Your job contains 1 sequence.
>005785
MERSDGECASSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERK
EAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVE
TLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTY
YSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSA
GVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI
NTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL
LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV
LLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDI
NDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVS
QLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMP
PSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKE
GTHIPIDMFFAKRNRNF
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005785
(677 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2031050 - symbol:AT1G49980 species:3702 "Arabi... 2067 6.8e-214 1
ZFIN|ZDB-GENE-060526-137 - symbol:polk "polymerase (DNA d... 557 3.6e-102 3
UNIPROTKB|J9P5L3 - symbol:POLK "Uncharacterized protein" ... 538 3.3e-101 3
UNIPROTKB|E2RAS5 - symbol:POLK "Uncharacterized protein" ... 538 6.7e-101 3
UNIPROTKB|Q9UBT6 - symbol:POLK "DNA polymerase kappa" spe... 542 2.5e-99 2
UNIPROTKB|G3V8W7 - symbol:Polk "Protein Polk" species:101... 543 3.7e-99 2
MGI|MGI:1349767 - symbol:Polk "polymerase (DNA directed),... 547 7.2e-99 2
UNIPROTKB|Q8AWW1 - symbol:DINB1 "Uncharacterized protein"... 532 2.4e-98 3
UNIPROTKB|A6QNV6 - symbol:POLK "Uncharacterized protein" ... 548 2.8e-98 2
UNIPROTKB|F1NCT8 - symbol:POLK "Uncharacterized protein" ... 532 1.2e-97 3
UNIPROTKB|F1S2I2 - symbol:POLK "Uncharacterized protein" ... 532 2.1e-97 2
UNIPROTKB|E9PST4 - symbol:Polk "Protein Polk" species:101... 943 6.0e-97 2
UNIPROTKB|F1NCT7 - symbol:POLK "Uncharacterized protein" ... 532 3.0e-93 2
UNIPROTKB|Q5Q9G5 - symbol:POLK "DNA polymerase kappa" spe... 542 2.7e-90 2
UNIPROTKB|Q5Q9G7 - symbol:POLK "DNA polymerase kappa" spe... 542 2.7e-90 2
UNIPROTKB|D6R9M8 - symbol:POLK "DNA polymerase kappa" spe... 542 2.7e-86 2
UNIPROTKB|Q5Q9G8 - symbol:POLK "Polymerase kappa isoform ... 475 9.6e-82 2
ASPGD|ASPL0000039840 - symbol:AN3373 species:162425 "Emer... 782 1.0e-77 1
UNIPROTKB|D6RAE5 - symbol:POLK "DNA polymerase kappa" spe... 417 3.5e-76 2
WB|WBGene00017696 - symbol:polk-1 species:6239 "Caenorhab... 422 5.8e-76 2
POMBASE|SPCC553.07c - symbol:kpa1 "DinB translesion DNA r... 711 3.3e-70 1
UNIPROTKB|E9PST3 - symbol:Polk "Protein Polk" species:101... 707 8.9e-70 1
UNIPROTKB|F1MAB3 - symbol:Polk "Protein Polk" species:101... 471 5.1e-57 3
UNIPROTKB|D4A662 - symbol:Polk "Protein Polk" species:101... 543 2.1e-52 1
DICTYBASE|DDB_G0287149 - symbol:DDB_G0287149 "UMUC-like D... 542 2.7e-52 1
UNIPROTKB|Q83EN5 - symbol:dinP "DNA polymerase IV" specie... 475 3.4e-45 1
TIGR_CMR|CBU_0280 - symbol:CBU_0280 "DNA-damage-inducible... 475 3.4e-45 1
UNIPROTKB|Q71Y46 - symbol:dinB "DNA polymerase IV" specie... 467 2.4e-44 1
UNIPROTKB|Q47155 - symbol:dinB species:83333 "Escherichia... 461 1.2e-43 1
UNIPROTKB|Q8EHU9 - symbol:dinB "DNA polymerase IV" specie... 461 1.2e-43 1
TIGR_CMR|SO_1114 - symbol:SO_1114 "DNA-damage-inducible p... 461 1.2e-43 1
UNIPROTKB|Q74CQ6 - symbol:dinB "DNA polymerase IV" specie... 447 5.5e-42 1
TIGR_CMR|GSU_1616 - symbol:GSU_1616 "ImpB/MucB/SamB famil... 447 5.5e-42 1
TIGR_CMR|CPS_1040 - symbol:CPS_1040 "DNA polymerase IV" s... 425 1.9e-41 2
TIGR_CMR|CHY_1651 - symbol:CHY_1651 "DNA polymerase IV - ... 428 8.1e-40 1
UNIPROTKB|Q3ZAI3 - symbol:dinB "DNA polymerase IV" specie... 414 3.0e-38 1
TIGR_CMR|DET_0011 - symbol:DET_0011 "DNA polymerase IV, p... 414 3.0e-38 1
UNIPROTKB|Q74H50 - symbol:dinB "DNA polymerase IV" specie... 413 4.0e-38 1
TIGR_CMR|GSU_0043 - symbol:GSU_0043 "ImpB/MucB/SamB famil... 413 4.0e-38 1
UNIPROTKB|Q9KPS5 - symbol:dinB "DNA polymerase IV" specie... 398 1.8e-36 1
TIGR_CMR|VC_2287 - symbol:VC_2287 "DNA-damage-inducible p... 398 1.8e-36 1
UNIPROTKB|Q81M86 - symbol:dinB "DNA polymerase IV" specie... 385 5.0e-35 1
TIGR_CMR|BA_4366 - symbol:BA_4366 "DNA-damage-inducible p... 385 5.0e-35 1
UNIPROTKB|Q0BZW2 - symbol:dinB "DNA polymerase IV" specie... 382 1.1e-34 1
UNIPROTKB|P63987 - symbol:dinB2 "DNA polymerase IV 2" spe... 315 2.2e-27 1
UNIPROTKB|D6RDX9 - symbol:POLK "DNA polymerase kappa" spe... 313 3.6e-27 1
TIGR_CMR|SPO_3280 - symbol:SPO_3280 "DNA polymerase IV, p... 311 5.9e-27 1
UNIPROTKB|F1PDA5 - symbol:POLI "Uncharacterized protein" ... 214 3.6e-25 2
UNIPROTKB|Q9UNA4 - symbol:POLI "DNA polymerase iota" spec... 210 3.1e-24 2
UNIPROTKB|P63985 - symbol:dinB1 "DNA polymerase IV 1" spe... 302 3.2e-24 1
MGI|MGI:1347081 - symbol:Poli "polymerase (DNA directed),... 207 3.5e-24 3
ASPGD|ASPL0000012133 - symbol:AN3909 species:162425 "Emer... 315 1.6e-23 2
RGD|1305212 - symbol:Poli "polymerase (DNA directed), iot... 207 2.7e-23 2
UNIPROTKB|E2RC81 - symbol:POLH "Uncharacterized protein" ... 167 3.7e-23 3
FB|FBgn0035150 - symbol:Rev1 "Rev1" species:7227 "Drosoph... 275 3.8e-23 2
ZFIN|ZDB-GENE-081105-180 - symbol:si:dkey-57a22.7 "si:dke... 275 6.1e-23 2
UNIPROTKB|Q9Y253 - symbol:POLH "DNA polymerase eta" speci... 170 1.2e-22 3
ZFIN|ZDB-GENE-050417-376 - symbol:poli "polymerase (DNA d... 186 9.2e-22 2
UNIPROTKB|Q4KWZ7 - symbol:REV1 "DNA repair protein REV1" ... 255 1.7e-21 2
UNIPROTKB|F1P5H4 - symbol:REV1 "DNA repair protein REV1" ... 255 1.7e-21 2
TAIR|locus:2156319 - symbol:REV1 species:3702 "Arabidopsi... 284 3.6e-21 1
UNIPROTKB|J3KTN3 - symbol:POLI "DNA polymerase iota" spec... 155 4.1e-21 2
MGI|MGI:1891457 - symbol:Polh "polymerase (DNA directed),... 168 9.7e-21 3
UNIPROTKB|E2RPL9 - symbol:REV1 "Uncharacterized protein" ... 249 9.7e-21 2
RGD|1309893 - symbol:Polh "polymerase (DNA directed), eta... 164 2.6e-20 3
UNIPROTKB|F1MHR0 - symbol:POLI "Uncharacterized protein" ... 281 2.7e-20 2
TAIR|locus:2156309 - symbol:POLH "Y-family DNA polymerase... 182 3.8e-20 2
UNIPROTKB|F1N787 - symbol:REV1 "Uncharacterized protein" ... 241 6.5e-20 2
UNIPROTKB|Q9UBZ9 - symbol:REV1 "DNA repair protein REV1" ... 238 1.5e-19 2
UNIPROTKB|F1STE9 - symbol:REV1 "Uncharacterized protein" ... 238 1.5e-19 2
MGI|MGI:1929074 - symbol:Rev1 "REV1 homolog (S. cerevisia... 231 8.8e-19 2
ZFIN|ZDB-GENE-060421-4949 - symbol:polh "polymerase (DNA ... 147 1.0e-18 4
RGD|1306715 - symbol:Rev1 "REV1, polymerase (DNA directed... 227 1.8e-18 2
FB|FBgn0037554 - symbol:DNApol-iota "DNApol-iota" species... 165 1.9e-18 3
UNIPROTKB|F1MZ79 - symbol:POLH "Uncharacterized protein" ... 143 9.6e-18 3
POMBASE|SPBC1347.01c - symbol:rev1 "deoxycytidyl transfer... 251 1.1e-17 1
CGD|CAL0001748 - symbol:orf19.4412 species:5476 "Candida ... 259 2.7e-17 2
WB|WBGene00014066 - symbol:rev-1 species:6239 "Caenorhabd... 229 3.0e-15 1
UNIPROTKB|B4DG64 - symbol:POLH "DNA polymerase eta" speci... 159 3.1e-14 3
ASPGD|ASPL0000072145 - symbol:AN4678 species:162425 "Emer... 153 3.1e-14 3
UNIPROTKB|J3KQ09 - symbol:POLI "DNA polymerase iota" spec... 210 7.1e-14 2
UNIPROTKB|G5EH81 - symbol:MGCH7_ch7g688 "Sister chromatid... 132 1.7e-13 3
UNIPROTKB|F1RRJ6 - symbol:POLH "Uncharacterized protein" ... 178 4.9e-13 3
UNIPROTKB|I3LUT8 - symbol:LOC100737500 "Uncharacterized p... 180 7.8e-13 1
ASPGD|ASPL0000030996 - symbol:AN5620 species:162425 "Emer... 147 2.9e-12 2
WB|WBGene00018721 - symbol:polh-1 species:6239 "Caenorhab... 122 5.0e-12 3
FB|FBgn0037141 - symbol:DNApol-eta "DNApol-eta" species:7... 177 9.1e-12 2
UNIPROTKB|F1S1Z7 - symbol:POLI "Uncharacterized protein" ... 189 1.1e-11 3
UNIPROTKB|P04152 - symbol:umuC species:83333 "Escherichia... 189 1.4e-11 1
UNIPROTKB|J3QR36 - symbol:POLI "DNA polymerase iota" spec... 118 3.4e-11 2
POMBASE|SPBC16A3.11 - symbol:eso1 "sister chromatid cohes... 130 4.1e-11 3
UNIPROTKB|Q8E897 - symbol:rulB "SO_S mutagenesis protein ... 178 2.3e-10 1
TIGR_CMR|SO_A0012 - symbol:SO_A0012 "SO_S mutagenesis pro... 178 2.3e-10 1
UNIPROTKB|J3KSW2 - symbol:POLI "DNA polymerase iota" spec... 152 5.5e-10 2
UNIPROTKB|F1NCM3 - symbol:POLH "Uncharacterized protein" ... 159 4.0e-08 2
UNIPROTKB|F1NAG6 - symbol:POLH "Uncharacterized protein" ... 159 4.5e-08 2
UNIPROTKB|Q81NC2 - symbol:BAS3053 "ImpB/mucB/samB family ... 149 3.6e-07 1
TIGR_CMR|BA_3288 - symbol:BA_3288 "impB/mucB/samB family ... 149 3.6e-07 1
TIGR_CMR|CPS_2682 - symbol:CPS_2682 "umuC protein" specie... 148 4.6e-07 1
UNIPROTKB|J3KRG0 - symbol:POLI "DNA polymerase iota" spec... 124 7.9e-07 1
WARNING: Descriptions of 5 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2031050 [details] [associations]
symbol:AT1G49980 species:3702 "Arabidopsis thaliana"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006281 "DNA repair"
evidence=IEA;ISS] [GO:0016020 "membrane" evidence=IDA]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 EMBL:CP002684 GO:GO:0016020 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879
KO:K03511 OMA:VHVDCDA HOGENOM:HOG000082709 EMBL:AY508701
IPI:IPI00540157 RefSeq:NP_175420.3 UniGene:At.43723 HSSP:Q97W02
ProteinModelPortal:Q6JDV7 SMR:Q6JDV7 EnsemblPlants:AT1G49980.1
GeneID:841422 KEGG:ath:AT1G49980 TAIR:At1g49980 InParanoid:Q6JDV7
PhylomeDB:Q6JDV7 ProtClustDB:CLSN2681525 Genevestigator:Q6JDV7
Uniprot:Q6JDV7
Length = 671
Score = 2067 (732.7 bits), Expect = 6.8e-214, P = 6.8e-214
Identities = 424/676 (62%), Positives = 513/676 (75%)
Query: 5 DGECASSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFI 64
+GE +S++ + RPW+SY+TV+TNAKAGM+GVDKEKVQ+VVYEMSKGSKYF+NEERKEA +
Sbjct: 3 NGESSSTNNSSRPWESYNTVFTNAKAGMEGVDKEKVQRVVYEMSKGSKYFQNEERKEALM 62
Query: 65 QQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSN 124
+QKIEHMR RCAKL+S +S+YQKV DKRILELEATRDLSR WLHVDMDAFYAAVETLS+
Sbjct: 63 KQKIEHMRDRCAKLSSLDLSNYQKVVDKRILELEATRDLSRIWLHVDMDAFYAAVETLSD 122
Query: 125 PSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDL 184
PS+KGKPMAVG +SMI TANYEAR+FGVRAAMPGFIARKLCP+LIFVP DFTKYT+YSDL
Sbjct: 123 PSIKGKPMAVGGLSMISTANYEARKFGVRAAMPGFIARKLCPDLIFVPVDFTKYTHYSDL 182
Query: 185 TRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAP 244
TRKVF YDP+F+A SLDEAYLDITEVCRERG+SG EIAEELR+SVY E GLTCSAGVA
Sbjct: 183 TRKVFRNYDPHFIAGSLDEAYLDITEVCRERGLSGGEIAEELRSSVYSETGLTCSAGVAA 242
Query: 245 NRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCE 304
NRLLAKVCSDINKPNGQFVL NDR VMTF+S LP+RKIGGIGKVTEHIL+D GI TCE
Sbjct: 243 NRLLAKVCSDINKPNGQFVLQNDRSTVMTFVSFLPVRKIGGIGKVTEHILKDALGIKTCE 302
Query: 305 EMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK 364
EM+QKGSLL A+FS S+ADFFLSVGLGLG TNTPQ R RKSISSERTF+ T D+ LLY K
Sbjct: 303 EMVQKGSLLYALFSQSSADFFLSVGLGLGGTNTPQVRSRKSISSERTFAATGDERLLYSK 362
Query: 365 LAEIAEMLSADMQKEXXXXXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKA 424
L E+AEMLS DM+KE ASFE+R+RAV+LQ+Y SS+DILKHA+ LLKA
Sbjct: 363 LDELAEMLSHDMKKEGLTARTLTLKLKTASFEIRSRAVSLQRYTCSSDDILKHATKLLKA 422
Query: 425 ELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKI--VGDQNSLGSDIND 482
ELPVS+RLIGLR++QF E+ +R SDP+Q T+T F+ +S++ + D +S D N
Sbjct: 423 ELPVSVRLIGLRMSQFVEE-IRN-SDPSQGTITKFIVQKDSSRQAQDLDDNDSFDLDANK 480
Query: 483 DCLIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNK-ISEVEKIHENEVSQ 541
+CL +D+ +VS ET++ D V + + + S K I E + + E Q
Sbjct: 481 NCLSNDESGNVSFGSHETSSAHLKDVV------EYEERSQIDSGKVIPNQECMKKEERLQ 534
Query: 542 LLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPP 601
+LEG+SL+ + +E C D + + + Q + W+D YKC LCG E+PP
Sbjct: 535 ILEGDSLLKKYKE--CKPDTSHSMNDNSNATEAVSVFPQTEPLYWIDGYKCVLCGIELPP 592
Query: 602 SFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEG 661
SF+EERQEHSDFHLA+RLQ EE+GS + R + ++ + K KKQK +K+
Sbjct: 593 SFVEERQEHSDFHLAQRLQNEETGSSSSTTPSKRRILGKEK----VNSKPKKQKPDQKDS 648
Query: 662 T-HIPIDMFFAKRNRN 676
+ HIPI FF K N+N
Sbjct: 649 SKHIPIHAFFTKSNQN 664
>ZFIN|ZDB-GENE-060526-137 [details] [associations]
symbol:polk "polymerase (DNA directed) kappa"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
SMART:SM00734 ZFIN:ZDB-GENE-060526-137 GO:GO:0003684 GO:GO:0006281
GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GeneTree:ENSGT00530000062942 HOVERGEN:HBG101212 OrthoDB:EOG4Z8XVV
EMBL:BX294131 IPI:IPI00806343 UniGene:Dr.86433 SMR:B0S5R3
Ensembl:ENSDART00000141039 OMA:FISTEDK Uniprot:B0S5R3
Length = 875
Score = 557 (201.1 bits), Expect = 3.6e-102, Sum P(3) = 3.6e-102
Identities = 106/187 (56%), Positives = 139/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+D++K+ K++ E SKGS+++ENE +KE + Q+IE M + AK+T + Q
Sbjct: 25 KAGMEGLDRDKINKIILETSKGSRFYENELKKERQVNQRIEKMMEQKAKITKEQMKQAQA 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ ++LE +R+L R +HVDMDAFYAAVE P LK KPMAVG+MSM+ T+NY AR
Sbjct: 85 EVDRLTVDLERSRELGRVIVHVDMDAFYAAVEMRDCPELKDKPMAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA+KLCP+L+ VPT+F KY S R++F +YDPNFM SLDEAYLDI
Sbjct: 145 RFGVRAAMPGFIAKKLCPDLVIVPTNFDKYRAVSAQVREIFSEYDPNFMPMSLDEAYLDI 204
Query: 209 TEVCRER 215
TE +R
Sbjct: 205 TEHLEQR 211
Score = 458 (166.3 bits), Expect = 3.6e-102, Sum P(3) = 3.6e-102
Identities = 105/256 (41%), Positives = 147/256 (57%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +P +R VM F+
Sbjct: 238 GTSAEEAVREMRFRIEQKTSLTASAGIAPNMMLAKVCSDKNKPNGQYRIPPERQVVMDFM 297
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LP+RK+ G+GKVTE +L GI TC ++ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 298 KDLPVRKVSGVGKVTEKMLA-ALGIVTCSQLGQQMALLSLLFSETSWHHFLHISLGLGST 356
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASF 395
+ RKS+S+ERTF D Y E+ L+ D+Q+E F
Sbjct: 357 YMERDSERKSMSTERTFGEMSDAGEQYSLCKELCHDLAQDLQREGLKGKTVTLKLKNVKF 416
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVRA 447
EV+T+A TLQ + + E+I A LLK E+ P+ LRL+G+RV+ F EDK
Sbjct: 417 EVKTKAFTLQYAVCTEEEIFAAAKDLLKVEIDSVSPQPLKLRLMGVRVSGFISTEDK--- 473
Query: 448 PSDPTQKTLTNFMTSG 463
P QK++ F+ G
Sbjct: 474 --KPLQKSIMGFLQKG 487
Score = 47 (21.6 bits), Expect = 3.6e-102, Sum P(3) = 3.6e-102
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 606 ERQEHSDFHLAERLQKEESG--SDL--RILTHRERC 637
+ EH+D AER Q+E SG S L + L H C
Sbjct: 643 DSNEHTDLSAAER-QEELSGEPSSLESKTLVHYSSC 677
Score = 42 (19.8 bits), Expect = 1.2e-101, Sum P(3) = 1.2e-101
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 508 PVCDNSLPDLNDENCSFSNKISEVEK---IHENEVSQLLEGNSLVLRQEE 554
PVC+ + D+N +F+ I E K + NE + L S RQEE
Sbjct: 615 PVCNKEMKDVN--LTAFNQHIDECLKGSAMDSNEHTDL----SAAERQEE 658
>UNIPROTKB|J9P5L3 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0003684 GO:GO:0006281
GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 KO:K03511 CTD:51426
EMBL:AAEX03002157 RefSeq:XP_536321.2 Ensembl:ENSCAFT00000046862
GeneID:479180 KEGG:cfa:479180 Uniprot:J9P5L3
Length = 861
Score = 538 (194.4 bits), Expect = 3.3e-101, Sum P(3) = 3.3e-101
Identities = 101/187 (54%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DK+K+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKDKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +RDL+ + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRYAMELEQSRDLNNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYYAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNF+A SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSTEVKEILADYDPNFLAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 205 TKHLQER 211
Score = 476 (172.6 bits), Expect = 3.3e-101, Sum P(3) = 3.3e-101
Identities = 112/264 (42%), Positives = 159/264 (60%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ VLPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQVLPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE +
Sbjct: 405 THLARDGERKSMSVERTFSEISKAEEQYNLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 447
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE+ R
Sbjct: 465 FEVKTRASTVSSVVSTTEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPNEEDKRH 524
Query: 448 PSDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ +G+ S+ G
Sbjct: 525 Q----QRSIIGFLQAGNQSQSAPG 544
Score = 55 (24.4 bits), Expect = 1.2e-54, Sum P(2) = 1.2e-54
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 530 EVEKI--HENEVSQLLEGNSLVLRQEEGSCCDG-VEEVDKDITPDNKV--GTSSNQ 580
EV K+ HE +S LL +S Q +G+ G EE D T N + GTS+ +
Sbjct: 237 EVNKLREHERSISPLLFDDSPPDLQSQGNPLQGNSEEEDNPQTLQNSIVFGTSAEE 292
Score = 40 (19.1 bits), Expect = 3.3e-101, Sum P(3) = 3.3e-101
Identities = 28/141 (19%), Positives = 53/141 (37%)
Query: 486 IDDKETSV-SLDVSETNNYEFGDPVCD-N--SLPDLNDENCSFSNKISEVEKIHENEVSQ 541
++ KE S SE +YE + N LP+ D N + + + + H E
Sbjct: 669 VNKKENVYPSFSQSEKQDYETHQRNSEINFIELPETED-NPAKAESVDALSDKHSKEECA 727
Query: 542 LLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPP 601
L + + CC + ++ ++ + + S Q+ +L C +C E
Sbjct: 728 SLPSKPFNIEK----CC---QNSSSTVSLED-IASLSRQESSQPYLQALVCPVCNLEQKT 779
Query: 602 SFIEERQEHSDFHLAERLQKE 622
S + H D L + + +E
Sbjct: 780 SDLTLFNVHVDVCLNKGIIQE 800
>UNIPROTKB|E2RAS5 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0003684
GO:GO:0003887 GO:GO:0006297 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:TCTELYQ EMBL:AAEX03002157 Ensembl:ENSCAFT00000014935
Uniprot:E2RAS5
Length = 871
Score = 538 (194.4 bits), Expect = 6.7e-101, Sum P(3) = 6.7e-101
Identities = 101/187 (54%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DK+K+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 33 KAGMEGLDKDKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 92
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +RDL+ + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 93 QVDRYAMELEQSRDLNNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYYAR 152
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNF+A SLDEAYL+I
Sbjct: 153 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSTEVKEILADYDPNFLAMSLDEAYLNI 212
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 213 TKHLQER 219
Score = 474 (171.9 bits), Expect = 6.7e-101, Sum P(3) = 6.7e-101
Identities = 113/266 (42%), Positives = 160/266 (60%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ VLPN R AVM F
Sbjct: 295 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQVLPN-RQAVMDF 353
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 354 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 412
Query: 335 TNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXX 392
T+ +R RKS+S ERTFS Y E+ L+ D+QKE
Sbjct: 413 THLASSRDGERKSMSVERTFSEISKAEEQYNLCQELCSELAQDLQKEGLKGRTVTIKLKN 472
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKV 445
+FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE+
Sbjct: 473 VNFEVKTRASTVSSVVSTTEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPNEEDK 532
Query: 446 RAPSDPTQKTLTNFMTSGHASKKIVG 471
R Q+++ F+ +G+ S+ G
Sbjct: 533 RHQ----QRSIIGFLQAGNQSQSAPG 554
Score = 55 (24.4 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 530 EVEKI--HENEVSQLLEGNSLVLRQEEGSCCDG-VEEVDKDITPDNKV--GTSSNQ 580
EV K+ HE +S LL +S Q +G+ G EE D T N + GTS+ +
Sbjct: 245 EVNKLREHERSISPLLFDDSPPDLQSQGNPLQGNSEEEDNPQTLQNSIVFGTSAEE 300
Score = 40 (19.1 bits), Expect = 6.7e-101, Sum P(3) = 6.7e-101
Identities = 28/141 (19%), Positives = 53/141 (37%)
Query: 486 IDDKETSV-SLDVSETNNYEFGDPVCD-N--SLPDLNDENCSFSNKISEVEKIHENEVSQ 541
++ KE S SE +YE + N LP+ D N + + + + H E
Sbjct: 679 VNKKENVYPSFSQSEKQDYETHQRNSEINFIELPETED-NPAKAESVDALSDKHSKEECA 737
Query: 542 LLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPP 601
L + + CC + ++ ++ + + S Q+ +L C +C E
Sbjct: 738 SLPSKPFNIEK----CC---QNSSSTVSLED-IASLSRQESSQPYLQALVCPVCNLEQKT 789
Query: 602 SFIEERQEHSDFHLAERLQKE 622
S + H D L + + +E
Sbjct: 790 SDLTLFNVHVDVCLNKGIIQE 810
>UNIPROTKB|Q9UBT6 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IMP]
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0046872
GO:GO:0003684 GO:GO:0006260 EMBL:CH471084 EMBL:AB036934
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 KO:K03511
EMBL:AB027564 EMBL:AF163570 EMBL:AF194973 EMBL:AF315602
EMBL:AF318313 EMBL:AK091659 EMBL:AK314610 EMBL:AY273797
EMBL:BC014955 EMBL:BC050718 EMBL:AB036935 IPI:IPI00033151
IPI:IPI00218100 IPI:IPI00552440 IPI:IPI00552703 RefSeq:NP_057302.1
UniGene:Hs.732105 PDB:1T94 PDB:2OH2 PDB:2W7O PDB:2W7P PDB:3IN5
PDB:3PZP PDBsum:1T94 PDBsum:2OH2 PDBsum:2W7O PDBsum:2W7P
PDBsum:3IN5 PDBsum:3PZP ProteinModelPortal:Q9UBT6 SMR:Q9UBT6
IntAct:Q9UBT6 STRING:Q9UBT6 PhosphoSite:Q9UBT6 DMDM:59798438
PaxDb:Q9UBT6 PRIDE:Q9UBT6 Ensembl:ENST00000241436
Ensembl:ENST00000352007 Ensembl:ENST00000508526
Ensembl:ENST00000510815 Ensembl:ENST00000515295 GeneID:51426
KEGG:hsa:51426 UCSC:uc003kdw.3 UCSC:uc003keb.3 UCSC:uc010izq.3
CTD:51426 GeneCards:GC05P074843 HGNC:HGNC:9183 MIM:605650
neXtProt:NX_Q9UBT6 PharmGKB:PA33503 HOVERGEN:HBG101212
InParanoid:Q9UBT6 OMA:TCTELYQ OrthoDB:EOG4Z8XVV BindingDB:Q9UBT6
ChEMBL:CHEMBL5365 EvolutionaryTrace:Q9UBT6 GenomeRNAi:51426
NextBio:54977 ArrayExpress:Q9UBT6 Bgee:Q9UBT6 Genevestigator:Q9UBT6
Uniprot:Q9UBT6
Length = 870
Score = 542 (195.9 bits), Expect = 2.5e-99, Sum P(2) = 2.5e-99
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 475 (172.3 bits), Expect = 2.5e-99, Sum P(2) = 2.5e-99
Identities = 108/256 (42%), Positives = 156/256 (60%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 449 SDPTQKTLTNFMTSGH 464
Q+++ F+ +G+
Sbjct: 525 Q---QRSIIGFLQAGN 537
>UNIPROTKB|G3V8W7 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR006642
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734 RGD:620058
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 EMBL:CH473955
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:TCTELYQ UniGene:Rn.92419 Ensembl:ENSRNOT00000033952
Uniprot:G3V8W7
Length = 851
Score = 543 (196.2 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 103/187 (55%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDRFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKEKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 204 TQHLQER 210
Score = 471 (170.9 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 128/349 (36%), Positives = 183/349 (52%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFI 345
