BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005777
(677 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
pdb|1PXY|B Chain B, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
Length = 506
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/500 (78%), Positives = 447/500 (89%), Gaps = 1/500 (0%)
Query: 122 ESEKASYVAHINSFLGEDPFLSKYLPIDPSTNALFDLAKDGVLLCKLINVAVPGTIDERA 181
+SEK +V HIN +LG+DPFL ++LP+DP +N L++L KDGVLLCKLINVAVPGTIDERA
Sbjct: 6 QSEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERA 65
Query: 182 INTKRVLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLLLGLISQIIKIQLLA 241
INTKRVLNPWERNENHTLCLNSAKA+GC+VVNIGTQDL EGRPHL+LGLISQ+IKIQLLA
Sbjct: 66 INTKRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLA 125
Query: 242 DLNLKKTPQLVELVDDNNDVEELLGLPPEKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGE 301
DLNLKKTPQLVEL++D++DVEELL LPPEKVLLKWMNFHLKK GY+K V+NFS+DLKD +
Sbjct: 126 DLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQ 185
Query: 302 AYAHLLNALAPEHCSPATFDTKDPTERASKVIEQAEKMDCKRYLTPKDIVEGSPNLNLAF 361
AYA LLN LAPEHC PAT D KDP ERA V+ AE+M+CKRYLT ++IVEGS LNLAF
Sbjct: 186 AYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAERMNCKRYLTAEEIVEGSSTLNLAF 245
Query: 362 VAHIFQHRNGLSMDSNKISFAEMMTDDAQTSREERCFRLWINSLGTATYVNNVFEDVRNG 421
VA IF RNGL+ D K +FAEMMT+D +T R+ERC+RLWINSLG +YVNNVFEDVRNG
Sbjct: 246 VAQIFHERNGLNKDG-KYAFAEMMTEDVETCRDERCYRLWINSLGIDSYVNNVFEDVRNG 304
Query: 422 WVLLEVLDKVSPGSVSWKQATKPPIKMPFRKVENCNQVVKIGKELNFSLVNVAGNDIVQG 481
W+LLEVLDKVSP SV+WK A+KPPIKMPFRKVENCNQV+KIGK+L FSLVNVAGNDIVQG
Sbjct: 305 WILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGKQLKFSLVNVAGNDIVQG 364
Query: 482 NKKLILAFLWQLMRFTMLQLLKNLRTHSQGKEITDTDILNWANRKVKKANRTSQIESFKD 541
NKKLIL LWQLMRF MLQLLK+LR+ + GKE+TD DIL+WANRKV+ R QIESFKD
Sbjct: 365 NKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKD 424
Query: 542 KNLSNGIFFLELLSAVEPRVVNWSLVTKGETEEDKKLNATYIISVARKLGCSIFLLPEDI 601
K+LS+G+FFL LL AVEPRVVNW+LVTKGET+++K+LNATYI+SVARKLGCS+FLLPEDI
Sbjct: 425 KSLSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRLNATYIVSVARKLGCSVFLLPEDI 484
Query: 602 MEVNQKMILILTASIMYWSL 621
+EVNQKMILILTASIMYWSL
Sbjct: 485 VEVNQKMILILTASIMYWSL 504
>pdb|1RT8|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Schizosaccharomyces Pombe Fimbrin
Length = 513
Score = 444 bits (1143), Expect = e-125, Method: Compositional matrix adjust.
Identities = 224/508 (44%), Positives = 326/508 (64%), Gaps = 11/508 (2%)
Query: 118 HAINESEKASYVAHINSFLGEDPFLSKYLPIDPSTNALFDLAKDGVLLCKLINVAVPGTI 177
H INE E+ ++ HINS L DP + +PI+ T FD KDG++L KLIN +VP TI
Sbjct: 7 HTINEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTI 66
Query: 178 DERAINTKRVLNPWERN---ENHTLCLNSAKAIG-CTVVNIGTQDLVEGRPHLLLGLISQ 233
DER +N +R P + EN+ + +NSAKA+G ++ NIG D++EGR HL+LGL+ Q
Sbjct: 67 DERVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQ 126
Query: 234 IIKIQLLADLNLKKTPQLVELVDDNNDVEELLGLPPEKVLLKWMNFHLKKAGYEKQVTNF 293
II+ LL +++ P+L L++++ +++ L LPPEK+LL+W N+HLK A + + V+NF
Sbjct: 127 IIRRGLLGKIDITLHPELYRLLEEDETLDQFLRLPPEKILLRWFNYHLKAANWPRTVSNF 186
Query: 294 SSDLKDGEAYAHLLNALAPEHCSPATFDTKDPTERASKVIEQAEKMDCKRYLTPKDIVEG 353
S D+ DGE Y LLN LAPE CS A T D +RA +V++ AEK+DC++YLTP +V G
Sbjct: 187 SKDVSDGENYTVLLNQLAPELCSRAPLQTTDVLQRAEQVLQNAEKLDCRKYLTPTAMVAG 246
Query: 354 SPNLNLAFVAHIFQHRNGLSMDSNKISFAEMMTDDAQTSREERCFRLWINSLGTATYVNN 413
+P LNLAFVAH+F GL N+ E+ DA+ RE R F LW+NSL +++
Sbjct: 247 NPKLNLAFVAHLFNTHPGLE-PLNEEEKPEIEPFDAEGEREARVFTLWLNSLDVTPSIHD 305
Query: 414 VFEDVRNGWVLLEVLDKVSPGSVSWKQATKPPIK----MPFRKVENCNQVVKIGKELNFS 469
F ++R+G +LL+ DK++P +V+WK+ K P M F+ VENCN V +GK FS
Sbjct: 306 FFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQGFS 365
Query: 470 LVNVAGNDIVQGNKKLILAFLWQLMRFTMLQLLKNLRTHSQGKEITDTDILNWANRKVKK 529
LV + G DI G++ L LA +WQ+MR + + L +L GK ++D+D++ WAN K
Sbjct: 366 LVGIQGADITDGSRTLTLALVWQMMRMNITKTLHSL--SRGGKTLSDSDMVAWANSMAAK 423
Query: 530 ANRTSQIESFKDKNLSNGIFFLELLSAVEPRVVNWSLVTKGETEEDKKLNATYIISVARK 589
+ SQI SF+D ++S G+F L++L ++ V+++LVT G TEE NA IS+ARK
Sbjct: 424 GGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGSTEELAIQNARLAISIARK 483
Query: 590 LGCSIFLLPEDIMEVNQKMILILTASIM 617
LG IF+LPEDI+ V +++L S+M
Sbjct: 484 LGAVIFILPEDIVAVRPRLVLHFIGSLM 511
>pdb|3BYH|B Chain B, Model Of Actin-Fimbrin Abd2 Complex
Length = 231
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/234 (79%), Positives = 211/234 (90%), Gaps = 5/234 (2%)
Query: 388 DAQTSREERCFRLWINSLGTATYVNNVFEDVRNGWVLLEVLDKVSPGSVSWKQATKPPIK 447
D +T R+ERC+RLWINSLG +YVNNVFEDVRNGW+LLEVLDKVSP SV+WK A+KPPIK
Sbjct: 1 DVETCRDERCYRLWINSLGIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIK 60
Query: 448 MPFRKVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQLMRFTMLQLLKNLRT 507
MPFRKVENCNQV+KIGK+L FSLVNVAGNDIVQGNKKLIL LWQLMRF MLQLLK+LR+
Sbjct: 61 MPFRKVENCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRS 120
Query: 508 HSQGKEITDTDILNWANRKVKKANRTSQIESFKDKNLSNGIFFLELLSAVEPRVVNWSLV 567
E+TD DIL+WANRKV+ R QIESFKDK+LS+G+FFL LL AVEPRVVNW+LV
Sbjct: 121 -----EMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLV 175
Query: 568 TKGETEEDKKLNATYIISVARKLGCSIFLLPEDIMEVNQKMILILTASIMYWSL 621
TKGET+++K+LNATYI+SVARKLGCS+FLLPEDI+EVNQKMILILTASIMYWSL
Sbjct: 176 TKGETDDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSL 229
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 108/226 (47%), Gaps = 23/226 (10%)
Query: 146 LPIDPSTNALFDLAKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAK 205
L ID N +F+ ++G +L ++++ P +++ + + + P+ + EN + K
Sbjct: 18 LGIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGK 77
Query: 206 AIGCTVVNIGTQDLVEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVELVDDNNDVEELL 265
+ ++VN+ D+V+G L+LGL+ Q+++ +L L ++ E+ D +
Sbjct: 78 QLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRS----EMTDAD------- 126
Query: 266 GLPPEKVLLKWMNFHLKKAGYEKQVTNFS-SDLKDGEAYAHLLNALAPE--HCSPATFDT 322
+L W N ++ G + Q+ +F L G + +LL A+ P + + T
Sbjct: 127 -------ILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGE 179
Query: 323 KDPTER--ASKVIEQAEKMDCKRYLTPKDIVEGSPNLNLAFVAHIF 366
D +R A+ ++ A K+ C +L P+DIVE + + L A I
Sbjct: 180 TDDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIM 225
>pdb|1AOA|A Chain A, N-Terminal Actin-Crosslinking Domain From Human Fimbrin
Length = 275
Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/264 (46%), Positives = 180/264 (68%), Gaps = 11/264 (4%)
