Query 005778
Match_columns 677
No_of_seqs 256 out of 761
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 07:14:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 3E-121 1E-125 1016.6 44.7 492 8-501 12-510 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 2E-116 8E-121 980.7 46.8 480 13-497 4-530 (530)
3 4fh3_A Poly(A) RNA polymerase 100.0 2.3E-50 7.8E-55 426.4 25.8 279 35-361 13-348 (349)
4 2ikf_A RNA uridylyl transferas 100.0 7.7E-51 2.6E-55 433.5 19.2 284 14-346 10-349 (353)
5 4e8f_A Poly(A) RNA polymerase 100.0 1.1E-48 3.6E-53 424.8 27.6 305 14-368 24-383 (405)
6 3nyb_A Poly(A) RNA polymerase 100.0 3.6E-48 1.2E-52 409.1 23.1 268 32-348 19-299 (323)
7 2b4v_A RNA editing complex pro 100.0 9.4E-40 3.2E-44 360.1 21.4 304 26-349 11-441 (468)
8 3hj4_A Minor editosome-associa 100.0 2.9E-37 1E-41 331.8 23.2 280 32-361 5-379 (384)
9 3pq1_A Poly(A) RNA polymerase; 100.0 2.2E-36 7.5E-41 332.3 26.4 249 35-362 135-460 (464)
10 1r89_A TRNA nucleotidyltransfe 99.3 9.4E-11 3.2E-15 128.3 22.5 333 37-460 6-360 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.1 1.2E-08 4.2E-13 108.2 23.7 271 36-337 9-322 (349)
12 4at7_A Interleukin enhancer-bi 98.0 0.001 3.6E-08 71.1 24.3 267 26-345 19-295 (364)
13 4at7_B NF90, interleukin enhan 97.3 0.017 5.9E-07 62.3 20.3 262 45-345 21-327 (383)
14 1no5_A Hypothetical protein HI 97.2 0.0011 3.6E-08 59.5 9.1 30 91-120 28-57 (114)
15 2rff_A Putative nucleotidyltra 97.0 0.002 6.8E-08 58.0 8.1 53 55-119 10-62 (111)
16 1wot_A Putative minimal nucleo 96.9 0.0015 5.2E-08 57.1 6.6 48 59-119 7-54 (98)
17 1ylq_A Putative nucleotidyltra 96.7 0.0037 1.3E-07 54.4 7.6 28 91-118 18-46 (96)
18 4ebj_A Aminoglycoside nucleoti 94.7 0.036 1.2E-06 56.9 6.0 54 53-118 15-68 (272)
19 1kny_A Kntase, kanamycin nucle 94.2 0.041 1.4E-06 55.7 5.0 29 91-119 32-60 (253)
20 2fmp_A DNA polymerase beta; nu 93.8 0.43 1.5E-05 50.5 12.2 117 89-240 171-298 (335)
21 2bcq_A DNA polymerase lambda; 92.3 0.58 2E-05 49.6 10.5 116 89-240 168-292 (335)
22 3jz0_A Lincosamide nucleotidyl 89.5 0.85 2.9E-05 47.5 8.3 105 45-172 12-117 (287)
23 1jaj_A DNA polymerase beta-lik 88.5 0.68 2.3E-05 44.9 6.3 114 83-240 24-142 (174)
24 2ihm_A POL MU, DNA polymerase 87.3 2 7E-05 45.8 9.7 51 89-141 175-225 (360)
25 1jms_A Terminal deoxynucleotid 84.1 5.5 0.00019 42.9 11.2 52 89-141 195-247 (381)
26 3b0x_A DNA polymerase beta fam 81.9 4.7 0.00016 45.4 10.0 107 90-241 180-286 (575)
27 1v4a_A Glutamate-ammonia-ligas 71.7 7 0.00024 42.7 7.5 48 89-136 153-208 (440)
28 2fcl_A Hypothetical protein TM 63.4 11 0.00036 36.1 6.0 71 89-168 32-107 (169)
29 3k7d_A Glutamate-ammonia-ligas 59.4 21 0.00071 39.8 8.2 61 76-136 218-289 (498)
30 2pbe_A AAD6, aminoglycoside 6- 52.0 19 0.00065 37.2 6.0 74 91-172 24-111 (294)
31 2w9m_A Polymerase X; SAXS, DNA 46.4 29 0.001 39.0 6.9 94 93-241 182-276 (578)
32 3ukx_C Bimax2 peptide; arm rep 20.1 60 0.0021 22.0 2.1 20 518-538 6-25 (28)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=3.3e-121 Score=1016.63 Aligned_cols=492 Identities=42% Similarity=0.760 Sum_probs=451.0
Q ss_pred CCCCCCCCCCCCCCCcCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Q 005778 8 SSPPPPKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVE 87 (677)
Q Consensus 8 ~s~~~~~~~Gvt~Pis~~~Pt~~d~~~t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~ 87 (677)
++.+++++||||+|||+++||++|+++|.+|+++|++++++||+||.++|++|+++|+++|++|++++++++|++++++.
T Consensus 12 ~~~~~~~~~g~~~pis~~~p~~~d~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~ 91 (514)
T 1q79_A 12 QTQPPQKHYGITSPISLAAPKETDALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIE 91 (514)
T ss_dssp -------CCSSSCCSCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccCCcccccCCCCCCcCCCCCHHHHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhcc
Confidence 44456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEeccccccCcCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCceEEEeccCccceEEEEecCceeeEee
Q 005778 88 DANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLY 167 (677)
Q Consensus 88 ~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~I~~ArVPIIKf~~~GI~iDLsf 167 (677)
+++++|++||||++|+|+|+||||++|++|.+++++ +||..++++|++.++++++++|++|+||||||++.||+|||+|
T Consensus 92 ~~~~~v~~FGS~~lG~~~p~SDID~~~v~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f 170 (514)
T 1q79_A 92 NVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILF 170 (514)
T ss_dssp TCBCEEEEEHHHHHTCCCTTCCEEEEEEECTTSCHH-HHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEE
T ss_pred cCCceEEEeeeeccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCccCceEEEecCCcccEEEEEECCeeEEEEE
Confidence 999999999999999999999999999999999985 9999999999999999999999999999999999999999999
Q ss_pred eeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCCCCCccHHHHH
Q 005778 168 ASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWA 247 (677)
Q Consensus 168 a~l~~~~~p~~l~i~~~~~L~~lDe~s~rSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swa 247 (677)
|+++...+|+++++.|+++|++||+++++||||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+
T Consensus 171 ~~~~~~~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~ 250 (514)
T 1q79_A 171 ARLALQTIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWA 250 (514)
T ss_dssp EECSCSSBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHH
T ss_pred ecCCcccCcccccCCchhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCCCceeecccccccCCcccccCCCCCCCCCCceEEeCCCCCCCCccCccC
Q 005778 248 LLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVS 327 (677)
Q Consensus 248 LLVa~vcQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~l~~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs 327 (677)
||||++||+|||+++++||.+||++|++|||++||++++++++.+++++|+|+.+++|+.|+|||+||++|++|+|+||+
T Consensus 251 lLVa~~~Ql~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs 330 (514)
T 1q79_A 251 MLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVS 330 (514)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCCcccccCC
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhcCCcccccccccchhhhcccEEEEEEEecChhhhhhhhhHHHHHHHHHHHHHhhccc
Q 005778 328 TSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTY 407 (677)
Q Consensus 328 ~sTlrvI~~EF~Ra~~Il~~i~~~~~~W~~Lf~p~~Ff~~Yk~yl~I~v~a~~~e~~~~w~GwVESrlR~Lv~~LE~~~~ 407 (677)
.+|+++|++||+||+++|+++..++.+|++||+|++||.+|+|||+|+|++.+++++.+|.||||||||.|+.+||+..
T Consensus 331 ~st~~~I~~Ef~rA~~il~~i~~~~~~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~~- 409 (514)
T 1q79_A 331 VSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNE- 409 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTST-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHHHhccCC-
Confidence 9999999999999999999999888999999999999999999999999999999999999999999999999999853
Q ss_pred CceeeccCCCCCCCCCC----CCceeEEEEeeeeCC---CCccCCCceecchHHHHHHHHHHhhccccCCceEEEEEeec
Q 005778 408 GKLQCHPYPHEYVDTSK----PCAHCAFFMGLQRKP---GEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGMEICVSHIR 480 (677)
Q Consensus 408 ~~l~ahp~P~~f~~~~~----~~~~~~ffIGL~~~~---~~~~~~~~~~dl~~~v~eF~~~i~~~~~~~~~m~i~v~~vk 480 (677)
++..|||||++|.+... ..|.++|||||.++. ....+.+.++||+.++++|++.+++|..|+++|+|+|+|||
T Consensus 410 ~i~~a~~~P~~f~~~~~~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~i~v~~vk 489 (514)
T 1q79_A 410 FITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVK 489 (514)
T ss_dssp TEEEEEECSCCEECCCSCTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEE
T ss_pred CceeeecCccccCCccccccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcEEEEEEec
Confidence 44559999999977643 357889999999865 22223456799999999999999999999999999999999
Q ss_pred cCCCCCCcCCCCccccCCCcc
Q 005778 481 RKQIPPYVFPEGYKRTRHPRL 501 (677)
Q Consensus 481 r~~LP~~v~~~g~~~~~~~~~ 501 (677)
+++||++||++|++|+|+.+.
T Consensus 490 ~~~Lp~~v~~~~~~~~~~~~~ 510 (514)
T 1q79_A 490 RKQLHQLLPSHVLQKKKKHST 510 (514)
T ss_dssp HHHHGGGCC------------
T ss_pred hHHCchhhcchhccCCCCCCc
Confidence 999999999999988887643
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=2.4e-116 Score=980.67 Aligned_cols=480 Identities=39% Similarity=0.718 Sum_probs=455.1
Q ss_pred CCCCCCCCCCcCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeE
Q 005778 13 PKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANAL 92 (677)
Q Consensus 13 ~~~~Gvt~Pis~~~Pt~~d~~~t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~ 92 (677)
+++||||+|||+++||++|++++.+|+++|++++++||+||.++|++|+++|+++|++|++++++++|++++++.+++++
T Consensus 4 ~~~~g~t~pis~~~p~~~d~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~ 83 (530)
T 2hhp_A 4 QKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGK 83 (530)
T ss_dssp CGGGCSSCCSCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCE
T ss_pred cccCccCCCCcCCCCChHHhhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCce
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCcCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCceEEEeccCccceEEEEecCceeeEeeeeccc
Q 005778 93 IFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISR 172 (677)
Q Consensus 93 I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~ 172 (677)
|++||||++|+|+|+||||++|++|.+++++ +||..++++|++.++++++++|++|+||||||+++||+|||+|++++.
T Consensus 84 V~~FGSy~lG~~~p~SDID~~v~~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~ 162 (530)
T 2hhp_A 84 IFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQ 162 (530)
T ss_dssp EEEEHHHHHTCCCTTCCEEEEEEECTTCCHH-HHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSS
T ss_pred EEEecccccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCCCCceEEEecCCcccEEEEEECCEeeEEEEecccc
Confidence 9999999999999999999999999999985 999999999999899999999999999999999999999999999988
Q ss_pred cccccccccccccccCCCCcccccccchhhHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH
Q 005778 173 LVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVAR 252 (677)
Q Consensus 173 ~~~p~~l~i~~~~~L~~lDe~s~rSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~ 252 (677)
..+|+++++.++++|++||++|++||||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+||||+
T Consensus 163 ~~ip~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~ 242 (530)
T 2hhp_A 163 PQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVAR 242 (530)
T ss_dssp SCBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHH
T ss_pred ccCCcccCCCchhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHHhhcCCCCCceeecccccccCCcccccCCCCCCCCCCceEEeCCCCCCCCccCccCHhhHH
Q 005778 253 VCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLR 332 (677)
Q Consensus 253 vcQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~l~~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlr 332 (677)
+||+||++++++||.+||++|++|||++||++++++++.+++++|+|+.|.+|+.|+|||+||++|++|+|+||+.+|++
T Consensus 243 ~lQl~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~ 322 (530)
T 2hhp_A 243 ICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKK 322 (530)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHH
Confidence 99999999999999999999999999999999998888888999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcccccccccchhhhcccEEEEEEEec-ChhhhhhhhhHHHHHHHHHHHHHhhcccCcee
Q 005778 333 VMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAA-NADDLLAWKGWVESRLRQLTLMIERDTYGKLQ 411 (677)
Q Consensus 333 vI~~EF~Ra~~Il~~i~~~~~~W~~Lf~p~~Ff~~Yk~yl~I~v~a~-~~e~~~~w~GwVESrlR~Lv~~LE~~~~~~l~ 411 (677)
+|++||+||+++|+++..++.+|.+||+|++||.+|+|||+|+++++ +++++..|.||||||+|.|+.+||+ .+++..
