Query 005776
Match_columns 677
No_of_seqs 234 out of 975
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 13:36:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5594 Uncharacterized integr 100.0 4E-107 9E-112 889.6 48.2 607 3-633 20-684 (827)
2 KOG1134 Uncharacterized conser 100.0 1E-103 3E-108 893.9 54.0 597 1-615 1-600 (728)
3 PF02714 DUF221: Domain of unk 100.0 2E-59 4.4E-64 499.4 33.8 305 323-628 1-312 (325)
4 PF13967 RSN1_TM: Late exocyto 100.0 2.1E-34 4.6E-39 273.2 13.4 156 6-180 1-157 (157)
5 PF04547 Anoctamin: Calcium-ac 99.0 9.1E-08 2E-12 106.8 26.1 193 422-627 162-383 (452)
6 PF14703 DUF4463: Domain of un 98.9 1.8E-09 3.9E-14 91.4 5.8 65 238-302 1-85 (85)
7 KOG2513 Protein required for m 97.6 0.013 2.9E-07 65.0 23.7 231 365-624 260-539 (647)
8 TIGR01659 sex-lethal sex-letha 96.6 0.0066 1.4E-07 65.1 8.8 42 197-243 103-144 (346)
9 KOG0144 RNA-binding protein CU 95.7 0.051 1.1E-06 57.7 9.1 133 200-343 33-188 (510)
10 PLN03134 glycine-rich RNA-bind 95.2 0.17 3.6E-06 47.2 10.1 36 200-240 33-68 (144)
11 TIGR01628 PABP-1234 polyadenyl 95.0 0.18 3.9E-06 58.2 11.7 165 203-378 2-200 (562)
12 PLN03120 nucleic acid binding 94.9 0.15 3.3E-06 51.6 9.4 34 201-239 4-37 (260)
13 TIGR01661 ELAV_HUD_SF ELAV/HuD 94.8 0.21 4.5E-06 53.8 11.1 101 201-378 3-111 (352)
14 TIGR01648 hnRNP-R-Q heterogene 94.3 0.15 3.3E-06 58.1 8.7 39 200-243 57-95 (578)
15 PLN03121 nucleic acid binding 94.3 0.28 6.1E-06 49.0 9.5 36 199-239 3-38 (243)
16 TIGR01661 ELAV_HUD_SF ELAV/HuD 93.7 0.38 8.3E-06 51.7 10.1 36 201-241 269-304 (352)
17 PF14259 RRM_6: RNA recognitio 93.3 0.38 8.2E-06 38.3 7.1 23 319-341 38-60 (70)
18 KOG0122 Translation initiation 91.5 0.76 1.6E-05 45.6 7.8 34 320-353 231-266 (270)
19 TIGR01628 PABP-1234 polyadenyl 91.5 0.72 1.6E-05 53.2 9.2 39 199-242 176-214 (562)
20 TIGR01648 hnRNP-R-Q heterogene 91.4 0.87 1.9E-05 52.0 9.4 36 321-356 270-307 (578)
21 KOG0149 Predicted RNA-binding 90.8 0.63 1.4E-05 46.0 6.5 35 202-241 13-47 (247)
22 KOG0125 Ataxin 2-binding prote 90.8 1.1 2.4E-05 46.3 8.5 48 321-368 137-196 (376)
23 TIGR01645 half-pint poly-U bin 88.9 1.4 3.1E-05 50.5 8.5 45 319-363 245-291 (612)
24 TIGR01622 SF-CC1 splicing fact 88.5 2.4 5.1E-05 47.5 9.9 37 200-241 88-124 (457)
25 KOG2514 Uncharacterized conser 87.4 4.1 9E-05 47.5 10.8 50 429-478 439-488 (861)
26 KOG0117 Heterogeneous nuclear 86.7 1.5 3.1E-05 47.3 6.3 36 318-353 206-245 (506)
27 KOG0127 Nucleolar protein fibr 86.1 2.8 6.1E-05 46.3 8.2 33 202-239 293-325 (678)
28 KOG0145 RNA-binding protein EL 85.2 7.8 0.00017 38.9 10.0 146 202-356 42-209 (360)
29 TIGR01649 hnRNP-L_PTB hnRNP-L/ 84.8 8.4 0.00018 43.5 11.8 35 200-239 274-309 (481)
30 PF13893 RRM_5: RNA recognitio 84.6 1.5 3.2E-05 33.3 4.0 24 320-343 21-44 (56)
31 TIGR01642 U2AF_lg U2 snRNP aux 83.3 6.3 0.00014 44.7 10.1 37 201-242 295-331 (509)
32 KOG0148 Apoptosis-promoting RN 83.0 2 4.3E-05 43.4 4.9 117 200-340 5-124 (321)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 81.8 9.7 0.00021 43.0 10.8 31 201-236 2-32 (481)
34 KOG4211 Splicing factor hnRNP- 78.0 4.9 0.00011 43.9 6.3 23 319-341 144-166 (510)
35 PF00076 RRM_1: RNA recognitio 73.3 5.3 0.00011 31.1 4.0 32 204-240 1-32 (70)
36 KOG4206 Spliceosomal protein s 73.2 5 0.00011 39.6 4.5 44 319-362 51-96 (221)
37 TIGR01642 U2AF_lg U2 snRNP aux 72.0 9.1 0.0002 43.4 7.1 35 319-353 336-372 (509)
38 TIGR01659 sex-lethal sex-letha 70.7 9.5 0.00021 41.0 6.4 59 319-377 148-214 (346)
39 smart00361 RRM_1 RNA recogniti 70.2 4.8 0.0001 32.2 3.1 25 319-343 36-60 (70)
40 KOG0109 RNA-binding protein LA 68.7 6.2 0.00013 40.4 4.1 35 204-243 5-39 (346)
41 KOG0107 Alternative splicing f 67.8 5.1 0.00011 38.0 3.0 34 319-352 46-81 (195)
42 PF07810 TMC: TMC domain; Int 67.5 55 0.0012 29.0 9.3 55 559-616 47-104 (111)
43 KOG0108 mRNA cleavage and poly 66.7 16 0.00036 40.3 7.2 35 202-241 19-53 (435)
44 PF04059 RRM_2: RNA recognitio 66.1 9.5 0.00021 32.9 4.2 23 320-342 45-67 (97)
45 PF00076 RRM_1: RNA recognitio 65.4 6.2 0.00013 30.7 2.9 24 319-342 38-61 (70)
46 smart00362 RRM_2 RNA recogniti 64.5 9.4 0.0002 29.2 3.8 22 320-341 39-60 (72)
47 PF07292 NID: Nmi/IFP 35 domai 58.9 2.6 5.7E-05 35.5 -0.4 31 198-228 49-80 (88)
48 KOG0117 Heterogeneous nuclear 58.4 16 0.00034 39.7 5.0 84 293-376 95-184 (506)
49 KOG0146 RNA-binding protein ET 56.3 19 0.00041 36.4 4.8 49 319-379 59-112 (371)
50 smart00360 RRM RNA recognition 56.2 14 0.00029 28.1 3.3 23 319-341 37-59 (71)
51 cd00590 RRM RRM (RNA recogniti 55.9 17 0.00038 27.8 4.0 24 320-343 40-63 (74)
52 smart00362 RRM_2 RNA recogniti 54.6 15 0.00033 28.0 3.3 23 203-228 1-23 (72)
53 cd00590 RRM RRM (RNA recogniti 52.7 23 0.00049 27.1 4.1 31 203-238 1-31 (74)
54 KOG4205 RNA-binding protein mu 48.8 6.7 0.00015 41.3 0.5 152 200-360 5-179 (311)
55 KOG1457 RNA binding protein (c 43.2 37 0.0008 33.6 4.5 24 319-342 76-99 (284)
56 KOG4208 Nucleolar RNA-binding 40.1 26 0.00057 34.2 3.0 23 319-341 91-113 (214)
57 PF01102 Glycophorin_A: Glycop 40.1 24 0.00052 31.8 2.6 19 13-31 74-92 (122)
58 KOG1365 RNA-binding protein Fu 39.3 1.9E+02 0.0042 31.1 9.2 25 318-342 322-346 (508)
59 TIGR01622 SF-CC1 splicing fact 38.7 70 0.0015 35.6 6.7 37 319-355 409-447 (457)
60 PF14257 DUF4349: Domain of un 35.9 3.9E+02 0.0085 27.2 11.2 26 287-312 160-185 (262)
61 KOG0114 Predicted RNA-binding 33.3 34 0.00073 29.8 2.2 24 319-342 56-79 (124)
62 PF11608 Limkain-b1: Limkain b 31.0 86 0.0019 26.4 4.2 40 320-359 39-80 (90)
63 COG3833 MalG ABC-type maltose 30.5 6.3E+02 0.014 26.2 14.6 29 369-397 7-35 (282)
64 KOG0144 RNA-binding protein CU 29.6 68 0.0015 34.9 4.2 25 319-343 75-99 (510)
65 KOG0131 Splicing factor 3b, su 27.6 5.8E+02 0.013 24.8 9.7 147 197-353 5-174 (203)
66 COG0724 RNA-binding proteins ( 27.5 76 0.0016 31.5 4.3 36 201-241 115-150 (306)
67 PF04059 RRM_2: RNA recognitio 27.1 62 0.0013 27.9 2.9 23 202-224 2-25 (97)
68 PF02714 DUF221: Domain of unk 27.0 7.5E+02 0.016 25.9 21.0 40 567-607 242-281 (325)
69 PF11823 DUF3343: Protein of u 26.3 1E+02 0.0022 24.8 3.9 36 321-359 2-37 (73)
70 KOG0226 RNA-binding proteins [ 26.2 99 0.0022 31.4 4.5 23 319-341 231-253 (290)
71 KOG0105 Alternative splicing f 24.5 38 0.00082 32.5 1.2 21 319-339 44-64 (241)
72 PF02439 Adeno_E3_CR2: Adenovi 23.2 1.9E+02 0.0041 20.4 4.0 30 3-32 4-33 (38)
73 TIGR01645 half-pint poly-U bin 23.1 97 0.0021 36.0 4.4 38 200-242 203-240 (612)
74 KOG0110 RNA-binding protein (R 22.9 1.1E+02 0.0023 35.6 4.4 36 319-354 559-596 (725)
75 PF08946 Osmo_CC: Osmosensory 22.0 1.1E+02 0.0024 22.3 2.8 19 293-311 16-34 (46)
76 KOG1548 Transcription elongati 20.4 1.9E+02 0.0041 30.7 5.4 47 297-343 285-337 (382)
No 1
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=100.00 E-value=4.3e-107 Score=889.58 Aligned_cols=607 Identities=26% Similarity=0.462 Sum_probs=546.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeccccccCCCCCCCCCCCcccccccccccccccccccchHhhcCC
Q 005776 3 TLADIGVSAALNILGAFIFLIAFAILRLQPFNDRVYFPKWYLKGLRDSPTHGGAFVRKFVNLDFRSYIRFLNWMPEALKM 82 (677)
Q Consensus 3 ~~~~~~tsl~~n~~~~~~~~~~F~~LR~~~~~~~iY~pr~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~Wi~~~~~~ 82 (677)
+.++++|++++++.++++++++|++||+| ++++|+||+..++.. . ++|++.|+|+|||+.+++++
T Consensus 20 s~~~~~t~l~f~~~~~~~~l~~f~iLR~r--~k~lY~pr~~~~~~~---~----------~~P~~~~ss~~gWl~~L~~i 84 (827)
T COG5594 20 STSAVITQLVFAGLIFLVFLILFLILRKR--WKRLYAPRTNFDGQN---E----------CLPEPNPSSYWGWLEPLVKI 84 (827)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHH--HhHhcCcceeecCCC---c----------ccCCCCccchHHHHHHHHhC
Confidence 57899999999999999999999999975 899999999877543 0 12234678999999999999
Q ss_pred ChhHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCccccccccCcCcCccccccccCcCCCCcchhhh
Q 005776 83 PEPELIEHAGLDSAVYLRIYLIGLKIFVPIALVAWSVLVPVNWTNDTLDVAVKISNVTASDIDKLSISNVPLKSQRFWTH 162 (677)
Q Consensus 83 ~d~~il~~~GlDa~~fLrFlr~~~~lf~~~~v~~~~ILlPin~~g~~~~~~~~~~~~~~~~l~~~TisNv~~~s~~lw~h 162 (677)
+|+.+++++|+|||+||||+||+++++++.|++++|||+|||++.++..++. ....++++++|++|+.+ ++++|+|
T Consensus 85 ~d~~~l~~aGlD~y~fLrflkm~~~~~~i~sl~~ipIL~Pvn~~~~~~~~gn---~~s~s~l~~Ls~~Nv~~-~n~~~aH 160 (827)
T COG5594 85 PDEFLLQYAGLDGYFFLRFLKMLIKLLFILSLILIPILLPVNYHFQKATNGN---SDSESGLDKLSISNVSP-SNRLYAH 160 (827)
T ss_pred CHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHhHEeeeeeecccccccCC---ccchhhhhHhhhhcccC-CCceeee
Confidence 9999999999999999999999999999999999999999998875543221 02458999999999986 8899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC---------CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCce
Q 005776 163 VVMAYAFTFWTCYVLLKEYEKVANLRLQFVASEKR---------RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHY 233 (677)
Q Consensus 163 ~i~~~l~t~~~~~~l~~e~~~~~~~R~~~l~~~~~---------~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v 233 (677)
++..|++.++++|.+++|++.++.+||++++++.. +.++||++++++|.+... .+.+.++|++...+++
T Consensus 161 vf~~~~f~~~vlfii~~el~~y~~lr~a~~~~p~y~qs~~~~~~~~ssRTvlis~LP~~~~~--~e~L~~~~~kl~~~~i 238 (827)
T COG5594 161 VFLSWFFFGYVLFIIFRELRFYVVLRQAYLRSPLYQQSLLTLQNNLSSRTVLISGLPSELRS--DEELKELFDKLKVGEI 238 (827)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHhhccCCCCceEEeecCChhhcC--chhHHHHHhhcCeeee
Confidence 99999999999999999999999999999988752 348999999999996532 1458888988888888
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHHhhh-------hh-----cc--------------------CCCCCCccccccc
Q 005776 234 LTHQVVVNANKLAKLVKKKKKLQNWLDYYQL-------KY-----SR--------------------NNSKRPMMKTGFL 281 (677)
Q Consensus 234 ~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~-------k~-----~~--------------------~~~~rp~~r~~~~ 281 (677)
.+..+|||.+.++++.++|++..+++|...+ |. .+ +..+||+||.+-.