Query: 112 ATTTVHHAINESEKASYVAHINSFLGEDPFLSKYLPIDPSTNALFDLAKDGVLLCKLINV 171
++ H+ +E EK ++V IN L DP +P++P+T+ LF DG++LCK+IN+
Sbjct: 13 SSEGTQHSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINL 72
Query: 172 AVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLLLGLI 231
+VP TIDERAIN K+ L P+ EN L LNSA AIGC VVNIG +DL G+PHL+LGL+
Sbjct: 73 SVPDTIDERAINKKK-LTPFIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLL 131
Query: 232 SQIIKIQLLADLNLKKTPQLVELVDDNNDVEELLGLPPEKVLLKWMNFHLKKAGYEKQVT 291
QIIKI L AD+ L + L L+ D +EEL+ L PE++LL+W NFHL+ +G++K +
Sbjct: 132 WQIIKIGLFADIELSRNEALAALLRDGETLEELMKLSPEELLLRWANFHLENSGWQK-IN 190
Query: 292 NFSSDLKDGEAYAHLLNALAPE---------HCSPATFDTKDPTERASKVIEQAEKMDCK 342
NFS+D+KD +AY HLLN +AP+ + + F+ D +RA +++QA+K+ C+
Sbjct: 191 NFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCR 250
Query: 343 RYLTPKDIVEGSPNLNLAFVAHIF 366
+++TP D+V G+P LNLAFVA++F
Sbjct: 251 QFVTPADVVSGNPKLNLAFVANLF 274
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 112/265 (42%), Gaps = 40/265 (15%)
Query: 386 TDDAQTSREERCFRLWINS-----------LGTATYVNNVFEDVRNGWVLLEVLDKVSPG 434
T + + E+ F WIN + +++F+ V +G VL ++++ P
Sbjct: 17 TQHSYSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPD 76
Query: 435 SVSWKQATKPPIKMPFRKVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQLM 494
++ + K + PF EN N + + +VN+ D+ G L+L LWQ++
Sbjct: 77 TIDERAINKKKL-TPFIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQII 135
Query: 495 RFTMLQLLKNLRTHSQGKEITDTD-------------ILNWANRKVKKANRTSQIESFKD 541
+ + ++ R + + D + +L WAN ++ + +I +F
Sbjct: 136 KIGLFADIELSRNEALAALLRDGETLEELMKLSPEELLLRWANFHLENSG-WQKINNFS- 193
Query: 542 KNLSNGIFFLELLSAV--------EPRV-VNWSLVTKGETEEDKKLNATYIISVARKLGC 592
++ + + LL+ + EPR+ +N S G E D A ++ A KLGC
Sbjct: 194 ADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMS----GFNETDDLKRAESMLQQADKLGC 249
Query: 593 SIFLLPEDIMEVNQKMILILTASIM 617
F+ P D++ N K+ L A++
Sbjct: 250 RQFVTPADVVSGNPKLNLAFVANLF 274
>pdb|1WJO|A Chain A, Solution Structure Of The Forth Ch Domain From Human
Plastin 3 T-Isoform
Length = 124
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/110 (40%), Positives = 74/110 (67%), Gaps = 1/110 (0%)
Query: 509 SQGKEITDTDILNWANRKVKKANRTSQIESFKDKNLSNGIFFLELLSAVEPRVVNWSLVT 568
S G D I+NW NR + +A +++ I+SFKDK +S+ + ++L+ A++P +N+ LV
Sbjct: 2 SSGSSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVK 61
Query: 569 KGE-TEEDKKLNATYIISVARKLGCSIFLLPEDIMEVNQKMILILTASIM 617
G TE+DK NA Y +S+AR++G ++ LPED++EV KM++ + A +M
Sbjct: 62 SGNLTEDDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLM 111
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 270 EKVLLKWMNFHLKKAGYEKQVTNFSSD-LKDGEAYAHLLNALAP-----EHCSPATFDTK 323
+ +++ W+N L +AG + +F + A L++A+ P +
Sbjct: 9 DDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTED 68
Query: 324 DPTERASKVIEQAEKMDCKRYLTPKDIVEGSPNLNLAFVA 363
D A + A ++ + Y P+D+VE P + + A
Sbjct: 69 DKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFA 108
>pdb|2D85|A Chain A, Solution Structure Of The Fourth Ch Domain From Human L-
Plastin
Length = 124
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 509 SQGKEITDTDILNWANRKVKKANRTSQIESFKDKNLSNGIFFLELLSAVEPRVVNWSLVT 568
S G D I+NW N +++A ++S I SFKD +S + L+L+ A++P +N+ L+
Sbjct: 2 SSGSSGNDDIIVNWVNETLREAEKSSSISSFKDPKISTSLPVLDLIDAIQPGSINYDLLK 61
Query: 569 KGETEEDKKL-NATYIISVARKLGCSIFLLPEDIMEVNQKMILILTASIM 617
+D+KL NA Y IS+ARK+G ++ LPED++EVN KM++ + A +M
Sbjct: 62 TENLNDDEKLNNAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLM 111
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 296
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 117/235 (49%), Gaps = 20/235 (8%)
Query: 388 DAQTSREERCFRLWINS--LGTATYVNNVFEDVRNGWVLLEVLDKVSPGSVSWKQATKPP 445
D + +++ F W+N + ++++++ED+R+G L+ +L+ +S S+ ++
Sbjct: 68 DERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKG---- 123
Query: 446 IKMPFRKVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQLMRFTMLQLLKNL 505
+M F K++N + + LVN+ +DI GN KL L +W ++ + ++
Sbjct: 124 -RMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQ---ISDI 179
Query: 506 RTHSQGKEITDTD-ILNWANRKVKKANRTSQIESFKDKNLSNGIFFLELLSAVEPRVVNW 564
+ Q +++T + +L W+ R V + + + ++F + +G F ++ +P +++
Sbjct: 180 QVSGQSEDMTAKEKLLLWSQRMV-EGYQGLRCDNFT-SSWRDGRLFNAIIHRHKPLLIDM 237
Query: 565 SLVTKGETEEDKKLNATYIISVA-RKLGCSIFLLPE--DIMEVNQKMILILTASI 616
+ V + E N SVA R LG + L PE D+ + ++K I+ +S+
Sbjct: 238 NKVYRQTNLE----NLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSL 288
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 22/110 (20%)
Query: 270 EKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPEHCSPATFDTKDPTERA 329
+K KW+N HL KA ++ +++ DL+DG LL L+ + P E+
Sbjct: 75 KKTFTKWVNKHLIKA--QRHISDLYEDLRDGHNLISLLEVLSGDSL---------PREKG 123
Query: 330 SKVIEQAEK----MDCKRYLTPK-------DIVEGSPNLNLAFVAHIFQH 368
+ + +D R+ K DI +G+P L L + I H
Sbjct: 124 RMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILH 173
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 19/164 (11%)
Query: 195 ENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVEL 254
+N + L+ + +VNI D+ +G P L LGLI II ++D+ + +
Sbjct: 131 QNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSE---- 186
Query: 255 VDDNNDVEELLGLPPEKVLLKWMNFHLKKAGYEK-QVTNFSSDLKDGEAYAHLLNALAPE 313
+ ++ LL W ++ GY+ + NF+S +DG + +++ P
Sbjct: 187 -----------DMTAKEKLLLWSQRMVE--GYQGLRCDNFTSSWRDGRLFNAIIHRHKPL 233
Query: 314 HCSPATFDTKDPTERASKVIEQAEK-MDCKRYLTPKDIVEGSPN 356
+ E + AE+ + R L P+D+ P+
Sbjct: 234 LIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPD 277
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin
pdb|1QAG|B Chain B, Actin Binding Region Of The Dystrophin Homologue Utrophin
Length = 226
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 106/213 (49%), Gaps = 17/213 (7%)
Query: 394 EERCFRLWINSLGTATY---VNNVFEDVRNGWVLLEVLDKVSPGSVSWKQATKPPIKMPF 450
+++ F WIN+ + + +N+ F D+++G LL++L+ ++ S+ ++ +
Sbjct: 3 QKKTFTKWINARFSKSGKPPINDXFTDLKDGRKLLDLLEGLTGTSLPKERGS-----TRV 57
Query: 451 RKVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQ-LMRFTMLQLLKNLRTHS 509
+ N N+V+++ + N LVN+ G DIV GN KL L LW ++ + + + K++ +
Sbjct: 58 HALNNVNRVLQVLHQNNVELVNIGGTDIVDGNHKLTLGLLWSIILHWQVKDVXKDVXSDL 117
Query: 510 QGKEITDTDILNWANRKVKKANRTSQIESFKDKNLSNGIFFLELLSAVEPRVVNWSLVTK 569
Q ++ +L+W R+ + + +F + ++G+ F +L +P + +W V K
Sbjct: 118 QQTN-SEKILLSWV-RQTTRPYSQVNVLNFT-TSWTDGLAFNAVLHRHKPDLFSWDKVVK 174
Query: 570 GETEEDKKLNATYIISVARK-LGCSIFLLPEDI 601
E + S A+ LG L PED+
