BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005782
(677 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 141/598 (23%), Positives = 243/598 (40%), Gaps = 135/598 (22%)
Query: 134 VSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIV 193
VS++ + + + F + V + K SVM +YN++NG + +LK+ +R EW G+++
Sbjct: 181 VSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKKVLREEWGFEGFVM 240
Query: 194 SDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDC-GPFLGLHTE---------SAVQRG 243
SD + P + ++AG DL G ++TE A++ G
Sbjct: 241 SDW----------YAGDNP----VEQLKAGNDLIMPGKAYQVNTERRDEIEEIMEALKEG 286
Query: 244 LLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGIVL 303
LSE ++ + N L V + PS + Y + D+ H ++A EA +G+VL
Sbjct: 287 KLSEEVLDECVRNILKVLVNA------PSFKNYRYSNKPDL--EKHAKVAYEAGAEGVVL 338
Query: 304 LKNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYAGIACGYTTP------LQGIGRYAR 357
L+N+ +LPLS + +A+ G T+ G G T P L+GI
Sbjct: 339 LRNE-EALPLSE--NSKIALFGTGQIETIK-----GGTGSGDTHPRYAISILEGIKERGL 390
Query: 358 TIHQQGCKDVACADDQL------------FGAAID---------------ASRQADATIL 390
++ K ++ +G I +++ D ++
Sbjct: 391 NFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKEIHKLAKKNDVAVI 450
Query: 391 VMGLDQSIEAEALDR----AGLLLPGRQQELVSKVS--MASKGPTILVLMS-GGPIDVAF 443
V+ I E DR L + +L+ VS +G ++VL++ G P++V
Sbjct: 451 VIS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLNIGSPVEVVS 507
Query: 444 AKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNPGGKLPMTWYPQEYITNLPMTEMAMRP 503
++ ++W GQ G +AD+L G NP GKLP T +P++Y +++P P
Sbjct: 508 WRDLVDGILLVWQA--GQETGRIVADVLTGRINPSGKLPTT-FPRDY-SDVPSWTF---P 560
Query: 504 SQSKRYPGRT---------YRFYKGPVV---YPFGHGMSYTNFXXXXXXXXXXXXXXLDG 551
+ K P + YR+Y V Y FG+G+SYT F
Sbjct: 561 GEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTF----------------- 603
Query: 552 RHGSINATISGKAIKVTHAKCNRLTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHW-APHK 610
+ +N + G+ TL VQ ++N G + G V+ P G P +
Sbjct: 604 EYSDLNVSFDGE------------TLRVQYRIENTGGRAGKEVSQVYIKAPKGKIDKPFQ 651
Query: 611 QLVAFEKVH-VPAGAQQRVGINIHVCKYLSVVDRSGTRRIPLGEHNIHIGGTKHSVSL 667
+L AF K + G + V + I V S + GE+ + +G + ++ L
Sbjct: 652 ELKAFHKTRLLNPGESEEVVLEIPVRDLASFNGEEWV--VEAGEYEVRVGASSRNIKL 707
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 140/598 (23%), Positives = 243/598 (40%), Gaps = 135/598 (22%)
Query: 134 VSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIV 193
VS++ + + + F + V + K SVM +YN++NG + +LK+ +R EW G+++
Sbjct: 181 VSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKKVLREEWGFEGFVM 240
Query: 194 SDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDC-GPFLGLHTE---------SAVQRG 243
S +Y + + ++AG DL G ++TE A++ G
Sbjct: 241 S------AWYAGDN--------PVEQLKAGNDLIMPGKAYQVNTERRDEIEEIMEALKEG 286
Query: 244 LLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGIVL 303
LSE ++ + N L V + PS + Y + D+ H ++A EA +G+VL
Sbjct: 287 KLSEEVLDECVRNILKVLVNA------PSFKNYRYSNKPDL--EKHAKVAYEAGAEGVVL 338
Query: 304 LKNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYAGIACGYTTP------LQGIGRYAR 357
L+N+ +LPLS + +A+ G T+ G G T P L+GI
Sbjct: 339 LRNE-EALPLSE--NSKIALFGTGQIETIK-----GGTGSGDTHPRYAISILEGIKERGL 390
Query: 358 TIHQQGCKDVACADDQL------------FGAAID---------------ASRQADATIL 390
++ K ++ +G I +++ D ++
Sbjct: 391 NFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKEIHKLAKKNDVAVI 450
Query: 391 VMGLDQSIEAEALDR----AGLLLPGRQQELVSKVS--MASKGPTILVLMS-GGPIDVAF 443
V+ I E DR L + +L+ VS +G ++VL++ G P++V
Sbjct: 451 VIS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLNIGSPVEVVS 507
Query: 444 AKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNPGGKLPMTWYPQEYITNLPMTEMAMRP 503
++ ++W GQ G +AD+L G NP GKLP T +P++Y +++P P
Sbjct: 508 WRDLVDGILLVWQA--GQETGRIVADVLTGRINPSGKLPTT-FPRDY-SDVPSWTF---P 560
Query: 504 SQSKRYPGRT---------YRFYKGPVV---YPFGHGMSYTNFXXXXXXXXXXXXXXLDG 551
+ K P + YR+Y V Y FG+G+SYT F
Sbjct: 561 GEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTF----------------- 603
Query: 552 RHGSINATISGKAIKVTHAKCNRLTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHW-APHK 610
+ +N + G+ TL VQ ++N G + G V+ P G P +
Sbjct: 604 EYSDLNVSFDGE------------TLRVQYRIENTGGRAGKEVSQVYIKAPKGKIDKPFQ 651
Query: 611 QLVAFEKVH-VPAGAQQRVGINIHVCKYLSVVDRSGTRRIPLGEHNIHIGGTKHSVSL 667
+L AF K + G + V + I V S + GE+ + +G + ++ L
Sbjct: 652 ELKAFHKTRLLNPGESEEVVLEIPVRDLASFNGEEWV--VEAGEYEVRVGASSRNIKL 707
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 144/584 (24%), Positives = 229/584 (39%), Gaps = 100/584 (17%)
Query: 139 IEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDS 198
+ + + PF V + VASVMCSYN+VN C D L+ ++ + GY+++D
Sbjct: 182 LHELYTWPFADAV-QANVASVMCSYNKVNTTWACEDQYTLQTVLKDQLGFPGYVMTD--- 237
Query: 199 VGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPFL-GLHTESAVQRGLLSEIDINNALVNT 257
++ QH T + D G D + L G +AV + +++ +
Sbjct: 238 ----WNAQHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSNQVPTSRVDDMVTRI 293
Query: 258 LTVQMRLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGIVLLKNQGPSLPLSHIR 317
L G Y +H+ AR GIVLLKN LPL +
Sbjct: 294 LAAWYLTGQ-----DQAGYPSFNISRNVQGNHKTNVRAIARDGIVLLKNDANILPLK--K 346
Query: 318 HRTVAVIGPNSDVTVTMIGNYA----------------GIACG--------YTTPLQGIG 353
++AV+G + +IGN+A G+ G + P I
Sbjct: 347 PASIAVVG-----SAAIIGNHARNSPSCNDKGCDDGALGMGWGSGAVNYPYFVAPYDAIN 401
Query: 354 RYARTIHQQGCK-DVACADDQLFGAAIDASRQADATILVMGLDQ-----SIEAEALDRAG 407
A + QG + ++ D+ GA+ A+R D I+ + D ++E A DR
Sbjct: 402 TRASS---QGTQVTLSNTDNTSSGAS--AARGKDVAIVFITADSGEGYITVEGNAGDRNN 456
Query: 408 LLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVAFAKNDPRIAAIIWAGYPGQAGGTAI 467
L LV V+ A+ I+V+ S G I + P++ A++WAG P Q G A+
Sbjct: 457 LDPWHNGNALVQAVAGANSN-VIVVVHSVGAIILEQILALPQVKAVVWAGLPSQESGNAL 515
Query: 468 ADILFGTSNPGGKLPMTW--YPQEYITNLPMTEMAMRPSQSKRYPGRTYRFYKGPVV--- 522
D+L+G +P GKL T P +Y T + G + F +G +
Sbjct: 516 VDVLWGDVSPSGKLVYTIAKSPNDYNTRI--------------VSGGSDSFSEGLFIDYK 561
Query: 523 ----------YPFGHGMSYTNFXXXXXXXXXXXXXXLDGRHGSINATISGKAIKVTHAKC 572
Y FG+G+SYT F L + + +G + +
Sbjct: 562 HFDDANITPRYEFGYGLSYTKF----------NYSRLSVLSTAKSGPATGAVVPGGPSDL 611
Query: 573 NRLTLGVQVDVKNVGSKDGAHTLLVFST-PPAGHWAPHKQLVAFEKVHVPAGAQQRVGIN 631
+ V VD+ N G GA ++ T P + P KQL F K+++ G N
Sbjct: 612 FQNVATVTVDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPGQSGTATFN 671
Query: 632 IHVCKYLSVVDRSGTRR-IPLGEHNIHIGGTKHSVSLHAATLGV 674
I + LS D + + +P G I +G + + L +TL V
Sbjct: 672 IR-RRDLSYWDTASQKWVVPSGSFGISVGASSRDIRL-TSTLSV 713
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 142/571 (24%), Positives = 230/571 (40%), Gaps = 74/571 (12%)
Query: 139 IEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDS 198
+ + + PF V + VASVMCSYN+VN C D L+ ++ + GY+++D