T Consensus 239 ~~~~l~~~~~~l~~l~k~R~ki~~klE~~~~~~~~~~~K~~~~~~~K~~~~L~~~~~k~~~~~~~y~~~~~Rp~~~i~k~ 318 (827)
T COG5594 239 DSDVLCRDLGTLQELYKERDKILKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEILPEYVPDKKRPKHRIKKL 318 (827)
T ss_pred ccchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCcccccchhhhhhccccccchhhhhhh
Confidence 8899999999999999999999998884221 11 00 1246999887644
Q ss_pred --cCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCCCCCcce-eeeCCCCCC
Q 005776 282 --GLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTRNPTLWL-TEWASEPRD 358 (677)
Q Consensus 282 --~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~~~~~~-v~~AP~P~D 358 (677)
++.|||||+|||+++++.+++++|++.|+...... ++++|||||+|+.+||.|+|....+++.... ++.||+|+|
T Consensus 319 ~~~i~gKkVdaI~y~s~~l~~l~~~i~~~r~~~~~~t--~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPnD 396 (827)
T COG5594 319 NKGIFGKKVDAIDYYSAKLTKLDAEIENARKSLYENT--PTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPND 396 (827)
T ss_pred hhhhccceecHHHHHHHHHHHHHHHHHHHHhCccccC--ccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCccc
Confidence 67899999999999999999999999999876543 4679999999999999999999888886655 999999999
Q ss_pred eeecccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHhhcccchhh-hhchhHHHHHhhhhhHHHHHHH
Q 005776 359 VYWQNLAIPYVSLSVRRLIMGVAFFFLTFFFMIPIAIVQSFASIEGIEKAVPFLKPV-IEAKFIKSVIQGFLPGIALKLF 437 (677)
Q Consensus 359 IiW~NL~~~~~~r~~R~~~~~~~~~~l~i~~~iPv~~v~~l~~~~~l~~~~p~l~~~-~~~~~~~~~i~~~lP~l~l~i~ 437 (677)
|+|+|+..++++|..|++.++++.++++++|++|||+++.++|++++++.+||++.+ .+.|+++++++|+||++++.++
T Consensus 397 i~W~Nl~ls~~~r~~k~~~~ni~~il~II~w~~pVa~v~~i~Nl~~l~~~~p~l~~il~~~~~l~~iltglLptv~~~~l 476 (827)
T COG5594 397 IIWDNLRLSRKERLFKRISANILFILLIILWAFPVAFVGTISNLNTLSSLWPFLKFILKDPPFLAGILTGLLPTVALSLL 476 (827)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHhhhhHHHHHHHhccHHHHHHHHhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 5668999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHcccCCCHHHHHhhhCCCchHHHH
Q 005776 438 LIFLPTILMIMSKFEGFISLSSLERRAATRYYLFNFVNVFLGSIIAGTAFEQLNSFLKQSANDIPKTIGIAIPKKATFFI 517 (677)
Q Consensus 438 ~~llp~il~~ls~~eg~~T~S~~~~s~~~k~f~f~~vn~~lv~~l~~s~~~~l~~~~~~p~~~i~~~l~~~lp~~s~ffi 517 (677)
+.++|+++++++.+||..|+|+.|..++.|||.|+|+|+|+|.++++++.+.+.+..++| .+++.+||+++|++|+||+
T Consensus 477 ~~ivP~fir~Ls~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~Tl~s~fss~v~~~~ke~-~s~~~llA~~lpk~SnFfi 555 (827)
T COG5594 477 MSIVPYFIRWLSYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLASSFSSIVWSLLKEP-TSIMTLLANNLPKASNFFI 555 (827)
T ss_pred HHHhHHHHHHHHHhcCccchHHHHHHHHhhhhhheeeeehheeeehhHHHHHHHHHhcCh-HhHHHHHHhccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888888899999 8999999999999999999
Q ss_pred HHHHHHHhhhhHHHhhhhHHHHHHHHHHhhhcCCHHHH-hhccCCCCCCCccchhHHHHHHHHHHHHHhhhhHHHHHHHH
Q 005776 518 TYIMVDGWAGIAGEILMLKPLIIFHLKNFFLVKTEKDR-VEAMDPGSLGFNSGEPRIQFYFLLGLVYATVTPLLLPFIIV 596 (677)
Q Consensus 518 ~yii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~T~r~~-~~~~~~~~f~~g~~y~~~l~i~~i~l~Ys~i~Plil~~~~~ 596 (677)
+|+++||+++++++|+|+++|+.++++.++.++|||++ +++..++.|+||..||+.+.+++|+++||+++|+|+.||++
T Consensus 556 ~~iilqgl~~~~~~LLqi~~Ll~~~vl~kf~~~TpR~k~nr~~~~~~f~~G~v~P~~~~l~~I~icYSiisPlILlf~~v 635 (827)
T COG5594 556 SYIILQGLSGFPGTLLQIVPLLLSLVLGKFKDSTPRQKWNRLETPPSFQFGTVLPQPILLFTITICYSIISPLILLFGAV 635 (827)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHhhhhhcCCChHHHHhhccCCCccccccccchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999996 67777999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhheeEeecC----------chhhhhhHHHHH--hhhhh
Q 005776 597 FFALAYVVFRHQVKSQFFDY----------TMFNLVDNLKCA--CRKGL 633 (677)
Q Consensus 597 ~f~~~y~v~Ky~ll~vy~~~----------~~~~~~~~~~~~--~~~~~ 633 (677)
+|++.|++|||+++|++... .+.|++++++.+ |+.|+
T Consensus 636 ~F~~~ylaykY~l~Yv~~~~~es~G~~w~~al~qiivGl~l~qv~l~gl 684 (827)
T COG5594 636 YFILNYLAYKYNLIYVSNHSPESGGGYWPRALFQIIVGLYLFQVCLLGL 684 (827)
T ss_pred HHHHHHHHHHHHhhhccCCCcccCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999872 366778887765 88775
No 2
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=1.4e-103 Score=893.93 Aligned_cols=597 Identities=50% Similarity=0.860 Sum_probs=550.0
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeccccccCCCCCCCCCCCccccccccccccccccc-ccchHhh
Q 005776 1 MATLADIGVSAALNILGAFIFLIAFAILRLQPFNDRVYFPKWYLKGLRDSPTHGGAFVRKFVNLDFRSYIRF-LNWMPEA 79 (677)
Q Consensus 1 ~~~~~~~~tsl~~n~~~~~~~~~~F~~LR~~~~~~~iY~pr~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~-~~Wi~~~ 79 (677)
|++.+++..+-.+|...+..++.+|.+++.++++.++|.|++++.+.+..|.... ..+.|++. |+|++++
T Consensus 1 ~~~~~~~~~~s~~~~~~~~~~~~~~~~l~l~~~~~~vy~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~Wl~~~ 71 (728)
T KOG1134|consen 1 MATFESIGISSTLNLNSAFAFLFLFLFLRLQPRNFRVYLPIWSLKGLRSSPIESK---------VEPVPSSVNFGWLPAL 71 (728)
T ss_pred CCccccccccccccchhhHHHHHHHHHHHhhhcceEEEEeeeeeccccCcCcccc---------CCCCCCcccccchHHH
Confidence 5666666677777777788888888888888999999999999887654333211 11244455 9999999
Q ss_pred cCCChhHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCccccccccCcCcCccccccccCcCCCCcch
Q 005776 80 LKMPEPELIEHAGLDSAVYLRIYLIGLKIFVPIALVAWSVLVPVNWTNDTLDVAVKISNVTASDIDKLSISNVPLKSQRF 159 (677)
Q Consensus 80 ~~~~d~~il~~~GlDa~~fLrFlr~~~~lf~~~~v~~~~ILlPin~~g~~~~~~~~~~~~~~~~l~~~TisNv~~~s~~l 159 (677)
+|++|+|+++++|+||++||||+++++++|+++++++++|++|||+++++.+..+ .+++|++|++|++.+++++
T Consensus 72 ~k~~~~ei~~~~GlDa~~~L~~~~~~~~lf~~~~~l~~~illPVn~~~~~~~~~~------~~s~~~ls~snv~~~s~~l 145 (728)
T KOG1134|consen 72 LKIPDEEILEHAGLDAYVFLRFLKLGIKLFAVLSLLSVPILLPVNWTNGNLELGN------EDSLDKLSISNVQPGSSLL 145 (728)
T ss_pred hcCCHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhheEEeeEEEecCcccccc------cchhhhhhheeccCCCCCE
Confidence 9999999999999999999999999999999999999999999999999876431 1279999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEE
Q 005776 160 WTHVVMAYAFTFWTCYVLLKEYEKVANLRLQFVASEKRRPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (677)
Q Consensus 160 w~h~i~~~l~t~~~~~~l~~e~~~~~~~R~~~l~~~~~~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (677)
|+|++++|++++++++++++||+++..+|+++++++.+.++..|+.++++|...+.+..+.++++|+..+|+++.+++++
T Consensus 146 w~Hv~~~y~~~~~~~~~l~~e~~~~~~~R~~~l~~~~~~~~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 225 (728)
T KOG1134|consen 146 WAHVFFTYLFTFFTLFILYREYKHVASIRQAYLASPKYRPDQSSVLVRNVPPPDGVSVSVIVRHFFSLNHPVKVRSHQVV 225 (728)
T ss_pred EEEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcCccccchhhhcccCCCCCchhhHHhhhhhccCCceeehhHHH
Confidence 99999999999999999999999999999999999999999999999999965555667788899999999999999999
Q ss_pred ecchhHHHHHHHHHHH-HHHHHHhhhhhccCCCCCCccccccccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 005776 240 VNANKLAKLVKKKKKL-QNWLDYYQLKYSRNNSKRPMMKTGFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKA 318 (677)
Q Consensus 240 ~~~~~L~~L~~~r~~~-~~~le~~~~k~~~~~~~rp~~r~~~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~ 318 (677)
+|..++.++.++++|+ ++++.+...+..++..+||++|.|+|+++|+||||||||++|+++++++|+++|+...++.