Sbjct: 175 XSPIE----RLEHAFSKAQTYLGIEKLLDPEDV 203
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 84/215 (39%), Gaps = 34/215 (15%)
Query: 150 PSTNALFDLAKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAI-- 207
P N F KDG L L+ ++ P ER LN+ +
Sbjct: 21 PPINDXFTDLKDGRKLLDLLEGLTGTSL------------PKERGSTRVHALNNVNRVLQ 68
Query: 208 -----GCTVVNIGTQDLVEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVELVDDNNDVE 262
+VNIG D+V+G L LGL+ II + D+ D +D++
Sbjct: 69 VLHQNNVELVNIGGTDIVDGNHKLTLGLLWSIILHWQVKDVX----------KDVXSDLQ 118
Query: 263 ELLGLPPEKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPEHCSPATFDT 322
+ EK+LL W+ + + V NF++ DG A+ +L+ P+ S
Sbjct: 119 Q---TNSEKILLSWVR-QTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVK 174
Query: 323 KDPTERASKVIEQAEK-MDCKRYLTPKDIVEGSPN 356
P ER +A+ + ++ L P+D+ P+
Sbjct: 175 XSPIERLEHAFSKAQTYLGIEKLLDPEDVAVRLPD 209
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|B Chain B, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|C Chain C, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|D Chain D, N-Terminal Actin-Binding Domain Of Human Dystrophin
Length = 246
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 118/233 (50%), Gaps = 22/233 (9%)
Query: 394 EERCFRLWINSLGTA---TYVNNVFEDVRNGWVLLEVLDKVSPGSVSWKQATKPPIKMPF 450
+++ F W+N+ + ++ N+F D+++G LL++L+ ++ ++ K
Sbjct: 17 QKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTG-----QKLPKEKGSTRV 71
Query: 451 RKVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQ-LMRFTMLQLLKNLRTHS 509
+ N N+ +++ + N LVN+ DIV GN KL L +W ++ + + ++KN+
Sbjct: 72 HALNNVNKALRVLQNNNVDLVNIGSTDIVDGNHKLTLGLIWNIILHWQVKNVMKNIMA-- 129
Query: 510 QGKEITDTD--ILNWANRKVKKANRTSQIESFKDKNLSNGIFFLELLSAVEPRVVNWSLV 567
G + T+++ +L+W + + + + I +F + S+G+ L+ + P + +W+ V
Sbjct: 130 -GLQQTNSEKILLSWVRQSTRNYPQVNVI-NFT-TSWSDGLALNALIHSHRPDLFDWNSV 186
Query: 568 TKGETEEDKKLNATYIISVAR-KLGCSIFLLPEDIMEV--NQKMILILTASIM 617
++ + +A ++AR +LG L PED+ ++K IL+ S+
Sbjct: 187 VSQQSATQRLEHA---FNIARYQLGIEKLLDPEDVDTTYPDKKSILMYITSLF 236
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 28/166 (16%)
Query: 211 VVNIGTQDLVEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVELVDDNNDVEELLGLPPE 270
+VNIG+ D+V+G L LGLI II +K + N + L E
Sbjct: 91 LVNIGSTDIVDGNHKLTLGLIWNII-----LHWQVKNVMK--------NIMAGLQQTNSE 137
Query: 271 KVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPEHCSPATFDTKDPTERAS 330
K+LL W+ + + V NF++ DG A LNAL H P FD + S
Sbjct: 138 KILLSWVRQSTRNYP-QVNVINFTTSWSDGLA----LNALIHSH-RPDLFDWNSVVSQQS 191
Query: 331 KVIEQAEKMDCKRY-------LTPKDIVEGSPNLN--LAFVAHIFQ 367
+ RY L P+D+ P+ L ++ +FQ
Sbjct: 192 ATQRLEHAFNIARYQLGIEKLLDPEDVDTTYPDKKSILMYITSLFQ 237
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 253 ELVDDNNDVEELLGLPPEKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALA- 311
E V+D+ + E++ +K KW+N K G ++ + N SDL+DG LL L
Sbjct: 5 EEVEDSYEREDV----QKKTFTKWVNAQFSKFG-KQHIENLFSDLQDGRRLLDLLEGLTG 59
Query: 312 ---PEHCSPATFDTKDPTERASKVIEQAEKMDCKRYLTPKDIVEGSPNLNLAFVAHIFQH 368
P+ + +A +V+ Q +D + DIV+G+ L L + +I H
Sbjct: 60 QKLPKEKGSTRVHALNNVNKALRVL-QNNNVDLVN-IGSTDIVDGNHKLTLGLIWNIILH 117
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
Length = 245
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 117/243 (48%), Gaps = 25/243 (10%)
Query: 385 MTDDAQTSREERCFRLWINS-------LGTATYVNNVFEDVRNGWVLLEVLDKVSPGSVS 437
M D + +++ F W+N ++++++ED+R+G L+ +L+ +S S+
Sbjct: 4 MEFDERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLP 63
Query: 438 WKQATKPPIKMPFRKVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQLMRFT 497
++ +M F K++N + + LVN+ +DI GN KL L +W ++
Sbjct: 64 REKG-----RMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHF 118
Query: 498 MLQLLKNLRTHSQGKEITDTD-ILNWANRKVKKANRTSQIESFKDKNLSNGIFFLELLSA 556
+ +++ Q +++T + +L W+ R V + + + ++F + +G F ++
Sbjct: 119 Q---ISDIQVSGQSEDMTAKEKLLLWSQRMV-EGYQGLRCDNFT-TSWRDGRLFNAIIHR 173
Query: 557 VEPRVVNWSLVTKGETEEDKKLNATYIISVA-RKLGCSIFLLPE--DIMEVNQKMILILT 613
+P +++ + V + E N SVA R LG + L PE D+ + ++K I+
Sbjct: 174 HKPMLIDMNKVYRQTNLE----NLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYV 229
Query: 614 ASI 616
+S+
Sbjct: 230 SSL 232
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 23/113 (20%)
Query: 270 EKVLLKWMNFHLKK---AGYEKQVTNFSSDLKDGEAYAHLLNALAPEHCSPATFDTKDPT 326
+K KW+N HL K A ++ +++ DL+DG LL L+ + P
Sbjct: 14 KKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSL---------PR 64
Query: 327 ERASKVIEQAEK----MDCKRYLTPK-------DIVEGSPNLNLAFVAHIFQH 368
E+ + + +D R+ K DI +G+P L L + I H
Sbjct: 65 EKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILH 117
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 19/164 (11%)
Query: 195 ENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVEL 254
+N + L+ + +VNI D+ +G P L LGLI II ++D+ + +
Sbjct: 75 QNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSE---- 130
Query: 255 VDDNNDVEELLGLPPEKVLLKWMNFHLKKAGYEK-QVTNFSSDLKDGEAYAHLLNALAPE 313
+ ++ LL W ++ GY+ + NF++ +DG + +++ P
Sbjct: 131 -----------DMTAKEKLLLWSQRMVE--GYQGLRCDNFTTSWRDGRLFNAIIHRHKPM 177
Query: 314 HCSPATFDTKDPTERASKVIEQAEK-MDCKRYLTPKDIVEGSPN 356
+ E + AE+ + R L P+D+ P+
Sbjct: 178 LIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPD 221
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin
Length = 243
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 116/240 (48%), Gaps = 25/240 (10%)
Query: 388 DAQTSREERCFRLWINS-------LGTATYVNNVFEDVRNGWVLLEVLDKVSPGSVSWKQ 440
D + +++ F W+N ++++++ED+R+G L+ +L+ +S S+ ++
Sbjct: 10 DERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREK 69
Query: 441 ATKPPIKMPFRKVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQLMRFTMLQ 500
+M F K++N + + LVN+ +DI GN KL L +W ++
Sbjct: 70 G-----RMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQ-- 122
Query: 501 LLKNLRTHSQGKEITDTD-ILNWANRKVKKANRTSQIESFKDKNLSNGIFFLELLSAVEP 559
+ +++ Q +++T + +L W+ R V + + + ++F + +G F ++ +P
Sbjct: 123 -ISDIQVSGQSEDMTAKEKLLLWSQRMV-EGYQGLRCDNFT-SSWRDGRLFNAIIHRHKP 179
Query: 560 RVVNWSLVTKGETEEDKKLNATYIISVA-RKLGCSIFLLPE--DIMEVNQKMILILTASI 616
+++ + V + E N SVA R LG + L PE D+ + ++K I+ +S+
Sbjct: 180 LLIDMNKVYRQTNLE----NLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSL 235
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 270 EKVLLKWMNFHLKK---AGYEKQVTNFSSDLKDGEAYAHLLNALAPEHCSPATFDTKDPT 326
+K KW+N HL K A ++ +++ DL+DG LL L+ + + +
Sbjct: 17 KKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGD-----SLPREKGR 71
Query: 327 ERASKVIEQAEKMDCKRYLTPK-------DIVEGSPNLNLAFVAHIFQH 368