Sbjct: 181 LHELYTWPFADAV-QANVASVMCSYNKVNTTWACEDQYTLQTVLKDQLGFPGYVMTD--- 236
Query: 199 VGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPFL-GLHTESAVQRGLLSEIDINNALVNT 257
++ QH T + D G D + L G +AV + +++ +
Sbjct: 237 ----WNAQHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSNQVPTSRVDDMVTRI 292
Query: 258 LTVQMRLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGIVLLKNQGPSLPLSHIR 317
L G Y +H+ AR GIVLLKN LPL +
Sbjct: 293 LAAWYLTGQ-----DQAGYPSFNISRNVQGNHKTNVRAIARDGIVLLKNDANILPLK--K 345
Query: 318 HRTVAVIGPNSDVTVTMIGNYA----------------GIACG--------YTTPLQGIG 353
++AV+G + +IGN+A G+ G + P I
Sbjct: 346 PASIAVVG-----SAAIIGNHARNSPSCNDKGCDDGALGMGWGSGAVNYPYFVAPYDAIN 400
Query: 354 RYARTIHQQGCK-DVACADDQLFGAAIDASRQADATILVMGLDQ-----SIEAEALDRAG 407
A + QG + ++ D+ GA+ A+R D I+ + D ++E A DR
Sbjct: 401 TRASS---QGTQVTLSNTDNTSSGAS--AARGKDVAIVFITADSGEGYITVEGNAGDRNN 455
Query: 408 LLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVAFAKNDPRIAAIIWAGYPGQAGGTAI 467
L LV V+ A+ I+V+ S G I + P++ A++WAG P Q G A+
Sbjct: 456 LDPWHNGNALVQAVAGANSN-VIVVVHSVGAIILEQILALPQVKAVVWAGLPSQESGNAL 514
Query: 468 ADILFGTSNPGGKLPMTW--YPQEYITNLPMTEMAMRPSQSKRYPGRTYRFYKGPVVYPF 525
D+L+G +P GKL T P +Y T + ++ + S+ + + Y F
Sbjct: 515 VDVLWGDVSPSGKLVYTIAKSPNDYNTRI-VSGGSDSFSEGLFIDYKHFDDANITPRYEF 573
Query: 526 GHGMSYTNFXXXXXXXXXXXXXXLDGRHGSINATISGKAIKVTHAKCNRLTLGVQVDVKN 585
G+G+SYT F L + + +G + + + V VD+ N
Sbjct: 574 GYGLSYTKF----------NYSRLSVLSTAKSGPATGAVVPGGPSDLFQNVATVTVDIAN 623
Query: 586 VGSKDGAHTLLVFST-PPAGHWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRS 644
G GA ++ T P + P KQL F K+++ G NI + LS D +
Sbjct: 624 SGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPGQSGTATFNIR-RRDLSYWDTA 682
Query: 645 GTRR-IPLGEHNIHIGGTKHSVSLHAATLGV 674
+ +P G I +G + + L +TL V
Sbjct: 683 SQKWVVPSGSFGISVGASSRDIRL-TSTLSV 712
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 139/308 (45%), Gaps = 46/308 (14%)
Query: 368 ACADDQLFGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKG 427
A DD+ A + + + D +L++GL+ E E DR + LP R ELV V A+
Sbjct: 557 AIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPN 616
Query: 428 PTILVLMSGGPIDVAFAKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNPGGKLPMTWYP 487
T++V SG P++ + ++ A++ A Y G G AIAD+L+G P GKL ++W P
Sbjct: 617 -TVIVNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSW-P 671
Query: 488 QEYITNLPM----TEMAMRPSQSKRYPGRTYRFYKG---PVVYPFGHGMSYTNFXXXXXX 540
+ N TE + G YR+Y+ V +PFG+G+SYT F
Sbjct: 672 FKLQDNPAFLNFKTEFGRVIYGEDIFVG--YRYYEKLQRKVAFPFGYGLSYTTF------ 723
Query: 541 XXXXXXXXLDGRHGSINATISGKAIKVTHAKCNRLTLGVQVDVKNVGSK-DGAHTLLV-F 598
+ ++ K + + VDVKN G K G+ + V F
Sbjct: 724 -----------------------ELDISDFKVTDDKIAISVDVKNTGDKFAGSEVVQVYF 760
Query: 599 STPPAGHWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRS-GTRRIPLGEHNIH 657
S + P K+L FEKVH+ G ++ V I++ + +S + G + GE+ +
Sbjct: 761 SALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVEAGEYLVS 820
Query: 658 IGGTKHSV 665
+G + +
Sbjct: 821 VGTSSDDI 828
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 95/232 (40%), Gaps = 37/232 (15%)
Query: 134 VSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIV 193
VS++ + + + PFR+ V +M +YN+VNG +L +R EW+ +G ++
Sbjct: 164 VSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDILRDEWKWDGMLM 223
