_probs=69.0
Q ss_pred EEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccccccC-------CCCCccEEEEc
Q 005773 373 VIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVAARGL-------DIIGVQTVINY 445 (678)
Q Consensus 373 vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl-------Di~~v~~VI~~ 445 (678)
.+||.+.......+...++..|+.+..++++.....|.+-++.|.....++--..+--.-.- -.|.++.|+..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvviv 84 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIV 84 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 46788888888888888888999999999999999999999999877666544333211010 13556665554
Q ss_pred CCCC--ChhHHHHHHhhcccCCCceEEEEEeeCCcHHHHHHHHHHh
Q 005773 446 ACPR--DLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA 489 (678)
Q Consensus 446 d~p~--s~~~yiQr~GRagR~g~~G~~i~l~~~~d~~~l~~i~~~~ 489 (678)
.... -+..|+..+-- | | -.+++.+...+...-+...+.+
T Consensus 85 ttddkewikdfieeake--r-g--vevfvvynnkdddrrkeaqqef 125 (162)
T 2l82_A 85 TTDDKEWIKDFIEEAKE--R-G--VEVFVVYNNKDDDRRKEAQQEF 125 (162)
T ss_dssp ECCCHHHHHHHHHHHHH--T-T--CEEEEEEECSCHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHh--c-C--cEEEEEecCCCchhHHHHHHHh
Confidence 3322 23344443321 1 2 2455556665555444444433
No 396
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=48.54 E-value=6.6 Score=40.75 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.4
Q ss_pred CEEEEcCCCchhhhhh
Q 005773 164 DICGSAITGSGKTAAF 179 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~ 179 (678)
-.++.||||||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4669999999999753
No 397
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=48.54 E-value=6.5 Score=42.13 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
++.+++.||+|+|||+.
T Consensus 63 ~~~iLl~GppGtGKT~l 79 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTAL 79 (456)
T ss_dssp TCEEEEECCTTSSHHHH
T ss_pred CCeEEEECCCcCCHHHH
Confidence 36799999999999975
No 398
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=48.46 E-value=6.9 Score=36.99 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
+..+++.|++|||||++
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45688999999999985
No 399
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=48.22 E-value=5.8 Score=36.95 Aligned_cols=18 Identities=39% Similarity=0.477 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.+.-+++.|+.|||||+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 345688999999999985
No 400
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=47.82 E-value=33 Score=37.23 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=0.0
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~ 240 (678)
.|.-+++.|++|+|||+.....+-... ..+.+++++++..... |+...+..+.-. .
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~------~~G~~vi~~~~ee~~~-~l~~~~~~~g~~-----------------~ 335 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENAC------ANKERAILFAYEESRA-QLLRNAYSWGMD-----------------F 335 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHH------TTTCCEEEEESSSCHH-HHHHHHHTTSCC-----------------H
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH------hCCCCEEEEEEeCCHH-HHHHHHHHcCCC-----------------H
Q ss_pred HHhcCCCCEEE-------ECchHHHHHHhccCccCCCCeeEEEEeCCcccccCC-----hHHHHHHHHHHCCCCccEEEE
Q 005773 241 TALRSMPDIVV-------ATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELG-----FSAEIHELVRLCPKRRQTMLF 308 (678)
Q Consensus 241 ~~l~~~~dIiv-------~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~g-----f~~~i~~i~~~~~~~~q~il~ 308 (678)
..+.....+-+ .+.+.....+.. .....+.++||+| -=.-++.. ....+..++..+....-++++
T Consensus 336 ~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a--~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvil 412 (525)
T 1tf7_A 336 EEMERQNLLKIVCAYPESAGLEDHLQIIKS--EINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLF 412 (525)
T ss_dssp HHHHHTTSEEECCCCGGGSCHHHHHHHHHH--HHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhCCCEEEEEeccccCCHHHHHHHHHH--HHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEE
Q ss_pred Ee
Q 005773 309 SA 310 (678)
Q Consensus 309 SA 310 (678)
+.
T Consensus 413 vs 414 (525)
T 1tf7_A 413 TN 414 (525)
T ss_dssp EE
T ss_pred EE
No 401
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=47.81 E-value=6.9 Score=36.04 Aligned_cols=18 Identities=28% Similarity=0.148 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.+.-++++|++|||||++
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356688999999999975
No 402
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=47.73 E-value=7.7 Score=36.71 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
+..+++.|++|||||++
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQ 21 (222)
T ss_dssp SCCEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 35689999999999985
No 403
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=47.53 E-value=8.5 Score=35.04 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=13.8
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
..++++|++|||||++
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3588999999999975
No 404
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=47.46 E-value=7.3 Score=36.60 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=12.8
Q ss_pred EEEEcCCCchhhhh
Q 005773 165 ICGSAITGSGKTAA 178 (678)
Q Consensus 165 vl~~a~TGsGKT~~ 178 (678)
+++.|+.|||||++
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 78999999999985
No 405
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=47.34 E-value=8.3 Score=37.54 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=18.3
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.|.-+.+.||+|||||+. +-++..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTL--l~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL--TKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 466677999999999974 4445443
No 406
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=47.30 E-value=14 Score=41.63 Aligned_cols=76 Identities=18% Similarity=0.317 Sum_probs=42.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEec--------CCChHHHHHH---hc--CCCCEEEECchHHHHHHh
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVG--------GLSTKMQETA---LR--SMPDIVVATPGRMIDHLR 262 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g--------~~~~~~~~~~---l~--~~~dIiv~Tp~~L~~~l~ 262 (678)
+.++||.++++..+..+++.+........+++..++| +.+...+... +. +..+|+|+|. .+.
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v~~ 472 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----VAD 472 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-----SSC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----hhh
Confidence 4579999999999999999888754444477777765 5544444332 22 4578999993 122
Q ss_pred ccCccCCCCeeEEEEe
Q 005773 263 NSMSVDLDDLAVLILD 278 (678)
Q Consensus 263 ~~~~~~l~~i~~lVvD 278 (678)
.++++..+.+||.=
T Consensus 473 --~GiDip~v~~VI~~ 486 (696)
T 2ykg_A 473 --EGIDIAQCNLVILY 486 (696)
T ss_dssp --CC---CCCSEEEEE
T ss_pred --cCCcCccCCEEEEe
Confidence 36778888888853
No 407
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=47.26 E-value=14 Score=34.17 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=43.2
Q ss_pred CCceEEEEeccHHHHHH-HHHHHhh---cCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcccc-----cc-------
Q 005773 369 FTSKVIIFSGTKQAAHR-LKILFGL---AALKAAELHGNLTQAQRLEALELFRKQHVDFLIATDVA-----AR------- 432 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~-l~~~L~~---~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~~~-----~~------- 432 (678)
.+.++||+|+++..+.+ +...+.. .++.+..++|+.....+...+. +..+|+|+|.-. ..