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS S+ +FL V LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLL-ALGIVTCTELYQQRALLSLLFSESSWHYFLHVALGLGST 404
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASF 395
+ + RKS+S ERTFS Y E+ L+ D+QKE F
Sbjct: 405 DLARDGERKSMSVERTFSEINKTEEQYSLCQELCTELAHDLQKEGLKGRTVTIKLKNVDF 464
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 449
EV+TRA T+ IS++EDI A LL+ E+ P+ LRL+G+R++ F+ D R
Sbjct: 465 EVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGSPQPLRLRLMGVRMSTFSNDDDRKHQ 524
Query: 450 DPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYE-FGDP 508
Q+++ F+ +G+ G C D + + + ET+ + F D
Sbjct: 525 ---QRSIIGFLQAGNQGLSPTG------------CTADRTDKTELVKPLETSRKKSFFDK 569
Query: 509 VCDNSLPDLNDE-NCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGS 556
+P+ D C KI+ + + +E SQ L+ S + E S
Sbjct: 570 KRSERIPNCQDPPRC----KIAGEQALQASEPSQALKKMSESFKTSENS 614
Score = 40 (19.1 bits), Expect = 1.0e-53, Sum P(2) = 1.0e-53
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 427 PVSLR-LIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQ 473
PV R G+ + FNE P+ + + HAS +G Q
Sbjct: 623 PVCFREQEGISLEAFNEHVDACLDGPSTSENSEMPSYSHASSADIGQQ 670
>MGI|MGI:1349767 [details] [associations]
symbol:Polk "polymerase (DNA directed), kappa" species:10090
"Mus musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008152 "metabolic process"
evidence=TAS] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
SMART:SM00734 MGI:MGI:1349767 GO:GO:0005634 GO:GO:0046872
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
CleanEx:MM_POLK PDB:4FJO PDBsum:4FJO GeneTree:ENSGT00530000062942
HOGENOM:HOG000082711 KO:K03511 CTD:51426 HOVERGEN:HBG101212
OMA:TCTELYQ OrthoDB:EOG4Z8XVV EMBL:AB027563 EMBL:AF163571
EMBL:AB040765 EMBL:BC052820 IPI:IPI00131620 IPI:IPI00462547
RefSeq:NP_036178.1 UniGene:Mm.89926 PDB:2LSJ PDBsum:2LSJ
ProteinModelPortal:Q9QUG2 SMR:Q9QUG2 IntAct:Q9QUG2 STRING:Q9QUG2
PhosphoSite:Q9QUG2 PRIDE:Q9QUG2 Ensembl:ENSMUST00000022172
GeneID:27015 KEGG:mmu:27015 UCSC:uc007rne.1 InParanoid:Q9QUG2
NextBio:304949 Bgee:Q9QUG2 Genevestigator:Q9QUG2
GermOnline:ENSMUSG00000021668 Uniprot:Q9QUG2
Length = 852
Score = 547 (197.6 bits), Expect = 7.2e-99, Sum P(2) = 7.2e-99
Identities = 104/187 (55%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 204 TQHLQER 210
Score = 464 (168.4 bits), Expect = 7.2e-99, Sum P(2) = 7.2e-99
Identities = 109/264 (41%), Positives = 158/264 (59%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LP+ R AVM F
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPS-RSAVMDF 344
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 345 IKDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGS 403
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE +
Sbjct: 404 TDLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVN 463
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 464 FEVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKH 523
Query: 449 SDPTQKTLTNFMTSGHASKKIVGD 472
Q+++ F+ +G+ + GD
Sbjct: 524 Q---QRSIIGFLQAGNQALSSTGD 544
Score = 37 (18.1 bits), Expect = 7.4e-54, Sum P(2) = 7.4e-54
Identities = 13/55 (23%), Positives = 20/55 (36%)
Query: 427 PVSLR-LIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDI 480
PV R G+ + FNE P+ + HAS +G + + I
Sbjct: 623 PVCFREQEGVSLEAFNEHVDECLDGPSTSENSKISCYSHASSADIGQKEDVHPSI 677
>UNIPROTKB|Q8AWW1 [details] [associations]
symbol:DINB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0019985 "translesion synthesis" evidence=TAS]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR006642
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734
GO:GO:0005654 GO:GO:0003684 Reactome:REACT_115612 GO:GO:0003887
GO:GO:0006297 GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 HSSP:P96022
GeneTree:ENSGT00530000062942 HOGENOM:HOG000082711 KO:K03511
CTD:51426 HOVERGEN:HBG101212 OMA:TCTELYQ EMBL:AADN02067159
EMBL:AADN02067160 EMBL:AADN02067161 EMBL:AY118271 IPI:IPI00586140
RefSeq:NP_989514.1 UniGene:Gga.42393 SMR:Q8AWW1 STRING:Q8AWW1
Ensembl:ENSGALT00000024123 GeneID:374003 KEGG:gga:374003
InParanoid:Q8AWW1 NextBio:20813531 Uniprot:Q8AWW1
Length = 867
Score = 532 (192.3 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 103/187 (55%), Positives = 134/187 (71%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM G+DKEK+ K++ E SKGSK++ENE +K+ + Q+IE M K+T + Q
Sbjct: 26 KAGMQGLDKEKINKIIMEASKGSKFYENELKKDQQVNQRIEKMMQLKEKITQQQLLKAQL 85
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +LELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 86 QVDKLVLELERSRNLSCTIVHIDMDAFYAAVEMRDNPELKEKPIAVGSMSMLSTSNYHAR 145
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA+KLCP L VP +F KY S +++ +YDP+FM LDEAYL++
Sbjct: 146 RFGVRAAMPGFIAKKLCPHLTIVPLNFEKYRKVSKEVKEILAEYDPHFMPMGLDEAYLNV 205
Query: 209 TEVCRER 215
TE ER
Sbjct: 206 TEHLEER 212
Score = 440 (159.9 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 102/254 (40%), Positives = 151/254 (59%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ + +R AV+ FI
Sbjct: 280 GTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPNGQCRISPERQAVLDFI 339
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 340 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEASWRSFLDISLGLGST 398
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASF 395
+ + RKS+S+ERTFS Y E+ L+ D+QKE +F
Sbjct: 399 HLEKDGERKSMSTERTFSEISKAEDQYSLCQELCRELAQDLQKEGLKGKTVTLKLKNVNF 458
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 449
EV+TRA T+ +S+ ++I A +LL E+ P+ +RL+G+RV+ F ++ +
Sbjct: 459 EVKTRASTVLSSVSTEDEIFAVAKMLLGTEIDSVAPHPLRIRLMGVRVSGFLSEEEKKYQ 518
Query: 450 DPTQKTLTNFMTSG 463
QK++ +F+ SG
Sbjct: 519 ---QKSIKSFLKSG 529
Score = 56 (24.8 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
Identities = 26/107 (24%), Positives = 45/107 (42%)
Query: 518 NDENCSFSNKISEVEKIHENE-VSQLLEGNSLVLRQEEGSC-CDGVEEVDKDITPDNKVG 575
N EN + +++ S + + ++ L N+L + G GV+ + NKV
Sbjct: 543 NQENLTKNSEASSRGSFFDKKRAARQLNSNNLFPNESVGKQHFHGVKSSANFVEEANKV- 601
Query: 576 TSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKE 622
+ QK + + C +C E S +EE H D LA L ++
Sbjct: 602 -TDLQKSNVCEI--FTCPVCFEEQSSSNLEEINRHVDECLAGSLVED 645
>UNIPROTKB|A6QNV6 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0003684
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879
GeneTree:ENSGT00530000062942 HOGENOM:HOG000082711 KO:K03511
CTD:51426 HOVERGEN:HBG101212 OMA:TCTELYQ OrthoDB:EOG4Z8XVV
EMBL:DAAA02027742 EMBL:DAAA02027743 EMBL:BC149024 IPI:IPI00867010
RefSeq:NP_001095728.1 UniGene:Bt.38144 SMR:A6QNV6 STRING:A6QNV6
Ensembl:ENSBTAT00000005265 GeneID:541218 KEGG:bta:541218
InParanoid:A6QNV6 NextBio:20879073 Uniprot:A6QNV6
Length = 877
Score = 548 (198.0 bits), Expect = 2.8e-98, Sum P(2) = 2.8e-98
Identities = 109/214 (50%), Positives = 150/214 (70%)
Query: 2 ERSDGECASSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKE 61
E+SDG ++N + + KAGM+G+DKEK+ K++ E +KGS+++ NE +KE
Sbjct: 6 EKSDGT-KEKNDNYKDDLLLRMGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKE 64
Query: 62 AFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVET 121
+ Q+IE+M + AK+TS + Q D+ +ELE +RDL+ + +H+DMDAFYAAVE
Sbjct: 65 KQVNQRIENMMQQKAKITSEQLRKAQLQVDRFAVELEQSRDLNSTIVHIDMDAFYAAVEM 124
Query: 122 LSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYY 181
NP LK KP+AVG+MSM+ T+NY ARRFGVRAAMPGFIA++LCP+LI VP +F KY
Sbjct: 125 RDNPELKDKPIAVGSMSMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYQAV 184
Query: 182 SDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 215
S +++ YDPNFMA SLDEAYL+IT+ ER
Sbjct: 185 SREVKEILTDYDPNFMAMSLDEAYLNITKHLEER 218
Score = 459 (166.6 bits), Expect = 2.8e-98, Sum P(2) = 2.8e-98
Identities = 108/264 (40%), Positives = 158/264 (59%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 352
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 353 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 411
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QK+ +
Sbjct: 412 THLARDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTVTIKLKNVN 471
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 447
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE++ +
Sbjct: 472 FEVKTRASTVSTVVSTAEEIFVIAKELLRTEIDADFPQPLRLRLMGVRLSGFPNEEEKKH 531
Query: 448 PSDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ G+ + G
Sbjct: 532 Q----QRSIIGFLQPGNQALSATG 551
>UNIPROTKB|F1NCT8 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
SMART:SM00734 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 EMBL:AADN02067159
EMBL:AADN02067160 EMBL:AADN02067161 IPI:IPI00680917
Ensembl:ENSGALT00000032847 ArrayExpress:F1NCT8 Uniprot:F1NCT8
Length = 862
Score = 532 (192.3 bits), Expect = 1.2e-97, Sum P(3) = 1.2e-97
Identities = 103/187 (55%), Positives = 134/187 (71%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM G+DKEK+ K++ E SKGSK++ENE +K+ + Q+IE M K+T + Q
Sbjct: 25 KAGMQGLDKEKINKIIMEASKGSKFYENELKKDQQVNQRIEKMMQLKEKITQQQLLKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +LELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDKLVLELERSRNLSCTIVHIDMDAFYAAVEMRDNPELKEKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA+KLCP L VP +F KY S +++ +YDP+FM LDEAYL++
Sbjct: 145 RFGVRAAMPGFIAKKLCPHLTIVPLNFEKYRKVSKEVKEILAEYDPHFMPMGLDEAYLNV 204
Query: 209 TEVCRER 215
TE ER
Sbjct: 205 TEHLEER 211
Score = 433 (157.5 bits), Expect = 1.2e-97, Sum P(3) = 1.2e-97
Identities = 102/255 (40%), Positives = 151/255 (59%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ + +R AV+ FI
Sbjct: 276 GTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPNGQCRISPERQAVLDFI 335
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 336 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEASWRSFLDISLGLGST 394
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASF 395
+ + RKS+S+ERTFS Y E+ L+ D+QKE +F
Sbjct: 395 HLEKDGERKSMSTERTFSEISKAEDQYSLCQELCRELAQDLQKEGLKGKTVTLKLKNVNF 454
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRL-IGLRVTQFNEDKVRAP 448
EV+TRA T+ +S+ ++I A +LL E+ P+ +RL +G+RV+ F ++ +
Sbjct: 455 EVKTRASTVLSSVSTEDEIFAVAKMLLGTEIDSVAPHPLRIRLMVGVRVSGFLSEEEKKY 514
Query: 449 SDPTQKTLTNFMTSG 463
QK++ +F+ SG
Sbjct: 515 Q---QKSIKSFLKSG 526
Score = 56 (24.8 bits), Expect = 1.2e-97, Sum P(3) = 1.2e-97
Identities = 26/107 (24%), Positives = 45/107 (42%)
Query: 518 NDENCSFSNKISEVEKIHENE-VSQLLEGNSLVLRQEEGSC-CDGVEEVDKDITPDNKVG 575
N EN + +++ S + + ++ L N+L + G GV+ + NKV
Sbjct: 540 NQENLTKNSEASSRGSFFDKKRAARQLNSNNLFPNESVGKQHFHGVKSSANFVEEANKV- 598
Query: 576 TSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKE 622
+ QK + + C +C E S +EE H D LA L ++
Sbjct: 599 -TDLQKSNVCEI--FTCPVCFEEQSSSNLEEINRHVDECLAGSLVED 642
>UNIPROTKB|F1S2I2 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 GO:GO:0005634 GO:GO:0003684
GO:GO:0003887 GO:GO:0006297 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
KO:K03511 CTD:51426 OMA:TCTELYQ EMBL:CU466449 RefSeq:XP_003123756.1
Ensembl:ENSSSCT00000015383 GeneID:100518650 KEGG:ssc:100518650
Uniprot:F1S2I2
Length = 878
Score = 532 (192.3 bits), Expect = 2.1e-97, Sum P(2) = 2.1e-97
Identities = 99/187 (52%), Positives = 139/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE ++E + Q+IE+M + A++TS + Q
Sbjct: 32 KAGMEGLDKEKINKIIMEATKGSRFYGNELKREKQVNQRIENMMQQKAQITSQQLRKAQL 91
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +RDLS + +H+DMDAFYAAVE NP L+ KP+AVG+ +M+ T+NY AR
Sbjct: 92 QVDRFAMELEQSRDLSNTIVHIDMDAFYAAVEMRDNPELRDKPIAVGSRNMLSTSNYHAR 151
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FGVR AMPGFIA++LCP+LI VP +F KY S +++F YDPNFMA SLDEAYL+I
Sbjct: 152 KFGVRGAMPGFIAKRLCPQLIIVPPNFDKYRAVSSEVKEIFADYDPNFMALSLDEAYLNI 211
Query: 209 TEVCRER 215
T+ ER
Sbjct: 212 TKHLEER 218
Score = 468 (169.8 bits), Expect = 2.1e-97, Sum P(2) = 2.1e-97
Identities = 128/370 (34%), Positives = 193/370 (52%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R VM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQVVMDF 352
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC ++ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 353 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTDLYQQRALLSLLFSETSWHYFLHISLGLGS 411
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXAS 394
T P+ RKS+S ERTFS Y E+ L+ D+QKE
Sbjct: 412 TCLPRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTLKLKNVD 471
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 447
FEV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F NE++ +
Sbjct: 472 FEVKTRASTVLSVISTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPNEEEKKH 531
Query: 448 PSDPTQKTLTNFMTSGHASKKIVG------DQNSLGSDI---NDDCLIDDKETSVSLDVS 498
Q+++ F+ G+ + G D++ + + D K + L
Sbjct: 532 Q----QRSIIGFLQPGNQTLSATGCMLEKTDKDQFPKPLEMSHKKSFFDKKRSERKLSHQ 587
Query: 499 ETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCC 558
+T E D SLP + +E + ++ Q+ V +E+GS
Sbjct: 588 DTFKSEIVDR---QSLPTSQSFQVLKKKRSENLETLENSDNGQVF--TCPVCFREQGSI- 641
Query: 559 DGVEEVDKDI 568
G+E +K +
Sbjct: 642 -GLEAFNKHV 650
>UNIPROTKB|E9PST4 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR006642 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00734 RGD:620058 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 GO:GO:0006281
GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879 IPI:IPI00777177
Ensembl:ENSRNOT00000061462 ArrayExpress:E9PST4 Uniprot:E9PST4
Length = 771
Score = 943 (337.0 bits), Expect = 6.0e-97, Sum P(2) = 6.0e-97
Identities = 207/442 (46%), Positives = 284/442 (64%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDRFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKEKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ +ER G E+ R + + G G+APN +LAKVCSD NKPNGQ+ + R
Sbjct: 204 TQHLQER--QGWP--EDKRR-YFIKMGNCRKIGIAPNTMLAKVCSDKNKPNGQYQIVPSR 258
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
AVM FI LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS S+ +FL V
Sbjct: 259 SAVMDFIKDLPIRKVSGIGKVTEKMLL-ALGIVTCTELYQQRALLSLLFSESSWHYFLHV 317
Query: 329 GLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXX 388
LGLGST+ + RKS+S ERTFS Y E+ L+ D+QKE
Sbjct: 318 ALGLGSTDLARDGERKSMSVERTFSEINKTEEQYSLCQELCTELAHDLQKEGLKGRTVTI 377
Query: 389 XXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNE 442
FEV+TRA T+ IS++EDI A LL+ E+ P+ LRL+G+R++ F+
Sbjct: 378 KLKNVDFEVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGSPQPLRLRLMGVRMSTFSN 437
Query: 443 DKVRAPSDPTQKTLTNFMTSGH 464
D R Q+++ F+ +G+
Sbjct: 438 DDDRKHQ---QRSIIGFLQAGN 456
Score = 40 (19.1 bits), Expect = 6.0e-97, Sum P(2) = 6.0e-97
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 427 PVSLR-LIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQ 473
PV R G+ + FNE P+ + + HAS +G Q
Sbjct: 543 PVCFREQEGISLEAFNEHVDACLDGPSTSENSEMPSYSHASSADIGQQ 590
>UNIPROTKB|F1NCT7 [details] [associations]
symbol:POLK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
EMBL:AADN02067159 EMBL:AADN02067160 EMBL:AADN02067161
IPI:IPI00680100 Ensembl:ENSGALT00000032848 ArrayExpress:F1NCT7
Uniprot:F1NCT7
Length = 543
Score = 532 (192.3 bits), Expect = 3.0e-93, Sum P(2) = 3.0e-93
Identities = 103/187 (55%), Positives = 134/187 (71%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM G+DKEK+ K++ E SKGSK++ENE +K+ + Q+IE M K+T + Q
Sbjct: 25 KAGMQGLDKEKINKIIMEASKGSKFYENELKKDQQVNQRIEKMMQLKEKITQQQLLKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +LELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDKLVLELERSRNLSCTIVHIDMDAFYAAVEMRDNPELKEKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA+KLCP L VP +F KY S +++ +YDP+FM LDEAYL++
Sbjct: 145 RFGVRAAMPGFIAKKLCPHLTIVPLNFEKYRKVSKEVKEILAEYDPHFMPMGLDEAYLNV 204
Query: 209 TEVCRER 215
TE ER
Sbjct: 205 TEHLEER 211
Score = 416 (151.5 bits), Expect = 3.0e-93, Sum P(2) = 3.0e-93
Identities = 102/253 (40%), Positives = 144/253 (56%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ + +R AV+ FI
Sbjct: 281 GTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPNGQCRISPERQAVLDFI 340
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 341 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEASWRSFLDISLGLGST 399
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASF 395
+ + RKS+S+ERTFS Y E+ L+ D+QKE +F
Sbjct: 400 HLEKDGERKSMSTERTFSEISKAEDQYSLCQELCRELAQDLQKEGLKGKTVTLKLKNVNF 459
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 455
EV+TRA T+ +S+ ++I A +LL E+ S+ LR+ D +R S +
Sbjct: 460 EVKTRASTVLSSVSTEDEIFAVAKMLLGTEID-SVAPHPLRIRLM--DSLRKTSQ-RKAA 515
Query: 456 LTNFMTSGHASKK 468
+ TS ASKK
Sbjct: 516 WSGLTTSQSASKK 528
>UNIPROTKB|Q5Q9G5 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:AC010245
EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082711
UniGene:Hs.732105 HGNC:HGNC:9183 EMBL:AC026424 EMBL:AY769932
IPI:IPI00967663 SMR:Q5Q9G5 STRING:Q5Q9G5 Ensembl:ENST00000504026
UCSC:uc003kee.3 HOVERGEN:HBG056846 Uniprot:Q5Q9G5
Length = 461
Score = 542 (195.9 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 378 (138.1 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 82/165 (49%), Positives = 109/165 (66%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 379
T+ + RKS+S ERTFS Y E+ L+ D+QKE
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKE 449
>UNIPROTKB|Q5Q9G7 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:AC010245
EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082711
UniGene:Hs.732105 HGNC:HGNC:9183 EMBL:AC026424 HOVERGEN:HBG056846
EMBL:AY769930 IPI:IPI00965083 SMR:Q5Q9G7 STRING:Q5Q9G7
Ensembl:ENST00000509126 Uniprot:Q5Q9G7
Length = 489
Score = 542 (195.9 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 378 (138.1 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 82/165 (49%), Positives = 109/165 (66%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 379
T+ + RKS+S ERTFS Y E+ L+ D+QKE
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKE 449
>UNIPROTKB|D6R9M8 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 EMBL:AC010245 EMBL:AC116341 GO:GO:0003887
InterPro:IPR024728 Pfam:PF11798 HOGENOM:HOG000082711 HGNC:HGNC:9183
EMBL:AC026424 IPI:IPI00967979 ProteinModelPortal:D6R9M8 SMR:D6R9M8
Ensembl:ENST00000514141 UCSC:uc003kea.3 ArrayExpress:D6R9M8
Bgee:D6R9M8 Uniprot:D6R9M8
Length = 427
Score = 542 (195.9 bits), Expect = 2.7e-86, Sum P(2) = 2.7e-86
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 340 (124.7 bits), Expect = 2.7e-86, Sum P(2) = 2.7e-86
Identities = 72/136 (52%), Positives = 96/136 (70%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSER 350
T+ + RKS+S ER
Sbjct: 405 THLTRDGERKSMSVER 420
>UNIPROTKB|Q5Q9G8 [details] [associations]
symbol:POLK "Polymerase kappa isoform 1" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR006642
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 EMBL:AC010245
EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 UniGene:Hs.732105 HGNC:HGNC:9183
HOVERGEN:HBG101212 EMBL:AC026424 EMBL:AY769929 IPI:IPI01013677
SMR:Q5Q9G8 STRING:Q5Q9G8 Ensembl:ENST00000380481 Uniprot:Q5Q9G8
Length = 780
Score = 475 (172.3 bits), Expect = 9.6e-82, Sum P(2) = 9.6e-82
Identities = 108/256 (42%), Positives = 156/256 (60%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 449 SDPTQKTLTNFMTSGH 464
Q+++ F+ +G+
Sbjct: 435 Q---QRSIIGFLQAGN 447
Score = 400 (145.9 bits), Expect = 9.6e-82, Sum P(2) = 9.6e-82
Identities = 76/121 (62%), Positives = 95/121 (78%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRA 154
+ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY ARRFGVRA
Sbjct: 1 MELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRA 60
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ E
Sbjct: 61 AMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEE 120
Query: 215 R 215
R
Sbjct: 121 R 121
>ASPGD|ASPL0000039840 [details] [associations]
symbol:AN3373 species:162425 "Emericella nidulans"
[GO:0000077 "DNA damage checkpoint" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 EMBL:BN001306 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 OMA:VHVDCDA EnsemblFungi:CADANIAT00009669
HOGENOM:HOG000082709 Uniprot:C8VHQ1
Length = 612
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 166/422 (39%), Positives = 249/422 (59%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y SKGSK+F +E+ ++ + +KI+ + +L S +S +
Sbjct: 37 KAGQDSVDQRKVSEIIYNASKGSKFFNHEQIRDNVLTEKIQRILKEKTRLESLNLSVDLR 96
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+AD+ E+E+TRDLS+ +HVD DAF+AAVE L P LK PMAVG ++ T NYEAR
Sbjct: 97 LADQVFAEIESTRDLSQYVVHVDCDAFFAAVEELDRPELKTVPMAVGK-GVLTTCNYEAR 155
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M F+A+KLCP+LI +P ++ KYT + R + +YDP F +AS+DEAYL+I
Sbjct: 156 KFGCRSGMASFVAKKLCPQLICLPQNYEKYTAKAQEIRAILAQYDPQFESASIDEAYLNI 215
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T CRE+ + E +R + E+ ++ SAG+A N +AK+CS+ NKPNGQF +PN++
Sbjct: 216 TAYCREKQLDPDEAVSRMRAEILEKTKISVSAGIAANAKIAKICSNRNKPNGQFRVPNEK 275
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F+ LP+RKI G+G+V E L D GI TC ++ + + L +F F
Sbjct: 276 NAIMEFMRDLPMRKINGVGRVFEREL-DSIGIKTCGDIFPQRAYLAKLFGEKALHFLAQC 334
Query: 329 GLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXX 386
LG+G T A RKS+ +ERTF + KL A+ L D+ +
Sbjct: 335 YLGVGRTKIQPAESYERKSVGTERTFHEISKREEFREKLWSCAQELEKDLSRTQFMGRTL 394
Query: 387 XXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELP-VSLRLIGLRVTQFNE 442
A+FEV TR + +S+++D+ A +L+ E+P + LRL+G+R T
Sbjct: 395 VLKVKLATFEVLTRQYQPARAVSTAKDLFTSALPMLEKLEKEIPNMKLRLLGIRCTNLVS 454
Query: 443 DK 444
K
Sbjct: 455 TK 456
>UNIPROTKB|D6RAE5 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:CH471084
EMBL:AC010245 EMBL:AC116341 GO:GO:0003887 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879
HOGENOM:HOG000082711 UniGene:Hs.732105 HGNC:HGNC:9183 EMBL:AC026424
IPI:IPI00966124 SMR:D6RAE5 Ensembl:ENST00000503479 Uniprot:D6RAE5
Length = 396
Score = 417 (151.9 bits), Expect = 3.5e-76, Sum P(2) = 3.5e-76
Identities = 82/145 (56%), Positives = 106/145 (73%)