T Consensus 323 ~I~~Ef~rA~~ll~~i~~~~~~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~-~~~i~~ 401 (530)
T 2hhp_A 323 VILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV-LAGIKI 401 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHT-STTEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhc-ccCcee
Confidence 99999999999999998888999999999999999999999999998 9999999999999999999999998 557778
Q ss_pred eccCCCCCCCCC-------------------------------------------CCCceeEEEEeeeeCCCCccCCCce
Q 005778 412 CHPYPHEYVDTS-------------------------------------------KPCAHCAFFMGLQRKPGEVVQEGQQ 448 (677)
Q Consensus 412 ahp~P~~f~~~~-------------------------------------------~~~~~~~ffIGL~~~~~~~~~~~~~ 448 (677)
|||||++|.+.. ...+.++|||||.++.. +.+++
T Consensus 402 a~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~---~~~~~ 478 (530)
T 2hhp_A 402 AHPFTKPFESSYCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKKEK 478 (530)
T ss_dssp EEECSSCEEEEEECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC-------CCC
T ss_pred eecCCcccCccccccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCC---CCCce
Confidence 999999984310 12356899999998753 23568
Q ss_pred ecchHHHHHHHHHHhhccc-cCCc-eE-EEEEeeccCCCCCCcCCCCccccC
Q 005778 449 FDIRGSVEEFKLSINMYMF-WKPG-ME-ICVSHIRRKQIPPYVFPEGYKRTR 497 (677)
Q Consensus 449 ~dl~~~v~eF~~~i~~~~~-~~~~-m~-i~v~~vkr~~LP~~v~~~g~~~~~ 497 (677)
+||+.++++|++.|++|.. |+++ |+ |.|+|||+++||++||++|++|++
T Consensus 479 ~di~~~~~~F~~~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~~~~ 530 (530)
T 2hhp_A 479 VDIHIPCTEFVNLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKRPS 530 (530)
T ss_dssp CCCHHHHHHHHHHHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSCCCC
T ss_pred EeChhHHHHHHHHHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCcCCC
Confidence 9999999999999999997 8876 89 999999999999999999998753
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=2.3e-50 Score=426.44 Aligned_cols=279 Identities=20% Similarity=0.238 Sum_probs=227.2
Q ss_pred hHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeE
Q 005778 35 NRELEKFLVE--AGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDA 112 (677)
Q Consensus 35 t~~L~~~L~~--~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~ 112 (677)
+.+|.+++.+ ..+.||++|.++|++++++|+++++++. ++++|++||||++|+++|+||||+
T Consensus 13 ~~el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~----------------p~~~v~~fGS~~~g~~~~~SDiDl 76 (349)
T 4fh3_A 13 HKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRIS----------------PDAELVAFGSLESGLALKNSDMDL 76 (349)
T ss_dssp CHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCEEEEESHHHHTCCBSSCCEEE
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEEeeccCCCCCCCCCEEE
Confidence 3455555443 2467999999999999999999998642 368999999999999999999999
Q ss_pred EeecCCccCccchHHHHHHHHHHhccCCceEEEeccCccceEEEEe-------cCceeeEeeeecccccccccccccccc
Q 005778 113 LCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF-------DGLSIDLLYASISRLVVREDLDISDMS 185 (677)
Q Consensus 113 l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~I~~ArVPIIKf~~-------~GI~iDLsfa~l~~~~~p~~l~i~~~~ 185 (677)
+|+.|.....+ .++..+...+.. ...+++.|.+|+||||||.+ .|+.||++|++
T Consensus 77 ~v~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~---------------- 137 (349)
T 4fh3_A 77 CVLMDSRVQSD-TIALQFYEELIA--EGFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNN---------------- 137 (349)
T ss_dssp EEECCTTSCHH-HHHHHHHHHHHH--TTEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESC----------------
T ss_pred EEecCCCCChH-HHHHHHHHHHHh--hcccceEeeeeeeeeEEEEecccccccccceeecCcCc----------------
Confidence 99999887764 666666555553 34678889999999999997 37899999876
Q ss_pred ccCCCCcccccccchhhHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHhhC------CC
Q 005778 186 VLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLY------PN 259 (677)
Q Consensus 186 ~L~~lDe~s~rSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQl~------Pn 259 (677)
.+|++++++|..+++.+++||+|+++||+|||+||||+++.|+||||+|+|||++|||.. |+
T Consensus 138 ------------~~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~ 205 (349)
T 4fh3_A 138 ------------RLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPN 205 (349)
T ss_dssp ------------HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCC
T ss_pred ------------chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCch
Confidence 579999999999999999999999999999999999999999999999999999999952 32
Q ss_pred --------------------------------CCHHHHHHHHHHHhh-cCCCCCceeecccccccCC--cccc-------
Q 005778 260 --------------------------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAIDEAELG--FSVW------- 297 (677)
Q Consensus 260 --------------------------------~s~~~LL~~FF~~Ys-~wdW~~pV~l~~i~~g~lg--~~~W------- 297 (677)
.++++||.+||+||+ +|||+++|+.....++.+. .+.|
T Consensus 206 l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~ 285 (349)
T 4fh3_A 206 LLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHT 285 (349)
T ss_dssp SSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC------
T ss_pred hhhccccccccccCcccccccchhhcccccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhccccccccc
Confidence 368999999999999 6999999886543322211 1234
Q ss_pred cCCCCCCCCCCceEEeCCCCCCCCccCccCHhhHHHHHHHHHHHHHHHHHhhhcCCcccccccc
Q 005778 298 DPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEP 361 (677)
Q Consensus 298 ~p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~~i~~~~~~W~~Lf~p 361 (677)
++..+.....+.|+|+||++|++|+|++|+..+++.|++||+||+++|++.. ...+|+.||+.
T Consensus 286 ~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~-~~~~~~~lfe~ 348 (349)
T 4fh3_A 286 GSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS-YPIPYDSLFEE 348 (349)
T ss_dssp ---------CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS-SSCCGGGGGSC
T ss_pred CcccccCCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc-cCCCHHHHhhc
Confidence 3333444456889999999999999999999999999999999999998743 34689999985
No 4
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=7.7e-51 Score=433.51 Aligned_cols=284 Identities=17% Similarity=0.194 Sum_probs=226.5
Q ss_pred CCCCCCCCCcCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEE
Q 005778 14 KQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALI 93 (677)
Q Consensus 14 ~~~Gvt~Pis~~~Pt~~d~~~t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I 93 (677)
..-|++++++.++|+++++ +.+|++++++ .+++.+|.++|++++++|++++++. .++++|
T Consensus 10 ~~~~~~~~~~~~~P~~~~l--~~~l~~~~~~--~~~~~~e~~~r~~~~~~l~~~i~~~----------------~p~~~v 69 (353)
T 2ikf_A 10 HSSGLVPRGSHMPPSPAVV--GRSLVNSFKQ--FVSKDLHTRHVDATYRLVLDCVAAV----------------DPLMRL 69 (353)
T ss_dssp -------------CCHHHH--HHHHHHHTTT--TCC-----CCHHHHHHHHHHHHHHH----------------CTTCEE
T ss_pred ccccceecccCCCCCHHHH--HHHHHHHHHH--hcCChhhHHHHHHHHHHHHHHHHHH----------------CCCcEE
Confidence 3469999999999999997 7899999876 5578899999999999999999863 146999
Q ss_pred EEecccc-ccCcCCCCCeeEEeecCCccCc--------------cchHHHHHHHHHHhccCCceEEEeccCccceEEEEe
Q 005778 94 FTFGSYR-LGVHGPGADIDALCVGPSYVSR--------------EEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF 158 (677)
Q Consensus 94 ~~FGSy~-lGv~~p~SDID~l~v~P~~v~r--------------e~~Ff~~l~~~L~~~~~v~~l~~I~~ArVPIIKf~~ 158 (677)
++||||+ +|+++|+||||++|+.|..+.. ..+++..+.+.|++...+.+++.|.+|+||||||++
T Consensus 70 ~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIiK~~~ 149 (353)
T 2ikf_A 70 YTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKG 149 (353)
T ss_dssp EEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSSSSCEEEEEC
T ss_pred EEecCccccCCCCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCCCCceEEecccceeEEEEEc
Confidence 9999998 9999999999999998753210 025788889999987778899999999999999999
Q ss_pred -cCceeeEeeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCC
Q 005778 159 -DGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNV 237 (677)
Q Consensus 159 -~GI~iDLsfa~l~~~~~p~~l~i~~~~~L~~lDe~s~rSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~ 237 (677)
.||+|||+|++ .+|+++++.|..++..+++||+++++||+|||+||||+++
T Consensus 150 ~~~i~~Dis~~n----------------------------~~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~ 201 (353)
T 2ikf_A 150 GGAVDFDITAYR----------------------------RNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASV 201 (353)
T ss_dssp SSSCEEEEEESC----------------------------CHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCBTTS
T ss_pred CCCcEEEEEecC----------------------------ccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCC
Confidence 69999999986 4789999999999999999999999999999999999999
Q ss_pred C-CCccHHHHHHHHHHHHhhC------C------------------------CCCHHHHHHHHHHHhh-cCCCCCceeec
Q 005778 238 T-GFLGGVNWALLVARVCQLY------P------------------------NAVPSMLVSRFFRVYT-MWRWPNPVMLC 285 (677)
Q Consensus 238 ~-G~LGG~swaLLVa~vcQl~------P------------------------n~s~~~LL~~FF~~Ys-~wdW~~pV~l~ 285 (677)
. |+||||+|+|||++|||.. | +.++++||.+||+||+ +|||.++|+..
T Consensus 202 ~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi 281 (353)
T 2ikf_A 202 IGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISL 281 (353)
T ss_dssp TTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECS
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcCceEEEc
Confidence 9 9999999999999999852 3 2357999999999999 79999998753
Q ss_pred ccccccC--CcccccCC------CCCCCCCCceEEeCCCCCCCCccCccCHhhHHHHHHHHHHHHHHHH
Q 005778 286 AIDEAEL--GFSVWDPR------KNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICE 346 (677)
Q Consensus 286 ~i~~g~l--g~~~W~p~------~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~ 346 (677)
.. .+.+ ..+.|++. .++.++.+.|+|+||++|.+|+|++|+.++++.|++||++|++++.
