Query 005776
Match_columns 677
No_of_seqs 234 out of 975
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 07:11:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnz_A Probable RNA-binding pr 97.1 0.0043 1.5E-07 51.7 11.3 83 199-358 3-87 (95)
2 4fxv_A ELAV-like protein 1; RN 97.1 0.0018 6.2E-08 55.0 8.8 78 199-353 17-96 (99)
3 2lkz_A RNA-binding protein 5; 97.0 0.0015 5.1E-08 55.1 7.6 38 198-238 6-43 (95)
4 2diu_A KIAA0430 protein; struc 96.9 0.0066 2.3E-07 50.7 10.0 40 321-360 47-88 (96)
5 2jrs_A RNA-binding protein 39; 96.9 0.0058 2E-07 52.6 10.2 84 198-358 23-108 (108)
6 3s8s_A Histone-lysine N-methyl 96.9 0.0039 1.3E-07 54.0 9.1 80 199-355 4-85 (110)
7 2lxi_A RNA-binding protein 10; 96.8 0.0017 5.7E-08 54.2 6.0 35 319-353 43-80 (91)
8 1x5s_A Cold-inducible RNA-bind 96.8 0.0065 2.2E-07 51.4 9.7 35 320-354 54-90 (102)
9 3mdf_A Peptidyl-prolyl CIS-tra 96.7 0.0063 2.2E-07 49.5 8.7 36 198-238 4-39 (85)
10 3p5t_L Cleavage and polyadenyl 96.7 0.003 1E-07 52.3 6.6 38 320-357 45-84 (90)
11 1whw_A Hypothetical protein ri 96.7 0.0089 3E-07 50.2 9.6 37 320-356 50-88 (99)
12 2dgs_A DAZ-associated protein 96.7 0.015 5.3E-07 48.8 11.1 37 198-239 7-43 (99)
13 1x5u_A Splicing factor 3B subu 96.7 0.011 3.8E-07 50.2 10.2 36 320-355 57-94 (105)
14 1fxl_A Paraneoplastic encephal 96.7 0.012 4E-07 54.1 11.1 58 320-377 44-109 (167)
15 3bs9_A Nucleolysin TIA-1 isofo 96.7 0.0072 2.5E-07 49.4 8.6 37 199-240 4-40 (87)
16 4a8x_A RNA-binding protein wit 96.6 0.0077 2.6E-07 49.3 8.7 37 320-356 47-85 (88)
17 1x5t_A Splicing factor 3B subu 96.6 0.0086 2.9E-07 50.0 8.9 35 320-354 48-84 (96)
18 2e5h_A Zinc finger CCHC-type a 96.6 0.0082 2.8E-07 49.9 8.7 37 198-239 13-49 (94)
19 2x1f_A MRNA 3'-END-processing 96.6 0.011 3.9E-07 49.3 9.4 37 320-356 44-82 (96)
20 4f25_A Polyadenylate-binding p 96.5 0.011 3.7E-07 51.4 9.6 36 200-240 4-39 (115)
21 3md1_A Nuclear and cytoplasmic 96.5 0.013 4.3E-07 47.4 9.3 35 320-354 43-79 (83)
22 2dgp_A Bruno-like 4, RNA bindi 96.5 0.016 5.3E-07 49.4 10.2 36 320-355 55-95 (106)
23 2cqi_A Nucleolysin TIAR; RNA r 96.5 0.016 5.5E-07 49.0 10.2 36 321-356 56-93 (103)
24 2cq3_A RNA-binding protein 9; 96.5 0.025 8.6E-07 47.8 11.4 80 198-356 12-93 (103)
25 1p27_B RNA-binding protein 8A; 96.5 0.016 5.5E-07 49.3 10.2 79 198-353 20-100 (106)
26 2cq0_A Eukaryotic translation 96.5 0.014 4.7E-07 49.5 9.6 80 198-354 12-93 (103)
27 2cpz_A CUG triplet repeat RNA- 96.5 0.01 3.5E-07 51.5 8.9 38 198-240 22-59 (115)
28 2dgv_A HnRNP M, heterogeneous 96.5 0.015 5.2E-07 48.0 9.6 37 320-356 48-86 (92)
29 2do4_A Squamous cell carcinoma 96.5 0.014 4.6E-07 49.2 9.3 80 198-355 14-95 (100)
30 2dnm_A SRP46 splicing factor; 96.5 0.015 5E-07 49.3 9.6 35 320-354 55-91 (103)
31 2dgo_A Cytotoxic granule-assoc 96.4 0.02 6.7E-07 49.6 10.5 38 198-240 12-49 (115)
32 2dnh_A Bruno-like 5, RNA bindi 96.4 0.024 8.2E-07 48.1 10.8 79 198-354 12-95 (105)
33 2fy1_A RNA-binding motif prote 96.4 0.022 7.4E-07 49.6 10.5 35 320-354 48-84 (116)
34 1b7f_A Protein (SXL-lethal pro 96.4 0.019 6.4E-07 52.9 10.5 58 320-377 45-110 (168)
35 2cqd_A RNA-binding region cont 96.3 0.018 6.1E-07 50.0 9.6 37 198-239 14-50 (116)
36 2cqc_A Arginine/serine-rich sp 96.3 0.012 4E-07 48.9 8.1 38 198-240 12-49 (95)
37 2khc_A Testis-specific RNP-typ 96.3 0.016 5.5E-07 50.4 9.3 36 198-238 37-72 (118)
38 2div_A TRNA selenocysteine ass 96.3 0.019 6.3E-07 48.2 9.4 38 198-240 6-44 (99)
39 1oo0_B CG8781-PA, drosophila Y 96.3 0.021 7E-07 49.0 9.8 34 320-353 68-103 (110)
40 1wi8_A EIF-4B, eukaryotic tran 96.3 0.026 8.8E-07 47.9 10.3 36 198-239 12-47 (104)
41 2cqg_A TDP-43, TAR DNA-binding 96.3 0.014 4.7E-07 49.5 8.5 37 199-240 13-49 (103)
42 2la6_A RNA-binding protein FUS 96.3 0.021 7.3E-07 47.9 9.6 34 320-353 63-98 (99)
43 2cph_A RNA binding motif prote 96.3 0.029 9.8E-07 47.7 10.5 38 319-356 57-97 (107)
44 3ucg_A Polyadenylate-binding p 96.3 0.019 6.5E-07 47.0 9.1 36 200-240 5-40 (89)
45 2d9p_A Polyadenylate-binding p 96.2 0.019 6.7E-07 48.5 9.2 78 198-354 12-91 (103)
46 2dhg_A TRNA selenocysteine ass 96.2 0.02 7E-07 48.4 9.3 38 198-240 6-44 (104)
47 2cqb_A Peptidyl-prolyl CIS-tra 96.2 0.011 3.9E-07 49.8 7.7 36 319-354 53-90 (102)
48 2ywk_A Putative RNA-binding pr 96.2 0.018 6.3E-07 47.8 8.8 38 198-240 13-50 (95)
49 3lqv_A PRE-mRNA branch site pr 96.2 0.022 7.6E-07 49.2 9.7 54 320-375 47-102 (115)
50 2a3j_A U1 small nuclear ribonu 96.2 0.021 7.3E-07 50.7 9.6 43 320-362 72-116 (127)
51 1h2v_Z 20 kDa nuclear CAP bind 96.2 0.022 7.5E-07 52.3 10.1 80 199-355 37-118 (156)
52 1x4h_A RNA-binding protein 28; 96.2 0.022 7.4E-07 48.9 9.4 35 199-238 13-47 (111)
53 2cqp_A RNA-binding protein 12; 96.2 0.01 3.4E-07 49.8 7.0 38 320-357 57-96 (98)
54 1x4a_A Splicing factor, argini 96.2 0.031 1.1E-06 47.8 10.3 34 320-353 61-96 (109)
55 2dng_A Eukaryotic translation 96.2 0.03 1E-06 47.4 10.0 37 198-240 12-48 (103)
56 2cpd_A Apobec-1 stimulating pr 96.2 0.031 1.1E-06 46.8 10.1 34 198-234 12-45 (99)
57 2cpj_A Non-POU domain-containi 96.2 0.03 1E-06 47.0 9.8 37 321-357 52-90 (99)
58 3s7r_A Heterogeneous nuclear r 96.1 0.015 5.1E-07 47.5 7.6 38 198-240 8-45 (87)
59 1uaw_A Mouse-musashi-1; RNP-ty 96.1 0.019 6.5E-07 45.5 7.9 34 320-353 42-76 (77)
60 1p1t_A Cleavage stimulation fa 96.1 0.011 3.7E-07 50.1 6.7 37 320-356 50-88 (104)
61 3ns6_A Eukaryotic translation 96.1 0.012 4.2E-07 49.7 7.0 34 320-353 54-90 (100)
62 3ex7_B RNA-binding protein 8A; 96.1 0.032 1.1E-06 49.0 10.0 34 320-353 64-99 (126)
63 1s79_A Lupus LA protein; RRM, 96.1 0.031 1.1E-06 47.6 9.5 38 198-240 8-45 (103)
64 2dgx_A KIAA0430 protein; RRM d 96.0 0.032 1.1E-06 46.6 9.3 34 321-354 53-88 (96)
65 3ulh_A THO complex subunit 4; 96.0 0.029 9.9E-07 47.7 9.2 39 197-240 25-63 (107)
66 2kxn_B Transformer-2 protein h 96.0 0.029 1E-06 49.9 9.5 78 199-353 44-123 (129)
67 2dnq_A RNA-binding protein 4B; 96.0 0.055 1.9E-06 44.4 10.6 34 321-354 43-78 (90)
68 2cpf_A RNA binding motif prote 96.0 0.023 7.8E-07 47.6 8.3 38 199-241 3-40 (98)
69 2kt5_A RNA and export factor-b 96.0 0.037 1.3E-06 48.6 9.9 35 320-354 76-112 (124)
70 2dnp_A RNA-binding protein 14; 96.0 0.035 1.2E-06 45.7 9.2 34 321-354 44-79 (90)
71 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.0 0.022 7.5E-07 51.0 8.6 35 199-238 61-95 (140)
72 3d2w_A TAR DNA-binding protein 96.0 0.014 4.9E-07 48.2 6.8 35 197-236 7-41 (89)
73 2cpe_A RNA-binding protein EWS 96.0 0.031 1.1E-06 48.1 9.2 36 319-354 64-101 (113)
74 2err_A Ataxin-2-binding protei 95.9 0.027 9.1E-07 48.4 8.5 34 320-353 69-104 (109)
75 3nmr_A Cugbp ELAV-like family 95.9 0.047 1.6E-06 50.4 10.9 103 200-377 2-116 (175)
76 1wf0_A TDP-43, TAR DNA-binding 95.9 0.011 3.8E-07 48.5 5.8 26 200-228 4-29 (88)
77 3r27_A HnRNP L, heterogeneous 95.9 0.038 1.3E-06 46.8 9.0 36 197-237 17-52 (100)
78 2ytc_A PRE-mRNA-splicing facto 95.8 0.042 1.4E-06 44.5 8.9 34 198-236 9-42 (85)
79 2dgt_A RNA-binding protein 30; 95.8 0.043 1.5E-06 45.3 9.1 34 321-354 45-80 (92)
80 4f02_A Polyadenylate-binding p 95.8 0.051 1.7E-06 52.6 10.9 101 200-377 14-124 (213)
81 1wex_A Hypothetical protein (r 95.8 0.063 2.2E-06 45.8 10.1 34 321-354 52-89 (104)
82 1x5o_A RNA binding motif, sing 95.7 0.064 2.2E-06 46.2 10.3 37 199-240 23-59 (114)
83 2ek1_A RNA-binding protein 12; 95.7 0.017 5.8E-07 48.0 6.3 34 320-353 57-92 (95)
84 2cpi_A CCR4-NOT transcription 95.7 0.028 9.6E-07 48.4 7.9 35 320-354 63-99 (111)
85 1x4c_A Splicing factor, argini 95.7 0.048 1.6E-06 46.6 9.4 33 199-236 13-45 (108)
86 2ki2_A SS-DNA binding protein 95.7 0.018 6E-07 47.4 6.3 36 320-356 43-80 (90)
87 1x4g_A Nucleolysin TIAR; struc 95.7 0.054 1.8E-06 46.3 9.7 35 321-355 62-98 (109)
88 1x4e_A RNA binding motif, sing 95.7 0.041 1.4E-06 44.6 8.5 36 199-239 3-38 (85)
89 1sjq_A Polypyrimidine tract-bi 95.7 0.04 1.4E-06 47.1 8.6 35 198-237 13-47 (105)
90 1wf1_A RNA-binding protein RAL 95.7 0.039 1.3E-06 47.3 8.7 36 321-356 63-100 (110)
91 1why_A Hypothetical protein ri 95.7 0.059 2E-06 44.9 9.6 34 321-354 54-91 (97)
92 2i2y_A Fusion protein consists 95.7 0.072 2.5E-06 48.4 10.8 36 321-356 111-148 (150)
93 2e44_A Insulin-like growth fac 95.7 0.057 1.9E-06 44.8 9.3 36 321-356 55-92 (96)
94 2do0_A HnRNP M, heterogeneous 95.6 0.057 1.9E-06 46.5 9.6 38 198-240 12-49 (114)
95 2cq1_A PTB-like protein L; RRM 95.6 0.05 1.7E-06 46.2 8.9 34 198-236 12-45 (101)
96 1nu4_A U1A RNA binding domain; 95.6 0.033 1.1E-06 46.4 7.8 39 321-359 52-92 (97)
97 2dgw_A Probable RNA-binding pr 95.6 0.042 1.4E-06 45.2 8.3 38 197-240 6-43 (91)
98 2dgu_A Heterogeneous nuclear r 95.6 0.051 1.7E-06 45.9 9.0 35 321-355 46-82 (103)
99 3md3_A Nuclear and cytoplasmic 95.6 0.067 2.3E-06 48.8 10.6 57 320-376 41-107 (166)
100 2j76_E EIF-4B, EIF4B, eukaryot 95.6 0.039 1.3E-06 46.5 8.1 35 198-238 16-50 (100)
101 2dh8_A DAZ-associated protein 95.6 0.027 9.3E-07 47.8 7.1 38 198-240 13-50 (105)
102 1whx_A Hypothetical protein ri 95.6 0.036 1.2E-06 47.8 7.9 35 321-355 47-83 (111)
103 3n9u_C Cleavage and polyadenyl 95.5 0.044 1.5E-06 50.5 8.8 79 200-353 54-134 (156)
104 2ad9_A Polypyrimidine tract-bi 95.5 0.057 1.9E-06 47.3 8.9 35 198-237 28-62 (119)
105 1u6f_A Tcubp1, RNA-binding pro 95.5 0.057 1.9E-06 48.3 9.3 36 200-240 41-76 (139)
106 1x4f_A Matrin 3; structural ge 95.5 0.058 2E-06 46.7 8.8 40 321-360 63-106 (112)
107 2f3j_A RNA and export factor b 95.4 0.057 1.9E-06 50.9 9.5 42 320-361 129-172 (177)
108 2lea_A Serine/arginine-rich sp 95.4 0.039 1.3E-06 49.5 7.9 34 320-353 89-124 (135)
109 2kvi_A Nuclear polyadenylated 95.4 0.059 2E-06 44.9 8.6 34 321-354 46-81 (96)
110 2dis_A Unnamed protein product 95.4 0.082 2.8E-06 45.0 9.7 35 320-354 52-90 (109)
111 2fc8_A NCL protein; structure 95.4 0.057 2E-06 45.4 8.6 37 320-356 54-92 (102)
112 2qfj_A FBP-interacting repress 95.4 0.11 3.9E-06 49.7 11.8 58 320-377 70-146 (216)
113 1iqt_A AUF1, heterogeneous nuc 95.4 0.026 8.8E-07 44.5 5.9 21 319-339 40-60 (75)
114 2e5j_A Methenyltetrahydrofolat 95.4 0.11 3.7E-06 43.3 10.1 37 320-356 56-94 (97)
115 2cpy_A RNA-binding protein 12; 95.4 0.038 1.3E-06 47.8 7.4 28 198-228 12-39 (114)
116 2mss_A Protein (musashi1); RNA 95.4 0.036 1.2E-06 43.7 6.7 19 320-338 41-59 (75)
117 2jwn_A Embryonic polyadenylate 95.3 0.05 1.7E-06 47.6 8.3 35 201-240 36-70 (124)
118 1x4d_A Matrin 3; structural ge 95.3 0.063 2.1E-06 45.7 8.3 36 321-356 53-92 (102)
119 2rs2_A Musashi-1, RNA-binding 95.3 0.06 2.1E-06 46.2 8.3 36 199-239 23-58 (109)
120 2hvz_A Splicing factor, argini 95.3 0.072 2.5E-06 44.7 8.7 33 321-353 38-72 (101)
121 1l3k_A Heterogeneous nuclear r 95.3 0.12 4E-06 48.8 11.3 103 198-377 10-125 (196)
122 3sde_A Paraspeckle component 1 95.2 0.11 3.9E-06 51.8 11.6 57 321-377 59-117 (261)
123 2cq4_A RNA binding motif prote 95.2 0.044 1.5E-06 47.3 7.4 35 200-239 24-58 (114)
124 2dnl_A Cytoplasmic polyadenyla 95.2 0.036 1.2E-06 48.0 6.7 28 199-229 6-33 (114)
125 1x4b_A Heterogeneous nuclear r 95.2 0.065 2.2E-06 46.3 8.4 35 201-240 27-61 (116)
126 1wez_A HnRNP H', FTP-3, hetero 95.2 0.066 2.3E-06 45.4 8.2 36 199-240 13-48 (102)
127 2kn4_A Immunoglobulin G-bindin 95.2 0.076 2.6E-06 48.6 9.3 34 320-353 112-147 (158)
128 2jvo_A Nucleolar protein 3; nu 95.1 0.091 3.1E-06 45.0 9.1 33 321-353 66-100 (108)
129 1wg5_A Heterogeneous nuclear r 95.1 0.12 4E-06 43.8 9.7 27 199-228 13-39 (104)
130 2cjk_A Nuclear polyadenylated 95.1 0.045 1.5E-06 50.2 7.4 58 320-377 45-108 (167)
131 1rk8_A CG8781-PA, CG8781-PA pr 95.1 0.091 3.1E-06 48.7 9.5 38 198-240 69-106 (165)
132 2xnq_A Nuclear polyadenylated 95.0 0.16 5.4E-06 42.4 9.9 34 321-354 58-93 (97)
133 3beg_B Splicing factor, argini 94.9 0.081 2.8E-06 45.8 8.2 23 321-343 52-74 (115)
134 2la4_A Nuclear and cytoplasmic 94.9 0.093 3.2E-06 44.0 8.4 28 198-228 24-51 (101)
135 2nlw_A Eukaryotic translation 94.9 0.14 4.7E-06 43.4 9.5 37 320-356 61-100 (105)
136 2adc_A Polypyrimidine tract-bi 94.9 0.17 5.8E-06 49.4 11.4 34 199-237 32-66 (229)
137 2pe8_A Splicing factor 45; RRM 94.9 0.15 5.3E-06 43.4 9.7 36 320-355 56-93 (105)
138 2jvr_A Nucleolar protein 3; RN 94.8 0.074 2.5E-06 46.0 7.6 35 320-354 67-103 (111)
139 3smz_A Protein raver-1, ribonu 94.8 0.17 5.7E-06 51.0 11.4 58 320-377 57-116 (284)
140 2lmi_A GRSF-1, G-rich sequence 94.8 0.095 3.3E-06 44.6 8.1 29 198-229 8-36 (107)
141 3tyt_A Heterogeneous nuclear r 94.7 0.19 6.4E-06 48.4 11.1 34 199-237 2-36 (205)
142 2m2b_A RNA-binding protein 10; 94.7 0.074 2.5E-06 47.2 7.6 28 199-229 21-48 (131)
143 1qm9_A Polypyrimidine tract-bi 94.5 0.15 5.2E-06 48.2 9.8 26 200-228 2-28 (198)
144 3md3_A Nuclear and cytoplasmic 94.4 0.18 6E-06 45.9 9.6 38 198-240 84-121 (166)
145 1wel_A RNA-binding protein 12; 94.4 0.056 1.9E-06 47.4 5.8 33 320-353 67-101 (124)
146 2hgl_A HNRPF protein, heteroge 94.3 0.09 3.1E-06 47.2 7.2 39 199-240 42-81 (136)
147 3q2s_C Cleavage and polyadenyl 94.2 0.11 3.6E-06 51.2 8.1 80 200-354 67-148 (229)
148 2qfj_A FBP-interacting repress 94.2 0.18 6.2E-06 48.2 9.8 36 200-240 124-159 (216)
149 2dnn_A RNA-binding protein 12; 94.2 0.098 3.3E-06 45.0 6.9 34 200-239 15-48 (109)
150 1b7f_A Protein (SXL-lethal pro 94.2 0.25 8.6E-06 45.1 10.2 37 199-240 87-123 (168)
151 2krb_A Eukaryotic translation 94.0 0.14 4.9E-06 40.9 7.3 24 320-343 47-70 (81)
152 3nmr_A Cugbp ELAV-like family 93.8 0.28 9.6E-06 45.0 9.9 36 199-239 93-128 (175)
153 2e5g_A U6 snRNA-specific termi 93.7 0.36 1.2E-05 39.8 9.4 27 199-228 6-32 (94)
154 2hgn_A Heterogeneous nuclear r 93.7 0.094 3.2E-06 47.3 6.0 28 199-229 44-71 (139)
155 2wbr_A GW182, gawky, LD47780P; 93.6 0.36 1.2E-05 39.7 8.7 33 321-353 44-78 (89)
156 2hgm_A HNRPF protein, heteroge 93.5 0.19 6.5E-06 44.4 7.6 27 199-228 40-66 (126)
157 1fxl_A Paraneoplastic encephal 93.4 0.34 1.2E-05 43.9 9.7 37 199-240 86-122 (167)