R K+ +D R+ K DI +G+P L L + I H
Sbjct: 72 MRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILH 120
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 19/164 (11%)
Query: 195 ENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVEL 254
+N + L+ + +VNI D+ +G P L LGLI II ++D+ + +
Sbjct: 78 QNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSE---- 133
Query: 255 VDDNNDVEELLGLPPEKVLLKWMNFHLKKAGYEK-QVTNFSSDLKDGEAYAHLLNALAPE 313
+ ++ LL W ++ GY+ + NF+S +DG + +++ P
Sbjct: 134 -----------DMTAKEKLLLWSQRMVE--GYQGLRCDNFTSSWRDGRLFNAIIHRHKPL 180
Query: 314 HCSPATFDTKDPTERASKVIEQAEK-MDCKRYLTPKDIVEGSPN 356
+ E + AE+ + R L P+D+ P+
Sbjct: 181 LIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPD 224
>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At
2.2a Resolution
Length = 250
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 89/193 (46%), Gaps = 18/193 (9%)
Query: 383 EMMTDDAQTSREERCFRLWINS--LGTATYVNNVFEDVRNGWVLLEVLDKVSPGSVSWKQ 440
+++ D A ++ + F W NS T + N+ ED RNG L+ +L+ +S ++
Sbjct: 13 DLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISG-----ER 67
Query: 441 ATKPPI-KMPFRKVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQ-LMRFTM 498
+P KM F K+ N N+ + LV++ +IV GN K+ L +W ++RF +
Sbjct: 68 LPRPDKGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAI 127
Query: 499 LQLLKNLRTHSQGKEITDTDILNWANRKVKKANRTSQIESFKDKNLSNGIFFLELLSAVE 558
+ + +G +L W RK R +++F + +G+ L+
Sbjct: 128 QDISVEETSAKEG-------LLLWCQRKT-APYRNVNVQNFH-TSWKDGLALCALIHRHR 178
Query: 559 PRVVNWSLVTKGE 571
P +++++ + K +
Sbjct: 179 PDLIDYAKLRKDD 191
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 208 GCTVVNIGTQDLVEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVELVDDNNDVEELLGL 267
G +V+IG +++V+G + LG+I II + D+++++T
Sbjct: 95 GVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEET------------------- 135
Query: 268 PPEKVLLKWMNFHLKKAGYEK-QVTNFSSDLKDGEAYAHLLNALAPEHCSPATFDTKDPT 326
++ LL W K A Y V NF + KDG A L++ P+ A DP
Sbjct: 136 SAKEGLLLWC--QRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPI 193
Query: 327 ERASKVIEQAEK-MDCKRYLTPKDIV 351
+ E AEK +D + L +DIV
Sbjct: 194 GNLNTAFEVAEKYLDIPKMLDAEDIV 219
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 271 KVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPE 313
K W N HL+KAG Q+ N D ++G LL ++ E
Sbjct: 26 KTFTAWCNSHLRKAG--TQIENIEEDFRNGLKLMLLLEVISGE 66
>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
pdb|1WKU|B Chain B, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
Length = 254
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 89/193 (46%), Gaps = 18/193 (9%)
Query: 383 EMMTDDAQTSREERCFRLWINS--LGTATYVNNVFEDVRNGWVLLEVLDKVSPGSVSWKQ 440
+++ D A ++ + F W NS T + N+ ED RNG L+ +L+ +S ++
Sbjct: 17 DLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISG-----ER 71
Query: 441 ATKPPI-KMPFRKVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQ-LMRFTM 498
+P KM F K+ N N+ + LV++ +IV GN K+ L +W ++RF +
Sbjct: 72 LPRPDKGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAI 131
Query: 499 LQLLKNLRTHSQGKEITDTDILNWANRKVKKANRTSQIESFKDKNLSNGIFFLELLSAVE 558
+ + +G +L W RK R +++F + +G+ L+
Sbjct: 132 QDISVEETSAKEG-------LLLWCQRKT-APYRNVNVQNFH-TSWKDGLALCALIHRHR 182
Query: 559 PRVVNWSLVTKGE 571
P +++++ + K +
Sbjct: 183 PDLIDYAKLRKDD 195
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 208 GCTVVNIGTQDLVEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVELVDDNNDVEELLGL 267
G +V+IG +++V+G + LG+I II + D+++++T
Sbjct: 99 GVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEET------------------- 139
Query: 268 PPEKVLLKWMNFHLKKAGYEK-QVTNFSSDLKDGEAYAHLLNALAPEHCSPATFDTKDPT 326
++ LL W K A Y V NF + KDG A L++ P+ A DP
Sbjct: 140 SAKEGLLLWC--QRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPI 197
Query: 327 ERASKVIEQAEK-MDCKRYLTPKDIV 351
+ E AEK +D + L +DIV
Sbjct: 198 GNLNTAFEVAEKYLDIPKMLDAEDIV 223
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 271 KVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPE 313
K W N HL+KAG Q+ N D ++G LL ++ E
Sbjct: 30 KTFTAWCNSHLRKAG--TQIENIEEDFRNGLKLMLLLEVISGE 70
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 104/243 (42%), Gaps = 32/243 (13%)
Query: 387 DDAQTSREERCFRLWINS--LGTATYVNNVFEDVRNGWVLLEVLDKVSPGSVSWKQATKP 444
D A ++ + F W NS T + N+ ED R+G L+ +L+ +S ++ KP
Sbjct: 2 DPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLA-----KP 56
Query: 445 PI-KMPFRKVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQ-LMRFTMLQLL 502
KM K+ N N+ + LV++ +IV GN K+ L +W ++RF + +
Sbjct: 57 ERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDIS 116
Query: 503 KNLRTHSQGKEITDTDILNWANRKV---KKANRTSQIESFKDKNLSNGIFFLELLSAVEP 559
+ +G +L W RK K N + S+KD G+ F L+ P
Sbjct: 117 VEETSAKEG-------LLLWYQRKTAPYKNVNIQNFHISWKD-----GLGFCALIHRHRP 164
Query: 560 RVVNWSLVTKGETEEDKKLNATYIISVARK-LGCSIFLLPEDIMEV---NQKMILILTAS 615
++++ + K +D N VA K L L EDI+ ++K I+ +S
Sbjct: 165 ELIDYGKLRK----DDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSS 220
Query: 616 IMY 618
+
Sbjct: 221 FYH 223
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 27/194 (13%)
Query: 160 KDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAIGCTVVNIGTQDL 219
+DG+ L L+ V + G ER +R + N L+ + G +V+IG +++
Sbjct: 36 RDGLKLMLLLEV-ISG---ERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEI 91
Query: 220 VEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVELVDDNNDVEELLGLPPEKVLLKWMNF 279
V+G + LG+I II + D+++++T ++ LL W +
Sbjct: 92 VDGNVKMTLGMIWTIILRFAIQDISVEET-------------------SAKEGLLLW--Y 130
Query: 280 HLKKAGYEK-QVTNFSSDLKDGEAYAHLLNALAPEHCSPATFDTKDPTERASKVIEQAEK 338
K A Y+ + NF KDG + L++ PE DP + + AEK
Sbjct: 131 QRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEK 190
Query: 339 -MDCKRYLTPKDIV 351
+D + L +DIV
Sbjct: 191 YLDIPKMLDAEDIV 204
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 271 KVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPEHCS 316
K W N HL+KAG Q+ N D +DG LL ++ E +
Sbjct: 11 KTFTAWCNSHLRKAG--TQIENIEEDFRDGLKLMLLLEVISGERLA 54
>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.7 Angstrom Resolution
pdb|2EYN|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.8 Angstrom Resolution
Length = 234
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 26/234 (11%)
Query: 393 REERCFRLWINS--LGTATYVNNVFEDVRNGWVLLEVLDKVSPGSVSWKQATKPPI-KMP 449
++ + F W NS T + N+ ED R+G L+ +L+ +S ++ KP KM
Sbjct: 7 QQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISG-----ERLAKPERGKMR 61