T Consensus 282 ~~-~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~~ 349 (353)
T 2ikf_A 282 NR-PGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTAL 349 (353)
T ss_dssp SS-SSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTTT
T ss_pred CC-CcceechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 21 1211 12468642 2223456789999999999999999999999999999999998763
No 5
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=1.1e-48 Score=424.76 Aligned_cols=305 Identities=18% Similarity=0.204 Sum_probs=243.8
Q ss_pred CCCCCCCCCcCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEE
Q 005778 14 KQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALI 93 (677)
Q Consensus 14 ~~~Gvt~Pis~~~Pt~~d~~~t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I 93 (677)
+-.|..++-|-+...+..-+++.+|.++++. +.||+||.++|++++.+|+++++++. ++++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~--i~Pt~eE~~~R~~v~~~l~~~i~~~~----------------p~~~v 85 (405)
T 4e8f_A 24 KNLHISKSCSYQKVPNSHKEFTKFCYEVYNE--IKISDKEFKEKRAALDTLRLCLKRIS----------------PDAEL 85 (405)
T ss_dssp --------------CCSCHHHHHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEE
T ss_pred hcccccccCccccCchHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEE
Confidence 3456666666666666666888999999986 68999999999999999999999753 36899
Q ss_pred EEeccccccCcCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCceEEEeccCccceEEEEe---c----CceeeEe
Q 005778 94 FTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF---D----GLSIDLL 166 (677)
Q Consensus 94 ~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~I~~ArVPIIKf~~---~----GI~iDLs 166 (677)
++|||+++|+++|+||||++|+.|.....+ +++..+.+.|++. ..++..|.+|+||||||.+ . ||+|||+
T Consensus 86 ~~fGS~~~G~~~~~SDiDl~v~~~~~~~~~-~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs 162 (405)
T 4e8f_A 86 VAFGSLESGLALKNSDMDLCVLMDSRVQSD-TIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIG 162 (405)
T ss_dssp EEESHHHHTCCBSSCCEEEEEECCC---CT-THHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEE
T ss_pred EEEeeccCCCCCCCCCEEEEEEecCCCCHH-HHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEe
Confidence 999999999999999999999998865543 6888999999875 6789999999999999995 4 9999999
Q ss_pred eeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCCCCCccHHHH
Q 005778 167 YASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNW 246 (677)
Q Consensus 167 fa~l~~~~~p~~l~i~~~~~L~~lDe~s~rSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~sw 246 (677)
|++ .+|++.+.+|..++..+++||+|+++||+|||+||||+++.|+||||+|
T Consensus 163 ~~n----------------------------~~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l 214 (405)
T 4e8f_A 163 FNN----------------------------RLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGY 214 (405)
T ss_dssp ESC----------------------------HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHH
T ss_pred ecc----------------------------cchHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHH
Confidence 987 3578888888888888899999999999999999999999999999999
Q ss_pred HHHHHHHH-hh-----CCC--------------------------------CCHHHHHHHHHHHhh-cCCCCCceeeccc
Q 005778 247 ALLVARVC-QL-----YPN--------------------------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAI 287 (677)
Q Consensus 247 aLLVa~vc-Ql-----~Pn--------------------------------~s~~~LL~~FF~~Ys-~wdW~~pV~l~~i 287 (677)
+|||++|| |. +|+ .++++||.+||+||+ +|||.+.|+..+.
T Consensus 215 ~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~ 294 (405)
T 4e8f_A 215 VLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRR 294 (405)
T ss_dssp HHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSS
T ss_pred HHHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEEEec
Confidence 99999999 73 232 469999999999999 8999999875442
Q ss_pred ccccCC--cccccCCCC-------CCCCCCceEEeCCCCCCCCccCccCHhhHHHHHHHHHHHHHHHHHhhhcCCccccc
Q 005778 288 DEAELG--FSVWDPRKN-------RRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSAL 358 (677)
Q Consensus 288 ~~g~lg--~~~W~p~~~-------~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~~i~~~~~~W~~L 358 (677)
.++.+. .+.|....+ ...+.+.|+|+||++|.+|+|++|+..+++.|++||+||++++.+... +.+|+.|
T Consensus 295 ~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~-~~~w~~L 373 (405)
T 4e8f_A 295 PDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSY-PIPYDSL 373 (405)
T ss_dssp TTCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSS-SCCGGGG
T ss_pred CCcccccccccccccccccccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhcc-CCCHHHH
Confidence 222222 256875421 123568999999999999999999999999999999999999988542 5789999
Q ss_pred ccccchhhhc
Q 005778 359 FEPYLFFESY 368 (677)
Q Consensus 359 f~p~~Ff~~Y 368 (677)
|+++++..+.
T Consensus 374 f~~~~~~~~~ 383 (405)
T 4e8f_A 374 FEEAPIPPRR 383 (405)
T ss_dssp GSCCCCC---
T ss_pred hCcCCCcccc
Confidence 9999998653
No 6
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-48 Score=409.06 Aligned_cols=268 Identities=22% Similarity=0.288 Sum_probs=229.2
Q ss_pred HHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCee
Q 005778 32 MQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADID 111 (677)
Q Consensus 32 ~~~t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID 111 (677)
-.+++||.+++.. +.||+||.++|++++++|+++++++. ++++|++|||+++|+++|+||||
T Consensus 19 ~~L~~Ei~~f~~~--i~Pt~eE~~~R~~~~~~l~~~~~~~~----------------p~~~v~~fGS~~~g~~~~~SDiD 80 (323)
T 3nyb_A 19 DWLTFEIKDFVAY--ISPSREEIEIRNQTISTIREAVKQLW----------------PDADLHVFGSYSTDLYLPGSDID 80 (323)
T ss_dssp HHHHHHHHHHHHH--TSCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCCEEEESTTTTTCCCTTSCEE
T ss_pred HHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEeCccccCCCCCCCCce
Confidence 3467777777764 78999999999999999999998653 25789999999999999999999
Q ss_pred EEeecCCccCccchHHHHHHHHHHhccCCceEEEeccCccceEEEEe--cCceeeEeeeeccccccccccccccccccCC
Q 005778 112 ALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF--DGLSIDLLYASISRLVVREDLDISDMSVLND 189 (677)
Q Consensus 112 ~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~I~~ArVPIIKf~~--~GI~iDLsfa~l~~~~~p~~l~i~~~~~L~~ 189 (677)
++|+.|.......+++..+.+.|++.+.+++++.|.+|+||||||++ .||+|||+|++
T Consensus 81 l~v~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~-------------------- 140 (323)
T 3nyb_A 81 CVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFER-------------------- 140 (323)
T ss_dssp EEECSSCCGGGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSC--------------------
T ss_pred EEEecCCCChhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecC--------------------
Confidence 99999876432236888999999998888999999999999999996 79999999986
Q ss_pred CCcccccccchhhHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHhhCCC---------C
Q 005778 190 VDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPN---------A 260 (677)
Q Consensus 190 lDe~s~rSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQl~Pn---------~ 260 (677)
.+|++++++|.++++.+++||+++++||+|||+||||+++.|+||||+|+|||+++||++|+ .
T Consensus 141 --------~~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~ 212 (323)
T 3nyb_A 141 --------TNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKD 212 (323)
T ss_dssp --------SSTTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGG
T ss_pred --------cHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccc
Confidence 47899999999999999999999999999999999999999999999999999999999984 3
Q ss_pred CHHHHHHHHHHHhh-cCCCCCceeeccccc-ccCCcccccCCCCCCCCCCceEEeCCCCCCCCccCccCHhhHHHHHHHH
Q 005778 261 VPSMLVSRFFRVYT-MWRWPNPVMLCAIDE-AELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQF 338 (677)
Q Consensus 261 s~~~LL~~FF~~Ys-~wdW~~pV~l~~i~~-g~lg~~~W~p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~EF 338 (677)
++++||.+||+||+ +|||++.++...... .....+.|... .+..+.+.|+|+||++|++|+++++ ..++.|++||
T Consensus 213 ~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~F 289 (323)
T 3nyb_A 213 NLGVLLIEFFELYGKNFGYDDVALGSSDGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKAF 289 (323)
T ss_dssp CHHHHHHHHHHHHHHTCCTTTEEEEESSSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCCcEEEEecCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccch--HHHHHHHHHH
Confidence 68999999999999 999999876432111 11223567542 2223457899999999999999985 3589999999
Q ss_pred HHHHHHHHHh
Q 005778 339 QYGNTICEEV 348 (677)
Q Consensus 339 ~Ra~~Il~~i 348 (677)
++|++++.+-
T Consensus 290 ~~A~~~L~~~ 299 (323)
T 3nyb_A 290 AGAFDLLTNR 299 (323)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=9.4e-40 Score=360.07 Aligned_cols=304 Identities=14% Similarity=0.187 Sum_probs=215.7
Q ss_pred CCCHHHHHh-hHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccc-cccC
Q 005778 26 GPTEADMQR-NRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSY-RLGV 103 (677)
Q Consensus 26 ~Pt~~d~~~-t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy-~lGv 103 (677)
.|.+..++. ...+.+...+.. +++++.+.|++++++|+.++++|. .+++|++|||| .+|+
T Consensus 11 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~a~~~l~~~v~~~~----------------p~a~v~~FGS~v~~Gl 72 (468)
T 2b4v_A 11 NPSPDHYAVWGKAIMAENNRRV--GPEHMFRTAIRAQQQLQGLADKWT----------------PDAKVYCCGSMVTYGQ 72 (468)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHB--CCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEEEEETHHHHHSS
T ss_pred CCChHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHC----------------CCcEEEEeeCchhcCC
Confidence 455555543 334444444433 788999999999999999999874 37999999999 7999
Q ss_pred cCCCCCeeEEeecCCccCcc-chHH--HHHHHHHHhc-cC--CceEEEeccCccceEEEEec------------------
Q 005778 104 HGPGADIDALCVGPSYVSRE-EDFF--FILHNILAEM-EE--VTELQPVLDAHVPVMKFKFD------------------ 159 (677)
Q Consensus 104 ~~p~SDID~l~v~P~~v~re-~~Ff--~~l~~~L~~~-~~--v~~l~~I~~ArVPIIKf~~~------------------ 159 (677)
++|+||||++|+.+.....+ .... .++.+.|++. ++ +.++++|++||||||||++.
T Consensus 73 ~lp~SDiDl~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~ 152 (468)
T 2b4v_A 73 MERGSDLDLACMFDDPYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEED 152 (468)
T ss_dssp CBTTCCEEEEEECSSSSCCHHHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHH
T ss_pred CCCCCceeEEEecCCCCccchhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEeccccccccccccccccccc
Confidence 99999999999987322111 1111 2477888875 44 57899999999999999832
Q ss_pred ----------------------------------------C--ceeeEeeeecccc-----ccccc--cc--cccccccC
Q 005778 160 ----------------------------------------G--LSIDLLYASISRL-----VVRED--LD--ISDMSVLN 188 (677)
Q Consensus 160 ----------------------------------------G--I~iDLsfa~l~~~-----~~p~~--l~--i~~~~~L~ 188 (677)
| ..+|++|.+.... ..|+. +. +.++-...
T Consensus 153 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 232 (468)
T 2b4v_A 153 RKARTALLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRD 232 (468)
T ss_dssp HHHTEEEEEEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEE
T ss_pred cccccccccccccccccccccchhhhcccccccccccccccccccceeecccccchhhhhcccccccccccccccccccc
Confidence 2 2245666652110 01110 00 00000001
Q ss_pred CCC------------cccccccchhhHHHHHHHhCCChhh-HHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHh
Q 005778 189 DVD------------EPTVRSLNGCRVADQILKLVPNVEH-FCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQ 255 (677)
Q Consensus 189 ~lD------------e~s~rSLNG~Rvtd~Il~lVp~~~~-FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQ 255 (677)
.+| +-|.. .+|++++.+|..++-.+++ ||+|+++||+|||+||||+++.|+||||+|+|||++|+|
T Consensus 233 ~ld~rf~~~~~gi~~DISfn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ 311 (468)
T 2b4v_A 233 VLDVRFVPEMFMYRWDISFV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLL 311 (468)
T ss_dssp ESCTTSCCGGGSSCEEEESC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHH
T ss_pred cccccccccccceEEEEecc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHH
Confidence 111 23555 7999999999999888889 999999999999999999999999999999999999998
Q ss_pred hC-----------------CC------------CCHHHHHHHHHHHhh-cCCCCCceeecccccccC--CcccccCCCCC
Q 005778 256 LY-----------------PN------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAIDEAEL--GFSVWDPRKNR 303 (677)
Q Consensus 256 l~-----------------Pn------------~s~~~LL~~FF~~Ys-~wdW~~pV~l~~i~~g~l--g~~~W~p~~~~ 303 (677)
.. |+ .++++||.+||+||+ +|||.+.++.... .+.+ ..+.|+...+.
T Consensus 312 ~~~~lP~v~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~-g~~~~K~~~~w~~~~n~ 390 (468)
T 2b4v_A 312 VTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNR-NRRSYRSDIGWNFPQNK 390 (468)
T ss_dssp HTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSS-SSCEEHHHHTCCCGGGE
T ss_pred hcCcCCCCCcccccchhhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEEecC-Ccceecccccccccccc
Confidence 64 11 148999999999999 8999998764321 1111 12457642221
Q ss_pred -CCCCCceEEeCCCCC----CCCccCccCHhhHHHHHHHHHHHHHHHHHhh
Q 005778 304 -RDKTHHMPIITPAYP----CMNSSYNVSTSTLRVMMDQFQYGNTICEEVE 349 (677)
Q Consensus 304 -~dr~~~MpIiTP~~P----~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~~i~ 349 (677)
....+.|+|+||++| .+|+|++|+..+++.|++||++|+++|++..