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~ 156 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDA 156 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCccccc
Confidence 35789999999988877 5554443 3678888998765433222211 246788988532 11
Q ss_pred cCCCCCccEEEE
Q 005773 433 GLDIIGVQTVIN 444 (678)
Q Consensus 433 GlDi~~v~~VI~ 444 (678)
++.+.++++||.
T Consensus 157 ~~~~~~~~~iIi 168 (216)
T 3b6e_A 157 GVQLSDFSLIII 168 (216)
T ss_dssp CCCGGGCSEEEE
T ss_pred ccchhcccEEEE
Confidence 245566777764
No 408
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=47.20 E-value=6.8 Score=37.29 Aligned_cols=17 Identities=24% Similarity=0.089 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
+..+++.|++|||||++
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45688999999999985
No 409
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=47.16 E-value=8.2 Score=34.60 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.8
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
+.+++.|++|||||++
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3578999999999975
No 410
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=47.13 E-value=42 Score=37.78 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=51.8
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHH---HHHHhc---CCCCEEEECchHHHHHHhccCccCCCCee
Q 005773 200 LILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKM---QETALR---SMPDIVVATPGRMIDHLRNSMSVDLDDLA 273 (678)
Q Consensus 200 LIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~---~~~~l~---~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~ 273 (678)
+|+++++.-+.++++.+.. .++.+..++|+.+... ....+. +..+|+|||. .+.. .+++ .+.
T Consensus 324 iIf~~s~~~ie~la~~L~~----~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e~--GlDi-~v~ 391 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEI----RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIGM--GLNL-SIR 391 (677)
T ss_dssp EEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGGS--SCCC-CBS
T ss_pred EEEEcCHHHHHHHHHHHHh----cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHHC--CcCc-Ccc
Confidence 5668888888887777776 3788999999998763 333444 4478999994 2333 5777 899
Q ss_pred EEEEeCCccc
Q 005773 274 VLILDEADRL 283 (678)
Q Consensus 274 ~lVvDEah~l 283 (678)
+||.-...+.
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9988777653
No 411
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=47.02 E-value=7.2 Score=40.22 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
.+.+++.||+|+|||+.
T Consensus 117 ~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CSEEEEESSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999975
No 412
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=46.96 E-value=13 Score=35.60 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=18.6
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhc
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLY 189 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~ 189 (678)
++++.++.|+|||.+ ++.+...+..
T Consensus 8 ~I~~~~kgGvGKTt~-a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYA-MLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHH-HHHHHHHHHH
T ss_pred EEEEECCCCCcHHHH-HHHHHHHHHH
Confidence 588999999999987 4555555544
No 413
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=46.88 E-value=7.5 Score=35.91 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=12.6
Q ss_pred EEEEcCCCchhhhh
Q 005773 165 ICGSAITGSGKTAA 178 (678)
Q Consensus 165 vl~~a~TGsGKT~~ 178 (678)
+++.|++|||||+.
T Consensus 3 I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 3 IAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 67999999999975
No 414
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=46.84 E-value=7.4 Score=37.27 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
+..+++.|++|||||++
T Consensus 16 ~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45789999999999985
No 415
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=46.69 E-value=7.2 Score=35.62 Aligned_cols=15 Identities=27% Similarity=0.180 Sum_probs=13.2
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
-+++.|++|||||++
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477999999999985
No 416
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=46.66 E-value=6.8 Score=35.61 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=17.7
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.|.-+++.|++|||||++ .-+|...
T Consensus 4 ~g~~i~l~G~~GsGKST~--~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV--SMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH--HHHHHHH
Confidence 355678999999999975 3444443
No 417
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=46.65 E-value=28 Score=41.80 Aligned_cols=65 Identities=20% Similarity=0.104 Sum_probs=50.0
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCCHHHHHHHHHHHhcCCccEEEEcc-----cccccC-CCCCccEE
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLTQAQRLEALELFRKQHVDFLIATD-----VAARGL-DIIGVQTV 442 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~Gl-Di~~v~~V 442 (678)
.+.++||.+|++..+.+....|......++.++|+++ .++..+|+|+|. .+.++- .+.++.+|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 3678999999999999999988877668999999887 246788999993 344443 35667777
Q ss_pred EE
Q 005773 443 IN 444 (678)
Q Consensus 443 I~ 444 (678)
|.
T Consensus 295 VI 296 (1108)
T 3l9o_A 295 IF 296 (1108)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 418
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=46.48 E-value=49 Score=37.34 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=52.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhc--------------------------------CCceeEEEecCCChHHHHHHh
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQF--------------------------------TDIRCCLVVGGLSTKMQETAL 243 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~--------------------------------~~~~v~~~~g~~~~~~~~~~l 243 (678)
+.++||.+|++.-+..++..+...... ....+..++|+.+...+....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 457999999999999888888764321 013478899998877665443
Q ss_pred ----cCCCCEEEECchHHHHHHhccCccCCCCeeEEEE
Q 005773 244 ----RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277 (678)
Q Consensus 244 ----~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVv 277 (678)
.+...|+|||. .+.. ++++..+.+||-
T Consensus 332 ~~f~~g~~~vlvaT~-----~l~~--Gidip~~~~VI~ 362 (715)
T 2va8_A 332 EGFRQRKIKVIVATP-----TLAA--GVNLPARTVIIG 362 (715)
T ss_dssp HHHHTTCSCEEEECG-----GGGG--SSCCCBSEEEEC
T ss_pred HHHHcCCCeEEEECh-----HHhc--ccCCCceEEEEe
Confidence 35678999993 2233 567777777654
No 419
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=46.43 E-value=6.9 Score=35.82 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
|.-+++.|++|||||+.
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45678999999999975
No 420
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=46.24 E-value=7.9 Score=35.94 Aligned_cols=15 Identities=27% Similarity=0.175 Sum_probs=13.3
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
-+++.|++|||||++
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477999999999975
No 421
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=46.11 E-value=8.3 Score=39.32 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
..+++.||+|+|||+.