Query: 194 SDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPFLGLHTESAVQRGLLSEIDINNA 253
SD G Y A AI+ GLD++ T + V L S I
Sbjct: 224 SDW--FGTY------------TTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTE 269
Query: 254 LVNTLTVQM------------RLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGI 301
V+ Q+ + G+ + P S T + +L + A I
Sbjct: 270 DVDDRVRQVLKMIKFVVDNLEKTGIVENGPESTSNN--------TKETSDLLRKIAADSI 321
Query: 302 VLLKNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYAGIACGY-TTPLQGI 352
VLLKN+ LPL + + VIGPN+ + G A + Y +P +GI
Sbjct: 322 VLLKNKNNILPLK--KEDNIIVIGPNAKAKTSSGGGSASMNSYYVVSPYEGI 371
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 138/308 (44%), Gaps = 46/308 (14%)
Query: 368 ACADDQLFGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKG 427
A DD+ A + + + D +L++GL+ E E DR LP R ELV V A+
Sbjct: 557 AIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENXDLPKRTNELVRAVLKANPN 616
Query: 428 PTILVLMSGGPIDVAFAKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNPGGKLPMTWYP 487
T++V SG P++ + ++ A++ A Y G G AIAD+L+G P GKL ++W P
Sbjct: 617 -TVIVNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSW-P 671
Query: 488 QEYITNLPM----TEMAMRPSQSKRYPGRTYRFYKG---PVVYPFGHGMSYTNFXXXXXX 540
+ N TE + G YR+Y+ V +PFG+G+SYT F
Sbjct: 672 FKLQDNPAFLNFKTEFGRVIYGEDIFVG--YRYYEKLQRKVAFPFGYGLSYTTF------ 723
Query: 541 XXXXXXXXLDGRHGSINATISGKAIKVTHAKCNRLTLGVQVDVKNVGSK-DGAHTLLV-F 598
+ ++ K + + VDVKN G K G+ + V F
Sbjct: 724 -----------------------ELDISDFKVTDDKIAISVDVKNTGDKFAGSEVVQVYF 760
Query: 599 STPPAGHWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRS-GTRRIPLGEHNIH 657
S + P K+L FEKVH+ G ++ V I++ + +S + G + GE+ +
Sbjct: 761 SALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVEAGEYLVS 820
Query: 658 IGGTKHSV 665
+G + +
Sbjct: 821 VGTSSDDI 828
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 36/207 (17%)
Query: 134 VSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIV 193
VS++ + + + PFR+ V + +YN+VNG +L +R EW+ +G +
Sbjct: 164 VSERALREIYLEPFRLAVKHANPVCIXTAYNKVNGEHCSQSKKLLIDILRDEWKWDGXLX 223
Query: 194 SDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPFLGLHTESAVQRGLLSEIDINNA 253
SD G Y A AI+ GLD++ T + V L S I
Sbjct: 224 SDW--FGTY------------TTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTE 269
Query: 254 LVNTLTVQM------------RLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGI 301
V+ Q+ + G+ + P S T + +L + A I
Sbjct: 270 DVDDRVRQVLKXIKFVVDNLEKTGIVENGPESTSNN--------TKETSDLLRKIAADSI 321
Query: 302 VLLKNQGPSLPLSHIRHRTVAVIGPNS 328
VLLKN+ LPL + + VIGPN+
Sbjct: 322 VLLKNKNNILPLK--KEDNIIVIGPNA 346
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 103/388 (26%), Positives = 171/388 (44%), Gaps = 53/388 (13%)
Query: 134 VSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIV 193
+ ++ + D + + +G V SVM S+N NG D ++L ++ + +G++V
Sbjct: 234 IDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVV 292
Query: 194 SDCDSVGVYYDTQHFTSTPE-EAAADAIRAGLDLDCGP--FLGLH--TESAVQRGLLSEI 248
SD ++ F + E A AI AG+D+ P F + T V+ G+++E
Sbjct: 293 SD-------WNAHKFVEGCDLEQCAQAINAGVDVIMVPEHFEAFYHNTVKQVKAGVIAES 345
Query: 249 DINNALVNTLTVQMRLGMF-DGEPSSQPYGHLGPKDVCTPDHQELALEAARQGIVLLKNQ 307
IN+A+ L ++R G+F +PS++P P+ + +H+ LA EA R+ +VLLKN
Sbjct: 346 RINDAVRRFLRAKIRWGVFTKSKPSARPESQ-HPQWLGAAEHRTLAREAVRKSLVLLKNN 404
Query: 308 GPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYAGIACGYTTPLQGIGRY------ARTIHQ 361
