Query 005784
Match_columns 677
No_of_seqs 216 out of 1212
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 07:21:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005784.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005784hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2olm_A Nucleoporin-like protei 100.0 9.8E-40 3.3E-44 306.6 11.4 124 2-125 3-128 (140)
2 2iqj_A Stromal membrane-associ 100.0 1.1E-37 3.7E-42 290.9 7.3 119 4-125 7-128 (134)
3 2crr_A Stromal membrane-associ 100.0 1.3E-37 4.6E-42 292.4 8.0 120 4-126 9-131 (141)
4 3jue_A Arfgap with coiled-coil 100.0 3.2E-34 1.1E-38 302.0 8.9 124 1-125 22-150 (368)
5 3lju_X ARF-GAP with dual PH do 100.0 1.1E-32 3.8E-37 293.4 11.7 122 4-126 14-138 (386)
6 2owa_A Arfgap-like finger doma 100.0 2.5E-31 8.5E-36 249.1 9.1 113 6-122 18-133 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 3.8E-31 1.3E-35 250.6 6.3 93 1-95 8-104 (149)
8 3dwd_A ADP-ribosylation factor 100.0 1.5E-30 5E-35 245.7 7.7 118 7-124 21-145 (147)
9 2b0o_E UPLC1; arfgap, structur 99.9 2.8E-28 9.6E-33 247.6 11.4 120 6-125 24-147 (301)
10 2p57_A GTPase-activating prote 99.9 2.5E-28 8.5E-33 230.1 8.4 88 6-93 19-110 (144)
11 3sub_A ADP-ribosylation factor 99.9 6.8E-28 2.3E-32 230.6 9.8 87 7-93 4-94 (163)
12 3lvq_E ARF-GAP with SH3 domain 99.9 3E-28 1E-32 261.9 7.9 120 6-125 5-128 (497)
13 1dcq_A PYK2-associated protein 99.9 1.1E-27 3.8E-32 240.2 9.4 118 9-126 2-123 (278)
14 3o47_A ADP-ribosylation factor 99.9 7.4E-26 2.5E-30 234.1 9.2 88 7-94 20-110 (329)
15 1u5k_A Hypothetical protein; O 89.1 0.53 1.8E-05 46.6 6.1 59 15-86 137-199 (244)
16 1gnf_A Transcription factor GA 56.0 5.6 0.00019 30.9 2.1 35 23-57 3-38 (46)
17 2vut_I AREA, nitrogen regulato 50.3 7.2 0.00024 29.8 1.8 32 25-56 2-34 (43)
18 2kgo_A Uncharacterized protein 48.9 4.7 0.00016 36.5 0.7 31 24-54 56-87 (108)
19 2zet_C Melanophilin; complex, 47.6 9 0.00031 36.3 2.5 34 23-56 67-105 (153)
20 1tjl_A DNAK suppressor protein 46.2 6.8 0.00023 37.1 1.4 33 22-54 109-142 (151)
21 4gat_A Nitrogen regulatory pro 45.7 9.2 0.00032 31.7 2.0 35 22-56 7-42 (66)
22 2vx8_A Nucleoporin-like protei 41.7 6.2 0.00021 37.8 0.4 26 178-203 18-43 (169)
23 1d4u_A Nucleotide excision rep 39.6 6.1 0.00021 35.9 -0.1 31 23-53 4-35 (111)
24 3dfx_A Trans-acting T-cell-spe 39.1 14 0.00049 30.4 2.1 36 21-56 4-40 (63)
25 4hc9_A Trans-acting T-cell-spe 39.0 14 0.00048 33.5 2.2 32 24-55 5-37 (115)
26 1zbd_B Rabphilin-3A; G protein 36.6 16 0.00056 33.8 2.4 33 22-54 53-90 (134)
27 1ffk_W Ribosomal protein L37AE 36.2 25 0.00085 29.8 3.2 41 10-52 12-53 (73)
28 4glq_A Methyl-accepting chemot 34.3 18 0.00063 33.4 2.3 28 67-94 131-158 (171)
29 3g9m_A Glucocorticoid receptor 28.5 19 0.00066 31.0 1.3 31 23-56 1-31 (90)
30 3dzy_D Peroxisome proliferator 27.7 23 0.0008 37.9 2.0 31 23-56 49-79 (419)
31 1hcq_A Protein (estrogen recep 26.5 27 0.00093 29.9 1.9 31 23-56 3-33 (84)
32 1dl6_A Transcription factor II 26.1 32 0.0011 27.5 2.0 30 24-54 11-40 (58)
33 1r4i_A Androgen receptor; AR, 25.1 27 0.00092 31.2 1.6 33 21-56 4-36 (105)
34 2han_B Ecdysone receptor; tran 24.7 30 0.001 31.4 1.9 31 23-56 7-37 (119)
35 2kae_A GATA-type transcription 23.7 30 0.001 29.1 1.5 33 23-56 7-42 (71)
36 2did_A Tripartite motif protei 23.6 68 0.0023 24.2 3.4 41 22-65 6-48 (53)
37 2d8u_A Ubiquitin ligase TRIM63 23.4 65 0.0022 25.0 3.4 43 22-66 6-50 (64)
38 2uzg_A Ubiquitin carboxyl-term 22.3 42 0.0014 29.2 2.3 28 22-49 23-53 (97)
39 2nll_B Protein (thyroid hormon 22.0 33 0.0011 30.4 1.6 29 25-56 2-30 (103)
40 2ebl_A COUP transcription fact 21.4 31 0.0011 29.8 1.3 32 22-56 5-36 (89)
41 2a66_A Orphan nuclear receptor 20.8 33 0.0011 31.0 1.3 33 21-56 6-38 (113)
42 2han_A Protein ultraspiracle; 20.6 38 0.0013 29.5 1.6 31 23-56 9-39 (93)
43 1vq8_Z 50S ribosomal protein L 20.5 32 0.0011 29.6 1.1 40 11-52 13-53 (83)
44 1kb2_A Vitamin D3 receptor; VD 20.2 36 0.0012 30.5 1.4 31 23-56 5-35 (110)
45 1dsz_A RAR-alpha, retinoic aci 20.0 40 0.0014 28.9 1.6 29 25-56 5-33 (86)
No 1
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=9.8e-40 Score=306.58 Aligned_cols=124 Identities=35% Similarity=0.689 Sum_probs=116.9
Q ss_pred cchhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCC--cceeecccccCCHHHHHHHHh
Q 005784 2 ANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT--HRVKSVSMAKFTSQEVKALQE 79 (677)
Q Consensus 2 ~sr~ke~ernekiLr~Llk~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~Lg--HrVKSIsLD~WT~eEV~~mq~ 79 (677)
.++++++|+++++|++|++.++|++||||++++|+|||+|||||||++|+||||+|| ||||||+||+|+.++|++|+.