158 2voo_A Lupus LA protein; RNA-b 93.3 0.14 4.7E-06 48.9 6.9 35 201-240 109-143 (193)
159 2g4b_A Splicing factor U2AF 65 92.9 0.22 7.7E-06 45.7 7.6 37 199-240 92-128 (172)
160 3smz_A Protein raver-1, ribonu 92.7 0.12 4.1E-06 52.1 5.8 40 198-242 92-131 (284)
161 2ghp_A U4/U6 snRNA-associated 92.6 0.59 2E-05 47.1 10.8 99 199-378 39-139 (292)
162 4f02_A Polyadenylate-binding p 92.5 0.38 1.3E-05 46.3 8.9 36 200-240 102-137 (213)
163 1l3k_A Heterogeneous nuclear r 92.5 0.37 1.3E-05 45.2 8.6 37 199-240 102-138 (196)
164 2yh0_A Splicing factor U2AF 65 92.3 0.49 1.7E-05 44.4 9.3 79 199-354 112-192 (198)
165 2g4b_A Splicing factor U2AF 65 92.3 1.2 4E-05 40.7 11.6 56 321-377 52-115 (172)
166 3pgw_S U1-70K; protein-RNA com 91.9 0.41 1.4E-05 51.7 9.1 42 320-361 144-187 (437)
167 3pgw_A U1-A; protein-RNA compl 91.8 1.1 3.8E-05 44.7 11.8 36 199-236 7-43 (282)
168 2lcw_A RNA-binding protein FUS 90.8 0.035 1.2E-06 48.1 0.0 35 320-354 57-93 (116)
169 2cjk_A Nuclear polyadenylated 91.1 0.53 1.8E-05 42.8 7.8 34 319-353 128-163 (167)
170 1jmt_A Splicing factor U2AF 35 91.0 0.63 2.1E-05 39.4 7.5 36 319-354 67-104 (104)
171 1qm9_A Polypyrimidine tract-bi 90.7 0.7 2.4E-05 43.5 8.5 35 321-355 159-196 (198)
172 3pgw_A U1-A; protein-RNA compl 90.3 0.95 3.3E-05 45.3 9.5 33 321-353 245-280 (282)
173 2yh0_A Splicing factor U2AF 65 90.2 1.5 5.1E-05 41.0 10.3 26 200-228 3-28 (198)
174 2dit_A HIV TAT specific factor 90.2 0.91 3.1E-05 38.7 7.9 45 319-363 63-109 (112)
175 2adc_A Polypyrimidine tract-bi 90.0 1.2 4.3E-05 43.1 9.8 35 321-355 190-227 (229)
176 3u1l_A PRE-mRNA-splicing facto 89.5 1.1 3.7E-05 44.1 8.8 23 321-343 180-202 (240)
177 1sjr_A Polypyrimidine tract-bi 89.4 1.6 5.5E-05 40.2 9.3 34 321-354 85-122 (164)
178 3sde_A Paraspeckle component 1 88.8 1.3 4.4E-05 44.0 9.0 36 200-240 95-130 (261)
179 3s6e_A RNA-binding protein 39; 87.9 0.84 2.9E-05 39.4 5.9 58 297-354 26-91 (114)
180 3zzy_A Polypyrimidine tract-bi 87.8 1.9 6.5E-05 38.1 8.3 35 322-356 68-106 (130)
181 2d9o_A DNAJ (HSP40) homolog, s 86.9 0.93 3.2E-05 38.1 5.5 36 319-354 53-88 (100)
182 3v4m_A Splicing factor U2AF 65 86.9 1.6 5.3E-05 37.0 7.0 37 319-355 58-96 (105)
183 1wg1_A KIAA1579 protein, homol 85.9 0.47 1.6E-05 38.5 3.1 38 320-357 40-79 (88)
184 3tyt_A Heterogeneous nuclear r 85.4 1.7 5.8E-05 41.5 7.3 24 320-343 165-188 (205)
185 2ghp_A U4/U6 snRNA-associated 85.2 3 0.0001 41.8 9.5 58 320-377 159-232 (292)
186 1fj7_A Nucleolin RBD1, protein 83.7 2.7 9.3E-05 34.7 7.0 35 319-354 57-93 (101)
187 2xs2_A Deleted in azoospermia- 83.0 1.4 4.6E-05 36.7 4.8 39 198-241 6-44 (102)
188 2dha_A FLJ20171 protein; RRM d 82.1 1.3 4.3E-05 38.8 4.4 40 199-241 21-62 (123)
189 2fc9_A NCL protein; structure 80.2 1.7 5.7E-05 36.0 4.4 36 319-354 52-89 (101)
190 2cpx_A Hypothetical protein FL 79.8 2.5 8.6E-05 35.8 5.5 36 319-354 66-103 (115)
191 2cqh_A IGF-II mRNA-binding pro 79.7 1.7 5.7E-05 35.4 4.1 34 321-354 45-81 (93)
192 1fjc_A Nucleolin RBD2, protein 79.1 1.4 4.6E-05 36.2 3.4 35 320-354 53-89 (96)
193 1x5p_A Negative elongation fac 79.1 2 6.8E-05 35.3 4.4 35 320-354 49-85 (97)
194 2db1_A Heterogeneous nuclear r 78.4 2.3 7.9E-05 36.6 4.8 40 199-241 15-55 (118)
195 2bz2_A Negative elongation fac 74.0 4.5 0.00015 34.9 5.5 36 320-355 73-110 (121)
196 3ue2_A Poly(U)-binding-splicin 70.2 2.6 9.1E-05 36.4 3.0 36 320-355 71-108 (118)
197 1fje_B Nucleolin RBD12, protei 65.3 8.1 0.00028 35.0 5.6 59 319-378 53-121 (175)
198 2e5i_A Heterogeneous nuclear r 64.3 9.3 0.00032 33.3 5.4 37 321-357 62-103 (124)
199 2hzc_A Splicing factor U2AF 65 64.0 7.4 0.00025 30.7 4.4 26 200-228 5-30 (87)
200 1wg1_A KIAA1579 protein, homol 63.6 5.3 0.00018 32.0 3.5 33 200-238 4-36 (88)
201 3egn_A RNA-binding protein 40; 62.4 4.8 0.00016 35.6 3.2 34 320-353 92-127 (143)
202 2cq2_A Hypothetical protein LO 62.1 5.3 0.00018 34.3 3.3 23 321-343 64-86 (114)
203 2dhx_A Poly (ADP-ribose) polym 61.9 9.9 0.00034 31.9 4.7 35 200-237 7-44 (104)
204 2hzc_A Splicing factor U2AF 65 59.9 6.7 0.00023 31.0 3.4 22 320-342 53-74 (87)
205 1fje_B Nucleolin RBD12, protei 59.5 7 0.00024 35.4 3.9 36 319-354 135-172 (175)
206 1l8d_A DNA double-strand break 57.7 29 0.00099 29.2 7.3 33 279-311 48-86 (112)
207 2db1_A Heterogeneous nuclear r 57.1 5.7 0.00019 34.0 2.6 20 319-338 60-79 (118)
208 2fc9_A NCL protein; structure 53.5 10 0.00036 30.9 3.7 28 198-228 12-39 (101)
209 2dnr_A Synaptojanin-1; RRM dom 52.8 12 0.00042 30.6 3.7 32 321-353 50-83 (91)
210 3ue2_A Poly(U)-binding-splicin 51.1 16 0.00054 31.4 4.5 41 200-242 19-61 (118)
211 2cqh_A IGF-II mRNA-binding pro 50.6 11 0.00037 30.3 3.2 30 198-230 5-34 (93)
212 3he5_A Synzip1; heterodimeric 48.7 32 0.0011 23.2 4.5 21 287-307 29-49 (49)
213 2j8a_A Histone-lysine N-methyl 47.2 20 0.00067 31.6 4.4 37 202-243 3-43 (136)
214 1fjc_A Nucleolin RBD2, protein 45.2 16 0.00055 29.4 3.5 28 198-228 13-40 (96)
215 2dha_A FLJ20171 protein; RRM d 43.5 7.5 0.00026 33.7 1.2 21 319-339 67-87 (123)
216 1fj7_A Nucleolin RBD1, protein 42.2 19 0.00065 29.3 3.5 26 200-228 16-41 (101)
217 2cpx_A Hypothetical protein FL 41.7 19 0.00064 30.1 3.5 27 199-228 23-49 (115)
218 3dxb_A Thioredoxin N-terminall 41.2 19 0.00066 34.2 3.9 37 319-355 174-212 (222)
219 2xs2_A Deleted in azoospermia- 39.1 8.2 0.00028 31.7 0.7 20 319-338 49-68 (102)
220 2kn4_A Immunoglobulin G-bindin 38.9 44 0.0015 29.6 5.7 60 319-378 12-92 (158)
221 2dhx_A Poly (ADP-ribose) polym 36.5 56 0.0019 27.3 5.3 45 321-365 48-95 (104)
222 2cq2_A Hypothetical protein LO 31.1 41 0.0014 28.6 3.9 36 199-239 23-60 (114)
223 3tht_A Alkylated DNA repair pr 30.4 31 0.0011 35.6 3.5 22 321-342 57-78 (345)
224 3egn_A RNA-binding protein 40; 29.6 41 0.0014 29.3 3.8 29 198-229 42-70 (143)
225 2e5i_A Heterogeneous nuclear r 27.1 69 0.0024 27.6 4.7 32 204-240 28-59 (124)
226 1ufw_A Synaptojanin 2; RNP dom 26.2 36 0.0012 28.0 2.5 19 320-338 58-76 (95)
227 3twe_A Alpha4H; unknown functi 23.9 1E+02 0.0036 18.2 3.4 20 294-313 6-25 (27)
228 3ra3_A P1C; coiled coil domain 21.8 1.2E+02 0.0043 18.0 3.4 20 288-307 2-25 (28)
229 3v4m_A Splicing factor U2AF 65 21.5 67 0.0023 26.5 3.4 41 200-242 4-51 (105)
230 2dit_A HIV TAT specific factor 21.3 1.2E+02 0.004 25.0 5.0 38 199-238 13-58 (112)
No 1
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.0043 Score=51.73 Aligned_cols=83 Identities=10% Similarity=0.037 Sum_probs=59.1
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcccc
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKT 278 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r~ 278 (677)
+..+||.|.|||.+.++ +.|+++|++. |.+.++.+.+|-. +
T Consensus 3 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~~-------------------------------~--- 43 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITE---DMLRGIFEPF--GKIDNIVLMKDSD-------------------------------T--- 43 (95)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEECCSS-------------------------------S---
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEeecCC-------------------------------C---
Confidence 45689999999998775 7789999876 4566655543210 0
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCC
Q 005776 279 GFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (677)
Q Consensus 279 ~~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 356 (677)
.. ..|.|||+|++.++|..|.+.+... +...++|+.|.++
T Consensus 44 -----------------------------------~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 85 (95)
T 2dnz_A 44 -----------------------------------GR---SKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 85 (95)
T ss_dssp -----------------------------------CC---CCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCC
T ss_pred -----------------------------------Cc---eeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccc
Confidence 01 3489999999999999999876543 3456788887654
Q ss_pred CC
Q 005776 357 RD 358 (677)
Q Consensus 357 ~D 358 (677)
.+
T Consensus 86 ~~ 87 (95)
T 2dnz_A 86 LD 87 (95)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.11 E-value=0.0018 Score=54.98 Aligned_cols=78 Identities=10% Similarity=0.130 Sum_probs=57.0
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcccc
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKT 278 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r~ 278 (677)
.+..+|.|.|||.+.++ +.|+++|++. |.|.++.+.+|-. +
T Consensus 17 ~~gt~lfV~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~~-------------------------------t--- 57 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQ---DELRSLFSSI--GEVESAKLIRDKV-------------------------------A--- 57 (99)
T ss_dssp CCCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEECSS-------------------------------S---
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEeEeeecCC-------------------------------C---
Confidence 34569999999998876 7889999887 5677776654310 0
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 279 GFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 279 ~~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
.. ..|.|||+|.+.++|..|.+.+... ....++|+.|
T Consensus 58 -----------------------------------g~---~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 58 -----------------------------------GH---SLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp -----------------------------------CC---EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred -----------------------------------Cc---ccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 00 2489999999999999999877543 3445677776
No 3
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.05 E-value=0.0015 Score=55.11 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=27.9
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEE
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 238 (677)
.....||.|.|||.+.++ +.|+++|+++.+..+.++.+
T Consensus 6 ~~~m~tlfV~nL~~~~te---e~L~~~F~~~G~i~v~~v~i 43 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVV---DSIMTALSPYASLAVNNIRL 43 (95)
T ss_dssp SCCCCEEEEESCCTTCCH---HHHHHHSTTTCCCCGGGEEC
T ss_pred CCccCEEEEeCCCCcCCH---HHHHHHHHhhCCccEEEEEE
Confidence 445679999999998876 78999998875434444433
No 4
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.89 E-value=0.0066 Score=50.69 Aligned_cols=40 Identities=10% Similarity=0.186 Sum_probs=34.9
Q ss_pred CeEEEEecCHHHHHHHHHhhcCCC--CCcceeeeCCCCCCee
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTRN--PTLWLTEWASEPRDVY 360 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~~--~~~~~v~~AP~P~DIi 360 (677)
|.|||+|+++++|+.|.+.++... ...++++.|+..+|++
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELC 88 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCccee
Confidence 899999999999999998877653 4678899999999986
No 5
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.89 E-value=0.0058 Score=52.64 Aligned_cols=84 Identities=12% Similarity=0.123 Sum_probs=61.2
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccc
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMK 277 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r 277 (677)
.+..+||.|.|||.+.++ +.|+++|++. |.+.++.+.+|-. +
T Consensus 23 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~~-------------------------------~-- 64 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITE---DMLRGIFEPF--GRIESIQLMMDSE-------------------------------T-- 64 (108)
T ss_dssp CSSCEEEEEECCCSSCCH---HHHHHHHTTT--SCEEEEEEEEETT-------------------------------T--
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcCC-------------------------------C--
Confidence 346799999999998775 7789999877 5566666554310 0
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCC
Q 005776 278 TGFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (677)
Q Consensus 278 ~~~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 355 (677)
| . ..|.|||+|.+..+|..|.+.+... ....+.|+.|-+
T Consensus 65 -------g-----------------------------~---~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 65 -------G-----------------------------R---SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp -------T-----------------------------E---EEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred -------C-----------------------------c---cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 0 0 2489999999999999999877654 345678888876
Q ss_pred CCC
Q 005776 356 PRD 358 (677)
Q Consensus 356 P~D 358 (677)
..|
T Consensus 106 k~d 108 (108)
T 2jrs_A 106 RTD 108 (108)
T ss_dssp SCC
T ss_pred CCC
Confidence 655
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=96.88 E-value=0.0039 Score=54.00 Aligned_cols=80 Identities=10% Similarity=0.053 Sum_probs=60.0
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcccc
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKT 278 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r~ 278 (677)
+..+||.|.|+|.+.++ +.|+++|+++ |.|.++.+.+|-. +
T Consensus 4 ~p~~~lfV~nL~~~~te---~~L~~~F~~~--G~i~~v~i~~d~~-------------------------------t--- 44 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRE---TFLKDMCRKY--GEVEEVEILLHPR-------------------------------T--- 44 (110)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECTT-------------------------------T---
T ss_pred CCCcEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEECCC-------------------------------C---
Confidence 45689999999998876 7889999887 6777777765410 0
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCC
Q 005776 279 GFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (677)
Q Consensus 279 ~~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 355 (677)
.. ..|.|||+|++.++|+.|.+.+... ....+.|+.|+.
