BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005783
(677 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 4 INLLGNSTMKLSGRFLIPCRNASFSAF----IVIKHPNHHCLSNKSSTFCF 50
+ +LG ST +LS IP + + F I I NHHCL + S+ FCF
Sbjct: 132 VPILGEST-RLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCF 181
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 4 INLLGNSTMKLSGRFLIPCRNASFSAF----IVIKHPNHHCLSNKSSTFCF 50
+ +LG ST +LS IP + + F I I NHHCL + S+ FCF
Sbjct: 132 VPILGEST-RLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCF 181
>pdb|2WU8|A Chain A, Structural Studies Of Phosphoglucose Isomerase From
Mycobacterium Tuberculosis H37rv
Length = 549
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 377 GIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVDM-- 434
G+H + E +A+ +TALR R+ V DG V A+ + + A + +R W
Sbjct: 81 GVHINTSEDRAVLHTALRLPRDAELVVDGQDVVTDVHAVLDAMGAFTDRLRSGEWTGATG 140
Query: 435 KKINEI 440
K+I+ +
Sbjct: 141 KRISTV 146
>pdb|2C7T|A Chain A, Crystal Structure Of The Plp-Bound Form Of Btrr, A Dual
Functional Aminotransferase Involved In Butirosin
Biosynthesis.
pdb|2C81|A Chain A, Crystal Structures Of The Plp- And Pmp-Bound Forms Of
Btrr, A Dual Functional Aminotransferase Involved In
Butirosin Biosynthesis
Length = 418
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 594 LPLDHWPEY--YDTRTGRFTGKQSRLFQT--WTIAGFLTSKMLVE 634
+P DHWPE+ + RT R K +FQ+ W I+G+ T + +E
Sbjct: 3 IPFDHWPEWPQHSDRTRR---KIEEVFQSNRWAISGYWTGEESME 44
>pdb|3EXW|A Chain A, Crystal Structure Of The Human Adenovirus Type 7 Fiber
Knob
pdb|3EXW|B Chain B, Crystal Structure Of The Human Adenovirus Type 7 Fiber
Knob
pdb|3EXW|C Chain C, Crystal Structure Of The Human Adenovirus Type 7 Fiber
Knob
Length = 213
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 491 FFTLGNLWSIVSSLGTPKQNESILNLIEAKWDDLVGHMPLKICYP 535
F + GNL + +SSL TP ++S N+ + G MP YP
Sbjct: 87 FDSTGNLLTSLSSLKTPLNHKSGQNMATGALTNAKGFMPSTTAYP 131
>pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase
(Mmp1) Reveals A C-Terminal Domain Containing A
Calcium-Linked, Four-Bladed Beta- Propeller
Length = 370
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 65 ISGFQRILKDTQKPLCVFGPSCGQIRVNSRPFSVVSTKSRGLYLVASRVASNVSSFSTSV 124
I G Q I ++ P+ GP Q+ + F ++T L R +SF V
Sbjct: 154 IDGIQAIYGPSENPVQPSGPQTPQVCDSKLTFDAITTLRGELMFFKDRFYMRTNSFYPEV 213
Query: 125 ETRVNDGNFERIY---VQNGLNVKPLVVERIDKDE 156
E NF ++ V NGL E D+DE
Sbjct: 214 EL-----NFISVFWPQVPNGLQA---AYEIADRDE 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,762,536
Number of Sequences: 62578
Number of extensions: 884095
Number of successful extensions: 1661
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1657
Number of HSP's gapped (non-prelim): 10
length of query: 677
length of database: 14,973,337
effective HSP length: 105
effective length of query: 572
effective length of database: 8,402,647
effective search space: 4806314084
effective search space used: 4806314084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)