T Consensus 3 ~~~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~s~VrSl~ld~w~~~~l~~m~~ 82 (140)
T 2olm_A 3 SAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQK 82 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSCCCEEETTTCCCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCcceeeecCCCCCCHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999998 699999999999999999999
Q ss_pred cCcHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHHHhhcccccC
Q 005784 80 GGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGE 125 (677)
Q Consensus 80 gGN~raN~i~ea~~~p~~~~~Pdssd~~~lreFIr~KYeeKrF~~e 125 (677)
+||.++|++||+++++...+.|+.+|.+.+++|||+||++|+|+..
T Consensus 83 ~GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~ 128 (140)
T 2olm_A 83 HGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVP 128 (140)
T ss_dssp CHHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCC
T ss_pred hccHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCC
Confidence 9999999999999988777788887788889999999999999853
No 2
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=290.86 Aligned_cols=119 Identities=28% Similarity=0.569 Sum_probs=104.0
Q ss_pred hhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCC---cceeecccccCCHHHHHHHHhc
Q 005784 4 RLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEG 80 (677)
Q Consensus 4 r~ke~ernekiLr~Llk~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~Lg---HrVKSIsLD~WT~eEV~~mq~g 80 (677)
..+++|+++++|++|++.++|++||||++++|+|||+|||||||++|+||||+|| +|||||+||+|+.+||++|+.+
T Consensus 7 ~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~ 86 (134)
T 2iqj_A 7 SVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM 86 (134)
T ss_dssp ------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTC
T ss_pred cHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999998 4999999999999999999999
Q ss_pred CcHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHHHhhcccccC
Q 005784 81 GNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGE 125 (677)
Q Consensus 81 GN~raN~i~ea~~~p~~~~~Pdssd~~~lreFIr~KYeeKrF~~e 125 (677)
||.++|++||++++.. ...|.. .+.+|+|||+||++|+|+.+
T Consensus 87 GN~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~ 128 (134)
T 2iqj_A 87 GNGKANRLYEAYLPET-FRRPQI--DPAVEGFIRDKYEKKKYMDR 128 (134)
T ss_dssp HHHHHHHHHTTTCCSS-CCCCCS--HHHHHHHHHHHHTSCTTCCT
T ss_pred chHHHHHHHHhcCCcc-CCCCCc--hHHHHHHHHHHHhCCeeeCC
Confidence 9999999999998764 344543 34678999999999999854
No 3
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=292.40 Aligned_cols=120 Identities=28% Similarity=0.585 Sum_probs=109.1
Q ss_pred hhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCC---cceeecccccCCHHHHHHHHhc
Q 005784 4 RLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEG 80 (677)
Q Consensus 4 r~ke~ernekiLr~Llk~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~Lg---HrVKSIsLD~WT~eEV~~mq~g 80 (677)
+.+++|+++++|++|++.++|++||||++++|+|||+|||||||++|+||||+|| +|||||+||+|+.+||++|+.+
T Consensus 9 ~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~ 88 (141)
T 2crr_A 9 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM 88 (141)
T ss_dssp TTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999998 4999999999999999999999
Q ss_pred CcHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHHHhhcccccCC
Q 005784 81 GNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGER 126 (677)
Q Consensus 81 GN~raN~i~ea~~~p~~~~~Pdssd~~~lreFIr~KYeeKrF~~e~ 126 (677)
||.++|+|||++++.. ...|.. .+.+|+|||+||++|+|+.+.
T Consensus 89 GN~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~~ 131 (141)
T 2crr_A 89 GNTKARLLYEANLPEN-FRRPQT--DQAVEFFIRDKYEKKKYYDKN 131 (141)
T ss_dssp HHHHHHHHGGGSCCTT-CCCCCS--HHHHHHHHHHHHTSCTTCCCG
T ss_pred ccHHHHHHHHhcCCcc-cCCCCc--hHHHHHHHHHHHhcCcccCCC
Confidence 9999999999999765 345543 245789999999999998543
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=3.2e-34 Score=301.99 Aligned_cols=124 Identities=20% Similarity=0.412 Sum_probs=103.9
Q ss_pred CcchhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCC---cceeecccccCCHHHHHHH
Q 005784 1 MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKAL 77 (677)
Q Consensus 1 M~sr~ke~ernekiLr~Llk~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~Lg---HrVKSIsLD~WT~eEV~~m 77 (677)
+++|.|++|+++++|+.|++.++|++||||++++|+|||+|||||||++|+||||+|| +|||||+||+|+.++|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~ 101 (368)
T 3jue_A 22 GMARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLM 101 (368)
T ss_dssp ----------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999998 4999999999999999999
Q ss_pred HhcCcHHHHHHHhhcCCCCC--CCCCCCChHHHHHHHHHHHHhhcccccC
Q 005784 78 QEGGNQRAKEVLLKEWDPQR--QSFPDSSNVERLRNFIKHVYVDRRYTGE 125 (677)
Q Consensus 78 q~gGN~raN~i~ea~~~p~~--~~~Pdssd~~~lreFIr~KYeeKrF~~e 125 (677)
+.+||.++|+|||++|+... ++.|++. .+.+++|||+||++|+|+..