Query: 71 MRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGK 130
M + A++TS + Q D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK K
Sbjct: 1 MMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDK 60
Query: 131 PMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFC 190
P+AVG+MSM+ T+NY ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++
Sbjct: 61 PIAVGSMSMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILA 120
Query: 191 KYDPNFMAASLDEAYLDITEVCRER 215
YDPNFMA SLDEAYL+IT+ ER
Sbjct: 121 DYDPNFMAMSLDEAYLNITKHLEER 145
Score = 378 (138.1 bits), Expect = 3.5e-76, Sum P(2) = 3.5e-76
Identities = 82/165 (49%), Positives = 109/165 (66%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 221 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 279
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 280 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 338
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 379
T+ + RKS+S ERTFS Y E+ L+ D+QKE
Sbjct: 339 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKE 383
>WB|WBGene00017696 [details] [associations]
symbol:polk-1 species:6239 "Caenorhabditis elegans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 GO:GO:0003887 EMBL:FO080222 eggNOG:COG0389
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 EMBL:FO080380 GeneTree:ENSGT00530000062942
PIR:S44637 RefSeq:NP_001122692.1 RefSeq:NP_001122693.1
UniGene:Cel.10581 ProteinModelPortal:P34409 SMR:P34409
STRING:P34409 EnsemblMetazoa:F22B7.6a GeneID:176209
KEGG:cel:CELE_F22B7.6 UCSC:F22B7.6b.2 CTD:176209 WormBase:F22B7.6a
WormBase:F22B7.6b HOGENOM:HOG000082711 InParanoid:P34409 KO:K03511
OMA:FMLAKIC NextBio:891590 Uniprot:P34409
Length = 596
Score = 422 (153.6 bits), Expect = 5.8e-76, Sum P(2) = 5.8e-76
Identities = 113/278 (40%), Positives = 156/278 (56%)
Query: 214 ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMT 273
E G E E+R V + GLTCSAG+A N +LAK+CSD+NKPNGQ+VL ND+ A+M
Sbjct: 247 EFGTGREEAVREIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQYVLENDKNAIME 306
Query: 274 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL- 332
F+ LPIRK+GGIG+V E L+ I T +M K +L F+ + + FL LGL
Sbjct: 307 FLKDLPIRKVGGIGRVCEAQLK-AMDIQTVGDMNLKKNLYPLCFTPLSQESFLRTALGLP 365
Query: 333 GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXX 392
G + R RKSIS ERTFS T D +L + EI ML D++K
Sbjct: 366 GRPSESDPR-RKSISVERTFSPTSDFNILLEEHQEICRMLEEDVRKSGIVGGKTVTLKLK 424
Query: 393 -ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKVRAPS 449
+SF+V TR++T + S EDI K + LL+ E +RL+G+R++Q F ED+ +
Sbjct: 425 LSSFDVLTRSLTPSDVVKSLEDIQKFSLELLEKEKGKEIRLLGVRLSQLIFEEDEKKR-- 482
Query: 450 DPTQKTLTNFMTSGHASKKIVGDQNSLGSD-INDDCLI 486
KT+T F KK+ QN GS+ ++DD +I
Sbjct: 483 ---SKTITEFWNE----KKLQ-IQNLQGSENVDDDDVI 512
Score = 396 (144.5 bits), Expect = 5.8e-76, Sum P(2) = 5.8e-76
Identities = 79/186 (42%), Positives = 124/186 (66%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVIS 84
+ + KAGM+G+DKEK+ KV+ E + S Y +++++ I++K+ ++ R T
Sbjct: 4 FNDNKAGMNGLDKEKITKVIEENTSAS-YSSFSKKQQSRIEEKVLEIKNRLQTATREERQ 62
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTAN 144
+ + + ++LE++RDLSR + +DMDA++AAVE NP+L+ PMAVG+ +M+ T+N
Sbjct: 63 KSEILMENLEMKLESSRDLSRDCVCIDMDAYFAAVEMRDNPALRTVPMAVGSSAMLSTSN 122
Query: 145 YEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA 204
Y ARRFGVRA MPGFI+ KLCP L VP ++ KYT S ++F +YD + SLDEA
Sbjct: 123 YLARRFGVRAGMPGFISNKLCPSLTIVPGNYPKYTKVSRQFSQIFMEYDSDVGMMSLDEA 182
Query: 205 YLDITE 210
++D+T+
Sbjct: 183 FIDLTD 188
Score = 108 (43.1 bits), Expect = 8.2e-42, Sum P(2) = 8.2e-42
Identities = 55/237 (23%), Positives = 101/237 (42%)
Query: 449 SDPTQKTLTNFMTSGHASK-KIVGDQNS-----LGSDINDDCLIDDKETSVSLDVSE--- 499
SDP +K+++ T S I+ +++ L D+ ++ K ++ L +S
Sbjct: 371 SDPRRKSISVERTFSPTSDFNILLEEHQEICRMLEEDVRKSGIVGGKTVTLKLKLSSFDV 430
Query: 500 -TNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQL-LEGNSLVLRQEEGSC 557
T + D V SL D+ FS ++ E EK E+ L + + L+ ++E
Sbjct: 431 LTRSLTPSDVV--KSLEDIQ----KFSLELLEKEK--GKEIRLLGVRLSQLIFEEDEKKR 482
Query: 558 CDGVEEV--DKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHL 615
+ E +K + N G+ + D I +D C +CGT+ +E R + + H+
Sbjct: 483 SKTITEFWNEKKLQIQNLQGSENVDDDDVIMMDTRPCPICGTD-----VENRLDVMNCHV 537
Query: 616 AERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAK 672
E + K ++ ++ TQ+ S +KRK Q+ K + ID F+ K
Sbjct: 538 DECILKVQNDDGPELICVSVENKSTQKPERPSTKKRKLQEKRPKAKKMVTIDSFWKK 594
>POMBASE|SPCC553.07c [details] [associations]
symbol:kpa1 "DinB translesion DNA repair polymerase, pol
kappa" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=ISM]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0019985 "translesion synthesis" evidence=TAS] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 PomBase:SPCC553.07c
GO:GO:0005829 GO:GO:0007126 GO:GO:0000077 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0000790 GO:GO:0003887 GO:GO:0019985 eggNOG:COG0389
Gene3D:3.30.1490.100 SUPFAM:SSF100879 HSSP:Q9UHC5 KO:K03511
PIR:T41397 RefSeq:NP_587767.2 ProteinModelPortal:O74944
STRING:O74944 EnsemblFungi:SPCC553.07c.1 GeneID:2539547
KEGG:spo:SPCC553.07c OMA:VHVDCDA OrthoDB:EOG441TMM NextBio:20800707
Uniprot:O74944
Length = 547
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 168/492 (34%), Positives = 276/492 (56%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVI----- 83
K+G + V+++K+ +++YE SKGSK+FE E++++ ++ +IE ++ K S +
Sbjct: 45 KSGQENVNQKKINEIIYEASKGSKFFEAEQKRDRELRLRIEKVQVEVEKYQSKLRFDKAF 104
Query: 84 ----SHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
+ Q+ D + + A RDL++ +HVD DAFYA++E L NP LK PMAVG S+
Sbjct: 105 QREWTIRQESVDTTVEDFRAKRDLTQIIVHVDCDAFYASIEELKNPKLKSLPMAVGK-SV 163
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+CTANY AR+FGVR+AMP FIARK+CP+L+ +P + ++Y S + V +YD N A
Sbjct: 164 LCTANYVARKFGVRSAMPEFIARKICPDLVVIPLNLSEYAIKSKEIQNVLAQYDSNLCPA 223
Query: 200 SLDEAYLDITEVCRERGIS-GIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSD 254
S+DE Y+++T R + ++ +E + E++R V+EE G+T S G+A N+LLAK+ S+
Sbjct: 224 SIDEFYMNLTSHLRLQELAFTVENITMVVEKIRKQVHEETGVTVSCGIAANKLLAKIASN 283
Query: 255 INKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 314
KPN QF +P D + + F++ LP+R++ GIG+V E L + I TC ++ + +L
Sbjct: 284 KRKPNNQFFIPFDEIGISKFMNDLPVREVSGIGRVLEQQLLGL-EIKTCGDIQRNLVILS 342
Query: 315 AVFSHSTADFFLSVGLGLGSTNTPQ--ARFRKSISSERTFSVT-EDKALLYRKLAEIAEM 371
+F + L G G+T + RK+I SE TFS +++ KL + +
Sbjct: 343 YIFLPKSFQNLLRCSYGFGTTILDEYGESKRKTIGSEATFSSNLSSPSIIEYKLRLLVQN 402
Query: 372 LSADMQKEXXXXXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR 431
+S ++QK + F+V T+ ++ ++I S D+LK A LL+ P+++R
Sbjct: 403 VSENLQKRGLVTNSIAIKYKTSEFQVHTKQKSIGQFIHSESDLLKPALQLLRQSYPMTIR 462
Query: 432 LIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKET 491
L+G+R T+ K R + + N + K I + L + D CL + ET
Sbjct: 463 LLGVRATKL-VSKSRCLAMQLKFQSQNTVPCPVCQKNIENELGILNQHV-DLCL--NVET 518
Query: 492 SVSL-DVSETNN 502
SL + T N
Sbjct: 519 VKSLINTDHTAN 530
>UNIPROTKB|E9PST3 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734 RGD:620058
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 IPI:IPI00777918 Ensembl:ENSRNOT00000061463
ArrayExpress:E9PST3 Uniprot:E9PST3
Length = 793
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 196/547 (35%), Positives = 287/547 (52%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDRFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKEKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN--KPNGQFVL- 264
T+ +ER G + ++ + G+ A N L ++ PN
Sbjct: 204 TQHLQERQGWPEDKRRYFIKMGNCRKIGILTLAMTTGNFHLLRLAQPQGCIAPNTMLAKV 263
Query: 265 ------PNDRMAVMTFISS-LPIRKIGGIGKVTE--HILRDVF---GINTCEEMLQKGSL 312
PN + ++ S+ + K I KV+ + + GI TC E+ Q+ +L
Sbjct: 264 CSDKNKPNGQYQIVPSRSAVMDFIKDLPIRKVSGIGKVTEKMLLALGIVTCTELYQQRAL 323
Query: 313 LCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 372
L +FS S+ +FL V LGLGST+ + RKS+S ERTFS Y E+ L
Sbjct: 324 LSLLFSESSWHYFLHVALGLGSTDLARDGERKSMSVERTFSEINKTEEQYSLCQELCTEL 383
Query: 373 SADMQKEXXXXXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRL 432
+ D+QKE FEV+TRA T+ IS++EDI A LL+ E+
Sbjct: 384 AHDLQKEGLKGRTVTIKLKNVDFEVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGSPQ 443
Query: 433 IGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDD-CLIDDKET 491
LR+ VR T +N H + I+G + ++ C D +
Sbjct: 444 -PLRLRLMG---VR------MSTFSNDDDRKHQQRSIIGFLQAGNQGLSPTGCTADRTDK 493
Query: 492 SVSLDVSETNNYE-FGDPVCDNSLPDLNDE-NCSFSNKISEVEKIHENEVSQLLEGNSLV 549
+ + ET+ + F D +P+ D C KI+ + + +E SQ L+ S
Sbjct: 494 TELVKPLETSRKKSFFDKKRSERIPNCQDPPRC----KIAGEQALQASEPSQALKKMSES 549
Query: 550 LRQEEGS 556
+ E S
Sbjct: 550 FKTSENS 556
>UNIPROTKB|F1MAB3 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00734 RGD:620058
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 IPI:IPI00372895 Ensembl:ENSRNOT00000040799
ArrayExpress:F1MAB3 Uniprot:F1MAB3
Length = 711
Score = 471 (170.9 bits), Expect = 5.1e-57, Sum P(3) = 5.1e-57
Identities = 128/349 (36%), Positives = 183/349 (52%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 150 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFI 209
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS S+ +FL V LGLGST
Sbjct: 210 KDLPIRKVSGIGKVTEKMLL-ALGIVTCTELYQQRALLSLLFSESSWHYFLHVALGLGST 268
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASF 395
+ + RKS+S ERTFS Y E+ L+ D+QKE F
Sbjct: 269 DLARDGERKSMSVERTFSEINKTEEQYSLCQELCTELAHDLQKEGLKGRTVTIKLKNVDF 328
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 449
EV+TRA T+ IS++EDI A LL+ E+ P+ LRL+G+R++ F+ D R
Sbjct: 329 EVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGSPQPLRLRLMGVRMSTFSNDDDRKHQ 388
Query: 450 DPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYE-FGDP 508
Q+++ F+ +G+ G C D + + + ET+ + F D
Sbjct: 389 ---QRSIIGFLQAGNQGLSPTG------------CTADRTDKTELVKPLETSRKKSFFDK 433
Query: 509 VCDNSLPDLNDE-NCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGS 556
+P+ D C KI+ + + +E SQ L+ S + E S
Sbjct: 434 KRSERIPNCQDPPRC----KIAGEQALQASEPSQALKKMSESFKTSENS 478
Score = 98 (39.6 bits), Expect = 5.1e-57, Sum P(3) = 5.1e-57
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 189 FCKYDPNFMAASLDEAYLDITEVCRER 215
F +YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 48 FYEYDPNFMAMSLDEAYLNITQHLQER 74
Score = 96 (38.9 bits), Expect = 5.1e-57, Sum P(3) = 5.1e-57
Identities = 15/27 (55%), Positives = 24/27 (88%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFE 55
KAGM+G+DKEK+ K++ E +KGS+++E
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYE 50
Score = 40 (19.1 bits), Expect = 5.1e-06, Sum P(3) = 5.1e-06
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 427 PVSLR-LIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQ 473
PV R G+ + FNE P+ + + HAS +G Q
Sbjct: 487 PVCFREQEGISLEAFNEHVDACLDGPSTSENSEMPSYSHASSADIGQQ 534
>UNIPROTKB|D4A662 [details] [associations]
symbol:Polk "Protein Polk" species:10116 "Rattus
norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR006642 InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173
SMART:SM00734 RGD:620058 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
IPI:IPI00951859 Ensembl:ENSRNOT00000065248 ArrayExpress:D4A662
Uniprot:D4A662
Length = 434
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 103/187 (55%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDRFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKEKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 204 TQHLQER 210
>DICTYBASE|DDB_G0287149 [details] [associations]
symbol:DDB_G0287149 "UMUC-like DNA-repair protein"
species:44689 "Dictyostelium discoideum" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 dictyBase:DDB_G0287149
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389
EMBL:AAFI02000098 KO:K03511 RefSeq:XP_637357.1
ProteinModelPortal:Q54KS3 EnsemblProtists:DDB0304434 GeneID:8625979
KEGG:ddi:DDB_G0287149 InParanoid:Q54KS3 OMA:YANVEEM Uniprot:Q54KS3
Length = 517
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 107/281 (38%), Positives = 179/281 (63%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+ VD E + ++ + S G+ + E ER ++ IE + ++ ++ P YQ+
Sbjct: 7 KAGMEKVDIESINSMLKQFSVGTHFQEKLERDSKRTREYIEGILSKLNEI--PDTEEYQE 64
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D + EL + D SR+++H+DMDAFYA VE + N L G P+AVG++ M+ T+NY AR
Sbjct: 65 KVDSYLTELTSKIDQSRTFIHIDMDAFYANVEEMDNKELIGHPVAVGSIDMLVTSNYAAR 124
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+GVR+ +PG +A KLCP LI +P+ +Y S + R + K+D N+++ SLDE +DI
Sbjct: 125 AYGVRSGLPGLLAMKLCPHLIILPSRMDRYREVSLIIRNILYKFDKNYVSPSLDEGCIDI 184
Query: 209 TEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 267
TE ++ ++GI++A +L+ ++E+ LTCS G++ + LL+K+ S+INKPNG F L D
Sbjct: 185 TEYLKDNENLTGIDVANQLQNDIFEKTTLTCSMGISCSPLLSKISSEINKPNGYFYL--D 242
Query: 268 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ 308
+ FI ++ I+K+ GIGKV + +L+ + G+ ++++
Sbjct: 243 KQYSQEFIKTIQIKKLPGIGKVRQELLKTL-GLEFVSDIIE 282
>UNIPROTKB|Q83EN5 [details] [associations]
symbol:dinP "DNA polymerase IV" species:227377 "Coxiella
burnetii RSA 493" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005737 GO:GO:0000287 GO:GO:0003684 GO:GO:0006281
GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003887
HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:MNILNEY
RefSeq:NP_819324.2 GeneID:1208161 KEGG:cbu:CBU_0280 PATRIC:17929253
ProtClustDB:CLSK913950 BioCyc:CBUR227377:GJ7S-285-MONOMER
Uniprot:Q83EN5
Length = 372
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 131/363 (36%), Positives = 194/363 (53%)
Query: 92 KRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEA 147
KR+ E+T R +HVDMD FY A+E NP L+ KP+AVG + +ICTANY A
Sbjct: 12 KRLPVRESTSKKLRKIIHVDMDCFYVAIEMRDNPKLREKPVAVGGAAHSRGVICTANYIA 71
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R +GV++A+ A+KLCP LI +P + KY R +F +Y SLDEAYLD
Sbjct: 72 RGYGVQSAISSSYAKKLCPSLIILPVNMEKYRAIGHQIRGLFQEYTHLVEPLSLDEAYLD 131
Query: 208 ITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPN 266
+++ C+ S IA+E+R + + LT SAGVA N+LLAKV S NKPNG + +LP+
Sbjct: 132 VSD-CKIHQGSATRIAQEIREQIVKRHSLTASAGVASNKLLAKVASAWNKPNGIKVILPS 190
Query: 267 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 324
F+ +LPI KI G+GK+T ++ I+TC ++ L + +L + S +
Sbjct: 191 K---ADDFVKTLPIEKIHGVGKITAQKMK-AMNIHTCSDLQALSREALSKSFGSFGVTLY 246
Query: 325 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXX 384
L G+ S P R RKS+S E TFS +D A L E+A + + D+++
Sbjct: 247 ELCRGIDPRSVE-PN-RIRKSVSVEHTFS--QDIATLSECEIELANLFN-DLKQRLLKHT 301
Query: 385 XXXXXXXXASFEVRTRAVTLQKYISS--SEDILKHA--SVLLKAELPVSLRLIGLRVTQF 440
+ +T + I+ S D+ KH + + + PV RL+G+ V+ F
Sbjct: 302 DRCIRKQFVKIKFNDFKITKAETITQTISLDLFKHLLYQIFERQQKPV--RLLGVGVS-F 358
Query: 441 NED 443
+ED
Sbjct: 359 SED 361
>TIGR_CMR|CBU_0280 [details] [associations]
symbol:CBU_0280 "DNA-damage-inducible protein P"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003887 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:MNILNEY
RefSeq:NP_819324.2 GeneID:1208161 KEGG:cbu:CBU_0280 PATRIC:17929253
ProtClustDB:CLSK913950 BioCyc:CBUR227377:GJ7S-285-MONOMER
Uniprot:Q83EN5
Length = 372
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 131/363 (36%), Positives = 194/363 (53%)
Query: 92 KRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEA 147
KR+ E+T R +HVDMD FY A+E NP L+ KP+AVG + +ICTANY A
Sbjct: 12 KRLPVRESTSKKLRKIIHVDMDCFYVAIEMRDNPKLREKPVAVGGAAHSRGVICTANYIA 71
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R +GV++A+ A+KLCP LI +P + KY R +F +Y SLDEAYLD
Sbjct: 72 RGYGVQSAISSSYAKKLCPSLIILPVNMEKYRAIGHQIRGLFQEYTHLVEPLSLDEAYLD 131
Query: 208 ITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPN 266
+++ C+ S IA+E+R + + LT SAGVA N+LLAKV S NKPNG + +LP+
Sbjct: 132 VSD-CKIHQGSATRIAQEIREQIVKRHSLTASAGVASNKLLAKVASAWNKPNGIKVILPS 190
Query: 267 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADF 324
F+ +LPI KI G+GK+T ++ I+TC ++ L + +L + S +
Sbjct: 191 K---ADDFVKTLPIEKIHGVGKITAQKMK-AMNIHTCSDLQALSREALSKSFGSFGVTLY 246
Query: 325 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEXXXXX 384
L G+ S P R RKS+S E TFS +D A L E+A + + D+++
Sbjct: 247 ELCRGIDPRSVE-PN-RIRKSVSVEHTFS--QDIATLSECEIELANLFN-DLKQRLLKHT 301
Query: 385 XXXXXXXXASFEVRTRAVTLQKYISS--SEDILKHA--SVLLKAELPVSLRLIGLRVTQF 440
+ +T + I+ S D+ KH + + + PV RL+G+ V+ F
Sbjct: 302 DRCIRKQFVKIKFNDFKITKAETITQTISLDLFKHLLYQIFERQQKPV--RLLGVGVS-F 358
Query: 441 NED 443
+ED
Sbjct: 359 SED 361
>UNIPROTKB|Q71Y46 [details] [associations]
symbol:dinB "DNA polymerase IV" species:265669 "Listeria
monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 EMBL:AE017262 GenomeReviews:AE017262_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 OMA:MNILNEY ProtClustDB:PRK02406
RefSeq:YP_014591.1 ProteinModelPortal:Q71Y46 STRING:Q71Y46
GeneID:2798339 KEGG:lmf:LMOf2365_1998 PATRIC:20325291
Uniprot:Q71Y46
Length = 356
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 124/349 (35%), Positives = 185/349 (53%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYHLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXX 391
N P R RKS+ E TF D +L + L + A+ + + K
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKLR 292
Query: 392 XASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDTSQIYQAAALLLRESYTGQDSIRLIGLTVT 341
>UNIPROTKB|Q47155 [details] [associations]
symbol:dinB species:83333 "Escherichia coli K-12"
[GO:0006974 "response to DNA damage stimulus" evidence=IEP]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0019985
"translesion synthesis" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0009432 "SOS response"
evidence=IEP;IDA] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 EMBL:U70214 GO:GO:0000731
GO:GO:0009432 GO:GO:0003887 EMBL:D38582 GO:GO:0019985 PDB:1OK7
PDB:1UNN PDBsum:1OK7 PDBsum:1UNN KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 EMBL:AF483080
EMBL:AF483081 EMBL:AF483082 EMBL:AF483083 EMBL:AF483084
EMBL:AF483085 EMBL:AF483086 EMBL:AF483087 EMBL:AF483088
EMBL:AF483089 EMBL:AF483090 EMBL:AF483091 EMBL:AF483092
EMBL:AF483093 EMBL:AF483094 EMBL:AF483095 EMBL:AF483096
EMBL:AF483097 EMBL:AF483098 EMBL:AF483099 EMBL:AF483100
EMBL:AF483101 EMBL:AF483102 EMBL:AF483103 EMBL:AF483104
EMBL:AF483105 PIR:H64747 RefSeq:NP_414766.1 RefSeq:YP_488526.1
ProteinModelPortal:Q47155 SMR:Q47155 IntAct:Q47155
EnsemblBacteria:EBESCT00000002588 EnsemblBacteria:EBESCT00000014477
GeneID:12932684 GeneID:944922 KEGG:ecj:Y75_p0222 KEGG:eco:b0231
PATRIC:32115577 EchoBASE:EB2935 EcoGene:EG13141 OMA:MNILNEY
ProtClustDB:PRK02406 BioCyc:EcoCyc:G6115-MONOMER
BioCyc:ECOL316407:JW0221-MONOMER BioCyc:MetaCyc:G6115-MONOMER
EvolutionaryTrace:Q47155 Genevestigator:Q47155 Uniprot:Q47155
Length = 351
Score = 461 (167.3 bits), Expect = 1.2e-43, P = 1.2e-43
Identities = 113/280 (40%), Positives = 161/280 (57%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +HVDMD F+AAVE NP+L+ P+A+G +I TANY AR+FGVR+AMP +
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP L +P F Y S+ R++F +Y SLDEAYLD+T+ G S
Sbjct: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SAT 120
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 279
IA+E+R +++ E LT SAGVAP + LAK+ SD+NKPNGQFV+ P + V F+ +LP
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE---VPAFLQTLP 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL-SVGLGLGSTNTP 338
+ KI G+GKV+ L + G+ TC ++ QK L+ + L G+ +
Sbjct: 178 LAKIPGVGKVSAAKL-EAMGLRTCGDV-QKCDLVMLLKRFGKFGRILWERSQGIDERDVN 235
Query: 339 QARFRKSISSERTFSV-----TEDKALLYRKLAEIAEMLS 373
R RKS+ ERT + +E +A++ R E+ L+
Sbjct: 236 SERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLA 275
>UNIPROTKB|Q8EHU9 [details] [associations]
symbol:dinB "DNA polymerase IV" species:211586 "Shewanella
oneidensis MR-1" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005737 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003887
eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:MNILNEY
ProtClustDB:PRK02406 RefSeq:NP_716739.1 HSSP:Q9UHC5
ProteinModelPortal:Q8EHU9 GeneID:1168948 KEGG:son:SO_1114
PATRIC:23521872 Uniprot:Q8EHU9
Length = 357
Score = 461 (167.3 bits), Expect = 1.2e-43, P = 1.2e-43
Identities = 111/255 (43%), Positives = 147/255 (57%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +HVDMD ++AAVE P +GKP+AVG +I T NYEARRFGVR+AM
Sbjct: 2 RKIIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATAY 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A+KLCP+LI VP Y S R +F +Y SLDEAYLD+++ +G S
Sbjct: 62 AQKLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSDCKLHKG-SAT 120
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IAE +R + E GLT SAGVAP + LAKV SD+NKPNGQ+V+P D+ V FI +L +
Sbjct: 121 LIAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDK--VPEFIRTLSL 178
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
R+I G+GKVT L + G+NTC ++ K L+ F A + G+
Sbjct: 179 RQIPGVGKVTAEKLSSL-GLNTCGDVQTYPKQELITR-FGKFGA-VLIERAQGIDDRGLS 235
Query: 339 QARFRKSISSERTFS 353
+R RKS+ E T +
Sbjct: 236 VSRERKSVGVETTLA 250
>TIGR_CMR|SO_1114 [details] [associations]
symbol:SO_1114 "DNA-damage-inducible protein P"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 OMA:MNILNEY ProtClustDB:PRK02406
RefSeq:NP_716739.1 HSSP:Q9UHC5 ProteinModelPortal:Q8EHU9
GeneID:1168948 KEGG:son:SO_1114 PATRIC:23521872 Uniprot:Q8EHU9
Length = 357
Score = 461 (167.3 bits), Expect = 1.2e-43, P = 1.2e-43
Identities = 111/255 (43%), Positives = 147/255 (57%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +HVDMD ++AAVE P +GKP+AVG +I T NYEARRFGVR+AM
Sbjct: 2 RKIIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATAY 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A+KLCP+LI VP Y S R +F +Y SLDEAYLD+++ +G S
Sbjct: 62 AQKLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSDCKLHKG-SAT 120
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IAE +R + E GLT SAGVAP + LAKV SD+NKPNGQ+V+P D+ V FI +L +
Sbjct: 121 LIAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDK--VPEFIRTLSL 178