T Consensus 45 -----------------------------------g~---~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 45 -----------------------------------RK---HLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp -----------------------------------CC---EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred -----------------------------------Cc---eeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 00 2489999999999999999887654 345677777753
No 7
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=96.82 E-value=0.0017 Score=54.22 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=26.5
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC---CCCcceeeeC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR---NPTLWLTEWA 353 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~---~~~~~~v~~A 353 (677)
..|.|||+|.+.++|..|.+...+. +...+.|+.|
T Consensus 43 ~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 43 SRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred cCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 3589999999999999998765332 3456777765
No 8
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.79 E-value=0.0065 Score=51.40 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=27.5
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
.+.|||+|.+.++|..|.+.+... +...+.|+.|-
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 54 RGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 489999999999999999876644 34556777764
No 9
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=96.73 E-value=0.0063 Score=49.49 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=27.3
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEE
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 238 (677)
.++.+||.|.|||.+.++ +.|+++|++. |.+.++.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~---~~l~~~f~~~--G~i~~v~i 39 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQI 39 (85)
T ss_dssp CCCSSEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEC
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHhcc--CCEEEEEE
Confidence 346789999999998775 7888999887 45555543
No 10
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=96.69 E-value=0.003 Score=52.34 Aligned_cols=38 Identities=11% Similarity=-0.069 Sum_probs=26.2
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPR 357 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~ 357 (677)
.|.|||+|++..+|..|.+.+... ....+.|+.|.+|.
T Consensus 45 kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 45 KGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLE 84 (90)
T ss_dssp EEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC----
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCc
Confidence 489999999999999999877654 34566777765443
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.68 E-value=0.0089 Score=50.24 Aligned_cols=37 Identities=14% Similarity=-0.055 Sum_probs=28.1
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 356 (677)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-++
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 50 KGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp CSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 489999999999999999776543 3455677776543
No 12
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.67 E-value=0.015 Score=48.77 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=28.5
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEE
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (677)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.
T Consensus 7 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~ 43 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGE---TELREYFKKF--GVVTEVVMI 43 (99)
T ss_dssp CSSCCEEEEESCCSSCCH---HHHHHHHSSS--SCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEE
Confidence 456789999999998876 7799999886 556665543
No 13
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.66 E-value=0.011 Score=50.23 Aligned_cols=36 Identities=19% Similarity=0.003 Sum_probs=28.2
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 355 (677)
.|.|||+|.+.++|..|.+.+... ....+.|+.|-.
T Consensus 57 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 57 QGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp CSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 489999999999999999876643 345677777643
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=96.65 E-value=0.012 Score=54.13 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=40.6
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCC------CCeeecccccchhHHHHHHHH
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP------RDVYWQNLAIPYVSLSVRRLI 377 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P------~DIiW~NL~~~~~~r~~R~~~ 377 (677)
.|.|||+|.+.++|..|.+.+... ....+.++.|.++ ..+.=.||..+..+.-++.++
T Consensus 44 ~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 109 (167)
T 1fxl_A 44 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 109 (167)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHH
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHH
Confidence 489999999999999999876543 2344566665432 347888888776666555543
No 15
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=96.65 E-value=0.0072 Score=49.37 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=27.7
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
++.+||.|.|||.+.++ +.|+++|++. |.+.++.+.+
T Consensus 4 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 40 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITT---AAIAAAFAPF--GRISDARVVK 40 (87)
T ss_dssp --CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCceEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEEe
Confidence 45789999999998775 7789999887 5566666543
No 16
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=96.63 E-value=0.0077 Score=49.28 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=28.2
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 356 (677)
.|.|||+|++..+|..|.+.+... ....+.|+.|-+|
T Consensus 47 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 47 KGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred CcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 489999999999999999876654 3455677765443
No 17
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.60 E-value=0.0086 Score=49.97 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=27.4
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 48 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 48 KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp CSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred CeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 489999999999999999876544 34556777764
No 18
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.58 E-value=0.0082 Score=49.88 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=28.1
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEE
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (677)
.+..++|.|.|||.+.++ +.|+++|++. |.|.++.+.
T Consensus 13 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~ 49 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTN---NDLYRIFSKY--GKVVKVTIM 49 (94)
T ss_dssp CCCTTSEEEESCCTTSCH---HHHHHHTTTT--SCEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEEEEE
Confidence 456789999999998775 7789999877 455555443
No 19
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=96.56 E-value=0.011 Score=49.34 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=28.6
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 356 (677)
.|.|||+|++..+|..|.+.+... ....+.|+.|-++
T Consensus 44 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 44 KGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 489999999999999999876643 3456777777443
No 20
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=96.55 E-value=0.011 Score=51.44 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=28.1
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
+..+|.|.|||.+.++ +.|+++|+++ |.|.++.+.+
T Consensus 4 ~~~~lfV~nLp~~~te---~~L~~~F~~~--G~v~~v~i~~ 39 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVC 39 (115)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCEEEECCCCCCCCH---HHHHHHHhcc--CCEEEEEEee
Confidence 3468999999998876 7899999887 5677766654
No 21
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=96.54 E-value=0.013 Score=47.40 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=27.1
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
.|.|||+|.+..+|..|.+.+... ....+.++.|-
T Consensus 43 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 43 RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 489999999999999999876544 34456777764
No 22
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.52 E-value=0.016 Score=49.39 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=28.3
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC-----CCCcceeeeCCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR-----NPTLWLTEWASE 355 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~-----~~~~~~v~~AP~ 355 (677)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-.
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 55 KGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence 489999999999999999877653 345677877643
No 23
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.52 E-value=0.016 Score=49.05 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=27.4
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 356 (677)
|.|||+|.+..+|..|.+.+... ....+.|+.|-.+
T Consensus 56 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 56 PYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp CEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred CEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence 79999999999999999876543 3455677776443
No 24
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.51 E-value=0.025 Score=47.81 Aligned_cols=80 Identities=14% Similarity=0.116 Sum_probs=57.3
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccc
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMK 277 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r 277 (677)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~----------------------------------- 51 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRD---PDLRQMFGQF--GKILDVEIIFNE----------------------------------- 51 (103)
T ss_dssp SCCCCEEEEESCCTTCCH---HHHHHHGGGT--SCEEEEEEECCT-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC-----------------------------------
Confidence 456789999999998876 7789999887 556665544220
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCC
Q 005776 278 TGFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (677)
Q Consensus 278 ~~~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 355 (677)
.. ..+.|||+|.+..+|..|.+.+... ....+.|+.|-.
T Consensus 52 ------------------------------------~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 52 ------------------------------------RG---SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp ------------------------------------TT---TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred ------------------------------------CC---CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 00 2389999999999999999876543 345567776643
Q ss_pred C
Q 005776 356 P 356 (677)
Q Consensus 356 P 356 (677)
+
T Consensus 93 ~ 93 (103)
T 2cq3_A 93 R 93 (103)
T ss_dssp S
T ss_pred C
Confidence 3
No 25
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.50 E-value=0.016 Score=49.27 Aligned_cols=79 Identities=11% Similarity=0.171 Sum_probs=56.7
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccc
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMK 277 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r 277 (677)
....+||.|.|||.+.++ +.|+++|++. |.|.++.+..|-. +
T Consensus 20 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~~-------------------------------~-- 61 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATE---EDIHDKFAEY--GEIKNIHLNLDRR-------------------------------T-- 61 (106)
T ss_dssp BTTBEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEECTT-------------------------------T--
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCeEEEEEEecCC-------------------------------C--
Confidence 345789999999998775 7789999887 5666666543310 0
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 278 TGFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 278 ~~~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
| . ..|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 62 -------~-----------------------------~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 62 -------G-----------------------------Y---LKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp -------S-----------------------------S---EEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred -------C-----------------------------c---eeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 0 0 2489999999999999999876554 3455666665
No 26
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.48 E-value=0.014 Score=49.46 Aligned_cols=80 Identities=21% Similarity=0.215 Sum_probs=57.2
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccc
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMK 277 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r 277 (677)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-. +
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~~-------------------------------~-- 53 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRE---TDLQELFRPF--GSISRIYLAKDKT-------------------------------T-- 53 (103)
T ss_dssp CSSSEEEEEESCCTTCCH---HHHHTTSTTT--CCEEEEEEEECSS-------------------------------S--
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEeecCC-------------------------------C--
Confidence 456789999999998876 7899999887 5566665543310 0
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 278 TGFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 278 ~~~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
.. ..|.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 54 ------------------------------------~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 54 ------------------------------------GQ---SKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp ------------------------------------CS---EEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred ------------------------------------Cc---eeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 00 2489999999999999999876543 34456676663
No 27
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=96.48 E-value=0.01 Score=51.51 Aligned_cols=38 Identities=11% Similarity=0.345 Sum_probs=28.8
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
.+..+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 59 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGD---QDLLQMFMPF--GNVVSAKVFI 59 (115)
T ss_dssp CSTTCCEEEESCCSSCCH---HHHHHHHGGG--SCCSEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEE
Confidence 345689999999998876 7889999877 4556665543
No 28
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.46 E-value=0.015 Score=47.95 Aligned_cols=37 Identities=11% Similarity=-0.067 Sum_probs=27.9
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 356 (677)
.|.|||+|.+..+|..|.+.+... +...+.|+.|-++
T Consensus 48 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 48 KGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 379999999999999999876643 3455677766443
No 29
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.46 E-value=0.014 Score=49.23 Aligned_cols=80 Identities=10% Similarity=0.128 Sum_probs=57.2
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccc
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMK 277 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r 277 (677)
....+||.|.|||.+.++ +.|+++|+++ |.+.++.+..|- +
T Consensus 14 ~~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~--------------------------------~-- 54 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTK---EELEEICKAH--GTVKDLRLVTNR--------------------------------A-- 54 (100)
T ss_dssp CCCCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECT--------------------------------T--
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEEECC--------------------------------C--
Confidence 345789999999998875 7789999876 556666554320 0
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCC
Q 005776 278 TGFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (677)
Q Consensus 278 ~~~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 355 (677)
.. ..|.|||+|++.++|..|.+.+... ....+.|+.|-+
T Consensus 55 ------------------------------------g~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 55 ------------------------------------GK---PKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp ------------------------------------SC---EEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred ------------------------------------CC---EEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 00 2489999999999999999876543 345677777643
No 30
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.45 E-value=0.015 Score=49.30 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=27.2
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
.|.|||+|.+.++|..|.+.+... ....+.|+.|-
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 55 RGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 489999999999999999876654 34556777663
No 31
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.43 E-value=0.02 Score=49.59 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=29.5
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 49 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITT---EDIKAAFAPF--GRISDARVVK 49 (115)
T ss_dssp STTCEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEE
Confidence 356789999999998876 7789999887 5566666554
No 32
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.42 E-value=0.024 Score=48.09 Aligned_cols=79 Identities=19% Similarity=0.164 Sum_probs=57.4
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccc
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMK 277 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r 277 (677)
.+..+||.|.|||.+.++ +.|+++|+++ |.|.++.+..|- +
T Consensus 12 ~~~~~~l~v~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~--------------------------------~-- 52 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSE---EDVLRLFQPF--GVIDECTVLRGP--------------------------------D-- 52 (105)
T ss_dssp CCCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECS--------------------------------S--
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC--------------------------------C--
Confidence 356789999999998875 7789999877 456666554320 0
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CC---Ccceeee
Q 005776 278 TGFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NP---TLWLTEW 352 (677)
Q Consensus 278 ~~~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~---~~~~v~~ 352 (677)
| . ..|.|||+|.+..+|..|.+.+... .. ..+.|+.
T Consensus 53 -------g-----------------------------~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 53 -------G-----------------------------S---SKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp -------S-----------------------------C---EEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred -------C-----------------------------C---cCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 0 0 2389999999999999999877654 22 5677877
Q ss_pred CC
Q 005776 353 AS 354 (677)
Q Consensus 353 AP 354 (677)
|-
T Consensus 94 a~ 95 (105)
T 2dnh_A 94 AD 95 (105)
T ss_dssp SC
T ss_pred Cc
Confidence 64
No 33
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=96.39 E-value=0.022 Score=49.64 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=26.7
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
.|.|||+|++.++|..|.+.+... ....+.|+.|-
T Consensus 48 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 48 RGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 489999999999999999876543 33456666653
No 34
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=96.36 E-value=0.019 Score=52.89 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=41.1
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC------CCCCeeecccccchhHHHHHHHH
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS------EPRDVYWQNLAIPYVSLSVRRLI 377 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP------~P~DIiW~NL~~~~~~r~~R~~~ 377 (677)
.|.|||+|.+.++|..|.+.+... ....+.++.|. ++.-|.-.||..+..+..++..+
T Consensus 45 ~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 110 (168)
T 1b7f_A 45 YGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIF 110 (168)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhh
Confidence 489999999999999999866543 23445566543 34458888998777666665543
No 35
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.34 E-value=0.018 Score=49.99 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=28.1
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEE
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (677)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~ 50 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTD---ASLRKYFEGF--GDIEEAVVI 50 (116)
T ss_dssp SCSSSEEEEECCCSSCCH---HHHHHHHHTT--SCEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeeEEEEE
Confidence 346789999999998876 7789999876 556555543
No 36
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.33 E-value=0.012 Score=48.95 Aligned_cols=38 Identities=11% Similarity=-0.017 Sum_probs=29.0
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
.+..+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~ 49 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVY 49 (95)
T ss_dssp CCGGGCEEEESCCSSCCH---HHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEE
Confidence 456789999999998775 6788999876 5566665543
No 37
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=96.32 E-value=0.016 Score=50.40 Aligned_cols=36 Identities=14% Similarity=0.329 Sum_probs=27.9
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEE
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 238 (677)
.+..+||.|.|||.+.++ +.|+++|+++ |.+.++.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i 72 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTD---TDLASTFLPF--GNVISAKV 72 (118)
T ss_dssp CCCSEEEEEECSCTTCCH---HHHHHHTTTS--CEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEE
Confidence 445689999999998876 7899999876 55655544
No 38
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.32 E-value=0.019 Score=48.22 Aligned_cols=38 Identities=11% Similarity=0.213 Sum_probs=28.5
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCcee-EEEEEe
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYL-THQVVV 240 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~-~v~i~~ 240 (677)
....+||.|.|||.+.++ +.|+++|++. |.+. ++.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~v~i~~ 44 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDE---NFISRAFATM--GETVMSVKIIR 44 (99)
T ss_dssp CSSSSEEEECSCCTTCCH---HHHHHHHHHT--TCCCCEEEEEE
T ss_pred CCCccEEEEeCCCCCCCH---HHHHHHHHHh--CCcceEEEEee
Confidence 445789999999998876 7788899887 4455 555543
No 39
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=96.31 E-value=0.021 Score=49.02 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=26.2
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
.|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 68 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 68 KGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 489999999999999999876543 3445666655
No 40
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.30 E-value=0.026 Score=47.88 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=27.9
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEE
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (677)
....+||.|.|||.+.++ +.|+++|++. | +.++.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G-i~~v~i~ 47 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRLP 47 (104)
T ss_dssp SSSCEEEEEESCCSSCCH---HHHHHHTTTS--C-EEEEECC
T ss_pred CCCCCEEEEeCCCCcCCH---HHHHHHHHHC--C-ceEEEEe
Confidence 346799999999998876 7899999876 4 6665543
No 41
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.30 E-value=0.014 Score=49.48 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=28.6
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
...+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 49 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTE---QDLKEYFSTF--GEVLMVQVKK 49 (103)
T ss_dssp CCCCCEEEESCCSSCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCEEEEEcCCCcCCH---HHHHHHHHhc--CCeEEEEEEe
Confidence 45689999999998875 7789999887 5566666554
No 42
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=96.29 E-value=0.021 Score=47.92 Aligned_cols=34 Identities=18% Similarity=0.060 Sum_probs=26.0
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
.|.|||+|.+.++|+.|.+.+... ....++|+.|
T Consensus 63 ~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 63 KGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp EEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 489999999999999999876543 3445566554
No 43
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.28 E-value=0.029 Score=47.72 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=28.8
Q ss_pred CCCeEEEEecCHHHHHHHHHhh-cCC--CCCcceeeeCCCC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQ-QTR--NPTLWLTEWASEP 356 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~-~~~--~~~~~~v~~AP~P 356 (677)
..|.|||+|.+..+|..|.+.+ ... ....+.|+.|-..
T Consensus 57 ~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~ 97 (107)
T 2cph_A 57 HRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSE 97 (107)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred cCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCC
Confidence 3589999999999999999887 432 3456777777443
No 44
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=96.28 E-value=0.019 Score=46.98 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=27.8
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
+.+||.|.|||.+.++ +.|+++|++. |.+.++.+.+
T Consensus 5 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 40 (89)
T 3ucg_A 5 DARSIYVGNVDYGATA---EELEAHFHGC--GSVNRVTILC 40 (89)
T ss_dssp HHTEEEEESCCTTCCH---HHHHHHHGGG--CCEEEEEEEE
T ss_pred cCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEe
Confidence 3579999999998875 7789999887 5566665554
No 45
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.25 E-value=0.019 Score=48.51 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=56.5
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccc
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMK 277 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r 277 (677)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+..| .