T Consensus 102 ~~~gn~~~n~~~e~~~~~~~~~kp~~~~~-~~~re~fIr~KY~~k~f~~~ 150 (368)
T 3jue_A 102 CELGNVIINQIYEARVEAMAVKKPGPSCS-RQEKEAWIHAKYVEKKFLTK 150 (368)
T ss_dssp HHSCHHHHHHHHTTTTTTTTCCCCCTTSC-HHHHHHHHHHHHTSCTTCCS
T ss_pred HHHccHHHHHHHHhhcccccCcCCCCCCC-HHHHHHHHHHHHHhhccccc
Confidence 99999999999999998643 3444443 45578899999999999854
No 5
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.97 E-value=1.1e-32 Score=293.40 Aligned_cols=122 Identities=22% Similarity=0.416 Sum_probs=110.1
Q ss_pred hhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCCc--ceeecccccCCHHHHHHHHhcC
Q 005784 4 RLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTH--RVKSVSMAKFTSQEVKALQEGG 81 (677)
Q Consensus 4 r~ke~ernekiLr~Llk~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~LgH--rVKSIsLD~WT~eEV~~mq~gG 81 (677)
..+|+++++++|++|++.++|+.||||++++|+|||+|||||||++|+||||+|.| |||||+||+|+.++|++|+.+|
T Consensus 14 ~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l~his~v~s~~ld~w~~~~~~~~~~~g 93 (386)
T 3lju_X 14 LYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVEFMASHG 93 (386)
T ss_dssp HHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTCTTTCCEEETTTSCCCHHHHHHHHHSS
T ss_pred hhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCCCccceeeeecccCCCHHHHHHHHHhc
Confidence 35899999999999999999999999999999999999999999999999999975 9999999999999999999999
Q ss_pred cHHHHHHHhhcCCCCCCCCCCCCh-HHHHHHHHHHHHhhcccccCC
Q 005784 82 NQRAKEVLLKEWDPQRQSFPDSSN-VERLRNFIKHVYVDRRYTGER 126 (677)
Q Consensus 82 N~raN~i~ea~~~p~~~~~Pdssd-~~~lreFIr~KYeeKrF~~e~ 126 (677)
|.++|+|||++++.. ..+|+..| ...+++|||+||++|+|+...
T Consensus 94 N~~~~~~~e~~~~~~-~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~ 138 (386)
T 3lju_X 94 NDAARARFESKVPSF-YYRPTPSDCQLLREQWIRAKYERQEFIYPE 138 (386)
T ss_dssp HHHHHHHHTTTCCTT-SCCCCTTSCHHHHHHHHHHHHTSCTTTSGG
T ss_pred chHHHHHHhccCCcc-CCCCCCccchHHHHHEHHhhhCCCEEECCc
Confidence 999999999999765 34555444 334678999999999999654
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=99.97 E-value=2.5e-31 Score=249.15 Aligned_cols=113 Identities=24% Similarity=0.408 Sum_probs=99.3
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCC-c--ceeecccccCCHHHHHHHHhcCc
Q 005784 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGGN 82 (677)
Q Consensus 6 ke~ernekiLr~Llk~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~Lg-H--rVKSIsLD~WT~eEV~~mq~gGN 82 (677)
..++..+++|+.|++.++|++||||++++|+|||+|||||||++|+||||+|| | |||||+||+|+.++|++|+.+||
T Consensus 18 ~~~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN 97 (138)
T 2owa_A 18 VSDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGN 97 (138)
T ss_dssp BCHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCH
T ss_pred CCHHHHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhcc
Confidence 34566778889999999999999999999999999999999999999999998 5 99999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHHHhhccc
Q 005784 83 QRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRY 122 (677)
Q Consensus 83 ~raN~i~ea~~~p~~~~~Pdssd~~~lreFIr~KYeeKrF 122 (677)
.++|+|||+++.. .|+....++.+.||..||++|.-
T Consensus 98 ~~an~~~e~~~~~----~~~~~~~~kY~s~~a~~Y~~kL~ 133 (138)
T 2owa_A 98 GRARNYFKQVLGV----NFSPKTKEYASSICGRQYKQILD 133 (138)
T ss_dssp HHHHHHHHHHTCT----TCCGGGCHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----CCCCCHHHHHhhHHHHHHHHHHH
Confidence 9999999986432 23444456677899999999843
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=3.8e-31 Score=250.57 Aligned_cols=93 Identities=23% Similarity=0.502 Sum_probs=85.9
Q ss_pred CcchhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCC-c--ceeeccccc-CCHHHHHH
Q 005784 1 MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAK-FTSQEVKA 76 (677)
Q Consensus 1 M~sr~ke~ernekiLr~Llk~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~Lg-H--rVKSIsLD~-WT~eEV~~ 76 (677)
|+++.+ ++++++|++|++.++|++||||++++|+|||+|||||||++|+||||+|| | |||||+||+ |+.+||++
T Consensus 8 m~~~~k--~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~ 85 (149)
T 2crw_A 8 MGDPSK--QDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRC 85 (149)
T ss_dssp SCCCCH--HHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHH
T ss_pred cccCCH--HHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHH
Confidence 666544 46789999999999999999999999999999999999999999999998 5 999999996 99999999
Q ss_pred HHhcCcHHHHHHHhhcCCC
Q 005784 77 LQEGGNQRAKEVLLKEWDP 95 (677)
Q Consensus 77 mq~gGN~raN~i~ea~~~p 95 (677)
|+.+||.++|+|||+++..