T Consensus 226 ~~~~~l~~l~~~~~k~~~~~l~~~~~~~~~~~~~rP~~k~~~~~l~gkkvdai~yy~~kl~~l~~~i~~~~~~~~~~~-- 303 (728)
T KOG1134|consen 226 YNESKLSKLLSKLKKLRENKLYKEHKRLKSNPKKRPKRKLGFCGLFGKKVDAIDYYSEKLQELSEDIEELRESLYEEK-- 303 (728)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHhhhhhccccccCCcceeeeeeeecceecHHHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 9999999999999999 5555544444444444899999999999999999999999999999999999999988762
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCCCCCcceeeeCCCCCCeeecccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTRNPTLWLTEWASEPRDVYWQNLAIPYVSLSVRRLIMGVAFFFLTFFFMIPIAIVQS 398 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~~~~~~l~i~~~iPv~~v~~ 398 (677)
..|.|||||+|+.+|+.|+|..+++++..|.++.||||+||.|+|+.++..+|+.|+++++++.+++++||++|+++|++
T Consensus 304 ~~~~aFVtf~sr~~A~~~aq~~~~~~~~~w~~~~APeP~Di~W~nl~i~~~~~~~~~~~~~~~~~~li~f~~iPva~V~~ 383 (728)
T KOG1134|consen 304 PLPAAFVTFKSRYGAAVAAQTQQSLNPTKWLTEFAPEPRDIYWDNLAISYVERYLRRFLVNVALFLLLFFWIIPVAFVQA 383 (728)
T ss_pred CCceEEEEEEeeHHHHHHHHhhhcCCCCceEEEecCCcccceecccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhChhhHHhhcccchhhhhchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhhHHHHHHHH
Q 005776 399 FASIEGIEKAVPFLKPVIEAKFIKSVIQGFLPGIALKLFLIFLPTILMIMSKFEGFISLSSLERRAATRYYLFNFVNVFL 478 (677)
Q Consensus 399 l~~~~~l~~~~p~l~~~~~~~~~~~~i~~~lP~l~l~i~~~llp~il~~ls~~eg~~T~S~~~~s~~~k~f~f~~vn~~l 478 (677)
++|+++|++.+||++.+.+.++++++++|+||++++.++++++|.++++++++|||.|+|+.|++.+.|+|+|+++|+|+
T Consensus 384 l~nl~~l~~~~Pflk~i~~~~~i~~vI~gfLP~l~l~~~~~~lP~~l~~ls~~eG~~s~S~~e~~a~~k~~~F~~~nvFl 463 (728)
T KOG1134|consen 384 LTNLEGLSKVFPFLKPILEMKFISSVITGFLPTLALVIFLALLPPFLRYLSKLEGLISRSEEERSALNKYYIFLLVNVFL 463 (728)
T ss_pred HHhhhhhhhccchhhhhhhcchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHhHHHHHHhhhHH
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHcccCCCHHHHHhhhCCCchHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhhcCCHHHHhhc
Q 005776 479 GSIIAGTAFEQLNSFLKQSANDIPKTIGIAIPKKATFFITYIMVDGWAGIAGEILMLKPLIIFHLKNFFLVKTEKDRVEA 558 (677)
Q Consensus 479 v~~l~~s~~~~l~~~~~~p~~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~T~r~~~~~ 558 (677)
+++++|+++..+..++++| .+++..+|.++|++++||++|++++|++|.+++++|+++++++.+++.+..+|||++++.
T Consensus 464 ~~~l~~sa~~~~~~~l~~p-~~i~~~la~~lP~~a~Ff~~yii~~g~~g~~~ellrl~~Li~~~i~~~~~~~t~~~~~e~ 542 (728)
T KOG1134|consen 464 VVTLSGSALRQLLSILSTP-RLIPKLLAAALPKQASFFITYIITSGWAGFAGELLRLVPLIIYLLKKLFLKSTPRDREER 542 (728)
T ss_pred HhhhhHHHHHHHHHHhcCH-hHHHHHHhhhChhhHHHHHHHHHHhccchhhHHHhcchhHHHHHHHHHHcccchhhhhhh
Confidence 9999999999988888887 899999999999999999999999999999999999999999999998889999999999
Q ss_pred cCC-CCCCCccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhheeEeec
Q 005776 559 MDP-GSLGFNSGEPRIQFYFLLGLVYATVTPLLLPFIIVFFALAYVVFRHQVKSQFFD 615 (677)
Q Consensus 559 ~~~-~~f~~g~~y~~~l~i~~i~l~Ys~i~Plil~~~~~~f~~~y~v~Ky~ll~vy~~ 615 (677)
+++ +.+++|..||+.+++++||++||+++|+|+|||++||++.|+|||||++|||.+
T Consensus 543 ~~p~~~~~~g~~yP~~~~~f~i~i~YsviaPlILpF~lvyF~l~y~vyr~ql~yvy~~ 600 (728)
T KOG1134|consen 543 YEPLSSFYFGTIYPRILLIFTIGICYSVIAPLILPFGLVYFCLAYLVYRYQLIYVYNQ 600 (728)
T ss_pred cCCccccchhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhheeecc
Confidence 986 899999999999999999999999999999999999999999999999999995
No 3
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=100.00 E-value=2e-59 Score=499.40 Aligned_cols=305 Identities=32% Similarity=0.605 Sum_probs=291.9
Q ss_pred EEEEecCHHHHHHHHHhhcCCCCCcceeeeCCCCCCeeecccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh
Q 005776 323 AFVSFNSRWGAAVCAQTQQTRNPTLWLTEWASEPRDVYWQNLAIPYVSLSVRRLIMGVAFFFLTFFFMIPIAIVQSFASI 402 (677)
Q Consensus 323 AFVtF~s~~~a~~~~q~~~~~~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~~~~~~l~i~~~iPv~~v~~l~~~ 402 (677)
|||||+++++|+.|+|...+++|++|++++||||+||+||||+.+..+|..|++++++++++++++|++|++++++++|+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~~~~~~l~i~~~ipv~~v~~l~~l 80 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVNILLFLLIIFWTIPVAFVSALSNL 80 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhcccchhh-hhchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhhHHHHHHHHHHH
Q 005776 403 EGIEKAVPFLKPV-IEAKFIKSVIQGFLPGIALKLFLIFLPTILMIMSKFEGFISLSSLERRAATRYYLFNFVNVFLGSI 481 (677)
Q Consensus 403 ~~l~~~~p~l~~~-~~~~~~~~~i~~~lP~l~l~i~~~llp~il~~ls~~eg~~T~S~~~~s~~~k~f~f~~vn~~lv~~ 481 (677)
+++++..|++++. +.++...++++|++|+++++++|.++|.++++++++|||.|+|+.|+++++|+|+||++|++++++
T Consensus 81 ~~l~~~~~~l~~~~~~~~~~~~~i~~~lp~l~l~~~~~llp~ii~~ls~~e~~~s~S~~~~sv~~k~f~f~~~n~~lv~~ 160 (325)
T PF02714_consen 81 DTLKKVIPFLQWIISFSPWLLSLIQGILPSLLLSIFNALLPIIIRFLSKFEGHKSRSEVERSVLRKLFFFLFFNVFLVPS 160 (325)
T ss_pred cchhccchhhHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 456788899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHcccCCCHHHHHhhhCCCchHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhhhcCCHHHHhhcc-C
Q 005776 482 IAGTAFEQLNSFLKQSANDIPKTIGIAIPKKATFFITYIMVDGWAGIAGEILMLKPLIIFHLKNFFLVKTEKDRVEAM-D 560 (677)
Q Consensus 482 l~~s~~~~l~~~~~~p~~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~T~r~~~~~~-~ 560 (677)
+++++++.+.++.++| +++.+.+|+++|++++||++|++++++.+.+++|+|+++++++.+++++..+||||+++.+ +
T Consensus 161 l~~~~~~~~~~~~~~~-~~i~~~l~~~lp~~s~ffi~~ii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~t~r~~~~~~~~ 239 (325)
T PF02714_consen 161 LAGTILSALKNIINNP-GSILQLLGNFLPNSSNFFINYIILQAFIGSPLELLRPPPLIIYYIRRKFFSKTPRELNELYTE 239 (325)
T ss_pred hhHHHHHHHHHHHhCc-chHHHHHHHHhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCC
Confidence 9999999998999999 8999999999999999999999999999999999999999999998877679999999988 9
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhheeEeec-----CchhhhhhHHHHH
Q 005776 561 PGSLGFNSGEPRIQFYFLLGLVYATVTPLLLPFIIVFFALAYVVFRHQVKSQFFD-----YTMFNLVDNLKCA 628 (677)
Q Consensus 561 ~~~f~~g~~y~~~l~i~~i~l~Ys~i~Plil~~~~~~f~~~y~v~Ky~ll~vy~~-----~~~~~~~~~~~~~ 628 (677)
+|+|+||..||+.+++++|+++||+++|+++|+|++||++.|++||||++|||++ |.+|+...+..++
T Consensus 240 ~~~f~~~~~ya~~l~v~~i~l~ys~i~Plil~~~~~yf~l~y~v~ky~llyvy~~~~es~G~~~~~~~~~~~~ 312 (325)
T PF02714_consen 240 PPPFDYGYQYAQMLLVFFIGLFYSPIAPLILPFGLVYFLLKYFVDKYNLLYVYRPKYESGGRLWPTAFNRLLF 312 (325)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhheeeeccCCCCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 3588888877764
No 4
>PF13967 RSN1_TM: Late exocytosis, associated with Golgi transport
Probab=100.00 E-value=2.1e-34 Score=273.15 Aligned_cols=156 Identities=36% Similarity=0.663 Sum_probs=136.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeccccccCC-CCCCCCCCCcccccccccccccccccccchHhhcCCCh
Q 005776 6 DIGVSAALNILGAFIFLIAFAILRLQPFNDRVYFPKWYLKG-LRDSPTHGGAFVRKFVNLDFRSYIRFLNWMPEALKMPE 84 (677)
Q Consensus 6 ~~~tsl~~n~~~~~~~~~~F~~LR~~~~~~~iY~pr~~~~~-~~~~p~~~~~~~~~~~~l~~~~~~~~~~Wi~~~~~~~d 84 (677)
++++++++|++++++++++|++||++ ++++|+||.+.++ ..+.|+ ++.++|+|+|++++++++|
T Consensus 1 s~~~sl~~~~~i~~~~~~~F~~lR~~--~~~iY~pR~~~~~~~~~~~~-------------~~~~~g~f~Wi~~~~~~~d 65 (157)
T PF13967_consen 1 SFLTSLAINLIIFLVLLLLFCILRKR--FPRIYQPRSYLPHPEPERPP-------------PLPSRGFFGWIKPVFKISD 65 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc--cHHhcccccccCCcccccCC-------------CCCCCCchHHHHHHHcCCH
Confidence 58899999999999999999999985 8999999998763 111111 1134699999999999999
Q ss_pred hHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhheeeeeecCCCccccccccCcCcCccccccccCcCCCCcchhhhHH
Q 005776 85 PELIEHAGLDSAVYLRIYLIGLKIFVPIALVAWSVLVPVNWTNDTLDVAVKISNVTASDIDKLSISNVPLKSQRFWTHVV 164 (677)
Q Consensus 85 ~~il~~~GlDa~~fLrFlr~~~~lf~~~~v~~~~ILlPin~~g~~~~~~~~~~~~~~~~l~~~TisNv~~~s~~lw~h~i 164 (677)
+|++++||+||++|+||+|+++++|+++++++++||+|+|++|++.++.. ...+++|++|++|++++++++|+|++
T Consensus 66 ~~i~~~~GlDa~~flrflr~~~~~f~~~~i~~~~vLlPi~~~~~~~~~~~----~~~~~l~~~tisnv~~~s~~lw~h~v 141 (157)
T PF13967_consen 66 DEILRHCGLDAYVFLRFLRMLIKIFLFLSILSLPVLLPINYTGGDDDGDS----DNESGLDRLTISNVPKGSSRLWAHVV 141 (157)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHheeeeEEeCCCCcccc----ccccccccccHHhhcCCCCeehHHHH
Confidence 99999999999999999999999999999999999999999998875321 11279999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 005776 165 MAYAFTFWTCYVLLKE 180 (677)
Q Consensus 165 ~~~l~t~~~~~~l~~e 180 (677)
++|++++++++++++|
T Consensus 142 ~~~i~~~~~~~~l~~E 157 (157)
T PF13967_consen 142 FAYIFTFYVLYLLWRE 157 (157)
T ss_pred HHHHHHHHHHhhheeC
Confidence 9999999999999876
No 5
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=99.01 E-value=9.1e-08 Score=106.81 Aligned_cols=193 Identities=11% Similarity=0.133 Sum_probs=128.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHcccCCCH
Q 005776 422 KSVIQGFLPGIALKLFLIFLPTILMIMSKFEGFISLSSLERRAATRYYLFNFVNVFLGSIIAGTAFEQLNSFLKQSANDI 501 (677)
Q Consensus 422 ~~~i~~~lP~l~l~i~~~llp~il~~ls~~eg~~T~S~~~~s~~~k~f~f~~vn~~lv~~l~~s~~~~l~~~~~~p~~~i 501 (677)
.+++.+++-++.+.++|.+...+..++.++|.|.|.|+.|.|...|.|+|+|+|.+.-.... +.+.. ..++. -+.
