Query 005782
Match_columns 677
No_of_seqs 395 out of 2017
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 13:40:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 2E-142 5E-147 1241.4 61.1 653 13-669 15-779 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 2E-121 4E-126 1070.2 55.3 565 46-666 31-758 (765)
3 COG1472 BglX Beta-glucosidase- 100.0 9.2E-42 2E-46 369.9 15.1 233 76-339 55-372 (397)
4 PF01915 Glyco_hydro_3_C: Glyc 100.0 6.9E-40 1.5E-44 333.3 13.6 217 301-533 1-227 (227)
5 PF00933 Glyco_hydro_3: Glycos 100.0 2.1E-37 4.5E-42 327.3 10.9 187 61-260 1-299 (299)
6 PRK05337 beta-hexosaminidase; 99.9 7.2E-27 1.5E-31 249.1 12.5 163 80-264 54-309 (337)
7 PF14310 Fn3-like: Fibronectin 99.8 2.3E-20 5E-25 154.5 6.1 69 593-662 1-71 (71)
8 PF07705 CARDB: CARDB; InterP 96.5 0.0092 2E-07 51.9 7.4 63 574-659 18-82 (101)
9 PF10633 NPCBM_assoc: NPCBM-as 95.5 0.044 9.6E-07 45.9 6.8 68 574-659 4-74 (78)
10 PF12690 BsuPI: Intracellular 94.0 0.33 7.2E-06 41.2 8.1 69 577-657 2-81 (82)
11 COG0486 ThdF Predicted GTPase 90.5 5.2 0.00011 44.5 14.0 96 150-264 60-171 (454)
12 PF14874 PapD-like: Flagellar- 90.4 1.8 4E-05 37.8 8.8 78 575-658 20-97 (102)
13 COG1470 Predicted membrane pro 82.3 4.8 0.0001 44.6 8.0 75 575-663 284-361 (513)
14 PRK13202 ureB urease subunit b 81.7 2.9 6.4E-05 36.7 4.9 51 577-631 21-83 (104)
15 PRK13203 ureB urease subunit b 81.5 2.9 6.4E-05 36.6 4.9 51 577-631 20-82 (102)
16 cd00407 Urease_beta Urease bet 81.5 3.1 6.7E-05 36.4 5.0 51 577-631 20-82 (101)
17 PF00699 Urease_beta: Urease b 80.7 3.3 7.3E-05 36.1 4.9 52 576-631 18-81 (100)
18 TIGR00192 urease_beta urease, 79.8 3.8 8.2E-05 35.9 5.0 51 577-631 20-82 (101)
19 COG1470 Predicted membrane pro 79.6 9.1 0.0002 42.5 9.0 81 575-671 397-484 (513)
20 PF13473 Cupredoxin_1: Cupredo 79.0 5.3 0.00012 35.2 6.0 51 578-660 44-94 (104)
21 COG0832 UreB Urea amidohydrola 75.1 4.5 9.8E-05 35.2 4.1 52 576-631 19-82 (106)
22 PRK13201 ureB urease subunit b 74.6 5.9 0.00013 36.3 4.9 51 577-631 20-82 (136)
23 PF07385 DUF1498: Protein of u 74.0 4.9 0.00011 40.4 4.7 63 582-659 111-184 (225)
24 PRK13205 ureB urease subunit b 73.3 6.4 0.00014 36.9 4.9 51 577-631 20-82 (162)
25 PRK13204 ureB urease subunit b 73.2 6.3 0.00014 37.0 4.9 51 577-631 43-105 (159)
26 PF05506 DUF756: Domain of unk 71.4 17 0.00036 31.1 7.0 47 578-634 21-67 (89)
27 PRK13198 ureB urease subunit b 70.6 7.9 0.00017 36.4 4.9 51 577-631 48-110 (158)
28 PF14796 AP3B1_C: Clathrin-ada 67.2 17 0.00037 34.3 6.5 55 575-634 85-140 (145)
29 PF00345 PapD_N: Pili and flag 66.8 12 0.00026 33.8 5.4 54 578-634 17-73 (122)
30 PF06280 DUF1034: Fn3-like dom 66.3 38 0.00082 30.2 8.5 59 576-634 9-80 (112)
31 PRK13192 bifunctional urease s 64.3 11 0.00024 37.3 4.7 51 577-631 129-191 (208)
32 PF06030 DUF916: Bacterial pro 63.8 24 0.00053 32.2 6.7 58 575-634 27-103 (121)
33 PF00927 Transglut_C: Transglu 60.0 15 0.00032 32.5 4.5 60 574-634 14-76 (107)
34 PRK13986 urease subunit alpha; 58.8 15 0.00033 36.7 4.7 51 577-631 125-187 (225)
35 PF09624 DUF2393: Protein of u 58.4 21 0.00045 33.6 5.6 61 574-634 61-133 (149)
36 PF04744 Monooxygenase_B: Mono 54.1 33 0.00071 37.2 6.5 56 574-633 262-334 (381)
37 cd00938 HisRS_RNA HisRS_RNA bi 53.0 32 0.00069 25.7 4.4 31 235-265 12-42 (45)
38 TIGR01759 MalateDH-SF1 malate 50.8 14 0.0003 39.8 3.3 58 380-441 75-134 (323)
39 PF05753 TRAP_beta: Translocon 50.6 78 0.0017 31.1 8.2 85 574-663 37-128 (181)
40 PF14016 DUF4232: Protein of u 45.7 64 0.0014 29.6 6.5 59 576-634 19-82 (131)
41 PF06165 Glyco_transf_36: Glyc 44.7 20 0.00044 32.0 2.9 57 522-600 31-88 (110)
42 COG1160 Predicted GTPases [Gen 44.7 56 0.0012 36.5 6.8 47 376-435 75-121 (444)
43 PF06858 NOG1: Nucleolar GTP-b 43.9 73 0.0016 25.2 5.4 24 411-434 31-55 (58)
44 PRK09918 putative fimbrial cha 43.7 68 0.0015 32.7 6.9 52 578-633 41-93 (230)
45 TIGR01756 LDH_protist lactate 43.1 18 0.0004 38.7 2.7 57 380-442 56-116 (313)
46 PF00056 Ldh_1_N: lactate/mala 40.5 8.8 0.00019 36.0 -0.2 54 381-441 66-123 (141)
47 TIGR00450 mnmE_trmE_thdF tRNA 39.8 1.5E+02 0.0033 33.3 9.6 97 149-264 49-161 (442)
48 PRK13556 azoreductase; Provisi 39.8 84 0.0018 31.3 6.8 39 374-423 79-117 (208)
49 cd03708 GTPBP_III Domain III o 39.5 1.9E+02 0.0042 24.0 8.1 76 576-659 5-82 (87)
50 PF07233 DUF1425: Protein of u 38.8 1.5E+02 0.0033 25.6 7.4 59 574-634 23-82 (94)
51 PRK13555 azoreductase; Provisi 38.6 79 0.0017 31.7 6.4 38 375-423 80-117 (208)
52 cd09030 DUF1425 Putative perip 38.2 2.2E+02 0.0049 24.7 8.5 58 575-634 32-90 (101)
53 cd00704 MDH Malate dehydrogena 35.5 33 0.00071 37.0 3.2 56 380-441 72-131 (323)
54 PRK05442 malate dehydrogenase; 35.5 26 0.00057 37.7 2.5 56 380-441 76-135 (326)
55 cd01338 MDH_choloroplast_like 35.4 33 0.00071 36.9 3.2 56 380-441 74-133 (322)
56 COG0039 Mdh Malate/lactate deh 34.8 36 0.00078 36.4 3.3 58 380-442 65-124 (313)
57 PF10087 DUF2325: Uncharacteri 34.7 1.1E+02 0.0023 26.5 5.9 40 378-432 42-81 (97)
58 cd00300 LDH_like L-lactate deh 34.6 28 0.0006 37.0 2.5 57 380-441 62-120 (300)
59 PLN00135 malate dehydrogenase 34.4 36 0.00077 36.4 3.3 57 380-441 54-113 (309)
60 PF08530 PepX_C: X-Pro dipepti 33.9 1.5E+02 0.0032 29.6 7.6 59 575-634 96-162 (218)
61 TIGR03096 nitroso_cyanin nitro 33.8 1.1E+02 0.0023 28.7 5.8 16 619-634 95-110 (135)
62 COG1361 S-layer domain [Cell e 33.5 1.1E+02 0.0024 34.9 7.3 58 576-634 168-226 (500)
63 TIGR01757 Malate-DH_plant mala 32.8 27 0.00058 38.6 2.0 57 380-442 116-176 (387)
64 PF06205 GT36_AF: Glycosyltran 32.6 30 0.00065 29.8 1.9 27 606-634 58-84 (90)
65 PRK15249 fimbrial chaperone pr 32.6 88 0.0019 32.4 5.7 54 578-633 45-103 (253)
66 TIGR01772 MDH_euk_gproteo mala 30.9 54 0.0012 35.1 4.0 56 380-441 63-121 (312)
67 PF09851 SHOCT: Short C-termin 30.5 1E+02 0.0022 21.0 3.8 25 234-258 6-30 (31)
68 COG1182 AcpD Acyl carrier prot 30.2 1.6E+02 0.0034 29.5 6.6 40 376-427 79-118 (202)
69 PRK15295 fimbrial assembly cha 29.9 1.3E+02 0.0028 30.7 6.3 54 578-633 36-90 (226)
70 TIGR01451 B_ant_repeat conserv 29.8 66 0.0014 24.7 3.2 23 574-597 11-33 (53)
71 cd01336 MDH_cytoplasmic_cytoso 29.8 45 0.00097 35.9 3.1 58 380-441 74-133 (325)
72 PRK05086 malate dehydrogenase; 29.6 47 0.001 35.5 3.2 56 380-441 65-123 (312)
73 PF01345 DUF11: Domain of unkn 29.3 60 0.0013 26.5 3.2 20 574-593 40-59 (76)
74 PRK10528 multifunctional acyl- 28.9 2.6E+02 0.0057 27.1 8.3 44 383-431 70-113 (191)
75 PF03808 Glyco_tran_WecB: Glyc 28.8 2.2E+02 0.0047 27.5 7.5 40 383-441 100-139 (172)
76 TIGR01758 MDH_euk_cyt malate d 28.8 46 0.001 35.8 3.0 56 380-441 71-130 (324)
77 PLN02602 lactate dehydrogenase 28.1 44 0.00095 36.4 2.7 56 381-441 102-159 (350)
78 TIGR01763 MalateDH_bact malate 27.2 46 0.001 35.5 2.6 54 382-442 67-124 (305)
79 PRK00170 azoreductase; Reviewe 27.2 1.5E+02 0.0032 28.9 6.2 39 374-423 76-114 (201)
80 cd01857 HSR1_MMR1 HSR1/MMR1. 27.2 1E+02 0.0022 28.3 4.7 18 376-393 3-20 (141)
81 TIGR03566 FMN_reduc_MsuE FMN r 27.2 1.6E+02 0.0034 28.4 6.2 53 373-436 57-111 (174)
82 PRK00286 xseA exodeoxyribonucl 26.9 3E+02 0.0066 30.8 9.3 59 372-442 178-238 (438)
83 PLN02303 urease 26.9 80 0.0017 38.2 4.7 51 577-631 150-212 (837)
84 PLN00112 malate dehydrogenase 26.5 40 0.00086 38.0 2.0 56 380-442 172-232 (444)
85 cd01337 MDH_glyoxysomal_mitoch 26.3 55 0.0012 35.0 3.0 55 380-441 64-122 (310)
86 cd05294 LDH-like_MDH_nadp A la 25.9 60 0.0013 34.6 3.3 56 381-441 69-126 (309)
87 PRK09926 putative chaperone pr 25.4 1.4E+02 0.0031 30.7 5.8 54 578-633 42-99 (246)
88 PRK13533 7-cyano-7-deazaguanin 25.2 88 0.0019 35.7 4.5 47 182-229 75-121 (487)
89 cd06533 Glyco_transf_WecG_TagA 25.1 3.8E+02 0.0082 25.8 8.4 41 382-441 97-137 (171)
90 TIGR03079 CH4_NH3mon_ox_B meth 25.0 1.7E+02 0.0036 31.9 6.2 57 574-634 281-354 (399)
91 PF00703 Glyco_hydro_2: Glycos 24.9 2.6E+02 0.0056 23.7 6.7 64 575-643 18-81 (110)
92 PF10662 PduV-EutP: Ethanolami 24.6 4.2E+02 0.009 25.0 8.2 21 374-394 53-73 (143)
93 PF00553 CBM_2: Cellulose bind 24.4 1.2E+02 0.0026 26.4 4.4 18 573-590 11-28 (101)
94 PRK15299 fimbrial chaperone pr 24.3 1.7E+02 0.0038 29.7 6.1 54 578-633 39-94 (227)
95 TIGR01771 L-LDH-NAD L-lactate 24.0 50 0.0011 35.1 2.2 55 380-441 60-118 (299)
96 PRK15188 fimbrial chaperone pr 24.0 1.6E+02 0.0036 30.0 5.8 51 578-634 44-98 (228)
97 PF11611 DUF4352: Domain of un 24.0 1.2E+02 0.0026 26.9 4.4 60 574-633 35-100 (123)
98 PRK15218 fimbrial chaperone pr 23.9 2.3E+02 0.005 28.8 6.9 54 578-633 35-92 (226)
99 PF11906 DUF3426: Protein of u 23.6 2.5E+02 0.0054 26.1 6.7 60 575-634 68-136 (149)
100 cd05291 HicDH_like L-2-hydroxy 23.4 57 0.0012 34.7 2.5 55 381-442 65-123 (306)
101 TIGR00237 xseA exodeoxyribonuc 23.1 4.2E+02 0.0092 29.7 9.4 58 373-442 173-233 (432)
102 PF02450 LCAT: Lecithin:choles 23.0 95 0.0021 34.3 4.2 61 415-475 107-175 (389)
103 PTZ00325 malate dehydrogenase; 22.9 63 0.0014 34.8 2.7 57 379-441 71-130 (321)
104 PF02401 LYTB: LytB protein; 22.4 1.4E+02 0.003 31.6 5.0 119 291-445 127-253 (281)
105 cd05290 LDH_3 A subgroup of L- 22.0 56 0.0012 34.9 2.0 57 380-441 64-124 (307)
106 PRK00066 ldh L-lactate dehydro 21.8 71 0.0015 34.2 2.8 55 380-441 69-127 (315)
107 PRK15253 putative fimbrial ass 21.7 2.1E+02 0.0045 29.5 6.1 54 578-633 50-107 (242)
108 PF07495 Y_Y_Y: Y_Y_Y domain; 21.2 64 0.0014 25.3 1.8 11 649-659 36-46 (66)
109 PF09373 PMBR: Pseudomurein-bi 21.1 1.3E+02 0.0028 20.8 3.0 25 242-266 2-26 (33)
110 PRK13211 N-acetylglucosamine-b 21.0 3.2E+02 0.007 31.1 7.8 61 574-659 326-386 (478)
111 PF03358 FMN_red: NADPH-depend 20.8 2E+02 0.0044 26.5 5.4 41 371-422 57-97 (152)
112 PHA00691 hypothetical protein 20.0 1.1E+02 0.0023 24.0 2.6 18 643-660 11-30 (68)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=2.2e-142 Score=1241.44 Aligned_cols=653 Identities=48% Similarity=0.904 Sum_probs=563.4
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhccCHHHHHHHhccCCCCCCCCCcccceecccccc
Q 005782 13 ILLSASSSGLAAREPFACDPKDATTRTLPFCQVSLPIPQRVNDLIGRLSLQEKVKLLISGAAAVPRLGIKGYEWWSEALH 92 (677)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~ll~~mTleEKv~ql~~~~~~~~rlgip~~~~~~d~~~ 92 (677)
+++++.....+..++.+|+. .....+||||+++++++|+++||++||||||++||.+.+.+++|||||.++||+|++|
T Consensus 15 ~~~~~~~~~~~~~~~~~c~~--~~~~~~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~~~~vpRlGIP~~~~~~d~~h 92 (779)
T PLN03080 15 LALGATFKAADAHPQFPCKP--PTFSAYPFCNASLPIPARARSLVSLLTLDEKIAQLSNTAAGVPRLGIPPYEWWSESLH 92 (779)
T ss_pred HhcchhcccccCCCCcCCCC--ccccCCCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCCCCCCCcCCCCccceeccccc
Confidence 33333333344467888963 4567799999999999999999999999999999999999999999999989999999
Q ss_pred ceeecCCCcccCC-CCCCcccccccccccccCCHHHHHHHhc--------------------------------------
Q 005782 93 GVSNVGPGTKFGG-DFPGATSFPQVITTASSFNATLWEAIGR-------------------------------------- 133 (677)
Q Consensus 93 G~~~~~~g~~~~~-~~~~~t~fP~~~~laat~d~~l~~~~g~-------------------------------------- 133 (677)
|++..++|.++.+ ...++|.||++|++|||||++|++++|+
T Consensus 93 Gv~~~~~g~~~~~g~~~~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~G~~~~aP~vdi~rdPrwGR~~Et 172 (779)
T PLN03080 93 GLADNGPGVSFNSGPVSAATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQAGLTFWAPNINIFRDPRWGRGQET 172 (779)
T ss_pred ccccCCCccccccCCCCCceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhccccccCcceeecccccccCCCcCccccC
Confidence 9988777777742 2457899999999999999999998775
Q ss_pred ----------------------------------------------------------------cCHHHHhccCCHHHHH
Q 005782 134 ----------------------------------------------------------------VSKQDIEDTFDVPFRM 149 (677)
Q Consensus 134 ----------------------------------------------------------------~~~~~l~e~~l~PF~~ 149 (677)
+++++|+|+||+||++
T Consensus 173 fGEDP~lv~~~a~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ 252 (779)
T PLN03080 173 PGEDPAVASAYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQPPFKS 252 (779)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCccccCCccccCccCccCHHHHHhhhhHHHHH
Confidence 3558999999999999
Q ss_pred HHHcCCcceEEeeccccCCcccccCHHHHHHHhhcccccCcEEEcCCcccccccccccccCCHHHHHHHHHHhCCCCCCc
Q 005782 150 CVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCG 229 (677)
Q Consensus 150 ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~~~ 229 (677)
||++|.+++||||||.+||+|||.|++||++ ||+||||+|+|||||++|..+...|+++.+.+|++++||+||+||+|.