T Consensus 86 m~~~GN~~an~~~e~~~~~ 104 (149)
T 2crw_A 86 MQVGGNASASSFFHQHGCS 104 (149)
T ss_dssp HHTTCHHHHHHHHHHHCCC
T ss_pred HHHHhhHHHHHHHHhcCCC
Confidence 9999999999999998753
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.96 E-value=1.5e-30 Score=245.69 Aligned_cols=118 Identities=24% Similarity=0.490 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCC-c--ceeecccccCCHHHHHHHHhcCcH
Q 005784 7 EDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGGNQ 83 (677)
Q Consensus 7 e~ernekiLr~Llk~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~Lg-H--rVKSIsLD~WT~eEV~~mq~gGN~ 83 (677)
.+++++++|++|++.++|++||||++++|+|||+|||||||++|+||||+|| | |||||+||+|+.+||++|+.+||.
T Consensus 21 ~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~ 100 (147)
T 3dwd_A 21 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 100 (147)
T ss_dssp -CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhH
Confidence 4678999999999999999999999999999999999999999999999998 4 999999999999999999999999
Q ss_pred HHHHHHhhcCCCCC-CCC---CCCChHHHHHHHHHHHHhhccccc
Q 005784 84 RAKEVLLKEWDPQR-QSF---PDSSNVERLRNFIKHVYVDRRYTG 124 (677)
Q Consensus 84 raN~i~ea~~~p~~-~~~---Pdssd~~~lreFIr~KYeeKrF~~ 124 (677)
++|+|||++..... ... =++.-....|+.|+++++.|.|..
T Consensus 101 ~an~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 101 KFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHHHHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 99999998642110 000 011122346677777777777753
No 9
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.95 E-value=2.8e-28 Score=247.56 Aligned_cols=120 Identities=23% Similarity=0.469 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCC-c--ceeecccccCCHHHHHHHHhcCc
Q 005784 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGGN 82 (677)
Q Consensus 6 ke~ernekiLr~Llk~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~Lg-H--rVKSIsLD~WT~eEV~~mq~gGN 82 (677)
..+++.+++|++|++.++|++|+||++++|+|||+|||+|||++|+||||.|| | ||||++||.|+.++|.+|+.+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN 103 (301)
T 2b0o_E 24 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 103 (301)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCC
Confidence 45677888999999999999999999999999999999999999999999998 4 99999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCC-CChHHHHHHHHHHHHhhcccccC
Q 005784 83 QRAKEVLLKEWDPQRQSFPD-SSNVERLRNFIKHVYVDRRYTGE 125 (677)
Q Consensus 83 ~raN~i~ea~~~p~~~~~Pd-ssd~~~lreFIr~KYeeKrF~~e 125 (677)
.++|+|||+.++......|. .++...+++||+.||++++|...
T Consensus 104 ~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 104 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 99999999998775444554 34566688999999999999753
No 10
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.5e-28 Score=230.08 Aligned_cols=88 Identities=19% Similarity=0.520 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCC---cceeeccccc-CCHHHHHHHHhcC
Q 005784 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAK-FTSQEVKALQEGG 81 (677)
Q Consensus 6 ke~ernekiLr~Llk~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~Lg---HrVKSIsLD~-WT~eEV~~mq~gG 81 (677)
+.+++.+++|+.|++.++|++|+||++++|+|||+|||||||++|+||||+|| ++||||+||+ |+++||++|+.+|
T Consensus 19 ~~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~G 98 (144)
T 2p57_A 19 PNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGG 98 (144)
T ss_dssp CCHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhC
Confidence 34456788999999999999999999999999999999999999999999998 4999999996 9999999999999
Q ss_pred cHHHHHHHhhcC
Q 005784 82 NQRAKEVLLKEW 93 (677)
Q Consensus 82 N~raN~i~ea~~ 93 (677)
|.++|+|||++.
T Consensus 99 N~~an~~~e~~g 110 (144)
T 2p57_A 99 NANATAFFRQHG 110 (144)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 999999999874
No 11
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=6.8e-28 Score=230.61 Aligned_cols=87 Identities=31% Similarity=0.608 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHcC-CCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCC-c--ceeecccccCCHHHHHHHHhcCc
Q 005784 7 EDEKNERIIRGLLKL-QDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGGN 82 (677)
Q Consensus 7 e~ernekiLr~Llk~-pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~Lg-H--rVKSIsLD~WT~eEV~~mq~gGN 82 (677)
++...+++|++|++. ++|++||||++++|+|||++||||||++|+||||.|| | |||||+||+|+.++|++|+.+||
T Consensus 4 m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN 83 (163)
T 3sub_A 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83 (163)
T ss_dssp HHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCH
T ss_pred ccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCH
Confidence 567789999999985 8999999999999999999999999999999999998 4 99999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 005784 83 QRAKEVLLKEW 93 (677)
Q Consensus 83 ~raN~i~ea~~ 93 (677)
.++|++||++.
T Consensus 84 ~~an~~~e~~g 94 (163)
T 3sub_A 84 KKCQTYLENYG 94 (163)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 99999999864
No 12
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=3e-28 Score=261.94 Aligned_cols=120 Identities=23% Similarity=0.470 Sum_probs=107.0
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCC---cceeecccccCCHHHHHHHHhcCc
Q 005784 6 KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEGGN 82 (677)
Q Consensus 6 ke~ernekiLr~Llk~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~Lg---HrVKSIsLD~WT~eEV~~mq~gGN 82 (677)
+.++.++++|+.|++.++|++|+||++++|+|+|+|+|||||++|+||||+|| +||||++||.|+.+++++|+.+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN 84 (497)
T 3lvq_E 5 EPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGN 84 (497)
T ss_dssp ---CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCH
T ss_pred hhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhh
Confidence 45778999999999999999999999999999999999999999999999998 499999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCC-ChHHHHHHHHHHHHhhcccccC
Q 005784 83 QRAKEVLLKEWDPQRQSFPDS-SNVERLRNFIKHVYVDRRYTGE 125 (677)
Q Consensus 83 ~raN~i~ea~~~p~~~~~Pds-sd~~~lreFIr~KYeeKrF~~e 125 (677)
..+|.+||++++....++|.. ++...+++||++||++++|...