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5789999999999974
No 422
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=45.80 E-value=8 Score=36.34 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=12.8
Q ss_pred EEEEcCCCchhhhh
Q 005773 165 ICGSAITGSGKTAA 178 (678)
Q Consensus 165 vl~~a~TGsGKT~~ 178 (678)
+++.|+.|||||++
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 78999999999985
No 423
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=45.65 E-value=13 Score=30.69 Aligned_cols=37 Identities=8% Similarity=0.152 Sum_probs=32.4
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~ 405 (678)
...+++|||.+-..+...+..|...|+++..|.|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4578999999988888999999999999999999864
No 424
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=45.63 E-value=6.6 Score=35.90 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=15.9
Q ss_pred EEEEcCCCchhhhhhhhchhHHHhc
Q 005773 165 ICGSAITGSGKTAAFALPTLERLLY 189 (678)
Q Consensus 165 vl~~a~TGsGKT~~~~l~~l~~l~~ 189 (678)
+.+.|++|||||+. +-+|..++.
T Consensus 5 v~IvG~SGsGKSTL--~~~L~~~~~ 27 (171)
T 2f1r_A 5 LSIVGTSDSGKTTL--ITRMMPILR 27 (171)
T ss_dssp EEEEESCHHHHHHH--HHHHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHHhh
Confidence 56889999999974 444444443
No 425
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=45.50 E-value=16 Score=38.97 Aligned_cols=55 Identities=7% Similarity=0.039 Sum_probs=39.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhcCCCCEEEECc
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALRSMPDIVVATP 254 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~~~~dIiv~Tp 254 (678)
+.++||.+|++.-|..+++.+... ++.+..++|............+..+|+|||.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESS
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECC
Confidence 357999999999999888888764 7788888886433222222234578999993
No 426
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=45.35 E-value=8.2 Score=36.49 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=13.5
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
.-+.+.|++|||||+.
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3477999999999985
No 427
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=45.17 E-value=13 Score=38.16 Aligned_cols=37 Identities=24% Similarity=0.141 Sum_probs=24.0
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcC
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~P 204 (678)
|.-+++.|++|+|||+. ++.++..+... +.+++++.-
T Consensus 61 G~iv~I~G~pGsGKTtL-al~la~~~~~~-----g~~vlyi~~ 97 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTV-ALHAVANAQAA-----GGIAAFIDA 97 (349)
T ss_dssp TSEEEEEESTTSSHHHH-HHHHHHHHHHT-----TCCEEEEES
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHHHhC-----CCeEEEEEC
Confidence 45688999999999975 45554444332 234666654
No 428
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=45.12 E-value=8.7 Score=34.52 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=18.8
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
.|.-+.+.||.|+|||+ ++-++..++
T Consensus 32 ~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 34556699999999997 455555554
No 429
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=45.03 E-value=9.5 Score=39.43 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=17.9
Q ss_pred CCEEEEcCCCchhhhhhhhchhHHHhc
Q 005773 163 RDICGSAITGSGKTAAFALPTLERLLY 189 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~~~l~~l~~l~~ 189 (678)
.-+.+.|++|+|||+. +..|..++.
T Consensus 158 ~vi~lvG~nGsGKTTl--l~~Lag~l~ 182 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTS--LGKLAHRLK 182 (359)
T ss_dssp EEEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred eEEEEEcCCCChHHHH--HHHHHhhcc
Confidence 3466999999999984 455555544
No 430
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=44.78 E-value=14 Score=30.01 Aligned_cols=37 Identities=8% Similarity=0.130 Sum_probs=32.1
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~ 405 (678)
...+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3578999999988899999999999999988988753
No 431
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=44.76 E-value=8.6 Score=34.30 Aligned_cols=15 Identities=27% Similarity=0.226 Sum_probs=13.0
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
.+++.|++|||||++
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 378999999999975
No 432
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=44.68 E-value=26 Score=35.53 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=17.2
Q ss_pred EEEEcCCCchhhhhhhhchhHHHhc
Q 005773 165 ICGSAITGSGKTAAFALPTLERLLY 189 (678)
Q Consensus 165 vl~~a~TGsGKT~~~~l~~l~~l~~ 189 (678)
+.+.|++|||||+. +-+|..++.
T Consensus 95 igI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEECCCCCCHHHH--HHHHHHHhc
Confidence 55899999999974 455666554
No 433
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=44.67 E-value=8.6 Score=35.14 Aligned_cols=14 Identities=50% Similarity=0.608 Sum_probs=12.6
Q ss_pred EEEEcCCCchhhhh
Q 005773 165 ICGSAITGSGKTAA 178 (678)
Q Consensus 165 vl~~a~TGsGKT~~ 178 (678)
+++.|+.|||||++
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67999999999975
No 434
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=44.63 E-value=5.8 Score=36.91 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
..+++.|++|||||++
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588999999999985
No 435
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=44.55 E-value=8.6 Score=35.80 Aligned_cols=14 Identities=36% Similarity=0.347 Sum_probs=12.4
Q ss_pred EEEEcCCCchhhhh
Q 005773 165 ICGSAITGSGKTAA 178 (678)
Q Consensus 165 vl~~a~TGsGKT~~ 178 (678)
+.+.|++|||||+.
T Consensus 5 i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 5 VGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56899999999985
No 436
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=44.54 E-value=15 Score=37.94 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=25.0
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcC
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTP 204 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~P 204 (678)
.|.-+++.|++|+|||.. ++.++..+... +.+|+++..
T Consensus 62 ~G~ii~I~G~pGsGKTtL-al~la~~~~~~-----g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTL-TLQVIAAAQRE-----GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHH-HHHHHHHHHHT-----TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHHC-----CCeEEEEeC
Confidence 356688999999999975 45555444332 234677665
No 437
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=44.40 E-value=7.3 Score=35.35 Aligned_cols=17 Identities=29% Similarity=0.169 Sum_probs=10.6
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
+.-+++.|+.|||||++
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHT 21 (183)
T ss_dssp CCEEEEECCC----CHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688999999999985
No 438
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=44.40 E-value=1.7e+02 Score=29.69 Aligned_cols=15 Identities=27% Similarity=0.477 Sum_probs=13.1
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
.++++|++|+|||..
T Consensus 81 ~I~i~G~~G~GKSTl 95 (355)
T 3p32_A 81 RVGITGVPGVGKSTA 95 (355)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477999999999975
No 439
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=44.39 E-value=8.5 Score=37.62 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.8
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
.-++++|++|||||+.