T Consensus 253 ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~ 331 (779)
T PLN03080 253 CIQEGKASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADVLKAGMDINCG 331 (779)
T ss_pred HHHhcCCeEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhhcccccCCHHHHHHHHHHcCCCcccC
Confidence 9999988899999999999999999999986 999999999999999999999888888778899999999999999998
Q ss_pred cchHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCHHHHHHHHHHhhcceEEeecCCC
Q 005782 230 PFLGLHTESAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGIVLLKNQGP 309 (677)
Q Consensus 230 ~~~~~~l~~av~~g~i~~~~id~av~RIL~~k~~~Glf~~~p~~~~~~~~~~~~v~~~~~~~la~~~A~~sivLLKN~~~ 309 (677)
.++.+.|.+||++|+|+|++||+||+|||++|+++|+|+.++...+|..+....+++++|+++|+|+|++|||||||+++
T Consensus 332 ~~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLKN~~~ 411 (779)
T PLN03080 332 SYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKK 411 (779)
T ss_pred chhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEecCCC
Confidence 77778999999999999999999999999999999999954433345544456788999999999999999999999999
Q ss_pred CCCCCCCCCCeEEEECcCCCccccccccccccCCccCCHHHHHhhce-eEEEecCcCccCCCChhhHHHHHHHhhcCCEE
Q 005782 310 SLPLSHIRHRTVAVIGPNSDVTVTMIGNYAGIACGYTTPLQGIGRYA-RTIHQQGCKDVACADDQLFGAAIDASRQADAT 388 (677)
Q Consensus 310 ~LPL~~~~~~kIaviGp~a~~~~~~~g~~~~~~~~~~t~~~~l~~~~-~v~y~~g~~~~~~~~~~~~~~a~~~a~~aD~v 388 (677)
+|||++.+.+||+||||+|+....++|+|++.+++.+|++++|+++. .+.|..||....+.+...+++|+++|++||+|
T Consensus 412 ~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~v 491 (779)
T PLN03080 412 FLPLNKSEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFV 491 (779)
T ss_pred CCCCCCCCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhccCCEE
Confidence 99998765679999999999988888889988888999999999975 57899998655444566789999999999999
Q ss_pred EEEecCCCcccccccccCCCCCCHHHHHHHHHHHhhCCCCEEEEEecCceeecccccCCCCccEEEEccCCCchhHHHHH
Q 005782 389 ILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVAFAKNDPRIAAIIWAGYPGQAGGTAIA 468 (677)
Q Consensus 389 Iv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvVl~~g~P~~l~~~~~~~~v~AiL~a~~~G~e~g~AiA 468 (677)
||++|.+...++|+.||.+|.||+.|.+||++|++++++|||||+++|+|++|+|+.+.++++|||++|||||++|+|+|
T Consensus 492 Iv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqegG~AiA 571 (779)
T PLN03080 492 VVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVGGQALA 571 (779)
T ss_pred EEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccchhhhH
Confidence 99999999899999999999999999999999998777899999999999999998766789999999999999999999
Q ss_pred HHHcCCCCCCcccccccccccccCCCCcccCCCCCCCCCCCCCCcccccCCCCcccccccccccCceeecccCCceeecc
Q 005782 469 DILFGTSNPGGKLPMTWYPQEYITNLPMTEMAMRPSQSKRYPGRTYRFYKGPVVYPFGHGMSYTNFVHTVANAPTVVAVP 548 (677)
Q Consensus 469 dvL~G~~nPsGkLPvT~~p~~~~~~~P~~~~~~~~~~~~~~~~~~Yr~~~~~~lypFG~GLSYT~F~ys~~~~~~~~~~~ 548 (677)
|||||++|||||||+||||+++ .|+|++++++++++..+|++++||||+.+|+||||||||||||+|++++++..+.+.
T Consensus 572 dvLfG~vnPsGkLPvT~~p~~~-~~~P~~~~~~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~~~~~~~~~ 650 (779)
T PLN03080 572 EIIFGDYNPGGRLPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLS 650 (779)
T ss_pred HHHcCCCCCCCcCeeeeccccc-ccCCccccCcccccccCCCCCCceeCCCCcceeccCCCccceeEecccccccccccc
Confidence 9999999999999999988887 579999888887777789999999999999999999999999999998754321111
Q ss_pred CCC--C-CCccccccccc---ccccc-cccCCCeeEEEEEEEEecCCCCcceeEEEeecCCCC-CCCccccccccccccc
Q 005782 549 LDG--R-HGSINATISGK---AIKVT-HAKCNRLTLGVQVDVKNVGSKDGAHTLLVFSTPPAG-HWAPHKQLVAFEKVHV 620 (677)
Q Consensus 549 ~~~--~-~~~~~~~~~~~---~~~~~-~~~~~~~~~~v~v~V~NtG~~~G~eVvQlYv~~~~~-~~~P~k~L~gF~kv~L 620 (677)
... . ........... ..+.. ...|+...++|+|+|||||+++|+||||||+++|.+ ..+|+|||+||+||+|
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L 730 (779)
T PLN03080 651 RSSVQDSISRKPLLQRRDELDYVQIEDIASCESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT 730 (779)
T ss_pred ccccccccccccccccccccccccccccccCCCceEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee
Confidence 100 0 00000000000 00000 011222269999999999999999999999999876 5789999999999999
Q ss_pred CCCCeEEEEEEeccCCCeeEEcCCCcEEeeCeEEEEEEeCCCceEEEEE
Q 005782 621 PAGAQQRVGINIHVCKYLSVVDRSGTRRIPLGEHNIHIGGTKHSVSLHA 669 (677)
Q Consensus 621 ~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G~y~i~vG~ss~~~~~~~ 669 (677)
+|||+++|+|+|+++++|++||++++|++|+|+|+|+||+++++++|++
T Consensus 731 ~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~~ 779 (779)
T PLN03080 731 ASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779 (779)
T ss_pred CCCCEEEEEEEeCchHHceEEcCCCcEEEeCccEEEEEeCCccceEEeC
Confidence 9999999999999646899999999999999999999999999999864
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=1.7e-121 Score=1070.15 Aligned_cols=565 Identities=28% Similarity=0.481 Sum_probs=485.7
Q ss_pred CCCHHHHHHHHHhccCHHHHHHHhccC-----C--------------C-------------------CCCCCCcccceec
Q 005782 46 SLPIPQRVNDLIGRLSLQEKVKLLISG-----A--------------A-------------------AVPRLGIKGYEWW 87 (677)
Q Consensus 46 ~~~~~~rv~~ll~~mTleEKv~ql~~~-----~--------------~-------------------~~~rlgip~~~~~ 87 (677)
+.+.++|+++||++||||||++||... . . ..+|+|||++ ++
T Consensus 31 ~~~~~~~v~~ll~~MtleEKvgQl~~~~~~~~~~~~~~~~~i~~~~vGgv~n~~~~~~~~~lq~~~~~~~~~giP~l-i~ 109 (765)
T PRK15098 31 PEARDAFVTDLLKKMTLDEKIGQLRLISVGPDNPKEAIREMIKAGQVGAIFNTVTRQDIRAMQDQVMQLSRLKIPLF-FA 109 (765)
T ss_pred CcCHHHHHHHHHHcCCHHHHHhhhcccccCCCCchHHHHHHHHhCCcceEEcCcCHHHHHHHHHHHhhCCCCCCCee-EE
Confidence 347899999999999999999999741 0 0 1368899998 78
Q ss_pred cccccceeecCCCcccCCCCCCcccccccccccccCCHHHHHHHhc----------------------------------
Q 005782 88 SEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGR---------------------------------- 133 (677)
Q Consensus 88 ~d~~~G~~~~~~g~~~~~~~~~~t~fP~~~~laat~d~~l~~~~g~---------------------------------- 133 (677)
.|++||. .|.||+++++|||||++|++++|+
T Consensus 110 ~D~e~G~---------------~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~Gin~~laPv~Dv~r~p~~gr~~rsf 174 (765)
T PRK15098 110 YDVVHGQ---------------RTVFPISLGLASSWDLDAVATVGRVSAYEAADDGLNMTWAPMVDISRDPRWGRASEGF 174 (765)
T ss_pred EeCCCCc---------------cccCChHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCEEeeCcccccCCCCccccccCc
Confidence 9999985 489999999999999999999886
Q ss_pred ----------------------------------------------------cCHHHHhccCCHHHHHHHHcCCcceEEe
Q 005782 134 ----------------------------------------------------VSKQDIEDTFDVPFRMCVMEGKVASVMC 161 (677)
Q Consensus 134 ----------------------------------------------------~~~~~l~e~~l~PF~~ai~~g~~~~vM~ 161 (677)
+++++|+|+||+||+++|++| +++|||
T Consensus 175 geDP~lv~~~~~a~v~GlQ~~~~~~~~gV~a~~KHFpG~g~~~~~~~~~~~~~~~~~l~e~~l~PF~~ai~ag-~~~VM~ 253 (765)
T PRK15098 175 GEDTYLTSIMGKTMVKAMQGKSPADRYSVMTSVKHFALYGAVEGGRDYNTVDMSPQRMFNDYLPPYKAGLDAG-SGGVMV 253 (765)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCCCCEEEECcEEeCCCCcccCccCccCcCCHHHHHHHHHHHHHHHHHhC-CCEEEe
Confidence 789999999999999999988 569999
Q ss_pred eccccCCcccccCHHHHHHHhhcccccCcEEEcCCcccccccccccccCCHHHHHHHHHHhCCCCCCccc-hHHHHHHHH
Q 005782 162 SYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPF-LGLHTESAV 240 (677)
Q Consensus 162 sy~~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~-~~~~l~~av 240 (677)
|||.+||+|||.|+++|++|||+||||+|+|||||++|..+.. |++..+..|++++|++||+||+|.+. +.+.|.++|
T Consensus 254 sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~~~~~~~~ea~~~Al~AG~Dl~m~~~~~~~~l~~av 332 (765)
T PRK15098 254 ALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK-HGVAADPEDAVRLALKSGIDMSMSDEYYSKYLPGLV 332 (765)
T ss_pred cccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh-cccCCCHHHHHHHHHHcCCCcccCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999998864 66767889999999999999999754 345799999
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC-------CCCccCCHHHHHHHHHHhhcceEEeecCCCCCCC
Q 005782 241 QRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHL-------GPKDVCTPDHQELALEAARQGIVLLKNQGPSLPL 313 (677)
Q Consensus 241 ~~g~i~~~~id~av~RIL~~k~~~Glf~~~p~~~~~~~~-------~~~~v~~~~~~~la~~~A~~sivLLKN~~~~LPL 313 (677)
++|+|++++||+||+|||++|+++|+|+ +| |... ....+.+++|+++++++|++|||||||++++|||
T Consensus 333 ~~G~i~~~~id~av~RIL~~k~~~glf~-~p----~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~sivLLKN~~~~LPL 407 (765)
T PRK15098 333 KSGKVTMAELDDAVRHVLNVKYDMGLFN-DP----YSHLGPKESDPVDTNAESRLHRKEAREVARESLVLLKNRLETLPL 407 (765)
T ss_pred HcCcCCHHHHHHHHHHHHHHHHHhCCCC-CC----ccccccccccccccccCCHHHHHHHHHHHHhcEEEEecCCCCCCC
Confidence 9999999999999999999999999998 33 2211 0122457899999999999999999999999999
Q ss_pred CCCCCCeEEEECcCCCcccccccccc--ccCCccCCHHHHHhhce----eEEEecCcCccC-------------------
Q 005782 314 SHIRHRTVAVIGPNSDVTVTMIGNYA--GIACGYTTPLQGIGRYA----RTIHQQGCKDVA------------------- 368 (677)
Q Consensus 314 ~~~~~~kIaviGp~a~~~~~~~g~~~--~~~~~~~t~~~~l~~~~----~v~y~~g~~~~~------------------- 368 (677)
++. +||+||||+++....+.|+|+ +.+.+.+|+++||++.. .+.|..||....
T Consensus 408 ~~~--~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~~~~~~~~~~~~~~~~ 485 (765)
T PRK15098 408 KKS--GTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGIIDFLNQYEEAVKVDP 485 (765)
T ss_pred CCC--CEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCceEEEecccccccCcccchhhhcccccccccc
Confidence 853 699999999988765667764 56778899999999964 588998874211
Q ss_pred CCChhhHHHHHHHhhcCCEEEEEecCCCcccccccccCCCCCCHHHHHHHHHHHhhCCCCEEEEEecCceeecccccCCC
Q 005782 369 CADDQLFGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVAFAKNDP 448 (677)
Q Consensus 369 ~~~~~~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvVl~~g~P~~l~~~~~~~ 448 (677)
......+++|+++|++||+|||++|.+...++|+.||.+|.||+.|.+||++|++. ++|+|||+++|+||+|+|+. +
T Consensus 486 ~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~-~~~vVvVl~~g~P~~l~~~~--~ 562 (765)
T PRK15098 486 RSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKAT-GKPLVLVLMNGRPLALVKED--Q 562 (765)
T ss_pred ccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHh-CcCEEEEEeCCceeeccchh--h
Confidence 01234688999999999999999999988899999999999999999999999875 57899999999999999874 4
Q ss_pred CccEEEEccCCCchhHHHHHHHHcCCCCCCcccccccccccccCCCCcccCCCCCC---CCCCCCCCcccccCC--CCcc
Q 005782 449 RIAAIIWAGYPGQAGGTAIADILFGTSNPGGKLPMTWYPQEYITNLPMTEMAMRPS---QSKRYPGRTYRFYKG--PVVY 523 (677)
Q Consensus 449 ~v~AiL~a~~~G~e~g~AiAdvL~G~~nPsGkLPvT~~p~~~~~~~P~~~~~~~~~---~~~~~~~~~Yr~~~~--~~ly 523 (677)
+++|||++|+||+++|+|+|+||||++|||||||+|| |++. +|+|.+++..... .+..+.+.+||||+. +|+|
T Consensus 563 ~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~-p~~~-~~~P~~~~~~~~~~~y~e~~~~~y~yry~d~~~~ply 640 (765)
T PRK15098 563 QADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSF-PRSV-GQIPVYYNHLNTGRPYNPDKPNKYTSRYFDEANGPLY 640 (765)
T ss_pred cCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccce-eCCC-CcCccccccCCCCCccccCcccccccceeccCCCccc
Confidence 8999999999999999999999999999999999998 6664 6789765332111 111112235899986 4999
Q ss_pred cccccccccCceeecccCCceeeccCCCCCCcccccccccccccccccCCCeeEEEEEEEEecCCCCcceeEEEeecCCC
Q 005782 524 PFGHGMSYTNFVHTVANAPTVVAVPLDGRHGSINATISGKAIKVTHAKCNRLTLGVQVDVKNVGSKDGAHTLLVFSTPPA 603 (677)
Q Consensus 524 pFG~GLSYT~F~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~V~NtG~~~G~eVvQlYv~~~~ 603 (677)
|||||||||+|+|+++++.... . ..++.++|+|+|||||+++|+||||||+++|.
T Consensus 641 pFG~GLSYT~F~ys~l~v~~~~---~----------------------~~~~~i~v~v~V~NtG~~~G~EVvQlYv~~~~ 695 (765)
T PRK15098 641 PFGYGLSYTTFTVSDVKLSSPT---M----------------------KRDGKVTASVTVTNTGKREGATVVQLYLQDVT 695 (765)
T ss_pred cccCCCCCccEEeeccEecccc---c----------------------cCCCeEEEEEEEEECCCCCccEEEEEeccCCC
Confidence 9999999999999999843210 0 01257999999999999999999999999988
Q ss_pred C-CCCcccccccccccccCCCCeEEEEEEeccCCCeeEEcCCCcEEeeCeEEEEEEeCCCceEE
Q 005782 604 G-HWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSGTRRIPLGEHNIHIGGTKHSVS 666 (677)
Q Consensus 604 ~-~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G~y~i~vG~ss~~~~ 666 (677)
+ ..+|.|||+||+||+|+|||+++|+|+|+. ++|++||.+++|++|+|+|+|+||+||++++
T Consensus 696 ~~~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~-~~L~~~d~~~~~~~e~G~y~v~vG~ss~d~~ 758 (765)
T PRK15098 696 ASMSRPVKELKGFEKIMLKPGETQTVSFPIDI-EALKFWNQQMKYVAEPGKFNVFIGLDSARVK 758 (765)
T ss_pred CCCCCHHHhccCceeEeECCCCeEEEEEeecH-HHhceECCCCcEEEeCceEEEEEECCCCccc
Confidence 7 578999999999999999999999999999 7999999999999999999999999999864
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.2e-42 Score=369.89 Aligned_cols=233 Identities=29% Similarity=0.490 Sum_probs=199.8
Q ss_pred CCCCCcccceeccccccceeecCCCcccCCCCCCcccccccccccccCCHHHHHHHhc----------------------
Q 005782 76 VPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFNATLWEAIGR---------------------- 133 (677)
Q Consensus 76 ~~rlgip~~~~~~d~~~G~~~~~~g~~~~~~~~~~t~fP~~~~laat~d~~l~~~~g~---------------------- 133 (677)
..|++||.+ +..|.++|..... . .++|.||+++++|||||+++++++|+
T Consensus 55 ~~r~~ipll-i~~D~egG~v~r~-----~---~~~t~fP~~~alaa~~~~~la~~~g~~~A~Elra~Gin~~fAPvlDv~ 125 (397)
T COG1472 55 EARLGIPLL-IAIDQEGGRVQRL-----R---EGFTVFPAALALAATWDPELARKVGRVIAKELRALGINLDFAPVLDVA 125 (397)
T ss_pred hhccCCCeE-EEEecCCCeeeec-----c---CCCCcCChhhhhhhcCCHHHHHHHHHHHHHHHHHcCCCccccceeecc
Confidence 358999998 7899999976431 1 15899999999999999999999997
Q ss_pred -----------------------------------------------------------cCHHHHhccCCHHHHHHHHcC
Q 005782 134 -----------------------------------------------------------VSKQDIEDTFDVPFRMCVMEG 154 (677)
Q Consensus 134 -----------------------------------------------------------~~~~~l~e~~l~PF~~ai~~g 154 (677)
++++.|+|+|++||+.+++.+
T Consensus 126 ~~p~~~ri~ersfgeDP~lv~~l~~a~i~Glq~~gv~at~KHFpGhG~~~~dsh~~~~~v~~~~L~e~~~~~f~~~~~~~ 205 (397)
T COG1472 126 RDPRWGRIGERSFGEDPELVALLAAAFIKGLQGAGVAATIKHFPGHGAVEGDSHYGLLPIDPRALRELYLPPFQPAIALG 205 (397)
T ss_pred cCCCcCccccccCCCCHHHHHHHHHHHHHHHhhCCceeeeccccCCCCCcCCcccccCCCChHHHHHhhccchHHHHHhc
Confidence 899999999999999999999
Q ss_pred C--cceEEeeccccCCcccccCHHHHHHHhhcccccCcEEEcCCcccccccccccccCCHHHHHHHHHHhCCCCCCccc-
Q 005782 155 K--VASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPF- 231 (677)
Q Consensus 155 ~--~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~- 231 (677)
. ++++|++||++||.|||.|+++|++|||++|||+|+|||||++|+++...|+ +..+.+..+++|||||+|.+.