Query: 450 FRKVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQ-LMRFTMLQLLKNLRTH 508
K+ N N+ + LV++ +IV GN K+ L +W ++RF + + +
Sbjct: 62 VHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSA 121
Query: 509 SQGKEITDTDILNWANRKVKKANRTSQIESFKDKNLSNGIFFLELLSAVEPRVVNWSLVT 568
+G +L W RK + I++F + +G+ F L+ P ++++ +
Sbjct: 122 KEG-------LLLWCQRKT-APYKNVNIQNFH-ISWKDGLGFCALIHRHRPELIDYGKLR 172
Query: 569 KGETEEDKKLNATYIISVARK-LGCSIFLLPEDIMEV---NQKMILILTASIMY 618
K +D N VA K L L EDI+ ++K I+ +S +
Sbjct: 173 K----DDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYH 222
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 27/194 (13%)
Query: 160 KDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAIGCTVVNIGTQDL 219
+DG+ L L+ V + G ER +R + N L+ + G +V+IG +++
Sbjct: 35 RDGLKLMLLLEV-ISG---ERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEI 90
Query: 220 VEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVELVDDNNDVEELLGLPPEKVLLKWMNF 279
V+G + LG+I II + D+++++T ++ LL W
Sbjct: 91 VDGNVKMTLGMIWTIILRFAIQDISVEET-------------------SAKEGLLLWC-- 129
Query: 280 HLKKAGYEK-QVTNFSSDLKDGEAYAHLLNALAPEHCSPATFDTKDPTERASKVIEQAEK 338
K A Y+ + NF KDG + L++ PE DP + + AEK
Sbjct: 130 QRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEK 189
Query: 339 -MDCKRYLTPKDIV 351
+D + L +DIV
Sbjct: 190 YLDIPKMLDAEDIV 203
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 271 KVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPEHCS 316
K W N HL+KAG Q+ N D +DG LL ++ E +
Sbjct: 10 KTFTAWCNSHLRKAG--TQIENIEEDFRDGLKLMLLLEVISGERLA 53
>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
pdb|2R0O|B Chain B, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
Length = 237
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 29/222 (13%)
Query: 389 AQTSREERCFRLWINS--LGTATYVNNVFEDVRNGWVLLEVLDKVSPGSVSWKQATKPPI 446
A ++ + F W NS T + N+ ED R+G L+ +L+ +S ++ KP
Sbjct: 8 AWEKQQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLEVISG-----ERLPKPER 62
Query: 447 -KMPFRKVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQ-LMRFTMLQLLKN 504
KM K+ N N+ + LV++ +IV GN K+ L +W ++RF + +
Sbjct: 63 GKMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTIILRFAIQDISVE 122
Query: 505 LRTHSQGKEITDTDILNWANRKV---KKANRTSQIESFKDKNLSNGIFFLELLSAVEPRV 561
+ +G +L W RK K N + S+KD G+ F L+ P +
Sbjct: 123 ETSAKEG-------LLLWCQRKTAPYKNVNVQNFHISWKD-----GLAFNALIHRHRPEL 170
Query: 562 VNWSLVTKGETEEDKKLNATYIISVARK-LGCSIFLLPEDIM 602
+ + + K +D N VA K L L EDI+
Sbjct: 171 IEYDKLRK----DDPVTNLNNAFEVAEKYLDIPKMLDAEDIV 208
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 208 GCTVVNIGTQDLVEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVELVDDNNDVEELLGL 267
G +V+IG +++V+G + LG+I II + D+++++T
Sbjct: 84 GVKLVSIGAEEIVDGNAKMTLGMIWTIILRFAIQDISVEET------------------- 124
Query: 268 PPEKVLLKWMNFHLKKAGYEK-QVTNFSSDLKDGEAYAHLLNALAPEHCSPATFDTKDPT 326
++ LL W K A Y+ V NF KDG A+ L++ PE DP
Sbjct: 125 SAKEGLLLWC--QRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPELIEYDKLRKDDPV 182
Query: 327 ERASKVIEQAEK-MDCKRYLTPKDIV 351
+ E AEK +D + L +DIV
Sbjct: 183 TNLNNAFEVAEKYLDIPKMLDAEDIV 208
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 271 KVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPE 313
K W N HL+KAG Q+ N D +DG LL ++ E
Sbjct: 15 KTFTAWCNSHLRKAG--TQIENIDEDFRDGLKLMLLLEVISGE 55
>pdb|3LUE|K Chain K, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|M Chain M, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|L Chain L, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|O Chain O, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|N Chain N, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|Q Chain Q, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|P Chain P, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|S Chain S, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|R Chain R, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|T Chain T, Model Of Alpha-Actinin Ch1 Bound To F-Actin
Length = 109
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 389 AQTSREERCFRLWINS--LGTATYVNNVFEDVRNGWVLLEVLDKVSPGSVSWKQATKP-P 445
A ++ + F W NS T + N+ ED RNG L+ +L+ +S ++ +P
Sbjct: 1 AWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISG-----ERLPRPDK 55
Query: 446 IKMPFRKVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQ-LMRFTM 498
KM F K+ N N+ + LV++ +IV GN K+ L +W ++RF +
Sbjct: 56 GKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAI 109
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 270 EKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPEH 314
K W N HL+KAG Q+ N D ++G LL ++ E
Sbjct: 7 RKTFTAWCNSHLRKAGT--QIENIEEDFRNGLKLMLLLEVISGER 49
>pdb|2WA7|A Chain A, Structure Of The M202v Mutant Of Human Filamin B Actin
Binding Domain At 1.85 Angstroms Resolution
Length = 245
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 80/159 (50%), Gaps = 17/159 (10%)
Query: 195 ENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVEL 254
EN ++ L +V+I ++ +V+G L+LGL+ +I L + +
Sbjct: 81 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLI---------LHYSISMPVW 131
Query: 255 VDDNNDVEELLGLPPEKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPEH 314
D+ +D + P++ LL W+ K Y +TNF+ + +DG+A L+++ AP
Sbjct: 132 EDEGDD--DAKKQTPKQRLLGWIQ---NKIPYLP-ITNFNQNWQDGKALGALVDSCAPGL 185
Query: 315 CSP-ATFDTKDPTERASKVIEQAEK-MDCKRYLTPKDIV 351
C ++D + P + A + ++QA+ + + +TP++I+
Sbjct: 186 CPDWESWDPQKPVDNAREAVQQADDWLGVPQVITPEEII 224
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 411 VNNVFEDVRNGWVLLEVLDKVSPGSVSWKQATKPPIKMPFRKVENCNQVVKIGKELNFSL 470
+ N+ D+ +G L+ +L+ +S + K +P + ++EN + ++ + L
Sbjct: 40 IGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQ--MQLENVSVALEFLDRESIKL 97
Query: 471 VNVAGNDIVQGNKKLILAFLWQLM 494
V++ IV GN KLIL +W L+
Sbjct: 98 VSIDSKAIVDGNLKLILGLVWTLI 121
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 270 EKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPE------HCSPATFDTK 323
+ +W N HLK K++ N +DL DG LL L+ + H P TF
Sbjct: 22 QNTFTRWCNEHLKCVN--KRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRP-TFRQM 78
Query: 324 DPTERASKVIEQAEKMDCKRY-LTPKDIVEGSPNLNLAFVAHIFQHRNGLSMDSNKISFA 382
E S +E ++ K + K IV+G+ L L V + H + +SM +
Sbjct: 79 Q-LENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYS-ISMP----VWE 132
Query: 383 EMMTDDAQTSREERCFRLWINSLGTATYVNNVFEDVRNGWVLLEVLDKVSPG 434
+ DDA+ ++ WI + + N ++ ++G L ++D +PG
Sbjct: 133 DEGDDDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPG 184