T Consensus 85 ~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~ 128 (497)
T 3lvq_E 85 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 128 (497)
T ss_dssp HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCC
T ss_pred HHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhccccccc
Confidence 999999999998665555653 4455678899999999999854
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.94 E-value=1.1e-27 Score=240.23 Aligned_cols=118 Identities=25% Similarity=0.507 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCC---cceeecccccCCHHHHHHHHhcCcHHH
Q 005784 9 EKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEGGNQRA 85 (677)
Q Consensus 9 ernekiLr~Llk~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~Lg---HrVKSIsLD~WT~eEV~~mq~gGN~ra 85 (677)
|+++++|+.|++.++|+.|+|||+.+|+|+|+|||+|||++|+||||+|| +||||++||+|+.++++.|+.+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 67899999999999999999999999999999999999999999999998 499999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCC-ChHHHHHHHHHHHHhhcccccCC
Q 005784 86 KEVLLKEWDPQRQSFPDS-SNVERLRNFIKHVYVDRRYTGER 126 (677)
Q Consensus 86 N~i~ea~~~p~~~~~Pds-sd~~~lreFIr~KYeeKrF~~e~ 126 (677)
|+|||+.++.....+|.. ++...+++||+.||+.++|..+.
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~ 123 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 123 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccccc
Confidence 999999987664444543 35566789999999999998653
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.92 E-value=7.4e-26 Score=234.11 Aligned_cols=88 Identities=27% Similarity=0.628 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCC-c--ceeecccccCCHHHHHHHHhcCcH
Q 005784 7 EDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT-H--RVKSVSMAKFTSQEVKALQEGGNQ 83 (677)
Q Consensus 7 e~ernekiLr~Llk~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~Lg-H--rVKSIsLD~WT~eEV~~mq~gGN~ 83 (677)
.+++++++|+.|++.++|++||||++++|+|||+|||||||++|+||||+|| | |||||+||+|+.++|++|+.+||.
T Consensus 20 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~ 99 (329)
T 3o47_A 20 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 99 (329)
T ss_dssp ---CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcH
Confidence 3578999999999999999999999999999999999999999999999998 3 899999999999999999999999
Q ss_pred HHHHHHhhcCC
Q 005784 84 RAKEVLLKEWD 94 (677)
Q Consensus 84 raN~i~ea~~~ 94 (677)
++|++||++..
T Consensus 100 ~~n~~~e~~~~ 110 (329)
T 3o47_A 100 KFREFLESQED 110 (329)
T ss_dssp HHHHHHHTCSS
T ss_pred HHHHHHHhcCC
Confidence 99999998754
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=89.07 E-value=0.53 Score=46.60 Aligned_cols=59 Identities=15% Similarity=0.332 Sum_probs=42.7
Q ss_pred HHHHHcC----CCCCCCcCCCCCCCCeeEecceeheehhhhhhhccCCcceeecccccCCHHHHHHHHhcCcHHHH
Q 005784 15 IRGLLKL----QDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAK 86 (677)
Q Consensus 15 Lr~Llk~----pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~LgHrVKSIsLD~WT~eEV~~mq~gGN~raN 86 (677)
.-+|++. +.=..|+.||..+..|.+...|.++|..|...+ .++.+++..|+..-.....
T Consensus 137 el~lL~~~G~~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~-------------~l~~~~l~~l~~l~~~~~~ 199 (244)
T 1u5k_A 137 SYKLLGLAGVIPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP-------------PYPPAVLDFLRHAVRRTVR 199 (244)
T ss_dssp HHHHHTTSSSCCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC-------------CCCHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHCCCCCCcCccccCCCCCCCcEecccCEEECcccCCCC-------------CCCHHHHHHHHHHHhCCHH
Confidence 3355553 445799999998667889999999999996421 5788888888765444333
No 16
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=56.01 E-value=5.6 Score=30.86 Aligned_cols=35 Identities=20% Similarity=0.550 Sum_probs=29.0
Q ss_pred CCCCCcCCCCC-CCCeeEecceeheehhhhhhhccC
Q 005784 23 DNRRCINCNSL-GTQYVCTNFWTFVCTNCSGIHREF 57 (677)
Q Consensus 23 gNk~CADCga~-~P~WaSin~GVFVC~~CSGIHR~L 57 (677)
+.+.|.+|+.. -|.|=.-.-|..||-.|.-.++..