T Consensus 206 ~~~~mtahv~y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~g---~~~d~~~~al~AG~Di~l~~~~ 282 (397)
T COG1472 206 DDAAMTAHVAYPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAHG---SAADRAEAALKAGVDIVLVCNE 282 (397)
T ss_pred cccceEEeeeccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHHhcc---CHHHHHHHHHhcCCCEEecCCc
Confidence 6 7899999999999999999999999999999999999999999998765443 456777789999999998533
Q ss_pred -hHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCHHHHHHHHHHhhcceEEeecCCCC
Q 005782 232 -LGLHTESAVQRGLLSEIDINNALVNTLTVQMRLGMFDGEPSSQPYGHLGPKDVCTPDHQELALEAARQGIVLLKNQGPS 310 (677)
Q Consensus 232 -~~~~l~~av~~g~i~~~~id~av~RIL~~k~~~Glf~~~p~~~~~~~~~~~~v~~~~~~~la~~~A~~sivLLKN~~~~ 310 (677)
+...+..+...+ ++++++|++++|||++|+++|+|+ +| |.. +|++++++++++|+|||||+..+
T Consensus 283 ~~~~~~~~~~~~~-~~~~~i~~~v~Ril~~k~~~~~f~-~~----~~~---------~~~~~a~~~~~~~~~ll~n~~~~ 347 (397)
T COG1472 283 LYEAYLVVLELVG-LSEARLDDAVRRILRVKFKLGLFE-NP----YSS---------EHRALAREAARESIVLLKNDGGL 347 (397)
T ss_pred hhHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhcccc-CC----Cch---------hhHHHHHHHHHHHHHHHHhccCC
Confidence 223334444445 999999999999999999999999 43 221 89999999999999999999889
Q ss_pred CCCCCCCCCeEEEECcCCCcccccccccc
Q 005782 311 LPLSHIRHRTVAVIGPNSDVTVTMIGNYA 339 (677)
Q Consensus 311 LPL~~~~~~kIaviGp~a~~~~~~~g~~~ 339 (677)
|||+ .+.++|+++||.++.. . |+|+
T Consensus 348 ~p~~-~~~~~i~v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 348 LPLK-KSAKRIAVIGPYADDG-D--GGWS 372 (397)
T ss_pred Cccc-cccCceEEEccccccC-C--CCee
Confidence 9999 4457999999999987 4 6665
No 4
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=6.9e-40 Score=333.30 Aligned_cols=217 Identities=42% Similarity=0.628 Sum_probs=154.4
Q ss_pred eEEeecCCCCCCCCCCCCCeEEEECcCCCcccccccccc-ccCCccCCHHHHHhhcee---EEEecCcCccCCCChhhHH
Q 005782 301 IVLLKNQGPSLPLSHIRHRTVAVIGPNSDVTVTMIGNYA-GIACGYTTPLQGIGRYAR---TIHQQGCKDVACADDQLFG 376 (677)
Q Consensus 301 ivLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~g~~~-~~~~~~~t~~~~l~~~~~---v~y~~g~~~~~~~~~~~~~ 376 (677)
||||||++++|||++.+. ||+|+|+.+.....+++++. ..+.+..+++++|+++.. +.+..++. ...+...++
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~ 77 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGGD--AVDDDEGID 77 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCCC--CCCCCSCHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeecc--ccccccchH
Confidence 799999999999998643 99999999998766665554 345677899999999862 33322221 112456788
Q ss_pred HHHHHhhcCCEEEEEecCCC------cccccccccCCCCCCHHHHHHHHHHHhhCCCCEEEEEecCceeecccccCCCCc
Q 005782 377 AAIDASRQADATILVMGLDQ------SIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVAFAKNDPRI 450 (677)
Q Consensus 377 ~a~~~a~~aD~vIv~vg~~~------~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvVl~~g~P~~l~~~~~~~~v 450 (677)
++++.++++|+|||++|... ..++| .||.++.||..|.+||+++++.+ +|+|||+++++||++.++. +++
T Consensus 78 ~~~~~~~~aD~vIv~~~~~~~e~~~~~~~~~-~~~~~~~l~~~q~~li~~v~~~~-~~~Ivvv~~~~P~~l~~~~--~~~ 153 (227)
T PF01915_consen 78 EAVAAAKEADVVIVFVGRPSGEGNDNNTEGE-SDRSDLALPANQQELIKAVAAAG-KKVIVVVNSGNPYDLDPWE--DNV 153 (227)
T ss_dssp HHHHHHHCSSEEEEEEETTSBCCCSS-EETT-GSCSSTBCCCHHHHHHHHHHHHH-SCEEEEEE-SSGGCGHCCH--HC-
T ss_pred HHHHHhhcCCEEEEecccccccccccccccc-CCcccccchhhHHHHHHHHHHhc-CCeEEEEecCCccccHHHH--hhh
Confidence 99999999999999999221 11223 69999999999999999999865 6789999999999997765 389
Q ss_pred cEEEEccCCCchhHHHHHHHHcCCCCCCcccccccccccccCCCCcccCCCCCCCCCCCCCCcccccCCCCccccccccc
Q 005782 451 AAIIWAGYPGQAGGTAIADILFGTSNPGGKLPMTWYPQEYITNLPMTEMAMRPSQSKRYPGRTYRFYKGPVVYPFGHGMS 530 (677)
Q Consensus 451 ~AiL~a~~~G~e~g~AiAdvL~G~~nPsGkLPvT~~p~~~~~~~P~~~~~~~~~~~~~~~~~~Yr~~~~~~lypFG~GLS 530 (677)
+|||++|++|+++++|+||||||++|||||||+|| |++. +++|.++... ..++.|++....++||||||||
T Consensus 154 ~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~-p~~~-~~~p~~~~~~-------~~~~~~~~~~~~~~~~fG~GLs 224 (227)
T PF01915_consen 154 DAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTI-PKSM-EDIPAYYNYG-------MYGRTYDYDSGPPLYPFGYGLS 224 (227)
T ss_dssp SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-B-ESSG-GGTTTTTTTS--------THCCHHHHTTSESB-TT--B-
T ss_pred ceEeeccccchHHHHHHHHHHcCCCCCCCCcceec-cCCh-hhCCCccccc-------ccCcccccCCCCccCcCCCCCE
Confidence 99999999999999999999999999999999998 5654 5688643211 1234577778889999999999
Q ss_pred ccC
Q 005782 531 YTN 533 (677)
Q Consensus 531 YT~ 533 (677)
||+
T Consensus 225 yt~ 227 (227)
T PF01915_consen 225 YTY 227 (227)
T ss_dssp TT-
T ss_pred eeC
Confidence 996
No 5
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=2.1e-37 Score=327.34 Aligned_cols=187 Identities=28% Similarity=0.403 Sum_probs=149.7
Q ss_pred CHHHHHHHhcc----------------------------CCCCCCCCCcccceeccccccceeecCCCcccCCCCCCccc
Q 005782 61 SLQEKVKLLIS----------------------------GAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGDFPGATS 112 (677)
Q Consensus 61 TleEKv~ql~~----------------------------~~~~~~rlgip~~~~~~d~~~G~~~~~~g~~~~~~~~~~t~ 112 (677)
|||||++||.. .....+|+|||++ +..|+++|+... .. .++|.
T Consensus 1 TleeKigQl~~~~~~~i~~~~vGgv~~~~~~~~~~~~~~~~~~~~~~~iP~~-i~~D~egG~~~~-----~~---~~~t~ 71 (299)
T PF00933_consen 1 TLEEKIGQLFMELKELIKEYHVGGVILPEQLKQLTQSLQAISEQSRLGIPLL-IAIDQEGGIVQR-----LG---GGFTA 71 (299)
T ss_dssp -HHHHHHHTEEHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHCCGCGTCT-E-EEEEETTSTTTS-----TT---TTS--
T ss_pred CHHHHHHHHHHHHHHHHhcCCccEEEcHHHHHHHHHHHHHHhhccccCCCeE-EEEcCCCceEec-----CC---CcCcc
Confidence 89999999982 1234679999998 789999997532 11 12699
Q ss_pred ccccccccccCCHHHHHHHhc-----------------------------------------------------------
Q 005782 113 FPQVITTASSFNATLWEAIGR----------------------------------------------------------- 133 (677)
Q Consensus 113 fP~~~~laat~d~~l~~~~g~----------------------------------------------------------- 133 (677)
||+++++|||||+++++++|.
T Consensus 72 ~P~~~~l~at~d~~~a~~~g~~~a~el~~~Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~q~~gv~~ 151 (299)
T PF00933_consen 72 FPSPMALAATWDPELAYEVGRIIARELRALGINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGLQGAGVAA 151 (299)
T ss_dssp -S-HHHHHHHTCHHHHHHHHHHHHHHHHHTT-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHHHCTTSEE
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHHHhhhccccccceeeeeeccccccccccchhHHHHHHHHHHHhcccccccccc
Confidence 999999999999999999986
Q ss_pred ---------------------cCHHHHhccCCHHHHHHHHcCCcceEEeeccccCCcccccCHHHHHHHhhcccccCcEE
Q 005782 134 ---------------------VSKQDIEDTFDVPFRMCVMEGKVASVMCSYNQVNGVPTCADPNILKRTIRGEWRLNGYI 192 (677)
Q Consensus 134 ---------------------~~~~~l~e~~l~PF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gF~G~V 192 (677)
+++++|+|.||+||+.+|+++.+.+||+||+.+|++|+|+|+.+|+++||+||||+|+|
T Consensus 152 ~~KHFpG~~~~d~~~~~~~~~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~id~~pas~s~~~l~~lLR~~lgf~G~v 231 (299)
T PF00933_consen 152 TAKHFPGHGAQDSHRDLPSVDVSERELREIDLPPFRAAIKDAGADAVMTSYPAIDGTPASLSPKILTDLLRNELGFDGVV 231 (299)
T ss_dssp EEEEETTGGCSCTTTTTEEEE--HHHHHHTTSHHHHHHHHHTT-SEEEE-STCCTTEEGGG-HHHHCCCCCCCS---SEE
T ss_pred cccccccccccccccccceecCCcccccchhcccchhcccccccceeeeeccccCCccchhhhccchhhCcCcccCCCeE
Confidence 78999999999999999944446799999999999999999999999999999999999
Q ss_pred EcCCcccccccccccccCCHHHHHHHHHHhCCCCCCccch----HHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 005782 193 VSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCGPFL----GLHTESAVQRGLLSEIDINNALVNTLTV 260 (677)
Q Consensus 193 vSD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~~----~~~l~~av~~g~i~~~~id~av~RIL~~ 260 (677)
||||++|+++...+ +..+++++||+||+||+|.+.. .+.|.++|++|.+++++||+||+|||++
T Consensus 232 iSD~~~m~~~~~~~----~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~~~ld~av~RIl~~ 299 (299)
T PF00933_consen 232 ISDDLEMGALSSNY----SIEEAAVRALNAGCDMLLVCNDPDDDIDALVEAVESGRISEERLDEAVRRILRL 299 (299)
T ss_dssp EESTTTSHHHHCCT----THHHHHHHHHHHT-SBEESSSSHHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHH
T ss_pred ecccchHHHHHhcc----ccchHHHHHHhCccCeeCCCCchhHHHHHHHHHHHcCCCCHHHHHHHHHHHhcC
Confidence 99999999987643 3679999999999999987432 4789999999999999999999999985
No 6
>PRK05337 beta-hexosaminidase; Provisional
Probab=99.94 E-value=7.2e-27 Score=249.08 Aligned_cols=163 Identities=21% Similarity=0.166 Sum_probs=135.8
Q ss_pred CcccceeccccccceeecCCCcccCCCCCCcccccccccccccCC------HHHHHHHhc--------------------
Q 005782 80 GIKGYEWWSEALHGVSNVGPGTKFGGDFPGATSFPQVITTASSFN------ATLWEAIGR-------------------- 133 (677)
Q Consensus 80 gip~~~~~~d~~~G~~~~~~g~~~~~~~~~~t~fP~~~~laat~d------~~l~~~~g~-------------------- 133 (677)
++|++ +..|.++|... |+ ..++|.||+++++|+||| ++|++++|.
T Consensus 54 ~~pll-i~iD~EgG~v~-----rl---~~~~t~~P~~~~laat~d~~~~~~~~la~~~g~~~a~Elra~Gin~~~aPvlD 124 (337)
T PRK05337 54 RPPLL-IAVDQEGGRVQ-----RF---REGFTRLPAMQSFGALWDRDPLEALKLAEEAGWLMAAELRACGIDLSFAPVLD 124 (337)
T ss_pred CCCCE-EEEecCCCEee-----ec---CCCCCCCCCHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHhCCCccccCccC
Confidence 57888 78999998642 11 235899999999999999 899999875
Q ss_pred -------------------------------------------------------------cCHHHHhccCCHHHHHHHH
Q 005782 134 -------------------------------------------------------------VSKQDIEDTFDVPFRMCVM 152 (677)
Q Consensus 134 -------------------------------------------------------------~~~~~l~e~~l~PF~~ai~ 152 (677)
.+.++|++.||+||+.+|+
T Consensus 125 v~~~~~~ig~RsfgeDp~lv~~~a~a~i~Glq~~gv~~~~KHFpG~G~~~~dsh~~~~~~~~~~~el~~~~l~PF~~ai~ 204 (337)
T PRK05337 125 LDGISAVIGDRAFHRDPQVVAALASAFIDGMHAAGMAATGKHFPGHGAVEADSHVETPVDERPLEEIRAEDMAPFRALIA 204 (337)
T ss_pred CCCCCCeeeccCCCCCHHHHHHHHHHHHHHHHHCCCEEEecccCCCCCCcCCCCCCCCCCCCCHHHHHhhhHHHHHHHHh
Confidence 3556888899999999999
Q ss_pred cCCcceEEee---ccccCCcccccCHHHHHHHhhcccccCcEEEcCCcccccccccccccCCHHHHHHHHHHhCCCCCCc
Q 005782 153 EGKVASVMCS---YNQVNGVPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCG 229 (677)
Q Consensus 153 ~g~~~~vM~s---y~~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~~~ 229 (677)
+| +.+|||| |+.+|+.|||+|+++|++|||+||||+|+|||||++|+++. ...+..+++++|++||+||+|.
T Consensus 205 ~g-~~~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~----~~~~~~~~~~~al~AG~Dl~l~ 279 (337)
T PRK05337 205 AG-LDAVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAA----VAGDYAERAQAALDAGCDMVLV 279 (337)
T ss_pred cC-CCEEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhh----hcCCHHHHHHHHHHcCCCEEee
Confidence 98 6799999 99999999999999999999999999999999999998643 2347789999999999999875
Q ss_pred cc---hHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q 005782 230 PF---LGLHTESAVQRGLLSEIDINNALVNTLTVQMRL 264 (677)
Q Consensus 230 ~~---~~~~l~~av~~g~i~~~~id~av~RIL~~k~~~ 264 (677)
+. ....+.+++.+ +.+.+|+++++.+.
T Consensus 280 ~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~ 309 (337)
T PRK05337 280 CNNRDGAVSVLDNLSP--------PISAERLTRLYGRG 309 (337)
T ss_pred CCCHHHHHHHHHHHHh--------hccHHHHHHHhccc
Confidence 32 33556666654 77888999888763
No 7
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=99.81 E-value=2.3e-20 Score=154.46 Aligned_cols=69 Identities=25% Similarity=0.435 Sum_probs=59.4
Q ss_pred eeEEEeecCCCC-CCCcccccccccccccCCCCeEEEEEEeccCCCeeEEcCC-CcEEeeCeEEEEEEeCCC
Q 005782 593 HTLLVFSTPPAG-HWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRS-GTRRIPLGEHNIHIGGTK 662 (677)
Q Consensus 593 eVvQlYv~~~~~-~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~-~~~~~e~G~y~i~vG~ss 662 (677)
||||||++++.+ ..+|.|+|+||+||+|+|||+++|+|+|++ ++|++||.+ ++|++++|+|+|+||+||
T Consensus 1 EVvqlY~~~~~~~~~~P~~~L~gF~rv~l~pGes~~v~~~l~~-~~l~~~d~~~~~~~~~~G~~~l~vG~sS 71 (71)
T PF14310_consen 1 EVVQLYVSDPQSSVQRPVKQLVGFERVSLAPGESKTVSFTLPP-EDLAYWDEDAGKWVIEPGTYTLSVGDSS 71 (71)
T ss_dssp EEEEEEEEESSSSS---S-EEEEEEEEEE-TT-EEEEEEEEEH-HHHEEEETTTTCEEE-SEEEEEEEECCT
T ss_pred CEEEEEEEeCCCCCCCchheecceEEEEECCCCEEEEEEEECH-HHEeeEcCCCCEEEEeCCeEEEEEECCC
Confidence 899999999987 577999999999999999999999999999 899999998 699999999999999987
No 8
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.52 E-value=0.0092 Score=51.90 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=45.1
Q ss_pred CeeEEEEEEEEecCCC-CcceeEEEeecCCCCCCCccccccccccc-ccCCCCeEEEEEEeccCCCeeEEcCCCcEEeeC
Q 005782 574 RLTLGVQVDVKNVGSK-DGAHTLLVFSTPPAGHWAPHKQLVAFEKV-HVPAGAQQRVGINIHVCKYLSVVDRSGTRRIPL 651 (677)
Q Consensus 574 ~~~~~v~v~V~NtG~~-~G~eVvQlYv~~~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~ 651 (677)
++.++++++|+|.|.. ++.-.|++|+.... .+-..| .|+||++++|+|++.. . .+
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~---------~~~~~i~~L~~g~~~~v~~~~~~-~-------------~~ 74 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNS---------VSTVTIPSLAPGESETVTFTWTP-P-------------SP 74 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEE---------EEEEEESEB-TTEEEEEEEEEE--S-------------S-
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCce---------eccEEECCcCCCcEEEEEEEEEe-C-------------CC
Confidence 4679999999999987 46667888886532 144555 6999999999999997 3 46
Q ss_pred eEEEEEEe
Q 005782 652 GEHNIHIG 659 (677)
Q Consensus 652 G~y~i~vG 659 (677)
|.|.|.+=
T Consensus 75 G~~~i~~~ 82 (101)
T PF07705_consen 75 GSYTIRVV 82 (101)
T ss_dssp CEEEEEEE
T ss_pred CeEEEEEE
Confidence 88877664
No 9
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.55 E-value=0.044 Score=45.88 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=38.3
Q ss_pred CeeEEEEEEEEecCCCCcceeEEEeecCCCC-C--CCcccccccccccccCCCCeEEEEEEeccCCCeeEEcCCCcEEee
Q 005782 574 RLTLGVQVDVKNVGSKDGAHTLLVFSTPPAG-H--WAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSGTRRIP 650 (677)
Q Consensus 574 ~~~~~v~v~V~NtG~~~G~eVvQlYv~~~~~-~--~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e 650 (677)
++.++++++|+|.|..+-.. +.+=+..|.+ . ..|. ++ ..|+|||+++++|.|.... -.+
T Consensus 4 G~~~~~~~tv~N~g~~~~~~-v~~~l~~P~GW~~~~~~~-~~-----~~l~pG~s~~~~~~V~vp~-----------~a~ 65 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTN-VSLSLSLPEGWTVSASPA-SV-----PSLPPGESVTVTFTVTVPA-----------DAA 65 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS--EEEEE--TTSE---EEE-EE-------B-TTSEEEEEEEEEE-T-----------T--
T ss_pred CCEEEEEEEEEECCCCceee-EEEEEeCCCCccccCCcc-cc-----ccCCCCCEEEEEEEEECCC-----------CCC
Confidence 36789999999999765332 3344455654 2 2232 11 1799999999999999733 125
Q ss_pred CeEEEEEEe
Q 005782 651 LGEHNIHIG 659 (677)
Q Consensus 651 ~G~y~i~vG 659 (677)
+|+|.|.+-
T Consensus 66 ~G~y~v~~~ 74 (78)
T PF10633_consen 66 PGTYTVTVT 74 (78)
T ss_dssp SEEEEEEEE
T ss_pred CceEEEEEE
Confidence 899988763
No 10
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=93.95 E-value=0.33 Score=41.21 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=33.8
Q ss_pred EEEEEEEEecCCCC------cceeEEEeecCCCCC--C---CcccccccccccccCCCCeEEEEEEeccCCCeeEEcCCC
Q 005782 577 LGVQVDVKNVGSKD------GAHTLLVFSTPPAGH--W---APHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSG 645 (677)
Q Consensus 577 ~~v~v~V~NtG~~~------G~eVvQlYv~~~~~~--~---~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~ 645 (677)
+.+.++|+|+++.+ .---.-+.|.++.+. - +=..=...+..+.|+|||+.+.+++++. .+++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~-~~~~------ 74 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDL-KDLS------ 74 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS-----------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECC-CCCC------
Confidence 56777788877631 111133444444331 0 0111134456778999999999999998 5444
Q ss_pred cEEeeCeEEEEE
Q 005782 646 TRRIPLGEHNIH 657 (677)
Q Consensus 646 ~~~~e~G~y~i~ 657 (677)
+|+|++.