T Consensus 391 ~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 391 KGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp ETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 112357999999999 9999999999999999999999999998754
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=2.9e-37 Score=331.76 Aligned_cols=280 Identities=15% Similarity=0.200 Sum_probs=215.5
Q ss_pred HHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCee
Q 005778 32 MQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADID 111 (677)
Q Consensus 32 ~~~t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID 111 (677)
-++++|+.++.+. +.||++|.+.|++++.+|++++++.. ++++|++|||+.+|+++|+||||
T Consensus 5 ~~lt~EI~dFy~~--i~PT~eE~~~R~~vv~~l~~ii~~~~----------------p~~~v~~FGS~~tgl~lp~SDiD 66 (384)
T 3hj4_A 5 REFIRGMMAHYRA--SLPPPEHSVVIHELQKRVLDIGMLAV----------------NKAHVELFGSHVSGFCTPHSDAD 66 (384)
T ss_dssp HHHHHHHHHHHHH--HSCCTTHHHHHHHHHHHHHHHHHHHS----------------TTCEEEEESHHHHSCCCTTCCEE
T ss_pred hHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCcEEEEeeeccCCCCCCCCCee
Confidence 4678888888874 78999999999999999999998531 36999999999999999999999
Q ss_pred EEeecCCccC----ccc-h--HHHHHHHHHHh---ccCCceEEEeccCccceEEEEe--cCceeeEeeeecccccccccc
Q 005778 112 ALCVGPSYVS----REE-D--FFFILHNILAE---MEEVTELQPVLDAHVPVMKFKF--DGLSIDLLYASISRLVVREDL 179 (677)
Q Consensus 112 ~l~v~P~~v~----re~-~--Ff~~l~~~L~~---~~~v~~l~~I~~ArVPIIKf~~--~GI~iDLsfa~l~~~~~p~~l 179 (677)
+++..+.... .+. + ....+.+ |++ ..+++.+. |.+||||||||.+ .|++|||+|++
T Consensus 67 lvI~~~~~~~~~~~~~~~~~~~~lrll~-L~k~~~~~~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn---------- 134 (384)
T 3hj4_A 67 ISLTYRNFSPWLQGMERVDEQNNKRMTR-FGKEASAMGMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGN---------- 134 (384)
T ss_dssp EEEECTTCCGGGTTCHHHHHHHHHHHHH-HHHHHHHHTCEEEE-EECSSSCEEEEECTTTCCEEEEEECC----------
T ss_pred EEEecCCCcccccccchhhHHHHHHHHH-HHhhcccCCeeEEe-ecCcccCEEEEEEcCCCeEEEEEecc----------
Confidence 9998865321 000 0 1111111 222 23666665 4599999999997 69999999987
Q ss_pred ccccccccCCCCcccccccchhhHHHHHHHhCCC-hhhHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHhhCC
Q 005778 180 DISDMSVLNDVDEPTVRSLNGCRVADQILKLVPN-VEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYP 258 (677)
Q Consensus 180 ~i~~~~~L~~lDe~s~rSLNG~Rvtd~Il~lVp~-~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQl~P 258 (677)
.+|++.+..|..+... .++||+|+++||+||++|||++++.|+||||+|+|||++|||.+|
T Consensus 135 ------------------~~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~ 196 (384)
T 3hj4_A 135 ------------------IGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELG 196 (384)
T ss_dssp ------------------HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHT
T ss_pred ------------------cchHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCC
Confidence 3678888888888777 457999999999999999999999999999999999999999742
Q ss_pred ---CC------------------------------------CHHHH----HHHHHHHhhcCCCCCceee-cccccc-c--
Q 005778 259 ---NA------------------------------------VPSML----VSRFFRVYTMWRWPNPVML-CAIDEA-E-- 291 (677)
Q Consensus 259 ---n~------------------------------------s~~~L----L~~FF~~Ys~wdW~~pV~l-~~i~~g-~-- 291 (677)
+. ++++| |.+||+||+.|||.+-|+. .+.... .
T Consensus 197 vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~ 276 (384)
T 3hj4_A 197 LLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVY 276 (384)
T ss_dssp SSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHH
T ss_pred CCCccccccccCCcccccccHhhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCccccccc
Confidence 11 26777 9999999999999998664 332211 0
Q ss_pred ----------CC---cccccCC------C----------------CCCCCCCceEEeCCCCCCCCccCccCHhhHHHHHH
Q 005778 292 ----------LG---FSVWDPR------K----------------NRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMD 336 (677)
Q Consensus 292 ----------lg---~~~W~p~------~----------------~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~ 336 (677)
+| -+.|... . -++..+.++.|++ +.-.+|+++.|+.+....|+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 355 (384)
T 3hj4_A 277 ERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQ 355 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHH
T ss_pred chhhhhhhhhccchhhhhhhhhhhccccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHHH
Confidence 01 2445410 0 1233467899999 999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCcccccccc
Q 005778 337 QFQYGNTICEEVELNKAQWSALFEP 361 (677)
Q Consensus 337 EF~Ra~~Il~~i~~~~~~W~~Lf~p 361 (677)
||+||++|+.+-+ ++...+++|..
T Consensus 356 ~~~~~~~~~~~~~-~~~~~~~~~~~ 379 (384)
T 3hj4_A 356 EFNRLREMLIDKE-SELKFDEVFRE 379 (384)
T ss_dssp HHHHHHHHHTTTG-GGCCHHHHTCC
T ss_pred HHHHHHHHHhccc-ccccHHHHhhh
Confidence 9999999997633 23456666644
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=332.27 Aligned_cols=249 Identities=16% Similarity=0.254 Sum_probs=193.8
Q ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeEEe
Q 005778 35 NRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALC 114 (677)
Q Consensus 35 t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~ 114 (677)
++++.++++ .+-||++|.+.|..++.+|++++++. + ++++|++|||+.+|+++|+||||+++
T Consensus 135 ~~EI~~f~~--~i~PT~eE~~~R~~vv~~le~ii~~~--------------f--P~a~V~~FGS~~tGL~lp~SDIDlvl 196 (464)
T 3pq1_A 135 DDQLNTLLK--EFQLTEENTKLRYLTCSLIEDMAAAY--------------F--PDCIVRPFGSSVNTFGKLGCDLDMFL 196 (464)
T ss_dssp HHHHHHHHH--HHBCCHHHHHHHHHHHHHHHHHHTTT--------------S--TTCEEEEEGGGTSSCCBTTCCEEEEE
T ss_pred HHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHH--------------C--CCCEEEEeCCCccCCCCCCCCeEEEE
Confidence 455555555 46799999999999999999999852 1 36999999999999999999999988
Q ss_pred ecCCccCc--------------------c----chHHHHHHHHHHhc-cCCceEEEeccCccceEEEEec--CceeeEee
Q 005778 115 VGPSYVSR--------------------E----EDFFFILHNILAEM-EEVTELQPVLDAHVPVMKFKFD--GLSIDLLY 167 (677)
Q Consensus 115 v~P~~v~r--------------------e----~~Ff~~l~~~L~~~-~~v~~l~~I~~ArVPIIKf~~~--GI~iDLsf 167 (677)
..+..... + ..++..+.+.|++. +++.+++.|.+||||||||.+. ||+|||+|
T Consensus 197 ~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~ 276 (464)
T 3pq1_A 197 DLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALTT 276 (464)
T ss_dssp ECC-----CCSCEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEEEC
T ss_pred ecCCcccccccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEEec
Confidence 65532100 0 13455667777763 6788999999999999999994 99999999
Q ss_pred eeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCCCCC-ccHHHH
Q 005778 168 ASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGF-LGGVNW 246 (677)
Q Consensus 168 a~l~~~~~p~~l~i~~~~~L~~lDe~s~rSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~-LGG~sw 246 (677)
++ .+|++.+.+|..+...+++||+|+++||+||++|||++++.|+ ||||+|
T Consensus 277 nn----------------------------~~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL 328 (464)
T 3pq1_A 277 NN----------------------------RIALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSL 328 (464)
T ss_dssp SC----------------------------TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHH
T ss_pred CC----------------------------CcHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHH
Confidence 87 3688999999999888999999999999999999999999997 999999
Q ss_pred HHHHHHHHhhCC-----C------------------------------------CCHHHHHHHHHHHhhcCCCCCceeec
Q 005778 247 ALLVARVCQLYP-----N------------------------------------AVPSMLVSRFFRVYTMWRWPNPVMLC 285 (677)
Q Consensus 247 aLLVa~vcQl~P-----n------------------------------------~s~~~LL~~FF~~Ys~wdW~~pV~l~ 285 (677)
+|||++|+|... + .++++||.+||+||++|||.+.|+.
T Consensus 329 ~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIs- 407 (464)
T 3pq1_A 329 TMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXXX- 407 (464)
T ss_dssp HHHHHHHHHSCC-------CCSHHHHTTC---------------------CCCCCCHHHHHHHHHHHGGGCCCCCCCCC-
T ss_pred HHHHHHHHHccCCCcCCChHHhccccCcccceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCcccccc-
Confidence 999999999751 1 1479999999999999999986652
Q ss_pred ccccccCCcccccCCCCCCCCCCceEEeCCCCCCCCccCccCHhhHHHHHHHHHHHHHHHHHhhh------cCCccc--c
Q 005778 286 AIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVEL------NKAQWS--A 357 (677)
Q Consensus 286 ~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~~i~~------~~~~W~--~ 357 (677)
| ..|++.||+...+..++.|+++|..||+.-.. .+.+|. .
T Consensus 408 --------------------------I------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~~~~~~~~~~~~~wgl~~ 455 (464)
T 3pq1_A 408 --------------------------X------XXXXXXXVSQSQLQKFVDLARESAWILQQEDTDRPSISSNRPWGLVS 455 (464)
T ss_dssp --------------------------C------C-------CHHHHHHHHHHHHHHHHHHHCC-----------CCTTGG
T ss_pred --------------------------c------ccccccccCHHHHHHHHHHHHHHHHHHhhccccCcCCCCCCCcchHH
Confidence 1 67999999999999999999999999985332 234574 5
Q ss_pred ccccc
Q 005778 358 LFEPY 362 (677)
Q Consensus 358 Lf~p~ 362 (677)
|+.|.