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~-~---------------------------------- 51 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDD---ERLRKAFSPF--GTITSAKVMME-G---------------------------------- 51 (103)
T ss_dssp CSSCCCEEEECCCTTCCH---HHHHHTTTTT--SCEEEEEEEEC-S----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEcC-C----------------------------------
Confidence 346789999999998876 7899999876 45655554422 0
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 278 TGFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 278 ~~~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
.. ..+.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 52 ------------------------------------g~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 52 ------------------------------------GR---SKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp ------------------------------------SS---EEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred ------------------------------------CC---cCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 00 2379999999999999999876543 34567777763
No 46
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.25 E-value=0.02 Score=48.44 Aligned_cols=38 Identities=21% Similarity=0.457 Sum_probs=28.9
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhh-cCCCceeEEEEEe
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLV-NHPNHYLTHQVVV 240 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~-~~p~~v~~v~i~~ 240 (677)
....+||.|.|||.+.++ +.|+++|++ . |.|.++.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~~--G~v~~v~i~~ 44 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDD---GMLYEFFVKVY--PSCRGGKVVL 44 (104)
T ss_dssp SSCCCCEEEECCCTTCCH---HHHHHHHHHHC--TTEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHHhC--CCeEEEEEEE
Confidence 445689999999998876 778899987 5 5566665543
No 47
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.24 E-value=0.011 Score=49.85 Aligned_cols=36 Identities=19% Similarity=0.041 Sum_probs=26.9
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
..|.|||+|.+.++|..|.+.+... ....+.|+.|-
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 53 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 3589999999999999999876543 34456666654
No 48
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=96.24 E-value=0.018 Score=47.78 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=29.2
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
....+||.|.|||.+.++ +.|+++|++. |.|.++.+.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~---~~l~~~F~~~--G~i~~v~i~~ 50 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVRE---EILYELFLQA--GPLTKVTICK 50 (95)
T ss_dssp TTGGGEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEEE
Confidence 456789999999998775 7789999887 5566665543
No 49
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.23 E-value=0.022 Score=49.22 Aligned_cols=54 Identities=9% Similarity=0.099 Sum_probs=35.4
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCCCCeeecccccchhHHHHHH
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQNLAIPYVSLSVRR 375 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~ 375 (677)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-++.+- +|+.....+..++.
T Consensus 47 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~--~~~~~~~~~~~l~~ 102 (115)
T 3lqv_A 47 RGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF--QKMDTKKKEEQLKL 102 (115)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT--TTSCHHHHHHHHHH
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh--hhhhHhHhHHHHHH
Confidence 389999999999999999877654 3456777776533322 45544444443333
No 50
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.22 E-value=0.021 Score=50.70 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=33.8
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCCCCeeec
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQ 362 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DIiW~ 362 (677)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-.++|....
T Consensus 72 rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~ 116 (127)
T 2a3j_A 72 SGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE 116 (127)
T ss_dssp CCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhccc
Confidence 389999999999999999877654 3456788888777776554
No 51
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=96.22 E-value=0.022 Score=52.29 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=57.9
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcccc
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKT 278 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r~ 278 (677)
...+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-. +
T Consensus 37 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~-------------------------------~--- 77 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTE---EQIYELFSKS--GDIKKIIMGLDKM-------------------------------K--- 77 (156)
T ss_dssp TTCCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECTT-------------------------------T---
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC-------------------------------C---
Confidence 45689999999998775 7789999887 4566666554310 0
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCC
Q 005776 279 GFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (677)
Q Consensus 279 ~~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 355 (677)
.. ..+.|||+|.+.++|..|.+.+... ....+.|+.|.+
T Consensus 78 -----------------------------------~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 78 -----------------------------------KT---ACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp -----------------------------------CC---EEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred -----------------------------------Cc---cceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 00 2489999999999999999876543 345577777743
No 52
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.21 E-value=0.022 Score=48.87 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=26.7
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEE
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 238 (677)
...+||.|.|||.+.++ +.|+++|+++ |.|.++.+
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i 47 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEE---EALGEVLQQF--GDLKYVRV 47 (111)
T ss_dssp CCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEEEE
Confidence 45689999999998876 7788999876 45555543
No 53
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.20 E-value=0.01 Score=49.82 Aligned_cols=38 Identities=24% Similarity=0.177 Sum_probs=29.9
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPR 357 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~ 357 (677)
.|.|||+|.+.++|+.|.+.+... ....+.|+.|-.|.
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 57 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 489999999999999999877643 34567788876654
No 54
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.19 E-value=0.031 Score=47.77 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=26.1
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
.+.|||+|++.++|..|.+.+... ....+.|+.|
T Consensus 61 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 61 PPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 489999999999999999876543 3345666665
No 55
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.19 E-value=0.03 Score=47.38 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=29.2
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
....+||.|.|||.+.++ +.|+++|++. + +.++.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--g-i~~v~i~~ 48 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQ---GDIDAIFKDL--S-IRSVRLVR 48 (103)
T ss_dssp SSSCEEEEEESCCTTCCH---HHHHHHTTTS--C-EEEEEEEE
T ss_pred CCCCeEEEEeCCCCCCCH---HHHHHHHHhC--C-ceEEEEee
Confidence 345789999999998876 7899999887 4 66766654
No 56
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.18 E-value=0.031 Score=46.84 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=26.5
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCcee
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYL 234 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~ 234 (677)
....+||.|.|||.+.++ +.|+++|+++.++.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~g~g~v~ 45 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSE---EMIEKEFNNIKPGAVE 45 (99)
T ss_dssp SSCCCEEEEESCCTTCCH---HHHHHHHHTTSTTCEE
T ss_pred cCCcCEEEEeCCCCCCCH---HHHHHHHHhcCCcceE
Confidence 346789999999998775 7788898887655543
No 57
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.15 E-value=0.03 Score=47.01 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=28.9
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPR 357 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~ 357 (677)
+.|||+|++.++|..|.+.+... +...+.|+.|-.+.
T Consensus 52 g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 52 GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 79999999999999999877654 34567788775443
No 58
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=96.13 E-value=0.015 Score=47.49 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=29.6
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
....+||.|.|||.+.++ +.|+++|++. |.+.++.+.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 45 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSK---KDLKDYFTKF--GEVVDCTIKM 45 (87)
T ss_dssp CSCTTEEEEECCCTTCCH---HHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEee
Confidence 456789999999998875 7889999876 5666666554
No 59
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.09 E-value=0.019 Score=45.54 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=24.7
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC-CCCcceeeeC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR-NPTLWLTEWA 353 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~-~~~~~~v~~A 353 (677)
.|.|||+|++..+|..|.+..... +...+.++.|
T Consensus 42 ~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 42 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp SSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 489999999999999998876521 2344555554
No 60
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.08 E-value=0.011 Score=50.12 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=28.4
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 356 (677)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-.+
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 50 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp EEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 489999999999999999876543 3456777776543
No 61
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.08 E-value=0.012 Score=49.69 Aligned_cols=34 Identities=12% Similarity=-0.068 Sum_probs=26.7
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CC-CcceeeeC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NP-TLWLTEWA 353 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~-~~~~v~~A 353 (677)
.|.|||+|.+..+|+.|.+.+... .. ..+.|+.|
T Consensus 54 kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 54 KGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 489999999999999999877654 23 45667666
No 62
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.07 E-value=0.032 Score=49.04 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=26.4
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
.|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 64 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 64 KGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp CSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 489999999999999999876543 3445666665
No 63
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.06 E-value=0.031 Score=47.61 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=29.8
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
....+||.|.|+|.+.++ +.|+++|++. |.|.++.+.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te---~~L~~~F~~~--G~v~~v~i~~ 45 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATL---DDIKEWLEDK--GQVLNIQMRR 45 (103)
T ss_dssp CSGGGCEEEECCCTTCCH---HHHHHHHHTS--SCEEEEEEEC
T ss_pred cCCCCEEEEECCCCCCCH---HHHHHHHhhc--CCEEEEEEEE
Confidence 345789999999998876 7889999887 5677766653
No 64
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.02 E-value=0.032 Score=46.58 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=26.5
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
|.|||+|++..+|+.|.+.+... ....++|+.|-
T Consensus 53 g~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 53 LKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 68999999999999999876543 34556777763
No 65
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=96.02 E-value=0.029 Score=47.74 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=29.4
Q ss_pred CCCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 197 RRPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 197 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
.....++|.|.|||.+.++ +.|+++|++. |.|.++.+.+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 63 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVHY 63 (107)
T ss_dssp CCCCSEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEE
Confidence 3456789999999998775 7788999876 5566665543
No 66
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.01 E-value=0.029 Score=49.86 Aligned_cols=78 Identities=12% Similarity=0.027 Sum_probs=56.0
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcccc
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKT 278 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r~ 278 (677)
...+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|-. +
T Consensus 44 ~~~~~l~V~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~~-------------------------------t--- 84 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVYDQQ-------------------------------S--- 84 (129)
T ss_dssp CCSSCBCEETCTTSCCH---HHHHHHHTTT--SCEEEEEEECCSS-------------------------------S---
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC-------------------------------C---
Confidence 45689999999998876 7789999876 5566665543210 0
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 279 GFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 279 ~~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
.. ..|.|||+|++.++|..|.+.+... +...+.|+.|
T Consensus 85 -----------------------------------g~---~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 85 -----------------------------------RR---SRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp -----------------------------------SC---CCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred -----------------------------------Cc---cceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 00 3489999999999999999876643 3445666665
No 67
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.00 E-value=0.055 Score=44.41 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=26.3
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
+.|||+|++.++|..|.+.+... ....+.|+.|-
T Consensus 43 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 43 NYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 68999999999999999876543 34556777653
No 68
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.99 E-value=0.023 Score=47.55 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=28.9
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEec
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~ 241 (677)
...+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+|
T Consensus 3 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 40 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTE---ETLKGVFSKV--GAIKSCTISKK 40 (98)
T ss_dssp CCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 35689999999998876 7889999877 55666665543
No 69
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=95.98 E-value=0.037 Score=48.59 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=27.1
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
.|.|||+|.+..+|..|.+.+... +...+.|+.|.
T Consensus 76 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 76 LGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 489999999999999999876543 34556777664
No 70
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.98 E-value=0.035 Score=45.66 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=25.9
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
+.|||+|.+..+|..|.+.+... +...+.|+.|-
T Consensus 44 ~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 44 DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 38999999999999999876543 34556777663
No 71
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=95.97 E-value=0.022 Score=51.03 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=26.7
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEE
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 238 (677)
...+||.|.|||.+.++ +.|+++|++. |.+.++.+
T Consensus 61 ~~~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~i 95 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQI 95 (140)
T ss_dssp SSCCEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEC
T ss_pred CCCcEEEEEeCCCCCCH---HHHHHHHHhc--CCEEEEEE
Confidence 45789999999998775 7789999887 45555443
No 72
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=95.97 E-value=0.014 Score=48.18 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=25.2
Q ss_pred CCCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEE
Q 005776 197 RRPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTH 236 (677)
Q Consensus 197 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v 236 (677)
..++.+||.|.|+|.+.++ +.|+++|+++ |.|.++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te---~~L~~~F~~~--G~i~~v 41 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTA---EELQQFFCQY--GEVVDV 41 (89)
T ss_dssp ----CCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEE
Confidence 3466789999999999876 7899999887 445443
No 73
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.96 E-value=0.031 Score=48.08 Aligned_cols=36 Identities=14% Similarity=-0.019 Sum_probs=27.2
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
..|.|||+|.+.++|..|.+.+... ....+.|+.|-
T Consensus 64 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (113)
T 2cpe_A 64 PKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 101 (113)
T ss_dssp BCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSS
T ss_pred eeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECC
Confidence 3589999999999999999876543 34456666653
No 74
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.93 E-value=0.027 Score=48.41 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=26.5
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
.|.|||+|++..+|..|.+.+... +...+.|+.|
T Consensus 69 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 69 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 489999999999999999876544 3445667665
No 75
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=95.91 E-value=0.047 Score=50.43 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=69.6
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccccc
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKTG 279 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r~~ 279 (677)
.++||.|.|||.+.++ +.|+++|++. |.+.++.+.+|..
T Consensus 2 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~~------------------------------------ 40 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSE---KDLRELFEQY--GAVYEINVLRDRS------------------------------------ 40 (175)
T ss_dssp CCEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEECS------------------------------------
T ss_pred CceEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEecCC------------------------------------
Confidence 4689999999998876 7789999887 5576766654311
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCCC-----CCcceeeeCC
Q 005776 280 FLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTRN-----PTLWLTEWAS 354 (677)
Q Consensus 280 ~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~~-----~~~~~v~~AP 354 (677)
.| .+ ...|.|||+|.+..+|..|.+.+.... ...+.+..+.
T Consensus 41 ----~~-----------------------------~~-~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~ 86 (175)
T 3nmr_A 41 ----QN-----------------------------PP-QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPAD 86 (175)
T ss_dssp ----SS-----------------------------SC-EEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECG
T ss_pred ----CC-----------------------------CC-CcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccc
Confidence 00 00 034899999999999999988765432 2334444332
Q ss_pred -------CCCCeeecccccchhHHHHHHHH
Q 005776 355 -------EPRDVYWQNLAIPYVSLSVRRLI 377 (677)
Q Consensus 355 -------~P~DIiW~NL~~~~~~r~~R~~~ 377 (677)
+...|.=.||..+..+..++.++
T Consensus 87 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F 116 (175)
T 3nmr_A 87 SEKNNAVEDRKLFIGMISKKCTENDIRVMF 116 (175)
T ss_dssp GGCCSCGGGSEEEEESCCTTCCHHHHHHHH
T ss_pred ccccccCCCCeEEEcCCCCcCCHHHHHHHH
Confidence 33457778888777666666643
No 76
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.91 E-value=0.011 Score=48.52 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.1
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhc
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (677)
..+||.|.|||.+.++ +.|+++|++.
T Consensus 4 ~~~~l~V~nLp~~~te---~~l~~~F~~~ 29 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTE---DELREFFSQY 29 (88)
T ss_dssp CCCEEEEESCCSSSCH---HHHHHHSTTT
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHHc
Confidence 4689999999998876 7888999876
No 77
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=95.88 E-value=0.038 Score=46.84 Aligned_cols=36 Identities=11% Similarity=-0.054 Sum_probs=27.3
Q ss_pred CCCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEE
Q 005776 197 RRPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQ 237 (677)
Q Consensus 197 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~ 237 (677)
..+.+++|.|.|+|.+.++ +.|++.|+++ |.|.++.
T Consensus 17 ~~~ps~~l~V~NLp~~~te---~~L~~lF~~f--G~V~~v~ 52 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVE---ADLVEALQEF--GPISYVV 52 (100)
T ss_dssp CCCCCSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEEE
Confidence 4556789999999998775 6788888877 5555543
No 78
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.82 E-value=0.042 Score=44.48 Aligned_cols=34 Identities=15% Similarity=0.026 Sum_probs=25.6
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEE
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTH 236 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v 236 (677)
....+||.|.|||.+.++ +.++++|++. |.+.++
T Consensus 9 ~~~~~~l~V~~l~~~~t~---~~l~~~f~~~--G~i~~~ 42 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITE---TDLRNHFYQF--GEIRTI 42 (85)
T ss_dssp CSSCCCEEEECCTTTSCH---HHHHHHHHTT--SCEEEE
T ss_pred CCCccEEEEcCCCCCCCH---HHHHHHHHhC--CCEeEE
Confidence 456789999999998775 7788888876 444443
No 79
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.81 E-value=0.043 Score=45.31 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=25.4
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
+.|||+|++..+|..|.+.+... ....+.|+.|-
T Consensus 45 ~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 45 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 38999999999999998876543 34556676663
No 80
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=95.78 E-value=0.051 Score=52.60 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=69.3
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccccc
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKTG 279 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r~~ 279 (677)
..+||.|.|||.+.+| +.|+++|++. |.|.++.+.+|-. +
T Consensus 14 p~~tlfVgnLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~~-------------------------------t---- 53 (213)
T 4f02_A 14 PMASLYVGDLHPDVTE---AMLYEKFSPA--GPILSIRVCRDMI-------------------------------T---- 53 (213)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECTT-------------------------------T----
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhh--CCEEEEEEecccC-------------------------------C----
Confidence 4579999999998876 7899999987 5677777654310 0
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC---
Q 005776 280 FLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS--- 354 (677)
Q Consensus 280 ~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP--- 354 (677)
.. ..|.|||+|.+..+|..|.+.+... ....+.+..+.