LP+ VA G N+ I AG G++ QG A +I
Sbjct: 405 ESILPIKASSRILVAGKGANA------INMQAG---GWSVSWQGTDNTNSDFPNATSIFS 455
Query: 362 QGCKDVACADDQL-FGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSK 420
V A ++ + + + + D I+V+G + AE LL Q E
Sbjct: 456 GLQSQVTKAGGKITLSESGEYTSKPDVAIVVIG--EEPYAEWFGDIELL--EFQHETKHA 511
Query: 421 VSM-----ASKGPTILVLMSGGPIDVAFAKNDPRIAAIIWAGYPGQAGGTAIADILFGTS 475
+++ A P + V +SG P+ V N A + A PG + G +AD+L T+
Sbjct: 512 LALLKQLKADNIPVVTVFLSGRPLWVNKELNASD--AFVAAWLPG-SEGEGVADVLL-TN 567
Query: 476 NPG-------GKLPMTW--YPQEYITNL 494
G GKL +W Y ++ NL
Sbjct: 568 KQGKTQFDFTGKLSFSWPKYDDQFTLNL 595
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 103/388 (26%), Positives = 171/388 (44%), Gaps = 53/388 (13%)
Query: 134 VSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIV 193
+ ++ + D + + +G V SVM S+N NG D ++L ++ + +G++V
Sbjct: 234 IDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVV 292
Query: 194 SDCDSVGVYYDTQHFTSTPE-EAAADAIRAGLDLDCGP--FLGLH--TESAVQRGLLSEI 248
SD ++ F + E A AI AG+D+ P F + T V+ G+++E
Sbjct: 293 SD-------WNAHKFVEGCDLEQCAQAINAGVDVIMVPEHFEAFYHNTVKQVKAGVIAES 345
Query: 249 DINNALVNTLTVQMRLGMF-DGEPSSQPYGHLGPKDVCTPDHQELALEAARQGIVLLKNQ 307
IN+A+ L ++R G+F +PS++P P+ + +H+ LA EA R+ +VLLKN
Sbjct: 346 RINDAVRRFLRAKIRWGVFTKSKPSARPESQ-HPQWLGAAEHRTLAREAVRKSLVLLKNN 404
Query: 308 GPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYAGIACGYTTPLQGIGRY------ARTIHQ 361
LP+ VA G N+ I AG G++ QG A +I
Sbjct: 405 ESILPIKASSRILVAGKGANA------INMQAG---GWSVSWQGTDNTNSDFPNATSIFS 455
Query: 362 QGCKDVACADDQL-FGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSK 420
V A ++ + + + + D I+V+G + AE LL Q E
Sbjct: 456 GLQSQVTKAGGKITLSESGEYTSKPDVAIVVIG--EEPYAEWFGDIELL--EFQHETKHA 511
Query: 421 VSM-----ASKGPTILVLMSGGPIDVAFAKNDPRIAAIIWAGYPGQAGGTAIADILFGTS 475
+++ A P + V +SG P+ V N A + A PG + G +AD+L T+
Sbjct: 512 LALLKQLKADNIPVVTVFLSGRPLWVNKELNASD--AFVAAWLPG-SEGEGVADVLL-TN 567
Query: 476 NPG-------GKLPMTW--YPQEYITNL 494
G GKL +W Y ++ NL
Sbjct: 568 KQGKTQFDFTGKLSFSWPKYDDQFTLNL 595
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 112/259 (43%), Gaps = 45/259 (17%)
Query: 116 VITTASSFNATLWE-----AIGRVSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVP 170
++TTA F A E V +Q + + + P + AS MC+YN +NG P
Sbjct: 191 LMTTAKHFAANNQENNRFSVNANVDEQTLRE-IEFPAFEASSKAGAASFMCAYNGLNGKP 249
Query: 171 TCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCG- 229
+C + +L +R +W G+++SD + +TP DAI GLD + G
Sbjct: 250 SCGNDELLNNVLRTQWGFQGWVMSD------------WLATP---GTDAITKGLDQEMGV 294
Query: 230 ---------------PFLGLHTESAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQ 274
F G ++AV G + E + + + + G+ P+ +
Sbjct: 295 ELPGDVPKGEPSPPAKFFGEALKTAVLNGTVPEAAVTRSAERIVGQMEKFGLLLATPAPR 354
Query: 275 PYGHLGPKDVCTPDHQELALEAARQGIVLLKNQGPSLPLSHIRHRTVAVIGPNS-DVTVT 333
P +D Q ++ + A G VLL+N+G +LPL+ +++AVIGP + D VT
Sbjct: 355 PE-----RDKA--GAQAVSRKVAENGAVLLRNEGQALPLAGDAGKSIAVIGPTAVDPKVT 407
Query: 334 MIGNYAGIACGYTTPLQGI 352
+G+ + PL I
Sbjct: 408 GLGSAHVVPDSAAAPLDTI 426
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 116/264 (43%), Gaps = 46/264 (17%)
Query: 379 IDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGP 438
+ ++R+A T +V D E +DR L LPG Q +L+S V+ A+ TI+VL +G
Sbjct: 560 VKSARKAR-TAVVFAYDDGTEG--VDRPNLSLPGTQDKLISAVADANPN-TIVVLNTGSS 615