T Consensus 75 -----~G~Y~~~ 81 (82)
T PF12690_consen 75 -----PGEYTLE 81 (82)
T ss_dssp -----SEEEEEE
T ss_pred -----CceEEEe
Confidence 8999875
No 11
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=90.53 E-value=5.2 Score=44.53 Aligned_cols=96 Identities=21% Similarity=0.220 Sum_probs=60.2
Q ss_pred HHHcCCcceEEeeccccCC-----cccccCHHHHHHHhhcccccCcEEEcCCcccccccccccccCCHHHHHHHHHHhC-
Q 005782 150 CVMEGKVASVMCSYNQVNG-----VPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAG- 223 (677)
Q Consensus 150 ai~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~m~~~~~~~~~~~~~~ea~~~al~AG- 223 (677)
.|+++.+ .+|.|-+.+.| ..|+.++.+++.+|+.=+.. |.-+.. ++|=..+|+..|
T Consensus 60 ~iDe~lv-l~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~-GaR~Ae----------------pGEFs~RAFLNgK 121 (454)
T COG0486 60 IIDEVLV-LYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKL-GARLAE----------------PGEFSKRAFLNGK 121 (454)
T ss_pred EeeeeeE-EEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHc-CCeecC----------------CCcchHHHHhcCC
Confidence 6677755 89999999877 57899999988888754433 222222 223346677666
Q ss_pred CCCCCc--------cchHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHh
Q 005782 224 LDLDCG--------PFLGLHTESAVQ--RGLLSEIDINNALVNTLTVQMRL 264 (677)
Q Consensus 224 ~D~~~~--------~~~~~~l~~av~--~g~i~~~~id~av~RIL~~k~~~ 264 (677)
+|+.-- ...-.....|++ +|.+ .+.|++-.++++.+....
T Consensus 122 ~DLtqAEai~dLI~A~te~a~r~A~~~l~G~l-s~~i~~lr~~li~~~a~v 171 (454)
T COG0486 122 LDLTQAEAIADLIDAKTEQAARIALRQLQGAL-SQLINELREALLELLAQV 171 (454)
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHh
Confidence 776421 011123344444 4777 467888888888877665
No 12
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=90.43 E-value=1.8 Score=37.77 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=46.1
Q ss_pred eeEEEEEEEEecCCCCcceeEEEeecCCCCCCCcccccccccccccCCCCeEEEEEEeccCCCeeEEcCCCcEEeeCeEE
Q 005782 575 LTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSGTRRIPLGEH 654 (677)
Q Consensus 575 ~~~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G~y 654 (677)
...+.+++|+|+|....+--+ +.+....... -.-+..-.|+||++.++++++.+.+....++..-.-..|.|.+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v----~~~~~~~~~~--~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~e~~~~ 93 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRV----RQPESLSSFF--SVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLVITTEGGSF 93 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEE----EeCCcCCCCE--EEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEEEEECCeEE
Confidence 467899999999998765333 3333111111 0123345699999999999999325565554333233445555
Q ss_pred EEEE
Q 005782 655 NIHI 658 (677)
Q Consensus 655 ~i~v 658 (677)
.|.|
T Consensus 94 ~i~v 97 (102)
T PF14874_consen 94 EIPV 97 (102)
T ss_pred EEEE
Confidence 4443
No 13
>COG1470 Predicted membrane protein [Function unknown]
Probab=82.30 E-value=4.8 Score=44.62 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=48.1
Q ss_pred eeEEEEEEEEecCCCCcceeEEEeec-CCCC--CCCcccccccccccccCCCCeEEEEEEeccCCCeeEEcCCCcEEeeC
Q 005782 575 LTLGVQVDVKNVGSKDGAHTLLVFST-PPAG--HWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSGTRRIPL 651 (677)
Q Consensus 575 ~~~~v~v~V~NtG~~~G~eVvQlYv~-~~~~--~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~ 651 (677)
.+...+|++.|.|+-+-+ .-|=++ .|.. ..--.-++ .-.||.|+|||+++|++++.+.. -.+|
T Consensus 284 ~t~sf~V~IeN~g~~~d~--y~Le~~g~pe~w~~~Fteg~~-~vt~vkL~~gE~kdvtleV~ps~-----------na~p 349 (513)
T COG1470 284 TTASFTVSIENRGKQDDE--YALELSGLPEGWTAEFTEGEL-RVTSVKLKPGEEKDVTLEVYPSL-----------NATP 349 (513)
T ss_pred CceEEEEEEccCCCCCce--eEEEeccCCCCcceEEeeCce-EEEEEEecCCCceEEEEEEecCC-----------CCCC
Confidence 467889999999876432 222233 3332 10001111 13678899999999999999842 2378
Q ss_pred eEEEEEEeCCCc
Q 005782 652 GEHNIHIGGTKH 663 (677)
Q Consensus 652 G~y~i~vG~ss~ 663 (677)
|+|.+.|-.+++
T Consensus 350 G~Ynv~I~A~s~ 361 (513)
T COG1470 350 GTYNVTITASSS 361 (513)
T ss_pred CceeEEEEEecc
Confidence 999999876553
No 14
>PRK13202 ureB urease subunit beta; Reviewed
Probab=81.69 E-value=2.9 Score=36.68 Aligned_cols=51 Identities=20% Similarity=0.151 Sum_probs=30.6
Q ss_pred EEEEEEEEecCCCCcceeEEEeecCCCCCCCc-----cccccc-------ccccccCCCCeEEEEEE
Q 005782 577 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVA-------FEKVHVPAGAQQRVGIN 631 (677)
Q Consensus 577 ~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~g-------F~kv~L~pGes~~V~~~ 631 (677)
-+++++|+|||+++ +|+=-+...-...| ...=.| =.-|..+||++++|++.
T Consensus 21 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRP----VQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCc----eEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 46899999999997 78743332211111 111111 13456789999999875
No 15
>PRK13203 ureB urease subunit beta; Reviewed
Probab=81.50 E-value=2.9 Score=36.58 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=30.5
Q ss_pred EEEEEEEEecCCCCcceeEEEeecCCCCCCCc-----ccccccc-------cccccCCCCeEEEEEE
Q 005782 577 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 631 (677)
Q Consensus 577 ~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 631 (677)
=+++++|+|||+|+ +|+=-+...-...| ...=.|+ .-|..+|||+|+|++-
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 20 ETVTLTVANTGDRP----IQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEEEEEEeCCCCc----eEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999997 88743332211111 1111111 3456789999998874
No 16
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=81.47 E-value=3.1 Score=36.45 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=30.6
Q ss_pred EEEEEEEEecCCCCcceeEEEeecCCCCCCC-----cccccccc-------cccccCCCCeEEEEEE
Q 005782 577 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWA-----PHKQLVAF-------EKVHVPAGAQQRVGIN 631 (677)
Q Consensus 577 ~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~-----P~k~L~gF-------~kv~L~pGes~~V~~~ 631 (677)
=+++++|+|||+|+ +|+=-+...-... ....=.|| .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRp----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 20 EAVTLKVKNTGDRP----IQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CEEEEEEEeCCCcc----eEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 46899999999997 7874333221111 11111122 3456789999998874
No 17
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=80.66 E-value=3.3 Score=36.12 Aligned_cols=52 Identities=17% Similarity=0.200 Sum_probs=27.4
Q ss_pred eEEEEEEEEecCCCCcceeEEEeecCCCCCCCc-----ccccccc-------cccccCCCCeEEEEEE
Q 005782 576 TLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 631 (677)
Q Consensus 576 ~~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 631 (677)
.-+++++|+|||+|+ +|+=-+.......| ...=.|| .-|..+||++|+|++-
T Consensus 18 r~~~~l~V~N~GDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 18 RERITLEVTNTGDRP----IQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp SEEEEEEEEE-SSS-----EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred CcEEEEEEEeCCCcc----eEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 457899999999997 88744433221111 1111111 3456789999999874
No 18
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=79.76 E-value=3.8 Score=35.87 Aligned_cols=51 Identities=22% Similarity=0.176 Sum_probs=30.6
Q ss_pred EEEEEEEEecCCCCcceeEEEeecCCCCCCCc-----ccccccc-------cccccCCCCeEEEEEE
Q 005782 577 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 631 (677)
Q Consensus 577 ~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 631 (677)
=+++++|+|||+|+ +|+=-+...-...| ...=.|+ .-|..+||++++|++-
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 20 KTVSVKVKNTGDRP----IQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred cEEEEEEEeCCCcc----eEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999997 78743332111111 1111111 3456789999999874
No 19
>COG1470 Predicted membrane protein [Function unknown]
Probab=79.58 E-value=9.1 Score=42.48 Aligned_cols=81 Identities=14% Similarity=0.256 Sum_probs=55.1
Q ss_pred eeEEEEEEEEecCCCCcceeEEEeecCCCCCCCccccccccccc-ccCCCCeEEEEEEeccCCCeeEEcCCCcEEeeCeE
Q 005782 575 LTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEKV-HVPAGAQQRVGINIHVCKYLSVVDRSGTRRIPLGE 653 (677)
Q Consensus 575 ~~~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G~ 653 (677)
+..++.+.|.|+|+.+=.. +-|=|..|.+= ..+.-.| ++ .|+|||+++|.++|+.-. -..+|+
T Consensus 397 ee~~i~i~I~NsGna~Ltd-Ikl~v~~PqgW---ei~Vd~~-~I~sL~pge~~tV~ltI~vP~-----------~a~aGd 460 (513)
T COG1470 397 EEKTIRISIENSGNAPLTD-IKLTVNGPQGW---EIEVDES-TIPSLEPGESKTVSLTITVPE-----------DAGAGD 460 (513)
T ss_pred ccceEEEEEEecCCCccce-eeEEecCCccc---eEEECcc-cccccCCCCcceEEEEEEcCC-----------CCCCCc
Confidence 4578889999999766555 34556666541 1123334 45 589999999999998632 126899
Q ss_pred EEEEEeC------CCceEEEEEEe
Q 005782 654 HNIHIGG------TKHSVSLHAAT 671 (677)
Q Consensus 654 y~i~vG~------ss~~~~~~~~~ 671 (677)
|+|.+-. ++.++++.|.+
T Consensus 461 Y~i~i~~ksDq~s~e~tlrV~V~~ 484 (513)
T COG1470 461 YRITITAKSDQASSEDTLRVVVGQ 484 (513)
T ss_pred EEEEEEEeeccccccceEEEEEec
Confidence 9998863 44568888764
No 20
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=78.98 E-value=5.3 Score=35.15 Aligned_cols=51 Identities=16% Similarity=0.044 Sum_probs=28.5
Q ss_pred EEEEEEEecCCCCcceeEEEeecCCCCCCCcccccccccccccCCCCeEEEEEEeccCCCeeEEcCCCcEEeeCeEEEEE
Q 005782 578 GVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSGTRRIPLGEHNIH 657 (677)
Q Consensus 578 ~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G~y~i~ 657 (677)
.|+++++|.|... .++ .+.. ......|.||++++++|+-. ++|+|+++
T Consensus 44 ~v~l~~~N~~~~~-h~~---~i~~------------~~~~~~l~~g~~~~~~f~~~----------------~~G~y~~~ 91 (104)
T PF13473_consen 44 PVTLTFTNNDSRP-HEF---VIPD------------LGISKVLPPGETATVTFTPL----------------KPGEYEFY 91 (104)
T ss_dssp EEEEEEEE-SSS--EEE---EEGG------------GTEEEEE-TT-EEEEEEEE-----------------S-EEEEEB
T ss_pred eEEEEEEECCCCc-EEE---EECC------------CceEEEECCCCEEEEEEcCC----------------CCEEEEEE
Confidence 4678889998885 222 2221 12336799999999988533 37888887
Q ss_pred EeC
Q 005782 658 IGG 660 (677)
Q Consensus 658 vG~ 660 (677)
.+-
T Consensus 92 C~~ 94 (104)
T PF13473_consen 92 CTM 94 (104)
T ss_dssp -SS
T ss_pred cCC
Confidence 763
No 21
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=75.05 E-value=4.5 Score=35.20 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=30.5
Q ss_pred eEEEEEEEEecCCCCcceeEEEeecCCCC----C---CCcc---c--ccccccccccCCCCeEEEEEE
Q 005782 576 TLGVQVDVKNVGSKDGAHTLLVFSTPPAG----H---WAPH---K--QLVAFEKVHVPAGAQQRVGIN 631 (677)
Q Consensus 576 ~~~v~v~V~NtG~~~G~eVvQlYv~~~~~----~---~~P~---k--~L~gF~kv~L~pGes~~V~~~ 631 (677)
.-+++++|.|||+|. +|+=-+.... . .|.. + -.-.=..|..+||+.|+|++-
T Consensus 19 r~~~~i~V~NtGDRP----IQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV 82 (106)
T COG0832 19 RPTVTIEVANTGDRP----IQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELV 82 (106)
T ss_pred CcceEEEEeecCCCc----eEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEE
Confidence 456788899999997 7763322111 0 0100 0 111224567789999999874
No 22
>PRK13201 ureB urease subunit beta; Reviewed
Probab=74.63 E-value=5.9 Score=36.34 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=31.1
Q ss_pred EEEEEEEEecCCCCcceeEEEeecCCCCCCCc-----ccccccc-------cccccCCCCeEEEEEE
Q 005782 577 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 631 (677)
Q Consensus 577 ~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 631 (677)
-+++++|+|||+|+ ||+=-+...-...| ...=.|| .-|..+||++++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 82 (136)
T PRK13201 20 PETVIEVENTGDRP----IQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV 82 (136)
T ss_pred CEEEEEEEeCCCcc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999997 88743332211111 1111111 3466789999999875
No 23
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=73.99 E-value=4.9 Score=40.36 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=34.7
Q ss_pred EEEecCCCCcceeEEEeecCCCCC---CCc--------ccccccccccccCCCCeEEEEEEeccCCCeeEEcCCCcEEee
Q 005782 582 DVKNVGSKDGAHTLLVFSTPPAGH---WAP--------HKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSGTRRIP 650 (677)
Q Consensus 582 ~V~NtG~~~G~eVvQlYv~~~~~~---~~P--------~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e 650 (677)
++-|.|. |.-+++||-+.+... ..| .+.+....++.|.||||-+ |.+.---+||- |
T Consensus 111 DIINRGG--G~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiT----L~Pg~yH~Fw~-------e 177 (225)
T PF07385_consen 111 DIINRGG--GNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESIT----LPPGIYHWFWG-------E 177 (225)
T ss_dssp EEEEEEE--S-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEE----E-TTEEEEEEE--------
T ss_pred heeecCC--ceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEe----eCCCCeeeEEe-------c
Confidence 4567665 788899999876441 122 4568889999999999855 66632234443 5
Q ss_pred CeEEEEEEe
Q 005782 651 LGEHNIHIG 659 (677)
Q Consensus 651 ~G~y~i~vG 659 (677)
+|. +.||
T Consensus 178 ~g~--vLig 184 (225)
T PF07385_consen 178 GGD--VLIG 184 (225)
T ss_dssp TTS--EEEE
T ss_pred CCC--EEEE
Confidence 555 6677
No 24
>PRK13205 ureB urease subunit beta; Reviewed
Probab=73.26 E-value=6.4 Score=36.88 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=31.7
Q ss_pred EEEEEEEEecCCCCcceeEEEeecCCCCCCCc-----ccccccc-------cccccCCCCeEEEEEE
Q 005782 577 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 631 (677)
Q Consensus 577 ~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 631 (677)
=+++++|+|||+|+ ||+=-|...-...| ...-.|| .-|..+||++++|++.
T Consensus 20 ~~i~L~V~NtGDRP----IQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 20 EAKTIEIINTGDRP----VQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999997 88743332211111 1111122 3466789999999986
No 25
>PRK13204 ureB urease subunit beta; Reviewed
Probab=73.22 E-value=6.3 Score=37.03 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=30.8
Q ss_pred EEEEEEEEecCCCCcceeEEEeecCCCCCCCc-----ccccccc-------cccccCCCCeEEEEEE
Q 005782 577 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 631 (677)
Q Consensus 577 ~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 631 (677)
=.++++|+|||+|+ |||=-+...-...| ...=.|| .-|..+||++++|++.
T Consensus 43 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 43 PRTTLTVRNTGDRP----IQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 36899999999997 88743332211111 1111111 3456789999999875
No 26
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=71.37 E-value=17 Score=31.08 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=30.7
Q ss_pred EEEEEEEecCCCCcceeEEEeecCCCCCCCcccccccccccccCCCCeEEEEEEecc
Q 005782 578 GVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEKVHVPAGAQQRVGINIHV 634 (677)
Q Consensus 578 ~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 634 (677)
.+.++++|.|+..- .++||-.. +....| .++.|+||++.++.+.+..
T Consensus 21 ~l~l~l~N~g~~~~--~~~v~~~~-y~~~~~-------~~~~v~ag~~~~~~w~l~~ 67 (89)
T PF05506_consen 21 NLRLTLSNPGSAAV--TFTVYDNA-YGGGGP-------WTYTVAAGQTVSLTWPLAA 67 (89)
T ss_pred EEEEEEEeCCCCcE--EEEEEeCC-cCCCCC-------EEEEECCCCEEEEEEeecC
Confidence 68899999865432 34444311 111223 5678999999999999854
No 27
>PRK13198 ureB urease subunit beta; Reviewed
Probab=70.64 E-value=7.9 Score=36.38 Aligned_cols=51 Identities=16% Similarity=0.084 Sum_probs=30.8
Q ss_pred EEEEEEEEecCCCCcceeEEEeecCCCCCCCc-----ccccccc-------cccccCCCCeEEEEEE
Q 005782 577 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 631 (677)
Q Consensus 577 ~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 631 (677)
=+++++|+|||+|+ ||+=-+...-...| ...-.|| .-|..+||++++|++.
T Consensus 48 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 48 PVTKVKVRNTGDRP----IQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 46899999999997 88743332211111 1111122 3466789999999875
No 28
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=67.25 E-value=17 Score=34.33 Aligned_cols=55 Identities=13% Similarity=0.208 Sum_probs=42.1
Q ss_pred eeEEEEEEEEecCCCCcceeEEEeecCCCCCCCcccccccccccc-cCCCCeEEEEEEecc
Q 005782 575 LTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEKVH-VPAGAQQRVGINIHV 634 (677)
Q Consensus 575 ~~~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~kv~-L~pGes~~V~~~l~~ 634 (677)
.-+.|.++.+|+++. ++--+-+..+. ...-.++++|.++. |+||++.++.+-|+-
T Consensus 85 ~mvsIql~ftN~s~~---~i~~I~i~~k~--l~~g~~i~~F~~I~~L~pg~s~t~~lgIDF 140 (145)
T PF14796_consen 85 SMVSIQLTFTNNSDE---PIKNIHIGEKK--LPAGMRIHEFPEIESLEPGASVTVSLGIDF 140 (145)
T ss_pred CcEEEEEEEEecCCC---eecceEECCCC--CCCCcEeeccCcccccCCCCeEEEEEEEec
Confidence 458899999999985 44445565543 12334799999996 999999999999986
No 29
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=66.79 E-value=12 Score=33.79 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=36.3
Q ss_pred EEEEEEEecCCCCcceeEEEeecCCCC--CCCccccccccccc-ccCCCCeEEEEEEecc
Q 005782 578 GVQVDVKNVGSKDGAHTLLVFSTPPAG--HWAPHKQLVAFEKV-HVPAGAQQRVGINIHV 634 (677)
Q Consensus 578 ~v~v~V~NtG~~~G~eVvQlYv~~~~~--~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~ 634 (677)
..+++|+|+|+ -.-.+|+.+..... ...+...|.=+=.. .|+||++++|.| +..