T Consensus 162 ~~~~~~vl~~v~i~il~~iy~~~a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~Lfyi-aF~~~---~~~~~-~~~ 236 (452)
T PF04547_consen 162 ASLIPTVLNAVVILILNFIYRKLAKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFYI-AFFYG---VRQEE-CQP 236 (452)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh---hcccc-cCC
Confidence 34445555555666667777788899999999999999999999999999999998754432 22211 11111 000
Q ss_pred HHHHhhhCCCchHHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHh-hh---cCCH-----------H---HHhhccCCCC
Q 005776 502 PKTIGIAIPKKATFFITYIMVDGWAGIAGEILMLKPLIIFHLKNF-FL---VKTE-----------K---DRVEAMDPGS 563 (677)
Q Consensus 502 ~~~l~~~lp~~s~ffi~yii~~~~~~~~~~Ll~~~~l~~~~~~~~-~~---~~T~-----------r---~~~~~~~~~~ 563 (677)
++.+-+..+..+++++-+.....+. +.|.+.+..+++ .. .+++ + +..+-.+.++
T Consensus 237 ------~~~~L~~ql~~~~~~~qi~~~~~e~--~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~ 308 (452)
T PF04547_consen 237 ------CLSRLRIQLFTIMVTKQIINNLLEV--VLPYLKKRYRRKKIRKKQRKKQQDERQENEEENQFLQQWEKEYELPP 308 (452)
T ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhcccccccccccccchHHHHHHHhcCCC
Confidence 1111233444555555555555565 355555555433 11 1111 0 1112235666
Q ss_pred CCCc---cchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhheeEeecC--------chhhhhhHHHH
Q 005776 564 LGFN---SGEPRIQFYFLLGLVYATVTPLLLPFIIVFFALAYVVFRHQVKSQFFDY--------TMFNLVDNLKC 627 (677)
Q Consensus 564 f~~g---~~y~~~l~i~~i~l~Ys~i~Plil~~~~~~f~~~y~v~Ky~ll~vy~~~--------~~~~~~~~~~~ 627 (677)
++-. .+|..+..-+-....||++.|+...++++--.+-..+|++.+++.++|+ ++|..+...++
T Consensus 309 y~~~g~~~dY~emviQFGyv~lF~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~IG~W~~il~~i~ 383 (452)
T PF04547_consen 309 YDPDGLFDDYLEMVIQFGYVTLFSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSIGIWNNILEIIS 383 (452)
T ss_pred CCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccchhhhHHHHHHHH
Confidence 6644 8999999999999999999999999999999999999999999999985 47765554443
No 6
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=98.91 E-value=1.8e-09 Score=91.41 Aligned_cols=65 Identities=43% Similarity=0.689 Sum_probs=52.2
Q ss_pred EEecchhHHHHHHHHHHHHHHHHHhhhhhccCC-------------------CCCCccccccccCCC-cccCHHHHHHHH
Q 005776 238 VVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNN-------------------SKRPMMKTGFLGLWG-EKVDGIDYHISE 297 (677)
Q Consensus 238 i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~-------------------~~rp~~r~~~~~~~g-~kvDai~~~~~~ 297 (677)
+|||+++|.+|+++|+++.++||.+..++.+.. ..||+++.|++|++| +||||||||++|
T Consensus 1 i~rd~~~L~~Lv~~R~~~~~kLE~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kVDaIdyy~~e 80 (85)
T PF14703_consen 1 ICRDWSKLEKLVEEREKAVRKLESAESKYLKNANKRPKKRPKKKKKSESSSNKKRPRHRTGFLGLFGGKKVDAIDYYREE 80 (85)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCccccCccccccccCCCCCCCcCCCCCCCcchHHHHHHHH
Confidence 589999999999999999999997654332211 125566668889998 999999999999
Q ss_pred HHHHH
Q 005776 298 IEKLS 302 (677)
Q Consensus 298 l~~l~ 302 (677)
+++||
T Consensus 81 l~~Ln 85 (85)
T PF14703_consen 81 LKELN 85 (85)
T ss_pred HHHhC
Confidence 99875
No 7
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=0.013 Score=64.97 Aligned_cols=231 Identities=14% Similarity=0.145 Sum_probs=131.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHhhcccchhhhhchhHHHHHhhhhhHHHHHHHHHHHHHH
Q 005776 365 AIPYVSLSVRRLIMGVAFFFLTFFFMIPIAIVQSFASIEGIEKAVPFLKPVIEAKFIKSVIQGFLPGIALKLFLIFLPTI 444 (677)
Q Consensus 365 ~~~~~~r~~R~~~~~~~~~~l~i~~~iPv~~v~~l~~~~~l~~~~p~l~~~~~~~~~~~~i~~~lP~l~l~i~~~llp~i 444 (677)
..+.|.|..|+..+.+-+++++++...++.+...-...-.+ .....| ..-+-.++|++++.++..++..+
T Consensus 260 ~yp~w~~~~~~~~vsvPv~l~c~~i~l~f~l~~f~ie~~~~--------s~~~~~--~~sils~lP~iv~~~li~~~t~~ 329 (647)
T KOG2513|consen 260 YYPEWKRILRRYLVSVPVILLCLCILLSFMLYCFQIEVWVL--------SDYGGP--LISILSYLPTIVYAVLIPVLTRI 329 (647)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHcCCc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888999988888777777776666665543221111 111223 22344678888887777666555
Q ss_pred H----HHHHhhcCCcchhHHHHHHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHcccCCCHHHHHhhhCCCchHHHHHHH
Q 005776 445 L----MIMSKFEGFISLSSLERRAATRYYLFNFVNVFLGSIIAGTAFEQLNSFLKQSANDIPKTIGIAIPKKATFFITYI 520 (677)
Q Consensus 445 l----~~ls~~eg~~T~S~~~~s~~~k~f~f~~vn~~lv~~l~~s~~~~l~~~~~~p~~~i~~~l~~~lp~~s~ffi~yi 520 (677)
. .++.++|-|.|+|.++.+...|.+.|+|+|.++-.+..+-+..-.. .+. ..+++-+- .+.+
T Consensus 330 Y~k~Ae~Lt~~EN~r~~s~y~~hli~K~~lf~f~nsy~sLFyi~f~l~d~~-~Lk-------~~l~~~li------~sQ~ 395 (647)
T KOG2513|consen 330 YKKLAEFLTKLENHRLESAYQKHLIAKVFLFNFVNSYLSLFYIAFLLRDME-LLK-------QQLATLLI------TSQS 395 (647)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHH-------HHHHHHHH------HHHH
Confidence 5 4556789999999999999999999999999875444322211111 011 11111110 0000
Q ss_pred HHHHhhhhHHHhhhhHHH--------HHHHHHHhhh---cCCHHHHh---------------------hc--cCC--CCC
Q 005776 521 MVDGWAGIAGEILMLKPL--------IIFHLKNFFL---VKTEKDRV---------------------EA--MDP--GSL 564 (677)
Q Consensus 521 i~~~~~~~~~~Ll~~~~l--------~~~~~~~~~~---~~T~r~~~---------------------~~--~~~--~~f 564 (677)
....++...+.-. -.+..++.+. ..+|.+.+ +. .+. .++
T Consensus 396 -----l~~~~e~~~p~f~~~~~r~~~~~~f~t~~~ae~~~s~~~~i~~~~~~~~~~s~~~~a~~~~~~~qa~~E~~~~~y 470 (647)
T KOG2513|consen 396 -----LLNLMEIALPYFKIRTKRYENYIRFRTKSFAEELASAQAKIDGESPGFPAPSREPEAQLFPSLKQAELESGLAEY 470 (647)
T ss_pred -----HHHHHhhcchHHHHhhhhhhhhhhHHHHHHHHhhccchhhhcccccCCCCcccccchhhcccchhhhhcchhhhh
Confidence 0011111100000 0000011100 11111111 00 111 122
Q ss_pred C-CccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhheeEeecC--------chhhhhhH
Q 005776 565 G-FNSGEPRIQFYFLLGLVYATVTPLLLPFIIVFFALAYVVFRHQVKSQFFDY--------TMFNLVDN 624 (677)
Q Consensus 565 ~-~g~~y~~~l~i~~i~l~Ys~i~Plil~~~~~~f~~~y~v~Ky~ll~vy~~~--------~~~~~~~~ 624 (677)
| --..|=.+.+-|-..++||++.|+-..+|++-=.+-+=+|-+.+..+.+|+ +.|+...-
T Consensus 471 dgtf~Dylel~lQFGyvVlFS~~~PLA~~~aLvnNv~eirsda~Kl~~~~krPfp~r~~~IG~Wq~~l~ 539 (647)
T KOG2513|consen 471 DGTFDDYLELLLQFGYVVLFSCAFPLAAIFALVNNVIEIRSDALKLCLVLKRPFPRRVANIGAWQNALE 539 (647)
T ss_pred cchhHHHHHHHHHhhHHHHHHhHhhHHHHHHHHHHHhhhhHHHHHHHHhcCCCCcchhhhhHHHHHHHH
Confidence 2 224455677778888999999999999999999999999999999999985 46665543
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=96.65 E-value=0.0066 Score=65.05 Aligned_cols=42 Identities=12% Similarity=0.159 Sum_probs=33.5
Q ss_pred CCCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecch
Q 005776 197 RRPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNAN 243 (677)
Q Consensus 197 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~ 243 (677)
...+..||.|.|||.+.+| +.|+++|++. +.|.++.++.|..
T Consensus 103 ~~~~~~~LfVgnLp~~~te---~~L~~lF~~~--G~V~~v~i~~d~~ 144 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTD---RELYALFRTI--GPINTCRIMRDYK 144 (346)
T ss_pred CCCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEecCC
Confidence 3457789999999999876 7889999887 4577888887653
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=95.68 E-value=0.051 Score=57.67 Aligned_cols=133 Identities=16% Similarity=0.193 Sum_probs=69.6
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHH---------HHHHHHHHHHHHHHHh--------
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLA---------KLVKKKKKLQNWLDYY-------- 262 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~---------~L~~~r~~~~~~le~~-------- 262 (677)
+.--+.|-.||+...| +.++++|+++ |.|.++.+.+|-..=. .-.++.+++.+.|...