>pdb|2WA5|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
At 1.9 Angstroms Resolution
Length = 245
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 80/159 (50%), Gaps = 17/159 (10%)
Query: 195 ENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVEL 254
EN ++ L +V+I ++ +V+G L+LGL+ +I L + +
Sbjct: 81 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLI---------LHYSISMPVW 131
Query: 255 VDDNNDVEELLGLPPEKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPEH 314
D+ +D + P++ LL W+ K Y +TNF+ + +DG+A L+++ AP
Sbjct: 132 EDEGDD--DAKKQTPKQRLLGWIQ---NKIPYLP-ITNFNQNWQDGKALGALVDSCAPGL 185
Query: 315 CSP-ATFDTKDPTERASKVIEQAEK-MDCKRYLTPKDIV 351
C ++D + P + A + ++QA+ + + +TP++I+
Sbjct: 186 CPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEII 224
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 411 VNNVFEDVRNGWVLLEVLDKVSPGSVSWKQATKPPIKMPFRKVENCNQVVKIGKELNFSL 470
+ N+ D+ +G L+ +L+ +S + K +P + ++EN + ++ + L
Sbjct: 40 IGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQ--MQLENVSVALEFLDRESIKL 97
Query: 471 VNVAGNDIVQGNKKLILAFLWQLM 494
V++ IV GN KLIL +W L+
Sbjct: 98 VSIDSKAIVDGNLKLILGLVWTLI 121
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 270 EKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPE------HCSPATFDTK 323
+ +W N HLK K++ N +DL DG LL L+ + H P TF
Sbjct: 22 QNTFTRWCNEHLKCVN--KRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRP-TFRQM 78
Query: 324 DPTERASKVIEQAEKMDCKRY-LTPKDIVEGSPNLNLAFVAHIFQHRNGLSMDSNKISFA 382
E S +E ++ K + K IV+G+ L L V + H + +SM +
Sbjct: 79 Q-LENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYS-ISMP----VWE 132
Query: 383 EMMTDDAQTSREERCFRLWINSLGTATYVNNVFEDVRNGWVLLEVLDKVSPG 434
+ DDA+ ++ WI + + N ++ ++G L ++D +PG
Sbjct: 133 DEGDDDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPG 184
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
pdb|4B7L|B Chain B, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
Length = 347
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 82/159 (51%), Gaps = 17/159 (10%)
Query: 195 ENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVEL 254
EN ++ L +V+I ++ +V+G L+LGL+ +I L +++ P +
Sbjct: 78 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLI---LHYSISM---PVWEDE 131
Query: 255 VDDNNDVEELLGLPPEKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPEH 314
DD+ + P++ LL W+ K Y +TNF+ + +DG+A L+++ AP
Sbjct: 132 GDDDAKKQT-----PKQRLLGWIQ---NKIPYLP-ITNFNQNWQDGKALGALVDSCAPGL 182
Query: 315 CSP-ATFDTKDPTERASKVIEQAEK-MDCKRYLTPKDIV 351
C ++D + P + A + ++QA+ + + +TP++I+
Sbjct: 183 CPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEII 221
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 394 EERCFRLWINSL--GTATYVNNVFEDVRNGWVLLEVLDKVSPGSVSWKQATKPPIKMPFR 451
++ F W N + N+ D+ +G L+ +L+ +S + K +P +
Sbjct: 18 QQNTFTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQ--M 75
Query: 452 KVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQLM 494
++EN + ++ + LV++ IV GN KLIL +W L+
Sbjct: 76 QLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLI 118
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 270 EKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPE------HCSPATFDTK 323
+ +W N HLK K++ N +DL DG LL L+ + H P TF
Sbjct: 19 QNTFTRWCNEHLKSVN--KRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRP-TFRQM 75
Query: 324 DPTERASKVIEQAEKMDCKRY-LTPKDIVEGSPNLNLAFVAHIFQHRNGLSMDSNKISFA 382
E S +E ++ K + K IV+G+ L L V + H + +SM +
Sbjct: 76 Q-LENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYS-ISMP----VWE 129
Query: 383 EMMTDDAQTSREERCFRLWINSLGTATYVNNVFEDVRNGWVLLEVLDKVSPG 434
+ DDA+ ++ WI + + N ++ ++G L ++D +PG
Sbjct: 130 DEGDDDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPG 181
>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
pdb|3HOC|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
Length = 272
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 27/203 (13%)
Query: 161 DGVLLCKLINVAVPGTIDERAINTKRVLNPWERN---ENHTLCLNSAKAIGCTVVNIGTQ 217
DG+ L L+ V + ++ ++ K P R EN ++ L +V+I ++
Sbjct: 76 DGLRLIALLEV-----LSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRESIKLVSIDSK 130
Query: 218 DLVEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVELVDDNNDVEELLGLPPEKVLLKWM 277
+V+G L+LGLI +I L +++ P E D+ + P++ LL W+
Sbjct: 131 AIVDGNLKLILGLIWTLI---LHYSISM---PMWDEEEDEEAKKQT-----PKQRLLGWI 179
Query: 278 NFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPEHCSP-ATFDTKDPTERASKVIEQA 336
L + +TNFS D + G A L+++ AP C ++D P A + ++QA
Sbjct: 180 QNKLPQLP----ITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQA 235
Query: 337 EK-MDCKRYLTPKDIVEGSPNLN 358
+ + + +TP++IV+ PN++
Sbjct: 236 DDWLGIPQVITPEEIVD--PNVD 256
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 394 EERCFRLWINSL--GTATYVNNVFEDVRNGWVLLEVLDKVSPGSVSWKQATKPPIKMPFR 451
++ F W N + + N+ D+ +G L+ +L+ +S + K +P +
Sbjct: 48 QQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQ--M 105
Query: 452 KVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQLM 494
++EN + ++ + LV++ IV GN KLIL +W L+
Sbjct: 106 QLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLI 148
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 19/185 (10%)
Query: 270 EKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAP-----EHCSPATFDTKD 324
+ +W N HLK K++ N +DL DG LL L+ +H TF
Sbjct: 49 QNTFTRWCNEHLK--CVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQ 106
Query: 325 PTERASKVIEQAEKMDCKRY-LTPKDIVEGSPNLNLAFVAHIFQHRNGLSMDSNKISFAE 383
E S +E ++ K + K IV+G+ L L + + H + +SM + E
Sbjct: 107 -LENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYS-ISMP----MWDE 160
Query: 384 MMTDDAQTSREERCFRLWINSLGTATYVNNVFEDVRNGWVLLEVLDKVSPGSV----SWK 439
++A+ ++ WI + + N D ++G L ++D +PG SW
Sbjct: 161 EEDEEAKKQTPKQRLLGWIQNKLPQLPITNFSRDWQSGRALGALVDSCAPGLCPDWDSW- 219
Query: 440 QATKP 444
A+KP
Sbjct: 220 DASKP 224
>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOP|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOR|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
pdb|3HOR|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
Length = 272
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 27/203 (13%)
Query: 161 DGVLLCKLINVAVPGTIDERAINTKRVLNPWERN---ENHTLCLNSAKAIGCTVVNIGTQ 217
DG+ L L+ V + ++ ++ K P R EN ++ L +V+I ++
Sbjct: 76 DGLRLIALLEV-----LSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRESIKLVSIDSK 130
Query: 218 DLVEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVELVDDNNDVEELLGLPPEKVLLKWM 277