T Consensus 17 ~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 17 SASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRG 73 (122)
T ss_dssp EEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EEC
T ss_pred EEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Eec
Confidence 57899999999 56678888876211 12233334444444 589999999999 554
No 30
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=66.32 E-value=38 Score=30.15 Aligned_cols=59 Identities=29% Similarity=0.408 Sum_probs=31.5
Q ss_pred eEEEEEEEEecCCCCcceeEEEe-----ecC-CCC--CCCc-c--cccccc--cccccCCCCeEEEEEEecc
Q 005782 576 TLGVQVDVKNVGSKDGAHTLLVF-----STP-PAG--HWAP-H--KQLVAF--EKVHVPAGAQQRVGINIHV 634 (677)
Q Consensus 576 ~~~v~v~V~NtG~~~G~eVvQlY-----v~~-~~~--~~~P-~--k~L~gF--~kv~L~pGes~~V~~~l~~ 634 (677)
..+.+++|+|.|+.+=.--+... ..+ ..+ ...| . .....| .++.|+||++++|+++|+.
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 47889999999986544333322 111 111 1111 1 003334 3667999999999999997
No 31
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=64.31 E-value=11 Score=37.25 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=30.7
Q ss_pred EEEEEEEEecCCCCcceeEEEeecCCCCCCCc-----ccccccc-------cccccCCCCeEEEEEE
Q 005782 577 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 631 (677)
Q Consensus 577 ~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 631 (677)
=+++++|+|||+|+ +|+=-+...-...| .+.=.|| .-|..+||++++|++-
T Consensus 129 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 129 PAVTLDVTNTGDRP----IQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 36899999999997 78743332211111 1111122 3456789999998874
No 32
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=63.77 E-value=24 Score=32.22 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=36.1
Q ss_pred eeEEEEEEEEecCCCCcceeEEEeecCCCC-----C-------------CCcccccccccc-cccCCCCeEEEEEEecc
Q 005782 575 LTLGVQVDVKNVGSKDGAHTLLVFSTPPAG-----H-------------WAPHKQLVAFEK-VHVPAGAQQRVGINIHV 634 (677)
Q Consensus 575 ~~~~v~v~V~NtG~~~G~eVvQlYv~~~~~-----~-------------~~P~k~L~gF~k-v~L~pGes~~V~~~l~~ 634 (677)
...+++++|+|+++-.-. +++++..-.. + .-+..+|....+ |.|+|||+++|+|+|..
T Consensus 27 q~~~l~v~i~N~s~~~~t--v~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEIT--VKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKM 103 (121)
T ss_pred CEEEEEEEEEeCCCCCEE--EEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEc
Confidence 456788888887774433 4444432211 0 013444544443 68999999999999986
No 33
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=59.98 E-value=15 Score=32.45 Aligned_cols=60 Identities=13% Similarity=0.005 Sum_probs=34.9
Q ss_pred CeeEEEEEEEEecCCCCcceeEEEeecCC--CCCCCcc-cccccccccccCCCCeEEEEEEecc
Q 005782 574 RLTLGVQVDVKNVGSKDGAHTLLVFSTPP--AGHWAPH-KQLVAFEKVHVPAGAQQRVGINIHV 634 (677)
Q Consensus 574 ~~~~~v~v~V~NtG~~~G~eVvQlYv~~~--~~~~~P~-k~L~gF~kv~L~pGes~~V~~~l~~ 634 (677)
+..++|+++++|..+..-+. |++++..- .....+. .-.+-...+.|+|||++++++.|.+
T Consensus 14 G~d~~v~v~~~N~~~~~l~~-v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p 76 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRN-VSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITP 76 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EEC-EEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-H
T ss_pred CCCEEEEEEEEeCCcCcccc-ceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEc
Confidence 35799999999999887444 23332111 1111121 2233445667999999999999998
No 34
>PRK13986 urease subunit alpha; Provisional
Probab=58.84 E-value=15 Score=36.68 Aligned_cols=51 Identities=24% Similarity=0.187 Sum_probs=30.6
Q ss_pred EEEEEEEEecCCCCcceeEEEeecCCCCCCCc-----ccccccc-------cccccCCCCeEEEEEE
Q 005782 577 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 631 (677)
Q Consensus 577 ~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 631 (677)
=+++++|+|||+|+ +|+=-+...-...| ...=.|| .-|..+||++++|++.
T Consensus 125 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T PRK13986 125 KAVSVKVKNVGDRP----VQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187 (225)
T ss_pred cEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 46899999999997 78743332211111 1111111 3456789999998875
No 35
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=58.44 E-value=21 Score=33.64 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=38.3
Q ss_pred CeeEEEEEEEEecCCCCcceeE-E--EeecC-CCC--CCCccccccccccc------ccCCCCeEEEEEEecc
Q 005782 574 RLTLGVQVDVKNVGSKDGAHTL-L--VFSTP-PAG--HWAPHKQLVAFEKV------HVPAGAQQRVGINIHV 634 (677)
Q Consensus 574 ~~~~~v~v~V~NtG~~~G~eVv-Q--lYv~~-~~~--~~~P~k~L~gF~kv------~L~pGes~~V~~~l~~ 634 (677)
++.+.|..+|||+|+++=+++. + ++-.. ... ...=..++.+|.+. .|+|||++..++.++.
T Consensus 61 ~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~ 133 (149)
T PF09624_consen 61 SESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPY 133 (149)
T ss_pred ccEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecC
Confidence 3679999999999998766542 2 22211 111 11223445556322 2999999999998874
No 36
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=54.09 E-value=33 Score=37.17 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=30.4
Q ss_pred CeeEEEEEEEEecCCCCcceeEEE---------eecCCCCC--CCccccccccc------ccccCCCCeEEEEEEec
Q 005782 574 RLTLGVQVDVKNVGSKDGAHTLLV---------FSTPPAGH--WAPHKQLVAFE------KVHVPAGAQQRVGINIH 633 (677)
Q Consensus 574 ~~~~~v~v~V~NtG~~~G~eVvQl---------Yv~~~~~~--~~P~k~L~gF~------kv~L~pGes~~V~~~l~ 633 (677)
+.+++++++|||.|+.+ |+| |+...... ..-..+|.+-+ .--|+|||++++++++.
T Consensus 262 gR~l~~~l~VtN~g~~p----v~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 262 GRTLTMTLTVTNNGDSP----VRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp SSEEEEEEEEEEESSS-----BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-TT-EEEEEEEEE
T ss_pred CcEEEEEEEEEcCCCCc----eEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcCCCceEEEEEEee
Confidence 46899999999998754 333 12111111 11123555442 22489999999999984
No 37
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=53.04 E-value=32 Score=25.73 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=26.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Q 005782 235 HTESAVQRGLLSEIDINNALVNTLTVQMRLG 265 (677)
Q Consensus 235 ~l~~av~~g~i~~~~id~av~RIL~~k~~~G 265 (677)
.....++...-+.+.||..|..+|.+|..+|
T Consensus 12 e~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 12 ELVRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 3456677788899999999999999999997
No 38
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=50.76 E-value=14 Score=39.77 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=34.3
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCCCH--HHHHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLLPG--RQQELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~--~q~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
+..++||+||++.|... .+|.+|.++--.. --.++++++.+.+++..|+++. ++|+|+
T Consensus 75 ~~~~daDvVVitAG~~~---k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv 134 (323)
T TIGR01759 75 EAFKDVDAALLVGAFPR---KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANT 134 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 45689999999988643 3455664321111 1245566676655534554444 579987
No 39
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=50.61 E-value=78 Score=31.11 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=52.6
Q ss_pred CeeEEEEEEEEecCCCCcceeEEEee-cCCCCCCCcccccccc--cc-cccCCCCeEEEEEEeccCCCeeEEcCCC---c
Q 005782 574 RLTLGVQVDVKNVGSKDGAHTLLVFS-TPPAGHWAPHKQLVAF--EK-VHVPAGAQQRVGINIHVCKYLSVVDRSG---T 646 (677)
Q Consensus 574 ~~~~~v~v~V~NtG~~~G~eVvQlYv-~~~~~~~~P~k~L~gF--~k-v~L~pGes~~V~~~l~~~~~ls~~d~~~---~ 646 (677)
+..++|+++|.|.|+-+--.| ++.= +.|... -.-..|- .+ -+|+||++.+-++.|.+ ....+++-.. .
T Consensus 37 g~~v~V~~~iyN~G~~~A~dV-~l~D~~fp~~~---F~lvsG~~s~~~~~i~pg~~vsh~~vv~p-~~~G~f~~~~a~Vt 111 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSSAAYDV-KLTDDSFPPED---FELVSGSLSASWERIPPGENVSHSYVVRP-KKSGYFNFTPAVVT 111 (181)
T ss_pred CcEEEEEEEEEECCCCeEEEE-EEECCCCCccc---cEeccCceEEEEEEECCCCeEEEEEEEee-eeeEEEEccCEEEE
Confidence 467999999999999876664 4332 222211 0011121 11 25899999999999998 6677777653 3
Q ss_pred EEeeCeEEEEEEeCCCc
Q 005782 647 RRIPLGEHNIHIGGTKH 663 (677)
Q Consensus 647 ~~~e~G~y~i~vG~ss~ 663 (677)
+..+.|.=...++.|+.
T Consensus 112 Y~~~~~~~~~~~a~Ss~ 128 (181)
T PF05753_consen 112 YRDSEGAKELQVAYSSP 128 (181)
T ss_pred EECCCCCceeEEEEecC
Confidence 44555544555665543
No 40
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=45.68 E-value=64 Score=29.56 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=38.7
Q ss_pred eEEEEEEEEecCCC----CcceeEEEeecCCCCC-CCcccccccccccccCCCCeEEEEEEecc
Q 005782 576 TLGVQVDVKNVGSK----DGAHTLLVFSTPPAGH-WAPHKQLVAFEKVHVPAGAQQRVGINIHV 634 (677)
Q Consensus 576 ~~~v~v~V~NtG~~----~G~eVvQlYv~~~~~~-~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 634 (677)
.-.+.+++||+|+. .|-=-|++.-.+-... ....++-..=+.|.|+||++....|....
T Consensus 19 ~~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 19 QRHATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred ccEEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 34789999999986 6666677652221111 11222333456788999999998888875
No 41
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=44.74 E-value=20 Score=32.05 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=31.7
Q ss_pred cccccccccccCceeecccCCceeeccCCCCCCcccccccccccccccccCCCeeE-EEEEEEEecCCCCcceeEEEeec
Q 005782 522 VYPFGHGMSYTNFVHTVANAPTVVAVPLDGRHGSINATISGKAIKVTHAKCNRLTL-GVQVDVKNVGSKDGAHTLLVFST 600 (677)
Q Consensus 522 lypFG~GLSYT~F~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~V~NtG~~~G~eVvQlYv~ 600 (677)
.|-.-||+.||+|....-.+.....+-.+. ++.+ -..++|+|+|++.=.=-+=-|+.
T Consensus 31 ~y~~~~g~g~~~f~~~~~gi~~~~~v~V~~----------------------~~~vEi~~l~l~N~~~~~r~L~vtsy~E 88 (110)
T PF06165_consen 31 EYEVRHGFGYTRFEREDGGIETELTVFVPP----------------------DDPVEIRRLRLTNTSNRPRRLSVTSYAE 88 (110)
T ss_dssp EEEEEEESSEEEEEEEETTEEEEEEEE--T----------------------TSSEEEEEEEEEE-SSS-EEEEEEEEEE
T ss_pred cEEEEECCCeEEEEEEeCCEEEEEEEEEcC----------------------CCCEEEEEEEEEECcCCcEEEEEEEEEE
Confidence 588999999999998754432211111110 1123 35899999999865433333443
No 42
>COG1160 Predicted GTPases [General function prediction only]
Probab=44.73 E-value=56 Score=36.52 Aligned_cols=47 Identities=28% Similarity=0.327 Sum_probs=31.7
Q ss_pred HHHHHHhhcCCEEEEEecCCCcccccccccCCCCCCHHHHHHHHHHHhhCCCCEEEEEec
Q 005782 376 GAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMS 435 (677)
Q Consensus 376 ~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvVl~~ 435 (677)
+++..++++||++|+++... + .+.+...++.+.|. ..+||+|+|++=
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~-----~-------Git~~D~~ia~~Lr-~~~kpviLvvNK 121 (444)
T COG1160 75 EQALIAIEEADVILFVVDGR-----E-------GITPADEEIAKILR-RSKKPVILVVNK 121 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCC-----C-------CCCHHHHHHHHHHH-hcCCCEEEEEEc
Confidence 45677889999999998432 1 23444455555555 467899999873
No 43
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=43.86 E-value=73 Score=25.23 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHhhC-CCCEEEEEe
Q 005782 411 PGRQQELVSKVSMAS-KGPTILVLM 434 (677)
Q Consensus 411 p~~q~~Li~~v~~~~-~~pvVvVl~ 434 (677)
..+|..|.+++.... ++|+++|++
T Consensus 31 ie~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 31 IEEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp HHHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 367999999998877 789888764
No 44
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=43.67 E-value=68 Score=32.72 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=31.4
Q ss_pred EEEEEEEecCCCCcceeEEEeecCCCCCCCccccccccc-ccccCCCCeEEEEEEec
Q 005782 578 GVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFE-KVHVPAGAQQRVGINIH 633 (677)
Q Consensus 578 ~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~-kv~L~pGes~~V~~~l~ 633 (677)
.++++|+|+|+. .-.+|.-+.+.... +...+.-.= -..|+||+++.|++-..
T Consensus 41 ~~si~v~N~~~~--p~lvQ~wv~~~~~~--~~~~fivtPPl~rl~pg~~q~vRii~~ 93 (230)
T PRK09918 41 EGSINVKNTDSN--PILLYTTLVDLPED--KSKLLLVTPPVARVEPGQSQQVRFILK 93 (230)
T ss_pred eEEEEEEcCCCC--cEEEEEEEecCCCC--CCCCEEEcCCeEEECCCCceEEEEEEC
Confidence 467888999975 47788888654321 000011111 23578999999987643
No 45
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=43.08 E-value=18 Score=38.71 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=32.6
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCCCHHH----HHHHHHHHhhCCCCEEEEEecCceeecc
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDVA 442 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~v~~~~~~pvVvVl~~g~P~~l~ 442 (677)
+..+++|+||++.|... .+|.+|.++ =..- .++++++.+..++..+++ +.++|+|+.
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~dl--l~~N~~I~~~i~~~i~~~a~~~~ivi-vvtNPvDv~ 116 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRADL--LTKNTPIFKATGEALSEYAKPTVKVL-VIGNPVNTN 116 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEE-EeCCchHHH
Confidence 35689999999988643 345566432 1112 345556665443334333 445799873
No 46
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=40.49 E-value=8.8 Score=35.96 Aligned_cols=54 Identities=22% Similarity=0.453 Sum_probs=30.5
Q ss_pred HhhcCCEEEEEecCCCcccccccccCCCCCCHHH----HHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 381 ASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 381 ~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
..+++|+||++.|... .+|.+|.++ =... .++.+++.+.+++.+++| . .+|+|+
T Consensus 66 ~~~~aDivvitag~~~---~~g~sR~~l--l~~N~~i~~~~~~~i~~~~p~~~viv-v-tNPvd~ 123 (141)
T PF00056_consen 66 ALKDADIVVITAGVPR---KPGMSRLDL--LEANAKIVKEIAKKIAKYAPDAIVIV-V-TNPVDV 123 (141)
T ss_dssp GGTTESEEEETTSTSS---STTSSHHHH--HHHHHHHHHHHHHHHHHHSTTSEEEE---SSSHHH
T ss_pred ccccccEEEEeccccc---cccccHHHH--HHHhHhHHHHHHHHHHHhCCccEEEE-e-CCcHHH
Confidence 4678999998887643 344455332 1222 244555666565544433 3 569986
No 47
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=39.81 E-value=1.5e+02 Score=33.31 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=56.6
Q ss_pred HHHHcCCcceEEeeccccCC-----cccccCHHHHHHHhhcccccCcEEEcCCcccccccccccccCCHHHHHHHHHHhC
Q 005782 149 MCVMEGKVASVMCSYNQVNG-----VPTCADPNILKRTIRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAG 223 (677)
Q Consensus 149 ~ai~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~m~~~~~~~~~~~~~~ea~~~al~AG 223 (677)
..|+++.+ ..|.+-+.+.| .+|+.++.+++.+|..=+.+ |.-..+ ++|=+.+|+..|
T Consensus 49 ~~iD~~l~-~~f~~P~S~TGEDvvEi~~HGg~~v~~~il~~l~~~-g~R~A~----------------pGEFT~RAflNG 110 (442)
T TIGR00450 49 KCKDDELL-FKFVAPNSYTGEDVIEIQCHGSMLIVQEILQLCLKS-GARLAQ----------------PGEFTQRAFLNG 110 (442)
T ss_pred CEeeeEEE-EEEcCCCCcccccEEEEECCCCHHHHHHHHHHHHHc-CCeEcC----------------CchhhHHHHhcC
Confidence 34566644 88999998877 58999999999888854433 433322 334457777777
Q ss_pred -CCCCCc--------cchHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHh
Q 005782 224 -LDLDCG--------PFLGLHTESAVQ--RGLLSEIDINNALVNTLTVQMRL 264 (677)
Q Consensus 224 -~D~~~~--------~~~~~~l~~av~--~g~i~~~~id~av~RIL~~k~~~ 264 (677)
+|+.-- .........|+. +|.++ ++|++--.+++.+...+
T Consensus 111 k~DL~qaEav~dlI~a~t~~~~~~A~~~l~G~ls-~~~~~~r~~l~~~~a~i 161 (442)
T TIGR00450 111 KMDLTQAEAINELILAPNNKVKDIALNKLAGELD-QKIEAIRKSLLQLLAQV 161 (442)
T ss_pred CccHHHHHHHHHHHhCCCHHHHHHHHHhcCcHHH-HHHHHHHHHHHHHHHHe
Confidence 777421 011122333433 35553 45555555555555443
No 48
>PRK13556 azoreductase; Provisional
Probab=39.80 E-value=84 Score=31.26 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=28.3
Q ss_pred hHHHHHHHhhcCCEEEEEecCCCcccccccccCCCCCCHHHHHHHHHHHh
Q 005782 374 LFGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSM 423 (677)
Q Consensus 374 ~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~ 423 (677)
..++..+..++||.+|++.=.. ++.+|..-..+|+.+..