T Consensus 33 ~~vKlfVgqIprt~sE---~dlr~lFe~y--g~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASE---KDLRELFEKY--GNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred hhhhheeccCCccccH---HHHHHHHHHh--CceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 3345688899998776 5688888887 6777887777643211 1122222333222100
Q ss_pred --hhhhccCCCCC-CccccccccCCCcccCHHHHHHHHHHHHHHH---HHHHHHhhcCCCCCCCCeEEEEecCHHHHHHH
Q 005776 263 --QLKYSRNNSKR-PMMKTGFLGLWGEKVDGIDYHISEIEKLSKE---IAEERERVVSDPKAIMPAAFVSFNSRWGAAVC 336 (677)
Q Consensus 263 --~~k~~~~~~~r-p~~r~~~~~~~g~kvDai~~~~~~l~~l~~~---I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~ 336 (677)
+-|+...+..| +..++=|.|+..++.. +++++++-.+ |++.+--.+.+. ...|+|||+|.+.+.|..|
T Consensus 108 pvqvk~Ad~E~er~~~e~KLFvg~lsK~~t-----e~evr~iFs~fG~Ied~~ilrd~~~-~sRGcaFV~fstke~A~~A 181 (510)
T KOG0144|consen 108 PVQVKYADGERERIVEERKLFVGMLSKQCT-----ENEVREIFSRFGHIEDCYILRDPDG-LSRGCAFVKFSTKEMAVAA 181 (510)
T ss_pred ceeecccchhhhccccchhhhhhhcccccc-----HHHHHHHHHhhCccchhhheecccc-cccceeEEEEehHHHHHHH
Confidence 01111111111 1111113344445543 4455555443 333322111222 2569999999999999999
Q ss_pred HHhhcCC
Q 005776 337 AQTQQTR 343 (677)
Q Consensus 337 ~q~~~~~ 343 (677)
...+...
T Consensus 182 ika~ng~ 188 (510)
T KOG0144|consen 182 IKALNGT 188 (510)
T ss_pred HHhhccc
Confidence 8887654
No 10
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=95.19 E-value=0.17 Score=47.22 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=27.7
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
...+|.|.|||.+.++ +.|+++|++. +.|.++.++.
T Consensus 33 ~~~~lfVgnL~~~~te---~~L~~~F~~~--G~I~~v~i~~ 68 (144)
T PLN03134 33 MSTKLFIGGLSWGTDD---ASLRDAFAHF--GDVVDAKVIV 68 (144)
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHhcC--CCeEEEEEEe
Confidence 4568999999998876 7889999876 5666666543
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=94.97 E-value=0.18 Score=58.15 Aligned_cols=165 Identities=16% Similarity=0.164 Sum_probs=84.6
Q ss_pred EEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHH------HHHHHHHHHHHHHHhhhhh--ccC-----
Q 005776 203 TVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAK------LVKKKKKLQNWLDYYQLKY--SRN----- 269 (677)
Q Consensus 203 TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~------L~~~r~~~~~~le~~~~k~--~~~----- 269 (677)
||.|.|||.+.+| +.|+++|++. |.|.+|.+++|...-.. -....+.+++.++....+. .+.
T Consensus 2 sl~VgnLp~~vte---~~L~~~F~~~--G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~ 76 (562)
T TIGR01628 2 SLYVGDLDPDVTE---AKLYDLFKPF--GPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMW 76 (562)
T ss_pred eEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeec
Confidence 7999999998876 7888999887 56889999887541100 0122333333333221110 000
Q ss_pred CCCCCcccc-c----cccCCCcccCHHHHHHHHHHHHHHH---HHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhc
Q 005776 270 NSKRPMMKT-G----FLGLWGEKVDGIDYHISEIEKLSKE---IAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQ 341 (677)
Q Consensus 270 ~~~rp~~r~-~----~~~~~g~kvDai~~~~~~l~~l~~~---I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~ 341 (677)
..+.|..+. + +.+-..+.+| ++++.++=++ |...+-....+.+ ..|.|||.|.++++|..|.+.+.
T Consensus 77 s~~~~~~~~~~~~~vfV~nLp~~~~-----~~~L~~~F~~~G~i~~~~i~~~~~g~-skg~afV~F~~~e~A~~Ai~~ln 150 (562)
T TIGR01628 77 SQRDPSLRRSGVGNIFVKNLDKSVD-----NKALFDTFSKFGNILSCKVATDENGK-SRGYGFVHFEKEESAKAAIQKVN 150 (562)
T ss_pred ccccccccccCCCceEEcCCCccCC-----HHHHHHHHHhcCCcceeEeeecCCCC-cccEEEEEECCHHHHHHHHHHhc
Confidence 001121111 1 0011123333 2223322221 1111100011111 45899999999999999988764
Q ss_pred CC--CCCcceee-----------eCCCCCCeeecccccchhHHHHHHHHH
Q 005776 342 TR--NPTLWLTE-----------WASEPRDVYWQNLAIPYVSLSVRRLIM 378 (677)
Q Consensus 342 ~~--~~~~~~v~-----------~AP~P~DIiW~NL~~~~~~r~~R~~~~ 378 (677)
.. +...+.+. ..+..+.|.-.||..+..+..++.++.
T Consensus 151 g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~ 200 (562)
T TIGR01628 151 GMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFA 200 (562)
T ss_pred ccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHH
Confidence 32 11122221 223345588889988887777777654
No 12
>PLN03120 nucleic acid binding protein; Provisional
Probab=94.89 E-value=0.15 Score=51.61 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=27.0
Q ss_pred ceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEE
Q 005776 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (677)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (677)
.+||.|.|||.+.++ +.|++||+.. |.|.++.+.
T Consensus 4 ~rtVfVgNLs~~tTE---~dLrefFS~~--G~I~~V~I~ 37 (260)
T PLN03120 4 VRTVKVSNVSLKATE---RDIKEFFSFS--GDIEYVEMQ 37 (260)
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEe
Confidence 579999999998776 7899999876 666666543
No 13
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=94.81 E-value=0.21 Score=53.78 Aligned_cols=101 Identities=11% Similarity=0.158 Sum_probs=71.3
Q ss_pred ceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcccccc
Q 005776 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKTGF 280 (677)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r~~~ 280 (677)
..+|+|.|||.+.+| +.|+++|++. |.|.++.+++|-.
T Consensus 3 ~~~l~V~nLp~~~~e---~~l~~~F~~~--G~i~~v~i~~d~~------------------------------------- 40 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQ---EEIRSLFTSI--GEIESCKLVRDKV------------------------------------- 40 (352)
T ss_pred CcEEEEeCCCCCCCH---HHHHHHHHcc--CCEEEEEEEEcCC-------------------------------------
Confidence 469999999998876 7899999987 5677777665410
Q ss_pred ccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC----
Q 005776 281 LGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS---- 354 (677)
Q Consensus 281 ~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP---- 354 (677)
+ .. ..|+|||+|.+.++|..|...+... ....+.++.|-
T Consensus 41 --------~------------------------g~---s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~ 85 (352)
T TIGR01661 41 --------T------------------------GQ---SLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSD 85 (352)
T ss_pred --------C------------------------Cc---cceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccccc
Confidence 0 00 2489999999999999999876543 23345565553
Q ss_pred --CCCCeeecccccchhHHHHHHHHH
Q 005776 355 --EPRDVYWQNLAIPYVSLSVRRLIM 378 (677)
Q Consensus 355 --~P~DIiW~NL~~~~~~r~~R~~~~ 378 (677)
....|.-.||..+..+.-++.++.
T Consensus 86 ~~~~~~l~v~~l~~~~~~~~l~~~f~ 111 (352)
T TIGR01661 86 SIKGANLYVSGLPKTMTQHELESIFS 111 (352)
T ss_pred ccccceEEECCccccCCHHHHHHHHh
Confidence 233578888887777776666543
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=94.31 E-value=0.15 Score=58.08 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=31.8
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecch
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNAN 243 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~ 243 (677)
...+|.|.|||.+.+| +.|++.|++. |.|.++.+++|..
T Consensus 57 ~~~~lFVgnLp~~~tE---d~L~~~F~~~--G~I~~vrl~~D~s 95 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYE---DELVPLFEKA--GPIYELRLMMDFS 95 (578)
T ss_pred CCCEEEeCCCCCCCCH---HHHHHHHHhh--CCEEEEEEEECCC
Confidence 4589999999999876 7888899886 6777888888743
No 15
>PLN03121 nucleic acid binding protein; Provisional
Probab=94.27 E-value=0.28 Score=49.00 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=28.5
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEE
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (677)
+.-|||.|+||+.+.++ +.|++||+.. |.|.++.+.
T Consensus 3 ~~g~TV~V~NLS~~tTE---~dLrefFS~~--G~I~~V~I~ 38 (243)
T PLN03121 3 PGGYTAEVTNLSPKATE---KDVYDFFSHC--GAIEHVEII 38 (243)
T ss_pred CCceEEEEecCCCCCCH---HHHHHHHHhc--CCeEEEEEe
Confidence 34589999999998876 7899999876 666666554
No 16
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=93.66 E-value=0.38 Score=51.72 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=28.1
Q ss_pred ceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEec
Q 005776 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (677)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~ 241 (677)
.++|.|.|||.+.++ +.|+++|+.+ |.|.++.+++|
T Consensus 269 ~~~lfV~NL~~~~~e---~~L~~~F~~f--G~v~~v~i~~d 304 (352)
T TIGR01661 269 GYCIFVYNLSPDTDE---TVLWQLFGPF--GAVQNVKIIRD 304 (352)
T ss_pred CcEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEeEc
Confidence 357999999998876 7888999876 56777776654
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=93.27 E-value=0.38 Score=38.30 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=20.1
Q ss_pred CCCeEEEEecCHHHHHHHHHhhc
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQ 341 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~ 341 (677)
..+.|||+|.|+++|..|.+...
T Consensus 38 ~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 38 SRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCEEEEEeCCHHHHHHHHHHCC
Confidence 45899999999999999998754
No 18
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=91.49 E-value=0.76 Score=45.65 Aligned_cols=34 Identities=29% Similarity=0.271 Sum_probs=25.3
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCCCCCc--ceeeeC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTRNPTL--WLTEWA 353 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~~~~~--~~v~~A 353 (677)
-|-|||||.+.++|+.|...+....-.+ ++|+.+
T Consensus 231 kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 231 KGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred cceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4899999999999999988876553333 345543
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=91.48 E-value=0.72 Score=53.17 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=29.5
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecc
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNA 242 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~ 242 (677)
....+|.|.|+|.+.++ +.|+++|+++ |.+.++.+..|.
T Consensus 176 ~~~~~l~V~nl~~~~te---e~L~~~F~~f--G~i~~~~i~~~~ 214 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNE---DKLRELFAKF--GEITSAAVMKDG 214 (562)
T ss_pred cCCCeEEEeCCCCcCCH---HHHHHHHHhc--CCEEEEEEEECC
Confidence 34568999999998875 7788898876 566777666553
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=91.44 E-value=0.87 Score=52.05 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=27.5
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 356 (677)
+.|||+|++.++|..|.+.+... ....++|+.|.++
T Consensus 270 gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 270 DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 47999999999999999876544 3455677777544
No 21
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=90.81 E-value=0.63 Score=45.98 Aligned_cols=35 Identities=11% Similarity=0.232 Sum_probs=25.5
Q ss_pred eEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEec
Q 005776 202 FTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (677)
Q Consensus 202 ~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~ 241 (677)
.-|.|-|+|=++. +|.+++||+++ |++++++++-|
T Consensus 13 TKifVggL~w~T~---~~~l~~yFeqf--GeI~eavvitd 47 (247)
T KOG0149|consen 13 TKIFVGGLAWETH---KETLRRYFEQF--GEIVEAVVITD 47 (247)
T ss_pred EEEEEcCcccccc---hHHHHHHHHHh--CceEEEEEEec
Confidence 3588999998665 47889999887 66666665543
No 22
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=90.78 E-value=1.1 Score=46.27 Aligned_cols=48 Identities=13% Similarity=0.005 Sum_probs=33.6
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeee----------CCCCCCeeecccccch
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEW----------ASEPRDVYWQNLAIPY 368 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~----------AP~P~DIiW~NL~~~~ 368 (677)
|-+||||++..+|..|.+.++.. ...+..|.. -|-|.-.-|.++....
T Consensus 137 GFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n~K~~v~p~~~g~~~~~a~~ 196 (376)
T KOG0125|consen 137 GFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHNKKKKVLPYPNGWKLLPAVG 196 (376)
T ss_pred ccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhccCCcccCCCccccccccchh
Confidence 89999999999999999998754 222222222 2556666788876554
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=88.93 E-value=1.4 Score=50.52 Aligned_cols=45 Identities=11% Similarity=0.058 Sum_probs=33.8
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCCCCeeecc
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQN 363 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DIiW~N 363 (677)
..|.|||.|++..+|..|.+.+... ....++|..|..|.|=.|..