T Consensus 54 ----------------------------------g~---~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~ 96 (213)
T 4f02_A 54 ----------------------------------RR---SLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP 96 (213)
T ss_dssp ----------------------------------CC---EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCT
T ss_pred ----------------------------------CC---ccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccc
Confidence 00 2489999999999999998876543 22334444443
Q ss_pred -----CCCCeeecccccchhHHHHHHHH
Q 005776 355 -----EPRDVYWQNLAIPYVSLSVRRLI 377 (677)
Q Consensus 355 -----~P~DIiW~NL~~~~~~r~~R~~~ 377 (677)
....|.=.||..+..+.-++.++
T Consensus 97 ~~~~~~~~~l~v~nl~~~~t~~~l~~~F 124 (213)
T 4f02_A 97 SLRKSGVGNIFIKNLDKSIDNKALYDTF 124 (213)
T ss_dssp HHHHHCTTEEEEESCCTTCCHHHHHHHH
T ss_pred cccccccccceECCcccccHHHHHHHHH
Confidence 23457778888777666666543
No 81
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.75 E-value=0.063 Score=45.76 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=25.9
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC----CCCcceeeeCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR----NPTLWLTEWAS 354 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~----~~~~~~v~~AP 354 (677)
|.|||+|++..+|..|.+.+... +...+.|+.|-
T Consensus 52 g~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 52 RQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 79999999999999998865432 34556777664
No 82
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.75 E-value=0.064 Score=46.17 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=28.3
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
...+||.|.|||.+.++ +.|+++|+++ |.+.++.+.+
T Consensus 23 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~ 59 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDE---QELENMLKPF--GQVISTRILR 59 (114)
T ss_dssp CCTTEEEEESCCTTCCH---HHHHHTTTTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEE
Confidence 45689999999998875 7899999876 4566665543
No 83
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=95.75 E-value=0.017 Score=48.02 Aligned_cols=34 Identities=21% Similarity=0.097 Sum_probs=25.3
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
.|.|||+|.+.++|..|.+.+... ....+.|+.|
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 57 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 489999999999999999876543 2344555554
No 84
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.75 E-value=0.028 Score=48.42 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=27.1
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
.|.|||+|++.++|+.|.+.+... ....+.|+.|-
T Consensus 63 ~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 63 SASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGT 99 (111)
T ss_dssp CEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCC
T ss_pred CeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence 489999999999999999876543 34456677653
No 85
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.74 E-value=0.048 Score=46.63 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=25.2
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEE
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTH 236 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v 236 (677)
...++|.|.|||.+.++ +.|+++|++. |.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~ 45 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSW---QDLKDHMREA--GDVCYA 45 (108)
T ss_dssp SCCCEEEEESCCSSCCH---HHHHHHHGGG--SCEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEE
Confidence 45789999999998875 7788999876 344443
No 86
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=95.73 E-value=0.018 Score=47.41 Aligned_cols=36 Identities=8% Similarity=-0.068 Sum_probs=25.7
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 356 (677)
.|.|||+|++.+ |..|.+.+... ....+.|+.|..+
T Consensus 43 ~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 43 KGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp CEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred ceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 489999999999 99998876543 3456677776443
No 87
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.73 E-value=0.054 Score=46.30 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=26.8
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 355 (677)
|.|||+|.+..+|..|.+.+... ....+.|+.|-+
T Consensus 62 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 62 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 79999999999999999876543 344566776643
No 88
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.72 E-value=0.041 Score=44.57 Aligned_cols=36 Identities=6% Similarity=0.201 Sum_probs=27.7
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEE
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (677)
...+||.|.|||.+.++ +.|+++|++. |.+.++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~ 38 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTD---QDLVKLCQPY--GKIVSTKAI 38 (85)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHTTSTTT--SCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEE
Confidence 34679999999998876 7899999876 556665554
No 89
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.72 E-value=0.04 Score=47.14 Aligned_cols=35 Identities=17% Similarity=0.050 Sum_probs=26.8
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEE
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQ 237 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~ 237 (677)
.+...+|.|.|||.+.+| +.|+++|+++ |.|.++.
T Consensus 13 ~~~~~~LfV~nLp~~vte---~dL~~lF~~f--G~V~~v~ 47 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTE---GEVISLGLPF--GKVTNLL 47 (105)
T ss_dssp CCCCCEEEECSCCTTSCH---HHHHHHHHHH--CCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEE
Confidence 345789999999998876 6788888877 5555544
No 90
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=95.70 E-value=0.039 Score=47.27 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=27.8
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 356 (677)
+.|||+|.+..+|+.|.+.+... ....+.|+.|-+|
T Consensus 63 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 63 GYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 79999999999999999876543 3456777777433
No 91
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.70 E-value=0.059 Score=44.94 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=27.0
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--C--CCcceeeeCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--N--PTLWLTEWAS 354 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~--~~~~~v~~AP 354 (677)
+.|||+|++.++|+.|.+.+... . ...+.|+.|-
T Consensus 54 g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 54 SFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 79999999999999999876643 3 4567787763
No 92
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.66 E-value=0.072 Score=48.39 Aligned_cols=36 Identities=22% Similarity=0.137 Sum_probs=28.3
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 356 (677)
|.|||+|.+..+|..|.+.+... ....+.|+.|-++
T Consensus 111 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 111 GFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred cEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 89999999999999999876654 3456777776543
No 93
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.66 E-value=0.057 Score=44.83 Aligned_cols=36 Identities=8% Similarity=0.021 Sum_probs=28.0
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 356 (677)
+.|||+|.+..+|..|.+.+... ....+.|+.|.+.
T Consensus 55 ~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 55 AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 34999999999999999876543 3456788887654
No 94
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.65 E-value=0.057 Score=46.45 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=28.7
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~i~~ 49 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGW---KKLKEVFSMA--GVVVRADILE 49 (114)
T ss_dssp CCCCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEE
Confidence 345689999999998875 7889999876 5566655543
No 95
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.64 E-value=0.05 Score=46.18 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=26.0
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEE
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTH 236 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v 236 (677)
.+..++|.|.|||.+.++ +.|+++|+++ |.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te---~~L~~~F~~f--G~v~~v 45 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTE---TEVIALGLPF--GKVTNI 45 (101)
T ss_dssp SSCCSEEEEESCCTTCCH---HHHHHTTTTT--SCEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEE
Confidence 345689999999998775 7788999876 555444
No 96
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=95.63 E-value=0.033 Score=46.38 Aligned_cols=39 Identities=21% Similarity=0.171 Sum_probs=30.3
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCCCCe
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDV 359 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DI 359 (677)
|.|||+|++..+|..|.+.+... ....+.++.|-++.+.
T Consensus 52 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 52 GQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred cEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 79999999999999999876654 3456778887655543
No 97
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.63 E-value=0.042 Score=45.22 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=27.9
Q ss_pred CCCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 197 RRPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 197 ~~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
.....+||.|.|||.+.++ +.|+++|++. .+.++.+.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~---~~l~~~F~~~---~i~~v~i~~ 43 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTE---KNVMEFLAPL---KPVAIRIVR 43 (91)
T ss_dssp CCCCCCEEEEECCCSSCCH---HHHHHHHTTS---CCSEEEEEE
T ss_pred CCCCccEEEEECCCCCCCH---HHHHHHHhhC---CceEEEEEE
Confidence 3456789999999998875 7789999876 344555543
No 98
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=95.62 E-value=0.051 Score=45.94 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=26.2
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 355 (677)
+.|||+|++.++|..|.+.+... ....+.|+.|-+
T Consensus 46 ~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 46 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 48999999999999999876543 344566666643
No 99
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.067 Score=48.79 Aligned_cols=57 Identities=18% Similarity=0.318 Sum_probs=36.8
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC--------CCCCeeecccccchhHHHHHHH
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS--------EPRDVYWQNLAIPYVSLSVRRL 376 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP--------~P~DIiW~NL~~~~~~r~~R~~ 376 (677)
.|.|||+|.+..+|..|.+.+... ....+.++.|. ++..+.=.||.....+.-++..
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 107 (166)
T 3md3_A 41 VNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNA 107 (166)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHH
Confidence 489999999999999999776543 23344555442 2223566677766555555543
No 100
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=95.58 E-value=0.039 Score=46.48 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=25.0
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEE
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 238 (677)
....+||.|.|||.+.++ +.|+++|++. | +.++.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G-i~~v~i 50 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRL 50 (100)
T ss_dssp ----CEEEESCCSSCCSS---SHHHHHSCSS--C-EEEEEC
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--C-CeEEEE
Confidence 346789999999998876 6788999876 5 666554
No 101
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.57 E-value=0.027 Score=47.77 Aligned_cols=38 Identities=8% Similarity=0.112 Sum_probs=29.3
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~ 50 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQ---ETLRSYFSQY--GEVVDCVIMK 50 (105)
T ss_dssp SSSSSEECCBSCCTTCCH---HHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEee
Confidence 346789999999998875 7789999886 5666666554
No 102
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.56 E-value=0.036 Score=47.78 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=27.6
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 355 (677)
+.|||+|.+..+|..|.+.+... ....+.|+.|+.
T Consensus 47 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 47 ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 68999999999999999887654 345567777753
No 103
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=95.50 E-value=0.044 Score=50.47 Aligned_cols=79 Identities=11% Similarity=-0.095 Sum_probs=56.6
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccccc
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKTG 279 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r~~ 279 (677)
..++|.|.|||.+.++ +.|+++|+++.+..+.++.+++|-. +
T Consensus 54 ~~~~lfVgnLp~~~te---~~L~~~F~~~G~i~v~~v~i~~d~~-------------------------------t---- 95 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTD---QQLIQVIRSIGVYDVVELKFAENRA-------------------------------N---- 95 (156)
T ss_dssp --CEEEEECCCTTCCH---HHHHHHHHHTTCCCEEEEEEEECTT-------------------------------T----
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHHCCccEEEEEEEecCC-------------------------------C----
Confidence 4689999999998876 7889999887433677777665410 0
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 280 FLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 280 ~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
| . ..|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 96 -----g-----------------------------~---skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 96 -----G-----------------------------Q---SKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -----C-----------------------------C---EEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred -----C-----------------------------c---cceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 0 0 2489999999999999999887544 3445666666
No 104
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.48 E-value=0.057 Score=47.34 Aligned_cols=35 Identities=17% Similarity=0.050 Sum_probs=26.5
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEE
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQ 237 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~ 237 (677)
.+..++|.|.|||.+.++ +.|+++|+++ |.|.++.
T Consensus 28 ~~ps~~LfVgNLp~~vte---~dL~~lF~~f--G~V~~v~ 62 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTE---GEVISLGLPF--GKVTNLL 62 (119)
T ss_dssp SSCCSEEEEESCCTTCCH---HHHHHHHTTT--SCCCEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEE
Confidence 345789999999998776 7788999876 4555543
No 105
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=95.47 E-value=0.057 Score=48.33 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=28.1
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
..+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+
T Consensus 41 ~~~~l~V~nLp~~~~~---~~l~~~F~~~--G~i~~v~i~~ 76 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDE---VQLRQLFERY--GPIESVKIVC 76 (139)
T ss_dssp TTSEEEEESCSTTCCH---HHHHHHHHHH--SCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEE
Confidence 4589999999998876 6788888887 5666666554
No 106
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.47 E-value=0.058 Score=46.74 Aligned_cols=40 Identities=10% Similarity=0.085 Sum_probs=30.4
Q ss_pred CeEEEEecCHHHHHHHHHhhcC----CCCCcceeeeCCCCCCee
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQT----RNPTLWLTEWASEPRDVY 360 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~----~~~~~~~v~~AP~P~DIi 360 (677)
|.|||+|++.++|..|.+.+.. -....+.|+.|-...++.
T Consensus 63 g~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 63 SQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV 106 (112)
T ss_dssp TEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccccc
Confidence 7999999999999999987642 245567888876655554
No 107
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=95.45 E-value=0.057 Score=50.86 Aligned_cols=42 Identities=14% Similarity=0.039 Sum_probs=31.1
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCCCCeee
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYW 361 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DIiW 361 (677)
.|.|||+|.+..+|..|.+.+... ....+.|+.|..+....|
T Consensus 129 kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~~~~ 172 (177)
T 2f3j_A 129 LGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDLEH 172 (177)
T ss_dssp SCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGGGCC
T ss_pred eeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCC
Confidence 489999999999999999876543 345677888765444333
No 108
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=95.43 E-value=0.039 Score=49.45 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=26.6
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
.|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 89 ~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 89 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp CSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 489999999999999999876543 3455677765
No 109
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.059 Score=44.91 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=26.4
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
|.|||+|.+..+|..|.+.+... ....+.|+.|.
T Consensus 46 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 46 AFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp TEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 79999999999999999876543 24556677663
No 110
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.42 E-value=0.082 Score=45.01 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=26.8
Q ss_pred CCeEEEEecCHHHHHHHHHhhc--CC--CCCcceeeeCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQ--TR--NPTLWLTEWAS 354 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~--~~--~~~~~~v~~AP 354 (677)
.|.|||+|.+..+|..|.+.+. .. ....+.|+.|-
T Consensus 52 ~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~ 90 (109)
T 2dis_A 52 RGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAE 90 (109)
T ss_dssp CCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESC
T ss_pred CcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcC
Confidence 4899999999999999998774 12 34566777663
No 111
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.41 E-value=0.057 Score=45.38 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=28.2
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 356 (677)
.+.|||+|.+.++|..|.+.+... ....+.|+.|-.+
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 54 KGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 489999999999999999876554 3445677776443
No 112
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=95.38 E-value=0.11 Score=49.68 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=38.5
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC-----------------CCCCeeecccccchhHHHHHHHH
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS-----------------EPRDVYWQNLAIPYVSLSVRRLI 377 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP-----------------~P~DIiW~NL~~~~~~r~~R~~~ 377 (677)
.|.|||+|.+.++|..|.+.+... ....+.+..+. ...-|.-.||.....+.-++.++
T Consensus 70 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 146 (216)
T 2qfj_A 70 KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVF 146 (216)
T ss_dssp CSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHH
Confidence 489999999999999999876543 23344554432 22457777777666555555543
No 113
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=95.38 E-value=0.026 Score=44.55 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=18.6
Q ss_pred CCCeEEEEecCHHHHHHHHHh
Q 005776 319 IMPAAFVSFNSRWGAAVCAQT 339 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~ 339 (677)
..|.|||+|++.++|..|.+.
T Consensus 40 ~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 40 RRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp SCCCEEEECSSSHHHHHHHTT
T ss_pred cCCEEEEEECCHHHHHHHHHh
Confidence 358999999999999999875
No 114
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.37 E-value=0.11 Score=43.31 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=29.0
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 356 (677)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-++
T Consensus 56 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 56 RRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 489999999999999999877654 3456778877544
No 115
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.36 E-value=0.038 Score=47.79 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=23.4
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhc
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (677)
....+||.|.|||.+.++ +.|+++|++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~ 39 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITK---MDVLQFLEGI 39 (114)
T ss_dssp CSCCCEEEEESCCTTSCH---HHHHHHTTTS
T ss_pred CCCccEEEEeCcCCcCCH---HHHHHHHHhC
Confidence 345789999999998876 7799999876
No 116
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=95.35 E-value=0.036 Score=43.74 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=17.4
Q ss_pred CCeEEEEecCHHHHHHHHH
Q 005776 320 MPAAFVSFNSRWGAAVCAQ 338 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q 338 (677)
.|.|||+|++.++|+.|.+
T Consensus 41 ~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 41 RGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp CBEEEEECSCHHHHHHHHS
T ss_pred CcEEEEEECCHHHHHHHHH
Confidence 4899999999999999876
No 117
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=95.34 E-value=0.05 Score=47.62 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=27.7
Q ss_pred ceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
.+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+
T Consensus 36 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 70 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTA---QDLEAHFSSC--GSINRITILC 70 (124)
T ss_dssp HTEEEEEEECTTCCH---HHHHHHHHTT--SCEEEEEEEE
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEe
Confidence 579999999998775 7789999887 5666666554
No 118
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.28 E-value=0.063 Score=45.66 Aligned_cols=36 Identities=11% Similarity=0.004 Sum_probs=27.1
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC----CCCcceeeeCCCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR----NPTLWLTEWASEP 356 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~----~~~~~~v~~AP~P 356 (677)
+.|||+|++.++|..|.+.+... ....+.|+.|-..
T Consensus 53 g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 53 NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 57999999999999998876532 3456777776543
No 119
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=95.27 E-value=0.06 Score=46.15 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=26.3
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEE
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (677)
...+||.|.|||.+.++ +.|+++|+++ |.+.++.+.
T Consensus 23 ~~~~~lfV~nLp~~~te---~~L~~~F~~~--G~i~~v~i~ 58 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQ---EGLREYFGQF--GEVKECLVM 58 (109)
T ss_dssp ---CCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHcc--CCeEEEEEE
Confidence 45689999999998876 7789999887 556665544
No 120
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=95.27 E-value=0.072 Score=44.70 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=25.0
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
|.|||+|.+.++|..|.+.+... ....+.|+.|
T Consensus 38 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 38 GFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 79999999999999998876532 3344666655
No 121
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.27 E-value=0.12 Score=48.78 Aligned_cols=103 Identities=8% Similarity=0.085 Sum_probs=67.3
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccc
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMK 277 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r 277 (677)
....+||.|.|||.+.++ +.|+++|+++ |.+.++.+.+|.. +
T Consensus 10 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~~-------------------------------~-- 51 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTD---ESLRSHFEQW--GTLTDCVVMRDPN-------------------------------T-- 51 (196)
T ss_dssp CGGGGEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECTT-------------------------------T--
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEEcCC-------------------------------C--
Confidence 346789999999998876 7889999887 5566666554310 0
Q ss_pred cccccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC-CCCcceeeeCC--
Q 005776 278 TGFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR-NPTLWLTEWAS-- 354 (677)
Q Consensus 278 ~~~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~-~~~~~~v~~AP-- 354 (677)
.. ..|.|||+|.+.++|..|.+..... ....+.+..|.
T Consensus 52 ------------------------------------g~---~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 52 ------------------------------------KR---SRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp ------------------------------------CC---EEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-
T ss_pred ------------------------------------CC---ccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCc
Confidence 00 2489999999999999998762110 12233444432
Q ss_pred ----------CCCCeeecccccchhHHHHHHHH
Q 005776 355 ----------EPRDVYWQNLAIPYVSLSVRRLI 377 (677)
Q Consensus 355 ----------~P~DIiW~NL~~~~~~r~~R~~~ 377 (677)
.+..|.=.||..+..+.-++.++
T Consensus 93 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F 125 (196)
T 1l3k_A 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125 (196)
T ss_dssp ----------CCSEEEEECCTTTCCHHHHHHHH
T ss_pred ccccccccCCCcceEEEeCCCCCCCHHHHHHHH
Confidence 22457777887766666665543
No 122
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=95.23 E-value=0.11 Score=51.83 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=45.5
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCCCCeeecccccchhHHHHHHHH
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQNLAIPYVSLSVRRLI 377 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~ 377 (677)
|.|||+|.+..+|..|.+.+... ....+.++.|.+..-|.=.||..+..+.-++.++
T Consensus 59 g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F 117 (261)
T 3sde_A 59 GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAF 117 (261)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHH
T ss_pred cEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHHH
Confidence 79999999999999998876543 3456788888888889999998777666665543
No 123
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.23 E-value=0.044 Score=47.25 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=26.9
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEE
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (677)
..+||.|.|||.+.++ +.|+++|+++ |.|.++.+.