Query: 439 IDVAFAKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNPGGKLPMTWYP----QEYITNL 494
+ + + R +W YPGQAG A A +L+G NP GKL + +P Q +
Sbjct: 616 VLMPWLSKT-RAVLDMW--YPGQAGAEATAALLYGDVNPSGKLTQS-FPAAENQHAVAGD 671
Query: 495 PMTEMAMRPSQSKRYPGRT-YRFYKGPVV---YPFGHGMSYTNFXXXXXXXXXXXXXXLD 550
P + + Q+ R YR++ V +PFGHG+SYT+F
Sbjct: 672 PTSYPGVDNQQTYREGIHVGYRWFDKENVKPLFPFGHGLSYTSFTQSAP----------- 720
Query: 551 GRHGSINATISGKAIKVTHAKCNRLTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPH- 609
T + + L V V V+N G + G + + AP
Sbjct: 721 -----------------TVVRTSTGGLKVTVTVRNSGKRAGQEVVQAYLGASPNVTAPQA 763
Query: 610 -KQLVAFEKVHVPAGAQQRVGINI 632
K+LV + KV + AG + V +N+
Sbjct: 764 KKKLVGYTKVSLAAGEAKTVTVNV 787
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 20/97 (20%)
Query: 52 RVNDLIGRLSLQEKVKLL----------ISGAAAVPRLGIKGYEWWSEALHGVSNVGPGT 101
R +L+ +++L EK+ + + VPRLGI ++ +G+ VG
Sbjct: 53 RAAELVAQMTLDEKISFVHWALDPDRQNVGYLPGVPRLGIPELRA-ADGPNGIRLVGQT- 110
Query: 102 KFGGDFPGATSFPQVITTASSFNATLWEAIGRVSKQD 138
AT+ P + AS+F+ T+ ++ G+V +D
Sbjct: 111 --------ATALPAPVALASTFDDTMADSYGKVMGRD 139
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 167/376 (44%), Gaps = 54/376 (14%)
Query: 145 VPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYD 204
+P M+ V++VM SY+ NGV A+ +++ ++ + G+++SD + G+
Sbjct: 235 MPAYKNAMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWE--GIDRI 292
Query: 205 TQHFTSTPEEAAADAIRAGLDLDCGP-----FLGLHTESAVQRGLLSEIDINNALVNTLT 259
T S + +I AGLD+ P F+ + T V G++ I++A+ L
Sbjct: 293 TTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILT-GHVNGGVIPMSRIDDAVTRILR 351
Query: 260 VQMRLGMFDGEPSSQP--YGHLGPKDVCTPDHQELALEAARQGIVLLKN-----QGPSLP 312
V+ +G+F+ P + P LG + +H++LA EAAR+ +VLLKN P LP
Sbjct: 352 VKFTMGLFE-NPYADPAMAEQLGKQ-----EHRDLAREAARKSLVLLKNGKTSTDAPLLP 405
Query: 313 LSHIRHRTVAVIGPNSDVTVTMIGNYAGIAC-GYTTPLQG-IGRYARTIHQQGCKDVACA 370
L + + V G ++D G C G+T QG GR T+ + V A
Sbjct: 406 LPK-KAPKILVAGSHAD--------NLGYQCGGWTIEWQGDTGR--TTVGTTILEAVKAA 454
Query: 371 DDQ----LFGAAIDA----SRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVS 422
D +F DA S I+ +G E + D L +P V V
Sbjct: 455 VDPSTVVVFAENPDAEFVKSGGFSYAIVAVGEHPYTETKG-DNLNLTIPEPGLSTVQAVC 513
Query: 423 MASKGPTILVLMSGGPIDVA--FAKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNPGGK 480
+ T+L+ SG P+ V A +D +AA + PG G + D LFG G+
Sbjct: 514 GGVRCATVLI--SGRPVVVQPLLAASDALVAAWL----PGSE-GQGVTDALFGDFGFTGR 566
Query: 481 LPMTWYPQEYITNLPM 496
LP TW+ + + LPM
Sbjct: 567 LPRTWF--KSVDQLPM 580
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 36/145 (24%)
Query: 42 FCQVSLPIPQRVNDLIGRLSLQEKVKL---------------------LISGAAAVPRLG 80
+ + P+ RV DL+GR++L EK+ L+SG +VPR G
Sbjct: 5 YKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKG 64
Query: 81 IKGYEWWSEALHGVSNVGPGTKFG-------------GDFPGATSFPQVITTASSFNATL 127
E W + + G T+ G + GAT FP + ++ + L
Sbjct: 65 ATAKE-WQDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYL 123
Query: 128 WEAIGRVSKQDIEDT-FDVPFRMCV 151
+ IG + ++ T F C+
Sbjct: 124 VKRIGEATALEVRATGIQYAFAPCI 148
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 167/376 (44%), Gaps = 54/376 (14%)
Query: 145 VPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYD 204
+P M+ V++VM SY+ NGV A+ +++ ++ + G+++SD + G+
Sbjct: 235 MPAYKNAMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWE--GIDRI 292