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
R+I G+GKVT L + G+NTC ++ K L+ F A + G+
Sbjct: 179 RQIPGVGKVTAEKLSSL-GLNTCGDVQTYPKQELITR-FGKFGA-VLIERAQGIDDRGLS 235
Query: 339 QARFRKSISSERTFS 353
+R RKS+ E T +
Sbjct: 236 VSRERKSVGVETTLA 250
>UNIPROTKB|Q74CQ6 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 HSSP:Q97W02 RefSeq:NP_952667.1
ProteinModelPortal:Q74CQ6 GeneID:2687433 KEGG:gsu:GSU1616
PATRIC:22026081 OMA:FETHTRA ProtClustDB:CLSK827609
BioCyc:GSUL243231:GH27-1576-MONOMER Uniprot:Q74CQ6
Length = 409
Score = 447 (162.4 bits), Expect = 5.5e-42, P = 5.5e-42
Identities = 117/361 (32%), Positives = 192/361 (53%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R+ LH+DM+AF+A+VE ++PSL+GKP+AV G ++I TA+YEAR GV M A
Sbjct: 5 RTILHLDMNAFFASVEQQADPSLQGKPVAVIGSGARTIITTASYEARAHGVGTGMTTHEA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCPELI V + +YT S L ++ ++ P S+DEA+LD+T R G + +
Sbjct: 65 KRLCPELILVIGNNREYTRISKLIFEMLGQFTPLVEVFSIDEAFLDLTGSLRLFGRADV- 123
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA E++ + + GLTCS G+APN+LLAK+ SD+ KP+G ++P + +A + + + PIR
Sbjct: 124 IAREIKARIRDRFGLTCSIGIAPNKLLAKLASDMQKPDGLTIIPPENVA--SLMKTTPIR 181
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN---TP 338
+ GIG TE L+ GI+TC ++ S + + +G G+ + T
Sbjct: 182 SLCGIGPSTEQRLK-YLGISTCNDLGHFSSKILTRHFGAMGARLKQMGQGIDDSPVIPTT 240
Query: 339 QARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASFEV 397
KS+S T +K +++ L ++EM+ ++ A F
Sbjct: 241 TEEEVKSVSHSTTLDHDLTNKDDIHKYLLMLSEMVGRRARRYKTKGKTVTLTIRYADFTT 300
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTL 456
+R TL ++ S DI + + LL +L +RL+G+ ++ + P P ++ L
Sbjct: 301 FSRQETLPSPLNRSGDIYRAVTALLDTLQLTQPIRLLGVAISNLVHASEQLPLFPEERRL 360
Query: 457 T 457
T
Sbjct: 361 T 361
>TIGR_CMR|GSU_1616 [details] [associations]
symbol:GSU_1616 "ImpB/MucB/SamB family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 HSSP:Q97W02 RefSeq:NP_952667.1
ProteinModelPortal:Q74CQ6 GeneID:2687433 KEGG:gsu:GSU1616
PATRIC:22026081 OMA:FETHTRA ProtClustDB:CLSK827609
BioCyc:GSUL243231:GH27-1576-MONOMER Uniprot:Q74CQ6
Length = 409
Score = 447 (162.4 bits), Expect = 5.5e-42, P = 5.5e-42
Identities = 117/361 (32%), Positives = 192/361 (53%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R+ LH+DM+AF+A+VE ++PSL+GKP+AV G ++I TA+YEAR GV M A
Sbjct: 5 RTILHLDMNAFFASVEQQADPSLQGKPVAVIGSGARTIITTASYEARAHGVGTGMTTHEA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCPELI V + +YT S L ++ ++ P S+DEA+LD+T R G + +
Sbjct: 65 KRLCPELILVIGNNREYTRISKLIFEMLGQFTPLVEVFSIDEAFLDLTGSLRLFGRADV- 123
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA E++ + + GLTCS G+APN+LLAK+ SD+ KP+G ++P + +A + + + PIR
Sbjct: 124 IAREIKARIRDRFGLTCSIGIAPNKLLAKLASDMQKPDGLTIIPPENVA--SLMKTTPIR 181
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN---TP 338
+ GIG TE L+ GI+TC ++ S + + +G G+ + T
Sbjct: 182 SLCGIGPSTEQRLK-YLGISTCNDLGHFSSKILTRHFGAMGARLKQMGQGIDDSPVIPTT 240
Query: 339 QARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASFEV 397
KS+S T +K +++ L ++EM+ ++ A F
Sbjct: 241 TEEEVKSVSHSTTLDHDLTNKDDIHKYLLMLSEMVGRRARRYKTKGKTVTLTIRYADFTT 300
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTL 456
+R TL ++ S DI + + LL +L +RL+G+ ++ + P P ++ L
Sbjct: 301 FSRQETLPSPLNRSGDIYRAVTALLDTLQLTQPIRLLGVAISNLVHASEQLPLFPEERRL 360
Query: 457 T 457
T
Sbjct: 361 T 361
>TIGR_CMR|CPS_1040 [details] [associations]
symbol:CPS_1040 "DNA polymerase IV" species:167879
"Colwellia psychrerythraea 34H" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR003583
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00278
GO:GO:0005737 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003887
eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 RefSeq:YP_267789.1
HSSP:Q9UNA4 ProteinModelPortal:Q487H6 STRING:Q487H6 GeneID:3521759
KEGG:cps:CPS_1040 PATRIC:21465357 OMA:QSLGMRT
BioCyc:CPSY167879:GI48-1126-MONOMER Uniprot:Q487H6
Length = 352
Score = 425 (154.7 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
Identities = 103/262 (39%), Positives = 148/262 (56%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIARKL 164
+H+DMD FYAA+E P + P+AVG S++CT+NY+AR+FGVR+AMP A++L
Sbjct: 8 IHIDMDCFYAAIEMRDFPEYQNIPLAVGGDGPRSVLCTSNYQARQFGVRSAMPAIKAKQL 67
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 224
CP L V Y S R++F +Y SLDEAYLD+T+ +G S IAE
Sbjct: 68 CPHLKIVHGRMDVYKETSKNIREIFSRYTDLIEPLSLDEAYLDVTDATMCQG-SATLIAE 126
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 284
+R ++ E LT SAG+APN+ LAK+ SD NKPNGQ V+ D++A F+ L ++KI
Sbjct: 127 RIRADIFNELNLTASAGIAPNKFLAKIASDENKPNGQCVITPDKVA--NFVEQLSLKKIP 184
Query: 285 GIG-KVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARF 342
GIG K E + R G TC ++ Q L + +L G+ + + +R
Sbjct: 185 GIGPKTFEKLNRH--GYVTCADVRQSNIRALQNIVGKFANSLYLK-SHGVDNRDLEVSRQ 241
Query: 343 RKSISSERTFS---VTEDKALL 361
RKS++ E T + T+D+ L
Sbjct: 242 RKSLAIETTLAHDISTQDECKL 263
Score = 39 (18.8 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 433 IGLRVTQFNEDKVRAPSDPTQKTL 456
+ L+ T FN+ V S+ Q+ L
Sbjct: 289 VKLKFTDFNQTTVETQSNECQQAL 312
>TIGR_CMR|CHY_1651 [details] [associations]
symbol:CHY_1651 "DNA polymerase IV - AMBIGUITY"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 HOGENOM:HOG000082710 RefSeq:YP_360472.1
HSSP:P96022 ProteinModelPortal:Q3ABL2 STRING:Q3ABL2 GeneID:3726655
KEGG:chy:CHY_1651 PATRIC:21276423 OMA:GNREIFQ
ProtClustDB:CLSK2464724 BioCyc:CHYD246194:GJCN-1650-MONOMER
Uniprot:Q3ABL2
Length = 391
Score = 428 (155.7 bits), Expect = 8.1e-40, P = 8.1e-40
Identities = 117/342 (34%), Positives = 179/342 (52%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTM----SMICTANYEARRFGVRAAMPGFIARK 163
+HVDMDAF+AAVE NP LKGKP+ VG + ++ A+YEAR+FGVR+AM + A +
Sbjct: 7 IHVDMDAFFAAVEQRDNPELKGKPVIVGGVPGERGVVAAASYEARKFGVRSAMSLWEAAR 66
Query: 164 LCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIA 223
LCP IF+P + KY S+ ++F +Y P SLDEAYLD+T + G G EI
Sbjct: 67 LCPHGIFIPGNHKKYQEVSEKIFRIFREYTPLVEPVSLDEAYLDVTGSQKLFG-PGAEIG 125
Query: 224 EELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKI 283
++++ ++EE LT S GVAPN+ LAK+ S++NKP+G + D V+ F++ LP+ +
Sbjct: 126 KKIKKRIFEETELTASVGVAPNKFLAKLASEVNKPDGFCEVREDN--VLDFLAPLPVEML 183
Query: 284 GGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTAD-FFLSVGLGLGSTNTPQAR 341
G+G+ + L D+ GI T ++ + L F + ++LS G+ P+ R
Sbjct: 184 WGVGEKMKERLNDM-GIKTVQDFWELPEFFLRKKFGVLGQNLYYLSRGIDFREV-IPE-R 240
Query: 342 FRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASFEVRTR 400
KS+ E T + D L KL + + +++E +SF TR
Sbjct: 241 VPKSLGKEITLQKDSSDVDYLLGKLLGLTMAVGRGLRREGFYAGGISVKIRLSSFITYTR 300
Query: 401 AVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVT 438
+ + + + A L ELPV RL+G+ T
Sbjct: 301 HSRFFEPTWMDDVLYREAKRLFLENYHGELPV--RLVGVTAT 340
>UNIPROTKB|Q3ZAI3 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 HSSP:P96022 RefSeq:YP_180766.1
ProteinModelPortal:Q3ZAI3 STRING:Q3ZAI3 GeneID:3229123
KEGG:det:DET0011 PATRIC:21607125 OMA:PDGITIL ProtClustDB:CLSK836830
BioCyc:DETH243164:GJNF-11-MONOMER Uniprot:Q3ZAI3
Length = 390
Score = 414 (150.8 bits), Expect = 3.0e-38, P = 3.0e-38
Identities = 108/360 (30%), Positives = 178/360 (49%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +HVD+DAF+ +VE P LK KP+ VG ++ A+YEAR+FG+ + MP
Sbjct: 4 RRVMHVDLDAFFVSVEQSLRPELKSKPVIVGGKPERRGVVAAASYEARKFGIHSGMPLLS 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A+ LCP+ +F+ + Y YS+ ++ + P LDEAYL++T G G
Sbjct: 64 AKHLCPQAVFIEGNHRLYREYSEKFMQILSDFSPFLEPMGLDEAYLEVTGFESLHGSIG- 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A ++R + E + S G+A ++++AK+ ++ KPNGQ +P A F++ L I
Sbjct: 123 EMALKIRRRITAELSINASIGIANSKVVAKIATERAKPNGQCEVPAGEEAA--FLAPLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+ GIGK TE+ L+ + GINT + + + + A + L+ G+ +
Sbjct: 181 SIMPGIGKKTEYHLKSL-GINTLGRLAGIPATFLKIHLGTYAPYLLNAAAGIDNRPVEMP 239
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASFEVRT 399
KSIS E TF T + L KL ++E ++A ++K A F T
Sbjct: 240 AEAKSISRETTFETDTRNHTFLEAKLGYLSEKIAATLRKRGKQARVVQIKIRFADFTTLT 299
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQFNEDKVRAPSDPTQKTL 456
R L S +++I + A L+ L S+RL+G+ ++ F + + DP + L
Sbjct: 300 RQKHLNHPCSGNQEIFQTALKLMNGILDSDRRSVRLLGVGISDFCGPEKQLEIDPARARL 359
>TIGR_CMR|DET_0011 [details] [associations]
symbol:DET_0011 "DNA polymerase IV, putative"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 GO:GO:0006281
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0003887
eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 HSSP:P96022
RefSeq:YP_180766.1 ProteinModelPortal:Q3ZAI3 STRING:Q3ZAI3
GeneID:3229123 KEGG:det:DET0011 PATRIC:21607125 OMA:PDGITIL
ProtClustDB:CLSK836830 BioCyc:DETH243164:GJNF-11-MONOMER
Uniprot:Q3ZAI3
Length = 390
Score = 414 (150.8 bits), Expect = 3.0e-38, P = 3.0e-38
Identities = 108/360 (30%), Positives = 178/360 (49%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +HVD+DAF+ +VE P LK KP+ VG ++ A+YEAR+FG+ + MP
Sbjct: 4 RRVMHVDLDAFFVSVEQSLRPELKSKPVIVGGKPERRGVVAAASYEARKFGIHSGMPLLS 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A+ LCP+ +F+ + Y YS+ ++ + P LDEAYL++T G G
Sbjct: 64 AKHLCPQAVFIEGNHRLYREYSEKFMQILSDFSPFLEPMGLDEAYLEVTGFESLHGSIG- 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A ++R + E + S G+A ++++AK+ ++ KPNGQ +P A F++ L I
Sbjct: 123 EMALKIRRRITAELSINASIGIANSKVVAKIATERAKPNGQCEVPAGEEAA--FLAPLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+ GIGK TE+ L+ + GINT + + + + A + L+ G+ +
Sbjct: 181 SIMPGIGKKTEYHLKSL-GINTLGRLAGIPATFLKIHLGTYAPYLLNAAAGIDNRPVEMP 239
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASFEVRT 399
KSIS E TF T + L KL ++E ++A ++K A F T
Sbjct: 240 AEAKSISRETTFETDTRNHTFLEAKLGYLSEKIAATLRKRGKQARVVQIKIRFADFTTLT 299
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQFNEDKVRAPSDPTQKTL 456
R L S +++I + A L+ L S+RL+G+ ++ F + + DP + L
Sbjct: 300 RQKHLNHPCSGNQEIFQTALKLMNGILDSDRRSVRLLGVGISDFCGPEKQLEIDPARARL 359
>UNIPROTKB|Q74H50 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 SUPFAM:SSF100879
HOGENOM:HOG000082710 HSSP:P96022 ProtClustDB:CLSK827609
RefSeq:NP_951105.1 ProteinModelPortal:Q74H50 GeneID:2688550
KEGG:gsu:GSU0043 PATRIC:22022827 OMA:ANRIILH
BioCyc:GSUL243231:GH27-86-MONOMER Uniprot:Q74H50
Length = 413
Score = 413 (150.4 bits), Expect = 4.0e-38, P = 4.0e-38
Identities = 119/354 (33%), Positives = 186/354 (52%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV-GT-MSMICTANYEARRFGVRAAMPGFIAR 162
R+ LH+DM+AF+A+VE +NPSL+GKP+AV G+ +++ TA+YEAR FGV+ M + A
Sbjct: 9 RTILHIDMNAFFASVEQQANPSLQGKPIAVVGSGRTVVTTASYEARAFGVKTGMNKWEAL 68
Query: 163 KLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEI 222
+ CP LI V D KYT+ S ++F + P S+DEA+LD+T G S I
Sbjct: 69 QACPHLILVVGDNRKYTHTSTQINRIFRDFTPEVETFSIDEAFLDVTGSLALFG-SAETI 127
Query: 223 AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPIR 281
A ++ + GLTCS G+APN+LLAK+ SD+ KP+G ++ P + +M I PI+
Sbjct: 128 ACRIKALIRHRFGLTCSIGIAPNKLLAKLASDMKKPDGLTIIRPEEVTRLMEII---PIQ 184
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLG-STNTP- 338
+ GIG T L + GI TC E+ + +L F D +G G+ S P
Sbjct: 185 DLCGIGVKTRKQLNSL-GIQTCGELGRFPVEILRRTFG-VIGDRLHLMGKGIDDSPVVPV 242
Query: 339 -QARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASF 395
+A KS+ T +T + +L + L +++EM+ ++ A F
Sbjct: 243 EEAEEVKSVGHSMTLDRDLTARRDIL-KYLLQLSEMVGRRARRYGVAGKTVHLTIRYADF 301
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFNEDKVRAP 448
+ T + +S+E+I A +L EL +RL+G+R+T + + P
Sbjct: 302 TTVGKQQTRNQATNSTEEIYAEAVKILDTFELLQPVRLLGVRITNLCYQREQLP 355
>TIGR_CMR|GSU_0043 [details] [associations]
symbol:GSU_0043 "ImpB/MucB/SamB family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003887 KO:K02346 Gene3D:3.30.1490.100 SUPFAM:SSF100879
HOGENOM:HOG000082710 HSSP:P96022 ProtClustDB:CLSK827609
RefSeq:NP_951105.1 ProteinModelPortal:Q74H50 GeneID:2688550
KEGG:gsu:GSU0043 PATRIC:22022827 OMA:ANRIILH
BioCyc:GSUL243231:GH27-86-MONOMER Uniprot:Q74H50
Length = 413
Score = 413 (150.4 bits), Expect = 4.0e-38, P = 4.0e-38
Identities = 119/354 (33%), Positives = 186/354 (52%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV-GT-MSMICTANYEARRFGVRAAMPGFIAR 162
R+ LH+DM+AF+A+VE +NPSL+GKP+AV G+ +++ TA+YEAR FGV+ M + A
Sbjct: 9 RTILHIDMNAFFASVEQQANPSLQGKPIAVVGSGRTVVTTASYEARAFGVKTGMNKWEAL 68
Query: 163 KLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEI 222
+ CP LI V D KYT+ S ++F + P S+DEA+LD+T G S I
Sbjct: 69 QACPHLILVVGDNRKYTHTSTQINRIFRDFTPEVETFSIDEAFLDVTGSLALFG-SAETI 127
Query: 223 AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPIR 281
A ++ + GLTCS G+APN+LLAK+ SD+ KP+G ++ P + +M I PI+
Sbjct: 128 ACRIKALIRHRFGLTCSIGIAPNKLLAKLASDMKKPDGLTIIRPEEVTRLMEII---PIQ 184
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLG-STNTP- 338
+ GIG T L + GI TC E+ + +L F D +G G+ S P
Sbjct: 185 DLCGIGVKTRKQLNSL-GIQTCGELGRFPVEILRRTFG-VIGDRLHLMGKGIDDSPVVPV 242
Query: 339 -QARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASF 395
+A KS+ T +T + +L + L +++EM+ ++ A F
Sbjct: 243 EEAEEVKSVGHSMTLDRDLTARRDIL-KYLLQLSEMVGRRARRYGVAGKTVHLTIRYADF 301
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFNEDKVRAP 448
+ T + +S+E+I A +L EL +RL+G+R+T + + P
Sbjct: 302 TTVGKQQTRNQATNSTEEIYAEAVKILDTFELLQPVRLLGVRITNLCYQREQLP 355
>UNIPROTKB|Q9KPS5 [details] [associations]
symbol:dinB "DNA polymerase IV" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01113 InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 InterPro:IPR022880
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003887
eggNOG:COG0389 KO:K02346 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 OMA:QSLGMRT ProtClustDB:PRK02406
PIR:G82093 RefSeq:NP_231918.1 ProteinModelPortal:Q9KPS5
DNASU:2613209 GeneID:2613209 KEGG:vch:VC2287 PATRIC:20083613
Uniprot:Q9KPS5
Length = 360
Score = 398 (145.2 bits), Expect = 1.8e-36, P = 1.8e-36
Identities = 101/258 (39%), Positives = 141/258 (54%)
Query: 101 RDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAM 156
+D R +HVDMD F+AAVE NP+ + +AVG +I T NY+AR+FGVR+AM
Sbjct: 2 QDRIRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAM 61
Query: 157 PGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERG 216
P A KLCP+L VP + Y S + +F +Y SLDEAYLD++E +G
Sbjct: 62 PTAQALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQG 121
Query: 217 ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 276
S IA+ +R +++E LT SAGVAP + LAKV SD+NKP+G +V+ D++ M +
Sbjct: 122 -SATLIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEM--VD 178
Query: 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGST 335
SLP+ KI G+GKV L G+ ++ + L F A + G+
Sbjct: 179 SLPLEKIPGVGKVALEKLHQA-GLYVGADVRRADYRKLLHQFGRLGASLWKK-SHGIDER 236
Query: 336 NTPQARFRKSISSERTFS 353
R RKS+ E TFS
Sbjct: 237 EVVTERERKSVGVEYTFS 254
>TIGR_CMR|VC_2287 [details] [associations]
symbol:VC_2287 "DNA-damage-inducible protein P" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0003887 eggNOG:COG0389 KO:K02346 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 OMA:QSLGMRT
ProtClustDB:PRK02406 PIR:G82093 RefSeq:NP_231918.1
ProteinModelPortal:Q9KPS5 DNASU:2613209 GeneID:2613209
KEGG:vch:VC2287 PATRIC:20083613 Uniprot:Q9KPS5
Length = 360
Score = 398 (145.2 bits), Expect = 1.8e-36, P = 1.8e-36
Identities = 101/258 (39%), Positives = 141/258 (54%)
Query: 101 RDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAM 156
+D R +HVDMD F+AAVE NP+ + +AVG +I T NY+AR+FGVR+AM
Sbjct: 2 QDRIRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAM 61
Query: 157 PGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERG 216
P A KLCP+L VP + Y S + +F +Y SLDEAYLD++E +G
Sbjct: 62 PTAQALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQG 121
Query: 217 ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 276
S IA+ +R +++E LT SAGVAP + LAKV SD+NKP+G +V+ D++ M +
Sbjct: 122 -SATLIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEM--VD 178
Query: 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGST 335
SLP+ KI G+GKV L G+ ++ + L F A + G+
Sbjct: 179 SLPLEKIPGVGKVALEKLHQA-GLYVGADVRRADYRKLLHQFGRLGASLWKK-SHGIDER 236
Query: 336 NTPQARFRKSISSERTFS 353
R RKS+ E TFS
Sbjct: 237 EVVTERERKSVGVEYTFS 254
>UNIPROTKB|Q81M86 [details] [associations]
symbol:dinB "DNA polymerase IV" species:1392 "Bacillus
anthracis" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 RefSeq:NP_846596.1 RefSeq:YP_021011.1
RefSeq:YP_030301.1 ProteinModelPortal:Q81M86
EnsemblBacteria:EBBACT00000012953 EnsemblBacteria:EBBACT00000016454
EnsemblBacteria:EBBACT00000021276 GeneID:1087598 GeneID:2818956
GeneID:2848139 KEGG:ban:BA_4366 KEGG:bar:GBAA_4366 KEGG:bat:BAS4051
HOGENOM:HOG000082710 OMA:GDQIRRI ProtClustDB:PRK01810
BioCyc:BANT260799:GJAJ-4108-MONOMER
BioCyc:BANT261594:GJ7F-4248-MONOMER InterPro:IPR025188 Pfam:PF13438
Uniprot:Q81M86
Length = 412
Score = 385 (140.6 bits), Expect = 5.0e-35, P = 5.0e-35
Identities = 116/343 (33%), Positives = 172/343 (50%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVG-----TMSMICTANYEARRFGVRAAMPGFIAR 162
LHVDM+ F+A+VE + SL+GKP+AV +I T +YEAR +G+R MP + A+
Sbjct: 13 LHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPLWEAK 72
Query: 163 KLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEI 222
+LCP+LI +FT Y S ++ ++ S+DE YLDIT+ C G S +EI
Sbjct: 73 RLCPQLIVRRPNFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITD-CYALG-SPLEI 130
Query: 223 AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRK 282
A+ ++ ++ E L CS G+APN LAK SD+ KP G VL + M I LP+
Sbjct: 131 AKMIQQALLTELQLPCSIGIAPNLFLAKTASDMKKPLGITVLRKRDIPEM--IWPLPVGA 188
Query: 283 IGGIGKVTEHILRDVFGINTCEEMLQKGS--LLCAVFSHSTADFFLSV-GLGLGSTNTPQ 339
+ GIG+ T L D+ I T E+ L KG+ ++ A D G+ + Q
Sbjct: 189 MHGIGEKTAEKLNDIH-IQTIEQ-LAKGNEHIIRAKIGKHGVDLQRRAKGMDDREVDPSQ 246
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASFEV 397
KS+ + TFS + E+K LL L +++ +S +QK
Sbjct: 247 MGQHKSVGNSMTFSKDMDEEKELL-DMLQRLSKSVSKRLQKRTLVSYNIQIMIKYHDRRT 305
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQ 439
TR+ L+ I DI + AS L K S+RL+G+ T+
Sbjct: 306 VTRSKQLKNAIWEERDIFQAASRLWKQHWDGDSVRLLGVTATE 348
>TIGR_CMR|BA_4366 [details] [associations]
symbol:BA_4366 "DNA-damage-inducible protein P, putative"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 RefSeq:NP_846596.1 RefSeq:YP_021011.1
RefSeq:YP_030301.1 ProteinModelPortal:Q81M86
EnsemblBacteria:EBBACT00000012953 EnsemblBacteria:EBBACT00000016454
EnsemblBacteria:EBBACT00000021276 GeneID:1087598 GeneID:2818956
GeneID:2848139 KEGG:ban:BA_4366 KEGG:bar:GBAA_4366 KEGG:bat:BAS4051
HOGENOM:HOG000082710 OMA:GDQIRRI ProtClustDB:PRK01810
BioCyc:BANT260799:GJAJ-4108-MONOMER
BioCyc:BANT261594:GJ7F-4248-MONOMER InterPro:IPR025188 Pfam:PF13438
Uniprot:Q81M86
Length = 412
Score = 385 (140.6 bits), Expect = 5.0e-35, P = 5.0e-35
Identities = 116/343 (33%), Positives = 172/343 (50%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVG-----TMSMICTANYEARRFGVRAAMPGFIAR 162
LHVDM+ F+A+VE + SL+GKP+AV +I T +YEAR +G+R MP + A+
Sbjct: 13 LHVDMNCFFASVEIAHDSSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPLWEAK 72
Query: 163 KLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEI 222
+LCP+LI +FT Y S ++ ++ S+DE YLDIT+ C G S +EI
Sbjct: 73 RLCPQLIVRRPNFTLYREASFQMFQILSRFTEKIQPVSIDEGYLDITD-CYALG-SPLEI 130
Query: 223 AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRK 282
A+ ++ ++ E L CS G+APN LAK SD+ KP G VL + M I LP+
Sbjct: 131 AKMIQQALLTELQLPCSIGIAPNLFLAKTASDMKKPLGITVLRKRDIPEM--IWPLPVGA 188
Query: 283 IGGIGKVTEHILRDVFGINTCEEMLQKGS--LLCAVFSHSTADFFLSV-GLGLGSTNTPQ 339
+ GIG+ T L D+ I T E+ L KG+ ++ A D G+ + Q
Sbjct: 189 MHGIGEKTAEKLNDIH-IQTIEQ-LAKGNEHIIRAKIGKHGVDLQRRAKGMDDREVDPSQ 246
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASFEV 397
KS+ + TFS + E+K LL L +++ +S +QK
Sbjct: 247 MGQHKSVGNSMTFSKDMDEEKELL-DMLQRLSKSVSKRLQKRTLVSYNIQIMIKYHDRRT 305
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQ 439
TR+ L+ I DI + AS L K S+RL+G+ T+
Sbjct: 306 VTRSKQLKNAIWEERDIFQAASRLWKQHWDGDSVRLLGVTATE 348
>UNIPROTKB|Q0BZW2 [details] [associations]
symbol:dinB "DNA polymerase IV" species:228405 "Hyphomonas
neptunium ATCC 15444" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005737 GO:GO:0000287 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 GO:GO:0006261 EMBL:CP000158 GenomeReviews:CP000158_GR
GO:GO:0003887 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 RefSeq:YP_760981.1 ProteinModelPortal:Q0BZW2
STRING:Q0BZW2 GeneID:4289730 KEGG:hne:HNE_2286 PATRIC:32217415
OMA:PALCRDC ProtClustDB:PRK02794
BioCyc:HNEP228405:GI69-2308-MONOMER Uniprot:Q0BZW2
Length = 424
Score = 382 (139.5 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 111/343 (32%), Positives = 167/343 (48%)
Query: 109 HVDMDAFYAAVETLSNPSLKGKPMAVG--TMSMICTANYEARRFGVRAAMPGFIARKLCP 166
HVD DAFYA+VE NP+LK KP+ VG ++ T Y AR +GVR+AMP F A K CP
Sbjct: 40 HVDCDAFYASVEKRDNPTLKDKPLIVGGGQRGVVTTCCYIARLYGVRSAMPMFKALKACP 99
Query: 167 ELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEEL 226
+ + VP DF KY + R P S+DEAYLD++ R G L
Sbjct: 100 DAVVVPPDFRKYREAAKAIRAEMDHLTPLVQQVSIDEAYLDLSGTDRLHGAPPAASLARL 159
Query: 227 RTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLPIRKIGG 285
+V E G+T S G++ N+ LAK S+++KP G + P + A F++ P+ + G
Sbjct: 160 AKNVEREVGVTVSVGLSSNKFLAKTASELDKPRGFAIIAPEEAEA---FLAPHPVGFLHG 216
Query: 286 IG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHS-TADFFLSVGLGLGSTNTPQARFR 343
+G K E + +D G T E+ +QK L + + T D+ G + R
Sbjct: 217 VGPKFAESLNKD--GFYTIED-IQKADLKSLIRRYGETGDWLKRCAHGRDNRKVNPHEDR 273
Query: 344 KSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQK-EXXXXXXXXXXXXXASFEVRTRA 401
KS+SSE TF T D +L L ++ + +AD K E + F TR
Sbjct: 274 KSVSSETTFFEDTADIGILEDHLWRLS-VKTADRAKAEGVSGRVVTLKLKTSDFHPLTRR 332
Query: 402 VTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQFNE 442
++L + ++ + + + LL E V RLIG+ ++ ++
Sbjct: 333 LSLTEPTQLAQVVFRASRPLLLKEATGRVKYRLIGVGLSDLSD 375
>UNIPROTKB|P63987 [details] [associations]