T Consensus 245 sKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~~~p 291 (612)
T TIGR01645 245 HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQP 291 (612)
T ss_pred cCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccccCCC
Confidence 4589999999999999999877644 34567777776666655643
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=88.46 E-value=2.4 Score=47.45 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=30.4
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEec
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~ 241 (677)
..+||.|.|||.+.++ +.|+++|++. |.|.++.++.|
T Consensus 88 ~~~~l~V~nlp~~~~~---~~l~~~F~~~--G~v~~v~i~~d 124 (457)
T TIGR01622 88 DDRTVFVLQLALKARE---RDLYEFFSKV--GKVRDVQCIKD 124 (457)
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEeec
Confidence 4689999999998775 6788999886 57788888765
No 25
>KOG2514 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.42 E-value=4.1 Score=47.48 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhhHHHHHHHH
Q 005776 429 LPGIALKLFLIFLPTILMIMSKFEGFISLSSLERRAATRYYLFNFVNVFL 478 (677)
Q Consensus 429 lP~l~l~i~~~llp~il~~ls~~eg~~T~S~~~~s~~~k~f~f~~vn~~l 478 (677)
+-.+++.++|.+---+-.+++..|.+.|.|+.|-|..-|.|+||++|...
T Consensus 439 in~~~i~~L~~iy~~~a~~lt~~e~prTe~~~ensl~~KiflfqfvN~ys 488 (861)
T KOG2514|consen 439 INLVVIMILNAIYSNLASRLTNLENPRTESEFENSLILKIFLFQFVNYYS 488 (861)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhhcCccchhhhcchhHHHHHHHHHHHhcC
Confidence 34445556666777778889999999999999999999999999999753
No 26
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=86.69 E-value=1.5 Score=47.28 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=28.8
Q ss_pred CCCCeEEEEecCHHHHHHHHHhhcCCCCCc----ceeeeC
Q 005776 318 AIMPAAFVSFNSRWGAAVCAQTQQTRNPTL----WLTEWA 353 (677)
Q Consensus 318 ~~~~~AFVtF~s~~~a~~~~q~~~~~~~~~----~~v~~A 353 (677)
+..|-|||.+.|-++|.++.|.+.+++-.- ..|++|
T Consensus 206 KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWA 245 (506)
T KOG0117|consen 206 KNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWA 245 (506)
T ss_pred cccceEEEEeecchhHHHHHhhccCCceeecCCcceeecc
Confidence 367999999999999999999988776433 356665
No 27
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=86.12 E-value=2.8 Score=46.27 Aligned_cols=33 Identities=33% Similarity=0.347 Sum_probs=25.0
Q ss_pred eEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEE
Q 005776 202 FTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (677)
Q Consensus 202 ~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (677)
+||.|+|+|=|..+ +.|.++|+++ |.+..+.+|
T Consensus 293 ~tVFvRNL~fD~tE---Eel~~~fskF--G~v~ya~iV 325 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTE---EELKEHFSKF--GEVKYAIIV 325 (678)
T ss_pred ceEEEecCCccccH---HHHHHHHHhh--ccceeEEEE
Confidence 89999999998775 7888888887 444444444
No 28
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=85.20 E-value=7.8 Score=38.91 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=76.9
Q ss_pred eEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHH-------H--HHHHHHHHHHHHH--hhhhhccCC
Q 005776 202 FTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAK-------L--VKKKKKLQNWLDY--YQLKYSRNN 270 (677)
Q Consensus 202 ~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~-------L--~~~r~~~~~~le~--~~~k~~~~~ 270 (677)
.-+.|.-+|....+ |+++..|... |+++++.+++|--.=+. . -+..+++.+.+.- ++.|.-|-.
T Consensus 42 TNLIvNYLPQ~MTq---dE~rSLF~Si--GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQ---DELRSLFGSI--GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred ceeeeeecccccCH---HHHHHHhhcc--cceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 45677788998765 7899998765 77888888887431111 0 1223344444432 223321212
Q ss_pred CCCCcc---ccccccCCC-cccCHHHHHHHHHHHHHHHHHHHH-HhhcCCC--CCCCCeEEEEecCHHHHHHHHHhhcCC
Q 005776 271 SKRPMM---KTGFLGLWG-EKVDGIDYHISEIEKLSKEIAEER-ERVVSDP--KAIMPAAFVSFNSRWGAAVCAQTQQTR 343 (677)
Q Consensus 271 ~~rp~~---r~~~~~~~g-~kvDai~~~~~~l~~l~~~I~~~r-~~~~~~~--~~~~~~AFVtF~s~~~a~~~~q~~~~~ 343 (677)
-.||.. |..-+-..| .|. .-.+|++++-...-+.- +++..+. ....|.+||.|+...+|..|...+..+
T Consensus 117 yARPSs~~Ik~aNLYvSGlPkt----MtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~ 192 (360)
T KOG0145|consen 117 YARPSSDSIKDANLYVSGLPKT----MTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ 192 (360)
T ss_pred eccCChhhhcccceEEecCCcc----chHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCC
Confidence 236632 211000011 111 12345555444322211 1111111 114589999999999999999999888
Q ss_pred CCCc----ceeeeCCCC
Q 005776 344 NPTL----WLTEWASEP 356 (677)
Q Consensus 344 ~~~~----~~v~~AP~P 356 (677)
+|.. ..|+.|-.|
T Consensus 193 ~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 193 KPSGCTEPITVKFANNP 209 (360)
T ss_pred CCCCCCCCeEEEecCCc
Confidence 7754 345555555
No 29
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=84.76 E-value=8.4 Score=43.47 Aligned_cols=35 Identities=9% Similarity=0.096 Sum_probs=25.2
Q ss_pred cceEEEEecCCC-CCcccHHHHHHHhhhhcCCCceeEEEEE
Q 005776 200 DQFTVLVRNVPP-DPDESVSELVEHFFLVNHPNHYLTHQVV 239 (677)
Q Consensus 200 ~~~TVlV~~IP~-~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (677)
...+|+|.|+|. ..++ +.|++.|+++ |.|.++.+.
T Consensus 274 ~~~~l~v~nL~~~~vt~---~~L~~lF~~y--G~V~~vki~ 309 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNC---DRLFNLFCVY--GNVERVKFM 309 (481)
T ss_pred CCCEEEEeCCCCCCCCH---HHHHHHHHhc--CCeEEEEEE
Confidence 457999999997 4554 6788888876 566555443
No 30
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=84.56 E-value=1.5 Score=33.26 Aligned_cols=24 Identities=29% Similarity=0.206 Sum_probs=20.9
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR 343 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~ 343 (677)
.+.|||+|.+.++|..|.+.+...
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~ 44 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGR 44 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 489999999999999999877543
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=83.33 E-value=6.3 Score=44.70 Aligned_cols=37 Identities=8% Similarity=0.172 Sum_probs=28.0
Q ss_pred ceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecc
Q 005776 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNA 242 (677)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~ 242 (677)
.++|.|.|||...++ +.|+++|+.+ |.+..+.++.|.
T Consensus 295 ~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~~~~~~~~ 331 (509)
T TIGR01642 295 KDRIYIGNLPLYLGE---DQIKELLESF--GDLKAFNLIKDI 331 (509)
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEecC
Confidence 479999999998775 6788888876 456666666653
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=82.99 E-value=2 Score=43.41 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=61.1
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccccc
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKTG 279 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r~~ 279 (677)
..||+.|-|+.++..| +.|...|.+. |.|.+..+++| ++........ ...+.|+.+..
T Consensus 5 ~prtlyvgnld~~vte---~~i~~lf~qi--g~v~~~k~i~~----------------e~~v~wa~~p-~nQsk~t~~~h 62 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTE---DFIATLFNQI--GSVTKTKVIFD----------------ELKVNWATAP-GNQSKPTSNQH 62 (321)
T ss_pred CCceEEeeccChhhHH---HHHHHHHHhc--cccccceeehh----------------hhccccccCc-ccCCCCccccc
Confidence 3589999999987765 6777888877 55666666665 1111110000 11234554443
Q ss_pred cccCCCcccCHHHHHHHHHHHHHH---HHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhh
Q 005776 280 FLGLWGEKVDGIDYHISEIEKLSK---EIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQ 340 (677)
Q Consensus 280 ~~~~~g~kvDai~~~~~~l~~l~~---~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~ 340 (677)
+.-..|.-+..|++ ++|++.-. +|.+.|--.+....+..|++||+|-+..+|..|.|..
T Consensus 63 fhvfvgdls~eI~~--e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDN--EKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred eeEEehhcchhcch--HHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 22122322222322 23333221 1222221001111124699999999999999998764
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=81.84 E-value=9.7 Score=43.00 Aligned_cols=31 Identities=23% Similarity=0.096 Sum_probs=23.4
Q ss_pred ceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEE
Q 005776 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTH 236 (677)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v 236 (677)
++||.|.|||.+.++ +.|++.|+.+ |.|.++
T Consensus 2 s~vv~V~nLp~~~te---~~L~~~f~~f--G~V~~v 32 (481)
T TIGR01649 2 SPVVHVRNLPQDVVE---ADLVEALIPF--GPVSYV 32 (481)
T ss_pred ccEEEEcCCCCCCCH---HHHHHHHHhc--CCeeEE
Confidence 579999999998876 6788888776 444443
No 34
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=78.01 E-value=4.9 Score=43.95 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.8
Q ss_pred CCCeEEEEecCHHHHHHHHHhhc
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQ 341 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~ 341 (677)
+++-|||.|.++.+|+.|+|...
T Consensus 144 ~tGEAfVqF~sqe~ae~Al~rhr 166 (510)
T KOG4211|consen 144 PTGEAFVQFESQESAEIALGRHR 166 (510)
T ss_pred cccceEEEecCHHHHHHHHHHHH
Confidence 68999999999999999998653
No 35
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=73.25 E-value=5.3 Score=31.14 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=24.0
Q ss_pred EEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 204 VLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 204 VlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
|.|.|||.+.++ +.|+++|++. |.+..+.+..
T Consensus 1 l~v~nlp~~~t~---~~l~~~f~~~--g~i~~~~~~~ 32 (70)
T PF00076_consen 1 LYVGNLPPDVTE---EELRDFFSQF--GKIESIKVMR 32 (70)
T ss_dssp EEEESETTTSSH---HHHHHHHHTT--STEEEEEEEE
T ss_pred cEEcCCCCcCCH---HHHHHHHHHh--hhcccccccc
Confidence 689999998876 7888999886 4555555543
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=73.23 E-value=5 Score=39.59 Aligned_cols=44 Identities=20% Similarity=0.164 Sum_probs=34.3
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCCCCeeec
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQ 362 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DIiW~ 362 (677)
..|.|||+|++..+|..|...++.- -...++++.|-+++||+=.
T Consensus 51 mRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~ 96 (221)
T KOG4206|consen 51 MRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQ 96 (221)
T ss_pred ccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhc
Confidence 6799999999999998887766543 2345678888888888755
No 37
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=72.04 E-value=9.1 Score=43.36 Aligned_cols=35 Identities=11% Similarity=0.058 Sum_probs=26.4
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCCC--CCcceeeeC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTRN--PTLWLTEWA 353 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~A 353 (677)
..|.|||+|.+..+|..|.+.+.... ...+.|+.|
T Consensus 336 ~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 336 SKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred cCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 46899999999999999998775442 334556655
No 38
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=70.68 E-value=9.5 Score=41.04 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=40.3
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC-C-----CCCCeeecccccchhHHHHHHHH
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA-S-----EPRDVYWQNLAIPYVSLSVRRLI 377 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A-P-----~P~DIiW~NL~~~~~~r~~R~~~ 377 (677)
..++|||+|.++++|..|.+.+... ....+.++.| | ....|.-.||..+..+.-+|.++
T Consensus 148 srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F 214 (346)
T TIGR01659 148 SFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIF 214 (346)
T ss_pred cCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHH
Confidence 3489999999999999999876543 2344556554 2 23347777887776666666544
No 39
>smart00361 RRM_1 RNA recognition motif.
Probab=70.16 E-value=4.8 Score=32.16 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=21.5
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR 343 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~ 343 (677)
..|.|||+|++..+|..|.+.+...