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 3578999999999975
No 440
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=44.38 E-value=9.4 Score=35.82 Aligned_cols=15 Identities=33% Similarity=0.346 Sum_probs=13.0
Q ss_pred EEEEcCCCchhhhhh
Q 005773 165 ICGSAITGSGKTAAF 179 (678)
Q Consensus 165 vl~~a~TGsGKT~~~ 179 (678)
.++.|+.|||||+..
T Consensus 8 ~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 8 CLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 579999999999853
No 441
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=44.26 E-value=8.9 Score=36.18 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=12.6
Q ss_pred EEEEcCCCchhhhh
Q 005773 165 ICGSAITGSGKTAA 178 (678)
Q Consensus 165 vl~~a~TGsGKT~~ 178 (678)
+++.||+||||+++
T Consensus 3 Iil~GpPGsGKgTq 16 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQ 16 (206)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999986
No 442
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=44.16 E-value=9.8 Score=37.59 Aligned_cols=40 Identities=28% Similarity=0.417 Sum_probs=24.6
Q ss_pred CCeeEEEEeCCcccccCChHHHHHHHHHHCCC-CccEEEEE
Q 005773 270 DDLAVLILDEADRLLELGFSAEIHELVRLCPK-RRQTMLFS 309 (678)
Q Consensus 270 ~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~-~~q~il~S 309 (678)
.+-++|++||.-.-++......+..++..+.. ...+++++
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviiv 213 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI 213 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEE
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence 44557888888777776666666666666543 23344444
No 443
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=44.13 E-value=8.2 Score=35.84 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.9
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
.+.+.|++|||||+.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 367999999999975
No 444
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=44.13 E-value=8.7 Score=37.07 Aligned_cols=17 Identities=24% Similarity=0.040 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
+.-+++.|+.|||||+.
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45688999999999975
No 445
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=44.08 E-value=8.6 Score=37.89 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=28.3
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHHh--cCCCEEEEcCCCchhhhh
Q 005773 124 ANSFMELNLSRPLLRACEALGYSKPTPIQ-AACIPLAL--TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 124 ~~~f~~l~l~~~l~~~l~~~g~~~~~~iQ-~~~i~~ll--~g~dvl~~a~TGsGKT~~ 178 (678)
..+|+++.-...+...+..+-.. +. ...+..+- -.+.+++.||+|+|||+.
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~----~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEF----LKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHH----HHCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHH----HHCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 35677776666666655543110 10 11121110 123589999999999974
No 446
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=43.96 E-value=12 Score=39.95 Aligned_cols=38 Identities=21% Similarity=0.030 Sum_probs=25.0
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCc
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Pt 205 (678)
|.-++++|++|+|||.. ++-+...+... +.+|+|++--
T Consensus 197 G~liiIaG~pG~GKTtl-al~ia~~~a~~-----g~~vl~fSlE 234 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAF-ALKQAKNMSDN-----DDVVNLHSLE 234 (444)
T ss_dssp SCEEEEEECSSSSHHHH-HHHHHHHHHHT-----TCEEEEECSS
T ss_pred CcEEEEEeCCCCChHHH-HHHHHHHHHHc-----CCEEEEEECC
Confidence 34577999999999965 45554444332 3457877643
No 447
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=43.88 E-value=9.9 Score=37.38 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=18.0
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.|.-+.+.||.|||||+. +-++..+
T Consensus 49 ~Gei~~liG~NGsGKSTL--lk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF--LRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHH--HHHHHcC
Confidence 356677999999999973 4445443
No 448
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=43.75 E-value=8.6 Score=35.83 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.+.-+++.|+.|||||++
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 356688999999999985
No 449
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=43.29 E-value=17 Score=29.04 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=30.6
Q ss_pred ceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCC
Q 005773 371 SKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405 (678)
Q Consensus 371 ~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~ 405 (678)
.+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988888899999999998888888864
No 450
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=43.17 E-value=9.5 Score=35.69 Aligned_cols=17 Identities=29% Similarity=0.057 Sum_probs=14.3
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
|.-+++.|++|+|||+.
T Consensus 20 G~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTL 36 (220)
T ss_dssp TSEEEEECSTTSSHHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 45677999999999975
No 451
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=43.13 E-value=14 Score=38.19 Aligned_cols=39 Identities=21% Similarity=0.114 Sum_probs=25.7
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcH
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTR 206 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr 206 (678)
|.-+++.||+|+|||+. ++.++..+... +.+|+++.+-.
T Consensus 61 G~i~~I~GppGsGKSTL-al~la~~~~~~-----gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTL-ALHAIAEAQKM-----GGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHHHHHT-----TCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHhc-----CCeEEEEeccc
Confidence 45677999999999975 55555544332 33577776543
No 452
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=42.75 E-value=9.6 Score=34.95 Aligned_cols=14 Identities=43% Similarity=0.560 Sum_probs=12.5
Q ss_pred EEEEcCCCchhhhh
Q 005773 165 ICGSAITGSGKTAA 178 (678)
Q Consensus 165 vl~~a~TGsGKT~~ 178 (678)
+++.|+.|||||++
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999985
No 453
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=42.71 E-value=9 Score=35.74 Aligned_cols=17 Identities=41% Similarity=0.237 Sum_probs=14.0
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
+.-+.+.|++|||||+.
T Consensus 21 ~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44577999999999974
No 454
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=42.55 E-value=9.4 Score=35.61 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.+.-+++.|+.|||||++
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456788999999999985
No 455
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=42.40 E-value=9.1 Score=36.00 Aligned_cols=15 Identities=20% Similarity=0.065 Sum_probs=13.1
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
.+++.|++|||||++
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999985
No 456
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=42.39 E-value=11 Score=36.38 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=15.5
Q ss_pred EEEEcCCCchhhhhhhhchhHHH
Q 005773 165 ICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 165 vl~~a~TGsGKT~~~~l~~l~~l 187 (678)
+.+.||+|||||+ ++-++..+
T Consensus 27 ~~liG~nGsGKST--Ll~~l~Gl 47 (240)
T 2onk_A 27 CVLLGPTGAGKSV--FLELIAGI 47 (240)
T ss_dssp EEEECCTTSSHHH--HHHHHHTS
T ss_pred EEEECCCCCCHHH--HHHHHhCC
Confidence 5589999999997 35555444
No 457
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=42.30 E-value=13 Score=42.22 Aligned_cols=26 Identities=38% Similarity=0.636 Sum_probs=20.7
Q ss_pred HHHHHHhcCCCEE--EEcCCCchhhhhh
Q 005773 154 ACIPLALTGRDIC--GSAITGSGKTAAF 179 (678)
Q Consensus 154 ~~i~~ll~g~dvl--~~a~TGsGKT~~~ 179 (678)
..+..++.|.|++ ..|.||||||.+.