T Consensus 79 ~~~~~~~~l~~AD~iVi~~P~y-----------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13556 79 VADKYLNQFLEADKVVFAFPLW-----------NFTIPAVLHTYIDYLNR 117 (208)
T ss_pred HHHHHHHHHHHCCEEEEecccc-----------ccCCcHHHHHHHHHHhc
Confidence 3445567788999888776322 46788888888888875
No 49
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=39.51 E-value=1.9e+02 Score=24.04 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=43.0
Q ss_pred eEEEEEEEEec-CC-CCcceeEEEeecCCCCCCCcccccccccccccCCCCeEEEEEEeccCCCeeEEcCCCcEEeeCeE
Q 005782 576 TLGVQVDVKNV-GS-KDGAHTLLVFSTPPAGHWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSGTRRIPLGE 653 (677)
Q Consensus 576 ~~~v~v~V~Nt-G~-~~G~eVvQlYv~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G~ 653 (677)
.+++++.+-|. .. ..|. -+++|++.... +. .+.....-.|.||++..|+|.+.. +.+ +.+..+.+++..|
T Consensus 5 ~f~A~i~il~~~~~i~~Gy-~~~l~~~t~~~---~~-~i~~i~~~~l~~g~~~~v~i~f~~-~p~-~~e~~grf~lr~g- 76 (87)
T cd03708 5 EFEAEILVLHHPTTISPGY-QATVHIGSIRQ---TA-RIVSIDKDVLRTGDRALVRFRFLY-HPE-YLREGQRLIFREG- 76 (87)
T ss_pred EEEEEEEEEcCCCcccCCC-EeEEEEcCCEE---EE-EEEeccHhhccCCCeEEEEEEECC-CCc-EEccCCeEEEECC-
Confidence 46666666662 22 3443 46677765431 11 111111256899999999999543 345 4455566666666
Q ss_pred EEEEEe
Q 005782 654 HNIHIG 659 (677)
Q Consensus 654 y~i~vG 659 (677)
-++-+|
T Consensus 77 ~tva~G 82 (87)
T cd03708 77 RTKGVG 82 (87)
T ss_pred CcEEEE
Confidence 455555
No 50
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=38.80 E-value=1.5e+02 Score=25.61 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=34.9
Q ss_pred CeeEEEEEEEEecCCCCcceeEEEeecCCCCC-CCcccccccccccccCCCCeEEEEEEecc
Q 005782 574 RLTLGVQVDVKNVGSKDGAHTLLVFSTPPAGH-WAPHKQLVAFEKVHVPAGAQQRVGINIHV 634 (677)
Q Consensus 574 ~~~~~v~v~V~NtG~~~G~eVvQlYv~~~~~~-~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 634 (677)
++..++++.++|+.+.+-.=--.+|==+..+. ..|. .-.++++.|.++++.+|+..-+.
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~~~l~~~~~~~l~~~ap~ 82 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPE--QSPWQSLTLPGGQTVTLSAVAPN 82 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--T--T---EEEEE-TT-EEEEEEE-SS
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCC--CCCCEEEEEcCCCEEEEEEECCC
Confidence 46789999999998887655555555566663 2332 25688999999999998877664
No 51
>PRK13555 azoreductase; Provisional
Probab=38.65 E-value=79 Score=31.69 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=27.0
Q ss_pred HHHHHHHhhcCCEEEEEecCCCcccccccccCCCCCCHHHHHHHHHHHh
Q 005782 375 FGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSM 423 (677)
Q Consensus 375 ~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~ 423 (677)
..+..+..+.||.+|++.=.. ++.+|..-...|+.|..
T Consensus 80 ~~~~~~~~~~AD~lvi~~P~~-----------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13555 80 VDQYLNQFLEADKVVFAFPLW-----------NFTVPAPLITYISYLSQ 117 (208)
T ss_pred HHHHHHHHHHcCEEEEEcCcc-----------cccchHHHHHHHHHHhc
Confidence 455667788999888775321 46778888888887774
No 52
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=38.25 E-value=2.2e+02 Score=24.74 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=41.0
Q ss_pred eeEEEEEEEEecCCCCcceeEEEeecCCCCC-CCcccccccccccccCCCCeEEEEEEecc
Q 005782 575 LTLGVQVDVKNVGSKDGAHTLLVFSTPPAGH-WAPHKQLVAFEKVHVPAGAQQRVGINIHV 634 (677)
Q Consensus 575 ~~~~v~v~V~NtG~~~G~eVvQlYv~~~~~~-~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 634 (677)
+..++++.|+|+.+.+-.=--.+|==+..+. ..|. ...++.+.|.++++.+|+..-+-
T Consensus 32 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~l~l~~~~~~~l~~~ap~ 90 (101)
T cd09030 32 GLLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPE--QEPWQSLTLPGGQTVTLQAVAPN 90 (101)
T ss_pred CeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCC--CCCCEEEEECCCCeEEEEEEcCC
Confidence 5689999999998866444444444455553 3343 57789999999999998876553
No 53
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=35.54 E-value=33 Score=36.96 Aligned_cols=56 Identities=21% Similarity=0.383 Sum_probs=32.4
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCCCHHH----HHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
+..+++|+||++.|... .+|.+|.++ =..- .++.+++.+..++..++++. ++|+|+
T Consensus 72 ~~~~~aDiVVitAG~~~---~~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 131 (323)
T cd00704 72 EAFKDVDVAILVGAFPR---KPGMERADL--LRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANT 131 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CcCCcHHHH--HHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHH
Confidence 45688999999988643 344555432 1122 34555666553233444444 579986
No 54
>PRK05442 malate dehydrogenase; Provisional
Probab=35.49 E-value=26 Score=37.72 Aligned_cols=56 Identities=16% Similarity=0.228 Sum_probs=31.7
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCCCHHH----HHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
+..++||+||++.|... .+|.+|.++ =..- .++.+++.+..++..+++ +.++|+|+
T Consensus 76 ~~~~daDiVVitaG~~~---k~g~tR~dl--l~~Na~i~~~i~~~i~~~~~~~~iii-vvsNPvDv 135 (326)
T PRK05442 76 VAFKDADVALLVGARPR---GPGMERKDL--LEANGAIFTAQGKALNEVAARDVKVL-VVGNPANT 135 (326)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEE-EeCCchHH
Confidence 45689999999888543 345566432 1222 344555655332234433 34579987
No 55
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=35.36 E-value=33 Score=36.93 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=32.5
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCCCHHH----HHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
+..++||+||++.|... .+|.+|.++ =..- .++.+++.+.+++..+++ +.++|+|+
T Consensus 74 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iii-vvsNPvD~ 133 (322)
T cd01338 74 VAFKDADWALLVGAKPR---GPGMERADL--LKANGKIFTAQGKALNDVASRDVKVL-VVGNPCNT 133 (322)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEE-EecCcHHH
Confidence 45689999999988643 345565433 1222 344555655443234443 44579987
No 56
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=34.80 E-value=36 Score=36.44 Aligned_cols=58 Identities=16% Similarity=0.361 Sum_probs=34.0
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCC--CHHHHHHHHHHHhhCCCCEEEEEecCceeecc
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLL--PGRQQELVSKVSMASKGPTILVLMSGGPIDVA 442 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L--p~~q~~Li~~v~~~~~~pvVvVl~~g~P~~l~ 442 (677)
+..+.||+||++.|... ..|-+|.+|-- -.-..++.+++.+.+++ .+++ ..+||+|+.
T Consensus 65 ~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~~~d-~ivl-VvtNPvD~~ 124 (313)
T COG0039 65 EDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKYAPD-AIVL-VVTNPVDIL 124 (313)
T ss_pred hhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhhCCC-eEEE-EecCcHHHH
Confidence 44688999999988654 45555544310 01124566667665554 3433 335699873
No 57
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.74 E-value=1.1e+02 Score=26.46 Aligned_cols=40 Identities=18% Similarity=0.064 Sum_probs=29.5
Q ss_pred HHHHhhcCCEEEEEecCCCcccccccccCCCCCCHHHHHHHHHHHhhCCCCEEEE
Q 005782 378 AIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILV 432 (677)
Q Consensus 378 a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvV 432 (677)
..+..+++|+||++++.- ...-...+++.++..++|++.+
T Consensus 42 l~~~i~~aD~VIv~t~~v---------------sH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYV---------------SHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCCc---------------ChHHHHHHHHHHHHcCCcEEEE
Confidence 345678999999998643 2345678888888888997644
No 58
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=34.64 E-value=28 Score=36.99 Aligned_cols=57 Identities=16% Similarity=0.334 Sum_probs=33.3
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCCCH--HHHHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLLPG--RQQELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~--~q~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
+..++||+||++.|... .++.+|.++-.-. --.++.+++.+.+++ .+ |++.++|.++
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~-~~-viv~sNP~d~ 120 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKYGPD-AI-ILVVSNPVDI 120 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eE-EEEccChHHH
Confidence 35689999999998653 3455664332111 123455566665543 44 3444679987
No 59
>PLN00135 malate dehydrogenase
Probab=34.39 E-value=36 Score=36.44 Aligned_cols=57 Identities=12% Similarity=0.295 Sum_probs=32.3
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCCC--HHHHHHHHHHHhh-CCCCEEEEEecCceeec
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLLP--GRQQELVSKVSMA-SKGPTILVLMSGGPIDV 441 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp--~~q~~Li~~v~~~-~~~pvVvVl~~g~P~~l 441 (677)
+..++||+||++.|... .+|.+|.++--- .--.++++++.+. +++ .++++ .+||+|+
T Consensus 54 ~~~~daDiVVitAG~~~---k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~-aiviv-vsNPvDv 113 (309)
T PLN00135 54 EACKGVNIAVMVGGFPR---KEGMERKDVMSKNVSIYKSQASALEKHAAPD-CKVLV-VANPANT 113 (309)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEE-eCCcHHH
Confidence 45689999999998753 344455432110 0123456666663 343 44443 4579987
No 60
>PF08530 PepX_C: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; InterPro: IPR013736 This domain is found at the C terminus of cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). The domain, which is a beta sandwich, is also found in serine peptidases belonging to MEROPS peptidase family S15: Xaa-Pro dipeptidyl-peptidases. Members of this entry, that are not characterised as peptidases, show extensive low-level similarity to the Xaa-Pro dipeptidyl-peptidases. ; GO: 0008239 dipeptidyl-peptidase activity; PDB: 2B4K_D 1RYY_F 2B9V_O 1NX9_B 3PUH_B 3I2I_A 3I2G_A 1JU4_A 3I2K_A 1L7R_A ....
Probab=33.91 E-value=1.5e+02 Score=29.57 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=31.1
Q ss_pred eeEEEEEEEEecCCCCcceeEEEeecCCCCCCCcccc--c-----ccc-cccccCCCCeEEEEEEecc
Q 005782 575 LTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQ--L-----VAF-EKVHVPAGAQQRVGINIHV 634 (677)
Q Consensus 575 ~~~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P~k~--L-----~gF-~kv~L~pGes~~V~~~l~~ 634 (677)
+..++++.|+=++. ++.=+|+|+--.|.+...++.. | +.+ ++..|+|||..+|+|+|.+
T Consensus 96 G~~~l~L~vs~~~~-d~~l~v~L~dv~pdG~~~~it~G~l~~s~r~~~~~~~~~~pg~~~~~~i~L~p 162 (218)
T PF08530_consen 96 GPPSLRLWVSSDAP-DADLFVRLSDVDPDGTSTLITRGWLRASHRESDEKPEPLEPGEPYDVTIELQP 162 (218)
T ss_dssp EEEEEEEEEEESSS-S-EEEEEEEEEETTSSEEEEEEEEEEGGGSSCSSST----TT-EEEEEEEEEE
T ss_pred cceEEEEEEEecCC-CcEEEEEEEEeCCCCCEEEccceEEEcccccCccccccCCCCcEEEEEEEEch
Confidence 34566666664444 4466677766666653322221 1 111 2235899999999999987
No 61
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=33.85 E-value=1.1e+02 Score=28.67 Aligned_cols=16 Identities=13% Similarity=0.293 Sum_probs=13.9
Q ss_pred ccCCCCeEEEEEEecc
Q 005782 619 HVPAGAQQRVGINIHV 634 (677)
Q Consensus 619 ~L~pGes~~V~~~l~~ 634 (677)
.|+|||+++++|+.+.
T Consensus 95 ~I~pGet~TitF~adK 110 (135)
T TIGR03096 95 VIKAGETKTISFKADK 110 (135)
T ss_pred EECCCCeEEEEEECCC
Confidence 4899999999998875
No 62
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=33.51 E-value=1.1e+02 Score=34.93 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=38.7
Q ss_pred eEEEEEEEEecCCCCcceeEEEeecCCCCCCCcccccc-cccccccCCCCeEEEEEEecc
Q 005782 576 TLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLV-AFEKVHVPAGAQQRVGINIHV 634 (677)
Q Consensus 576 ~~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P~k~L~-gF~kv~L~pGes~~V~~~l~~ 634 (677)
.-.+++.|+|+|...-+.+.-.|.. |.....|..+.. -+-.-.|.|||+..|+|.+..
T Consensus 168 ~~~l~~~I~N~G~~~~~~v~l~~~~-~~~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~ 226 (500)
T COG1361 168 TNTLTLTIKNPGEGPAKNVSLSLES-PTSYLGPIYSANDTPYIGALGPGESVNVTFSVYA 226 (500)
T ss_pred ccEEEEEEEeCCcccccceEEEEeC-CcceeccccccccceeeeeeCCCceEEEEEEEEe
Confidence 4489999999999877777666654 221112222222 123335899999999999987
No 63
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=32.81 E-value=27 Score=38.59 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=31.3
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCCCHHHH----HHHHHHHhhCCCCEEEEEecCceeecc
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQ----ELVSKVSMASKGPTILVLMSGGPIDVA 442 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~----~Li~~v~~~~~~pvVvVl~~g~P~~l~ 442 (677)
+..+++|+||++.|... .+|.+|.++ =..-. ++.+++.+..++..++ ++.++|+|+.
T Consensus 116 ~~~kdaDIVVitAG~pr---kpg~tR~dl--l~~N~~I~k~i~~~I~~~a~~~~iv-iVVsNPvDv~ 176 (387)
T TIGR01757 116 EVFEDADWALLIGAKPR---GPGMERADL--LDINGQIFADQGKALNAVASKNCKV-LVVGNPCNTN 176 (387)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCCeEE-EEcCCcHHHH
Confidence 45689999999888643 345555432 12222 3344454433233443 4446899873
No 64
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=32.64 E-value=30 Score=29.80 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=18.6
Q ss_pred CCcccccccccccccCCCCeEEEEEEecc
Q 005782 606 WAPHKQLVAFEKVHVPAGAQQRVGINIHV 634 (677)
Q Consensus 606 ~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 634 (677)
..|.--|+ .++.|+|||+++|.|-+-.
T Consensus 58 ~Dpc~al~--~~v~L~PGe~~~v~f~lG~ 84 (90)
T PF06205_consen 58 LDPCAALQ--VRVTLEPGEEKEVVFLLGA 84 (90)
T ss_dssp S-EEEEEE--EEEEE-TT-EEEEEEEEEE
T ss_pred cCeEEEEE--EEEEECCCCEEEEEEEEEE
Confidence 34666666 4789999999999998764
No 65
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=32.60 E-value=88 Score=32.42 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=33.4
Q ss_pred EEEEEEEecCCCCcceeEEEeecCCCCCCCccc----cccccccc-ccCCCCeEEEEEEec
Q 005782 578 GVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHK----QLVAFEKV-HVPAGAQQRVGINIH 633 (677)
Q Consensus 578 ~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P~k----~L~gF~kv-~L~pGes~~V~~~l~ 633 (677)
.++++|+|+|+. .-.||..+.+......|.. .+.-.==+ .|+||+.+.|+|-..
T Consensus 45 ~~sl~l~N~~~~--p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 45 SVDVQLKNNDAI--PYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred ceeEEEEcCCCC--cEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence 468888999986 5889988854332222211 12222223 478999988887654
No 66
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=30.93 E-value=54 Score=35.10 Aligned_cols=56 Identities=20% Similarity=0.406 Sum_probs=32.2
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCCCHHH---HHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ---QELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q---~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
+..+++|+||++.|... .++.+|.++ |+.+- .+..+++.+.+++ .++ ++..||+|+
T Consensus 63 ~~~~daDivvitaG~~~---~~g~~R~dl-l~~N~~I~~~i~~~i~~~~p~-~ii-ivvsNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPR---KPGMTRDDL-FNVNAGIVKDLVAAVAESCPK-AMI-LVITNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCC---CCCccHHHH-HHHhHHHHHHHHHHHHHhCCC-eEE-EEecCchhh
Confidence 45789999999998653 345555433 12111 3445556655444 343 344679984
No 67
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=30.46 E-value=1e+02 Score=20.98 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHH
Q 005782 234 LHTESAVQRGLLSEIDINNALVNTL 258 (677)
Q Consensus 234 ~~l~~av~~g~i~~~~id~av~RIL 258 (677)
..|.+...+|.||++..++.-.+||
T Consensus 6 ~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 5688899999999999999998887
No 68
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=30.23 E-value=1.6e+02 Score=29.51 Aligned_cols=40 Identities=10% Similarity=0.261 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCEEEEEecCCCcccccccccCCCCCCHHHHHHHHHHHhhCCC
Q 005782 376 GAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKG 427 (677)
Q Consensus 376 ~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~ 427 (677)
++.++....||.+|++..-. |+.+|..-...|+.|+.+ +|
T Consensus 79 d~l~~ef~aAD~vVi~~PM~-----------Nf~iPa~LK~yiD~i~~a-Gk 118 (202)
T COG1182 79 DKLLEEFLAADKVVIAAPMY-----------NFNIPAQLKAYIDHIAVA-GK 118 (202)
T ss_pred HHHHHHHHhcCeEEEEeccc-----------ccCCCHHHHHHHHHHhcC-Cc
Confidence 44566677899888776432 688999999999999864 44
No 69
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=29.86 E-value=1.3e+02 Score=30.66 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=32.3
Q ss_pred EEEEEEEecCCCCcceeEEEeecCCCCCCCcccccccccc-cccCCCCeEEEEEEec
Q 005782 578 GVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEK-VHVPAGAQQRVGINIH 633 (677)
Q Consensus 578 ~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~k-v~L~pGes~~V~~~l~ 633 (677)
.++++|+|+|+. .-.||..+.+......+...+.--== ..|+||+++.|+|...
T Consensus 36 ~~si~i~N~~~~--p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~ 90 (226)
T PRK15295 36 ESSINVENKDSK--ANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRS 90 (226)
T ss_pred eeEEEEEeCCCC--cEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEEC
Confidence 578999999986 58899988654311000000000001 2478999999987654
No 70
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=29.85 E-value=66 Score=24.71 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=17.8
Q ss_pred CeeEEEEEEEEecCCCCcceeEEE
Q 005782 574 RLTLGVQVDVKNVGSKDGAHTLLV 597 (677)
Q Consensus 574 ~~~~~v~v~V~NtG~~~G~eVvQl 597 (677)
++.++.+++|+|+|...-.. |++
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~-v~v 33 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATN-VVV 33 (53)
T ss_pred CCEEEEEEEEEECCCCceEe-EEE
Confidence 46899999999999976554 444
No 71
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=29.80 E-value=45 Score=35.91 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=30.7
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCCCHHH--HHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ--QELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q--~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
+..+++|+||++.|... .++.+|.++.-.... .++.+++.+..+...++++. ++|+|+
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 133 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVV-GNPANT 133 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHH
Confidence 45578999999988643 233444322111111 34445565543323444444 469977
No 72
>PRK05086 malate dehydrogenase; Provisional
Probab=29.58 E-value=47 Score=35.53 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=32.5
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCCCH---HHHHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLLPG---RQQELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~---~q~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
+..+++|+||++.|... .++.+|.++ |.. --.++++++.+.+++. + |++..||.|+
T Consensus 65 ~~l~~~DiVIitaG~~~---~~~~~R~dl-l~~N~~i~~~ii~~i~~~~~~~-i-vivvsNP~D~ 123 (312)
T PRK05086 65 PALEGADVVLISAGVAR---KPGMDRSDL-FNVNAGIVKNLVEKVAKTCPKA-C-IGIITNPVNT 123 (312)
T ss_pred HHcCCCCEEEEcCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHhCCCe-E-EEEccCchHH
Confidence 44578999999999753 233344332 111 2345677777665543 3 3345679964
No 73
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=29.32 E-value=60 Score=26.55 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=17.2
Q ss_pred CeeEEEEEEEEecCCCCcce
Q 005782 574 RLTLGVQVDVKNVGSKDGAH 593 (677)
Q Consensus 574 ~~~~~v~v~V~NtG~~~G~e 593 (677)
++.++.+++|+|+|...-..