T Consensus 456 ll~~~ 460 (464)
T 3pq1_A 456 LLLPS 460 (464)
T ss_dssp GCC--
T ss_pred HhccC
Confidence 66553
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.32 E-value=9.4e-11 Score=128.32 Aligned_cols=333 Identities=18% Similarity=0.181 Sum_probs=200.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCC-CCeeEEee
Q 005778 37 ELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPG-ADIDALCV 115 (677)
Q Consensus 37 ~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~-SDID~l~v 115 (677)
-+.++|.. +-|+++|.++=.++.+.|...+++ + +.+++..|||+-|.++++ ||||+.++
T Consensus 6 ~~~~~l~~--i~P~~~E~~~~~~~~~~I~~~L~~-~-----------------~~~v~~~GS~AkgT~Lrg~sDIDIfv~ 65 (437)
T 1r89_A 6 ILEKALEL--VIPDEEEVRKGREAEEELRRRLDE-L-----------------GVEYVFVGSYARNTWLKGSLEIDVFLL 65 (437)
T ss_dssp HHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHH-H-----------------TCCEEEEHHHHHTCCCTTCCEEEEEEE
T ss_pred HHHHHHHh--hCCCHHHHHHHHHHHHHHHHHHHh-C-----------------CCeEEEeccccCCCcCCCCCCceEEEE
Confidence 35566654 679999998888888888877775 1 258899999999999986 89999999
Q ss_pred cCCccCccchHHHHHHHHHHhccCCceEEEeccCccceEEEEecCceeeEeeeeccccccccccccccccccCCCCcccc
Q 005778 116 GPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTV 195 (677)
Q Consensus 116 ~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~~~~p~~l~i~~~~~L~~lDe~s~ 195 (677)
.|....++ ++=..-..++++.- .+. .+.-|.-|-+...+.|+++|++=|- ++.+..-+
T Consensus 66 f~~~~~~e-~l~~~~l~~~~e~l--~~~-~~~ya~hpyV~~~f~g~~vDVVP~y----------~v~~g~~~-------- 123 (437)
T 1r89_A 66 FPEEFSKE-ELRERGLEIGKAVL--DSY-EIRYAEHPYVHGVVKGVEVDVVPCY----------KLKEPKNI-------- 123 (437)
T ss_dssp ECTTSCHH-HHHHHHHHHHHHHS--SSE-EEEESSSEEEEEEETTEEEEEEEEE----------CCSSSSCC--------
T ss_pred cCCCCCHH-HHHHHHHHHHHHHH--HHh-hhhccCCceEEEEecceEEEEEEEE----------EccCCccc--------
Confidence 98876543 33222222333211 011 2456667888888899999997442 12111100
Q ss_pred cccchh----hHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCC--CCCCccHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 005778 196 RSLNGC----RVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSN--VTGFLGGVNWALLVARVCQLYPNAVPSMLVSRF 269 (677)
Q Consensus 196 rSLNG~----Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn--~~G~LGG~swaLLVa~vcQl~Pn~s~~~LL~~F 269 (677)
..++ .-++++.+...+ ++..+|++|+|.|..|+|++ ..++++||.+=||++++ -+...+|..+
T Consensus 124 --~tavDrtp~H~~fv~~r~~~---~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y------G~f~~vl~~~ 192 (437)
T 1r89_A 124 --KSAVDRTPFHHKWLEGRIKG---KENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY------GSFLETVKNA 192 (437)
T ss_dssp --CSHHHHHHHHHHHHTTTSTT---CHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH------SSHHHHHHHH
T ss_pred --cccccCcHHHHHHHHhhhhh---hhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH------cCHHHHHHHH
Confidence 0121 233444433332 88999999999999999987 46789999999999994 1233333333
Q ss_pred HHHhhcCCCCCceeecccccccCCcccccCCCCCCCCCCceEEeCCCCCCCCccCccCHhhHHHHHHHHHHHHHHHHHhh
Q 005778 270 FRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVE 349 (677)
Q Consensus 270 F~~Ys~wdW~~pV~l~~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~P~~Nsa~nVs~sTlrvI~~EF~Ra~~Il~~i~ 349 (677)
+ +|..++.+.- +. + ... ...++.|+||.+|..|+|.++|..++..+..+-+... ..
T Consensus 193 ----~--~w~~~~~Id~-~~---~-----~~~----~~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l---~~-- 248 (437)
T 1r89_A 193 ----R--RWTRRTVIDV-AK---G-----EVR----KGEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFM---EA-- 248 (437)
T ss_dssp ----T--TCCTTEEEEG-GG---T-----EEE----ECSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHH---HS--
T ss_pred ----H--HhCCCeEEec-CC---C-----ccc----CCCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHH---hC--
Confidence 3 5655666532 10 0 011 1357899999999999999999988887776554322 22
Q ss_pred hcCCccccccccc--------chh---h-hcccEEEEEEEecChhhhhhhhhHHHHHHHHHHHHHhhcccCceeec-cCC
Q 005778 350 LNKAQWSALFEPY--------LFF---E-SYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCH-PYP 416 (677)
Q Consensus 350 ~~~~~W~~Lf~p~--------~Ff---~-~Yk~yl~I~v~a~~~e~~~~w~GwVESrlR~Lv~~LE~~~~~~l~ah-p~P 416 (677)
.+ .++|.|. .+- . +=.+.+.|.....+.-+- ..-|-++--.+.|...||+.....+... .|
T Consensus 249 ---ps-~~~f~~~~~~~~~~~~~~~~~~~r~t~~~~~~f~~p~~~~D-~l~pQl~k~~~~i~~~L~~~gF~v~~~~~~~- 322 (437)
T 1r89_A 249 ---PS-LGFFKPKHPLEIEPERLRKIVEERGTAVFAVKFRKPDIVDD-NLYPQLERASRKIFEFLERENFMPLRSAFKA- 322 (437)
T ss_dssp ---CC-GGGGSCCCCCCCCHHHHHHHHHHHTCEEEEEEEECCSCCHH-HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEE-
T ss_pred ---cc-HHhcCCCCccccCHHHHHHHHHhCCcEEEEEEECCCCCCcc-cchHHHHHHHHHHHHHHHHCCCEEEEecccc-
Confidence 11 2233221 111 1 122456666645543222 3346777777788888888765545433 33
Q ss_pred CCCCCCCCCCceeEEEEeeeeCCCC--ccCCCceecchHHHHHHHH
Q 005778 417 HEYVDTSKPCAHCAFFMGLQRKPGE--VVQEGQQFDIRGSVEEFKL 460 (677)
Q Consensus 417 ~~f~~~~~~~~~~~ffIGL~~~~~~--~~~~~~~~dl~~~v~eF~~ 460 (677)
.+. .|..++=|....-. ....|.++..+.-.+.|.+
T Consensus 323 ---~~~-----~~~l~~e~~~~~lp~~~~~~GPpv~~~~~~~~F~~ 360 (437)
T 1r89_A 323 ---SEE-----FCYLLFECQIKEISRVFRRMGPQFEDERNVKKFLS 360 (437)
T ss_dssp ---CSS-----EEEEEEEESCSCCCSEEEEEEEETTCHHHHHHHHH
T ss_pred ---cCC-----eeEEEEEEcccccCCeeEeeCCCccchhhHHHHHH
Confidence 221 34334444322110 0112334544556778877
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.09 E-value=1.2e-08 Score=108.18 Aligned_cols=271 Identities=14% Similarity=0.142 Sum_probs=143.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCC-eEEEEeccccccCcCCC-CCeeEE
Q 005778 36 RELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDAN-ALIFTFGSYRLGVHGPG-ADIDAL 113 (677)
Q Consensus 36 ~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~-~~I~~FGSy~lGv~~p~-SDID~l 113 (677)
.+|.+|+.+ .+-|+.++...=..+++.|...+++-. .+.+ . .... .+++.+|||+-|.++++ ||||++
T Consensus 9 ~~l~~fi~~-~l~p~~~~~~~i~~~~~~I~~~L~~~~----~~~~---~--~~~~v~~v~~~GSyargT~lrg~sDiDlv 78 (349)
T 1px5_A 9 RDLDKFIED-HLLPNTXFRTQVKEAIDIVXRFLKERC----FQGT---A--DPVRVSKVVKGGSSGKGTTLRGRSDADLV 78 (349)
T ss_dssp GGHHHHHHH-HTSCCHHHHHHHHHHHHHHHHHHHHHT----TCC--------CCEEEEEEEEEEC--------CEEEEEE
T ss_pred HHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhhh----cccc---c--CCcceEEEEEecCcCCCcccCCCCceeEE
Confidence 357788863 578999888776677777777776421 1100 0 0011 37889999999999985 899999
Q ss_pred eecCCccCcc------chHHHHHHHHHHhc---cCCc-eEEEe-ccCccc-eEEEEe------cCceeeEeeeecccccc
Q 005778 114 CVGPSYVSRE------EDFFFILHNILAEM---EEVT-ELQPV-LDAHVP-VMKFKF------DGLSIDLLYASISRLVV 175 (677)
Q Consensus 114 ~v~P~~v~re------~~Ff~~l~~~L~~~---~~v~-~l~~I-~~ArVP-IIKf~~------~GI~iDLsfa~l~~~~~ 175 (677)
++.+...+.+ ..+...+.+.|.+. ..+. ..... ..-..| .+.|.+ .|++|||+-|--....+
T Consensus 79 V~l~~~~~~~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~ 158 (349)
T 1px5_A 79 VFLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQW 158 (349)
T ss_dssp EEEESCSCTTHHHHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSC
T ss_pred EEECCCCchhhHHhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhccc
Confidence 9988653332 13444445555531 2222 22211 111245 366665 47999988654211100
Q ss_pred -----ccccccccccccCC----CCcccccccchhhHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCCCCCccHHHH
Q 005778 176 -----REDLDISDMSVLND----VDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNW 246 (677)
Q Consensus 176 -----p~~l~i~~~~~L~~----lDe~s~rSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~sw 246 (677)
|+ -++..+ ++.. -+......-.-..-.+++.. ....|+.++|+||+|-++.+. ....+.+.||.+
T Consensus 159 ~~~~~~~-~~~y~~-li~~~~~~~~~g~~~~~~~~~h~~~v~~---~~~~~k~lIRLlK~W~~~~~~-~~~~~~~ssy~l 232 (349)
T 1px5_A 159 TPGYKPN-PEIYVQ-LIKECKSRGKEGEFSTCFTELQRDFLRN---RPTKLKSLIRLVKHWYQTCKK-THGNKLPPQYAL 232 (349)
T ss_dssp CTTSCCC-HHHHHH-HHHHHHHHTCTTTTGGGGHHHHHHHHHS---SCHHHHHHHHHHHHHHHHHHT-TCSSCCCCHHHH
T ss_pred ccccCCC-hHHHHH-HHhhccccccCccchhcCHHHHHHHHHh---CcHHHHHHHHHHHHHHHHhhh-cccCCCCChHHH
Confidence 00 000000 0000 00000000001111233332 246899999999999998764 223467899999
Q ss_pred HHHHHHHHhhCCCC---CHHHHHHHHHHHhhcCCCCCceeecccccccCCcccccCCCCCCC-----------CCCceEE
Q 005778 247 ALLVARVCQLYPNA---VPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRD-----------KTHHMPI 312 (677)
Q Consensus 247 aLLVa~vcQl~Pn~---s~~~LL~~FF~~Ys~wdW~~pV~l~~i~~g~lg~~~W~p~~~~~d-----------r~~~MpI 312 (677)
-+|+++.....+.. +..+-+..+|++-++|.- ..|. |..-.+..+ +...-.|
T Consensus 233 ELL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~~-~~i~-------------w~~~y~~~~~~~~~fl~~~l~~~~p~I 298 (349)
T 1px5_A 233 ELLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQK-LCIF-------------WEAYYDFTNPVVGRCMLQQLKKPRPVI 298 (349)
T ss_dssp HHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGGG-CEEC-------------CCSSCCSSSHHHHHHHHHHHTSSSCEE
T ss_pred HHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCc-ccee-------------eeccccccchhHHhhhhhhhcCCCCee
Confidence 99999988766543 567778889988887631 1121 211000000 0112369
Q ss_pred eCCCCCCCCccCccCHhhHHHHHHH
Q 005778 313 ITPAYPCMNSSYNVSTSTLRVMMDQ 337 (677)
Q Consensus 313 iTP~~P~~Nsa~nVs~sTlrvI~~E 337 (677)
+||+.|..|++.. +......+..|
T Consensus 299 ~DP~dp~~NVa~~-~~~~~~~~~~~ 322 (349)
T 1px5_A 299 LDPADPTGNVGGG-DTHSWQRLAQE 322 (349)
T ss_dssp BCTTCTTCBTTCS-CHHHHHHHHHH
T ss_pred eCCCCCCCcccCC-chhhHHHHHHH
Confidence 9999999998877 76666666533
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=98.02 E-value=0.001 Score=71.12 Aligned_cols=267 Identities=15% Similarity=0.072 Sum_probs=160.1
Q ss_pred CCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcC
Q 005778 26 GPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHG 105 (677)
Q Consensus 26 ~Pt~~d~~~t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~ 105 (677)
.|.+.|-..++.|++-= ..+.||++|..+=..++.+++.++...+. ..|.-+ -.=..|...|||.-|+++
T Consensus 19 k~~~~d~~~~~~llkr~--~~l~Ps~eEq~~v~~lv~kI~~~ld~liv----~pg~~e----~~L~~V~rVGs~aKgtll 88 (364)
T 4at7_A 19 KPAPDETSFSEALLKRN--QDLAPNSAEQASILSLVTKINNVIDNLIV----APGTFE----VQIEEVRQVGSYKKGTMT 88 (364)
T ss_dssp SCCCCCHHHHHHHHHHH--HHHSCCHHHHHHHHHHHHHHHHHHHHHHH----CCTTCS----SCEEEEEEEHHHHHTCCC
T ss_pred CCCCChHHHHHHHHhcC--CccCCCHHHHHHHHHHHHHHHHHHHhhhc----CCCccc----cccceeEEeccccCCcee
Confidence 35566666666666533 35899999999888888999888887652 233211 012578999999999999
Q ss_pred CCC-CeeEEeecCCccCcc--chHHHHHHHHHHhccCCceEE-EeccCccceEEEEecCceeeEeeeecccccccccccc
Q 005778 106 PGA-DIDALCVGPSYVSRE--EDFFFILHNILAEMEEVTELQ-PVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDI 181 (677)
Q Consensus 106 p~S-DID~l~v~P~~v~re--~~Ff~~l~~~L~~~~~v~~l~-~I~~ArVPIIKf~~~GI~iDLsfa~l~~~~~p~~l~i 181 (677)
.|. |+|++|++....+.+ +....++.+-|+....-..+. .+.+|.+=| .-.+-.+=+.+.. .|.++.-
T Consensus 89 ~G~~~~dlVvl~k~lPT~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~~I---~~~~~~v~i~It~-----tsp~lrk 160 (364)
T 4at7_A 89 TGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEI---SSSDATVKILITT-----VPPNLRK 160 (364)
T ss_dssp TTCCEEEEEEEESSCCBHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEEEE---ECSSCEEEEEEEE-----CHHHHHT
T ss_pred cCCCceeEEEEecCCCCHHHHHHHHHHHHHHhhhhccccceeeccCcceEEE---ecCCCcEEEEEEe-----CChhhcc
Confidence 876 899999998777753 113344555555432111111 111111111 0011111111111 1112111
Q ss_pred ccccccCCCC-cccccccchhhHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHhhCC--
Q 005778 182 SDMSVLNDVD-EPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYP-- 258 (677)
Q Consensus 182 ~~~~~L~~lD-e~s~rSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQl~P-- 258 (677)
.+ +-..|| ..|..+|-.+|-+.++.....+ ...+.++|++|...++.. .++.|.+|++-+|+.+..-.-|
T Consensus 161 ~d--p~~~Ld~~~cl~aLaalRhAkWfq~na~~-s~v~~lIRIlkDlc~R~~----~w~pL~~waLELL~~~Ai~s~~~~ 233 (364)
T 4at7_A 161 LD--PELHLDIKVLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRFP----GFEPLTPWILDLLGHYAVMNNPTR 233 (364)
T ss_dssp CC--TTTBCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCG----GGTTCCHHHHHHHHHHHHHSSTTS
T ss_pred CC--hhHhcCHHHHHHHHHHhhhhHHHHhhccc-cccceeehhhHHHHHhcC----CcCCCCHHHHHHHHHHHHhcCCCC
Confidence 11 111233 3477788889999888877765 667889999999665542 2367888777777777666544
Q ss_pred -CCCHHHHHHHHHHHhhc-CCCCCceeecccccccCCcccccCCCCCCCCCCceEEeCCCCC-CCCccCccCHhhHHHHH
Q 005778 259 -NAVPSMLVSRFFRVYTM-WRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYP-CMNSSYNVSTSTLRVMM 335 (677)
Q Consensus 259 -n~s~~~LL~~FF~~Ys~-wdW~~pV~l~~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~P-~~Nsa~nVs~sTlrvI~ 335 (677)
..+++.-+.++|+..+. +-.|.-. -|.||+.+ ..++..+.+......|.