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 38 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMN 38 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHT
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHc
Confidence 56899999985 589999889999999997665543
No 17
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=50.34 E-value=7.2 Score=29.84 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=26.6
Q ss_pred CCCcCCCCC-CCCeeEecceeheehhhhhhhcc
Q 005784 25 RRCINCNSL-GTQYVCTNFWTFVCTNCSGIHRE 56 (677)
Q Consensus 25 k~CADCga~-~P~WaSin~GVFVC~~CSGIHR~ 56 (677)
+.|++|+.. -|.|=.-..|-.||-.|.-..|.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~ 34 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKL 34 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHH
Confidence 579999985 58999999999999999765444
No 18
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=48.90 E-value=4.7 Score=36.49 Aligned_cols=31 Identities=13% Similarity=0.167 Sum_probs=21.0
Q ss_pred CCCCcCCCCCCC-CeeEecceeheehhhhhhh
Q 005784 24 NRRCINCNSLGT-QYVCTNFWTFVCTNCSGIH 54 (677)
Q Consensus 24 Nk~CADCga~~P-~WaSin~GVFVC~~CSGIH 54 (677)
--+|.+||.+=| .-.-.--++..|+.|...+
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~ 87 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHCQQEK 87 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHHHHHH
Confidence 469999998632 2222344678999998754
No 19
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=47.64 E-value=9 Score=36.34 Aligned_cols=34 Identities=29% Similarity=0.684 Sum_probs=27.6
Q ss_pred CCCCCcCCCCC-----CCCeeEecceeheehhhhhhhcc
Q 005784 23 DNRRCINCNSL-----GTQYVCTNFWTFVCTNCSGIHRE 56 (677)
Q Consensus 23 gNk~CADCga~-----~P~WaSin~GVFVC~~CSGIHR~ 56 (677)
+.+.|+-|..+ +..-.|.+-...||.+|...+|.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~ 105 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPE 105 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccCC
Confidence 56899999986 66667888888999999876654
No 20
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=46.18 E-value=6.8 Score=37.08 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=22.2
Q ss_pred CCCCCCcCCCCCCC-CeeEecceeheehhhhhhh
Q 005784 22 QDNRRCINCNSLGT-QYVCTNFWTFVCTNCSGIH 54 (677)
Q Consensus 22 pgNk~CADCga~~P-~WaSin~GVFVC~~CSGIH 54 (677)
..--+|.|||.+=| .-.-.--++-.|+.|...|
T Consensus 109 g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~ 142 (151)
T 1tjl_A 109 EDFGYCESCGVEIGIRRLEARPTADLCIDCKTLA 142 (151)
T ss_dssp TCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHH
T ss_pred CCCceeCCCCCcchHHHHhcCCCcchhHHHHHHH
Confidence 44579999998632 1222334677999998865
No 21
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=45.69 E-value=9.2 Score=31.73 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=29.0
Q ss_pred CCCCCCcCCCCC-CCCeeEecceeheehhhhhhhcc
Q 005784 22 QDNRRCINCNSL-GTQYVCTNFWTFVCTNCSGIHRE 56 (677)
Q Consensus 22 pgNk~CADCga~-~P~WaSin~GVFVC~~CSGIHR~ 56 (677)
.+.+.|++|+.. -|.|-.-.-|-.||-.|.-..+.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~ 42 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKL 42 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHH
Confidence 456899999985 68999999999999999765554
No 22
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=41.68 E-value=6.2 Score=37.81 Aligned_cols=26 Identities=35% Similarity=0.704 Sum_probs=21.5
Q ss_pred CCCCCCCCccccccCCCCCCCCcCCC
Q 005784 178 SSSPPVVRPVREILGDNVLPLRISEP 203 (677)
Q Consensus 178 ssSpP~v~Pv~dlLG~daPpl~i~~~ 203 (677)
.+++|+|+|++.|||+++|.|+.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (169)
T 2vx8_A 18 TSSTPEVKPLKSLLGDSAPTLHLNKG 43 (169)
T ss_dssp ---CCCEEEHHHHHSSCCSCCCTTSS
T ss_pred CCCCCcccchHhhhCCCCcceecCCC
Confidence 35579999999999999999998875
No 23
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=39.59 E-value=6.1 Score=35.91 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=24.0
Q ss_pred CCCCCcCCCCCCCCe-eEecceeheehhhhhh
Q 005784 23 DNRRCINCNSLGTQY-VCTNFWTFVCTNCSGI 53 (677)
Q Consensus 23 gNk~CADCga~~P~W-aSin~GVFVC~~CSGI 53 (677)
+...|.+|+...-.+ ..-+|++-||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 456899999864433 3469999999999865
No 24
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=39.13 E-value=14 Score=30.40 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=29.4
Q ss_pred CCCCCCCcCCCCC-CCCeeEecceeheehhhhhhhcc
Q 005784 21 LQDNRRCINCNSL-GTQYVCTNFWTFVCTNCSGIHRE 56 (677)
Q Consensus 21 ~pgNk~CADCga~-~P~WaSin~GVFVC~~CSGIHR~ 56 (677)
....+.|++|+.. -|.|=.-..|-.||-.|.-..+.
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~ 40 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKL 40 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHH
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHH
Confidence 3457899999985 58999999999999999765544
No 25
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=38.98 E-value=14 Score=33.49 Aligned_cols=32 Identities=22% Similarity=0.635 Sum_probs=26.7
Q ss_pred CCCCcCCCCC-CCCeeEecceeheehhhhhhhc
Q 005784 24 NRRCINCNSL-GTQYVCTNFWTFVCTNCSGIHR 55 (677)
Q Consensus 24 Nk~CADCga~-~P~WaSin~GVFVC~~CSGIHR 55 (677)
-+.|++|++. -|.|-.-.-|-+||-.|.-.++
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~K 37 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHK 37 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHH
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhh
Confidence 4789999985 6999998999999999976554
No 26
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=36.59 E-value=16 Score=33.79 Aligned_cols=33 Identities=30% Similarity=0.562 Sum_probs=24.2
Q ss_pred CCCCCCcCCCCCC-----CCeeEecceeheehhhhhhh
Q 005784 22 QDNRRCINCNSLG-----TQYVCTNFWTFVCTNCSGIH 54 (677)
Q Consensus 22 pgNk~CADCga~~-----P~WaSin~GVFVC~~CSGIH 54 (677)
.+.+.|+-|...- ..-.|..-...||.+|.+.+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 4668999999852 34456777788888887765
No 27
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=36.22 E-value=25 Score=29.81 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=31.0
Q ss_pred HHHHHHHHH-HcCCCCCCCcCCCCCCCCeeEecceeheehhhhh
Q 005784 10 KNERIIRGL-LKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSG 52 (677)
Q Consensus 10 rnekiLr~L-lk~pgNk~CADCga~~P~WaSin~GVFVC~~CSG 52 (677)
..++.++++ +.......|.-|+.....+.. .||..|..|--
T Consensus 12 slRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 12 KIRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred hHHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 345566666 567778899999987766665 59999999953
No 28
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=34.27 E-value=18 Score=33.38 Aligned_cols=28 Identities=7% Similarity=0.043 Sum_probs=23.0
Q ss_pred ccCCHHHHHHHHhcCcHHHHHHHhhcCC
Q 005784 67 AKFTSQEVKALQEGGNQRAKEVLLKEWD 94 (677)
Q Consensus 67 D~WT~eEV~~mq~gGN~raN~i~ea~~~ 94 (677)
-.|+++||++|+...+..+-.|-.+++-
T Consensus 131 r~w~~~ei~ll~~lA~ql~iAi~qa~l~ 158 (171)
T 4glq_A 131 RQWQEIEIDQFSELASTGSLVLERLHFL 158 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999888777653
No 29
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=28.51 E-value=19 Score=31.03 Aligned_cols=31 Identities=13% Similarity=0.533 Sum_probs=24.5
Q ss_pred CCCCCcCCCCCCCCeeEecceeheehhhhhhhcc
Q 005784 23 DNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (677)
Q Consensus 23 gNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~ 56 (677)
+++.|.-|+...- ...||++.|..|++..|-
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFRR 31 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFKR 31 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhhh
Confidence 4788999997643 468999999999997664
No 30
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=27.66 E-value=23 Score=37.93 Aligned_cols=31 Identities=19% Similarity=0.527 Sum_probs=25.1
Q ss_pred CCCCCcCCCCCCCCeeEecceeheehhhhhhhcc
Q 005784 23 DNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (677)
Q Consensus 23 gNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~ 56 (677)
-+..|.-||...-. ..|||+.|..|++..|.