T Consensus 40 Gd~v~ytitvtN~G~~~a~n 59 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPATN 59 (76)
T ss_pred CCEEEEEEEEEECCCCeeEe
Confidence 46899999999999988655
No 74
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=28.87 E-value=2.6e+02 Score=27.08 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=24.0
Q ss_pred hcCCEEEEEecCCCcccccccccCCCCCCHHHHHHHHHHHhhCCCCEEE
Q 005782 383 RQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTIL 431 (677)
Q Consensus 383 ~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVv 431 (677)
.+.|+||+.+|.+.... +.+. -.+-.+..++++.+.+. +..+|+
T Consensus 70 ~~pd~Vii~~GtND~~~--~~~~--~~~~~~l~~li~~~~~~-~~~~il 113 (191)
T PRK10528 70 HQPRWVLVELGGNDGLR--GFPP--QQTEQTLRQIIQDVKAA-NAQPLL 113 (191)
T ss_pred cCCCEEEEEeccCcCcc--CCCH--HHHHHHHHHHHHHHHHc-CCCEEE
Confidence 36799999999875321 1110 01123456778777654 333433
No 75
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=28.82 E-value=2.2e+02 Score=27.49 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=26.6
Q ss_pred hcCCEEEEEecCCCcccccccccCCCCCCHHHHHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 383 RQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 383 ~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
..+|+++|.+|. +.|..++.+..+..+.+ +++..|+.++.
T Consensus 100 ~~pdiv~vglG~-----------------PkQE~~~~~~~~~l~~~--v~i~vG~~~d~ 139 (172)
T PF03808_consen 100 SGPDIVFVGLGA-----------------PKQERWIARHRQRLPAG--VIIGVGGAFDF 139 (172)
T ss_pred cCCCEEEEECCC-----------------CHHHHHHHHHHHHCCCC--EEEEECchhhh
Confidence 467888888774 35888888888766655 33444655554
No 76
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=28.78 E-value=46 Score=35.82 Aligned_cols=56 Identities=21% Similarity=0.330 Sum_probs=31.4
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCCCHHH----HHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
+..+++|+||+..|... .++.+|.++ =..- .++.+++.+.+++..|+++. ++|+|+
T Consensus 71 ~~~~~aDiVVitAG~~~---~~~~tr~~l--l~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv 130 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR---KEGMERRDL--LSKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANT 130 (324)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 45688999999888653 234344322 1222 34555666543233554444 579987
No 77
>PLN02602 lactate dehydrogenase
Probab=28.07 E-value=44 Score=36.41 Aligned_cols=56 Identities=25% Similarity=0.398 Sum_probs=31.7
Q ss_pred HhhcCCEEEEEecCCCcccccccccCCCCCCHH--HHHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 381 ASRQADATILVMGLDQSIEAEALDRAGLLLPGR--QQELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 381 ~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~--q~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
..++||+||++.|... .+|.+|.++-.-.. -.++++++.+.+++ .++++. .+|.++
T Consensus 102 ~~~daDiVVitAG~~~---k~g~tR~dll~~N~~I~~~i~~~I~~~~p~-~ivivv-tNPvdv 159 (350)
T PLN02602 102 VTAGSDLCIVTAGARQ---IPGESRLNLLQRNVALFRKIIPELAKYSPD-TILLIV-SNPVDV 159 (350)
T ss_pred HhCCCCEEEECCCCCC---CcCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEe-cCchHH
Confidence 4689999999988653 34556643321110 12455566655554 444434 469987
No 78
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=27.24 E-value=46 Score=35.47 Aligned_cols=54 Identities=20% Similarity=0.422 Sum_probs=30.1
Q ss_pred hhcCCEEEEEecCCCcccccccccCCCCCCHHHH----HHHHHHHhhCCCCEEEEEecCceeecc
Q 005782 382 SRQADATILVMGLDQSIEAEALDRAGLLLPGRQQ----ELVSKVSMASKGPTILVLMSGGPIDVA 442 (677)
Q Consensus 382 a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~----~Li~~v~~~~~~pvVvVl~~g~P~~l~ 442 (677)
.+++|+||+++|.... ++.+|.+ |-.... +.++++.+.+++ .++++ ..||.++-
T Consensus 67 ~~~aDiVIitag~p~~---~~~sR~~--l~~~N~~iv~~i~~~I~~~~p~-~~iIv-~tNP~di~ 124 (305)
T TIGR01763 67 TANSDIVVITAGLPRK---PGMSRED--LLSMNAGIVREVTGRIMEHSPN-PIIVV-VSNPLDAM 124 (305)
T ss_pred hCCCCEEEEcCCCCCC---cCCCHHH--HHHHHHHHHHHHHHHHHHHCCC-eEEEE-ecCcHHHH
Confidence 5789999999997542 2334422 222233 344556655444 33333 35699873
No 79
>PRK00170 azoreductase; Reviewed
Probab=27.24 E-value=1.5e+02 Score=28.95 Aligned_cols=39 Identities=10% Similarity=0.217 Sum_probs=28.3
Q ss_pred hHHHHHHHhhcCCEEEEEecCCCcccccccccCCCCCCHHHHHHHHHHHh
Q 005782 374 LFGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSM 423 (677)
Q Consensus 374 ~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~ 423 (677)
...+..+..+.||.+|++.=.. ++.+|+.-..+|+.+..
T Consensus 76 ~~~~l~~~i~~AD~iV~~sP~y-----------~~~~pa~LK~~iDrv~~ 114 (201)
T PRK00170 76 LSDELLEEFLAADKIVIAAPMY-----------NFSIPTQLKAYIDLIAR 114 (201)
T ss_pred HHHHHHHHHHHCCEEEEeeccc-----------ccCCcHHHHHHHHhhee
Confidence 4566678888999888876322 46678877888888753
No 80
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=27.23 E-value=1e+02 Score=28.33 Aligned_cols=18 Identities=6% Similarity=0.147 Sum_probs=14.1
Q ss_pred HHHHHHhhcCCEEEEEec
Q 005782 376 GAAIDASRQADATILVMG 393 (677)
Q Consensus 376 ~~a~~~a~~aD~vIv~vg 393 (677)
.++.+.++.+|++++++-
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 456777899999888874
No 81
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=27.20 E-value=1.6e+02 Score=28.36 Aligned_cols=53 Identities=17% Similarity=0.085 Sum_probs=32.8
Q ss_pred hhHHHHHHHhhcCCEEEEEecCCCcccccccccCCCCCCHHHHHHHHHHHh--hCCCCEEEEEecC
Q 005782 373 QLFGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSM--ASKGPTILVLMSG 436 (677)
Q Consensus 373 ~~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~--~~~~pvVvVl~~g 436 (677)
+.+.+..+...+||.+|++.-+. +...|+.-..+|+.+.. -.+||++++..+|
T Consensus 57 ~~~~~~~~~i~~AD~iIi~tP~Y-----------~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~g 111 (174)
T TIGR03566 57 PDAERILQAIESADLLVVGSPVY-----------RGSYTGLFKHLFDLVDPNALIGKPVLLAATGG 111 (174)
T ss_pred HHHHHHHHHHHHCCEEEEECCcC-----------cCcCcHHHHHHHHhcCHhHhCCCEEEEEEecC
Confidence 44667778889999888776332 34567666667776531 2356666554433
No 82
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=26.93 E-value=3e+02 Score=30.75 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=34.5
Q ss_pred hhhHHHHHHHhhc--CCEEEEEecCCCcccccccccCCCCCCHHHHHHHHHHHhhCCCCEEEEEecCceeecc
Q 005782 372 DQLFGAAIDASRQ--ADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVA 442 (677)
Q Consensus 372 ~~~~~~a~~~a~~--aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvVl~~g~P~~l~ 442 (677)
...+.+|++.+.. .|++|++=|.- ...+|- +=+..+++++|++ ++.|||.- -|-=.|.+
T Consensus 178 ~~~i~~al~~~~~~~~Dviii~RGGG--------S~eDL~-~Fn~e~v~~ai~~-~~~Pvis~--IGHE~D~t 238 (438)
T PRK00286 178 AASIVAAIERANARGEDVLIVARGGG--------SLEDLW-AFNDEAVARAIAA-SRIPVISA--VGHETDFT 238 (438)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCCC--------CHHHhh-ccCcHHHHHHHHc-CCCCEEEe--ccCCCCcc
Confidence 3456666666655 59888775532 122221 2257789999996 78896532 35444443
No 83
>PLN02303 urease
Probab=26.87 E-value=80 Score=38.17 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=31.6
Q ss_pred EEEEEEEEecCCCCcceeEEEeecCCCCCCCc-----ccccccc-------cccccCCCCeEEEEEE
Q 005782 577 LGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAP-----HKQLVAF-------EKVHVPAGAQQRVGIN 631 (677)
Q Consensus 577 ~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P-----~k~L~gF-------~kv~L~pGes~~V~~~ 631 (677)
=+++++|+|||+|+ ||+=-+...-...| ...=.|| .-|..+|||+|+|++.
T Consensus 150 ~~~~l~v~n~gdrp----iqvgSH~hf~e~N~aL~FdR~~a~G~rLdipaGtavRfePG~~~~V~lv 212 (837)
T PLN02303 150 KAVKLKVTNTGDRP----IQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVTLV 212 (837)
T ss_pred CeEEEEEeeCCCCc----eEeccccchHhcCchhhccHHHhcCccccCCCCCeEeECCCCeeEEEEE
Confidence 35899999999997 88743332211111 1111122 3466789999999986
No 84
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=26.47 E-value=40 Score=37.96 Aligned_cols=56 Identities=20% Similarity=0.320 Sum_probs=31.6
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCCCHHH----HHHHHHHHh-hCCCCEEEEEecCceeecc
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSM-ASKGPTILVLMSGGPIDVA 442 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~v~~-~~~~pvVvVl~~g~P~~l~ 442 (677)
+..++||+||+..|... .+|.+|.++- ..- .+..+++.+ +.+ ..++ ++.+||+|+.
T Consensus 172 e~~kdaDiVVitAG~pr---kpG~tR~dLl--~~N~~I~k~i~~~I~~~a~p-~~iv-IVVsNPvDv~ 232 (444)
T PLN00112 172 EVFQDAEWALLIGAKPR---GPGMERADLL--DINGQIFAEQGKALNEVASR-NVKV-IVVGNPCNTN 232 (444)
T ss_pred HHhCcCCEEEECCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhcCC-CeEE-EEcCCcHHHH
Confidence 45689999999887643 3555664321 112 234445554 333 3443 3446899873
No 85
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=26.29 E-value=55 Score=35.03 Aligned_cols=55 Identities=18% Similarity=0.382 Sum_probs=32.1
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCCCHHH----HHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
+..+++|+||++.|... .+|.+|.++ =..- .+.++++.+.+++ .+++ +..||+|+
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~p~-a~vi-vvtNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDDL--FNINAGIVRDLATAVAKACPK-ALIL-IISNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCC-eEEE-EccCchhh
Confidence 45789999999998753 234455332 1112 3455566665544 4433 44569987
No 86
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=25.89 E-value=60 Score=34.62 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=30.0
Q ss_pred HhhcCCEEEEEecCCCcccccccccCCCCCC--HHHHHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 381 ASRQADATILVMGLDQSIEAEALDRAGLLLP--GRQQELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 381 ~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp--~~q~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
..+++|+||+++|... .++.+|.++-.- .--.+.++++.+.+++ .++++ .++|+++
T Consensus 69 ~l~~aDiViitag~p~---~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~-~~viv-~~npvd~ 126 (309)
T cd05294 69 DVAGSDIVIITAGVPR---KEGMSRLDLAKKNAKIVKKYAKQIAEFAPD-TKILV-VTNPVDV 126 (309)
T ss_pred HhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEE-eCCchHH
Confidence 4789999999998753 344444322000 0113344455554444 33333 3479876
No 87
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=25.43 E-value=1.4e+02 Score=30.69 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=32.7
Q ss_pred EEEEEEEecCCCCcceeEEEeecCCCCCCCccccccccc---cc-ccCCCCeEEEEEEec
Q 005782 578 GVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFE---KV-HVPAGAQQRVGINIH 633 (677)
Q Consensus 578 ~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~---kv-~L~pGes~~V~~~l~ 633 (677)
.++++|+|+|+. .-.+|..+.+......|...=..|- -+ .|+||+.+.|+|-..
T Consensus 42 ~~sv~l~N~~~~--p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~ 99 (246)
T PRK09926 42 DVNVRLENKGNN--PLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYT 99 (246)
T ss_pred eEEEEEEeCCCC--cEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeC
Confidence 578888999986 5889998864332222211101122 12 478888888887654
No 88
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=25.25 E-value=88 Score=35.69 Aligned_cols=47 Identities=19% Similarity=0.189 Sum_probs=33.2
Q ss_pred hhcccccCcEEEcCCcccccccccccccCCHHHHHHHHHHhCCCCCCc
Q 005782 182 IRGEWRLNGYIVSDCDSVGVYYDTQHFTSTPEEAAADAIRAGLDLDCG 229 (677)
Q Consensus 182 LR~e~gF~G~VvSD~~~m~~~~~~~~~~~~~~ea~~~al~AG~D~~~~ 229 (677)
|++=+||+|.|+||.++-+.+.-.. ..-++++...---.-|.|+.|.
T Consensus 75 lh~f~~w~g~ilTDSGgfQv~s~g~-~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 75 LHKLLGFDGPIMTDSGSYQLLVYGD-VEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred HHHHhCCCCCeEeccCCcEEEEcCC-ccCCHHHHHHHHHHhCCCEEeE
Confidence 6677899999999999876443221 2236666665556679999874
No 89
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=25.13 E-value=3.8e+02 Score=25.76 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=27.6
Q ss_pred hhcCCEEEEEecCCCcccccccccCCCCCCHHHHHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 382 SRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 382 a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
..++|+|+|++|. +.|+.++.+..+..+.++ ++..|+.+|.
T Consensus 97 ~~~pdiv~vglG~-----------------PkQE~~~~~~~~~l~~~v--~~~vG~~~d~ 137 (171)
T cd06533 97 ASGADILFVGLGA-----------------PKQELWIARHKDRLPVPV--AIGVGGSFDF 137 (171)
T ss_pred HcCCCEEEEECCC-----------------CHHHHHHHHHHHHCCCCE--EEEeceeeEe
Confidence 3468988888874 358899998887654433 3344656654
No 90
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=25.03 E-value=1.7e+02 Score=31.90 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=32.6
Q ss_pred CeeEEEEEEEEecCCCCcceeEEE------eecCCCC----C--CCccccccc--cc---ccccCCCCeEEEEEEecc
Q 005782 574 RLTLGVQVDVKNVGSKDGAHTLLV------FSTPPAG----H--WAPHKQLVA--FE---KVHVPAGAQQRVGINIHV 634 (677)
Q Consensus 574 ~~~~~v~v~V~NtG~~~G~eVvQl------Yv~~~~~----~--~~P~k~L~g--F~---kv~L~pGes~~V~~~l~~ 634 (677)
+..++++++|||.|+-+ |.| =+++.++ . ..=.++|.+ -. ..-|.|||+++|+++...
T Consensus 281 GR~l~~~~~VTN~g~~~----vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 281 GRALRVTMEITNNGDQV----ISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred CcEEEEEEEEEcCCCCc----eEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEeh
Confidence 46799999999998743 332 1111111 1 111223322 21 234899999999998753
No 91
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=24.89 E-value=2.6e+02 Score=23.69 Aligned_cols=64 Identities=22% Similarity=0.212 Sum_probs=40.3
Q ss_pred eeEEEEEEEEecCCCCcceeEEEeecCCCCCCCcccccccccccccCCCCeEEEEEEeccCCCeeEEcC
Q 005782 575 LTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDR 643 (677)
Q Consensus 575 ~~~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~ 643 (677)
..++|.+++.|.+.....-.+++.+......... . .-..+.+..++...+.+++.. .....|+.
T Consensus 18 ~~v~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~i-~~~~lW~p 81 (110)
T PF00703_consen 18 AKVSVEVEVRNESNKPLDVTVRVRLFDPEGKKVV--T--QSPVVSLSAPGQARITLTIEI-PNPKLWSP 81 (110)
T ss_dssp EEEEEEEEEEEESSSSCEEEEEEEEEETTSEEEE--E--EEEEEEECCCCEEEEEEEEEE-ESS-BBES
T ss_pred EEEEEEEEEEeCCCCcEEEEEEEEEECCCCCEEE--E--eeeEEEecCCceeEEEEEEEc-CCCCCcCC
Confidence 4677888889999999988899888776542111 1 112334566666666455554 34677776
No 92
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=24.64 E-value=4.2e+02 Score=25.01 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=15.1
Q ss_pred hHHHHHHHhhcCCEEEEEecC
Q 005782 374 LFGAAIDASRQADATILVMGL 394 (677)
Q Consensus 374 ~~~~a~~~a~~aD~vIv~vg~ 394 (677)
........+.+||+|+++...
T Consensus 53 ~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 53 FYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred HHHHHHHHHhhCCEEEEEecC
Confidence 345556678899998888753
No 93
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=24.36 E-value=1.2e+02 Score=26.45 Aligned_cols=18 Identities=28% Similarity=0.113 Sum_probs=14.6
Q ss_pred CCeeEEEEEEEEecCCCC
Q 005782 573 NRLTLGVQVDVKNVGSKD 590 (677)
Q Consensus 573 ~~~~~~v~v~V~NtG~~~ 590 (677)
+++.+..+|+|+|.|+.+
T Consensus 11 W~~Gf~~~v~v~N~~~~~ 28 (101)
T PF00553_consen 11 WGGGFQGEVTVTNNGSSP 28 (101)
T ss_dssp SSSEEEEEEEEEESSSST
T ss_pred cCCCeEEEEEEEECCCCc
Confidence 445688999999999865
No 94
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=24.27 E-value=1.7e+02 Score=29.68 Aligned_cols=54 Identities=6% Similarity=0.086 Sum_probs=32.4
Q ss_pred EEEEEEEecCCCCcceeEEEeecCCCC-CCCccccccccccc-ccCCCCeEEEEEEec
Q 005782 578 GVQVDVKNVGSKDGAHTLLVFSTPPAG-HWAPHKQLVAFEKV-HVPAGAQQRVGINIH 633 (677)
Q Consensus 578 ~v~v~V~NtG~~~G~eVvQlYv~~~~~-~~~P~k~L~gF~kv-~L~pGes~~V~~~l~ 633 (677)
.++++|+|+|+. .-.+|..+.+... ...+...+.-.=-+ .|+||+++.++|-..