+V+G L+LGLI +I L +++ P E D+ + P++ LL W+
Sbjct: 131 AIVDGNLKLILGLIWTLI---LHYSISM---PMWDEEEDEEAKKQT-----PKQRLLGWI 179
Query: 278 NFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPEHCSP-ATFDTKDPTERASKVIEQA 336
L + +TNFS D + G A L+++ AP C ++D P A + ++QA
Sbjct: 180 QNKLPQLP----ITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQA 235
Query: 337 EK-MDCKRYLTPKDIVEGSPNLN 358
+ + + +TP++IV+ PN++
Sbjct: 236 DDWLGIPQVITPEEIVD--PNVD 256
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 394 EERCFRLWINSL--GTATYVNNVFEDVRNGWVLLEVLDKVSPGSVSWKQATKPPIKMPFR 451
++ F W N + + N+ D+ +G L+ +L+ +S + K +P +
Sbjct: 48 QQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQ--M 105
Query: 452 KVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQLM 494
++EN + ++ + LV++ IV GN KLIL +W L+
Sbjct: 106 QLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLI 148
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 19/185 (10%)
Query: 270 EKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAP-----EHCSPATFDTKD 324
+ +W N HLK K++ N +DL DG LL L+ +H TF
Sbjct: 49 QNTFTRWCNEHLK--CVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQ 106
Query: 325 PTERASKVIEQAEKMDCKRY-LTPKDIVEGSPNLNLAFVAHIFQHRNGLSMDSNKISFAE 383
E S +E ++ K + K IV+G+ L L + + H + +SM + E
Sbjct: 107 -LENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYS-ISMP----MWDE 160
Query: 384 MMTDDAQTSREERCFRLWINSLGTATYVNNVFEDVRNGWVLLEVLDKVSPGSV----SWK 439
++A+ ++ WI + + N D ++G L ++D +PG SW
Sbjct: 161 EEDEEAKKQTPKQRLLGWIQNKLPQLPITNFSRDWQSGRALGALVDSCAPGLCPDWDSW- 219
Query: 440 QATKP 444
A+KP
Sbjct: 220 DASKP 224
>pdb|3FER|A Chain A, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|B Chain B, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|C Chain C, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a.
pdb|3FER|D Chain D, Crystal Structure Of N-Terminal Actin-Binding Domain From
Human Filamin B (Tandem Ch-Domains). Northeast
Structural Genomics Consortium Target Hr5571a
Length = 262
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 81/159 (50%), Gaps = 17/159 (10%)
Query: 195 ENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVEL 254
EN ++ L +V+I ++ +V+G L+LGL+ +I L+ + + E
Sbjct: 88 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLI-------LHYSISXPVWED 140
Query: 255 VDDNNDVEELLGLPPEKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPEH 314
D++ ++ P++ LL W+ K Y +TNF+ + +DG+A L+++ AP
Sbjct: 141 EGDDDAKKQT----PKQRLLGWIQ---NKIPYLP-ITNFNQNWQDGKALGALVDSCAPGL 192
Query: 315 CSP-ATFDTKDPTERASKVIEQAEK-MDCKRYLTPKDIV 351
C ++D + P + A + +QA+ + + +TP++I+
Sbjct: 193 CPDWESWDPQKPVDNAREAXQQADDWLGVPQVITPEEII 231
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 385 MTDDAQTSR-EERCFRLWINSLGTAT--YVNNVFEDVRNGWVLLEVLDKVSPGSVSWKQA 441
+ +DA + ++ F W N + N+ D+ +G L+ +L+ +S K
Sbjct: 18 LAEDAPWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRXYRKYH 77
Query: 442 TKPPIKMPFRKVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQLM 494
+P + ++EN + ++ + LV++ IV GN KLIL +W L+
Sbjct: 78 QRPTFRQ--XQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLI 128
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 16/172 (9%)
Query: 270 EKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPE------HCSPATFDTK 323
+ +W N HLK K++ N +DL DG LL L+ + H P TF +
Sbjct: 29 QNTFTRWCNEHLKCVN--KRIGNLQTDLSDGLRLIALLEVLSQKRXYRKYHQRP-TF-RQ 84
Query: 324 DPTERASKVIEQAEKMDCKRY-LTPKDIVEGSPNLNLAFVAHIFQHRNGLSMDSNKISFA 382
E S +E ++ K + K IV+G+ L L V + H + + +
Sbjct: 85 XQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYS-----ISXPVWE 139
Query: 383 EMMTDDAQTSREERCFRLWINSLGTATYVNNVFEDVRNGWVLLEVLDKVSPG 434
+ DDA+ ++ WI + + N ++ ++G L ++D +PG
Sbjct: 140 DEGDDDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPG 191
>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain
pdb|2WFN|B Chain B, Filamin A Actin Binding Domain
Length = 278
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 27/203 (13%)
Query: 161 DGVLLCKLINVAVPGTIDERAINTKRVLNPWERN---ENHTLCLNSAKAIGCTVVNIGTQ 217
DG+ L L+ V + ++ ++ K P R EN ++ L +V+I ++
Sbjct: 73 DGLRLIALLEV-----LSQKKMHRKHNQRPTFRQMQLENVSVALEFLDRESIKLVSIDSK 127
Query: 218 DLVEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVELVDDNNDVEELLGLPPEKVLLKWM 277
+V+G L+LGLI +I L +++ P E D+ + P++ LL W+
Sbjct: 128 AIVDGNLKLILGLIWTLI---LHYSISM---PMWDEEEDEEAKKQT-----PKQRLLGWI 176
Query: 278 NFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPEHCSP-ATFDTKDPTERASKVIEQA 336
L + +TNFS D + G A L+++ AP C ++D P A + ++QA
Sbjct: 177 QNKLPQLP----ITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQA 232
Query: 337 EK-MDCKRYLTPKDIVEGSPNLN 358
+ + + +TP++IV+ PN++
Sbjct: 233 DDWLGIPQVITPEEIVD--PNVD 253
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 394 EERCFRLWINSL--GTATYVNNVFEDVRNGWVLLEVLDKVSPGSVSWKQATKPPIKMPFR 451
++ F W N + + N+ D+ +G L+ +L+ +S + K +P +
Sbjct: 45 QQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQ--M 102
Query: 452 KVENCNQVVKIGKELNFSLVNVAGNDIVQGNKKLILAFLWQLM 494
++EN + ++ + LV++ IV GN KLIL +W L+
Sbjct: 103 QLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLI 145
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 19/185 (10%)
Query: 270 EKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAP-----EHCSPATFDTKD 324
+ +W N HLK K++ N +DL DG LL L+ +H TF
Sbjct: 46 QNTFTRWCNEHLK--CVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQ 103
Query: 325 PTERASKVIEQAEKMDCKRY-LTPKDIVEGSPNLNLAFVAHIFQHRNGLSMDSNKISFAE 383
E S +E ++ K + K IV+G+ L L + + H + +SM + E
Sbjct: 104 -LENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYS-ISMP----MWDE 157
Query: 384 MMTDDAQTSREERCFRLWINSLGTATYVNNVFEDVRNGWVLLEVLDKVSPGSV----SWK 439
++A+ ++ WI + + N D ++G L ++D +PG SW
Sbjct: 158 EEDEEAKKQTPKQRLLGWIQNKLPQLPITNFSRDWQSGRALGALVDSCAPGLCPDWDSW- 216
Query: 440 QATKP 444
A+KP
Sbjct: 217 DASKP 221
>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin
Binding Domain At 1.95 Angstroms Resolution
Length = 245
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 80/159 (50%), Gaps = 17/159 (10%)
Query: 195 ENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVEL 254
EN ++ L +V+I ++ +V+G L+LGL+ +I ++ + +
Sbjct: 81 ENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSIS----------MPV 130
Query: 255 VDDNNDVEELLGLPPEKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPEH 314
+D D + P +++L + N K Y +TNF+ + +DG+A L+++ AP
Sbjct: 131 WEDEGDDDAKKQTPKQRLLGRIQN----KIPYLP-ITNFNQNWQDGKALGALVDSCAPGL 185