symbol:dinB2 "DNA polymerase IV 2" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005829 GO:GO:0005886 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:BX842581 GO:GO:0003887 eggNOG:COG0389
HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
SUPFAM:SSF100879 PIR:A70649 RefSeq:NP_217572.1 RefSeq:NP_337660.1
RefSeq:YP_006516517.1 ProteinModelPortal:P63987 SMR:P63987
EnsemblBacteria:EBMYCT00000003933 EnsemblBacteria:EBMYCT00000069414
GeneID:13317860 GeneID:887519 GeneID:923303 KEGG:mtc:MT3142
KEGG:mtu:Rv3056 KEGG:mtv:RVBD_3056 PATRIC:18128668
TubercuList:Rv3056 OMA:IIAHIDI ProtClustDB:PRK03352 Uniprot:P63987
Length = 346
Score = 315 (115.9 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 106/347 (30%), Positives = 168/347 (48%)
Query: 107 W-LHVDMDAFYAAVETLSNPSLKGKPMAVG-------TMSMICTANYEARRFGVRAAMPG 158
W LHVD+D F A+VE L +P L G P+ VG ++ A+YEAR +GVRA MP
Sbjct: 8 WILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMPL 67
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS 218
A + CPE F+P++ Y S+ + DEAYL + +
Sbjct: 68 RTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGTPD---D 124
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR-MAVMTFISS 277
IE+AEE+R + + GL+CS G++ N+ AK+ + + KP G + L + MA+M
Sbjct: 125 PIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIM---GD 181
Query: 278 LPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGS-LLCAVFSHSTADFFLSVGLGLGST 335
+ + G+G K T+ + + GINT ++ S LL + F TA +L + G G T
Sbjct: 182 RTVEALWGVGPKTTKRLAK--LGINTVYQLAHTDSGLLMSTFGPRTA-LWLLLAKGGGDT 238
Query: 336 N-TPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXX 392
+ QA +S S TF +T ++ + + E+A+ ++
Sbjct: 239 EVSAQAWVPRSRSHAVTFPRDLT-CRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRT 297
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHAS--VLLKAELPVSLRLIGLRV 437
A+F RT+ LQ S+ D++ A+ VL EL +RL+G+R+
Sbjct: 298 ATFYTRTKIRKLQAP-STDPDVITAAARHVLDLFELDRPVRLLGVRL 343
>UNIPROTKB|D6RDX9 [details] [associations]
symbol:POLK "DNA polymerase kappa" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017963 Pfam:PF00817
PROSITE:PS50173 GO:GO:0005634 GO:GO:0003684 GO:GO:0006281
EMBL:AC010245 EMBL:AC116341 GO:GO:0003887 HOGENOM:HOG000082711
HGNC:HGNC:9183 EMBL:AC026424 IPI:IPI01018200
ProteinModelPortal:D6RDX9 SMR:D6RDX9 Ensembl:ENST00000514296
UCSC:uc003kdz.2 BindingDB:D6RDX9 ArrayExpress:D6RDX9 Bgee:D6RDX9
Uniprot:D6RDX9
Length = 141
Score = 313 (115.2 bits), Expect = 3.6e-27, P = 3.6e-27
Identities = 59/117 (50%), Positives = 87/117 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANY 145
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNY 141
>TIGR_CMR|SPO_3280 [details] [associations]
symbol:SPO_3280 "DNA polymerase IV, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005737 GO:GO:0000287 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003684 GO:GO:0006281 GO:GO:0006261
GO:GO:0003887 HOGENOM:HOG000082707 KO:K02346 Gene3D:3.30.1490.100
SUPFAM:SSF100879 OMA:PALCRDC ProtClustDB:PRK02794
RefSeq:YP_168477.1 ProteinModelPortal:Q5LND1 GeneID:3193147
KEGG:sil:SPO3280 PATRIC:23380003 Uniprot:Q5LND1
Length = 420
Score = 311 (114.5 bits), Expect = 5.9e-27, P = 5.9e-27
Identities = 98/317 (30%), Positives = 146/317 (46%)
Query: 109 HVDMDAFYAAVETLSNPSLKGKPMAVG--TMSMICTANYEARRFGVRAAMPGFIARKLCP 166
H+D DAFYA+VE NP L KP+ +G ++ TA Y AR GVR+AMP F A KLCP
Sbjct: 42 HMDCDAFYASVEKRDNPDLADKPVIIGGGKRGVVSTACYVARIRGVRSAMPMFQALKLCP 101
Query: 167 ELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEEL 226
E + + + Y S R + + P SLDEA++D++ R G + L
Sbjct: 102 EAVVIKPRMSVYAEVSKQIRALMDELTPVVEPLSLDEAFMDLSGTQRLHGHPPAVMLARL 161
Query: 227 RTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGI 286
+ +E G+T S G++ N+ LAKV SD+ KP G V+ R F+ P+R I GI
Sbjct: 162 VKRMKDELGVTGSIGLSHNKFLAKVASDLEKPRGFSVI--GRAETAEFLRDKPVRLIWGI 219
Query: 287 GKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKS 345
G + L GI T ++L+ + L A F + + G KS
Sbjct: 220 GPAAQESLERA-GIRTFTDLLRWEQEALVARFG-AMGQRLWHLARGEDRRRVSAHDPIKS 277
Query: 346 ISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXASFEVRTRAVTL 404
IS+E TF T D +L + +AE ++ + A+ V +R +L
Sbjct: 278 ISNETTFFEDTGDADVLDGHIWRMAEKVADRAKARGLAGRVVTLKLKRANHRVLSRQQSL 337
Query: 405 QKYISSSEDILKHASVL 421
+ ++ I + A L
Sbjct: 338 RDPTQMADRIYRTARAL 354
>UNIPROTKB|F1PDA5 [details] [associations]
symbol:POLI "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:VFYELPE EMBL:AAEX03000145 Ensembl:ENSCAFT00000000242
Uniprot:F1PDA5
Length = 702
Score = 214 (80.4 bits), Expect = 3.6e-25, Sum P(2) = 3.6e-25
Identities = 44/113 (38%), Positives = 67/113 (59%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARK 163
+R +HVD+D FYA VE +SNP LKGKP+ V ++ T NYEAR+ GV+ M A++
Sbjct: 13 ARVIVHVDLDCFYAQVEMISNPELKGKPLGVQQKYLVVTCNYEARKLGVKKLMNVRDAKE 72
Query: 164 LCPELIFVP-TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 215
CP+L+ V D T+Y S ++ ++ P DE ++D+TE+ +R
Sbjct: 73 KCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKR 125
Score = 156 (60.0 bits), Expect = 3.6e-25, Sum P(2) = 3.6e-25
Identities = 51/172 (29%), Positives = 89/172 (51%)
Query: 205 YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 264
Y+++ ++ R + G +IA E+R ++Y + GLT AGVA N+LLAK+ S + KPN Q VL
Sbjct: 148 YINLHDILHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVL 207
Query: 265 PNDRMAVMTFISSLP-IRKIGGIGKVTEHILRDVFGINTCEEMLQKGS-LLCAVFSHSTA 322
+ V+ I SL ++++ GIG T L + GI++ ++ S +L S A
Sbjct: 208 LPESSQVL--IQSLNHVKEMPGIGYKTAKRL-EALGISSVYDLQTFSSKILEKELGISVA 264
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI-AEMLS 373
+ G ++ + +S S E +F + + K+ E+ A +L+
Sbjct: 265 QRIQKLSFGEDNSPVTPSGPPQSFSEEDSFKKCSSEVEVKNKIEELLASLLN 316
Score = 52 (23.4 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 25/97 (25%), Positives = 42/97 (43%)
Query: 488 DKETSVSLDVSETNNYEFGD---PVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLE 544
+KE +S+ FG+ PV + P E SF SEVE +N++ +LL
Sbjct: 256 EKELGISV-AQRIQKLSFGEDNSPVTPSGPPQSFSEEDSFKKCSSEVEV--KNKIEELLA 312
Query: 545 GNSLVLRQ-EEGSCCDGVEEVDKDITPDNKVGTSSNQ 580
SL+ R ++G + + + + +N S Q
Sbjct: 313 --SLLNRVCQDGRKPHTIRLIIRRYSSENHCSRESRQ 347
Score = 47 (21.6 bits), Expect = 8.2e-14, Sum P(2) = 8.2e-14
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 408 ISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRA-PSDPTQ 453
ISS D+ +S +L+ EL +S+ ++ F ED PS P Q
Sbjct: 241 ISSVYDLQTFSSKILEKELGISVAQ-RIQKLSFGEDNSPVTPSGPPQ 286
Score = 37 (18.1 bits), Expect = 8.9e-13, Sum P(2) = 8.9e-13
Identities = 15/71 (21%), Positives = 29/71 (40%)
Query: 247 LLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM 306
LL +VC D KP+ R+ + + S + + HI++ + G C+ +
Sbjct: 314 LLNRVCQDGRKPH------TIRLIIRRYSSENHCSRESRQCPIPSHIIQKL-GTGNCDVI 366
Query: 307 LQKGSLLCAVF 317
+L +F
Sbjct: 367 TPMVDILMKLF 377
>UNIPROTKB|Q9UNA4 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005654 GO:GO:0046872 GO:GO:0003684
GO:GO:0006260 GO:GO:0006281 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AY094607 EMBL:AC093462
EMBL:AF140501 EMBL:AL136670 EMBL:BC032662 EMBL:AF245438
IPI:IPI00296840 RefSeq:NP_009126.2 UniGene:Hs.438533 PDB:1T3N
PDB:1ZET PDB:2ALZ PDB:2DPI PDB:2DPJ PDB:2FLL PDB:2FLN PDB:2FLP
PDB:2KHU PDB:2KHW PDB:2KTF PDB:2L0F PDB:2L0G PDB:3EPG PDB:3EPI
PDB:3G6V PDB:3G6X PDB:3G6Y PDB:3GV5 PDB:3GV7 PDB:3GV8 PDB:3H40
PDB:3H4B PDB:3H4D PDB:3NGD PDB:3OSN PDB:3Q8P PDB:3Q8Q PDB:3Q8R
PDB:3Q8S PDB:4EBC PDB:4EBD PDB:4EBE PDB:4EYH PDB:4EYI PDB:4FS1
PDB:4FS2 PDBsum:1T3N PDBsum:1ZET PDBsum:2ALZ PDBsum:2DPI
PDBsum:2DPJ PDBsum:2FLL PDBsum:2FLN PDBsum:2FLP PDBsum:2KHU
PDBsum:2KHW PDBsum:2KTF PDBsum:2L0F PDBsum:2L0G PDBsum:3EPG
PDBsum:3EPI PDBsum:3G6V PDBsum:3G6X PDBsum:3G6Y PDBsum:3GV5
PDBsum:3GV7 PDBsum:3GV8 PDBsum:3H40 PDBsum:3H4B PDBsum:3H4D
PDBsum:3NGD PDBsum:3OSN PDBsum:3Q8P PDBsum:3Q8Q PDBsum:3Q8R
PDBsum:3Q8S PDBsum:4EBC PDBsum:4EBD PDBsum:4EBE PDBsum:4EYH
PDBsum:4EYI PDBsum:4FS1 PDBsum:4FS2 ProteinModelPortal:Q9UNA4
SMR:Q9UNA4 IntAct:Q9UNA4 MINT:MINT-1189678 STRING:Q9UNA4
PhosphoSite:Q9UNA4 DMDM:59798440 PaxDb:Q9UNA4 PRIDE:Q9UNA4
DNASU:11201 Ensembl:ENST00000579534 GeneID:11201 KEGG:hsa:11201
UCSC:uc002lfj.4 CTD:11201 GeneCards:GC18P051731 H-InvDB:HIX0014457
HGNC:HGNC:9182 HPA:HPA012000 MIM:605252 neXtProt:NX_Q9UNA4
PharmGKB:PA33502 HOGENOM:HOG000234325 HOVERGEN:HBG053634
InParanoid:Q9UNA4 KO:K03510 OMA:VFYELPE OrthoDB:EOG46T310
ChEMBL:CHEMBL5391 ChiTaRS:POLI EvolutionaryTrace:Q9UNA4
GenomeRNAi:11201 NextBio:42637 Bgee:Q9UNA4 CleanEx:HS_POLI
Genevestigator:Q9UNA4 GermOnline:ENSG00000101751 Uniprot:Q9UNA4
Length = 740
Score = 210 (79.0 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 44/113 (38%), Positives = 66/113 (58%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARK 163
SR +HVD+D FYA VE +SNP LK KP+ V ++ T NYEAR+ GV+ M A++
Sbjct: 52 SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMNVRDAKE 111
Query: 164 LCPELIFVP-TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 215
CP+L+ V D T+Y S ++ ++ P DE ++D+TE+ +R
Sbjct: 112 KCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKR 164
Score = 152 (58.6 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 58/174 (33%), Positives = 87/174 (50%)
Query: 206 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 265
+++ +V R + G +IA E+R ++Y + GLT AGVA N+LLAK+ S + KPN Q VL
Sbjct: 188 INLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLL 247
Query: 266 NDRMAVMTFISSLP-IRKIGGIGKVTEHILRDVFGINTCEEMLQKGS--LLCAVFSHSTA 322
+ + I SL I++I GIG T L + GIN+ + LQ S +L S A
Sbjct: 248 PE--SCQHLIHSLNHIKEIPGIGYKTAKCL-EALGINSVRD-LQTFSPKILEKELGISVA 303
Query: 323 DFFLSVGLGLGSTNTPQARFR--KSISSERTFSVTEDKALLYRKLAEI-AEMLS 373
L G N+P +S S E +F + K+ E+ A +L+
Sbjct: 304 QRIQK--LSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNKIEELLASLLN 355
Score = 51 (23.0 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 26/97 (26%), Positives = 42/97 (43%)
Query: 488 DKETSVSLDVSETNNYEFGD---PVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLE 544
+KE +S+ FG+ PV + P E SF SEVE +N++ +LL
Sbjct: 295 EKELGISV-AQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEA--KNKIEELLA 351
Query: 545 GNSLVLRQ-EEGSCCDGVEEVDKDITPDNKVGTSSNQ 580
SL+ R ++G V + + + + G S Q
Sbjct: 352 --SLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQ 386
>UNIPROTKB|P63985 [details] [associations]
symbol:dinB1 "DNA polymerase IV 1" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] HAMAP:MF_01113
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
InterPro:IPR022880 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005829 GO:GO:0005886 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 EMBL:BX842577 GO:GO:0003887 PIR:F70760
RefSeq:NP_216053.2 RefSeq:NP_336041.2 RefSeq:YP_006514925.1
ProteinModelPortal:P63985 SMR:P63985
EnsemblBacteria:EBMYCT00000000713 EnsemblBacteria:EBMYCT00000071148
GeneID:13320135 GeneID:886414 GeneID:924358 KEGG:mtc:MT1589
KEGG:mtu:Rv1537 KEGG:mtv:RVBD_1537 PATRIC:18125261
TubercuList:Rv1537 eggNOG:COG0389 HOGENOM:HOG000082707 KO:K02346
OMA:LKKADMS ProtClustDB:PRK03348 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 Uniprot:P63985
Length = 468
Score = 302 (111.4 bits), Expect = 3.2e-24, P = 3.2e-24
Identities = 102/365 (27%), Positives = 169/365 (46%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFI 160
SR LH+DMDAF+A+VE L+ P+L+G+P+ VG + ++ A+YEAR +G R+AMP
Sbjct: 3 SRWVLHLDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARAYGARSAMPMHQ 62
Query: 161 ARKLCP-ELIFVPTDFTKYTYYSDLTRKVFCKYD---PNFMAASLDEAYLDITEVCRERG 216
AR+L + +P + Y +R+VF P S DEA+ + ++
Sbjct: 63 ARRLIGVTAVVLPP---RGVVYGIASRRVFDTVRGLVPVVEQLSFDEAFAEPPQLAGAVA 119
Query: 217 ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 276
E LR V +E GL S G + +AK+ S + KP+G V+ + + +S
Sbjct: 120 EDVETFCERLRRRVRDETGLIASVGAGSGKQIAKIASGLAKPDGIRVVRHAEEQAL--LS 177
Query: 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLS-VGLGLGST 335
LP+R++ GIG V E L + GI T ++ A +T L + G+
Sbjct: 178 GLPVRRLWGIGPVAEEKLHRL-GIETIGQLAALSDAEAANILGATIGPALHRLARGIDDR 236
Query: 336 NTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEXXXXXXXXXXXXXAS 394
+ K IS+E TF+V L+ + IAE + ++ +
Sbjct: 237 PVVERAEAKQISAESTFAVDLTTMEQLHEAIDSIAEHAHQRLLRDGRGARTITVKLKKSD 296
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLR---VTQFNEDKVRAPSD 450
TR+ T+ + + + A LL L + +RL+G+ ++ ++ + A SD
Sbjct: 297 MSTLTRSATMPYPTTDAGALFTVARRLLPDPLQIGPIRLLGVGFSGLSDIRQESLFADSD 356
Query: 451 PTQKT 455
TQ+T
Sbjct: 357 LTQET 361
>MGI|MGI:1347081 [details] [associations]
symbol:Poli "polymerase (DNA directed), iota" species:10090
"Mus musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IDA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 MGI:MGI:1347081 GO:GO:0005634 GO:GO:0046872
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 GO:GO:0003887
eggNOG:COG0389 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 CTD:11201
HOGENOM:HOG000234325 HOVERGEN:HBG053634 KO:K03510 OrthoDB:EOG46T310
EMBL:AF151691 EMBL:AY515316 EMBL:AY515317 EMBL:BC082278
IPI:IPI00553425 IPI:IPI00985545 RefSeq:NP_001129562.1
UniGene:Mm.244352 PDB:2KWU PDB:2KWV PDB:3AI4 PDBsum:2KWU
PDBsum:2KWV PDBsum:3AI4 ProteinModelPortal:Q6R3M4 SMR:Q6R3M4
IntAct:Q6R3M4 STRING:Q6R3M4 PhosphoSite:Q6R3M4 PRIDE:Q6R3M4
Ensembl:ENSMUST00000043286 Ensembl:ENSMUST00000161542 GeneID:26447
KEGG:mmu:26447 UCSC:uc008foi.2 UCSC:uc008fok.2 InParanoid:Q6R3M4
BindingDB:Q6R3M4 ChEMBL:CHEMBL5159 NextBio:304545 Bgee:Q6R3M4
CleanEx:MM_POLI Genevestigator:Q6R3M4 GermOnline:ENSMUSG00000038425
Uniprot:Q6R3M4
Length = 717
Score = 207 (77.9 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
Identities = 43/113 (38%), Positives = 66/113 (58%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARK 163
SR +HVD+D FYA VE +SNP LK +P+ V ++ T NYEAR+ GVR M A++
Sbjct: 27 SRVIVHVDLDCFYAQVEMISNPELKDRPLGVQQKYLVVTCNYEARKLGVRKLMNVRDAKE 86
Query: 164 LCPELIFVP-TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 215
CP+L+ V D ++Y S ++ ++ P DE ++D+TE+ +R
Sbjct: 87 KCPQLVLVNGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKR 139
Score = 157 (60.3 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
Identities = 41/102 (40%), Positives = 62/102 (60%)
Query: 206 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 265
+++ + R + G +IA E+R ++Y + GLT AGVAPN+LLAK+ S + KPN Q VL
Sbjct: 163 VNLHNIMHRRLVVGSQIAAEMREAMYNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLL 222
Query: 266 NDRMAVMTFISSLP-IRKIGGIGKVTEHILRDVFGINTCEEM 306
+ + I SL I++I GIG T L +V GIN+ ++
Sbjct: 223 PE--SCQHLIHSLNHIKEIPGIGYKTAKRL-EVLGINSVHDL 261
Score = 41 (19.5 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 611 SDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKE 660
S FH LQ E+ S R + ++ + SH+ + ++L E
Sbjct: 627 SGFHSFPNLQTEQLFSTHRTVDSHKQTATASHQGLESHQGLESRELDSAE 676
Score = 38 (18.4 bits), Expect = 5.4e-12, Sum P(3) = 5.4e-12
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 247 LLAKVCSDINKPN 259
LL +VC D KP+
Sbjct: 328 LLTRVCQDGRKPH 340
>ASPGD|ASPL0000012133 [details] [associations]
symbol:AN3909 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005819 "spindle" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017956 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573
PROSITE:PS50173 SMART:SM00384 InterPro:IPR001357 GO:GO:0000287
GO:GO:0003684 GO:GO:0006281 EMBL:BN001302 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:AACD01000064 GO:GO:0003887
eggNOG:COG0389 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 InterPro:IPR025527 Pfam:PF14377 KO:K03515
OrthoDB:EOG49PF6V RefSeq:XP_661513.1 ProteinModelPortal:Q5B6C1
STRING:Q5B6C1 EnsemblFungi:CADANIAT00004788 GeneID:2873330
KEGG:ani:AN3909.2 HOGENOM:HOG000216225 OMA:SAEVNWG Uniprot:Q5B6C1
Length = 1139
Score = 315 (115.9 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 99/317 (31%), Positives = 149/317 (47%)
Query: 60 KEAFIQQKIEHMRARCAKLTSPVISHYQ-KVADKRILELEATRDLSRSWLHVDMDAFYAA 118
++ + + ++ H+ A+L + + S Q K +R +L R +HVD D F+AA
Sbjct: 296 QQYYKESRLHHLSTWKAELKAQLQSKAQEKARSQRRKKL--VPGARRYIMHVDFDCFFAA 353
Query: 119 VETLSNPSLKGKPMAV----GTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTD 174
V TL +P L+GKP+A+ GT S I + NY AR GV+ M A + CP+L +P D
Sbjct: 354 VSTLKHPELEGKPVAIAHGTGTGSEIASCNYVARASGVKNGMWMKGALQACPDLRVLPYD 413
Query: 175 FTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS---GI----------- 220
F Y S + D + S+DEA +DIT +C E G S G+
Sbjct: 414 FPAYEEASRKFYRAILGIDGLVQSVSIDEALVDITTICLEAGGSEGKGVSEGSIYREQAK 473
Query: 221 --EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
E+AE+LR ++ E G S G+ N L AKV KP GQF L D AV+ FI L
Sbjct: 474 ADEVAEQLRAAIKRETGCAVSVGIGGNILQAKVALRKAKPAGQFQLKPD--AVLDFIGEL 531
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNT 337
P++ + G+G L D+ G+ +++ L + T G+ T
Sbjct: 532 PVQNLPGVGYSLSAKLEDL-GVKIVKDIRDLSREKLSSSLGPKTGAKLADYARGIDRTEV 590
Query: 338 PQARFRKSISSERTFSV 354
RKS+S+E + +
Sbjct: 591 GNEVTRKSVSAEVNWGI 607
Score = 40 (19.1 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 532 EKIHENEVSQLLEGNSLVLR 551
E++H V L++G L L+
Sbjct: 624 EELHRRLVENLMKGQQLTLK 643
>RGD|1305212 [details] [associations]
symbol:Poli "polymerase (DNA directed), iota" species:10116
"Rattus norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005622 "intracellular" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008152 "metabolic process" evidence=ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
RGD:1305212 GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 EMBL:CH473971
GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 CTD:11201 KO:K03510
OrthoDB:EOG46T310 IPI:IPI00870858 RefSeq:NP_001099607.1
UniGene:Rn.136855 Ensembl:ENSRNOT00000016189 GeneID:291526
KEGG:rno:291526 NextBio:632673 Uniprot:D4A8I8
Length = 732
Score = 207 (77.9 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 43/113 (38%), Positives = 66/113 (58%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARK 163
SR +HVD+D FYA VE +SNP LK KP+ V ++ T NYEAR+ GV+ M A++
Sbjct: 47 SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMNVRDAKE 106
Query: 164 LCPELIFVP-TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 215
CP+L+ V D ++Y S ++ ++ P DE ++D+TE+ +R
Sbjct: 107 KCPQLVLVNGEDLSRYREMSYKVTELLEEFSPAVERLGFDENFVDLTEMVEKR 159
Score = 146 (56.5 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 52/157 (33%), Positives = 77/157 (49%)
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
G +IA E+R +++ + GLT AGVAPN+LLAK+ S + KPN Q VL + + I SL
Sbjct: 196 GSQIAAEMREAMHNQLGLTGCAGVAPNKLLAKLVSGVFKPNQQTVLLPE--SCQHLIHSL 253
Query: 279 P-IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGST 335
I+++ GIG T L +V GIN+ + LQ + L S A + G +
Sbjct: 254 NHIKEMPGIGYKTAKRL-EVLGINSVHD-LQTFPIKTLEKELGISVAQRIRKLSFGEDKS 311
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 372
+ +S S E TF + K+ E+ L
Sbjct: 312 PVTPSGPPQSFSEEDTFKKCSSEVEAKTKIEELLSSL 348
>UNIPROTKB|E2RC81 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0006301 "postreplication repair" evidence=IEA] [GO:0006290
"pyrimidine dimer repair" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0005634 GO:GO:0005737 GO:GO:0003684
GO:GO:0010225 GO:GO:0000731 GO:GO:0006301 GO:GO:0003887
GO:GO:0006290 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
CTD:5429 OMA:SPPLTML InterPro:IPR017061 PIRSF:PIRSF036603
GeneTree:ENSGT00530000062942 EMBL:AAEX03008345 RefSeq:XP_532150.2
Ensembl:ENSCAFT00000003028 GeneID:474915 KEGG:cfa:474915
NextBio:20850851 Uniprot:E2RC81
Length = 712
Score = 167 (63.8 bits), Expect = 3.7e-23, Sum P(3) = 3.7e-23
Identities = 50/141 (35%), Positives = 69/141 (48%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAVGTMSM-----ICTANYEARRFGVRAAMPGFIARKL 164
VDMD F+ VE NP L+ KP AV I +YEAR FGV +M A+KL
Sbjct: 12 VDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIVAVSYEARAFGVTRSMWADDAKKL 71
Query: 165 CPELIFVPT-------DFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER-- 215
CP+L+ + TKY S + ++ AS+DEAY+D+T +ER
Sbjct: 72 CPDLLLAQVRESRGKANLTKYREASVEVMGILSRFAV-IERASIDEAYIDLTSAVQERLQ 130
Query: 216 GISGIEIAEELRTSVYEEAGL 236
+ G I+ +L + Y E GL
Sbjct: 131 NLQGQPISADLLPTTYIE-GL 150
Score = 151 (58.2 bits), Expect = 3.7e-23, Sum P(3) = 3.7e-23
Identities = 71/298 (23%), Positives = 131/298 (43%)
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
G I EE+R ++ E G CSAG++ N++LAK+ +NKPN Q ++ + +V S +
Sbjct: 193 GAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG--SVPQLFSQM 250
Query: 279 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTN 336
PI KI +G K+ ++ ++ G+ E+ Q S L + F + ++ G+
Sbjct: 251 PISKIRSLGGKLGASVI-EILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDP 309
Query: 337 TPQARFRKSISSERTFS-----VTEDKALLYR-KLA-EIAEMLSADMQKEXXXXXXXXXX 389
+ K+I + F T ++ + +LA E+ E L+ D + +
Sbjct: 310 VKPRQLPKTIGCSKNFPGKTALTTREQVQWWLLQLAQELEERLTKD-RNDNDRVATQLAV 368
Query: 390 XXXASFEVRT----RAVTLQKYISS--SED---ILKHASVL-LKAELPVSLRLIGLRVTQ 439
+ R R L +Y + S D ++K+ + +K + L ++ L T+
Sbjct: 369 SIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFAVIKNCNTSGIKTDWSPPLTMLFLCATK 428
Query: 440 FNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLID-DKETSVSLD 496
F+ APS T +T F++S +S V +S D + K+ + SL+
Sbjct: 429 FSAP---APSSCTD--ITTFLSSDPSSVTNVPVSSSEAKTQGCDLAVTATKKATTSLE 481
Score = 80 (33.2 bits), Expect = 3.7e-23, Sum P(3) = 3.7e-23
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 588 DDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQK---EESGSDLRILTHRERCVRTQRDH 644
D C CG+ +P + E EH+D+H A LQK + S ++++ + R +
Sbjct: 631 DQVPCEKCGSLVP---VWEMPEHTDYHFALELQKSFLQPHSSTMQVVPASSQSKRNPKSP 687
Query: 645 IASHRKRKK 653
AS+ KR +
Sbjct: 688 SASNSKRTR 696
>FB|FBgn0035150 [details] [associations]
symbol:Rev1 "Rev1" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0017125 "deoxycytidyl
transferase activity" evidence=ISS;NAS] [GO:0019985 "translesion