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 3677888998744 6799999999873
No 458
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=42.21 E-value=13 Score=39.88 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
..++++.||+|+|||..
T Consensus 201 ~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SCEEEEESCTTTTTHHH
T ss_pred CCCeEEECCCCCCHHHH
Confidence 46899999999999975
No 459
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=42.14 E-value=12 Score=34.25 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=16.2
Q ss_pred CEEEEcCCCchhhhhhhhchhHHH
Q 005773 164 DICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
-++++|+.|||||+. +-.++..+
T Consensus 8 ~i~i~G~sGsGKTTl-~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL-LKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHHH
T ss_pred EEEEEeCCCCCHHHH-HHHHHHhc
Confidence 467999999999974 44444443
No 460
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=42.10 E-value=11 Score=38.10 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=17.3
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhc
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLY 189 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~ 189 (678)
-+.+.|++|||||+. +-+|..++.
T Consensus 92 ivgI~G~sGsGKSTL--~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTT--ARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHH--HHHHHHHHH
T ss_pred EEEEECCCCchHHHH--HHHHHhhcc
Confidence 455999999999974 455555543
No 461
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=42.03 E-value=8.9 Score=39.78 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=0.0
Q ss_pred EEEEcCCCchhhhhh
Q 005773 165 ICGSAITGSGKTAAF 179 (678)
Q Consensus 165 vl~~a~TGsGKT~~~ 179 (678)
.++.|+||+|||..+
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 462
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=41.66 E-value=10 Score=36.14 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=14.1
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
.+-+++.||+||||+++
T Consensus 29 ~kiI~llGpPGsGKgTq 45 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQ 45 (217)
T ss_dssp CEEEEEECCTTCCHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34577899999999986
No 463
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=41.28 E-value=16 Score=44.75 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQE 240 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~ 240 (678)
.|+-+.+.||+|||||+ ++-+|..++.-..+ =|.+.-..+..--.+.++.-..+..-...+..|. -..
T Consensus 443 ~G~~vaivG~sGsGKST--ll~ll~~~~~~~~G------~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~T----I~e 510 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKST--IISLLLRYYDVLKG------KITIDGVDVRDINLEFLRKNVAVVSQEPALFNCT----IEE 510 (1321)
T ss_dssp TTCEEEEEECSSSCHHH--HHHHHTTSSCCSEE------EEEETTEETTTSCHHHHHHHEEEECSSCCCCSEE----HHH
T ss_pred CCcEEEEEecCCCcHHH--HHHHhccccccccC------cccCCCccchhccHHHHhhcccccCCcceeeCCc----hhH
Q ss_pred HHhcCCCCEEEECchHHHHHHhccCccC----------------------------------CCCeeEEEEeCCcccccC
Q 005773 241 TALRSMPDIVVATPGRMIDHLRNSMSVD----------------------------------LDDLAVLILDEADRLLEL 286 (678)
Q Consensus 241 ~~l~~~~dIiv~Tp~~L~~~l~~~~~~~----------------------------------l~~i~~lVvDEah~ll~~ 286 (678)
....+.++ +|.+.+...+.....-. +++-.++|+||+=.-++.
T Consensus 511 NI~~g~~~---~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 511 NISLGKEG---ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDA 587 (1321)
T ss_dssp HHHTTCTT---CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCT
T ss_pred HHhhhccc---chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCH
Q ss_pred ChHHHHHHHHHHCCCCccEEEEE
Q 005773 287 GFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 287 gf~~~i~~i~~~~~~~~q~il~S 309 (678)
.-...+.+.+..+.+++-+|+.+
T Consensus 588 ~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 588 ESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCEEEEEc
No 464
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=41.23 E-value=10 Score=36.00 Aligned_cols=14 Identities=36% Similarity=0.275 Sum_probs=12.7
Q ss_pred EEEEcCCCchhhhh
Q 005773 165 ICGSAITGSGKTAA 178 (678)
Q Consensus 165 vl~~a~TGsGKT~~ 178 (678)
+++.|++|||||++
T Consensus 3 I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999985
No 465
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=41.09 E-value=17 Score=37.68 Aligned_cols=38 Identities=18% Similarity=0.093 Sum_probs=25.1
Q ss_pred CCCEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCc
Q 005773 162 GRDICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPT 205 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Pt 205 (678)
|.-+++.|++|+|||.. ++.++..+... +.+|+++..-
T Consensus 74 G~li~I~G~pGsGKTtl-al~la~~~~~~-----g~~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTL-ALAIVAQAQKA-----GGTCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHH-HHHHHHHHHHT-----TCCEEEEESS
T ss_pred CcEEEEEcCCCCChHHH-HHHHHHHHHHC-----CCeEEEEECC
Confidence 45678999999999965 55555554432 2346666654
No 466
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=41.09 E-value=9.8 Score=42.31 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=14.0
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 467
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=40.90 E-value=8.6 Score=37.38 Aligned_cols=16 Identities=31% Similarity=0.329 Sum_probs=13.6
Q ss_pred CCEEEEcCCCchhhhh
Q 005773 163 RDICGSAITGSGKTAA 178 (678)
Q Consensus 163 ~dvl~~a~TGsGKT~~ 178 (678)
.-++++|++|||||+.
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578999999999975
No 468
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=40.68 E-value=24 Score=28.92 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=31.5
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCc-eeeccCCCC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLAALK-AAELHGNLT 405 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~~~~-~~~lhg~l~ 405 (678)
...+++|||.+-..+...+..|...|+. +..|.|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3568999999988899999999999984 888888864
No 469
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=40.67 E-value=20 Score=35.57 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.1
Q ss_pred cCCCEEEEcCCCchhhhh
Q 005773 161 TGRDICGSAITGSGKTAA 178 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~ 178 (678)
.|.-+++.|++|+|||+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTF 51 (296)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 456678999999999975
No 470
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=40.48 E-value=10 Score=35.79 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
+..+++.|++|||||++
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34688999999999985
No 471
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=40.34 E-value=14 Score=30.19 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=31.7
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhcCCceeeccCCCC
Q 005773 369 FTSKVIIFSGTKQAAHRLKILFGLAALKAAELHGNLT 405 (678)
Q Consensus 369 ~~~~vLVF~~s~~~~~~l~~~L~~~~~~~~~lhg~l~ 405 (678)
...+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3578999999988888899999999999999988753
No 472
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=40.25 E-value=12 Score=39.94 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
.+++++.||+|+|||+.