Query: 205 TQHFTSTPEEAAADAIRAGLDLDCGP-----FLGLHTESAVQRGLLSEIDINNALVNTLT 259
T S + +I AGLD+ P F+ + T V G++ I++A+ L
Sbjct: 293 TTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILT-GHVNGGVIPMSRIDDAVTRILR 351
Query: 260 VQMRLGMFDGEPSSQP--YGHLGPKDVCTPDHQELALEAARQGIVLLKN-----QGPSLP 312
V+ +G+F+ P + P LG + +H++LA EAAR+ +VLLKN P LP
Sbjct: 352 VKFTMGLFE-NPYADPAMAEQLGKQ-----EHRDLAREAARKSLVLLKNGKTSTDAPLLP 405
Query: 313 LSHIRHRTVAVIGPNSDVTVTMIGNYAGIAC-GYTTPLQG-IGRYARTIHQQGCKDVACA 370
L + + V G ++D G C G+T QG GR T+ + V A
Sbjct: 406 LPK-KAPKILVAGSHAD--------NLGYQCGGWTIEWQGDTGR--TTVGTTILEAVKAA 454
Query: 371 DDQ----LFGAAIDA----SRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVS 422
D +F DA S I+ +G E + D L +P V V
Sbjct: 455 VDPSTVVVFAENPDAEFVKSGGFSYAIVAVGEHPYTETKG-DNLNLTIPEPGLSTVQAVC 513
Query: 423 MASKGPTILVLMSGGPIDVA--FAKNDPRIAAIIWAGYPGQAGGTAIADILFGTSNPGGK 480
+ T+L+ SG P+ V A +D +AA + PG G + D LFG G+
Sbjct: 514 GGVRCATVLI--SGRPVVVQPLLAASDALVAAWL----PGSE-GQGVTDALFGDFGFTGR 566
Query: 481 LPMTWYPQEYITNLPM 496
LP TW+ + + LPM
Sbjct: 567 LPRTWF--KSVDQLPM 580
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 36/139 (25%)
Query: 48 PIPQRVNDLIGRLSLQEKVKL---------------------LISGAAAVPRLGIKGYEW 86
P+ RV DL+GR++L EK+ L+SG +VPR G E
Sbjct: 11 PVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKGATAKE- 69
Query: 87 WSEALHGVSNVGPGTKFG-------------GDFPGATSFPQVITTASSFNATLWEAIGR 133
W + + G T+ G + GAT FP + ++ + L + IG
Sbjct: 70 WQDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYLVKRIGE 129
Query: 134 VSKQDIEDT-FDVPFRMCV 151
+ ++ T F C+
Sbjct: 130 ATALEVRATGIQYAFAPCI 148
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 169 VPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDC 228
VP ++ +R E NG IV+D ++ D HF EEA A++AG+D+
Sbjct: 292 VPATLSKKVMTGLLRQEMGFNGVIVTDALNMKAIAD--HFGQ--EEAVVMAVKAGVDIAL 347
Query: 229 GP--FLGLHTE-----------SAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQP 275
P L E AV+ G + E INN++ ++++++ GM+ S
Sbjct: 348 MPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDST 407
Query: 276 YGHLGPKDVCTPDHQELALEA--ARQGIVLLKNQGPSLPLSHIRHRTVAVIGPNSDVTVT 333
+ Q L E A + + +LKN+ +LP + + ++ P + T +
Sbjct: 408 KEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTAS 467
Query: 334 M 334
+
Sbjct: 468 I 468
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 169 VPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDC 228
VP ++ +R E NG IV++ ++ D HF EEA A++AG+D+
Sbjct: 296 VPATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIAD--HFGQ--EEAVVMAVKAGVDIAL 351
Query: 229 GP--FLGLHTE-----------SAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQP 275
P L E AV+ G + E INN++ ++++++ GM+ S
Sbjct: 352 MPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDST 411
Query: 276 YGHLGPKDVCTPDHQELALEA--ARQGIVLLKNQGPSLPLSHIRHRTVAVIGPNSDVTVT 333
+ Q L E A + + +LKN+ +LP + + ++ P + T +
Sbjct: 412 KEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTAS 471
Query: 334 M 334
+
Sbjct: 472 I 472
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 169 VPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDC 228
VP ++ +R E NG IV++ ++ D HF EEA A++AG+D+
Sbjct: 266 VPATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIAD--HFGQ--EEAVVMAVKAGVDIAL 321
Query: 229 GP--FLGLHTE-----------SAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQP 275