T Consensus 234 ~~l~~~~afRRVLElLAsGillp~~~----------------------------Gi~DPCE~~~~~v~~~lt~qq~e~it 285 (364)
T 4at7_A 234 QPLALNVAYRRCLQILAAGLFLPGSV----------------------------GITDPCESGNFRVHTVMTLEQQDMVC 285 (364)
T ss_dssp SCCCHHHHHHHHHHHHHTTTTSTTBC----------------------------CCBCTTSSSCCBGGGGSCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCcccCCCC----------------------------CCcCCCCCCCcchhccCCHHHHHHHH
Confidence 46899999999999874 3333211 13456655 35555566666666666
Q ss_pred HHHHHHHHHH
Q 005778 336 DQFQYGNTIC 345 (677)
Q Consensus 336 ~EF~Ra~~Il 345 (677)
.--|.+.+++
T Consensus 286 ~sAQ~~LRll 295 (364)
T 4at7_A 286 YTAQTLVRIL 295 (364)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6556555555
No 13
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=97.28 E-value=0.017 Score=62.25 Aligned_cols=262 Identities=18% Similarity=0.187 Sum_probs=154.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCC---Cc-------c---------c---cccCCeEEEEeccc
Q 005778 45 AGLYESKEEDEKREQVLGRIRQIAK---DWVKELTRLRGY---SD-------Q---------M---VEDANALIFTFGSY 99 (677)
Q Consensus 45 ~~l~pS~EE~~~R~~VL~~L~~iv~---~wv~~v~~~~g~---~~-------~---------~---~~~~~~~I~~FGSy 99 (677)
..+||++||.+.=+.++..++..+| +|+.+-.+..+- ++ . . ....=.-|.-.|++
T Consensus 21 ~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~l 100 (383)
T 4at7_B 21 SSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGLV 100 (383)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEecee
Confidence 4689999999999999999988776 565432111110 00 0 0 00011345669999
Q ss_pred cccCcCCC-CCeeEEeecCCccCccchHHHHHHHHHHh-ccCCc-----eEEEeccCccceEEEEecCceeeEeeeeccc
Q 005778 100 RLGVHGPG-ADIDALCVGPSYVSREEDFFFILHNILAE-MEEVT-----ELQPVLDAHVPVMKFKFDGLSIDLLYASISR 172 (677)
Q Consensus 100 ~lGv~~p~-SDID~l~v~P~~v~re~~Ff~~l~~~L~~-~~~v~-----~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~ 172 (677)
.-|+.+.| -+.|+|+++..-.++ .+...+.+.|.+ +..++ -...+.+|.+=|-.-....+.+=|.+.+.
T Consensus 101 aKGlLLkGd~~veLVvlck~kPT~--~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i~i~~~~~p~~~v~I~lTSp-- 176 (383)
T 4at7_B 101 AKGLLLKGDLDLELVLLCKEKPTT--ALLDKVADNLAIQLTTVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSP-- 176 (383)
T ss_dssp HHTCCCTTCCEEEEEEEESSCCBH--HHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEEEEECSSSSCCEEEEEEECH--
T ss_pred cccceECCCCceeEEEEeCCCCcH--HHHHHHHHHHHHHHhhccCCceEEeecCCcceEEEecCCCCCeEEEEEECCc--
Confidence 99999964 599999999888886 466666555542 22221 22233444322211001134455555432
Q ss_pred ccccccc-------ccccccccCCCC-cccccccchhhHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCCCCCccHH
Q 005778 173 LVVREDL-------DISDMSVLNDVD-EPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGV 244 (677)
Q Consensus 173 ~~~p~~l-------~i~~~~~L~~lD-e~s~rSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~ 244 (677)
.+++++ .+...+.-..|| ..|+.+|-.+|-+.++.+..........++|++|...++.- .++-|.+|
T Consensus 177 -~~re~~~~~~~~~~~~~~dp~d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~----~~~pL~~w 251 (383)
T 4at7_B 177 -VVREEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVP----TWGPLRGW 251 (383)
T ss_dssp -HHHHHHHHHHTTCCCCCCCCTTBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCG----GGGGGTTH
T ss_pred -ccccchhhcccccccccCChhhcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcC----CcCCCcHh
Confidence 111111 000001111233 34788888888887776666666677889999999666642 23568878
Q ss_pred HHHHHHHHHHhh-CCCCCHHHHHHHHHHHhhcC-CCCC-ceeecccccccCCcccccCCCCCCCCCCceEEeCCCC--CC
Q 005778 245 NWALLVARVCQL-YPNAVPSMLVSRFFRVYTMW-RWPN-PVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAY--PC 319 (677)
Q Consensus 245 swaLLVa~vcQl-~Pn~s~~~LL~~FF~~Ys~w-dW~~-pV~l~~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~--P~ 319 (677)
++-||+.+..-. ..+.++++-+.+||+..+.. --|. |+ |.||+. |.
T Consensus 252 aLELL~~~ai~s~~~~l~~~~afRRVLEllasG~lLp~~pg-----------------------------I~DPcEk~pt 302 (383)
T 4at7_B 252 PLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSG-----------------------------IYDPCEKEAT 302 (383)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTTTSTTSCC-----------------------------CBCTTCSSCC
T ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCcccCCCCC-----------------------------ccCCCCCCCc
Confidence 877888776643 12357899999999998853 2221 22 456666 65
Q ss_pred CCccCccCHhhHHHHHHHHHHHHHHH
Q 005778 320 MNSSYNVSTSTLRVMMDQFQYGNTIC 345 (677)
Q Consensus 320 ~Nsa~nVs~sTlrvI~~EF~Ra~~Il 345 (677)
.|.+ ..+......|..+-+.+.+++
T Consensus 303 ~~~~-~lt~qq~e~it~sAQ~~LR~~ 327 (383)
T 4at7_B 303 DAIG-HLDRQQREDITQSAQHALRLA 327 (383)
T ss_dssp BTTT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred cccc-cCCHHHHHHHHHHHHHHHHHH
Confidence 5655 566666777777777666655
No 14
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.25 E-value=0.0011 Score=59.48 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=27.1
Q ss_pred eEEEEeccccccCcCCCCCeeEEeecCCcc
Q 005778 91 ALIFTFGSYRLGVHGPGADIDALCVGPSYV 120 (677)
Q Consensus 91 ~~I~~FGSy~lGv~~p~SDID~l~v~P~~v 120 (677)
..++.|||++-|-+.++||||++++.+...
T Consensus 28 ~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~ 57 (114)
T 1no5_A 28 YTVWAFGSRVKGKAKKYSDLDLAIISEEPL 57 (114)
T ss_dssp SEEEEEGGGTTTCCCTTCCEEEEEECSSCC
T ss_pred CEEEEEeccCCCCCCCCCCeEEEEEeCCCC
Confidence 589999999999999999999999987543
No 15
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=96.98 E-value=0.002 Score=57.95 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeEEeecCCc
Q 005778 55 EKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSY 119 (677)
Q Consensus 55 ~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~ 119 (677)
..++++++.|++++....++ . + .-..++.|||++-|-+.++||||++++.+..
T Consensus 10 ~~~~~i~~~l~~~~~~l~~~----~--~------~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~ 62 (111)
T 2rff_A 10 ESQIRMLKLAKEIVEEVASS----F--P------NLEEVYIFGSRARGDYLDTSDIDILFVFKGI 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----C--T------TEEEEEEESHHHHSCCCTTCCEEEEEEESSC
T ss_pred cCHHHHHHHHHHHHHHHHHH----c--C------CccEEEEEeeeecCCCCCCCCEEEEEEecCC
Confidence 45677787887777665421 1 1 1267999999999999999999999988654
No 16
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=96.91 E-value=0.0015 Score=57.08 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeEEeecCCc
Q 005778 59 QVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSY 119 (677)
Q Consensus 59 ~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~ 119 (677)
++++.+++.+....++ .| -..++.|||++-|-+.++||||++++.+..
T Consensus 7 ~~l~~l~~~i~~l~~~----~~---------v~~v~LFGS~arG~~~~~SDiDl~V~~~~~ 54 (98)
T 1wot_A 7 ETLRARREAVLSLCAR----HG---------AVRVRVFGSVARGEAREDSDLDLLVAFEEG 54 (98)
T ss_dssp HHHHHHHHHHHHHHHH----HT---------CSSCEECSHHHHTCCCTTCCCEEEECCCSS
T ss_pred HHHHHHHHHHHHHHHH----cC---------CcEEEEEccccCCCCCCCCCEEEEEEeCCC
Confidence 5666666666554322 22 256999999999999999999999987643
No 17
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=96.73 E-value=0.0037 Score=54.42 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=26.4
Q ss_pred eEEEEeccccccCcCCC-CCeeEEeecCC
Q 005778 91 ALIFTFGSYRLGVHGPG-ADIDALCVGPS 118 (677)
Q Consensus 91 ~~I~~FGSy~lGv~~p~-SDID~l~v~P~ 118 (677)
..++.|||++-|-+.++ ||||++++.+.