T Consensus 24 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~ 58 (114)
T 2cq4_A 24 DARTVFCMQLAARIRP---RDLEDFFSAV--GKVRDVRII 58 (114)
T ss_dssp HHTEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEeEEEEE
Confidence 3579999999998775 7789999876 556665543
No 124
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.19 E-value=0.036 Score=47.98 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=23.3
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcC
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNH 229 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~ 229 (677)
...+||.|.|||.+.++ +.|+++|+++.
T Consensus 6 ~~~~~lfVgnLp~~~te---~~L~~~F~~~G 33 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDE---DEITASFRRFG 33 (114)
T ss_dssp SCCCCEEEECCCTTCCH---HHHHHHTTTTC
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHhcC
Confidence 35689999999998876 78999998873
No 125
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.18 E-value=0.065 Score=46.32 Aligned_cols=35 Identities=9% Similarity=0.121 Sum_probs=26.8
Q ss_pred ceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
.+||.|.|||.+.++ +.|+++|+++ |.|.++.+.+
T Consensus 27 ~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~ 61 (116)
T 1x4b_A 27 FRKLFIGGLSFETTE---ESLRNYYEQW--GKLTDCVVMR 61 (116)
T ss_dssp HTEEEEECCTTCCCH---HHHHHHHTSS--CCCSEEEEEC
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEE
Confidence 479999999998876 7789999876 4555655543
No 126
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.17 E-value=0.066 Score=45.36 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=27.2
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
...++|.|.|||.+.++ +.|+++|++.. . +++.+++
T Consensus 13 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G--~-~~v~i~~ 48 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATE---NDIYNFFSPLN--P-MRVHIEI 48 (102)
T ss_dssp SSSCEEEEESCCTTCCH---HHHHHSSCSCC--C-SEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHcC--c-eEEEEEE
Confidence 45689999999998876 78999998764 2 2555553
No 127
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.16 E-value=0.076 Score=48.60 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=26.3
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
.|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 112 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 112 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 489999999999999999876543 3455666665
No 128
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=95.14 E-value=0.091 Score=44.97 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=25.9
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 66 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 66 GFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 79999999999999999876544 3445666665
No 129
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.13 E-value=0.12 Score=43.82 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=23.0
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhc
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (677)
...++|.|.|||.+.++ +.|+++|++.
T Consensus 13 ~~~~~l~V~nLp~~~te---~~l~~~F~~~ 39 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSK---EEIVQFFSGL 39 (104)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHTTTC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc
Confidence 45789999999998876 7899999876
No 130
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=95.07 E-value=0.045 Score=50.24 Aligned_cols=58 Identities=10% Similarity=0.090 Sum_probs=38.2
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCCCCCcceeeeCC------CCCCeeecccccchhHHHHHHHH
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTRNPTLWLTEWAS------EPRDVYWQNLAIPYVSLSVRRLI 377 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~~~~~~~v~~AP------~P~DIiW~NL~~~~~~r~~R~~~ 377 (677)
.|.|||+|.+..+|..|.+....-+...+.+..|. .+..|.=.||..+..+.-++.++
T Consensus 45 ~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F 108 (167)
T 2cjk_A 45 RGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFF 108 (167)
T ss_dssp CSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHH
T ss_pred cceEEEEEccHHHHHHHHhcccccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHH
Confidence 48999999999999999885322233334444442 23357777887776666666543
No 131
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=95.07 E-value=0.091 Score=48.66 Aligned_cols=38 Identities=8% Similarity=0.190 Sum_probs=28.7
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
....+||.|.|||.+.++ +.|+++|+++ |.|.++.+..
T Consensus 69 ~~~~~~l~V~nLp~~~t~---~~L~~~F~~~--G~i~~v~i~~ 106 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQE---DEIQEKFCDY--GEIKNIHLNL 106 (165)
T ss_dssp CC-CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHhhcC--CCEEEEEEEe
Confidence 345689999999998775 7789999887 5666666553
No 132
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=94.98 E-value=0.16 Score=42.42 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=26.4
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
|.|||+|++..+|..|.+.+... ....+.|+.|-
T Consensus 58 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 58 AFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 79999999999999999876543 34556676653
No 133
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=94.93 E-value=0.081 Score=45.80 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=20.1
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR 343 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~ 343 (677)
+.|||+|++.++|+.|.+.+...
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~ 74 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNT 74 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 69999999999999999877643
No 134
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.093 Score=44.00 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=22.6
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhc
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (677)
.+..+||.|.|||.+.++ +.|+++|++.
T Consensus 24 ~~~~~~l~V~nlp~~~~~---~~l~~~f~~~ 51 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATE---ADLIPLFQNF 51 (101)
T ss_dssp CSSCCEEEEESCCTTCCH---HHHHHHHHTT
T ss_pred CCCCCEEEEcCCCcccCH---HHHHHHHHhC
Confidence 345689999999998775 7788888776
No 135
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=94.89 E-value=0.14 Score=43.45 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=28.5
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCC-cceeeeCCCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPT-LWLTEWASEP 356 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~-~~~v~~AP~P 356 (677)
.|.|||+|.+..+|+.|.+.+... ... .+.|+.|-+-
T Consensus 61 ~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 61 KGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp CCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 489999999999999999876543 333 5777777543
No 136
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=94.87 E-value=0.17 Score=49.44 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=25.9
Q ss_pred CcceEEEEecCCC-CCcccHHHHHHHhhhhcCCCceeEEE
Q 005776 199 PDQFTVLVRNVPP-DPDESVSELVEHFFLVNHPNHYLTHQ 237 (677)
Q Consensus 199 ~~~~TVlV~~IP~-~~~~~~~~~l~~~f~~~~p~~v~~v~ 237 (677)
+..+||.|.|||. +.++ +.|+++|+++ |.|.++.
T Consensus 32 ~~~~~l~V~nLp~~~~te---~~L~~~F~~~--G~i~~v~ 66 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTP---QSLFILFGVY--GDVQRVK 66 (229)
T ss_dssp CCCSEEEEESCCTTTCCH---HHHHHHHHHH--TCEEEEE
T ss_pred CCCCEEEEeCCCcccCCH---HHHHHHHHhC--CCeEEEE
Confidence 4578999999999 7775 7788888877 4455443
No 137
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=94.85 E-value=0.15 Score=43.37 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=29.0
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 355 (677)
.|.|||+|.+..+|..|.+.+..+ ....+.++.|++
T Consensus 56 ~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 56 AVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred cEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 489999999999999999988765 345667777764
No 138
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=94.82 E-value=0.074 Score=45.96 Aligned_cols=35 Identities=9% Similarity=-0.071 Sum_probs=27.2
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
.|.|||+|++.++|..|.+.+... +...+.|+.|.
T Consensus 67 rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 67 DGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp SCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 389999999999999999876543 34556777764
No 139
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=94.77 E-value=0.17 Score=51.05 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=46.3
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCCCCeeecccccchhHHHHHHHH
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQNLAIPYVSLSVRRLI 377 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~ 377 (677)
.|.|||+|.+..+|..|.+.+... ....+.++.+|+..-|.=.||..+..+.-++.++
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f 116 (284)
T 3smz_A 57 KGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELV 116 (284)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHH
Confidence 379999999999999999876543 3456778888888889999999887776666544
No 140
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=94.76 E-value=0.095 Score=44.64 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=23.8
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcC
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNH 229 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~ 229 (677)
....++|.|.|||.+.++ +.|+++|++..
T Consensus 8 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~g 36 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTM---EDVLNFFSDCR 36 (107)
T ss_dssp CSSCCEEEEECCCSSCCS---HHHHHHTTTSC
T ss_pred CCCccEEEEeCCCCCCCH---HHHHHHHHhcC
Confidence 346789999999998876 78899998753
No 141
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=94.74 E-value=0.19 Score=48.39 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=25.3
Q ss_pred CcceEEEEecCC-CCCcccHHHHHHHhhhhcCCCceeEEE
Q 005776 199 PDQFTVLVRNVP-PDPDESVSELVEHFFLVNHPNHYLTHQ 237 (677)
Q Consensus 199 ~~~~TVlV~~IP-~~~~~~~~~~l~~~f~~~~p~~v~~v~ 237 (677)
++..||.|.||| .+.++ +.|++.|+++ |.|.++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~---~~L~~~F~~~--G~v~~v~ 36 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNC---DRVFNVFCLY--GNVEKVK 36 (205)
T ss_dssp CCCSEEEEECCCTTTCCH---HHHHHHHTTT--SCEEEEE
T ss_pred CCCCEEEEeCCCcccCCH---HHHHHHHHhc--CCeEEEE
Confidence 346799999999 67765 6788899876 5555543
No 142
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=94.72 E-value=0.074 Score=47.20 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=23.1
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcC
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNH 229 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~ 229 (677)
....||.|.|||.+.++ +.|+++|+++.
T Consensus 21 ~~~~~lfV~nL~~~~te---~~L~~~F~~~G 48 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTM---DSILGALAPYA 48 (131)
T ss_dssp CCCCEEEECSCCTTCCS---HHHHHHHGGGC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHhC
Confidence 35679999999998876 78889998773
No 143
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=94.49 E-value=0.15 Score=48.23 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=21.6
Q ss_pred cceEEEEecCCC-CCcccHHHHHHHhhhhc
Q 005776 200 DQFTVLVRNVPP-DPDESVSELVEHFFLVN 228 (677)
Q Consensus 200 ~~~TVlV~~IP~-~~~~~~~~~l~~~f~~~ 228 (677)
+++||.|.|||. +.++ +.|+++|++.
T Consensus 2 ~~~~l~v~nlp~~~~~~---~~l~~~F~~~ 28 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTP---QSLFILFGVY 28 (198)
T ss_dssp CCCEEEEECCCSSSCCH---HHHHHHHHTT
T ss_pred CCcEEEEeCCCcccCCH---HHHHHHHHhc
Confidence 468999999999 7775 7788888876
No 144
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=94.39 E-value=0.18 Score=45.90 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=28.6
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
....++|.|.|+|.+.++ +.|+++|++. |.+.++.+.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~~ 121 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDD---ETLRNAFKDF--PSYLSGHVMW 121 (166)
T ss_dssp CTTCEEEEEESCCTTCCH---HHHHHHHTTS--TTEEEEEEEE
T ss_pred CCCCceEEECCCCCCCCH---HHHHHHHhcc--CCeeEEEEEe
Confidence 345789999999998775 7888999876 5566665543
No 145
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.35 E-value=0.056 Score=47.44 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=24.6
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
.|.|||+|.+..+|..|.+ +... ....+.|..|
T Consensus 67 ~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 67 TGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp EEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4899999999999999998 4332 2345566665
No 146
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=94.35 E-value=0.09 Score=47.21 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=28.1
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCC-ceeEEEEEe
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPN-HYLTHQVVV 240 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~-~v~~v~i~~ 240 (677)
...++|.|.|||.+.++ +.|+++|++..+. .+.++.+++
T Consensus 42 ~~~~~lfVgnLp~~~te---~dL~~~F~~~G~v~~v~~v~i~~ 81 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSV---EDVQNFLSDCTIHDGAAGVHFIY 81 (136)
T ss_dssp CTTCEEEEESCCTTCCH---HHHHHHTTTCCCSSSSTTEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHhCCcCceeEEEEEE
Confidence 45689999999998876 7899999887431 144555544
No 147
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=94.24 E-value=0.11 Score=51.16 Aligned_cols=80 Identities=11% Similarity=-0.027 Sum_probs=56.4
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCccccc
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKTG 279 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r~~ 279 (677)
..+||.|.|||.+.++ +.|+++|+++....|.++.+.+|-. +
T Consensus 67 ~~~~lfVgnL~~~~te---~~L~~~F~~~G~~~v~~v~i~~d~~-------------------------------t---- 108 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFENRA-------------------------------N---- 108 (229)
T ss_dssp --CEEEEESCCTTCCH---HHHHHHHHTTTCCCEEEEEEEECTT-------------------------------T----
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHHHCCcceEEEEEEecCC-------------------------------C----
Confidence 4579999999998876 7889999887322677777765410 0
Q ss_pred cccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 280 FLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 280 ~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
.. ..|.|||+|++..+|+.|.+.+... ....+.|+.|-
T Consensus 109 ----------------------------------g~---skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 109 ----------------------------------GQ---SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp ----------------------------------CC---EEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred ----------------------------------Cc---cceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 00 2389999999999999999876543 34456777664
No 148
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=94.22 E-value=0.18 Score=48.23 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=28.3
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
..++|.|.|||.+.++ +.|+++|+++ |.|.++.+..
T Consensus 124 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~ 159 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSD---DDIKSVFEAF--GKIKSATLAR 159 (216)
T ss_dssp TSCEEEEECCCTTCCH---HHHHHHHTTS--SCEEEEEEEE
T ss_pred CCcEEEEeCCCCcCCH---HHHHHHHhcc--CCeeEEEEEe
Confidence 4579999999998775 7889999886 5666666654
No 149
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.20 E-value=0.098 Score=44.99 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=26.0
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEE
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (677)
..++|.|.|||.+.++ +.|+++|++. .+.++.++
T Consensus 15 ~~~~v~V~nLp~~~te---~dl~~~F~~~---~v~~v~i~ 48 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAME---NDVRDFFHGL---RVDAVHLL 48 (109)
T ss_dssp HHHEEEEECCCSSCCH---HHHHHHTTTS---CCCEEEEC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHhccC---CeeEEEEE
Confidence 4589999999998876 7899999876 24455544
No 150
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=94.17 E-value=0.25 Score=45.06 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=27.9
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
...++|.|.|+|.+.++ +.|+++|++. |.+.++.+.+
T Consensus 87 ~~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~~ 123 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITD---DQLDTIFGKY--GSIVQKNILR 123 (168)
T ss_dssp TTTCEEEEESCCTTCCH---HHHHHHHTSS--SCEEEEEEEE
T ss_pred CCCCCEEEeCCCCCCCH---HHHHHhhhcC--CcEEEEEEEE
Confidence 45689999999998775 7889999876 4565655543
No 151
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=94.05 E-value=0.14 Score=40.90 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=20.6
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR 343 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~ 343 (677)
.|.|||+|.+..+|..|.+.+...
T Consensus 47 ~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 47 KGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CCEEEEEESSHHHHHHHHTTSSSC
T ss_pred eEEEEEEECCHHHHHHHHHHhcCc
Confidence 489999999999999999876543
No 152
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=93.84 E-value=0.28 Score=45.00 Aligned_cols=36 Identities=6% Similarity=0.097 Sum_probs=27.7
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEE
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (677)
...++|.|.|+|.+.++ +.|+++|+++ |.+.++.+.
T Consensus 93 ~~~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~v~~~ 128 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTE---NDIRVMFSSF--GQIEECRIL 128 (175)
T ss_dssp GGGSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCeEEEcCCCCcCCH---HHHHHHHHhC--CCEEEEEEE
Confidence 35689999999998775 7789999877 456666554
No 153
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.74 E-value=0.36 Score=39.76 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=22.5
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhc
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (677)
...++|.|.|||.+.++ +.|+++|++.
T Consensus 6 ~~~~~l~V~nl~~~~t~---~~l~~~F~~~ 32 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDS---AQLSEYFLAF 32 (94)
T ss_dssp TTCCEEEEECCCTTCCH---HHHHHHGGGT
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhc
Confidence 35679999999998876 7889999876
No 154
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=93.67 E-value=0.094 Score=47.26 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.0
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcC
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNH 229 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~ 229 (677)
...+||.|.|||.+.++ +.|+++|+++.
T Consensus 44 ~~~~~lfV~nLp~~~te---~dL~~~F~~~G 71 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATE---NDIYNFFSPLN 71 (139)
T ss_dssp -CCCCEECCSCCTTCCH---HHHHHHHCSCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC
Confidence 45689999999998876 78999998763
No 155
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=93.59 E-value=0.36 Score=39.69 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=26.5
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
|.|||+|.++.+|..|.+.+... ....++|+.|
T Consensus 44 GfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 44 GIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 89999999999999999887643 3445677777
No 156
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=93.50 E-value=0.19 Score=44.42 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=23.1
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhc
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (677)
...++|.|.|||.+.++ +.|+++|+++
T Consensus 40 ~~~~~lfVgnLp~~~te---~dL~~~F~~~ 66 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTK---EEIVQFFSGL 66 (126)
T ss_dssp SSCCEEEEECCCTTCCH---HHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHhcC
Confidence 45689999999998876 7899999876
No 157
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=93.43 E-value=0.34 Score=43.93 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=27.5
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
...++|.|.|+|.+.++ +.|+++|++. |.+.++.+.+
T Consensus 86 ~~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~~ 122 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQ---KELEQLFSQY--GRIITSRILV 122 (167)
T ss_dssp GTTCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCcEEECCCCCcCCH---HHHHHHHHhc--CCEeEEEEEe
Confidence 34679999999998765 7788999877 4555555543
No 158
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=93.33 E-value=0.14 Score=48.88 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=27.7
Q ss_pred ceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
.+||.|.|+|.+.++ +.|+++|++. |.|.++.+.+
T Consensus 109 ~~~l~V~nLp~~~t~---~~L~~~F~~~--G~v~~v~i~~ 143 (193)
T 2voo_A 109 NRSVYIKGFPTDATL---DDIKEWLEDK--GQVLNIQMRR 143 (193)
T ss_dssp HTEEEEECCCTTCCH---HHHHHHHTTS--CCEEEEEEEE
T ss_pred cCEEEecCCCCcCCH---HHHHHHHhcC--CCEEEEEEEE
Confidence 479999999998765 7899999887 5566666554
No 159
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=92.93 E-value=0.22 Score=45.66 Aligned_cols=37 Identities=11% Similarity=0.260 Sum_probs=27.9
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
...++|.|.|+|.+.++ +.|+++|++. |.+.++.+.+
T Consensus 92 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~ 128 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLVK 128 (172)
T ss_dssp TTTTCEEEECCCTTCCH---HHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCEEEEEcCCCcCCH---HHHHHHHHhc--CCceEEEEEe
Confidence 34689999999998775 7788999876 5566665543
No 160
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=92.68 E-value=0.12 Score=52.12 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=31.0
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecc
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNA 242 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~ 242 (677)
.+.+.+|.|.|+|.+.++ +.|+++|++. |.+.++.+.+|-
T Consensus 92 ~~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~~ 131 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQ---QQFEELVRPF--GSLERCFLVYSE 131 (284)
T ss_dssp CCCSCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT
T ss_pred cCCCCEEEEcCCCCcCCH---HHHHHHHHhc--CCeeEEEEEeeC
Confidence 356789999999998875 7888999886 556777776653
No 161
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=92.58 E-value=0.59 Score=47.14 Aligned_cols=99 Identities=17% Similarity=0.228 Sum_probs=67.7
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcccc
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKT 278 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r~ 278 (677)
...+||.|.|||.+.++ +.|+++|+++ |.|.++.+..|.