Query: 315 CSP-ATFDTKDPTERASKVIEQAEK-MDCKRYLTPKDIV 351
C ++D + P + A + ++QA+ + + +TP++I+
Sbjct: 186 CPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEII 224
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 411 VNNVFEDVRNGWVLLEVLDKVSPGSVSWKQATKPPIKMPFRKVENCNQVVKIGKELNFSL 470
+ N+ D+ +G L+ +L+ +S + K +P + ++EN + ++ + L
Sbjct: 40 IGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQ--MQLENVSVALEFLDRESIKL 97
Query: 471 VNVAGNDIVQGNKKLILAFLWQLM 494
V++ IV GN KLIL +W L+
Sbjct: 98 VSIDSKAIVDGNLKLILGLVWTLI 121
>pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin
Length = 108
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 395 ERCFRLWINSLGTATYVNNVFEDVRNGWVLLEVLDKVSPGSVSWKQATKPPIKMPFRKVE 454
ER R+WI +N + +++G +L E+++K+ PGSV Q P++ + K+E
Sbjct: 5 ERQLRVWIEGATGRRIGDNFMDGLKDGVILCELINKLQPGSV---QKVNDPVQ-NWHKLE 60
Query: 455 NCNQVVK 461
N ++
Sbjct: 61 NIGNFLR 67
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 155 LFDLAKDGVLLCKLINVAVPGTIDERAINTKRVLNP---WERNENHTLCLNSAKAIGCTV 211
D KDGV+LC+LIN PG++ ++V +P W + EN L + K G
Sbjct: 24 FMDGLKDGVILCELINKLQPGSV-------QKVNDPVQNWHKLENIGNFLRAIKHYGVKP 76
Query: 212 VNI-GTQDLVEGRPH-----LLLGLISQ 233
+I DL E H L+ L SQ
Sbjct: 77 HDIFEANDLFENTNHTQVQSTLIALASQ 104
>pdb|1WYM|A Chain A, Solution Structure Of The Ch Domain Of Human Transgelin-2
Length = 155
Score = 35.8 bits (81), Expect = 0.083, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 270 EKVLLKWMNFHLKKAGYEKQV--TNFSSDLKDGEAYAHLLNALAPEHCSP-----ATFDT 322
E++L++W+ +K Q NF + LKDG L+NAL PE +P A+
Sbjct: 19 EQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMA 78
Query: 323 KDPTERASKVIEQAEK--MDCKRYLTPKDIVEGSPNLNLAFVAHIFQHRNGLSM 374
E+ S+ ++ AE+ ++ D+ EG N+A V + GL++
Sbjct: 79 FKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK---NMACVQRTLMNLGGLAV 129
>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin
Splice Isoform L2
Length = 128
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 270 EKVLLKWMNFHLKKAGYEK-QVTNFSSDLKDGEAYAHLLNALAPEHCSPATFDTKDPTER 328
+++LL W K GYE + NFSS DG A+ L++ PE ++ +
Sbjct: 9 KQMLLDWC--RAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQN 66
Query: 329 ASKVIEQAEK-MDCKRYLTPKDIV 351
AE DC + L +D+V
Sbjct: 67 FEVAFSSAETHADCPQLLDTEDMV 90
>pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1
Length = 136
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 393 REERCFRLWINSLGTATYVNNVFEDVRNGWVLLEVLDKVSPGSV 436
+ E+ R WI + NN + +++G +L E ++K+ PGSV
Sbjct: 17 QREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFINKLQPGSV 60
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 153 NALFDLAKDGVLLCKLINVAVPGTI 177
N D KDG++LC+ IN PG++
Sbjct: 36 NNFMDGLKDGIILCEFINKLQPGSV 60
>pdb|2YRN|A Chain A, Solution Structure Of The Ch Domain From Human Neuron
Navigator 2
Length = 129
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 270 EKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPEHCSPATFDTKDPTERA 329
+++ W N +L K+G+++ + + D+ DG A ++ +A E D +
Sbjct: 20 KRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIE----DINGCPKNR 75
Query: 330 SKVIEQAEKMDCKRYLTPKDI 350
S++IE + C +L K I
Sbjct: 76 SQMIENIDA--CLNFLAAKGI 94
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 160 KDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAIGCTVVNIGTQDL 219
KDG +LC L+N PG++ + IN R + W + EN + + + + G V DL
Sbjct: 43 KDGTILCTLMNKLQPGSVPK--IN--RSMQNWHQLENLSNFIKAMVSYGMNPV-----DL 93
Query: 220 VEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVELVD 256
E G ++Q +++ LLA KT L VD
Sbjct: 94 FEANDLFESGNMTQ-VQVSLLALAGKAKTKGLQSGVD 129
>pdb|1BHD|A Chain A, Second Calponin Homology Domain From Utrophin
pdb|1BHD|B Chain B, Second Calponin Homology Domain From Utrophin
Length = 118
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 270 EKVLLKWMNFHLKKAGYEKQVTNFSSDLKDGEAYAHLLNALAPEHCSPATFDTKDPTERA 329
EK+LL W+ + + V NF++ DG A+ +L+ P+ S P ER
Sbjct: 10 EKILLSWVR-QTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIERL 68
Query: 330 SKVIEQAEK-MDCKRYLTPKDIVEGSPN 356
+A+ + ++ L P+D+ P+
Sbjct: 69 EHAFSKAQTYLGIEKLLDPEDVAVRLPD 96
>pdb|2L3G|A Chain A, Solution Nmr Structure Of Ch Domain Of Rho Guanine
Nucleotide Exchange Factor 7 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr4495e
Length = 126
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 12/52 (23%)
Query: 160 KDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAI--GC 209
KDGV+LC+L+ +PGTI++ + P R+E+ CL++ + GC
Sbjct: 46 KDGVVLCRLLERLLPGTIEK--------VYPEPRSESE--CLSNIREFLRGC 87
>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine
Nucleotide Exchange Factor 6
Length = 121
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 160 KDGVLLCKLINVAVPGTIDERAINTK 185
K+GV+LCKLIN +PG++++ ++ +
Sbjct: 40 KNGVVLCKLINRLMPGSVEKFCLDPQ 65
>pdb|1QJZ|A Chain A, Three Dimensional Structure Of Physalis Mottle Virus:
Implications For The Viral Assembly
pdb|1QJZ|B Chain B, Three Dimensional Structure Of Physalis Mottle Virus:
Implications For The Viral Assembly
pdb|1QJZ|C Chain C, Three Dimensional Structure Of Physalis Mottle Virus:
Implications For The Viral Assembly
pdb|1E57|A Chain A, Physalis Mottle Virus: Empty Capsid
pdb|1E57|B Chain B, Physalis Mottle Virus: Empty Capsid
pdb|1E57|C Chain C, Physalis Mottle Virus: Empty Capsid
pdb|2XPJ|A Chain A, Crystal Structure Of Physalis Mottle Virus With Intact
Ordered Rna
pdb|2XPJ|B Chain B, Crystal Structure Of Physalis Mottle Virus With Intact
Ordered Rna
pdb|2XPJ|C Chain C, Crystal Structure Of Physalis Mottle Virus With Intact
Ordered Rna
pdb|2WWS|A Chain A, Physalis Mottle Virus: Natural Empty Capsid
pdb|2WWS|B Chain B, Physalis Mottle Virus: Natural Empty Capsid
pdb|2WWS|C Chain C, Physalis Mottle Virus: Natural Empty Capsid
Length = 188
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 313 EHCSPATFDTKDPTERASKVIEQAEKMDCKRYLTPKDIVEGSP 355
E + + T DP + + A+ ++CK LTP D+ +P
Sbjct: 47 ETAAQVSLQTADPITKLTAPYRHAQIVECKAILTPTDLAVSNP 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,082,601
Number of Sequences: 62578
Number of extensions: 702612
Number of successful extensions: 2041
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1902
Number of HSP's gapped (non-prelim): 118
length of query: 677
length of database: 14,973,337
effective HSP length: 105
effective length of query: 572
effective length of database: 8,402,647
effective search space: 4806314084
effective search space used: 4806314084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)