T Consensus 49 ~~~~C~vC~~~~~g---~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 49 MAIECRVCGDKASG---FHYGVHACEGCKGFFRR 79 (419)
T ss_dssp -CCCCSSSCSCCCS---BCSSSBCCHHHHHHHHH
T ss_pred CCCcCeECCCcCCC---CccCcccchhhhHHHcc
Confidence 36789999987544 58999999999998765
No 31
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=26.52 E-value=27 Score=29.88 Aligned_cols=31 Identities=19% Similarity=0.633 Sum_probs=25.7
Q ss_pred CCCCCcCCCCCCCCeeEecceeheehhhhhhhcc
Q 005784 23 DNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (677)
Q Consensus 23 gNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~ 56 (677)
+...|.-|+... ....||++.|..|++..|-
T Consensus 3 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 3 ETRYCAVCNDYA---SGYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCcEECCCC---CCeeeCccchHHhhhhhhh
Confidence 567899999754 3579999999999998775
No 32
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=26.05 E-value=32 Score=27.48 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=21.4
Q ss_pred CCCCcCCCCCCCCeeEecceeheehhhhhhh
Q 005784 24 NRRCINCNSLGTQYVCTNFWTFVCTNCSGIH 54 (677)
Q Consensus 24 Nk~CADCga~~P~WaSin~GVFVC~~CSGIH 54 (677)
-..|-+|+.....+ ...-|..||..|.-|-
T Consensus 11 ~~~Cp~C~~~~lv~-D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 11 RVTCPNHPDAILVE-DYRAGDMICPECGLVV 40 (58)
T ss_dssp CCSBTTBSSSCCEE-CSSSCCEECTTTCCEE
T ss_pred cccCcCCCCCceeE-eCCCCeEEeCCCCCEE
Confidence 34799999865222 3466999999996554
No 33
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=25.05 E-value=27 Score=31.18 Aligned_cols=33 Identities=12% Similarity=0.526 Sum_probs=25.8
Q ss_pred CCCCCCCcCCCCCCCCeeEecceeheehhhhhhhcc
Q 005784 21 LQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (677)
Q Consensus 21 ~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~ 56 (677)
.+..+.|.-|+... ....||++.|..|++..|-
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 34578899999643 3579999999999998765
No 34
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=24.74 E-value=30 Score=31.42 Aligned_cols=31 Identities=19% Similarity=0.637 Sum_probs=25.6
Q ss_pred CCCCCcCCCCCCCCeeEecceeheehhhhhhhcc
Q 005784 23 DNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (677)
Q Consensus 23 gNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~ 56 (677)
....|.-|+... ....||++.|..|++..|-
T Consensus 7 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRA---SGYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcC---CcceECchhHHhhHHhhhh
Confidence 467899999754 2579999999999998775
No 35
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=23.75 E-value=30 Score=29.11 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=25.1
Q ss_pred CCCCCcCCCCC-CCCeeE--ecceeheehhhhhhhcc
Q 005784 23 DNRRCINCNSL-GTQYVC--TNFWTFVCTNCSGIHRE 56 (677)
Q Consensus 23 gNk~CADCga~-~P~WaS--in~GVFVC~~CSGIHR~ 56 (677)
....|++|+.. -|.|=. -.-| .||-.|.-.+|.
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~ 42 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRK 42 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHH
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHH
Confidence 45899999985 589998 5667 899999654443
No 36
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=23.57 E-value=68 Score=24.19 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=30.5
Q ss_pred CCCCCCcCCCCCCCCeeEecceeheehhhh--hhhccCCcceeecc
Q 005784 22 QDNRRCINCNSLGTQYVCTNFWTFVCTNCS--GIHREFTHRVKSVS 65 (677)
Q Consensus 22 pgNk~CADCga~~P~WaSin~GVFVC~~CS--GIHR~LgHrVKSIs 65 (677)
.+++.|..-+ ..-.|-+..=...||..|. +-|| +|+|..|.