synthesis" evidence=NAS] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=IMP] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 EMBL:AE014296 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0010569 GO:GO:0003887 GO:GO:0019985 Gene3D:3.30.1490.100
SUPFAM:SSF100879 GO:GO:0017125 GeneTree:ENSGT00530000062942
KO:K03515 OMA:TIPYDFD CTD:51455 FlyBase:FBgn0035150 EMBL:AB049435
RefSeq:NP_612047.1 UniGene:Dm.2203 SMR:Q9W0P2 IntAct:Q9W0P2
STRING:Q9W0P2 EnsemblMetazoa:FBtr0072557 GeneID:38079
KEGG:dme:Dmel_CG12189 UCSC:CG12189-RA InParanoid:Q9W0P2
GenomeRNAi:38079 NextBio:806885 Uniprot:Q9W0P2
Length = 995
Score = 275 (101.9 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 66/221 (29%), Positives = 110/221 (49%)
Query: 136 TMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPN 195
++S I + +YEAR G+R M A KLCPEL +P DF Y + +Y N
Sbjct: 355 SLSEIASCSYEAREKGIRNGMFVGQALKLCPELKTIPYDFEGYKEVAFTLYDTVAQYTLN 414
Query: 196 FMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
A S DE ++++T++ E + + LR VY + G CSAGVA N+LLA++ +
Sbjct: 415 IEAVSCDEMFVELTDLAHELNVDVMAFVSHLRQEVYSKTGCPCSAGVAGNKLLARMATKE 474
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--L 313
KPNGQF+L + ++ +++ + + + G+G H L+ G+N C ++ Q +L +
Sbjct: 475 AKPNGQFLLDSSN-DILAYMAPMSLDLLPGVGSSISHKLKQA-GLNNCGDV-QNTTLEKM 531
Query: 314 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV 354
V G+ + RK++S+E F +
Sbjct: 532 EKVLGKKLGQNLFQNCRGIDDRPLAYEQIRKTVSAEMNFGI 572
Score = 77 (32.2 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV 134
L R +H+DMD F+ +V + P L+G P+AV
Sbjct: 271 LERYVMHIDMDCFFVSVGLRTRPELRGLPIAV 302
>ZFIN|ZDB-GENE-081105-180 [details] [associations]
symbol:si:dkey-57a22.7 "si:dkey-57a22.7"
species:7955 "Danio rerio" [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 ZFIN:ZDB-GENE-081105-180
GO:GO:0000287 GO:GO:0003684 GO:GO:0006281 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 InterPro:IPR024728 Pfam:PF11798
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 KO:K03515
HOGENOM:HOG000154094 HOVERGEN:HBG054140 EMBL:CR392332 EMBL:CR536604
IPI:IPI00862463 RefSeq:NP_001116772.1 UniGene:Dr.61598 SMR:B0UY97
Ensembl:ENSDART00000134915 GeneID:570043 KEGG:dre:570043
NextBio:20889959 Uniprot:B0UY97
Length = 1268
Score = 275 (101.9 bits), Expect = 6.1e-23, Sum P(2) = 6.1e-23
Identities = 71/224 (31%), Positives = 114/224 (50%)
Query: 132 MAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCK 191
+A +M+ I + +YEAR+ GVR M A++LCP+L VP DF Y + ++
Sbjct: 539 LAALSMAEIASCSYEARQAGVRNGMFFGRAKQLCPDLQSVPYDFHAYKEVALAMYEILAS 598
Query: 192 YDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKV 251
Y N A S DEA +D T + E G+S E+A +R + E+ G S G++ N LLA++
Sbjct: 599 YTHNIEALSCDEALVDATALLVELGVSPDELARSIREDIKEKTGCCASVGMSSNILLARM 658
Query: 252 CSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG- 310
+ KP GQ++L ++ V FI P+ + G+G+ L + G++TC ++ Q
Sbjct: 659 ATRKAKPKGQYLLRSEE--VDDFIRDQPVSSLPGVGRSMSSKLTSL-GVSTCGDLQQLSL 715
Query: 311 SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV 354
S L F T GL + RKS+S+E +++
Sbjct: 716 SQLQREFGPRTGQTLFRFCRGLDDRPVRSEKERKSVSAEMNYNI 759
Score = 78 (32.5 bits), Expect = 6.1e-23, Sum P(2) = 6.1e-23
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 65 QQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSW-LHVDMDAFYAAVETLS 123
++K++ ++A C +SH+ + L A + +S LHVDMD F+ +V
Sbjct: 420 REKLKKLKANCNS-----VSHFDPGS------LMAAPQVRQSCVLHVDMDCFFVSVGIRH 468
Query: 124 NPSLKGKPMAV 134
P L GKP+AV
Sbjct: 469 RPDLIGKPVAV 479
>UNIPROTKB|Q9Y253 [details] [associations]
symbol:POLH "DNA polymerase eta" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006290 "pyrimidine dimer repair"
evidence=IEA] [GO:0006301 "postreplication repair" evidence=IEA]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IDA]
[GO:0010225 "response to UV-C" evidence=IDA] [GO:0006282
"regulation of DNA repair" evidence=TAS] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_216
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005737
GO:GO:0005654 GO:GO:0046872 GO:GO:0003684 GO:GO:0006260
GO:GO:0010225 GO:GO:0000731 GO:GO:0006301 GO:GO:0006282
GO:GO:0003887 GO:GO:0006290 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 CleanEx:HS_POLH KO:K03509 EMBL:AL353602
EMBL:AB024313 EMBL:AF158185 EMBL:AB038008 EMBL:AY388614
EMBL:AL355802 EMBL:BC015742 IPI:IPI00008011 IPI:IPI00552037
RefSeq:NP_006493.1 UniGene:Hs.655467 PDB:2I5O PDB:2LSK PDB:3MR2
PDB:3MR3 PDB:3MR5 PDB:3MR6 PDB:3SI8 PDB:3TQ1 PDB:4DL2 PDB:4DL3
PDB:4DL4 PDB:4DL5 PDB:4DL6 PDB:4DL7 PDB:4ECQ PDB:4ECR PDB:4ECS
PDB:4ECT PDB:4ECU PDB:4ECV PDB:4ECW PDB:4ECX PDB:4ECY PDB:4ECZ
PDB:4ED0 PDB:4ED1 PDB:4ED2 PDB:4ED3 PDB:4ED6 PDB:4ED7 PDB:4ED8
PDB:4EEY PDBsum:2I5O PDBsum:2LSK PDBsum:3MR2 PDBsum:3MR3
PDBsum:3MR5 PDBsum:3MR6 PDBsum:3SI8 PDBsum:3TQ1 PDBsum:4DL2
PDBsum:4DL3 PDBsum:4DL4 PDBsum:4DL5 PDBsum:4DL6 PDBsum:4DL7
PDBsum:4ECQ PDBsum:4ECR PDBsum:4ECS PDBsum:4ECT PDBsum:4ECU
PDBsum:4ECV PDBsum:4ECW PDBsum:4ECX PDBsum:4ECY PDBsum:4ECZ
PDBsum:4ED0 PDBsum:4ED1 PDBsum:4ED2 PDBsum:4ED3 PDBsum:4ED6
PDBsum:4ED7 PDBsum:4ED8 PDBsum:4EEY ProteinModelPortal:Q9Y253
SMR:Q9Y253 IntAct:Q9Y253 MINT:MINT-2789553 STRING:Q9Y253
PhosphoSite:Q9Y253 DMDM:59798441 PRIDE:Q9Y253
Ensembl:ENST00000372226 Ensembl:ENST00000372236 GeneID:5429
KEGG:hsa:5429 UCSC:uc003ovq.4 CTD:5429 GeneCards:GC06P043543
HGNC:HGNC:9181 HPA:HPA006721 HPA:HPA026762 MIM:278750 MIM:603968
neXtProt:NX_Q9Y253 Orphanet:90342 PharmGKB:PA279
HOGENOM:HOG000115605 HOVERGEN:HBG053633 InParanoid:Q9Y253
OMA:SPPLTML OrthoDB:EOG4RBQJ8 PhylomeDB:Q9Y253 SABIO-RK:Q9Y253
BindingDB:Q9Y253 ChEMBL:CHEMBL5542 EvolutionaryTrace:Q9Y253
GenomeRNAi:5429 NextBio:21005 ArrayExpress:Q9Y253 Bgee:Q9Y253
Genevestigator:Q9Y253 GermOnline:ENSG00000170734 InterPro:IPR017061
PIRSF:PIRSF036603 Uniprot:Q9Y253
Length = 713
Score = 170 (64.9 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 51/141 (36%), Positives = 70/141 (49%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAVGTMSM-----ICTANYEARRFGVRAAMPGFIARKL 164
VDMD F+ VE NP L+ KP AV I +YEAR FGV +M A+KL
Sbjct: 12 VDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWADDAKKL 71
Query: 165 CPELIFVPT-------DFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER-- 215
CP+L+ + TKY S ++ ++ AS+DEAY+D+T +ER
Sbjct: 72 CPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAV-IERASIDEAYVDLTSAVQERLQ 130
Query: 216 GISGIEIAEELRTSVYEEAGL 236
+ G I+ +L S Y E GL
Sbjct: 131 KLQGQPISADLLPSTYIE-GL 150
Score = 159 (61.0 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 67/267 (25%), Positives = 122/267 (45%)
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
G I EE+R ++ E G CSAG++ N++LAK+ +NKPN Q ++ + +V S +
Sbjct: 193 GAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG--SVPQLFSQM 250
Query: 279 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTN 336
PIRKI +G K+ ++ ++ GI E+ Q S L + F + ++ G+
Sbjct: 251 PIRKIRSLGGKLGASVI-EILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDP 309
Query: 337 TPQARFRKSISSERTFS-----VTEDKALLYR-KLA-EIAEMLSADMQKEXXXXXXXXXX 389
+ K+I + F T ++ + +LA E+ E L+ D + +
Sbjct: 310 VKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKD-RNDNDRVATQLVV 368
Query: 390 XXXASFEVRT----RAVTLQKYISS--SED---ILKHASVL-LKAELPVSLRLIGLRVTQ 439
+ R R L +Y + S D ++K+ + ++ E L ++ L T+
Sbjct: 369 SIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEWSPPLTMLFLCATK 428
Query: 440 FNEDKVRAPSDPTQKTLTNFMTSGHAS 466
F+ APS T +T+F++S +S
Sbjct: 429 FSAS---APSSSTD--ITSFLSSDPSS 450
Score = 64 (27.6 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 27/100 (27%), Positives = 41/100 (41%)
Query: 522 CSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQK 581
C +K+ E K E+ L NS + S V EV + TP+ + + +Q
Sbjct: 578 CEGVSKLEESSKATPAEMD--LAHNSQSMHASSAS--KSVLEVTQKATPNPSLLAAEDQ- 632
Query: 582 DQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQK 621
C CG+ +P + + EH D+H A LQK
Sbjct: 633 --------VPCEKCGSLVP---VWDMPEHMDYHFALELQK 661
>ZFIN|ZDB-GENE-050417-376 [details] [associations]
symbol:poli "polymerase (DNA directed) iota"
species:7955 "Danio rerio" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 ZFIN:ZDB-GENE-050417-376
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 CTD:11201 HOVERGEN:HBG053634 KO:K03510
EMBL:BC092781 IPI:IPI00481247 RefSeq:NP_001017834.1
UniGene:Dr.78857 ProteinModelPortal:Q568P0 SMR:Q568P0 GeneID:550532
KEGG:dre:550532 InParanoid:Q568P0 NextBio:20879773 Uniprot:Q568P0
Length = 710
Score = 186 (70.5 bits), Expect = 9.2e-22, Sum P(2) = 9.2e-22
Identities = 47/137 (34%), Positives = 71/137 (51%)
Query: 86 YQKVADKRILELE--ATRDLS----RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
+++ + ILE E +T +S R LH D+D FYA VE + NP+L+ KP+ + +
Sbjct: 12 WERSLESDILETEGSSTDRVSLTSQRVILHFDLDCFYAQVEMIRNPALRTKPLGIQQKYI 71
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVP-TDFTKYTYYSDLTRKVFCKYDPNFMA 198
I T+NY AR GV M A + CP+L+ V D T Y S ++ Y P
Sbjct: 72 IVTSNYVARELGVNKLMSVTDAVEKCPQLVLVKGEDLTHYREMSYKVTELLMSYCPLVER 131
Query: 199 ASLDEAYLDITEVCRER 215
DE ++D+TE+ +R
Sbjct: 132 LGFDENFMDVTEMVEKR 148
Score = 153 (58.9 bits), Expect = 9.2e-22, Sum P(2) = 9.2e-22
Identities = 49/162 (30%), Positives = 79/162 (48%)
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTFISS 277
G IA E+R +++ GLT AGVA N+LLAK+ S KPN Q +LP+ +M+ ++
Sbjct: 181 GSVIAAEMRQAIFSTLGLTGCAGVASNKLLAKLVSGSFKPNQQTTLLPHSNAELMSSLTG 240
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
L K+ GIG T L+ + +N + L S L F A ++ G+ +
Sbjct: 241 LI--KVPGIGYKTREKLKALGLVNVRDLQLYPLSDLVKEFGEMNAKRVQNLACGIDDSPV 298
Query: 338 PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 379
A +S+S E +F + +K+ E+ L+ M K+
Sbjct: 299 TPAGPPQSLSDEDSFKKMSTLEEVLKKIEELLINLTERMHKD 340
>UNIPROTKB|Q4KWZ7 [details] [associations]
symbol:REV1 "DNA repair protein REV1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0019985
"translesion synthesis" evidence=TAS] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0002206 "gene conversion of
immunoglobulin genes" evidence=IMP] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005654 GO:GO:0000287
GO:GO:0003684 GO:GO:0006260 GO:GO:0006302 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 Reactome:REACT_115612 GO:GO:0003887
GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
KO:K03515 EMBL:AY675169 IPI:IPI00571721 RefSeq:NP_001025982.2
UniGene:Gga.24037 ProteinModelPortal:Q4KWZ7 SMR:Q4KWZ7
STRING:Q4KWZ7 GeneID:418703 KEGG:gga:418703 CTD:51455
HOGENOM:HOG000154094 HOVERGEN:HBG054140 InParanoid:Q4KWZ7
OrthoDB:EOG4GF3DF NextBio:20821851 GO:GO:0002206 Uniprot:Q4KWZ7
Length = 1255
Score = 255 (94.8 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 78/250 (31%), Positives = 118/250 (47%)
Query: 132 MAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCK 191
+ V +M+ I + +YEAR+ G++ M A+KLCP L V DF Y + ++
Sbjct: 511 LTVLSMAEIASCSYEARQAGIKNGMFFGQAKKLCPNLQAVSYDFNAYKEVAQTVYEILAS 570
Query: 192 YDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKV 251
Y N A S DEA +DITE+ E ++ E+A +R + + T S G+ N LLA++
Sbjct: 571 YTHNIEAVSCDEALVDITEILTETRLTPDELANAIRDEIKAQTKCTASVGMGSNILLARM 630
Query: 252 CSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS 311
+ KP+GQ+ L + V FI + + G+G+ E L + GI TC + LQ S
Sbjct: 631 ATRKAKPDGQYHLKPEE--VDDFIRGQLVTNLPGVGRSMESKLASL-GIRTCGD-LQCAS 686
Query: 312 L--LCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV--TEDK---ALLYRK 364
+ L F T GL + RKS+S+E + + T+ K A L
Sbjct: 687 MSKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSL 746
Query: 365 LAEIAEMLSA 374
EI L A
Sbjct: 747 SEEIQRRLEA 756
Score = 85 (35.0 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAV 134
+HVDMD F+ +V + P LKGKP+AV
Sbjct: 424 MHVDMDCFFVSVAIRNRPDLKGKPVAV 450
Score = 42 (19.8 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 14 NPR-PWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMS 48
NP+ WQ Y N KA + DK + +V+E S
Sbjct: 466 NPQLEWQYYQNKLLNGKAEIRIPDK--LDSLVWEHS 499
>UNIPROTKB|F1P5H4 [details] [associations]
symbol:REV1 "DNA repair protein REV1" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0009411
"response to UV" evidence=IEA] [GO:0017125 "deoxycytidyl
transferase activity" evidence=IEA] [GO:0042276 "error-prone
translesion synthesis" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003887 GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GO:GO:0017125 GeneTree:ENSGT00530000062942 OMA:YRFCRGL
EMBL:AADN02017696 EMBL:AADN02017697 IPI:IPI01017381
Ensembl:ENSGALT00000027069 Uniprot:F1P5H4
Length = 1255
Score = 255 (94.8 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 78/250 (31%), Positives = 118/250 (47%)
Query: 132 MAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCK 191
+ V +M+ I + +YEAR+ G++ M A+KLCP L V DF Y + ++
Sbjct: 511 LTVLSMAEIASCSYEARQAGIKNGMFFGQAKKLCPNLQAVSYDFNAYKEVAQTVYEILAS 570
Query: 192 YDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKV 251
Y N A S DEA +DITE+ E ++ E+A +R + + T S G+ N LLA++
Sbjct: 571 YTHNIEAVSCDEALVDITEILTETRLTPDELANAIRDEIKAQTKCTASVGMGSNILLARM 630
Query: 252 CSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS 311
+ KP+GQ+ L + V FI + + G+G+ E L + GI TC + LQ S
Sbjct: 631 ATRKAKPDGQYHLKPEE--VDDFIRGQLVTNLPGVGRSMESKLASL-GIRTCGD-LQCAS 686
Query: 312 L--LCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV--TEDK---ALLYRK 364
+ L F T GL + RKS+S+E + + T+ K A L
Sbjct: 687 MSKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSL 746
Query: 365 LAEIAEMLSA 374
EI L A
Sbjct: 747 SEEIQRRLEA 756
Score = 85 (35.0 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAV 134
+HVDMD F+ +V + P LKGKP+AV
Sbjct: 424 MHVDMDCFFVSVAIRNRPDLKGKPVAV 450
Score = 39 (18.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 14 NPR-PWQSYHTVYTNAKAGMDGVDK 37
NP+ WQ Y N KA + DK
Sbjct: 466 NPQLEWQYYQNKLLNGKAEIRVPDK 490
>TAIR|locus:2156319 [details] [associations]
symbol:REV1 species:3702 "Arabidopsis thaliana"
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA;IDA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA
repair" evidence=IEA;ISS] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0010224 "response to UV-B"
evidence=IMP] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0010090
"trichome morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0045010
"actin nucleation" evidence=RCA] [GO:0050665 "hydrogen peroxide
biosynthetic process" evidence=RCA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000287 GO:GO:0003684 GO:GO:0006260
GO:GO:0006281 GO:GO:0006974 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0010224 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AB016874 EMBL:AC002342
EMBL:AB187523 EMBL:EF016093 EMBL:EF016094 EMBL:EF016095
EMBL:EF016096 EMBL:EF016097 EMBL:EF016098 EMBL:AY080825
IPI:IPI00517369 IPI:IPI00554422 IPI:IPI00837466 IPI:IPI00891315
RefSeq:NP_001119373.1 RefSeq:NP_199288.4 UniGene:At.30056
ProteinModelPortal:A3EWL3 SMR:A3EWL3 STRING:A3EWL3 PRIDE:A3EWL3
EnsemblPlants:AT5G44750.2 GeneID:834504 KEGG:ath:AT5G44750
TAIR:At5g44750 HOGENOM:HOG000246421 KO:K03515 OMA:TIPYDFD
PhylomeDB:A3EWL3 ProtClustDB:CLSN2681660 Genevestigator:A3EWL3
Uniprot:A3EWL3
Length = 1105
Score = 284 (105.0 bits), Expect = 3.6e-21, P = 3.6e-21
Identities = 106/411 (25%), Positives = 189/411 (45%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEARRFGVRAAMPGFI 160
+H+D+D F+ +V + L KP+AV GT I +ANY AR +GV+A M
Sbjct: 376 IHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAE-ISSANYPARAYGVKAGMFVRH 434
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A+ LCP+L+ VP +F Y +D + ++ A S DEA+LD++++ +
Sbjct: 435 AKDLCPQLVIVPYNFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSDLS---DVETE 491
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+A +R + E G + SAG+ L+A++ + + KP GQ + ++ V F+ LP+
Sbjct: 492 VLASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEK--VEEFLDQLPV 549
Query: 281 RKIGGIGKVT-EHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
+ G+G V E +++ I TC ++ + K SL F T + S GL +
Sbjct: 550 GTLPGVGSVLKEKLVKQ--NIQTCGQLRLISKDSLQ-KDFGVKTGEMLWSYSRGLDLRSV 606
Query: 338 PQARFRKSISSERTFSVT----EDKALLYRKLA-----EIA------EML----SADMQK 378
+ KSI +E + V +D +L + E++ EM+ + ++K
Sbjct: 607 TAVQESKSIGAEVNWGVRFRDQQDVFILVQHFLQCLCKEVSLRLQGCEMIGRTFTLKIKK 666
Query: 379 EXXXXXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKAE--LPVS-LRLIGL 435
+ +R++T+ E +L+ S L L V +R +GL
Sbjct: 667 RKKDAEEPTKYMGCGDCDNLSRSITVPAATDDIE-VLQRISKKLFGSFCLDVKEVRGVGL 725
Query: 436 RVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDI--NDDC 484
+V++ + PS+ +TL ++++S A +I D N + + N DC
Sbjct: 726 QVSKLDSAD---PSNKGSRTLKSWLSSAPAVVQIEQDDNVFAAKVRENSDC 773
>UNIPROTKB|J3KTN3 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI Ensembl:ENST00000583136 Uniprot:J3KTN3
Length = 222
Score = 155 (59.6 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 33/95 (34%), Positives = 53/95 (55%)
Query: 122 LSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVP-TDFTKYTY 180
+SNP LK KP+ V ++ T NYEAR+ GV+ M A++ CP+L+ V D T+Y
Sbjct: 2 ISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMNVRDAKEKCPQLVLVNGEDLTRYRE 61
Query: 181 YSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 215
S ++ ++ P DE ++D+TE+ +R
Sbjct: 62 MSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKR 96
Score = 148 (57.2 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 40/102 (39%), Positives = 61/102 (59%)
Query: 206 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 265
+++ +V R + G +IA E+R ++Y + GLT AGVA N+LLAK+ S + KPN Q VL
Sbjct: 120 INLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLL 179
Query: 266 NDRMAVMTFISSLP-IRKIGGIGKVTEHILRDVFGINTCEEM 306
+ + I SL I++I GIG T L + GIN+ ++
Sbjct: 180 PE--SCQHLIHSLNHIKEIPGIGYKTAKCL-EALGINSVRDL 218
>MGI|MGI:1891457 [details] [associations]
symbol:Polh "polymerase (DNA directed), eta (RAD 30
related)" species:10090 "Mus musculus" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006290
"pyrimidine dimer repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0010225 "response to UV-C"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 MGI:MGI:1891457 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
CTD:5429 HOGENOM:HOG000115605 HOVERGEN:HBG053633 OMA:SPPLTML
OrthoDB:EOG4RBQJ8 InterPro:IPR017061 PIRSF:PIRSF036603
EMBL:AB027128 EMBL:AB037184 EMBL:AK036296 IPI:IPI00122040
RefSeq:NP_109640.1 UniGene:Mm.311585 ProteinModelPortal:Q9JJN0
SMR:Q9JJN0 IntAct:Q9JJN0 STRING:Q9JJN0 PhosphoSite:Q9JJN0
PRIDE:Q9JJN0 Ensembl:ENSMUST00000024749 GeneID:80905 KEGG:mmu:80905
UCSC:uc008crx.1 GeneTree:ENSGT00530000062942 InParanoid:Q9JJN0
NextBio:350254 Bgee:Q9JJN0 CleanEx:MM_POLH Genevestigator:Q9JJN0
GermOnline:ENSMUSG00000023953 Uniprot:Q9JJN0
Length = 694
Score = 168 (64.2 bits), Expect = 9.7e-21, Sum P(3) = 9.7e-21
Identities = 52/141 (36%), Positives = 68/141 (48%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAVGTMSM-----ICTANYEARRFGVRAAMPGFIARKL 164
VDMD F+ VE NP L+ KP AV I +YEAR FGV M A+KL
Sbjct: 12 VDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWADDAKKL 71
Query: 165 CPELIFVPT-------DFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER-- 215
CP+L+ + TKY S ++ Y AS+DEAY+D+T +ER
Sbjct: 72 CPDLLLAQVRESRGKANLTKYREASVEVMEIM-SYFAVIERASIDEAYIDLTSAVQERLQ 130
Query: 216 GISGIEIAEELRTSVYEEAGL 236
+ G I+ +L S Y E GL
Sbjct: 131 KLQGQPISADLLPSTYIE-GL 150
Score = 149 (57.5 bits), Expect = 9.7e-21, Sum P(3) = 9.7e-21
Identities = 39/136 (28%), Positives = 69/136 (50%)
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
G I EE+R ++ + G CSAG++ N++LAK+ +NKPN Q ++ + +V S +
Sbjct: 192 GAMIVEEMRAAIESKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG--SVPQLFSQM 249
Query: 279 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTN 336
PIRKI +G K+ ++ +V GI ++ Q S L + F + ++ G+
Sbjct: 250 PIRKIRSLGGKLGASVI-EVLGIEYMGDLTQFTESQLQSHFGEKNGSWLYAMCRGIEHDP 308
Query: 337 TPQARFRKSISSERTF 352
+ K+I + F
Sbjct: 309 VKPRQLPKTIGCSKNF 324
Score = 57 (25.1 bits), Expect = 9.7e-21, Sum P(3) = 9.7e-21
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 588 DDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQK 621
D C C + +P + + EH+D+H A LQK
Sbjct: 612 DQVLCEKCDSLVP---VWDMPEHTDYHFALELQK 642
>UNIPROTKB|E2RPL9 [details] [associations]
symbol:REV1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003887 GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GO:GO:0017125 GeneTree:ENSGT00530000062942 KO:K03515 CTD:51455
OMA:YRFCRGL EMBL:AAEX03007444 RefSeq:XP_538458.3
Ensembl:ENSCAFT00000003562 GeneID:481337 KEGG:cfa:481337
Uniprot:E2RPL9
Length = 1253
Score = 249 (92.7 bits), Expect = 9.7e-21, Sum P(2) = 9.7e-21
Identities = 95/344 (27%), Positives = 147/344 (42%)
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
I + +YEAR+ G++ M A++LCP L VP DF Y + + Y N A
Sbjct: 508 IASCSYEARQVGIKNGMFFGQAKQLCPNLQAVPYDFHAYKEVARTMYETLASYTHNIEAV 567
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
S DEA +DITE+ E ++ E A +RT + ++ S G+ N LLA++ + KP+
Sbjct: 568 SCDEALVDITEILAETRLTPDEFANAVRTEIKDQTKCAASVGIGSNILLARMATRKAKPD 627
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFS 318
GQ+ L + V FI + + G+G+ E L + GI TC ++ + L F
Sbjct: 628 GQYHLKPEE--VDDFIRGQLVSNLPGVGRSMESKLNSL-GIKTCGDLQYMTMAKLQKEFG 684
Query: 319 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV--TEDK---ALLYRKLAEIAEMLS 373
T GL + RKSIS+E + + T+ K A L EI L
Sbjct: 685 PKTGQMLYRFCRGLDDRPVRTEKERKSISAEINYGIRFTQPKEAEAFLLNLSEEIQRRLE 744
Query: 374 ADMQKEXXXXXXXXXXXXXASFEVR-----------TRAVTLQKYISSSEDILKHA-SVL 421
A K A E TR VTL + S++ I K ++
Sbjct: 745 AAHVKGKRLTLKVMVRKSGAPVETAKFGGHGICDNITRTVTLDQATDSAKIIGKATLNMF 804
Query: 422 LKAELPVS-LRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGH 464
+L +S +R +G+ V Q + P++ ++ SGH
Sbjct: 805 HTMKLNISDMRGVGIHVNQLVPTNPNPSACPSRPSVQ----SGH 844
Score = 84 (34.6 bits), Expect = 9.7e-21, Sum P(2) = 9.7e-21
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAV 134
+HVDMD F+ +V + P LKGKP+AV
Sbjct: 420 MHVDMDCFFVSVGIRNRPDLKGKPVAV 446
>RGD|1309893 [details] [associations]