T Consensus 36 ~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 36 KRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3589999999999999999877654
No 40
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=68.74 E-value=6.2 Score=40.37 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=27.8
Q ss_pred EEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecch
Q 005776 204 VLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNAN 243 (677)
Q Consensus 204 VlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~ 243 (677)
+.|-|+|...++ .+++..|+++ |+|.+.-|+.|.+
T Consensus 5 LFIGNLp~~~~~---~elr~lFe~y--gkVlECDIvKNYg 39 (346)
T KOG0109|consen 5 LFIGNLPREATE---QELRSLFEQY--GKVLECDIVKNYG 39 (346)
T ss_pred hhccCCCcccch---HHHHHHHHhh--CceEeeeeecccc
Confidence 568899987765 6788888887 7888888888876
No 41
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=67.76 E-value=5.1 Score=38.03 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=28.2
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCCC--CCcceeee
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTRN--PTLWLTEW 352 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~ 352 (677)
+-|.|||+|++..+|.-|...+..++ ...+.|++
T Consensus 46 PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 46 PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred CCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 45999999999999999999887665 45677776
No 42
>PF07810 TMC: TMC domain; InterPro: IPR012496 These sequences are similar to a region conserved amongst various protein products of the transmembrane channel-like (TMC) gene family, such as Transmembrane channel-like protein 3 (Q7TN63 from SWISSPROT) and EVIN2 (Q8IU68 from SWISSPROT) - this region is termed the TMC domain []. Mutations in these genes are implicated in a number of human conditions, such as deafness and epidermodysplasia verruciformis []. TMC proteins are thought to have important cellular roles, and may be modifiers of ion channels or transporters []. ; GO: 0016021 integral to membrane
Probab=67.47 E-value=55 Score=29.01 Aligned_cols=55 Identities=7% Similarity=0.097 Sum_probs=40.5
Q ss_pred cCCCCCCCccchh---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhheeEeecC
Q 005776 559 MDPGSLGFNSGEP---RIQFYFLLGLVYATVTPLLLPFIIVFFALAYVVFRHQVKSQFFDY 616 (677)
Q Consensus 559 ~~~~~f~~g~~y~---~~l~i~~i~l~Ys~i~Plil~~~~~~f~~~y~v~Ky~ll~vy~~~ 616 (677)
...++|+.+...= ....+..+|++|||+.|+ ++++-+++.+++-|+.+++.+.+.
T Consensus 47 ~g~~eF~i~~nvL~liY~Qtl~WiG~ffsPlLP~---i~~ik~~i~FYvKk~sll~~c~p~ 104 (111)
T PF07810_consen 47 PGKPEFDIPKNVLDLIYNQTLVWIGMFFSPLLPA---INVIKLFILFYVKKFSLLYNCQPP 104 (111)
T ss_pred CCCCCccHhhhHHHHHHcchhhhhhHHhchhHHH---HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4567888876542 233467889888888877 566777888889999998888763
No 43
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=66.70 E-value=16 Score=40.29 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=26.8
Q ss_pred eEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEec
Q 005776 202 FTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (677)
Q Consensus 202 ~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~ 241 (677)
++|.|.|||.+..| |.|...|++. |.|.++.+++|
T Consensus 19 ~~v~vgnip~~~se---~~l~~~~~~~--g~v~s~~~v~D 53 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSE---EQLLSIFSGV--GPVLSFRLVYD 53 (435)
T ss_pred cceEecCCCCcccH---HHHHHHHhcc--Cccceeeeccc
Confidence 89999999998765 7788888766 55666666654
No 44
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=66.10 E-value=9.5 Score=32.91 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=18.4
Q ss_pred CCeEEEEecCHHHHHHHHHhhcC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQT 342 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~ 342 (677)
.|+|||-|.+..+|....+..+.
T Consensus 45 ~GYAFVNf~~~~~~~~F~~~f~g 67 (97)
T PF04059_consen 45 LGYAFVNFTSPQAAIRFYKAFNG 67 (97)
T ss_pred eEEEEEEcCCHHHHHHHHHHHcC
Confidence 58888888888888888777654
No 45
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=65.39 E-value=6.2 Score=30.71 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.2
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQT 342 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~ 342 (677)
..+.|||+|++.++|..|.+.+..
T Consensus 38 ~~~~a~V~F~~~~~a~~a~~~l~g 61 (70)
T PF00076_consen 38 SKGYAFVEFESEEDAEKALEELNG 61 (70)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ccceEEEEEcCHHHHHHHHHHcCC
Confidence 568999999999999999987654
No 46
>smart00362 RRM_2 RNA recognition motif.
Probab=64.54 E-value=9.4 Score=29.20 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=18.3
Q ss_pred CCeEEEEecCHHHHHHHHHhhc
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQ 341 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~ 341 (677)
.+.|||+|++..+|+.|.+.+.
T Consensus 39 ~~~~~v~f~~~~~a~~a~~~~~ 60 (72)
T smart00362 39 KGFAFVEFESEEDAEKAIEALN 60 (72)
T ss_pred CceEEEEeCCHHHHHHHHHHhC
Confidence 3789999999999998887654
No 47
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=58.90 E-value=2.6 Score=35.53 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=22.2
Q ss_pred CCcceEEEEecCCCCCcc-cHHHHHHHhhhhc
Q 005776 198 RPDQFTVLVRNVPPDPDE-SVSELVEHFFLVN 228 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~-~~~~~l~~~f~~~ 228 (677)
..+.+||+|+|||...++ .+.|.++-+|++-
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~LeIhFqK~ 80 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLEIHFQKP 80 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEEEEEecC
Confidence 357899999999995544 4556666667653
No 48
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=58.42 E-value=16 Score=39.72 Aligned_cols=84 Identities=14% Similarity=0.008 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHH---HHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC---CCCcceeeeCCCCCCeeeccccc
Q 005776 293 YHISEIEKLSKEIA---EERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR---NPTLWLTEWASEPRDVYWQNLAI 366 (677)
Q Consensus 293 ~~~~~l~~l~~~I~---~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~---~~~~~~v~~AP~P~DIiW~NL~~ 366 (677)
-++++|.-+-++|- +.|--.+...-...|+|||||.+...|+.|...+.+. ....+.|...-.-.-..=.|+-.
T Consensus 95 ~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK 174 (506)
T KOG0117|consen 95 VFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPK 174 (506)
T ss_pred ccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCc
Confidence 46777777766543 3332211111114699999999999999999988765 22333333333344556666666
Q ss_pred chhHHHHHHH
Q 005776 367 PYVSLSVRRL 376 (677)
Q Consensus 367 ~~~~r~~R~~ 376 (677)
++.+--++.-
T Consensus 175 ~k~keeIlee 184 (506)
T KOG0117|consen 175 TKKKEEILEE 184 (506)
T ss_pred cccHHHHHHH
Confidence 6655444443
No 49
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=56.33 E-value=19 Score=36.44 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=38.1
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCCCC-----CcceeeeCCCCCCeeecccccchhHHHHHHHHHH
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTRNP-----TLWLTEWASEPRDVYWQNLAIPYVSLSVRRLIMG 379 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~~~-----~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~ 379 (677)
..|+|||-|++..+||++...++.++. ..+.|+.| -+.+||..||.--.
T Consensus 59 sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A------------DTdkER~lRRMQQm 112 (371)
T KOG0146|consen 59 SKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA------------DTDKERTLRRMQQM 112 (371)
T ss_pred CCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec------------cchHHHHHHHHHHH
Confidence 459999999999999999999987642 45666665 35688999887543
No 50
>smart00360 RRM RNA recognition motif.
Probab=56.15 E-value=14 Score=28.10 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=20.0
Q ss_pred CCCeEEEEecCHHHHHHHHHhhc
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQ 341 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~ 341 (677)
..+.|||+|++..+|..|.+.+.
T Consensus 37 ~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 37 SKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCceEEEEeCCHHHHHHHHHHcC
Confidence 46899999999999999987665
No 51
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=55.94 E-value=17 Score=27.80 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=19.9
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR 343 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~ 343 (677)
.+.|||+|++.++|+.|.+.....
T Consensus 40 ~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 40 KGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred ceEEEEEECCHHHHHHHHHHhCCC
Confidence 489999999999999998875543
No 52
>smart00362 RRM_2 RNA recognition motif.
Probab=54.64 E-value=15 Score=28.00 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=18.3
Q ss_pred EEEEecCCCCCcccHHHHHHHhhhhc
Q 005776 203 TVLVRNVPPDPDESVSELVEHFFLVN 228 (677)
Q Consensus 203 TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (677)
||.|+|+|.+.++ +.++++|++.
T Consensus 1 ~v~i~~l~~~~~~---~~l~~~~~~~ 23 (72)
T smart00362 1 TLFVGNLPPDVTE---EDLKELFSKF 23 (72)
T ss_pred CEEEcCCCCcCCH---HHHHHHHHhc
Confidence 6899999997764 6788888766
No 53
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=52.74 E-value=23 Score=27.14 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=22.1
Q ss_pred EEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEE
Q 005776 203 TVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (677)
Q Consensus 203 TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 238 (677)
+|.|+|+|.+.++ +.++++|+.. |.+.++.+
T Consensus 1 ~i~i~~l~~~~~~---~~i~~~~~~~--g~i~~~~~ 31 (74)
T cd00590 1 TLFVGNLPPDVTE---EDLRELFSKF--GKVESVRI 31 (74)
T ss_pred CEEEeCCCCccCH---HHHHHHHHhc--CCEEEEEE
Confidence 5889999998764 6788888775 44444443
No 54
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=48.76 E-value=6.7 Score=41.29 Aligned_cols=152 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecch----------------hHHHHHHHHHH-----HHHH
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNAN----------------KLAKLVKKKKK-----LQNW 258 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~----------------~L~~L~~~r~~-----~~~~ 258 (677)
++..+.|.+|+-++++ |.+++||.+. ++|.++.+.+|.. ........+.. ..+-
T Consensus 5 ~~~KlfiGgisw~tte---e~Lr~yf~~~--Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTE---ESLREYFSQF--GEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEP 79 (311)
T ss_pred CCcceeecCcCccccH---HHHHHHhccc--CceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccc
Q ss_pred HHHhhhhhccCCCCCCccccccccCCCcccCH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHH
Q 005776 259 LDYYQLKYSRNNSKRPMMKTGFLGLWGEKVDG-IDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCA 337 (677)
Q Consensus 259 le~~~~k~~~~~~~rp~~r~~~~~~~g~kvDa-i~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~ 337 (677)
.+.............+..+.-+.+ |-+.|. .+.+++..++.- .|.......+.+.....+-+||+|+++.+...+.
T Consensus 80 k~av~r~~~~~~~~~~~tkkiFvG--G~~~~~~e~~~r~yfe~~g-~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~ 156 (311)
T KOG4205|consen 80 KRAVSREDQTKVGRHLRTKKIFVG--GLPPDTTEEDFKDYFEQFG-KVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT 156 (311)
T ss_pred eeccCcccccccccccceeEEEec--CcCCCCchHHHhhhhhccc-eeEeeEEeecccccccccceeeEeccccccceec
Q ss_pred -HhhcCCCCCcceeeeCCCCCCee
Q 005776 338 -QTQQTRNPTLWLTEWASEPRDVY 360 (677)
Q Consensus 338 -q~~~~~~~~~~~v~~AP~P~DIi 360 (677)
|..+.-+.....|..| .|+|+.
T Consensus 157 ~~~f~~~~gk~vevkrA-~pk~~~ 179 (311)
T KOG4205|consen 157 LQKFHDFNGKKVEVKRA-IPKEVM 179 (311)
T ss_pred ccceeeecCceeeEeec-cchhhc
No 55
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=43.25 E-value=37 Score=33.61 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=20.6
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQT 342 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~ 342 (677)
+.+.|||||.|...|..|...+..
T Consensus 76 ~~pvaFatF~s~q~A~aamnaLNG 99 (284)
T KOG1457|consen 76 CKPVAFATFTSHQFALAAMNALNG 99 (284)
T ss_pred ccceEEEEecchHHHHHHHHHhcC
Confidence 458999999999999999887653
No 56
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=40.13 E-value=26 Score=34.25 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=19.8
Q ss_pred CCCeEEEEecCHHHHHHHHHhhc
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQ 341 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~ 341 (677)
.-|+|||.|++++.|.+|+.+..