T Consensus 39 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~------------------------------------ 77 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQ---NKVYKYFKHC--GPIIHVDVADSL------------------------------------ 77 (292)
T ss_dssp ---CEEEEEEECTTCCH---HHHHHHHGGG--SCEEEEEEEECT------------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC------------------------------------
Confidence 45789999999998876 7789999887 556666554320
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCC
Q 005776 279 GFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (677)
Q Consensus 279 ~~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P 356 (677)
.. ..|.|||+|.+..+|..|.+ +... ....+.++.+ ++
T Consensus 78 -----------------------------------~~---~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~-~~ 117 (292)
T 2ghp_A 78 -----------------------------------KK---NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL-TE 117 (292)
T ss_dssp -----------------------------------TS---SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC-CS
T ss_pred -----------------------------------CC---CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC-CC
Confidence 00 13899999999999999985 3222 2334566665 35
Q ss_pred CCeeecccccchhHHHHHHHHH
Q 005776 357 RDVYWQNLAIPYVSLSVRRLIM 378 (677)
Q Consensus 357 ~DIiW~NL~~~~~~r~~R~~~~ 378 (677)
.-|.=.||.....+.-++.++.
T Consensus 118 ~~l~v~nlp~~~t~~~l~~~f~ 139 (292)
T 2ghp_A 118 CTLWMTNFPPSYTQRNIRDLLQ 139 (292)
T ss_dssp CEEEEECCCTTCCHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHH
Confidence 6677789987777766666543
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=92.53 E-value=0.38 Score=46.32 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=27.7
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
...+|.|.|+|.+.++ +.|+++|+++ |.|.++.+.+
T Consensus 102 ~~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~~~i~~ 137 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVC 137 (213)
T ss_dssp CTTEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred ccccceECCcccccHH---HHHHHHHhhc--CCeEEEEeec
Confidence 3468999999998876 7889999887 5666666554
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=92.48 E-value=0.37 Score=45.20 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=28.2
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
...++|.|.|||.+.++ +.|+++|+++ |.|.++.+.+
T Consensus 102 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 138 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEE---HHLRDYFEQY--GKIEVIEIMT 138 (196)
T ss_dssp -CCSEEEEECCTTTCCH---HHHHHHHTTT--SCEEEEEEEE
T ss_pred CCcceEEEeCCCCCCCH---HHHHHHHhcC--CCeEEEEEee
Confidence 45589999999998775 7889999876 5666666554
No 164
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=92.34 E-value=0.49 Score=44.40 Aligned_cols=79 Identities=10% Similarity=0.068 Sum_probs=56.1
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcccc
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKT 278 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~le~~~~k~~~~~~~rp~~r~ 278 (677)
...++|.|.|+|.+.++ +.|+++|++. |.+.++.+.+|.. +
T Consensus 112 ~~~~~l~v~nl~~~~~~---~~l~~~f~~~--G~v~~~~~~~~~~-------------------------------~--- 152 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLVKDSA-------------------------------T--- 152 (198)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHHHTB--SCEEEEEEEECTT-------------------------------T---
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHc--CCccEEEEeecCC-------------------------------C---
Confidence 45689999999998765 7788999876 5566655543310 0
Q ss_pred ccccCCCcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 279 GFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 279 ~~~~~~g~kvDai~~~~~~l~~l~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
.. ..|.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 153 -----------------------------------~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 153 -----------------------------------GL---SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp -----------------------------------CS---EEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred -----------------------------------CC---cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 00 2489999999999999999876554 34456777663
No 165
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=92.26 E-value=1.2 Score=40.68 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=37.3
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC------CCCCeeecccccchhHHHHHHHH
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS------EPRDVYWQNLAIPYVSLSVRRLI 377 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP------~P~DIiW~NL~~~~~~r~~R~~~ 377 (677)
|.|||+|.+.++|..|. .+... ....+.++.+. .+.-|.=.||..+..+.-++..+
T Consensus 52 g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 115 (172)
T 2g4b_A 52 NFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELL 115 (172)
T ss_dssp TEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHH
Confidence 89999999999999998 44332 23334454432 23557777888776666666544
No 166
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=91.89 E-value=0.41 Score=51.70 Aligned_cols=42 Identities=10% Similarity=0.117 Sum_probs=30.0
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCCCCeee
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYW 361 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DIiW 361 (677)
.|.|||+|.+..+|..|.+.+... ....+.|+.|.....=-|
T Consensus 144 kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~~~~ 187 (437)
T 3pgw_S 144 RGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGW 187 (437)
T ss_pred cceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCCCCC
Confidence 489999999999999999887654 334566777654333334
No 167
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=91.82 E-value=1.1 Score=44.75 Aligned_cols=36 Identities=11% Similarity=0.144 Sum_probs=23.9
Q ss_pred CcceEEEEecCCCCCcc-cHHHHHHHhhhhcCCCceeEE
Q 005776 199 PDQFTVLVRNVPPDPDE-SVSELVEHFFLVNHPNHYLTH 236 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~-~~~~~l~~~f~~~~p~~v~~v 236 (677)
...+||.|.|||.+.++ .+++.|.++|+++ |.|.++
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~--G~i~~v 43 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQF--GQILDI 43 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhcc--CCeEEE
Confidence 45689999999998765 3333355777765 444443
No 168
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=90.80 E-value=0.035 Score=48.10 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=25.5
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
.|.|||+|.+..+|+.|.+.+... ....+.|+.|-
T Consensus 57 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (116)
T 2lcw_A 57 KGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 93 (116)
Confidence 489999999999999998865543 23445566553
No 169
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=91.13 E-value=0.53 Score=42.81 Aligned_cols=34 Identities=15% Similarity=0.018 Sum_probs=25.3
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcC--CCCCcceeeeC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQT--RNPTLWLTEWA 353 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~--~~~~~~~v~~A 353 (677)
..|.|||+|++..+|..|.+ ... -....+.|+.|
T Consensus 128 ~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 128 SRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp TSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred cceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 35899999999999999988 321 13456677776
No 170
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=90.98 E-value=0.63 Score=39.39 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=28.4
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
..|.|||+|++..+|+.|.+.+... ....+.++.+|
T Consensus 67 ~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred ccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 4689999999999999999887654 34456677766
No 171
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=90.73 E-value=0.7 Score=43.52 Aligned_cols=35 Identities=9% Similarity=0.041 Sum_probs=26.6
Q ss_pred CeEEEEecCHHHHHHHHHhhcCCC---CCcceeeeCCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTRN---PTLWLTEWASE 355 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~~---~~~~~v~~AP~ 355 (677)
|.|||+|.+..+|..|.+.+.... ...+.++.|-.
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 799999999999999998876542 34556666543
No 172
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=90.33 E-value=0.95 Score=45.29 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=24.8
Q ss_pred CeEEEEecCHHHHHHHHHhhcCCC---CCcceeeeC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTRN---PTLWLTEWA 353 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~~---~~~~~v~~A 353 (677)
|.|||+|++..+|..|.+.+.... ...++|+.|
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 799999999999999998876542 334555543
No 173
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=90.24 E-value=1.5 Score=40.97 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=20.7
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhc
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (677)
.++||.|.|||.+.++ +.|+++|++.
T Consensus 3 ~~~~l~V~nLp~~~te---~~l~~~F~~~ 28 (198)
T 2yh0_A 3 MARRLYVGNIPFGITE---EAMMDFFNAQ 28 (198)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHHHH
T ss_pred ceeEEEEcCCCCCCCH---HHHHHHHHHH
Confidence 4689999999998875 6788888765
No 174
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.16 E-value=0.91 Score=38.72 Aligned_cols=45 Identities=22% Similarity=0.039 Sum_probs=34.7
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCCCCeeecc
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQN 363 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~DIiW~N 363 (677)
..|.|||+|.+..+|..|.+.+... ....+.++.|.+..|..++.
T Consensus 63 ~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 63 PDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp TTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred CCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence 4699999999999999999877654 34567888887666655544
No 175
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=90.00 E-value=1.2 Score=43.09 Aligned_cols=35 Identities=9% Similarity=0.041 Sum_probs=26.8
Q ss_pred CeEEEEecCHHHHHHHHHhhcCCC---CCcceeeeCCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTRN---PTLWLTEWASE 355 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~~---~~~~~v~~AP~ 355 (677)
|.|||+|++.++|..|.+.+.... ...+.++.|-.
T Consensus 190 g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 190 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred cEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 799999999999999998776542 44566666643
No 176
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=89.48 E-value=1.1 Score=44.14 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.0
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR 343 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~ 343 (677)
|.|||+|.+..+|..|.+.+...
T Consensus 180 G~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 180 NCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCHHHHHHHHHHhCCC
Confidence 79999999999999998876543
No 177
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=89.38 E-value=1.6 Score=40.22 Aligned_cols=34 Identities=9% Similarity=0.080 Sum_probs=27.3
Q ss_pred CeEEEEecCHHHHHHHHHhhcCCCC----CcceeeeCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTRNP----TLWLTEWAS 354 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~~~----~~~~v~~AP 354 (677)
+.|||+|++.++|..|.+.+....- ..++|+.|-
T Consensus 85 gfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 85 FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 6899999999999999998765432 567777764
No 178
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=88.77 E-value=1.3 Score=43.96 Aligned_cols=36 Identities=28% Similarity=0.281 Sum_probs=27.9
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
+..+|.|.|+|.+.++ +.|+++|+++ |.|.++.+.+
T Consensus 95 ~~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~v~i~~ 130 (261)
T 3sde_A 95 HGAALTVKNLSPVVSN---ELLEQAFSQF--GPVEKAVVVV 130 (261)
T ss_dssp CSSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred cCCcccccCCCCCCCH---HHHHHHHHhc--CCeEEEEeee
Confidence 4579999999998765 7889999877 5666666554
No 179
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=87.85 E-value=0.84 Score=39.41 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhhcC------CCCCCCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 297 EIEKLSKEIAEERERVVS------DPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 297 ~l~~l~~~I~~~r~~~~~------~~~~~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
..+++++++.++=++... ......|.|||+|++..+|..|.+.+..+ ....+.++.+|
T Consensus 26 ~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 26 WDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 345666666665554321 01113599999999999999999988765 34456666664
No 180
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=87.84 E-value=1.9 Score=38.12 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=27.3
Q ss_pred eEEEEecCHHHHHHHHHhhcCCC----CCcceeeeCCCC
Q 005776 322 AAFVSFNSRWGAAVCAQTQQTRN----PTLWLTEWASEP 356 (677)
Q Consensus 322 ~AFVtF~s~~~a~~~~q~~~~~~----~~~~~v~~AP~P 356 (677)
.|||+|.+..+|..|.+.+.... ...++++.|..+
T Consensus 68 qAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 68 QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 59999999999999999887653 245677777543
No 181
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.88 E-value=0.93 Score=38.11 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=27.9
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCCCCCcceeeeCC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTRNPTLWLTEWAS 354 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~~~~~~~v~~AP 354 (677)
..|.|||+|++..+|..|.+.........++|+.|-
T Consensus 53 ~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 53 KPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 88 (100)
T ss_dssp SSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence 358999999999999999987554445567777763
No 182
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=86.85 E-value=1.6 Score=36.96 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=28.8
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 355 (677)
..|.|||+|++..+|..|.+.+..+ ....++++.+|+
T Consensus 58 ~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 58 GCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 4689999999999999999988765 344566666653
No 183
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=85.91 E-value=0.47 Score=38.48 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=29.8
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCCCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPR 357 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~P~ 357 (677)
.|.|||+|.+..+|..|.+.+... ....+.|+.||...
T Consensus 40 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 40 KRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp GTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 389999999999999999877543 44567788887643
No 184
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=85.36 E-value=1.7 Score=41.54 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=21.0
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR 343 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~ 343 (677)
.|.|||.|++.++|..|.+.+...
T Consensus 165 ~g~gfV~f~~~~~A~~Ai~~lng~ 188 (205)
T 3tyt_A 165 SSSGLLEWDSKSDALETLGFLNHY 188 (205)
T ss_dssp SEEEEEECSSHHHHHHHHHHHTTC
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCC
Confidence 389999999999999999887653
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=85.21 E-value=3 Score=41.78 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=38.1
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC-------------CCCCeeecccccc-hhHHHHHHHH
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS-------------EPRDVYWQNLAIP-YVSLSVRRLI 377 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP-------------~P~DIiW~NL~~~-~~~r~~R~~~ 377 (677)
.|.|||+|.+..+|..|.+.+... ....+.++.|. ...-|.=.||... ..+.-++.++
T Consensus 159 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F 232 (292)
T 2ghp_A 159 RRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESF 232 (292)
T ss_dssp CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHH
Confidence 489999999999999999876543 22334444431 2245677788766 5555555543
No 186
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=83.70 E-value=2.7 Score=34.67 Aligned_cols=35 Identities=11% Similarity=-0.103 Sum_probs=26.8
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
..|.|||+|.+..+|..|.+ +... ....+.|+.|-
T Consensus 57 ~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 57 NRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred cCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 45899999999999999998 5543 34556777663
No 187
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=83.02 E-value=1.4 Score=36.67 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=30.2
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEec
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~ 241 (677)
....+||.|.|||.+.++ +.|+++|++. |.|.++.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 44 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDE---TEIRSFFARY--GSVKEVKIITD 44 (102)
T ss_dssp EEEEEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEEEC
Confidence 345789999999998775 7789999887 56777766543
No 188
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.09 E-value=1.3 Score=38.82 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=30.7
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCC--CceeEEEEEec
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHP--NHYLTHQVVVN 241 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p--~~v~~v~i~~~ 241 (677)
...++|.|.|||.+.++ +.|+++|+++.+ +.+.++.+++|
T Consensus 21 ~~~~~v~V~nLp~~~te---~dl~~~F~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATA---EEVVAFFGQHCPITGGKEGILFVTY 62 (123)
T ss_dssp CSCCEEEECSCCTTCCH---HHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhhCCccCCcceEEEEEC
Confidence 44689999999998876 789999998755 34566776654
No 189
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.23 E-value=1.7 Score=36.00 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=27.2
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
..+.|||+|++.++|+.|.+.+... ....+.|+.|-
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp BCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 3589999999999999999876543 34456676653
No 190
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.78 E-value=2.5 Score=35.81 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=27.7
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
..|.|||+|.+..+|..|.+.+... ....+.|+.|-
T Consensus 66 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 66 MRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp SCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 3589999999999999999876543 34556777663
No 191
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.65 E-value=1.7 Score=35.41 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=26.9
Q ss_pred CeEEEEecCHHHHHHHHHhhcC-C--CCCcceeeeCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQT-R--NPTLWLTEWAS 354 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~-~--~~~~~~v~~AP 354 (677)
+.|||+|++.++|..|.+.+.. . ....+.|+.|-
T Consensus 45 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 45 GYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp TEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 8999999999999999987765 2 34556777664
No 192
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=79.10 E-value=1.4 Score=36.16 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=27.3
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
.|.|||+|.+..+|..|.+.+... ....+.|+.|.
T Consensus 53 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 53 KGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 489999999999999999876543 34557777774
No 193
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.10 E-value=2 Score=35.32 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=26.7
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
.|.|||+|++..+|..|.+.+... ....+.|+.|-
T Consensus 49 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 49 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 489999999999999999876543 34456676664
No 194
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=78.37 E-value=2.3 Score=36.56 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=29.7
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhcCCC-ceeEEEEEec
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPN-HYLTHQVVVN 241 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~-~v~~v~i~~~ 241 (677)
...+||.|.|||.+.++ +.|+++|+++.+. .|.++.+++|
T Consensus 15 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G~~~~v~~v~i~~~ 55 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSI---EDVQNFLSDCTIHDGVAGVHFIYT 55 (118)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHTTTSCBTTGGGGEEEEEC
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHcCCccCceeEEEEEC
Confidence 45689999999998876 7899999887431 2566666654
No 195
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=73.96 E-value=4.5 Score=34.93 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=27.6
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 355 (677)
.|.|||+|++..+|..|.+.+... ....+.|+.|-.
T Consensus 73 kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 73 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 489999999999999999876543 345567776643
No 196
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=70.22 E-value=2.6 Score=36.42 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=28.8
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 355 (677)
.|.|||+|.+..+|..|.+.+..+ ....+.++.+|+
T Consensus 71 ~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 71 IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred eEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 489999999999999999988765 345567777764
No 197
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=65.33 E-value=8.1 Score=34.99 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=39.6
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCC--------CCCeeecccccchhHHHHHHHHH
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE--------PRDVYWQNLAIPYVSLSVRRLIM 378 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~--------P~DIiW~NL~~~~~~r~~R~~~~ 378 (677)
..|.|||+|.+.++|..|.+ +... ....+.++.|.+ ..-|.=.||..+..+.-++.++.