T Consensus 18 ~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 18 AEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp CEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred cEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 78999999999999999 99999999875
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=94.70 E-value=0.036 Score=56.89 Aligned_cols=54 Identities=20% Similarity=0.113 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeEEeecCC
Q 005778 53 EDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPS 118 (677)
Q Consensus 53 E~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~ 118 (677)
|.-.|+.+.+.|+++++...+ ..+ .-.+|+.||||+-|-+.++||||++++...
T Consensus 15 ~~~~~q~Vq~eL~~ive~L~~----~~~--------~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 15 ENLYFQGVQHTIARWVDRLRE----EYA--------DAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH----HCT--------TEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred hccChHHHHHHHHHHHHHHHH----hcC--------CceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 344566666666666654332 111 016799999999999999999999999754
No 19
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=94.16 E-value=0.041 Score=55.69 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=26.2
Q ss_pred eEEEEeccccccCcCCCCCeeEEeecCCc
Q 005778 91 ALIFTFGSYRLGVHGPGADIDALCVGPSY 119 (677)
Q Consensus 91 ~~I~~FGSy~lGv~~p~SDID~l~v~P~~ 119 (677)
..|+.|||++-|-..++||||++++....
T Consensus 32 ~~~~lfGS~arg~~~~~SDiD~~v~~~~~ 60 (253)
T 1kny_A 32 KAIGVYGSLGRQTDGPYSDIEMMCVMSTE 60 (253)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred eEEEEEccccCCCCCCCCCeeEEEEecCc
Confidence 67999999999999999999999987654
No 20
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=93.80 E-value=0.43 Score=50.52 Aligned_cols=117 Identities=16% Similarity=0.219 Sum_probs=77.7
Q ss_pred CCeEEEEeccccccCcCCCCCeeEEeecCCccCcc---chHHHHHHHHHHhccCCceEEEeccCccceE-EEEe------
Q 005778 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSRE---EDFFFILHNILAEMEEVTELQPVLDAHVPVM-KFKF------ 158 (677)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re---~~Ff~~l~~~L~~~~~v~~l~~I~~ArVPII-Kf~~------ 158 (677)
...++..-||||=|-.+ ..|||+++..|...... ..++..+.+.|.+.+.++++......+.-++ ++..
T Consensus 171 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~~k~~~v~~l~~~~~~~~ 249 (335)
T 2fmp_A 171 SEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKE 249 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSEEEEEECCCCCTTCCC
T ss_pred CCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCCceEEEEEEeCCcccccC
Confidence 35899999999998877 56999999988432211 2578889999999888887766666654333 3322
Q ss_pred -cCceeeEeeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCC
Q 005778 159 -DGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNV 237 (677)
Q Consensus 159 -~GI~iDLsfa~l~~~~~p~~l~i~~~~~L~~lDe~s~rSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~ 237 (677)
.++.|||.++.... + .-.++-+-.+ ..| .|.++.||+++|+.=|-
T Consensus 250 ~~~~rVDl~~vp~~~------~------------------------~~aLl~fTGS-~~f---nr~lR~~A~~kG~kl~e 295 (335)
T 2fmp_A 250 YPHRRIDIRLIPKDQ------Y------------------------YCGVLYFTGS-DIF---NKNMRAHALEKGFTINE 295 (335)
T ss_dssp CCCEEEEEEECCGGG------H------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTEEECS
T ss_pred CCceEEEEEEECHHH------H------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCcccc
Confidence 17999998876321 0 1122222222 223 37888999999887666
Q ss_pred CCC
Q 005778 238 TGF 240 (677)
Q Consensus 238 ~G~ 240 (677)
+|.
T Consensus 296 ~Gl 298 (335)
T 2fmp_A 296 YTI 298 (335)
T ss_dssp SCE
T ss_pred ccc
Confidence 664
No 21
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=92.34 E-value=0.58 Score=49.56 Aligned_cols=116 Identities=22% Similarity=0.266 Sum_probs=74.9
Q ss_pred CCeEEEEeccccccCcCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCceEEEec-----cCcc-ceEEEEe---c
Q 005778 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVL-----DAHV-PVMKFKF---D 159 (677)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~I~-----~ArV-PIIKf~~---~ 159 (677)
...++..-||||=|-.+ ..|||+++..|..... ..++..+.+.|.+.+.+++.-... ..+. =|.++.. .
T Consensus 168 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~-~~ll~~v~~~l~~~~~i~~~l~~~~~~g~~~k~~~v~~l~~~~~~ 245 (335)
T 2bcq_A 168 SGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSH-RGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRR 245 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTT-TTCHHHHHHHHHHTTCEEEEEECCTTSTTCCEEEEEECCSSTTCC
T ss_pred CCcEEEEccccccCCCC-CCCeEEEEecCCchhh-hhHHHHHHHHHHhCCchHHHhhccccCCCCceEEEEEEccCCCCC
Confidence 35789999999999877 5699999998876543 367888899999888777644331 1122 1112221 5
Q ss_pred CceeeEeeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCCCC
Q 005778 160 GLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTG 239 (677)
Q Consensus 160 GI~iDLsfa~l~~~~~p~~l~i~~~~~L~~lDe~s~rSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G 239 (677)
++.|||.++.... + .-.++-+-.+ ..| -|.++.||+++|+.=+-+|
T Consensus 246 ~~rVDl~~vp~~~------~------------------------g~ALl~fTGS-~~f---nr~lR~~A~~~G~kL~e~G 291 (335)
T 2bcq_A 246 HRRLDIIVVPYSE------F------------------------ACALLYFTGS-AHF---NRSMRALAKTKGMSLSEHA 291 (335)
T ss_dssp CEEEEEEECCGGG------H------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTCEECSSC
T ss_pred ceEEEEEEECHHH------H------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCCccccc
Confidence 7899998775321 0 1122222222 222 4788999999988766677
Q ss_pred C
Q 005778 240 F 240 (677)
Q Consensus 240 ~ 240 (677)
.
T Consensus 292 l 292 (335)
T 2bcq_A 292 L 292 (335)
T ss_dssp E
T ss_pred c
Confidence 4
No 22
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=89.52 E-value=0.85 Score=47.47 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=58.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeEEeecCCccCccc
Q 005778 45 AGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREE 124 (677)
Q Consensus 45 ~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~ 124 (677)
.|+.|----++..++++++|.+.+++- ..=..|..+||+..|-...-||||+++++..... +
T Consensus 12 ~~~~~~~~~m~~~~e~l~~I~~~~~~d----------------~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~~~~--~ 73 (287)
T 3jz0_A 12 SGLVPRGSHMLKQKELIANVKNLTESD----------------ERITACMMYGSFTKGEGDQYSDIEFYIFLKHSIT--S 73 (287)
T ss_dssp ----------CHHHHHHHHHHHHHHHC----------------TTEEEEEECSGGGTTCCCTTCCEEEEEEECGGGT--T
T ss_pred cCcCCCCCCccCHHHHHHHHHHHHhcC----------------CCEEEEEEECCccCCCCCCccceeEEEEEcCcch--h
Confidence 456666666667777888877777641 1125689999999999999999999998754211 1
Q ss_pred hHHHHHHHHHHhccCCceEEEeccCccceEEEEe-cCceeeEeeeeccc
Q 005778 125 DFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF-DGLSIDLLYASISR 172 (677)
Q Consensus 125 ~Ff~~l~~~L~~~~~v~~l~~I~~ArVPIIKf~~-~GI~iDLsfa~l~~ 172 (677)
.| .. ..-|.....+- -..++.++ ..++.| +|+.|||.|..+..
T Consensus 74 ~f-~~-~~Wl~~fG~~~--~~f~~~~~-~~l~lF~Dg~riDl~l~~~~~ 117 (287)
T 3jz0_A 74 NF-DS-SNWLFDVAPYL--MLYKNEYG-TEVVIFDNLIRGEFHFLSEKD 117 (287)
T ss_dssp TC-CH-HHHHHHHCCEE--EEEECTTS-CEEEEETTSCEEEEEEEEGGG
T ss_pred hh-hh-HHHHHHhhhhh--eEeecccc-eEEEEecCCcEEEEEEeeHHH
Confidence 22 11 23333322211 11223333 224444 79999999998753
No 23
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=88.46 E-value=0.68 Score=44.85 Aligned_cols=114 Identities=17% Similarity=0.233 Sum_probs=73.4
Q ss_pred ccccccCCeEEEEeccccccCcCCCCCeeEEeecCCccCccchHHHHHHHHHHh--ccCCc-eEEEeccCccceEEEEe-
Q 005778 83 DQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAE--MEEVT-ELQPVLDAHVPVMKFKF- 158 (677)
Q Consensus 83 ~~~~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~--~~~v~-~l~~I~~ArVPIIKf~~- 158 (677)
.+..+.+++++..-||||=|-.+-+ |||+++..|.. ..+.+.|.+ .+.++ ++..-.+.++-+ ++..
T Consensus 24 ~~~ik~~g~~v~iaGS~RRgket~g-DiDiLit~~~~--------~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~~~ 93 (174)
T 1jaj_A 24 GQLIKILSKNIVAVGSLRREEKMLN-DVDLLIIVPEK--------KLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIEWE 93 (174)
T ss_dssp TEEEEECTTTEEEEEHHHHTCSEEC-CEEEEEEESSH--------HHHHTSSSEEEESSCEEEEEEETTTEEEE-EEESS
T ss_pred cccccCCCcEEEEeccccCCCCCCC-CEEEEEecCCH--------HHHHHHHHhccCCceeHhHeecCCCeEEE-EeCCC
Confidence 3444456789999999999988754 99999988742 235566777 77777 665555555433 3433
Q ss_pred -cCceeeEeeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCC
Q 005778 159 -DGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNV 237 (677)
Q Consensus 159 -~GI~iDLsfa~l~~~~~p~~l~i~~~~~L~~lDe~s~rSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~ 237 (677)
.|+.|||.++.... . .-.++-+-.+ +.| .+.++.||+++|+.=|-
T Consensus 94 ~~~~rVDl~~vp~~~------f------------------------g~ALl~fTGS-k~h---n~~lR~~A~~kG~~L~e 139 (174)
T 1jaj_A 94 KKTYQLDLFTALAEE------K------------------------PYAIFHFTGP-VSY---LIRIRAALKKKNYKLNQ 139 (174)
T ss_dssp SCCEEEEEEEEETTC------H------------------------HHHHHHHHSC-HHH---HHHHHHHHHHTTEEEET
T ss_pred CCceEEEEEEeCHHH------H------------------------HHHHHHhHCC-HHH---HHHHHHHHHHcCCCcCc
Confidence 68999999876321 0 1122222222 223 37788999999886666
Q ss_pred CCC
Q 005778 238 TGF 240 (677)
Q Consensus 238 ~G~ 240 (677)
+|.