P L E AV+ G + E INN++ ++++++ GM+ S
Sbjct: 322 MPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDST 381
Query: 276 YGHLGPKDVCTPDHQELALEA--ARQGIVLLKNQGPSLPLSHIRHRTVAVIGPNSDVTVT 333
+ Q L E A + + +LKN+ +LP + + ++ P + T +
Sbjct: 382 KEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTAS 441
Query: 334 M 334
+
Sbjct: 442 I 442
>pdb|3TEV|A Chain A, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
pdb|3TEV|B Chain B, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
Length = 351
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 130 AIGRVSKQDIE-DTFDV-PFRMCVMEG-KVASVMCSYNQVNGV-PTCADPNILKRTIRGE 185
A+ RVSK E D ++ PFR + E + + Y+ ++ P P IL +R E
Sbjct: 193 ALPRVSKSRAELDAGELAPFRALLPETPAIXTAHIVYDALDAEHPATLSPRILTGLLREE 252
Query: 186 WRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDL 226
W +G IV+ DS G ++ EAA A+RAG DL
Sbjct: 253 WGYDGVIVT--DSXGXQAIDANYGRG--EAAVRALRAGADL 289
>pdb|2ZKR|RR Chain r, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 184
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 156 VASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEA 215
V S++ + QVN P + +RT R R+N Y+ S C + + + PEE
Sbjct: 109 VDSLVIEHIQVNKAP-----KMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEE 163
Query: 216 AA 217
A
Sbjct: 164 VA 165
>pdb|2HVQ|A Chain A, Structure Of Adenylated Full-length T4 Rna Ligase 2
Length = 335
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 245 LSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKD---VCTPDHQELALEAARQGI 301
LSE D N LV L + L + S G +GPKD V Q++ E +R+GI
Sbjct: 248 LSEAD--NKLVGILACYVTLNRVNNVISK--IGEIGPKDFGKVMGLTVQDILEETSREGI 303
Query: 302 VLLKNQGPSLPLSHIRHRTVAVIGP 326
L + PSL + V+ P
Sbjct: 304 TLTQADNPSLIKKELVKMVQDVLRP 328
>pdb|2HVR|A Chain A, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 3'-Deoxyribonucleotide
At The Nick
pdb|2HVR|B Chain B, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 3'-Deoxyribonucleotide
At The Nick
pdb|2HVS|A Chain A, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 2'-Deoxyribonucleotide
At The Nick
pdb|2HVS|B Chain B, Structure Of T4 Rna Ligase 2 With Nicked 5'-Adenylated
Nucleic Acid Duplex Containing A 2'-Deoxyribonucleotide
At The Nick
Length = 335
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 245 LSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKD---VCTPDHQELALEAARQGI 301
LSE D N LV L + L + S G +GPKD V Q++ E +R+GI
Sbjct: 248 LSEAD--NKLVGILACYVTLNRVNNVISK--IGEIGPKDFGKVMGLTVQDILEETSREGI 303
Query: 302 VLLKNQGPSLPLSHIRHRTVAVIGP 326
L + PSL + V+ P
Sbjct: 304 TLTQADNPSLIKKELVKMVQDVLRP 328
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 64 EKVKLLISGAAAVPRLGIKGYEWWSEALHGVSNVGPGTKF 103
EK +++++G A+ +G ++W + G + +GP T+F
Sbjct: 5 EKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRF 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,076,454
Number of Sequences: 62578
Number of extensions: 842313
Number of successful extensions: 1802
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1730
Number of HSP's gapped (non-prelim): 43
length of query: 677
length of database: 14,973,337
effective HSP length: 105
effective length of query: 572
effective length of database: 8,402,647
effective search space: 4806314084
effective search space used: 4806314084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)