T Consensus 50 ~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEEcCCCCCHHHH
Confidence 46899999999999974
No 473
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=40.20 E-value=10 Score=34.97 Aligned_cols=15 Identities=33% Similarity=0.293 Sum_probs=13.0
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
-+.+.|++|||||++
T Consensus 10 ~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 10 IIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467999999999985
No 474
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=40.18 E-value=1.5e+02 Score=30.62 Aligned_cols=92 Identities=9% Similarity=0.057 Sum_probs=51.9
Q ss_pred HHHHHHHhcCCCEEEEcCCCc-hhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEe
Q 005773 153 AACIPLALTGRDICGSAITGS-GKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVV 231 (678)
Q Consensus 153 ~~~i~~ll~g~dvl~~a~TGs-GKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~ 231 (678)
...+...+.++.++|.|.||+ |..++- .|.... ...++++.-...-..++...+.....+.+..+..+.
T Consensus 26 ~~~~~~~~~~k~vLVTGatG~IG~~l~~------~L~~~g----~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~v~~~~ 95 (399)
T 3nzo_A 26 EKELQSVVSQSRFLVLGGAGSIGQAVTK------EIFKRN----PQKLHVVDISENNMVELVRDIRSSFGYINGDFQTFA 95 (399)
T ss_dssp HHHHHHHHHTCEEEEETTTSHHHHHHHH------HHHTTC----CSEEEEECSCHHHHHHHHHHHHHHTCCCSSEEEEEC
T ss_pred HHHHHHHhCCCEEEEEcCChHHHHHHHH------HHHHCC----CCEEEEEECCcchHHHHHHHHHHhcCCCCCcEEEEE
Confidence 344556678999999999996 776542 222221 124566655544444454555443333345666677
Q ss_pred cCCChHHHHHHh--cCCCCEEEECc
Q 005773 232 GGLSTKMQETAL--RSMPDIVVATP 254 (678)
Q Consensus 232 g~~~~~~~~~~l--~~~~dIiv~Tp 254 (678)
+..........+ ..++|+||-..
T Consensus 96 ~Dl~d~~~~~~~~~~~~~D~Vih~A 120 (399)
T 3nzo_A 96 LDIGSIEYDAFIKADGQYDYVLNLS 120 (399)
T ss_dssp CCTTSHHHHHHHHHCCCCSEEEECC
T ss_pred EeCCCHHHHHHHHHhCCCCEEEECC
Confidence 766554433332 25678887653
No 475
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=39.99 E-value=13 Score=34.80 Aligned_cols=24 Identities=29% Similarity=0.196 Sum_probs=16.7
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhc
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLY 189 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~ 189 (678)
-.++.|++|+|||.. +-++..++.
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhc
Confidence 456899999999975 444444443
No 476
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=39.98 E-value=13 Score=35.24 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=25.0
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHCCCCccEEEEE
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFS 309 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~~~~~q~il~S 309 (678)
+.+-+++++||--.-++......+..++..+.....+++++
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiiv 189 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 189 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEE
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34556888888887777766666666655543222344444
No 477
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=39.91 E-value=13 Score=37.21 Aligned_cols=14 Identities=43% Similarity=0.394 Sum_probs=12.1
Q ss_pred EEEEcCCCchhhhh
Q 005773 165 ICGSAITGSGKTAA 178 (678)
Q Consensus 165 vl~~a~TGsGKT~~ 178 (678)
+.++|++|||||+.
T Consensus 34 i~I~G~sGsGKSTl 47 (290)
T 1odf_A 34 IFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45899999999974
No 478
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=39.67 E-value=44 Score=37.68 Aligned_cols=75 Identities=24% Similarity=0.243 Sum_probs=50.9
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhc--------------------------CCceeEEEecCCChHHHHHHh----cC
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQF--------------------------TDIRCCLVVGGLSTKMQETAL----RS 245 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~--------------------------~~~~v~~~~g~~~~~~~~~~l----~~ 245 (678)
+.++||.+|++.-+..++..+...... .+..+..++|+.+...+.... .+
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 456999999999999888877754211 013467889998876665433 35
Q ss_pred CCCEEEECchHHHHHHhccCccCCCCeeEEEE
Q 005773 246 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLIL 277 (678)
Q Consensus 246 ~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVv 277 (678)
...|+|||. .+.. ++++..+.+||-
T Consensus 322 ~~~vlvaT~-----~l~~--Gidip~~~~VI~ 346 (702)
T 2p6r_A 322 NIKVVVATP-----TLAA--GVNLPARRVIVR 346 (702)
T ss_dssp SCCEEEECS-----TTTS--SSCCCBSEEEEC
T ss_pred CCeEEEECc-----HHhc--cCCCCceEEEEc
Confidence 678999994 1222 567777776553
No 479
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=39.64 E-value=12 Score=36.14 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=17.9
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.|.-+.+.||+|||||+. +-++..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTL--l~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL--LSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTC
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 466677999999999973 4444433
No 480
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=39.38 E-value=11 Score=36.42 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
+..+++.|+.|||||++
T Consensus 29 ~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34688999999999985
No 481
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=38.91 E-value=12 Score=35.24 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=13.1
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
-+++.|++|||||++
T Consensus 6 ~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 6 IVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467999999999985
No 482
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=38.76 E-value=12 Score=36.41 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchhhhh
Q 005773 162 GRDICGSAITGSGKTAA 178 (678)
Q Consensus 162 g~dvl~~a~TGsGKT~~ 178 (678)
|.-+.+.|++|||||+.
T Consensus 27 g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 27 APVITVDGPSGAGKGTL 43 (252)
T ss_dssp SCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45677999999999985
No 483
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=38.58 E-value=1.5e+02 Score=28.78 Aligned_cols=94 Identities=19% Similarity=0.300 Sum_probs=59.7
Q ss_pred CCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh---cC-
Q 005773 170 ITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL---RS- 245 (678)
Q Consensus 170 ~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l---~~- 245 (678)
...+||..+ +.-++..+... +.++||.+.++..+..+...+... .++.+..+.|+.+.......+ ..