T Consensus 39 ~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~ 94 (227)
T PRK15299 39 DASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRT 94 (227)
T ss_pred EEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEEC
Confidence 578899999985 6889988865321 00010011111122 478999999887654
No 95
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=24.02 E-value=50 Score=35.11 Aligned_cols=55 Identities=25% Similarity=0.440 Sum_probs=32.0
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCCCHHH----HHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
+..++||+||++.|... .+|.+|.++ =..- .++.+++.+.+++ .+ |++.++|.++
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dl--l~~N~~i~~~~~~~i~~~~p~-~~-vivvsNP~d~ 118 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLEL--VGRNVRIMKSIVPEVVKSGFD-GI-FLVATNPVDI 118 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCC-eE-EEEeCCHHHH
Confidence 45689999999888643 345566432 1112 3455566665443 44 3444679876
No 96
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=23.99 E-value=1.6e+02 Score=29.98 Aligned_cols=51 Identities=8% Similarity=0.078 Sum_probs=31.6
Q ss_pred EEEEEEEecCCCCcceeEEEeecCCCCCCCcccccccccc----cccCCCCeEEEEEEecc
Q 005782 578 GVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEK----VHVPAGAQQRVGINIHV 634 (677)
Q Consensus 578 ~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~k----v~L~pGes~~V~~~l~~ 634 (677)
.++++|+|+++. ..-.||..+.+......+ .|-= ..|+||++++++|-...
T Consensus 44 ~~sv~i~N~~~~-~p~LvQsWv~~~~~~~~~-----pFivtPPlfrl~~~~~~~lRI~~~~ 98 (228)
T PRK15188 44 QTSLPIINSSAS-NVFLIQSWVANADGSRST-----DFIITPPLFVIQPKKENILRIMYVG 98 (228)
T ss_pred eEEEEEEeCCCC-ccEEEEEEEecCCCCccC-----CEEEcCCeEEECCCCceEEEEEECC
Confidence 578999998852 235699988654331100 1211 24788999988877653
No 97
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=23.96 E-value=1.2e+02 Score=26.91 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=27.8
Q ss_pred CeeEEEEEEEEecCCCCccee-EEEeecCCCCC-CCccc----ccccccccccCCCCeEEEEEEec
Q 005782 574 RLTLGVQVDVKNVGSKDGAHT-LLVFSTPPAGH-WAPHK----QLVAFEKVHVPAGAQQRVGINIH 633 (677)
Q Consensus 574 ~~~~~v~v~V~NtG~~~G~eV-vQlYv~~~~~~-~~P~k----~L~gF~kv~L~pGes~~V~~~l~ 633 (677)
..-+.|+++|+|+|+-+-.-- .+..+.+..+. -.|.. ....+.-..|+||++.+..+-..
T Consensus 35 ~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~ 100 (123)
T PF11611_consen 35 NKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFE 100 (123)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEE
T ss_pred CEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEE
Confidence 356899999999987544211 13334344331 11211 11114556799999988554433
No 98
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=23.85 E-value=2.3e+02 Score=28.84 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=35.7
Q ss_pred EEEEEEEecCCCCcceeEEEeecCCCCCCCccccccccccc----ccCCCCeEEEEEEec
Q 005782 578 GVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEKV----HVPAGAQQRVGINIH 633 (677)
Q Consensus 578 ~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~kv----~L~pGes~~V~~~l~ 633 (677)
.++++|+|.|+. .-.||..+.+......|.+.=.-|-=+ .|+||+.++++|...
T Consensus 35 ~~si~i~N~~~~--pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~ 92 (226)
T PRK15218 35 DITVQLMNDGKR--SSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKL 92 (226)
T ss_pred EEEEEEEcCCCC--cEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEEC
Confidence 578888999986 599999998654221121110123322 478999999998864
No 99
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=23.65 E-value=2.5e+02 Score=26.10 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=38.1
Q ss_pred eeEEEEEEEEecCCCCcc-eeEEEeecCCCCC------CCcccccccc--cccccCCCCeEEEEEEecc
Q 005782 575 LTLGVQVDVKNVGSKDGA-HTLLVFSTPPAGH------WAPHKQLVAF--EKVHVPAGAQQRVGINIHV 634 (677)
Q Consensus 575 ~~~~v~v~V~NtG~~~G~-eVvQlYv~~~~~~------~~P~k~L~gF--~kv~L~pGes~~V~~~l~~ 634 (677)
+.+.|+.+++|+++.+=. =.+++-+.+..+. ..|..-|..- .+..|+||++.++++.+..
T Consensus 68 ~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 68 GVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred CEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 578999999999986432 1234444444431 2353334432 2456999999999998874
No 100
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=23.39 E-value=57 Score=34.68 Aligned_cols=55 Identities=24% Similarity=0.412 Sum_probs=31.4
Q ss_pred HhhcCCEEEEEecCCCcccccccccCCCCCCHHH----HHHHHHHHhhCCCCEEEEEecCceeecc
Q 005782 381 ASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDVA 442 (677)
Q Consensus 381 ~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~v~~~~~~pvVvVl~~g~P~~l~ 442 (677)
.++++|++|++.|... .+|.+|.++ =..- .+..+++.+.+++ .+ |++.++|+++.
T Consensus 65 ~l~~aDIVIitag~~~---~~g~~R~dl--l~~N~~i~~~~~~~i~~~~~~-~~-vivvsNP~d~~ 123 (306)
T cd05291 65 DCKDADIVVITAGAPQ---KPGETRLDL--LEKNAKIMKSIVPKIKASGFD-GI-FLVASNPVDVI 123 (306)
T ss_pred HhCCCCEEEEccCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCC-eE-EEEecChHHHH
Confidence 3579999999998653 345566432 1122 2344555554543 44 33445799873
No 101
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=23.13 E-value=4.2e+02 Score=29.72 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=33.3
Q ss_pred hhHHHHHHHhhc---CCEEEEEecCCCcccccccccCCCCCCHHHHHHHHHHHhhCCCCEEEEEecCceeecc
Q 005782 373 QLFGAAIDASRQ---ADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDVA 442 (677)
Q Consensus 373 ~~~~~a~~~a~~---aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvVl~~g~P~~l~ 442 (677)
..+.+|++.+.. .|++||+=|..+ ..+| .+=+...+++++++ ++.|||. --|-=.|.+
T Consensus 173 ~~i~~al~~~~~~~~~dviii~RGGGs--------~eDL-~~Fn~e~~~rai~~-~~~Pvis--~iGHe~D~t 233 (432)
T TIGR00237 173 QSIVESIELANTKNECDVLIVGRGGGS--------LEDL-WSFNDEKVARAIFL-SKIPIIS--AVGHETDFT 233 (432)
T ss_pred HHHHHHHHHhhcCCCCCEEEEecCCCC--------HHHh-hhcCcHHHHHHHHc-CCCCEEE--ecCcCCCcc
Confidence 445556654443 698887765321 1122 12356789999985 7889753 235444443
No 102
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=22.99 E-value=95 Score=34.29 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=43.0
Q ss_pred HHHHHHHHhhCCCCEEEEEec-CceeecccccCC-------CCccEEEEccCCCchhHHHHHHHHcCCC
Q 005782 415 QELVSKVSMASKGPTILVLMS-GGPIDVAFAKND-------PRIAAIIWAGYPGQAGGTAIADILFGTS 475 (677)
Q Consensus 415 ~~Li~~v~~~~~~pvVvVl~~-g~P~~l~~~~~~-------~~v~AiL~a~~~G~e~g~AiAdvL~G~~ 475 (677)
.++|+.+.+.+++||++|.++ |+++..-++... ..|+.+|...-|-.-+.+|+..+++|+.
T Consensus 107 k~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~Gs~~a~~~~~sG~~ 175 (389)
T PF02450_consen 107 KQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFGGSPKALRALLSGDN 175 (389)
T ss_pred HHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCCCChHHHHHHhhhhh
Confidence 467777776678899999887 777665333221 3588888766665566789999999983
No 103
>PTZ00325 malate dehydrogenase; Provisional
Probab=22.91 E-value=63 Score=34.79 Aligned_cols=57 Identities=19% Similarity=0.329 Sum_probs=33.8
Q ss_pred HHHhhcCCEEEEEecCCCcccccccccCCCCCCH---HHHHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 379 IDASRQADATILVMGLDQSIEAEALDRAGLLLPG---RQQELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 379 ~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~---~q~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
.+..+.+|+||++.|... .++.+|.++ |.. .-.++++++.+.+.+.+ + +...+|++.
T Consensus 71 ~~~l~gaDvVVitaG~~~---~~~~tR~dl-l~~N~~i~~~i~~~i~~~~~~~i-v-iv~SNPvdv 130 (321)
T PTZ00325 71 EKALRGADLVLICAGVPR---KPGMTRDDL-FNTNAPIVRDLVAAVASSAPKAI-V-GIVSNPVNS 130 (321)
T ss_pred HHHhCCCCEEEECCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHHCCCeE-E-EEecCcHHH
Confidence 356789999999998653 223344333 222 23456777776655543 3 344569887
No 104
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=22.44 E-value=1.4e+02 Score=31.58 Aligned_cols=119 Identities=16% Similarity=0.257 Sum_probs=58.7
Q ss_pred HHHHHHhhcceEEeecCCC--CCCCCCCCCCeEEEECcCCCccccccccccccCCccCCHHHHHhhcee-EE---EecCc
Q 005782 291 ELALEAARQGIVLLKNQGP--SLPLSHIRHRTVAVIGPNSDVTVTMIGNYAGIACGYTTPLQGIGRYAR-TI---HQQGC 364 (677)
Q Consensus 291 ~la~~~A~~sivLLKN~~~--~LPL~~~~~~kIaviGp~a~~~~~~~g~~~~~~~~~~t~~~~l~~~~~-v~---y~~g~ 364 (677)
.+.-.+-.+...+++|... -||+.. .++++++.....+. . .+..+.+.|++... .. +..-|
T Consensus 127 gi~g~~~~~~~~vv~~~~~~~~l~~~~--~~kv~vvsQTT~~~----~-------~~~~i~~~l~~~~~~~~~~~~nTIC 193 (281)
T PF02401_consen 127 GILGYAPEEKAIVVESPEDVEKLPISD--PKKVAVVSQTTQSV----E-------KFEEIVEALKKRFPELEGPVFNTIC 193 (281)
T ss_dssp HHHCCHHTS-EEEESSHHHHHHGGGSS--TTCEEEEE-TTS-H----H-------HHHHHHHHHHHHSTCEE-SCC-S--
T ss_pred EecccccCCceEEeCChhhhcccCCCC--CCeEEEEEeecccH----H-------HHHHHHHHHHHhCccccCCCCCCCC
Confidence 3333333466777776433 367654 46899986322111 0 11234566666542 21 22222
Q ss_pred CccCCCChhhHHHHHHHhhcCCEEEEEecCCCcccccccccCCCCCCHHHHHHHHHHHhhCCCCEEEEEecCceeec--c
Q 005782 365 KDVACADDQLFGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVSMASKGPTILVLMSGGPIDV--A 442 (677)
Q Consensus 365 ~~~~~~~~~~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~~~~~~pvVvVl~~g~P~~l--~ 442 (677)
. .+..--+++.++++..|++||+-|.++ .+-.+|.+ +++..++|+..| - ++=++ .
T Consensus 194 ~----aT~~RQ~a~~~La~~vD~miVIGg~~S---------------sNT~kL~e-ia~~~~~~t~~I-e--~~~el~~~ 250 (281)
T PF02401_consen 194 Y----ATQNRQEAARELAKEVDAMIVIGGKNS---------------SNTRKLAE-IAKEHGKPTYHI-E--TADELDPE 250 (281)
T ss_dssp C----HHHHHHHHHHHHHCCSSEEEEES-TT----------------HHHHHHHH-HHHHCTTCEEEE-S--SGGG--HH
T ss_pred H----hHHHHHHHHHHHHhhCCEEEEecCCCC---------------ccHHHHHH-HHHHhCCCEEEe-C--CccccCHh
Confidence 1 123334566778999998777654332 34566666 444455677654 2 34444 4
Q ss_pred ccc
Q 005782 443 FAK 445 (677)
Q Consensus 443 ~~~ 445 (677)
|+.
T Consensus 251 ~l~ 253 (281)
T PF02401_consen 251 WLK 253 (281)
T ss_dssp HHT
T ss_pred HhC
Confidence 664
No 105
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=21.97 E-value=56 Score=34.91 Aligned_cols=57 Identities=18% Similarity=0.363 Sum_probs=31.1
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCCCHHHH----HHHHHHHhhCCCCEEEEEecCceeec
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQ----ELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~----~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
+..++||+||++.|... ..|.+|..++|=..-. +.++++.+.+++ .+++ +..||+|+
T Consensus 64 ~~~~~aDivvitaG~~~---kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~-~i~i-vvsNPvDv 124 (307)
T cd05290 64 DDCADADIIVITAGPSI---DPGNTDDRLDLAQTNAKIIREIMGNITKVTKE-AVII-LITNPLDI 124 (307)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCC-eEEE-EecCcHHH
Confidence 45689999999988643 2333321122222233 345556555544 3433 34569987
No 106
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=21.76 E-value=71 Score=34.20 Aligned_cols=55 Identities=22% Similarity=0.411 Sum_probs=31.6
Q ss_pred HHhhcCCEEEEEecCCCcccccccccCCCCCCHHH----HHHHHHHHhhCCCCEEEEEecCceeec
Q 005782 380 DASRQADATILVMGLDQSIEAEALDRAGLLLPGRQ----QELVSKVSMASKGPTILVLMSGGPIDV 441 (677)
Q Consensus 380 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~v~~~~~~pvVvVl~~g~P~~l 441 (677)
+..++||+||++.|... .+|.+|.++ =..- .++++++.+.+++ .++ ++.++|.++
T Consensus 69 ~~~~~adivIitag~~~---k~g~~R~dl--l~~N~~i~~~i~~~i~~~~~~-~~v-ivvsNP~d~ 127 (315)
T PRK00066 69 SDCKDADLVVITAGAPQ---KPGETRLDL--VEKNLKIFKSIVGEVMASGFD-GIF-LVASNPVDI 127 (315)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCC-eEE-EEccCcHHH
Confidence 34689999999988643 345555432 1112 3345556655544 333 344579986
No 107
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=21.70 E-value=2.1e+02 Score=29.50 Aligned_cols=54 Identities=24% Similarity=0.259 Sum_probs=35.0
Q ss_pred EEEEEEEecCCCCcceeEEEeecCCCCCCCccccccccccc----ccCCCCeEEEEEEec
Q 005782 578 GVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEKV----HVPAGAQQRVGINIH 633 (677)
Q Consensus 578 ~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~kv----~L~pGes~~V~~~l~ 633 (677)
.++++|+|+++. .-.||..+.+......|.+.-.-|-=+ .|+||+.++++|...
T Consensus 50 ~~sv~i~N~~~~--pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~ 107 (242)
T PRK15253 50 EVVVQLVNQGEQ--ASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKM 107 (242)
T ss_pred eEEEEEEcCCCC--cEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEEC
Confidence 578888999986 699999998654221121111123322 478999999999743
No 108
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=21.21 E-value=64 Score=25.32 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=8.3
Q ss_pred eeCeEEEEEEe
Q 005782 649 IPLGEHNIHIG 659 (677)
Q Consensus 649 ~e~G~y~i~vG 659 (677)
++||+|+|.|-
T Consensus 36 L~~G~Y~l~V~ 46 (66)
T PF07495_consen 36 LPPGKYTLEVR 46 (66)
T ss_dssp --SEEEEEEEE
T ss_pred CCCEEEEEEEE
Confidence 47999999996
No 109
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=21.09 E-value=1.3e+02 Score=20.78 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=22.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhcC
Q 005782 242 RGLLSEIDINNALVNTLTVQMRLGM 266 (677)
Q Consensus 242 ~g~i~~~~id~av~RIL~~k~~~Gl 266 (677)
.|.|+.+.+-+++.||+..+.+.|-
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngR 26 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGR 26 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999988764
No 110
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=20.98 E-value=3.2e+02 Score=31.12 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=43.7
Q ss_pred CeeEEEEEEEEecCCCCcceeEEEeecCCCCCCCcccccccccccccCCCCeEEEEEEeccCCCeeEEcCCCcEEeeCeE
Q 005782 574 RLTLGVQVDVKNVGSKDGAHTLLVFSTPPAGHWAPHKQLVAFEKVHVPAGAQQRVGINIHVCKYLSVVDRSGTRRIPLGE 653 (677)
Q Consensus 574 ~~~~~v~v~V~NtG~~~G~eVvQlYv~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~e~G~ 653 (677)
++.+++.++|+-+|++ -|.+||-+. .++.+++.+..|.-+. +.|++.|.. - ++|.
T Consensus 326 dG~~~i~ftv~a~g~~----~vta~V~d~------~g~~~~~~~~~v~d~s-~~vtL~Ls~-~-------------~AG~ 380 (478)
T PRK13211 326 DGAATLDFTVTATGDM----NVEATVYNH------DGEALGSKSQTVNDGS-QSVSLDLSK-L-------------KAGH 380 (478)
T ss_pred CCcEEEEEEEEeccce----EEEEEEEcC------CCCeeeeeeEEecCCc-eeEEEeccc-C-------------CCce
Confidence 3568899999988865 466666553 3477888888887766 888888875 2 5677
Q ss_pred EEEEEe
Q 005782 654 HNIHIG 659 (677)
Q Consensus 654 y~i~vG 659 (677)
|.|.|=
T Consensus 381 y~Lvv~ 386 (478)
T PRK13211 381 HMLVVK 386 (478)
T ss_pred EEEEEE
Confidence 776664
No 111
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=20.76 E-value=2e+02 Score=26.52 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=28.6
Q ss_pred ChhhHHHHHHHhhcCCEEEEEecCCCcccccccccCCCCCCHHHHHHHHHHH
Q 005782 371 DDQLFGAAIDASRQADATILVMGLDQSIEAEALDRAGLLLPGRQQELVSKVS 422 (677)
Q Consensus 371 ~~~~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~v~ 422 (677)
..+.+++..+..++||.+|++.-.. ....|+.-..+++.+.
T Consensus 57 ~~d~~~~~~~~l~~aD~iI~~sP~y-----------~~~~s~~lK~~lD~~~ 97 (152)
T PF03358_consen 57 IPDDVQELYDKLKEADGIIFASPVY-----------NGSVSGQLKNFLDRLS 97 (152)
T ss_dssp TSHHHHHHHHHHHHSSEEEEEEEEB-----------TTBE-HHHHHHHHTHH
T ss_pred CcHHHHHHHhceecCCeEEEeecEE-----------cCcCChhhhHHHHHhc
Confidence 4567788889999999988876332 2345666677777774
No 112
>PHA00691 hypothetical protein
Probab=20.03 E-value=1.1e+02 Score=23.98 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=14.4
Q ss_pred CCCc-EEee-CeEEEEEEeC
Q 005782 643 RSGT-RRIP-LGEHNIHIGG 660 (677)
Q Consensus 643 ~~~~-~~~e-~G~y~i~vG~ 660 (677)
++|+ |+++ .|.|+++|.+
T Consensus 11 ENGr~WVL~K~~~Y~V~vSG 30 (68)
T PHA00691 11 ENGRVWVLKKSDSYTVFVSG 30 (68)
T ss_pred cCCeEEEEEeCCcEEEEEec
Confidence 4554 9987 8999999985
Done!