T Consensus 91 SKgYAFVEFEs~eVA~IaAETMN 113 (214)
T KOG4208|consen 91 SKGYAFVEFESEEVAKIAAETMN 113 (214)
T ss_pred cCceEEEEeccHHHHHHHHHHhh
Confidence 34899999999999999987653
No 57
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=40.08 E-value=24 Score=31.76 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 005776 13 LNILGAFIFLIAFAILRLQ 31 (677)
Q Consensus 13 ~n~~~~~~~~~~F~~LR~~ 31 (677)
+.++++.++++.||+.|++
T Consensus 74 ~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4455667778889998875
No 58
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=39.31 E-value=1.9e+02 Score=31.06 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=21.7
Q ss_pred CCCCeEEEEecCHHHHHHHHHhhcC
Q 005776 318 AIMPAAFVSFNSRWGAAVCAQTQQT 342 (677)
Q Consensus 318 ~~~~~AFVtF~s~~~a~~~~q~~~~ 342 (677)
.++|-|||.|+++++|..|+|..+.
T Consensus 322 rPSGeAFIqm~nae~a~aaaqk~hk 346 (508)
T KOG1365|consen 322 RPSGEAFIQMRNAERARAAAQKCHK 346 (508)
T ss_pred CcChhhhhhhhhhHHHHHHHHHHHH
Confidence 3789999999999999999987543
No 59
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=38.67 E-value=70 Score=35.61 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=28.4
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCCC--CCcceeeeCCC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTRN--PTLWLTEWASE 355 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP~ 355 (677)
..|.|||.|++..+|..|.+.+.... .....+...|+
T Consensus 409 ~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 409 SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 46999999999999999999988764 33445555554
No 60
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=35.93 E-value=3.9e+02 Score=27.25 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=17.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhh
Q 005776 287 KVDGIDYHISEIEKLSKEIAEERERV 312 (677)
Q Consensus 287 kvDai~~~~~~l~~l~~~I~~~r~~~ 312 (677)
+++.+--.+++|.+++.+|++.+.+.
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~ 185 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQL 185 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566788888888888776543
No 61
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=33.29 E-value=34 Score=29.81 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.1
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQT 342 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~ 342 (677)
..|+|||++++..+|..|+..+..
T Consensus 56 TrGTAFVVYedi~dAk~A~dhlsg 79 (124)
T KOG0114|consen 56 TRGTAFVVYEDIFDAKKACDHLSG 79 (124)
T ss_pred cCceEEEEehHhhhHHHHHHHhcc
Confidence 579999999999999999887654
No 62
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=31.04 E-value=86 Score=26.35 Aligned_cols=40 Identities=10% Similarity=0.083 Sum_probs=24.2
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCCC--CCcceeeeCCCCCCe
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTRN--PTLWLTEWASEPRDV 359 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP~P~DI 359 (677)
.++|.|-|.+++.|..|..-..... ..+..|+..|.+.|.
T Consensus 39 ~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r~~ 80 (90)
T PF11608_consen 39 GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNREF 80 (90)
T ss_dssp TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S---
T ss_pred CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcccc
Confidence 4899999999999999977665433 456677777776654
No 63
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]
Probab=30.49 E-value=6.3e+02 Score=26.16 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005776 369 VSLSVRRLIMGVAFFFLTFFFMIPIAIVQ 397 (677)
Q Consensus 369 ~~r~~R~~~~~~~~~~l~i~~~iPv~~v~ 397 (677)
.++.+|..+..+..+++.+.+..|+-.+-
T Consensus 7 ~~~~l~~~l~yl~lii~~~iiifPl~~~v 35 (282)
T COG3833 7 KKRKLRLLLTYLLLIILAIIIIFPLLWVV 35 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888999976543
No 64
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=29.60 E-value=68 Score=34.92 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.4
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR 343 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~ 343 (677)
..|+|||+|.+.++|..|...++..
T Consensus 75 s~gcCFv~~~trk~a~~a~~Alhn~ 99 (510)
T KOG0144|consen 75 SKGCCFVKYYTRKEADEAINALHNQ 99 (510)
T ss_pred ccceEEEEeccHHHHHHHHHHhhcc
Confidence 4599999999999999998877654
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=27.62 E-value=5.8e+02 Score=24.80 Aligned_cols=147 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecch------------hHHHHHHHHHHHHHHHHHhh-
Q 005776 197 RRPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNAN------------KLAKLVKKKKKLQNWLDYYQ- 263 (677)
Q Consensus 197 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~------------~L~~L~~~r~~~~~~le~~~- 263 (677)
.+.++.||.|.|||....+ +.+.+.|-+. |.|+++++.+|-- .=++-.+-.-|+.+....|-
T Consensus 5 ~rnqd~tiyvgnld~kvs~---~~l~EL~iqa--gpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgr 79 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSE---ELLYELFIQA--GPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGR 79 (203)
T ss_pred ccCCCceEEEecCCHHHHH---HHHHHHHHhc--CceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCc
Q ss_pred ----hhhccCCCCCCccccccccCCCcccCHHHHHHHHHHHHHHHHHHHHH--hhcCCCC--CCCCeEEEEecCHHHHHH
Q 005776 264 ----LKYSRNNSKRPMMKTGFLGLWGEKVDGIDYHISEIEKLSKEIAEERE--RVVSDPK--AIMPAAFVSFNSRWGAAV 335 (677)
Q Consensus 264 ----~k~~~~~~~rp~~r~~~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~--~~~~~~~--~~~~~AFVtF~s~~~a~~ 335 (677)
+|.......-+....-+.+-.+..|| ++.+-+.....-..-+ ++..++. ..-|.|||.|.+.+.+..
T Consensus 80 pIrv~kas~~~~nl~vganlfvgNLd~~vD-----e~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ 154 (203)
T KOG0131|consen 80 PIRVNKASAHQKNLDVGANLFVGNLDPEVD-----EKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDA 154 (203)
T ss_pred eeEEEecccccccccccccccccccCcchh-----HHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHH
Q ss_pred HHHhhcCC--CCCcceeeeC
Q 005776 336 CAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 336 ~~q~~~~~--~~~~~~v~~A 353 (677)
|..+...+ ......++.|
T Consensus 155 ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 155 AIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred HHHHhccchhcCCceEEEEE
No 66
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=27.48 E-value=76 Score=31.54 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=26.6
Q ss_pred ceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEec
Q 005776 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (677)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~ 241 (677)
.+||.|.|||.+.++ +.+.++|.+.. .+.++.+.+|
T Consensus 115 ~~~l~v~nL~~~~~~---~~l~~~F~~~g--~~~~~~~~~d 150 (306)
T COG0724 115 NNTLFVGNLPYDVTE---EDLRELFKKFG--PVKRVRLVRD 150 (306)
T ss_pred CceEEEeCCCCCCCH---HHHHHHHHhcC--ceeEEEeeec
Confidence 489999999998775 78888998874 4445554443
No 67
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=27.11 E-value=62 Score=27.94 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=15.7
Q ss_pred eEEEEecCCCCCcc-cHHHHHHHh
Q 005776 202 FTVLVRNVPPDPDE-SVSELVEHF 224 (677)
Q Consensus 202 ~TVlV~~IP~~~~~-~~~~~l~~~ 224 (677)
.|||++|||...++ .+.+.+++.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~ 25 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEH 25 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHh
Confidence 59999999997654 344444443
No 68
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=27.03 E-value=7.5e+02 Score=25.89 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=15.0
Q ss_pred ccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 005776 567 NSGEPRIQFYFLLGLVYATVTPLLLPFIIVFFALAYVVFRH 607 (677)
Q Consensus 567 g~~y~~~l~i~~i~l~Ys~i~Plil~~~~~~f~~~y~v~Ky 607 (677)
...|+...-..+..++=+.+-=.+.|+.+ -+++.|+.-+|
T Consensus 242 ~f~~~~~ya~~l~v~~i~l~ys~i~Plil-~~~~~yf~l~y 281 (325)
T PF02714_consen 242 PFDYGYQYAQMLLVFFIGLFYSPIAPLIL-PFGLVYFLLKY 281 (325)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHH
Confidence 33444333333333333333333333333 23444444444
No 69
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.26 E-value=1e+02 Score=24.76 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=27.4
Q ss_pred CeEEEEecCHHHHHHHHHhhcCCCCCcceeeeCCCCCCe
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTRNPTLWLTEWASEPRDV 359 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~~~~~~~v~~AP~P~DI 359 (677)
....|||+|..+|-.+-+.+...+ ..++..|-|++|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~g---i~~~liP~P~~i 37 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNG---IPVRLIPTPREI 37 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCC---CcEEEeCCChhc
Confidence 468999999999988877765543 345677888877
No 70
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=26.18 E-value=99 Score=31.37 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=19.6
Q ss_pred CCCeEEEEecCHHHHHHHHHhhc
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQ 341 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~ 341 (677)
..|++||+|.+..++..|.....
T Consensus 231 SkgygfVSf~~pad~~rAmrem~ 253 (290)
T KOG0226|consen 231 SKGYGFVSFRDPADYVRAMREMN 253 (290)
T ss_pred cccceeeeecCHHHHHHHHHhhc
Confidence 56999999999999998877654
No 71
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=24.49 E-value=38 Score=32.52 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=17.8
Q ss_pred CCCeEEEEecCHHHHHHHHHh
Q 005776 319 IMPAAFVSFNSRWGAAVCAQT 339 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~ 339 (677)
+.+.|||.|++..+|.-|..-
T Consensus 44 ~ppfafVeFEd~RDAeDAiyg 64 (241)
T KOG0105|consen 44 PPPFAFVEFEDPRDAEDAIYG 64 (241)
T ss_pred CCCeeEEEecCccchhhhhhc
Confidence 468999999999999888643
No 72
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=23.16 E-value=1.9e+02 Score=20.36 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=20.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q 005776 3 TLADIGVSAALNILGAFIFLIAFAILRLQP 32 (677)
Q Consensus 3 ~~~~~~tsl~~n~~~~~~~~~~F~~LR~~~ 32 (677)
|+-++++++..-+++-.+++..|...|||+
T Consensus 4 s~IaIIv~V~vg~~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 4 STIAIIVAVVVGMAIIIICMFYYACCYKKH 33 (38)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344666676666666667777777777763
No 73
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=23.14 E-value=97 Score=35.97 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=30.7
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecc
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNA 242 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~ 242 (677)
..++|.|.|||.+.++ +.|+++|+.+ |.+.++.+.+|-
T Consensus 203 ~~~rLfVgnLp~~vte---edLk~lFs~F--G~I~svrl~~D~ 240 (612)
T TIGR01645 203 KFNRIYVASVHPDLSE---TDIKSVFEAF--GEIVKCQLARAP 240 (612)
T ss_pred ccceEEeecCCCCCCH---HHHHHHHhhc--CCeeEEEEEecC
Confidence 3479999999998876 7888999876 667788887764
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=22.94 E-value=1.1e+02 Score=35.61 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=26.6
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
.+|.|||.|.+..+|+.|.+.++.. +.+...++.++
T Consensus 559 SmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 559 SMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred ccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 4699999999999999999987632 34444444444
No 75
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=21.96 E-value=1.1e+02 Score=22.32 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 005776 293 YHISEIEKLSKEIAEERER 311 (677)
Q Consensus 293 ~~~~~l~~l~~~I~~~r~~ 311 (677)
..++++++++++|.+++++
T Consensus 16 ~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 16 NIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHH
Confidence 4468888888888887765
No 76
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=20.43 E-value=1.9e+02 Score=30.71 Aligned_cols=47 Identities=26% Similarity=0.278 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhhcCCC------CCCCCeEEEEecCHHHHHHHHHhhcCC
Q 005776 297 EIEKLSKEIAEERERVVSDP------KAIMPAAFVSFNSRWGAAVCAQTQQTR 343 (677)
Q Consensus 297 ~l~~l~~~I~~~r~~~~~~~------~~~~~~AFVtF~s~~~a~~~~q~~~~~ 343 (677)
-+.++++.+.++.++...-. ..+-|.|=|+|.+...|.+|.|.++.+
T Consensus 285 l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 285 LLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred HHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 36777778877777753210 125689999999999999999998754
Done!