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~~-----~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~ 162 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALDE-----GDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQNN 162 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHHHC
T ss_pred cccCHHHHH-HHHHHHHHHhC-----CCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhcCC
Confidence 356888865 56666665432 346899999998888777776652 267788889988765554432 22
Q ss_pred -CCC-EEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 005773 246 -MPD-IVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (678)
Q Consensus 246 -~~d-Iiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (678)
... ++++|- . ....+++.....||+=+
T Consensus 163 ~~~~v~L~st~-~------~g~Glnl~~a~~VI~~d 191 (271)
T 1z5z_A 163 PSVKFIVLSVK-A------GGFGINLTSANRVIHFD 191 (271)
T ss_dssp TTCCEEEEECC-T------TCCCCCCTTCSEEEECS
T ss_pred CCCCEEEEehh-h------hcCCcCcccCCEEEEEC
Confidence 345 455552 2 12356777777776533
No 484
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=38.37 E-value=60 Score=36.68 Aligned_cols=76 Identities=21% Similarity=0.228 Sum_probs=50.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHhhc-----------------------------CCceeEEEecCCChHHHHHHh---
Q 005773 196 AIRVLILTPTRELAVQVHSMIEKIAQF-----------------------------TDIRCCLVVGGLSTKMQETAL--- 243 (678)
Q Consensus 196 ~~~vLIl~Ptr~La~Q~~~~~~~l~~~-----------------------------~~~~v~~~~g~~~~~~~~~~l--- 243 (678)
+.++||.+|++.-|..++..+...... ....+..++|+.+...+....
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 356999999999999888887764221 112478889998877665332
Q ss_pred -cCCCCEEEECchHHHHHHhccCccCCCCeeEEEEeC
Q 005773 244 -RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDE 279 (678)
Q Consensus 244 -~~~~dIiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDE 279 (678)
.+..+|+|||. .+.. .+++..+.+ ||+.
T Consensus 317 ~~g~~~vlvaT~-----~l~~--Gvdip~~~~-VI~~ 345 (720)
T 2zj8_A 317 RKGIIKAVVATP-----TLSA--GINTPAFRV-IIRD 345 (720)
T ss_dssp HTTSSCEEEECS-----TTGG--GCCCCBSEE-EECC
T ss_pred HCCCCeEEEECc-----Hhhc--cCCCCceEE-EEcC
Confidence 34578999994 1222 566777766 4543
No 485
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=38.12 E-value=12 Score=34.90 Aligned_cols=15 Identities=27% Similarity=0.260 Sum_probs=12.8
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
-+.+.|++|||||+.
T Consensus 24 ~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTL 38 (201)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466999999999974
No 486
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=38.01 E-value=13 Score=35.62 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=18.1
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.|.-+.+.||+|||||+. +-++..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTL--l~~l~Gl 57 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL--LMMIMGE 57 (229)
T ss_dssp TTCEEEEECCTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhCC
Confidence 466777999999999973 4444433
No 487
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=37.99 E-value=14 Score=38.07 Aligned_cols=24 Identities=25% Similarity=0.030 Sum_probs=17.4
Q ss_pred HHHHHhc-----CCCEEEEcCCCchhhhh
Q 005773 155 CIPLALT-----GRDICGSAITGSGKTAA 178 (678)
Q Consensus 155 ~i~~ll~-----g~dvl~~a~TGsGKT~~ 178 (678)
.+..++. |.-+.+.|++|||||+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL 147 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQL 147 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence 3445554 34577999999999975
No 488
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=37.78 E-value=28 Score=29.45 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=30.5
Q ss_pred ceEEEEe-ccHHHHHHHHHHHhhcCCceeeccCCCCH
Q 005773 371 SKVIIFS-GTKQAAHRLKILFGLAALKAAELHGNLTQ 406 (678)
Q Consensus 371 ~~vLVF~-~s~~~~~~l~~~L~~~~~~~~~lhg~l~~ 406 (678)
.+++||| .+-..+..++..|...|+++..|.|++..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 7899999 57677778899999999999999998753
No 489
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=37.77 E-value=13 Score=36.88 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=18.0
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.|.-+.+.||+|||||+. +-++..+
T Consensus 33 ~Ge~~~iiGpnGsGKSTL--l~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL--FQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHcC
Confidence 356677999999999973 4455443
No 490
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=37.51 E-value=20 Score=36.41 Aligned_cols=91 Identities=11% Similarity=0.164 Sum_probs=49.8
Q ss_pred CEEEEcCCCchhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHh
Q 005773 164 DICGSAITGSGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETAL 243 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l 243 (678)
-+++.||+|+|||.. ++.++..+... ..+.+++++..-..+. |. .++.+ ++..
T Consensus 30 iteI~G~pGsGKTtL-~Lq~~~~~~~~---g~g~~vlyId~E~s~~-~~--ra~~l----Gvd~---------------- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNF-GLTMVSSYMRQ---YPDAVCLFYDSEFGIT-PA--YLRSM----GVDP---------------- 82 (333)
T ss_dssp EEEEEESSSSSHHHH-HHHHHHHHHHH---CTTCEEEEEESSCCCC-HH--HHHHT----TCCG----------------
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHHhc---CCCceEEEEeccchhh-HH--HHHHh----CCCH----------------
Confidence 467999999999975 55555544432 1245688887655543 22 23333 2211
Q ss_pred cCCCCEEEECchHH----HHHHhccCccCCCCeeEEEEeCCcccc
Q 005773 244 RSMPDIVVATPGRM----IDHLRNSMSVDLDDLAVLILDEADRLL 284 (678)
Q Consensus 244 ~~~~dIiv~Tp~~L----~~~l~~~~~~~l~~i~~lVvDEah~ll 284 (678)
.+++++.|..+ +.++.....+.-..+++||||=+..+.