symbol:Polh "polymerase (DNA directed), eta" species:10116
"Rattus norvegicus" [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006290 "pyrimidine dimer repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0010225 "response to UV-C" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
RGD:1309893 GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
EMBL:CH473987 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
CTD:5429 OMA:SPPLTML OrthoDB:EOG4RBQJ8 InterPro:IPR017061
PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942 IPI:IPI00194322
RefSeq:NP_001101674.1 UniGene:Rn.53711 Ensembl:ENSRNOT00000026049
GeneID:316235 KEGG:rno:316235 UCSC:RGD:1309893 NextBio:670614
Uniprot:D4ADZ0
Length = 689
Score = 164 (62.8 bits), Expect = 2.6e-20, Sum P(3) = 2.6e-20
Identities = 50/141 (35%), Positives = 68/141 (48%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAVGTMSM-----ICTANYEARRFGVRAAMPGFIARKL 164
VDMD F+ VE NP L+ KP AV I +YEAR FGV M A+KL
Sbjct: 12 VDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRNMWADDAKKL 71
Query: 165 CPELIFVPT-------DFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER-- 215
CP+L+ + TKY S ++ + AS+DEAY+D+T +ER
Sbjct: 72 CPDLLLAQVRESRGKANLTKYREASVEVMEIMSHFAV-IERASIDEAYIDLTNAVQERLE 130
Query: 216 GISGIEIAEELRTSVYEEAGL 236
+ G ++ +L S Y E GL
Sbjct: 131 KLQGQPVSADLLPSTYIE-GL 150
Score = 149 (57.5 bits), Expect = 2.6e-20, Sum P(3) = 2.6e-20
Identities = 38/136 (27%), Positives = 69/136 (50%)
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
G I EE+R ++ + G CSAG++ N++LAK+ +NKPN Q ++ + +V S +
Sbjct: 192 GAVIVEEMRAAIERKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG--SVPQLFSQM 249
Query: 279 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTN 336
PIRKI +G K+ ++ DV G+ ++ Q + L + F + ++ G+
Sbjct: 250 PIRKIRSLGGKLGASVI-DVLGVEYMGDLTQFTEAQLQSHFGEKNGSWLYAMCRGIEHEP 308
Query: 337 TPQARFRKSISSERTF 352
+ K+I + F
Sbjct: 309 VKPRQLPKTIGCSKNF 324
Score = 57 (25.1 bits), Expect = 2.6e-20, Sum P(3) = 2.6e-20
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 567 DITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQK 621
++ ++ + +S + Q D C C + +P + + EH D+H A LQK
Sbjct: 587 NVAGNSSLAYNSQEMTQRAAEDQVLCEKCDSLVP---VWDMPEHLDYHFALELQK 638
>UNIPROTKB|F1MHR0 [details] [associations]
symbol:POLI "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:VFYELPE EMBL:DAAA02057088 IPI:IPI00687719
Ensembl:ENSBTAT00000012034 Uniprot:F1MHR0
Length = 701
Score = 281 (104.0 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 92/302 (30%), Positives = 150/302 (49%)
Query: 96 ELEATRDLS-RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRA 154
ELE S R +HVD+D FYA VE +SNP LK KP+ V ++ T NYEAR+ GV+
Sbjct: 30 ELEPAGSSSCRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKK 89
Query: 155 AMPGFIARKLCPELIFVP-TDFTKY---TY-YSDLTRKVFCKYDPNFMAASLDEAYLDIT 209
M A++ CP+L+ V D T+Y +Y +++ K + + ++A ++
Sbjct: 90 LMSVRDAKEKCPQLVLVNGEDLTRYREMSYKVTEMVEKRLEQLQSDELSALTVSGHVYNN 149
Query: 210 EVCRERG------ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFV 263
+ R + G +I E+R ++Y++ GLT AGVA N+LLAK+ S + KPN Q V
Sbjct: 150 QPVNPRDTLHIRLLVGSQIVAEMREAMYQQLGLTGCAGVASNKLLAKLVSGVFKPNQQTV 209
Query: 264 L-PNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGS-LLCAVFSHS 320
L P ++ ++ I+++ GIG K T+ + + GI++ ++ S +L S
Sbjct: 210 LLPESSQELIHSLNH--IKEMPGIGYKTTKRL--EALGISSVRDLQTFPSKVLEKELGIS 265
Query: 321 TADFFLSVGLGLGSTNTPQARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADM 376
A + G + + +S S E +F S E K + LA + + D
Sbjct: 266 VAQRIQKLSFGEDDSPVTPSGPPQSFSEEDSFKKCSSEVEAKTKIEELLASLLNRVCQDG 325
Query: 377 QK 378
+K
Sbjct: 326 RK 327
Score = 38 (18.4 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 611 SDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEK 659
S FH LQ E+ S R ++ V T H R+++ EK
Sbjct: 616 SVFHSFPNLQSEQLLSKNRTTDSHKQPVATVSRHEGLKENREQESPDEK 664
>TAIR|locus:2156309 [details] [associations]
symbol:POLH "Y-family DNA polymerase H" species:3702
"Arabidopsis thaliana" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=IEA;ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010224 "response to UV-B" evidence=IMP]
[GO:0042276 "error-prone translesion synthesis" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0042732 "D-xylose metabolic process" evidence=RCA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 EMBL:CP002688
GO:GO:0003684 GO:GO:0010224 GO:GO:0003887 GO:GO:0042276
Gene3D:3.30.1490.100 SUPFAM:SSF100879 HSSP:P96022 KO:K03509
InterPro:IPR017061 PIRSF:PIRSF036603 EMBL:AJ416380 IPI:IPI00537089
RefSeq:NP_568638.2 UniGene:At.19023 SMR:Q8H2D5 IntAct:Q8H2D5
STRING:Q8H2D5 EnsemblPlants:AT5G44740.2 GeneID:834503
KEGG:ath:AT5G44740 TAIR:At5g44740 InParanoid:Q8H2D5 OMA:CPLRYGT
ProtClustDB:CLSN2680435 Genevestigator:Q8H2D5 Uniprot:Q8H2D5
Length = 672
Score = 182 (69.1 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 55/175 (31%), Positives = 92/175 (52%)
Query: 213 RERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 271
R++ +S GI I ELR V +E TCSAG+A N++LAK+ S +NKP Q V+P AV
Sbjct: 181 RDKLLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPY--AAV 238
Query: 272 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGL 330
+SSLPI+K+ +G L+ G++T ++LQ + L + +T + ++
Sbjct: 239 QELLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIAR 298
Query: 331 GLGSTNTPQARFRKSISSERTF-------SVTEDKALLYRKLAEIAEMLSADMQK 378
G+ KS S +TF S++ + L + E++E L +D+++
Sbjct: 299 GISGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQ 353
Score = 141 (54.7 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 40/114 (35%), Positives = 54/114 (47%)
Query: 109 HVDMDAFYAAVETLSNPSLKGKPMAVGTMSM-----ICTANYEARRFGVRAAMPGFIARK 163
HVDMD FY VE P L+G P AV + + +YEAR+ GV+ +M G A+
Sbjct: 16 HVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEARKCGVKRSMRGDEAKA 75
Query: 164 LCPE--LIFVPT-----DFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE 210
CP+ L+ VP D Y + K AS+DE YLD+T+
Sbjct: 76 ACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAK-SGKCERASIDEVYLDLTD 128
>UNIPROTKB|F1N787 [details] [associations]
symbol:REV1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 GO:GO:0009411 GO:GO:0000287 GO:GO:0003684
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887
GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879 GO:GO:0017125
GeneTree:ENSGT00530000062942 OMA:YRFCRGL EMBL:DAAA02030163
EMBL:DAAA02030164 EMBL:DAAA02030165 EMBL:DAAA02030166
EMBL:DAAA02030167 EMBL:DAAA02030168 IPI:IPI00731687
Ensembl:ENSBTAT00000061518 Uniprot:F1N787
Length = 1202
Score = 241 (89.9 bits), Expect = 6.5e-20, Sum P(2) = 6.5e-20
Identities = 72/241 (29%), Positives = 109/241 (45%)
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
I + +YEAR+ G+R M A++LCP L VP DF Y + + Y + A
Sbjct: 457 IASCSYEARQVGIRNGMYFGYAKQLCPNLQAVPYDFHAYKEVAQTMYETLASYTHDIEAV 516
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
S DEA +DITE+ E ++ E A +R + ++ S G+ N LLA++ + KP+
Sbjct: 517 SCDEALVDITEILAETRLTPDEFANAVRMEIKDQTKCAASVGIGSNILLARMATRKAKPD 576
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFS 318
GQ+ L + V FI + + G+G+ E L + GI TC ++ + L F
Sbjct: 577 GQYHLKPEE--VDDFIRGQLVTNLPGVGRSMESKLMSL-GIRTCGDLQYMTMAKLQKEFG 633
Query: 319 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-----EDKALLYRKLAEIAEMLS 373
T GL + RKSIS+E + + E +A L EI L
Sbjct: 634 SKTGQMLYRFCRGLDDRPVRTEKERKSISAEINYGIRFSQPKEAEAFLLSLSEEIQRRLE 693
Query: 374 A 374
A
Sbjct: 694 A 694
Score = 84 (34.6 bits), Expect = 6.5e-20, Sum P(2) = 6.5e-20
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAV 134
+HVDMD F+ +V + P LKGKP+AV
Sbjct: 369 MHVDMDCFFVSVGIRNRPDLKGKPVAV 395
>UNIPROTKB|Q9UBZ9 [details] [associations]
symbol:REV1 "DNA repair protein REV1" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017125 "deoxycytidyl transferase
activity" evidence=IEA] [GO:0042276 "error-prone translesion
synthesis" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009411 "response to UV" evidence=IDA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] Reactome:REACT_216 InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0005654
GO:GO:0000287 GO:GO:0003684 GO:GO:0006260 EMBL:AC018690
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887
GO:GO:0042276 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
PDB:3VU7 PDBsum:3VU7 GO:GO:0017125 PDB:2LSK PDBsum:2LSK KO:K03515
CTD:51455 HOGENOM:HOG000154094 HOVERGEN:HBG054140 OrthoDB:EOG4GF3DF
EMBL:AF151538 EMBL:AF206019 EMBL:AB047646 EMBL:AF357886
EMBL:AK002087 EMBL:AJ131720 IPI:IPI00008816 IPI:IPI00552928
IPI:IPI00552936 RefSeq:NP_001032961.1 RefSeq:NP_057400.1
UniGene:Hs.443077 PDB:2EBW PDB:2LSY PDB:3GQC PDBsum:2EBW
PDBsum:2LSY PDBsum:3GQC ProteinModelPortal:Q9UBZ9 SMR:Q9UBZ9
MINT:MINT-140323 STRING:Q9UBZ9 PhosphoSite:Q9UBZ9 DMDM:59798439
PaxDb:Q9UBZ9 PRIDE:Q9UBZ9 Ensembl:ENST00000258428
Ensembl:ENST00000393445 GeneID:51455 KEGG:hsa:51455 UCSC:uc002tac.3
UCSC:uc002tad.3 UCSC:uc002tae.1 GeneCards:GC02M100016
HGNC:HGNC:14060 HPA:HPA044534 HPA:HPA051036 MIM:606134
neXtProt:NX_Q9UBZ9 PharmGKB:PA162401120 InParanoid:Q9UBZ9
OMA:YRFCRGL PhylomeDB:Q9UBZ9 ChiTaRS:REV1 EvolutionaryTrace:Q9UBZ9
GenomeRNAi:51455 NextBio:55069 ArrayExpress:Q9UBZ9 Bgee:Q9UBZ9
CleanEx:HS_REV1 Genevestigator:Q9UBZ9 GermOnline:ENSG00000135945
Uniprot:Q9UBZ9
Length = 1251
Score = 238 (88.8 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 73/245 (29%), Positives = 110/245 (44%)
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
I + +YEAR+ G++ M A++LCP L VP DF Y + + Y N A
Sbjct: 508 IASCSYEARQLGIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAV 567
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
S DEA +DITE+ E ++ E A +R + ++ S G+ N LLA++ + KP+
Sbjct: 568 SCDEALVDITEILAETKLTPDEFANAVRMEIKDQTKCAASVGIGSNILLARMATRKAKPD 627
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFS 318
GQ+ L + V FI + + G+G E L + GI TC ++ + L F
Sbjct: 628 GQYHLKPEE--VDDFIRGQLVTNLPGVGHSMESKLASL-GIKTCGDLQYMTMAKLQKEFG 684
Query: 319 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV--TEDK---ALLYRKLAEIAEMLS 373
T GL + RKS+S+E + + T+ K A L EI L
Sbjct: 685 PKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLE 744
Query: 374 ADMQK 378
A K
Sbjct: 745 ATGMK 749
Score = 84 (34.6 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAV 134
+HVDMD F+ +V + P LKGKP+AV
Sbjct: 420 MHVDMDCFFVSVGIRNRPDLKGKPVAV 446
>UNIPROTKB|F1STE9 [details] [associations]
symbol:REV1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009411 GO:GO:0000287
GO:GO:0003684 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003887 GO:GO:0042276 Gene3D:3.30.1490.100 SUPFAM:SSF100879
GO:GO:0017125 GeneTree:ENSGT00530000062942 OMA:YRFCRGL
EMBL:FP326722 EMBL:CU972417 EMBL:CU694748
Ensembl:ENSSSCT00000008958 Uniprot:F1STE9
Length = 1253
Score = 238 (88.8 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 65/216 (30%), Positives = 101/216 (46%)
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
I + +YEAR+ G+R M A++LCP L VP DF Y + + Y N A
Sbjct: 507 IASCSYEARQVGIRNGMYFGQAKQLCPSLQAVPYDFHAYKEVARTMYETLASYTHNIEAV 566
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
S DEA +DITE+ E ++ E A +R + ++ S G+ N LLA++ + KP+
Sbjct: 567 SCDEALVDITEILAETRLTPDEFANAVRMEIKDQTKCAASVGIGSNILLARMATRKAKPD 626
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFS 318
GQ+ L + V FI + + G+G+ E L + GI TC ++ + L F
Sbjct: 627 GQYHLKPEE--VDDFIRGQLVTNLPGVGRSMESKLMSL-GIRTCGDLQYMTMAKLQKEFG 683
Query: 319 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV 354
T GL + RKS+S+E + +
Sbjct: 684 PKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGI 719
Score = 84 (34.6 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAV 134
+HVDMD F+ +V + P LKGKP+AV
Sbjct: 417 MHVDMDCFFVSVGIRNRPDLKGKPVAV 443
>MGI|MGI:1929074 [details] [associations]
symbol:Rev1 "REV1 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0017125
"deoxycytidyl transferase activity" evidence=IDA] [GO:0042276
"error-prone translesion synthesis" evidence=IDA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 MGI:MGI:1929074 Pfam:PF00533 GO:GO:0005634
GO:GO:0009411 GO:GO:0000287 GO:GO:0003684 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887
GO:GO:0042276 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
PDB:4FJO PDBsum:4FJO GO:GO:0017125 GeneTree:ENSGT00530000062942
PDB:2LSJ PDBsum:2LSJ KO:K03515 CTD:51455 HOGENOM:HOG000154094
HOVERGEN:HBG054140 OrthoDB:EOG4GF3DF OMA:YRFCRGL ChiTaRS:REV1
EMBL:AB057418 EMBL:AF179302 EMBL:BC058093 IPI:IPI00396706
RefSeq:NP_062516.2 UniGene:Mm.389103 PDB:2LSG PDBsum:2LSG
ProteinModelPortal:Q920Q2 SMR:Q920Q2 DIP:DIP-41772N IntAct:Q920Q2
STRING:Q920Q2 PhosphoSite:Q920Q2 PRIDE:Q920Q2
Ensembl:ENSMUST00000027251 GeneID:56210 KEGG:mmu:56210
UCSC:uc007asp.1 InParanoid:Q920Q2 NextBio:312050 Bgee:Q920Q2
CleanEx:MM_REV1 Genevestigator:Q920Q2 GermOnline:ENSMUSG00000026082
Uniprot:Q920Q2
Length = 1249
Score = 231 (86.4 bits), Expect = 8.8e-19, Sum P(2) = 8.8e-19
Identities = 71/241 (29%), Positives = 109/241 (45%)
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
I + +YEAR+ G++ M A++LCP L VP DF + + Y + A
Sbjct: 506 IASCSYEARQVGIKNGMFFGYAKQLCPNLQAVPYDFHACREVAQAMYETLASYTHSIEAV 565
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
S DEA +D+T++ E +S E A LR + ++ S G+ N LLA++ + KP+
Sbjct: 566 SCDEALIDVTDILAETKLSPEEFAAALRIEIKDKTKCAASVGIGSNILLARMATKKAKPD 625
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFS 318
GQ+ L D V FI + + G+G+ E L + GI TC ++ + L F
Sbjct: 626 GQYHLQPDE--VDDFIRGQLVTNLPGVGRSMESKLASL-GIKTCGDLQCLTMAKLQKEFG 682
Query: 319 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV--TEDK---ALLYRKLAEIAEMLS 373
T GL + RKS+S+E + + T+ K A L EI L
Sbjct: 683 PKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLE 742
Query: 374 A 374
A
Sbjct: 743 A 743
Score = 84 (34.6 bits), Expect = 8.8e-19, Sum P(2) = 8.8e-19
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAV 134
+HVDMD F+ +V + P LKGKP+AV
Sbjct: 418 MHVDMDCFFVSVGIRNRPDLKGKPVAV 444
>ZFIN|ZDB-GENE-060421-4949 [details] [associations]
symbol:polh "polymerase (DNA directed), eta"
species:7955 "Danio rerio" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 ZFIN:ZDB-GENE-060421-4949 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879
InterPro:IPR017061 PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942
EMBL:AL929536 IPI:IPI00758987 Ensembl:ENSDART00000139589
OMA:MKSLEKH ArrayExpress:F1Q7Z9 Bgee:F1Q7Z9 Uniprot:F1Q7Z9
Length = 749
Score = 147 (56.8 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
Identities = 39/136 (28%), Positives = 64/136 (47%)
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
G I E++R +V E G CSAG++ N++LAK+ +NKPN Q VLP +V S+L
Sbjct: 192 GALIVEQMRAAVEEHTGFRCSAGISHNKVLAKLACGLNKPNRQTVLPLS--SVPQLFSTL 249
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
PI KI +G + + + ++ + + L F T + + G+
Sbjct: 250 PISKIRNLGGKLGSSITETLSVENMGDLTRFSRAQLEQHFGDKTGPWLYDLCRGIEFEPV 309
Query: 338 PQARFRKSISSERTFS 353
+ KSI + F+
Sbjct: 310 KPRQLPKSIGCSKNFA 325
Score = 144 (55.7 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
Identities = 46/118 (38%), Positives = 57/118 (48%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAVGTMSM-----ICTANYEARRFGVRAAMPGFIARKL 164
VDMD FY VE P LK KP V I +YEAR GV M ARKL
Sbjct: 12 VDMDCFYVQVEQRLKPELKNKPCVVAQYKTWKGGGIIAVSYEARAHGVGRNMFADDARKL 71
Query: 165 CPELIF--VPTDFTK--YTYYSDLTRKVFCKYDPNFMA---ASLDEAYLDITEVCRER 215
CP+L VP K T+Y + + +V + F AS+DEAY+D+T +ER
Sbjct: 72 CPDLQVARVPEAHGKADLTHYREASVEVI-EVMSRFAVIERASIDEAYMDLTASVQER 128
Score = 62 (26.9 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 592 CSLCGTEMPPSFIEERQEHSDFHLAERLQKE-ESGSDLRILT 632
C CG ++ + E EH+D+H A LQK SGS ++ T
Sbjct: 686 CERCGMKV---LVWEFPEHADYHFALDLQKSFSSGSPSQMKT 724
Score = 45 (20.9 bits), Expect = 1.0e-18, Sum P(4) = 1.0e-18
Identities = 17/80 (21%), Positives = 34/80 (42%)
Query: 520 ENCSFSNKISEVEKIHENEV-SQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSS 578
EN + + + + + + E+ + L G+ E +C D + I+ + +
Sbjct: 480 ENTTSISAFFQRKSLEKQEIQNSLCPGDQSTSASGEHACGDTAAQKTTAISTFLQRESLE 539
Query: 579 NQKDQFIWLDDYKCSLCGTE 598
Q+ Q + LDD S+C E
Sbjct: 540 KQEIQNVSLDDEDQSVCAPE 559
>RGD|1306715 [details] [associations]
symbol:Rev1 "REV1, polymerase (DNA directed)" species:10116
"Rattus norvegicus" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0009411 "response to UV" evidence=IEA;ISO] [GO:0017125
"deoxycytidyl transferase activity" evidence=IEA;ISO] [GO:0042276
"error-prone translesion synthesis" evidence=IEA;ISO]
InterPro:IPR001126 InterPro:IPR012112 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573
PROSITE:PS50173 InterPro:IPR001357 Pfam:PF00533 RGD:1306715
GO:GO:0000287 GO:GO:0003684 GO:GO:0006281 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:CH473965 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
KO:K03515 CTD:51455 OrthoDB:EOG4GF3DF IPI:IPI00951348
RefSeq:NP_001101683.1 UniGene:Rn.94641 Ensembl:ENSRNOT00000067197
GeneID:316344 KEGG:rno:316344 UCSC:RGD:1306715 NextBio:670745
Uniprot:D3ZRU9
Length = 1119
Score = 227 (85.0 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 70/241 (29%), Positives = 107/241 (44%)
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
I + +YEAR+ G++ M A++LCP L VP DF + + Y + A
Sbjct: 506 IASCSYEARQVGIKNGMFFGHAKQLCPNLQAVPYDFHACREVAQALYETLASYTHSIEAV 565
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
S DEA +D+T++ E +S E A LR + + S G+ N LLA++ + KP+
Sbjct: 566 SCDEALIDVTDILAETKLSPEEFAAALRMEIKNKTQCAASVGIGSNILLARMATKKAKPD 625
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFS 318
GQ+ L D V FI + + G+G+ E L + GI TC ++ + L F
Sbjct: 626 GQYHLQPDE--VDDFIRGQLVTSLPGVGRSMESKLASL-GIKTCGDLQCLTMAKLQKEFG 682
Query: 319 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT-----EDKALLYRKLAEIAEMLS 373
T GL + RKS+S+E + + E +A L EI L
Sbjct: 683 PKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPREAEAFLLSLSGEIQSRLE 742
Query: 374 A 374
A
Sbjct: 743 A 743
Score = 84 (34.6 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAV 134
+HVDMD F+ +V + P LKGKP+AV
Sbjct: 418 MHVDMDCFFVSVGIRNRPDLKGKPVAV 444
>FB|FBgn0037554 [details] [associations]
symbol:DNApol-iota "DNApol-iota" species:7227 "Drosophila
melanogaster" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP;IDA;NAS] [GO:0019985 "translesion synthesis"
evidence=ISS;NAS;IDA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
EMBL:AE014297 GO:GO:0003684 GO:GO:0003887 GO:GO:0019985
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879 HSSP:P96022
GeneTree:ENSGT00530000062942 KO:K03510 EMBL:AY051762 EMBL:AB049434
RefSeq:NP_649772.1 RefSeq:NP_731214.1 UniGene:Dm.9926 SMR:Q9VHV1
IntAct:Q9VHV1 MINT:MINT-308720 EnsemblMetazoa:FBtr0081797
EnsemblMetazoa:FBtr0081798 GeneID:40965 KEGG:dme:Dmel_CG7602
UCSC:CG7602-RA CTD:40965 FlyBase:FBgn0037554 InParanoid:Q9VHV1
OMA:CCAGIAY OrthoDB:EOG42RBPH GenomeRNAi:40965 NextBio:821498
Uniprot:Q9VHV1
Length = 737
Score = 165 (63.1 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 36/112 (32%), Positives = 58/112 (51%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKL 164
R+ +H+DMD FYA VE + +P+L+ K + + +++ T NY AR GV M A+++
Sbjct: 15 RTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNIVVTCNYVARAKGVTKLMLIAEAQRI 74
Query: 165 CPELIFVP-TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 215
CP+L+ V D Y S + Y P DE ++D+T + R
Sbjct: 75 CPDLVLVNGEDLAPYRQMSQRIFDLLLNYTPLVEKLGFDENFMDVTALVELR 126
Score = 144 (55.7 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 47/170 (27%), Positives = 85/170 (50%)
Query: 212 CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 271
C +R G IA+E+R + G+TC AG+A N+LLAK+ ++PN Q VL +
Sbjct: 157 CAQRLAIGTRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSSHEPNQQTVLVSTYAE- 215
Query: 272 MTFISSL-PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVG 329
F+ L ++++ GIG+ T+ +L + G+++ E++ Q ++ F TA +
Sbjct: 216 -QFMRELGDLKRVTGIGQKTQCLLLEA-GMSSVEQLQQCDMDVMRKKFGFETATRLRDLA 273
Query: 330 LGLGSTNTPQARFRKSISSE---RTFSVTEDKALLYRKLAE-IAEMLSAD 375
G ++ + K+I E + SV D +R L + + E ++ D
Sbjct: 274 FGRDTSLVRPSGKPKTIGMEDACKPISVRTDVEERFRMLLKRLVEQVAED 323
Score = 44 (20.5 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 427 PVSLRLIGLRVTQFNEDKVRAPS 449
P ++ L+GL ++F E KV + S
Sbjct: 399 PFNITLLGLAFSKFQERKVGSSS 421
>UNIPROTKB|F1MZ79 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010225 "response to UV-C" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 OMA:SPPLTML
InterPro:IPR017061 PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942
EMBL:DAAA02055099 IPI:IPI00691559 Ensembl:ENSBTAT00000007900
Uniprot:F1MZ79
Length = 710
Score = 143 (55.4 bits), Expect = 9.6e-18, Sum P(3) = 9.6e-18
Identities = 44/118 (37%), Positives = 57/118 (48%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAVGTMSM-----ICTANYEARRFGVRAAMPGFIARKL 164
VDMD F VE NP L+ KP AV + I +YEAR FGV M A+KL
Sbjct: 12 VDMDCF-VQVEQRQNPHLRNKPCAVVQYTSWKGGGIVAVSYEARAFGVTRNMWADDAKKL 70
Query: 165 CPELIFVP-------TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 215
CP+L+ + TKY S +V ++ S+DEAYLD+T +ER
Sbjct: 71 CPDLLLAQIRELHGKANLTKYRDASMEVMEVMSRFAV-MERGSIDEAYLDLTSAVQER 127
Score = 134 (52.2 bits), Expect = 9.6e-18, Sum P(3) = 9.6e-18
Identities = 29/91 (31%), Positives = 53/91 (58%)
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
G I EE+R ++ + G CSAG++ N++LAK+ +NKPN Q ++ + +V + +
Sbjct: 192 GAVIVEEMRAAIERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG--SVPQLFNQV 249
Query: 279 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQ 308
PI KI +G K+ ++ ++ G+ E+ Q
Sbjct: 250 PISKIRNLGGKLGASVI-EILGVEYMGELTQ 279
Score = 70 (29.7 bits), Expect = 9.6e-18, Sum P(3) = 9.6e-18
Identities = 21/86 (24%), Positives = 40/86 (46%)
Query: 573 KVGTSSNQKDQFIWLDDY-KCSLCGTEMPPSFIEERQEHSDFHLAERLQK---EESGSDL 628
+V + F+ +D C CG+ +P + + EHSD+H A LQ + S+
Sbjct: 612 EVAQKATMTSSFLAAEDQVPCEKCGSLVP---VWDMPEHSDYHFALELQNSFLQPHSSNP 668