T Consensus 6 ~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~--~H~~~~l~ 48 (53)
T 2did_A 6 SGESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR--AHTVVPLS 48 (53)
T ss_dssp CSCCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT--TSCEEECC
T ss_pred cCCCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC--CCcEeeHH
Confidence 3456777666 5577888888999999997 4676 48887765
No 37
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=23.45 E-value=65 Score=25.00 Aligned_cols=43 Identities=19% Similarity=0.396 Sum_probs=30.0
Q ss_pred CCCCCCcCCCCCCCCeeEecceeheehhhh--hhhccCCcceeeccc
Q 005784 22 QDNRRCINCNSLGTQYVCTNFWTFVCTNCS--GIHREFTHRVKSVSM 66 (677)
Q Consensus 22 pgNk~CADCga~~P~WaSin~GVFVC~~CS--GIHR~LgHrVKSIsL 66 (677)
.....|..-....-.+-|.+=...||..|. +-|| +|+|..|.-
T Consensus 6 ~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~--~H~~~~l~~ 50 (64)
T 2d8u_A 6 SGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK--ACEVAPLQS 50 (64)
T ss_dssp CCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT--SSCEECTTT
T ss_pred CCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC--CCCeeCHHH
Confidence 344566665344566777788889999996 4687 488877653
No 38
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=22.32 E-value=42 Score=29.24 Aligned_cols=28 Identities=18% Similarity=0.526 Sum_probs=20.9
Q ss_pred CCCCCCcCCCCCCCC-eeEec--ceeheehh
Q 005784 22 QDNRRCINCNSLGTQ-YVCTN--FWTFVCTN 49 (677)
Q Consensus 22 pgNk~CADCga~~P~-WaSin--~GVFVC~~ 49 (677)
+....|.+|++.+.. |+++. -|-+-|-+
T Consensus 23 ~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 23 KSLGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp HTTTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCCCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 356789999976656 98887 77777744
No 39
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=21.99 E-value=33 Score=30.40 Aligned_cols=29 Identities=24% Similarity=0.704 Sum_probs=23.5
Q ss_pred CCCcCCCCCCCCeeEecceeheehhhhhhhcc
Q 005784 25 RRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (677)
Q Consensus 25 k~CADCga~~P~WaSin~GVFVC~~CSGIHR~ 56 (677)
..|.-|+.... ...||++.|..|++..|-
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 57999997543 468999999999997765
No 40
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=21.36 E-value=31 Score=29.84 Aligned_cols=32 Identities=16% Similarity=0.614 Sum_probs=25.8
Q ss_pred CCCCCCcCCCCCCCCeeEecceeheehhhhhhhcc
Q 005784 22 QDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (677)
Q Consensus 22 pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~ 56 (677)
..+..|.-|+...- ...||++.|..|++..|-
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 45678999997643 468999999999998765
No 41
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=20.76 E-value=33 Score=31.03 Aligned_cols=33 Identities=15% Similarity=0.400 Sum_probs=24.3
Q ss_pred CCCCCCCcCCCCCCCCeeEecceeheehhhhhhhcc
Q 005784 21 LQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (677)
Q Consensus 21 ~pgNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~ 56 (677)
......|.-|+... ....||++.|..|++..|-
T Consensus 6 ~~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 6 EDLEELCPVCGDKV---SGYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp ----CBCTTTCCBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---cceeeCcccHHHHHHHHhh
Confidence 34567899999653 3579999999999998765
No 42
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=20.61 E-value=38 Score=29.54 Aligned_cols=31 Identities=16% Similarity=0.590 Sum_probs=25.0
Q ss_pred CCCCCcCCCCCCCCeeEecceeheehhhhhhhcc
Q 005784 23 DNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (677)
Q Consensus 23 gNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~ 56 (677)
....|.-|+... ....||++.|..|++..|-
T Consensus 9 ~~~~C~VCgd~a---~g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 9 SKHLCSICGDRA---SGKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp -CCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCCCcEeCCCC---cCeecCcchhHHHHHHHHh
Confidence 357899999754 2579999999999998765
No 43
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=20.53 E-value=32 Score=29.61 Aligned_cols=40 Identities=15% Similarity=0.413 Sum_probs=27.9
Q ss_pred HHHHHHHH-HcCCCCCCCcCCCCCCCCeeEecceeheehhhhh
Q 005784 11 NERIIRGL-LKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSG 52 (677)
Q Consensus 11 nekiLr~L-lk~pgNk~CADCga~~P~WaSin~GVFVC~~CSG 52 (677)
.++.++++ +.....-.|..||....- ....|++.|..|-.
T Consensus 13 lRk~vk~ie~~q~~~y~Cp~CG~~~v~--r~atGiW~C~~Cg~ 53 (83)
T 1vq8_Z 13 SRRRVAEIESEMNEDHACPNCGEDRVD--RQGTGIWQCSYCDY 53 (83)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEEEE--EEETTEEEETTTCC
T ss_pred HHHHHHHHHHhccccCcCCCCCCccee--ccCCCeEECCCCCC
Confidence 44555665 456678899999974322 34578999999964
No 44
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=20.16 E-value=36 Score=30.54 Aligned_cols=31 Identities=29% Similarity=0.593 Sum_probs=24.2
Q ss_pred CCCCCcCCCCCCCCeeEecceeheehhhhhhhcc
Q 005784 23 DNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (677)
Q Consensus 23 gNk~CADCga~~P~WaSin~GVFVC~~CSGIHR~ 56 (677)
..+.|.-|+...- ...||++.|..|++..|-
T Consensus 5 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (110)
T 1kb2_A 5 VPRICGVCGDRAT---GFHFNAMTCEGCKGFFRR 35 (110)
T ss_dssp --CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred cCCCCcEeCCCCC---ceEeCchhHhhhhhhhee
Confidence 3468999997643 468999999999998775
No 45
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=20.03 E-value=40 Score=28.92 Aligned_cols=29 Identities=21% Similarity=0.647 Sum_probs=23.3
Q ss_pred CCCcCCCCCCCCeeEecceeheehhhhhhhcc
Q 005784 25 RRCINCNSLGTQYVCTNFWTFVCTNCSGIHRE 56 (677)
Q Consensus 25 k~CADCga~~P~WaSin~GVFVC~~CSGIHR~ 56 (677)
+.|.-|+.... ...||++.|..|++..|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFRR 33 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHHH
Confidence 56999997653 368999999999998775
Done!