T Consensus 83 ---d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 ---ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ---GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred ---HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 12445544333 222211101223468899999999875
No 491
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=37.36 E-value=13 Score=36.33 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=18.5
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.|.-+.+.||+|||||+. +-++..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTL--l~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI--AKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcc
Confidence 466788999999999974 4455444
No 492
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=36.69 E-value=14 Score=36.10 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=18.1
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.|.-+.+.||+|||||+. +-++..+
T Consensus 32 ~Ge~~~liG~nGsGKSTL--lk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTL--INVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhCC
Confidence 466677999999999973 4444433
No 493
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=36.65 E-value=14 Score=34.38 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=12.8
Q ss_pred CEEEEcCCCchhhhh
Q 005773 164 DICGSAITGSGKTAA 178 (678)
Q Consensus 164 dvl~~a~TGsGKT~~ 178 (678)
.+.+.|.+|||||++
T Consensus 14 iIgltG~~GSGKSTv 28 (192)
T 2grj_A 14 VIGVTGKIGTGKSTV 28 (192)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466899999999985
No 494
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=36.50 E-value=24 Score=41.84 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=40.8
Q ss_pred cccCCcccCC-C-CHHHHHHHHHcCCC----CCcHHHHHHHHHHhc---CCCEEEEcCCCchhhhhhhhchhHHHh
Q 005773 122 FHANSFMELN-L-SRPLLRACEALGYS----KPTPIQAACIPLALT---GRDICGSAITGSGKTAAFALPTLERLL 188 (678)
Q Consensus 122 ~~~~~f~~l~-l-~~~l~~~l~~~g~~----~~~~iQ~~~i~~ll~---g~dvl~~a~TGsGKT~~~~l~~l~~l~ 188 (678)
..+++|..++ | ++............ +...+=..|...++. .+.+|+.|.+|+|||.+ .-.+++.|.
T Consensus 95 IaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTes-tK~im~yLa 169 (1052)
T 4anj_A 95 IAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTEN-TKFVLRYLT 169 (1052)
T ss_dssp EEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHH-HHHHHHHHH
T ss_pred EEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHH-HHHHHHHHH
Confidence 3456777774 4 66666665543332 234445556655554 35799999999999976 344555543
No 495
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=36.32 E-value=16 Score=35.19 Aligned_cols=22 Identities=32% Similarity=0.205 Sum_probs=15.6
Q ss_pred CEEEEcCCCchhhhhhhhchhHHH
Q 005773 164 DICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 164 dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
-+.+.||.|||||+. +-+|..+
T Consensus 27 iigI~G~~GsGKSTl--~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTV--CEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHH--HHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHH
Confidence 455999999999975 3444443
No 496
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=36.27 E-value=14 Score=35.58 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=18.0
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.|.-+.+.||+|||||+. +-++..+
T Consensus 31 ~Ge~~~l~G~nGsGKSTL--l~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT--LSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhCC
Confidence 356677999999999973 4444443
No 497
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=36.02 E-value=1.9e+02 Score=33.02 Aligned_cols=104 Identities=17% Similarity=0.235 Sum_probs=61.8
Q ss_pred chhhhhhhhchhHHHhcCCCCCCCeEEEEEcCcHHHHHHHHHHHHHHhhcCCceeEEEecCCChHHHHHHhc---C-CCC
Q 005773 173 SGKTAAFALPTLERLLYRPKRIPAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKMQETALR---S-MPD 248 (678)
Q Consensus 173 sGKT~~~~l~~l~~l~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~l~~~~~~~v~~~~g~~~~~~~~~~l~---~-~~d 248 (678)
|||-.. +.-++..+.. .+.++||.+..+..+..+...+.. .++.+..+.|+.+.......+. . ...
T Consensus 555 s~K~~~-L~~lL~~~~~-----~g~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~ 624 (800)
T 3mwy_W 555 SGKMVL-LDQLLTRLKK-----DGHRVLIFSQMVRMLDILGDYLSI----KGINFQRLDGTVPSAQRRISIDHFNSPDSN 624 (800)
T ss_dssp CHHHHH-HHHHHHHHTT-----TTCCEEEEESCHHHHHHHHHHHHH----HTCCCEEESTTSCHHHHHHHHHTTSSTTCS
T ss_pred ChHHHH-HHHHHHHHhh-----CCCeEEEEechHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhCCCCC
Confidence 555433 4444444422 245799999998877666655543 4788899999988777665542 2 122
Q ss_pred ---EEEECchHHHHHHhccCccCCCCeeEEEEeCCcccccCChHHHHHHHHH
Q 005773 249 ---IVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVR 297 (678)
Q Consensus 249 ---Iiv~Tp~~L~~~l~~~~~~~l~~i~~lVvDEah~ll~~gf~~~i~~i~~ 297 (678)
++++| .. . +.++++.....||+=+.+ |.....++.+-+
T Consensus 625 ~~v~LlSt-~a----g--g~GlNL~~a~~VI~~D~~----wnp~~~~Qa~gR 665 (800)
T 3mwy_W 625 DFVFLLST-RA----G--GLGINLMTADTVVIFDSD----WNPQADLQAMAR 665 (800)
T ss_dssp CCCEEEEH-HH----H--TTTCCCTTCCEEEESSCC----SCSHHHHHHHTT
T ss_pred ceEEEEec-cc----c--cCCCCccccceEEEecCC----CChhhHHHHHHH
Confidence 45554 22 2 236778778877764433 555555554433
No 498
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=35.92 E-value=16 Score=37.61 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=20.9
Q ss_pred CCCeeEEEEeCCcccccCChHHHHHHHHHHC
Q 005773 269 LDDLAVLILDEADRLLELGFSAEIHELVRLC 299 (678)
Q Consensus 269 l~~i~~lVvDEah~ll~~gf~~~i~~i~~~~ 299 (678)
+.+-+++++||-=.-++......+..++..+
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 179 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHL 179 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 3455689999988777766666666555544
No 499
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=35.91 E-value=14 Score=35.33 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=17.7
Q ss_pred cCCCEEEEcCCCchhhhhhhhchhHHH
Q 005773 161 TGRDICGSAITGSGKTAAFALPTLERL 187 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~~l~~l~~l 187 (678)
.|.-+.+.||.|||||+. +-++..+
T Consensus 29 ~Ge~~~iiG~nGsGKSTL--l~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL--LYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHH--HHHHTTS
T ss_pred CCCEEEEECCCCCCHHHH--HHHHhcC
Confidence 355677999999999973 4444433
No 500
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=35.86 E-value=14 Score=36.26 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=0.0
Q ss_pred cCCCEEEEcCCCchhhhhh
Q 005773 161 TGRDICGSAITGSGKTAAF 179 (678)
Q Consensus 161 ~g~dvl~~a~TGsGKT~~~ 179 (678)
.|.-+.+.||+|||||+..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp TTCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Done!