T Consensus 140 ~Gl 142 (174)
T 1jaj_A 140 YGL 142 (174)
T ss_dssp TEE
T ss_pred ccc
Confidence 664
No 24
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=87.33 E-value=2 Score=45.81 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=41.3
Q ss_pred CCeEEEEeccccccCcCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCc
Q 005778 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVT 141 (677)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~ 141 (677)
...++..-||||=|--+ ..|||+|+..|..... ..++..+.+.|.+.+.|+
T Consensus 175 ~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~-~~ll~~v~~~L~~~~~i~ 225 (360)
T 2ihm_A 175 PGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQE-VGLLPKVMSCLQSQGLVL 225 (360)
T ss_dssp TTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTT-TTHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEccccccCCCc-cCCeEEEEecCChhhh-hhHHHHHHHHHHhCCCee
Confidence 46899999999999877 5699999998876433 368888999998877665
No 25
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=84.14 E-value=5.5 Score=42.86 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=38.9
Q ss_pred CCeEEEEeccccccCcCCCCCeeEEeecCCccCcc-chHHHHHHHHHHhccCCc
Q 005778 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSRE-EDFFFILHNILAEMEEVT 141 (677)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re-~~Ff~~l~~~L~~~~~v~ 141 (677)
...++..-||||=|--+ ..|||+|+..|...... ..++..+.+.|.+.+.|+
T Consensus 195 ~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~ 247 (381)
T 1jms_A 195 PDALVTMTGGFRRGKMT-GHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLL 247 (381)
T ss_dssp TTCEEEECHHHHTTCSC-BSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEccccccCCCC-cCCeEEEEeCCCccccchhhHHHHHHHHHHhCCCcc
Confidence 46899999999999887 45999999987653211 127778888888877664
No 26
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=81.92 E-value=4.7 Score=45.36 Aligned_cols=107 Identities=17% Similarity=0.098 Sum_probs=70.9
Q ss_pred CeEEEEeccccccCcCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCceEEEeccCccceEEEEecCceeeEeeee
Q 005778 90 NALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYAS 169 (677)
Q Consensus 90 ~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~I~~ArVPIIKf~~~GI~iDLsfa~ 169 (677)
..++..-||||=|-.+- .|||+++..|... .+.+.|.+.+.|.++....+.++-+ ++ -.|+.|||.++.
T Consensus 180 ~~~~~~~Gs~RRgke~~-gDiD~li~~~~~~--------~v~~~l~~~~~~~~~~~~g~~k~~~-~~-~~~~rvDl~~~~ 248 (575)
T 3b0x_A 180 VERAELCGSARRYKDTV-GDLDFLVASREGE--------RAVEGFVRLPQVKEVYAKGKERATV-FL-KNGLQVDLRVVP 248 (575)
T ss_dssp CCEEEECHHHHTTCSEE-SSEEEEEECSSHH--------HHHHHHHTSTTEEEEEEECSSEEEE-EE-TTSCEEEEEEEC
T ss_pred CcEEEEccccccCCCcc-CCeEEEEeCCCHH--------HHHHHHHhCcchhhHhhcCCCceEE-Ec-cCCcEEEEEEEC
Confidence 57899999999988774 5999999887531 3567777788877665544554333 11 269999999876
Q ss_pred ccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCChhhHHHHHHHHHHHHHHhCCCCCCCCCc
Q 005778 170 ISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFL 241 (677)
Q Consensus 170 l~~~~~p~~l~i~~~~~L~~lDe~s~rSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~L 241 (677)
... . .-.++-+-.. ..| .|.++.||++||+.=+-+|..
T Consensus 249 ~~~------~------------------------~~al~~~TGs-~~~---n~~lR~~A~~~g~~l~~~gl~ 286 (575)
T 3b0x_A 249 PES------Y------------------------GAGLQYLTGS-AAH---SIRLRALAQEKGLKLSEYGVF 286 (575)
T ss_dssp GGG------H------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTCEEETTEEE
T ss_pred HHH------H------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCCcchhhcc
Confidence 321 0 1122222222 223 478899999999887777754
No 27
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=71.74 E-value=7 Score=42.69 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=36.6
Q ss_pred CCeEEEEeccccccCcCCCCCeeEEeecCCc-cC-------ccchHHHHHHHHHHh
Q 005778 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSY-VS-------REEDFFFILHNILAE 136 (677)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~-v~-------re~~Ff~~l~~~L~~ 136 (677)
.+.-|..+|||.=|=-.++||||++++.+.. .+ ....||..+.+.+.+
T Consensus 153 ~~~aviamGk~Gr~EL~~~SDiDli~l~~~~~~~~~~~~~~~~~~~f~rla~~l~~ 208 (440)
T 1v4a_A 153 QPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIK 208 (440)
T ss_dssp CCCEEEECHHHHTTCCCSSCCEEEEEEECC--------CCSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccccccCcCCCCCcceEEEeCCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 4689999999999999999999999997643 11 113688888777664
No 28
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=63.39 E-value=11 Score=36.06 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=43.0
Q ss_pred CCeEEEEeccccc---cCcCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCceEEEeccCcc--ceEEEEecCcee
Q 005778 89 ANALIFTFGSYRL---GVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHV--PVMKFKFDGLSI 163 (677)
Q Consensus 89 ~~~~I~~FGSy~l---Gv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~I~~ArV--PIIKf~~~GI~i 163 (677)
.+..-...|||++ |+-.+.-|||+++- + .=...+.++|.+. +......-++... -...+.+.|+.|
T Consensus 32 ~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~-~-------~da~~~~~~L~~~-g~~~~~~~~~~~~~~~f~~~~i~~v~V 102 (169)
T 2fcl_A 32 EXVNWVVTGSLSFALQGVPVEVHDIDIQTD-E-------EGAYEIERIFSEF-VSXXVRFSSTEXICSHFGELIIDGIXV 102 (169)
T ss_dssp SSCCEEEEHHHHHHHTTCCCCCCSEEEEEC-H-------HHHHHHHHHTGGG-EEEEEEEEECSSEEEEEEEEEETTEEE
T ss_pred cCCCEEEeHHHHHHHcCCCCCCCccEEEec-c-------cCHHHHHHHHHHH-hhcccCCCccccccceeeEEeeCCEEE
Confidence 4677788899988 45557889999882 2 2234466777653 1112212222222 144566689999
Q ss_pred eEeee
Q 005778 164 DLLYA 168 (677)
Q Consensus 164 DLsfa 168 (677)
||...
T Consensus 103 Dlm~~ 107 (169)
T 2fcl_A 103 EIMGD 107 (169)
T ss_dssp EEEEE
T ss_pred Eeeec
Confidence 99954
No 29
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=59.37 E-value=21 Score=39.77 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=42.2
Q ss_pred HhhcCCCccc--cccCCeEEEEeccccccCcCCCCCeeEEeecCCccC------c---cchHHHHHHHHHHh
Q 005778 76 TRLRGYSDQM--VEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVS------R---EEDFFFILHNILAE 136 (677)
Q Consensus 76 ~~~~g~~~~~--~~~~~~~I~~FGSy~lGv~~p~SDID~l~v~P~~v~------r---e~~Ff~~l~~~L~~ 136 (677)
+...|.+... .+..+.-|.-+|++.=+=-.++||||++++.+.... + ...||..+.+.+.+
T Consensus 218 ~~~~G~p~~~~~~~~~~~aviamGklGg~EL~~~SDiDlifv~~~~~~~~t~g~~~~~~~~~f~rlaq~li~ 289 (498)
T 3k7d_A 218 VARYGKPNHLNEREGRGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMH 289 (498)
T ss_dssp HHHHCCBGGGTTCSSCSEEEEEEHHHHTTCCCTTCCEEEEEEECCCTTCBBSSSSCCBHHHHHHHHHHHHHH
T ss_pred HHHcCCCcccccCCCCCEEEEeeccccccccCcccccceeeeecCcccccccccccchHHHHHHHHHHHHHH
Confidence 3445765211 123468999999999999999999999998764321 0 13688888776664
No 30
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=52.00 E-value=19 Score=37.17 Aligned_cols=74 Identities=19% Similarity=0.050 Sum_probs=35.5
Q ss_pred eEEEEeccccccC--cCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCceEEEec--c--------C-ccceEEEE
Q 005778 91 ALIFTFGSYRLGV--HGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVL--D--------A-HVPVMKFK 157 (677)
Q Consensus 91 ~~I~~FGSy~lGv--~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~I~--~--------A-rVPIIKf~ 157 (677)
--|+..||...+- .-.-||+|+++++... ..|... ...|.+ +.++-.+. + . .-|..-+.
T Consensus 24 ~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~----~~~~~~-~~wl~~---fg~~l~~~~~e~~~~~~~~~~~~~~~l~l 95 (294)
T 2pbe_A 24 RLVTLEGSRTNRNIPPDNFQDYDISYFVTDV----ESFKEN-DQWLEI---FGKRIMMQKPEDMELFPPELGNWFSYIIL 95 (294)
T ss_dssp EEEEEC------------CCCEEEEEEESCH----HHHHTC-SGGGGG---GCCEEEEECTTSCSSSCCCSTTCEEEEEE
T ss_pred EEEEEecCCCCCCCCCCCcccceEEEEEcCc----hHhhhh-HHHHHH---HhhHHhhccccccccCcccCCCceeEEEE
Confidence 4578889999855 7889999999998533 123211 112222 22222221 1 1 22344344
Q ss_pred e-cCceeeEeeeeccc
Q 005778 158 F-DGLSIDLLYASISR 172 (677)
Q Consensus 158 ~-~GI~iDLsfa~l~~ 172 (677)
+ +|+.|||.|..+..
T Consensus 96 f~dg~rIDl~~~~~~~ 111 (294)
T 2pbe_A 96 FEDGNKLDLTLIPIRE 111 (294)
T ss_dssp ETTSCEEEEEEEEGGG
T ss_pred ecCCcEEEEEEecHHH
Confidence 4 79999999998754
No 31
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=46.36 E-value=29 Score=39.02 Aligned_cols=94 Identities=19% Similarity=0.235 Sum_probs=58.4
Q ss_pred EEEeccccccCcCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCceEEEeccCccceEEEEecCceeeEeeeeccc
Q 005778 93 IFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISR 172 (677)
Q Consensus 93 I~~FGSy~lGv~~p~SDID~l~v~P~~v~re~~Ff~~l~~~L~~~~~v~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~ 172 (677)
+..-||||=|-.+-+ |||+++.. .. +. + |.+.+.|+ .-.+.++-+ ++ .|+.|||.++....
T Consensus 182 ~~~~Gs~RR~~e~~g-DiD~li~~-~~----~~----v---l~~~~~v~---~~g~~k~~~-~~--~~~~vDl~~~~~~~ 242 (578)
T 2w9m_A 182 PAPAGDVRRGLETVR-AAELTVTG-TP----DD----V---LARLPELT---VQGDGVLSG-DY--EGVPVEIACAPAEA 242 (578)
T ss_dssp CEECHHHHHTCSEES-SEEEEEES-CH----HH----H---HHHCTTCE---EC---CEEE-EE--TTEEEEEEEECTTT
T ss_pred CEEecccccCCCccC-CEEEEEec-Ch----HH----H---HhcCccce---ecCCceEEE-EE--CCEEEEEEEECHHH
Confidence 888999999987754 99999886 21 11 1 66667665 222334322 23 89999999876321
Q ss_pred cccccccccccccccCCCCcccccccchhhHHHHHHHhCCChhhHHHHH-HHHHHHHHHhCCCCCCCCCc
Q 005778 173 LVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTL-RCLKFWAKRRGVYSNVTGFL 241 (677)
Q Consensus 173 ~~~p~~l~i~~~~~L~~lDe~s~rSLNG~Rvtd~Il~lVp~~~~FR~ll-r~IK~WAK~RGIysn~~G~L 241 (677)
. .-.++- ... . -. |.++.||++||+.=+-+|..
T Consensus 243 ------~------------------------~~al~~-~TG-~----~n~~~lr~~A~~~g~~l~~~gl~ 276 (578)
T 2w9m_A 243 ------R------------------------GALDLL-RSG-E----HFAGQVQAAAQARGFTLTAGGLS 276 (578)
T ss_dssp ------H------------------------HHHHHH-TSC-H----HHHHHHHHHHHTTTCEEETTEEE
T ss_pred ------H------------------------HHHHHH-Hhh-h----hHHHHHHHHHHHcCCCcChhhcc
Confidence 0 112222 222 1 23 78899999999877777754
No 32
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=20.08 E-value=60 Score=21.95 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=10.4
Q ss_pred ccccccCCCCCcCCCCCcccc
Q 005778 518 SGLKRKKDPESVDQDGPEKRQ 538 (677)
Q Consensus 518 ~~~kr~~~~~~~~~~~~~~~~ 538 (677)
+..|||++=+ .+.+.|.||.
T Consensus 6 rrrkrkrewd-ddddppkkrr 25 (28)
T 3ukx_C 6 RRRKRKREWD-DDDDPPKKRR 25 (28)
T ss_dssp CCCCCCCCCC-CSSSCCSCCC
T ss_pred HHHHhhcccc-cCCCchhhhh
Confidence 3445555443 4445566664
Done!