T Consensus 53 ~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 121 (175)
T 1fje_B 53 NRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE 121 (175)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCT
T ss_pred cccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHH
Confidence 35899999999999999996 4322 234455655532 23477788887766666666543
No 198
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=64.32 E-value=9.3 Score=33.26 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=28.9
Q ss_pred C-eEEEEecCHHHHHHHHHhhcCCCC----CcceeeeCCCCC
Q 005776 321 P-AAFVSFNSRWGAAVCAQTQQTRNP----TLWLTEWASEPR 357 (677)
Q Consensus 321 ~-~AFVtF~s~~~a~~~~q~~~~~~~----~~~~v~~AP~P~ 357 (677)
| .|||+|++..+|..|.+.+....- ..++|+.|-.++
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 6 599999999999999998876542 357788775444
No 199
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=64.00 E-value=7.4 Score=30.73 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=21.4
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhc
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (677)
..+||.|.|||.+.++ +.++++|++.
T Consensus 5 ~~~~l~V~nLp~~~t~---~~l~~~F~~~ 30 (87)
T 2hzc_A 5 SARRLYVGNIPFGITE---EAMMDFFNAQ 30 (87)
T ss_dssp GGGEEEEESCCTTCCH---HHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHH
Confidence 4689999999998775 6788888766
No 200
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=63.64 E-value=5.3 Score=31.96 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=25.6
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEE
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i 238 (677)
+.+||.|.|||.+.++ +.++++|++. .+.++.+
T Consensus 4 ~~~~l~V~nLp~~~t~---~~l~~~F~~~---~v~~~~i 36 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNC---QEVHDLLKDY---DLKYCYV 36 (88)
T ss_dssp CCCCEEEESCCSSCCH---HHHHHHTCSS---CCCCEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHhhC---CeEEEEE
Confidence 4689999999998876 7899999887 3445544
No 201
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=62.44 E-value=4.8 Score=35.63 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=26.4
Q ss_pred CCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
.|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 92 ~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 92 KGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred ccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 489999999999999999876543 3345666665
No 202
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.08 E-value=5.3 Score=34.29 Aligned_cols=23 Identities=13% Similarity=0.201 Sum_probs=20.6
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR 343 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~ 343 (677)
|.|||+|++.++|..|.+.+...
T Consensus 64 gfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 64 PYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp SCEEEEESSHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 79999999999999999887654
No 203
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.92 E-value=9.9 Score=31.89 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=26.6
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhh---cCCCceeEEE
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLV---NHPNHYLTHQ 237 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~---~~p~~v~~v~ 237 (677)
...+|.|+|+|++.++ +.++-||++ ...|.|.++.
T Consensus 7 ~~~~I~V~~lPp~~~~---e~L~LYFEn~rrsGGG~V~~v~ 44 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPD---ELLTLYFENRRRSGGGPVLSWQ 44 (104)
T ss_dssp CCCEEEEESCCTTSCH---HHHHHHHHCTTTTCCCCEEEEE
T ss_pred CccEEEEECCCCCCCh---hHheEEEeCCCcCCCceeeEEE
Confidence 3579999999998875 789999988 3455666543
No 204
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=59.91 E-value=6.7 Score=31.02 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=19.0
Q ss_pred CCeEEEEecCHHHHHHHHHhhcC
Q 005776 320 MPAAFVSFNSRWGAAVCAQTQQT 342 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q~~~~ 342 (677)
.|.|||+|++.++|..|. .+..
T Consensus 53 kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 53 KNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp SSEEEEEESSHHHHHHHG-GGTT
T ss_pred CcEEEEEcCCHHHHHHHH-hcCC
Confidence 589999999999999998 5543
No 205
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=59.45 E-value=7 Score=35.42 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=27.9
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP 354 (677)
..|.|||+|.+..+|..|.+.+... ....+.|+.|.
T Consensus 135 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 135 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred CceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 5689999999999999999876543 34456777763
No 206
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=57.67 E-value=29 Score=29.24 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=20.7
Q ss_pred ccccCCCcccCH------HHHHHHHHHHHHHHHHHHHHh
Q 005776 279 GFLGLWGEKVDG------IDYHISEIEKLSKEIAEERER 311 (677)
Q Consensus 279 ~~~~~~g~kvDa------i~~~~~~l~~l~~~I~~~r~~ 311 (677)
+.|+.||..++. ++.+++++++++.++.+.+.+
T Consensus 48 ~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~ 86 (112)
T 1l8d_A 48 GKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDR 86 (112)
T ss_dssp EECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889877654 566666666666666555443
No 207
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=57.05 E-value=5.7 Score=34.01 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=18.5
Q ss_pred CCCeEEEEecCHHHHHHHHH
Q 005776 319 IMPAAFVSFNSRWGAAVCAQ 338 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q 338 (677)
..|.|||+|+++.+|..|.+
T Consensus 60 ~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 60 QSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp EEEEEEEEBSSHHHHHHHGG
T ss_pred CCeEEEEEECCHHHHHHHHh
Confidence 46899999999999999998
No 208
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.52 E-value=10 Score=30.95 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=23.3
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhc
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (677)
....+||.|.|||.+.++ +.|+++|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~ 39 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATE---ETLQEVFEKA 39 (101)
T ss_dssp SCCCSEEEEESCCTTCCH---HHHHHHCSSC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC
Confidence 345789999999998876 7899999875
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.77 E-value=12 Score=30.62 Aligned_cols=32 Identities=9% Similarity=-0.044 Sum_probs=23.4
Q ss_pred CeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~A 353 (677)
+.+||||++.++|..|.+ +... ....++|++|
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 448999999999999988 4433 3445667665
No 210
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=51.07 E-value=16 Score=31.39 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=32.0
Q ss_pred cceEEEEecCC--CCCcccHHHHHHHhhhhcCCCceeEEEEEecc
Q 005776 200 DQFTVLVRNVP--PDPDESVSELVEHFFLVNHPNHYLTHQVVVNA 242 (677)
Q Consensus 200 ~~~TVlV~~IP--~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~ 242 (677)
.+++|.+.|+- .+.++.+.+.|++.|+++ |.|.++.+..|.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~ 61 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEK 61 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecC
Confidence 46899999994 345556788899999877 778888888764
No 211
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.57 E-value=11 Score=30.30 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=24.1
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcCC
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHP 230 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~p 230 (677)
....+||.|.|||.+.++ +.|+++|+++.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~ 34 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTA---DDLRQLFGDRKL 34 (93)
T ss_dssp CCCCCCEEEECCCTTCCH---HHHHHHHHHTTC
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHHcCC
Confidence 345689999999998876 778899988743
No 212
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=48.74 E-value=32 Score=23.15 Aligned_cols=21 Identities=48% Similarity=0.525 Sum_probs=16.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHH
Q 005776 287 KVDGIDYHISEIEKLSKEIAE 307 (677)
Q Consensus 287 kvDai~~~~~~l~~l~~~I~~ 307 (677)
|.|-|.|+++++..+.++|++
T Consensus 29 kkdliaylekeianlrkkiee 49 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 457888999988888887753
No 213
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=47.18 E-value=20 Score=31.62 Aligned_cols=37 Identities=8% Similarity=0.177 Sum_probs=29.3
Q ss_pred eEEEEecC----CCCCcccHHHHHHHhhhhcCCCceeEEEEEecch
Q 005776 202 FTVLVRNV----PPDPDESVSELVEHFFLVNHPNHYLTHQVVVNAN 243 (677)
Q Consensus 202 ~TVlV~~I----P~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~~~~ 243 (677)
..|.|.|+ |.+.++ +.|+++|+.+ |.|.++.+..|-.
T Consensus 3 ~kI~VgnL~~~~~~~tte---~~Lk~~Fs~f--GeV~~~~li~Dp~ 43 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQD---ISIKNYFKKY--GEISHFEAFNDPN 43 (136)
T ss_dssp CEEEEEESSSSCCCCCCH---HHHHHHHHTT--SCCSEEEEEECTT
T ss_pred cEEEEeCCCCCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC
Confidence 47999999 988776 7899999987 5777777776654
No 214
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=45.24 E-value=16 Score=29.37 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=23.2
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhc
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (677)
....+||.|.|||.+.++ +.|+++|++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~---~~l~~~F~~~ 40 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITE---DELKEVFEDA 40 (96)
T ss_dssp TTGGGEEEEESCCSSCCH---HHHHHHHCSE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhhC
Confidence 346789999999998875 7788999876
No 215
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.47 E-value=7.5 Score=33.72 Aligned_cols=21 Identities=24% Similarity=0.088 Sum_probs=18.9
Q ss_pred CCCeEEEEecCHHHHHHHHHh
Q 005776 319 IMPAAFVSFNSRWGAAVCAQT 339 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~ 339 (677)
..|.|||+|++.++|+.|.+.
T Consensus 67 ~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 67 PTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp EEEEEEECCSSHHHHHHHHTT
T ss_pred EeeEEEEEECCHHHHHHHHHh
Confidence 468999999999999999875
No 216
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=42.19 E-value=19 Score=29.30 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=21.2
Q ss_pred cceEEEEecCCCCCcccHHHHHHHhhhhc
Q 005776 200 DQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (677)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (677)
..+||.|.|||.+.++ +.|+++|++.
T Consensus 16 ~~~~l~V~nLp~~~t~---~~l~~~F~~~ 41 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSV---AELKVAISEL 41 (101)
T ss_dssp CSEEEEEECCCTTSCH---HHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHh
Confidence 5789999999998775 6677777765
No 217
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.71 E-value=19 Score=30.13 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=22.1
Q ss_pred CcceEEEEecCCCCCcccHHHHHHHhhhhc
Q 005776 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~ 228 (677)
...+||.|.|||.+.++ +.|+++|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~---~~l~~~f~~~ 49 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTE---RDLVSLFARF 49 (115)
T ss_dssp SCCSEEEEECCCTTCCH---HHHHHHTHHH
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHh
Confidence 35689999999998775 6788888876
No 218
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=41.19 E-value=19 Score=34.21 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=29.7
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC--CCCcceeeeCCC
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~--~~~~~~v~~AP~ 355 (677)
..|.+||.|++..+|..|.+.+... .+..+.++.+|+
T Consensus 174 ~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 174 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred ceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3579999999999999999998765 355667777764
No 219
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=39.13 E-value=8.2 Score=31.66 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=18.2
Q ss_pred CCCeEEEEecCHHHHHHHHH
Q 005776 319 IMPAAFVSFNSRWGAAVCAQ 338 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q 338 (677)
..|.|||+|++..+|+.|.+
T Consensus 49 ~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 49 SKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEESSCCCHHHHTT
T ss_pred ccceEEEEECCHHHHHHHHh
Confidence 45899999999999999988
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=38.87 E-value=44 Score=29.57 Aligned_cols=60 Identities=8% Similarity=-0.086 Sum_probs=39.3
Q ss_pred CCCeEEEEecCHHHHHHHHHhhcCC------------CC---------CcceeeeCCCCCCeeecccccchhHHHHHHHH
Q 005776 319 IMPAAFVSFNSRWGAAVCAQTQQTR------------NP---------TLWLTEWASEPRDVYWQNLAIPYVSLSVRRLI 377 (677)
Q Consensus 319 ~~~~AFVtF~s~~~a~~~~q~~~~~------------~~---------~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~ 377 (677)
..|.|||+|.+..+|..|.+..... .. ........+.+..|.-.||.....+.-++.++
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F 91 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVF 91 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 5699999999999999998654311 00 00011122345668889999887777777655
Q ss_pred H
Q 005776 378 M 378 (677)
Q Consensus 378 ~ 378 (677)
.
T Consensus 92 ~ 92 (158)
T 2kn4_A 92 E 92 (158)
T ss_dssp H
T ss_pred H
Confidence 4
No 221
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.50 E-value=56 Score=27.33 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=31.0
Q ss_pred CeEEEEecCHHHHHHHHHh-hcCCCCCcceeeeCC--CCCCeeecccc
Q 005776 321 PAAFVSFNSRWGAAVCAQT-QQTRNPTLWLTEWAS--EPRDVYWQNLA 365 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~-~~~~~~~~~~v~~AP--~P~DIiW~NL~ 365 (677)
+.|.|||.+...|+.+.+. -+.-+...+.|.+.| +|+-+.-.+|.
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~~~r~ll~gl~ 95 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRAPARLLLQGLP 95 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCCCCCCCCCSCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCCcceEeeecCC
Confidence 7999999999999888775 333344566676644 55556555554
No 222
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.08 E-value=41 Score=28.60 Aligned_cols=36 Identities=3% Similarity=-0.148 Sum_probs=26.9
Q ss_pred CcceEEEE--ecCCCCCcccHHHHHHHhhhhcCCCceeEEEEE
Q 005776 199 PDQFTVLV--RNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (677)
Q Consensus 199 ~~~~TVlV--~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~ 239 (677)
...+++.| -|+|.+.++ +.|+++|+++ |.|.++.+.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te---~~L~~~F~~f--G~v~~v~i~ 60 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSR---NQLLPVLEKC--GLVDALLMP 60 (114)
T ss_dssp SCCSEEEEETCTGGGTCCH---HHHHHHHHHH--SCEEEEECC
T ss_pred CCCCEEEEECCCCCCCCCH---HHHHHHHHhc--CCeEEEEEe
Confidence 34579999 559998776 7888999888 566666554
No 223
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=30.41 E-value=31 Score=35.60 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=20.1
Q ss_pred CeEEEEecCHHHHHHHHHhhcC
Q 005776 321 PAAFVSFNSRWGAAVCAQTQQT 342 (677)
Q Consensus 321 ~~AFVtF~s~~~a~~~~q~~~~ 342 (677)
|.|||+|++.++|+.|.+.+..
T Consensus 57 gfaFV~f~~~~~A~~Ai~~lnG 78 (345)
T 3tht_A 57 PYSFARYRTTEESKRAYVTLNG 78 (345)
T ss_dssp SEEEEEESSHHHHHHHHHHTTT
T ss_pred CEEEEEECCHHHHHHHHHHhCC
Confidence 8999999999999999988764
No 224
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=29.57 E-value=41 Score=29.32 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=23.6
Q ss_pred CCcceEEEEecCCCCCcccHHHHHHHhhhhcC
Q 005776 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNH 229 (677)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~~~l~~~f~~~~ 229 (677)
.....||.|.|||.+.++ +.|+++|+++.
T Consensus 42 ~~~~~~l~V~nLp~~~te---~~L~~~F~~~G 70 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQE---KDLKYIFGRYV 70 (143)
T ss_dssp CSCCSEEEEEEECTTCCH---HHHHHHHGGGC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHHhC
Confidence 345679999999998875 77889998874
No 225
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=27.07 E-value=69 Score=27.56 Aligned_cols=32 Identities=3% Similarity=-0.130 Sum_probs=25.0
Q ss_pred EEEecCCCCCcccHHHHHHHhhhhcCCCceeEEEEEe
Q 005776 204 VLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (677)
Q Consensus 204 VlV~~IP~~~~~~~~~~l~~~f~~~~p~~v~~v~i~~ 240 (677)
|.|.|+|.+.++ +.|++.|+++ |.|.++.+..
T Consensus 28 l~V~NL~~~vt~---~~L~~~Fs~y--G~V~~v~i~~ 59 (124)
T 2e5i_A 28 LSIQNPLYPITV---DVLYTVCNPV--GKVQRIVIFK 59 (124)
T ss_dssp EEEESCCSCCCH---HHHHHHHTTT--SCEEEEEEEE
T ss_pred EEEcCcCCCCCH---HHHHHHHHhc--CCEEEEEEEe
Confidence 458999987765 7899999987 6777877654
No 226
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.20 E-value=36 Score=28.01 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred CCeEEEEecCHHHHHHHHH
Q 005776 320 MPAAFVSFNSRWGAAVCAQ 338 (677)
Q Consensus 320 ~~~AFVtF~s~~~a~~~~q 338 (677)
.+.+||||++.++|..|.+
T Consensus 58 ~d~~fVtF~d~~sAl~AI~ 76 (95)
T 1ufw_A 58 QGQMLVTFADSHSALSVLD 76 (95)
T ss_dssp TTEEEEECSCSHHHHHHHH
T ss_pred cCcEEEEEcChHHHHHHHh
No 227
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.91 E-value=1e+02 Score=18.17 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 005776 294 HISEIEKLSKEIAEERERVV 313 (677)
Q Consensus 294 ~~~~l~~l~~~I~~~r~~~~ 313 (677)
+-++++++++.+.+.|++..
T Consensus 6 lykeledlqerlrklrkklr 25 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44678888888888887753
No 228
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.78 E-value=1.2e+02 Score=17.99 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=9.3
Q ss_pred cCHHHH----HHHHHHHHHHHHHH
Q 005776 288 VDGIDY----HISEIEKLSKEIAE 307 (677)
Q Consensus 288 vDai~~----~~~~l~~l~~~I~~ 307 (677)
+|++++ +++++..+.++|..
T Consensus 2 idalefendaleqkiaalkqkias 25 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHHHH
Confidence 456544 23444444444443
No 229
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=21.53 E-value=67 Score=26.54 Aligned_cols=41 Identities=10% Similarity=-0.010 Sum_probs=28.9
Q ss_pred cceEEEEecC--CCCCcc-----cHHHHHHHhhhhcCCCceeEEEEEecc
Q 005776 200 DQFTVLVRNV--PPDPDE-----SVSELVEHFFLVNHPNHYLTHQVVVNA 242 (677)
Q Consensus 200 ~~~TVlV~~I--P~~~~~-----~~~~~l~~~f~~~~p~~v~~v~i~~~~ 242 (677)
.+++|.+.|+ |.+..+ .+.+.|++.|+++ |.|.++.+.+|.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~ 51 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPV 51 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCB
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccC
Confidence 4578999998 444322 3567788888877 678888877664
No 230
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.30 E-value=1.2e+02 Score=25.04 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=26.2
Q ss_pred CcceEEEEecCCCCCc--------ccHHHHHHHhhhhcCCCceeEEEE
Q 005776 199 PDQFTVLVRNVPPDPD--------ESVSELVEHFFLVNHPNHYLTHQV 238 (677)
Q Consensus 199 ~~~~TVlV~~IP~~~~--------~~~~~~l~~~f~~~~p~~v~~v~i 238 (677)
...+||.+.|+....+ +.+.+.|+++|+++ |.|.++.+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i 58 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLL 58 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEE
Confidence 4578999999944221 12467889999887 56667754
Done!