Query: 629 RIL-THRERCVRTQRDHIASHRKRKK 653
+++ + R + +AS+ KR +
Sbjct: 669 QVVPASSPQSKRNPKSPLASNNKRPR 694
Score = 41 (19.5 bits), Expect = 8.8e-15, Sum P(3) = 8.8e-15
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 303 CEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDK 358
CE+ML+ GS A LS L ST+ + + +++S +F ED+
Sbjct: 576 CEKMLKLGSPKTTPTEMDLAQNSLSSLASLTSTSALEVAQKATMTS--SFLAAEDQ 629
>POMBASE|SPBC1347.01c [details] [associations]
symbol:rev1 "deoxycytidyl transferase Rev1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005819 "spindle" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0017125
"deoxycytidyl transferase activity" evidence=ISO] [GO:0043504
"mitochondrial DNA repair" evidence=IC] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISO] InterPro:IPR001126
InterPro:IPR012112 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PIRSF:PIRSF036573 PROSITE:PS50173
InterPro:IPR001357 PomBase:SPBC1347.01c Pfam:PF00533 GO:GO:0005739
GO:GO:0005730 GO:GO:0005819 GO:GO:0000287 GO:GO:0003684
GO:GO:0006260 EMBL:CU329671 GenomeReviews:CU329671_GR SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003887 GO:GO:0043504
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879 GO:GO:0017125
KO:K03515 RefSeq:NP_596693.2 ProteinModelPortal:O94623
IntAct:O94623 STRING:O94623 EnsemblFungi:SPBC1347.01c.1
GeneID:2539723 KEGG:spo:SPBC1347.01c OMA:FHIDFDC OrthoDB:EOG49PF6V
NextBio:20800875 Uniprot:O94623
Length = 935
Score = 251 (93.4 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 78/257 (30%), Positives = 124/257 (48%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFI 160
SR LHVD D F+A+V T + L+ KP+AV S I + NYEAR+FG++ M
Sbjct: 276 SRFLLHVDFDCFFASVSTRFSHELRLKPVAVAHGIKNSEIASCNYEARKFGIKNGMYVGT 335
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA-SLDEAYLDITEVCRERGISG 219
A+ LCP L V DF Y S + +++ S+DEA LDIT
Sbjct: 336 AKNLCPSLRVVDYDFGAYESVSREFYTILVNTLHDYIKVISIDEALLDITSSVSSFQ-DC 394
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
EIAE +R+ V E+ S G+ PN LLA++ KP+ + L + V +S L
Sbjct: 395 FEIAESIRSQVREKTNCEVSVGIGPNVLLARLALRKAKPHNVYSLSIEN--VFDVLSPLS 452
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
++ + G+G L +++G+ T ++ ++K +L F + ++ G+ +
Sbjct: 453 VQDLPGVGSSQAQKLFNLYGVRTIGQLQRIEKFNLQ-ETFGVNYGLHLYNISRGIDTDII 511
Query: 338 PQARFRKSISSERTFSV 354
R+SIS + + V
Sbjct: 512 NNETPRRSISVDVNWGV 528
>CGD|CAL0001748 [details] [associations]
symbol:orf19.4412 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005819 "spindle" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0017125 "deoxycytidyl transferase activity"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0070987 "error-free translesion synthesis"
evidence=IEA] [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] InterPro:IPR001126 InterPro:IPR012112
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PIRSF:PIRSF036573 PROSITE:PS50173 InterPro:IPR001357 CGD:CAL0001748
Pfam:PF00533 GO:GO:0000287 GO:GO:0003684 GO:GO:0006281
EMBL:AACQ01000179 EMBL:AACQ01000178 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03515 RefSeq:XP_711860.1 RefSeq:XP_723600.1
ProteinModelPortal:Q59Q77 STRING:Q59Q77 GeneID:3646519
GeneID:3646539 KEGG:cal:CaO19.11890 KEGG:cal:CaO19.4412
Uniprot:Q59Q77
Length = 1113
Score = 259 (96.2 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 82/272 (30%), Positives = 128/272 (47%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGK--PMAV---GTMSMICTANYEARRFGVRAAMPGFIAR 162
+H+D D F+A L P L P+AV G S I + NY AR++GV+ M A
Sbjct: 393 MHIDFDCFFATASCLKRPDLDSSKHPIAVSHGGKTSDIASCNYVARKYGVKNGMWLMQAT 452
Query: 163 KLCPELIFVPTDFTKYTYYSD--LTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 219
KLCP+LI +P +F Y +S + K+ + S+DE +D T C G+S
Sbjct: 453 KLCPDLILLPYEFESYEKFSSEFYNYLLTSKFFDSIFPVSIDEVLVDATSYCHS-GVSDS 511
Query: 220 IEIAEELRTSVYEEA-GLT-C--SAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
+ + EL T + ++ LT C S G + N LLAK+ KPNGQF L +D + F+
Sbjct: 512 VSLVNELATRIRKDVFKLTNCPVSVGASTNVLLAKLALRKAKPNGQFYLFDD---IEKFL 568
Query: 276 SSLPIRKIGGIGK-VTEHILRDVFGINT-CEEMLQ-KGSLLCAVFSHSTADFFLSVGLGL 332
S+ I+ + G G+ + E + ++ N ++++ L + T G+
Sbjct: 569 ESIYIKDLPGFGRGILEKLNSEIQSSNPQIKDVVTISKQRLVQLLGEKTGTKLFEYARGM 628
Query: 333 GST------NTPQARF-RKSISSERTFSVTED 357
T N P+A RKS+S + F + D
Sbjct: 629 DETSIEIDTNNPEAVLGRKSVSVDVNFGIRFD 660
Score = 39 (18.8 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 78 LTSPVISHYQKVADKRIL 95
L +I+H K+ DK+ L
Sbjct: 71 LDEEIINHVNKIDDKKAL 88
>WB|WBGene00014066 [details] [associations]
symbol:rev-1 species:6239 "Caenorhabditis elegans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR001126 InterPro:IPR012112
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PIRSF:PIRSF036573 PROSITE:PS50173 InterPro:IPR001357 GO:GO:0009792
GO:GO:0006898 GO:GO:0040010 GO:GO:0000287 GO:GO:0003684
GO:GO:0006281 GO:GO:0006974 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 GeneTree:ENSGT00530000062942 EMBL:Z46812 KO:K03515
PIR:T27970 RefSeq:NP_495663.1 ProteinModelPortal:Q09615 SMR:Q09615
IntAct:Q09615 MINT:MINT-227346 STRING:Q09615 EnsemblMetazoa:ZK675.2
GeneID:174275 KEGG:cel:CELE_ZK675.2 UCSC:ZK675.2 CTD:174275
WormBase:ZK675.2 HOGENOM:HOG000016674 InParanoid:Q09615 OMA:DWITESI
NextBio:883331 Uniprot:Q09615
Length = 1027
Score = 229 (85.7 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 78/300 (26%), Positives = 137/300 (45%)
Query: 91 DKRILELEA-TRDLSR--SWLHVDMDAFYAAVETLSNPSLKGKPMAV----GT----MSM 139
+K ++++++ + ++SR + HVD+D F+ +V + LK K +A+ GT MS
Sbjct: 421 EKELIDMKSLSNEISRESTVFHVDLDCFFVSVAVRNRIDLKHKEVAITHSKGTISNSMSE 480
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ + +Y AR GV+ M A + CP+L +P F Y S ++ Y A
Sbjct: 481 VASCSYAARDCGVKNGMLVRDALQKCPQLTLLPYQFEDYVQVSRKIYEILASYTLEVRAV 540
Query: 200 SLDEAYLDITEVCRERGISGIEI-AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 258
S DE Y++++ C + I+ I AE +R + E+ S G+ LLA++ + KP
Sbjct: 541 SCDEMYINMSSFCEKYEINDPTILAEHIRKVIREKTQCPASVGIGSTSLLARLATRHAKP 600
Query: 259 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFG-INTCEEM-LQKGSLLCAV 316
+G F + + FIS ++ + G G + L FG I C E+ L+ L V
Sbjct: 601 DGVFWVNAHKKN--EFISEEKVKDLPGFGYEMMNRLTSFFGDITKCRELQLKTERELVPV 658
Query: 317 FSHSTADFFLSVGLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA 374
F A L G+ RKS+S + + + + K E+ ++++A
Sbjct: 659 FGPKLASKILRQCRGIEEDPDDFWATHVRKSVSCDINYGIR------FTKRGEVIQLMTA 712
>UNIPROTKB|B4DG64 [details] [associations]
symbol:POLH "DNA polymerase eta" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006290 "pyrimidine dimer repair" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0006301
GO:GO:0003887 GO:GO:0006290 Gene3D:3.30.1490.100 SUPFAM:SSF100879
EMBL:AL353602 EMBL:AL355802 UniGene:Hs.655467 HGNC:HGNC:9181
HOVERGEN:HBG053633 InterPro:IPR017061 PIRSF:PIRSF036603
EMBL:AK294430 IPI:IPI00646080 SMR:B4DG64 STRING:B4DG64
Ensembl:ENST00000535400 Uniprot:B4DG64
Length = 651
Score = 159 (61.0 bits), Expect = 3.1e-14, Sum P(3) = 3.1e-14
Identities = 67/267 (25%), Positives = 122/267 (45%)
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
G I EE+R ++ E G CSAG++ N++LAK+ +NKPN Q ++ + +V S +
Sbjct: 131 GAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG--SVPQLFSQM 188
Query: 279 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTN 336
PIRKI +G K+ ++ ++ GI E+ Q S L + F + ++ G+
Sbjct: 189 PIRKIRSLGGKLGASVI-EILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDP 247
Query: 337 TPQARFRKSISSERTFS-----VTEDKALLYR-KLA-EIAEMLSADMQKEXXXXXXXXXX 389
+ K+I + F T ++ + +LA E+ E L+ D + +
Sbjct: 248 VKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKD-RNDNDRVATQLVV 306
Query: 390 XXXASFEVRT----RAVTLQKYISS--SED---ILKHASVL-LKAELPVSLRLIGLRVTQ 439
+ R R L +Y + S D ++K+ + ++ E L ++ L T+
Sbjct: 307 SIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSGIQTEWSPPLTMLFLCATK 366
Query: 440 FNEDKVRAPSDPTQKTLTNFMTSGHAS 466
F+ APS T +T+F++S +S
Sbjct: 367 FSAS---APSSSTD--ITSFLSSDPSS 388
Score = 87 (35.7 bits), Expect = 3.1e-14, Sum P(3) = 3.1e-14
Identities = 28/85 (32%), Positives = 43/85 (50%)
Query: 161 ARKLCPELIFVPT-------DFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR 213
A+KLCP+L+ + TKY S ++ ++ AS+DEAY+D+T +
Sbjct: 6 AKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAV-IERASIDEAYVDLTSAVQ 64
Query: 214 ER--GISGIEIAEELRTSVYEEAGL 236
ER + G I+ +L S Y E GL
Sbjct: 65 ERLQKLQGQPISADLLPSTYIE-GL 88
Score = 64 (27.6 bits), Expect = 3.1e-14, Sum P(3) = 3.1e-14
Identities = 27/100 (27%), Positives = 41/100 (41%)
Query: 522 CSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQK 581
C +K+ E K E+ L NS + S V EV + TP+ + + +Q
Sbjct: 516 CEGVSKLEESSKATPAEMD--LAHNSQSMHASSAS--KSVLEVTQKATPNPSLLAAEDQ- 570
Query: 582 DQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQK 621
C CG+ +P + + EH D+H A LQK
Sbjct: 571 --------VPCEKCGSLVP---VWDMPEHMDYHFALELQK 599
>ASPGD|ASPL0000072145 [details] [associations]
symbol:AN4678 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0019985 "translesion synthesis"
evidence=IEA] [GO:0034087 "establishment of mitotic sister
chromatid cohesion" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:BN001303
EMBL:AACD01000080 GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03509 OrthoDB:EOG4M0J8V InterPro:IPR017061
PIRSF:PIRSF036603 RefSeq:XP_662282.1 ProteinModelPortal:Q5B452
STRING:Q5B452 EnsemblFungi:CADANIAT00005754 GeneID:2872476
KEGG:ani:AN4678.2 HOGENOM:HOG000173699 OMA:DDPDWDD Uniprot:Q5B452
Length = 674
Score = 153 (58.9 bits), Expect = 3.1e-14, Sum P(3) = 3.1e-14
Identities = 60/206 (29%), Positives = 98/206 (47%)
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
G EI +RT+V+ TCSAG+A N+++AK+ S NKPN Q V+ N A+ F+S
Sbjct: 263 GAEIVRSVRTAVWNSLSYTCSAGIAKNKMMAKLGSATNKPNKQTVVRN--RAIQNFLSGF 320
Query: 279 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGST 335
KI +G K+ + + +FG E+L K SL A + TA + + G +
Sbjct: 321 KFTKIRMLGGKLGDQVTA-MFGTEQISELL-KVSLEQFRAKLNDDTAVWLYGIIRGEDKS 378
Query: 336 NT-PQARFRKSISSERTF--SV-TEDKA--LLYRKLAEIAEMLSADMQKEXXXXXXXXXX 389
P+ + KS+ S ++F S+ T D+A L+ A+I L + E
Sbjct: 379 EVNPRTQI-KSMLSAKSFRPSINTLDQADKWLHIFAADIYGRLVEEGVLEHKRRPKTIAL 437
Query: 390 XXXASFEVRTRAVTLQKYISSSEDIL 415
+V++R + + + ED+L
Sbjct: 438 HHRQGAQVKSRQLPIPGSATIDEDLL 463
Score = 102 (41.0 bits), Expect = 3.1e-14, Sum P(3) = 3.1e-14
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 109 HVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
H+D+DAFYA E + + + +P+AV + NY AR+FG+ + A+ C ++
Sbjct: 47 HIDLDAFYAQCEMVRLGTPRERPLAVQQWDSLIAINYPARKFGITRMISAKEAKAKCADI 106
Query: 169 I 169
+
Sbjct: 107 V 107
Score = 56 (24.8 bits), Expect = 3.1e-14, Sum P(3) = 3.1e-14
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 567 DITPDNKV---GTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEE 623
DI DN +S+ + + + ++C CG + E EH+D+H A+ L+ +E
Sbjct: 575 DINVDNAQLDDHVASDGEIEQVHSKSFRCPRCGRYINCG---EEDEHNDWHFAKDLETQE 631
>UNIPROTKB|J3KQ09 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI ProteinModelPortal:J3KQ09 Ensembl:ENST00000406285
Uniprot:J3KQ09
Length = 661
Score = 210 (79.0 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 44/113 (38%), Positives = 66/113 (58%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARK 163
SR +HVD+D FYA VE +SNP LK KP+ V ++ T NYEAR+ GV+ M A++
Sbjct: 52 SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMNVRDAKE 111
Query: 164 LCPELIFVP-TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 215
CP+L+ V D T+Y S ++ ++ P DE ++D+TE+ +R
Sbjct: 112 KCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKR 164
Score = 51 (23.0 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 26/97 (26%), Positives = 42/97 (43%)
Query: 488 DKETSVSLDVSETNNYEFGD---PVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLE 544
+KE +S+ FG+ PV + P E SF SEVE +N++ +LL
Sbjct: 216 EKELGISV-AQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEA--KNKIEELLA 272
Query: 545 GNSLVLRQ-EEGSCCDGVEEVDKDITPDNKVGTSSNQ 580
SL+ R ++G V + + + + G S Q
Sbjct: 273 --SLLNRVCQDGRKPHTVRLIIRRYSSEKHYGRESRQ 307
>UNIPROTKB|G5EH81 [details] [associations]
symbol:MGCH7_ch7g688 "Sister chromatid cohesion protein
Eso1" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0003684 GO:GO:0006281 EMBL:CM000230 EMBL:CM001237
GO:GO:0003887 Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509
InterPro:IPR017061 PIRSF:PIRSF036603 RefSeq:XP_003720794.1
EnsemblFungi:MGG_02924T0 GeneID:2682477 KEGG:mgr:MGG_02924
Uniprot:G5EH81
Length = 668
Score = 132 (51.5 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 40/135 (29%), Positives = 68/135 (50%)
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
EI ++R +++ TCSAGVA N+LL+K+ S KPN Q V+ AV F+S
Sbjct: 248 EITRDIRQTIFTRLKYTCSAGVAGNKLLSKLGSAHKKPNQQTVIRG--RAVRKFLSDFKF 305
Query: 281 RKIGGIG-KVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNT 337
KI +G K+ + ++ FG + ++L+ L + STA + + G+ ++
Sbjct: 306 TKIRNLGGKLGDQVVA-AFGTESVSDLLEVPLDQLKLRLGEESTALWVYNTIRGIDNSEV 364
Query: 338 PQARFRKSISSERTF 352
KS+ S ++F
Sbjct: 365 NSRTQIKSMLSAKSF 379
Score = 108 (43.1 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 109 HVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
H+D+DAFYA E + + +P+AV + NY AR+FG+ A KLCPEL
Sbjct: 52 HIDLDAFYAQCEMVRLGVDEDRPLAVQQWQGLIAVNYPARKFGISRHCAIDDALKLCPEL 111
Score = 65 (27.9 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 605 EERQEHSDFHLAERLQKEESGSDLRILTHRE 635
EE Q+H D+HLA+ LQ EE T R+
Sbjct: 603 EELQDHLDWHLAKDLQDEEERGASAFATRRQ 633
>UNIPROTKB|F1RRJ6 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010225 "response to UV-C" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 KO:K03509 CTD:5429
OMA:SPPLTML InterPro:IPR017061 PIRSF:PIRSF036603
GeneTree:ENSGT00530000062942 EMBL:CR974460 RefSeq:XP_003356678.1
UniGene:Ssc.83954 Ensembl:ENSSSCT00000001879 GeneID:100153104
KEGG:ssc:100153104 Uniprot:F1RRJ6
Length = 698
Score = 178 (67.7 bits), Expect = 4.9e-13, Sum P(3) = 4.9e-13
Identities = 53/158 (33%), Positives = 76/158 (48%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAVGTMSM-----ICTANYEARRFGVRAAMPGFIARKL 164
+DMD F+ VE NP LK KP AV I + +YEAR FGV +M A+KL
Sbjct: 12 LDMDCFFVQVEQRQNPHLKNKPCAVVQYKSWKGGGIVSVSYEARAFGVTKSMWADDAKKL 71
Query: 165 CPELIFVPT-------DFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER-- 215
CP+L+ + TKY S +V ++ AS+DEA++D+T RER
Sbjct: 72 CPDLLLAQVLESRGKANLTKYREASAEVMEVMSRF-AMIERASIDEAFVDLTSAVRERLQ 130
Query: 216 GISGIEIAEELRTSVYEEA---GLTCSAGVAPNRLLAK 250
+ G ++ +L + Y E GLT + G + K
Sbjct: 131 KLQGQPVSADLLPTTYIEGFPQGLTTAEGTVEKEEMRK 168
Score = 133 (51.9 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 45/166 (27%), Positives = 82/166 (49%)
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
G I EE+R ++ + GL CSAG++ N++LAK+ ++KPN Q ++ +V S +
Sbjct: 193 GAVIVEEMRAAIERQTGLQCSAGISHNKVLAKLACALHKPNRQTLVSLG--SVPQVFSQM 250
Query: 279 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTN 336
PI K+ +G K+ I+ ++ GI E+ Q S L + F + ++ G+
Sbjct: 251 PISKVRHLGGKLGASII-EILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHEP 309
Query: 337 TPQARFRKSISSERTFS-----VTEDKALLYR-KLA-EIAEMLSAD 375
+ K++ + F VT ++ + +LA E+ E L+ D
Sbjct: 310 VRPRQVTKTLGCGKNFPGKTALVTREQVQWWLLQLAQELEERLTKD 355
Score = 77 (32.2 bits), Expect = 4.9e-13, Sum P(3) = 4.9e-13
Identities = 21/70 (30%), Positives = 31/70 (44%)
Query: 588 DDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKE----ESGSDLRILTHRERCVRTQRD 643
D C CG+ +P + E EHSD+H A LQK S + + + R +
Sbjct: 616 DQVLCEKCGSLVP---VWETPEHSDYHFALELQKSFLQPHSSTSQAVPARSPQSKRNPKS 672
Query: 644 HIASHRKRKK 653
+AS KR +
Sbjct: 673 PLASSHKRPR 682
Score = 43 (20.2 bits), Expect = 4.9e-13, Sum P(3) = 4.9e-13
Identities = 16/69 (23%), Positives = 27/69 (39%)
Query: 449 SDPTQKTLTNFMTSGHASKKIVGDQNSL---GSDINDDCLIDDKETSVSLDVSETNNYEF 505
+ P++ +L F TS + Q +L +ND + + S Y
Sbjct: 509 NSPSKPSLP-FQTSSTTGSEPFFKQKTLLLKQKQLNDPSVFFPPQKPQSSPKELPTEYPD 567
Query: 506 GDPVCDNSL 514
G P C+N+L
Sbjct: 568 GGPACENAL 576
>UNIPROTKB|I3LUT8 [details] [associations]
symbol:LOC100737500 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006281 "DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 GeneTree:ENSGT00530000062942
EMBL:CU928880 Ensembl:ENSSSCT00000029503 OMA:FRRSEAK Uniprot:I3LUT8
Length = 191
Score = 180 (68.4 bits), Expect = 7.8e-13, P = 7.8e-13
Identities = 55/161 (34%), Positives = 78/161 (48%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAVGTMSM-----ICTANYEARRFGVRAAMPGFIARKL 164
+DMD F+ VE NP LK KP AV I + +YEAR FGV +M A+KL
Sbjct: 12 LDMDCFFVQVEQRQNPHLKNKPCAVVQYKSWKGGGIVSVSYEARAFGVTKSMWADDAKKL 71
Query: 165 CPELIFVPT-------DFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER-- 215
CP+L+ + TKY S +V ++ AS+DEA++D+T RER
Sbjct: 72 CPDLLLAQVLESRGKANLTKYREASAEVMEVMSRF-AMIERASIDEAFVDLTNAVRERLQ 130
Query: 216 GISGIEIAEELRTSVYEEA---GLTCSAG-VAPNRLLAKVC 252
+ G ++ +L + Y E GLT + G V +A C
Sbjct: 131 KLQGQPVSADLLPTTYIEGFPQGLTTAEGTVEKGTSIASYC 171
>ASPGD|ASPL0000030996 [details] [associations]
symbol:AN5620 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] InterPro:IPR001126 InterPro:IPR003583
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SMART:SM00278 GO:GO:0003684 GO:GO:0006281
EMBL:AACD01000098 EMBL:BN001305 GO:GO:0003887 eggNOG:COG0389
Gene3D:3.30.1490.100 KO:K03510 RefSeq:XP_663224.1
EnsemblFungi:CADANIAT00003450 GeneID:2871907 KEGG:ani:AN5620.2
HOGENOM:HOG000191154 OMA:EAKQICP OrthoDB:EOG41CB4X Uniprot:Q5B1G0
Length = 573
Score = 147 (56.8 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 37/114 (32%), Positives = 58/114 (50%)
Query: 101 RDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFI 160
R+ R LH D D FYA+V P LK P+AV ++ T NYEARR G+R
Sbjct: 7 RNDERIILHFDYDCFYASVFEAEQPILKTLPLAVQQKQIVVTCNYEARRRGLRKLQLIKE 66
Query: 161 ARKLCPELIFV-PTDFTKYTYYSDLTRKVFCK--YDPNFMAASLDEAYLDITEV 211
A+++CP+++ + D TK+ S F + + DE ++D+T++
Sbjct: 67 AKQICPDVVIILGEDLTKFRDASKDLYLFFRRSIWGERVERLGFDEIFMDVTDM 120
Score = 100 (40.3 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 226 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLP-----ND-RMAVMTFISSL 278
LR+ + + G T +AG++ ++LLAKV +KPN Q +LP D V+ F+ S
Sbjct: 191 LRSQLENQKGYTATAGISTSKLLAKVVGSAHKPNNQTTLLPPYSSTGDCESNVLRFLDSR 250
Query: 279 PIRKIGGIG-KVTEHILRDV 297
IR I GIG K++ ++ +
Sbjct: 251 EIRAIPGIGSKLSRKLISHI 270
>WB|WBGene00018721 [details] [associations]
symbol:polh-1 species:6239 "Caenorhabditis elegans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03509 InterPro:IPR017061 PIRSF:PIRSF036603
GeneTree:ENSGT00530000062942 EMBL:FO080224 EMBL:AB244413 PIR:A88395
RefSeq:NP_497480.2 UniGene:Cel.10441 ProteinModelPortal:G5EFY1
SMR:G5EFY1 EnsemblMetazoa:F53A3.2 GeneID:175337
KEGG:cel:CELE_F53A3.2 CTD:175337 WormBase:F53A3.2 OMA:GVGNNKM
NextBio:887718 Uniprot:G5EFY1
Length = 584
Score = 122 (48.0 bits), Expect = 5.0e-12, Sum P(3) = 5.0e-12
Identities = 30/83 (36%), Positives = 42/83 (50%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAV------GTMSMICTANYEARRFGVRAAMPGFIARK 163
+DMD FYA VE NPSL G+P+ V G I +YEAR FGV+ M A+
Sbjct: 8 IDMDCFYAQVEQRDNPSLWGQPVIVVQHSRQGIEGGILAVSYEARPFGVKRGMTVAEAKL 67
Query: 164 LCPELIFVPTDFTKYTYYSDLTR 186
CP++ +Y +D+ +
Sbjct: 68 KCPQISICHVPIGEYVDKADIQK 90
Score = 112 (44.5 bits), Expect = 5.0e-12, Sum P(3) = 5.0e-12
Identities = 46/182 (25%), Positives = 80/182 (43%)
Query: 205 YLDITEVCRERG---ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ 261
Y++ C E I+ + + E++R ++EE CSAGV N+++AK+ +KP Q
Sbjct: 176 YIENARNCTENLLLLIAAVTV-EQIRQQIHEETQFFCSAGVGNNKMMAKLVCARHKPRQQ 234
Query: 262 FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHS 320
++P V + PI + G G + ++++ I E+L+ S L F +
Sbjct: 235 TLIP--WFYVREILRLTPIGDVRGFGGKMGNRIQEMLNITLMGELLEVDISQLIETFPNQ 292
Query: 321 TADFFLSVGLGLGSTNTPQARFRKSISSERTF-------SVTEDKALLYRKLAEIAEMLS 373
++ SV G + SI+ + F SV E K L E+A+ L+
Sbjct: 293 H-EYLRSVAEGHCDEPVRPRKESSSIAVSKNFPGKLSIRSVLELKKWLDGLTKELAKRLA 351
Query: 374 AD 375
D
Sbjct: 352 TD 353
Score = 87 (35.7 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 28/87 (32%), Positives = 41/87 (47%)
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIF--VP-------TDFTKYTYYSDLTRKVFC 190
I +YEAR FGV+ M A+ CP++ VP D KY S +V
Sbjct: 44 ILAVSYEARPFGVKRGMTVAEAKLKCPQISICHVPIGEYVDKADIQKYRDASAEVFRVLN 103
Query: 191 KYDPNFMA--ASLDEAYLDITEVCRER 215
YD + AS+DEA+LD++ ++
Sbjct: 104 NYDSQIIIEKASVDEAFLDLSAYTNQK 130
Score = 55 (24.4 bits), Expect = 5.0e-12, Sum P(3) = 5.0e-12
Identities = 18/74 (24%), Positives = 32/74 (43%)
Query: 582 DQFIWLDDYKCS-LCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRT 640
D +I++D K S + +PP + Q A L+ + GS R H + +
Sbjct: 510 DNWIFVDGKKFSKMAWRHLPPDIKKHYQHRIALEEARALKSKTGGSRKRAGAHTDNAQKP 569
Query: 641 QRDH-IASHRKRKK 653
++ + S K+KK
Sbjct: 570 KKPKSLESFFKKKK 583
>FB|FBgn0037141 [details] [associations]
symbol:DNApol-eta "DNApol-eta" species:7227 "Drosophila
melanogaster" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP;IDA;NAS] [GO:0019985 "translesion synthesis"
evidence=ISS;NAS;IDA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0000724 GO:GO:0003887
GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
HSSP:P96022 InterPro:IPR017061 PIRSF:PIRSF036603 EMBL:AY058771
EMBL:AB049433 EMBL:AB036766 IntAct:Q9GNC0 STRING:Q9GNC0
FlyBase:FBgn0037141 InParanoid:Q9GNC0 OrthoDB:EOG4XPNX1
Uniprot:Q9GNC0
Length = 885
Score = 177 (67.4 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 56/207 (27%), Positives = 100/207 (48%)
Query: 180 YYSDLTRKVFCKY-DPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTC 238
Y + +T + Y D S D+ L R + G +A E+R +V +E G C
Sbjct: 168 YVNKITNRFANPYMDDERYQMSYDQNDLPAVRQSDIRLLIGASVAGEVRAAVKKETGYEC 227
Query: 239 SAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVF 298
SAG+A N++LAK+ + +NKPN Q +LP A + SLP+ KI G+G ++ +
Sbjct: 228 SAGIAHNKILAKLAAGMNKPNKQTILPLTETA--SLFDSLPVGKIKGLGGKFGEVVCETL 285
Query: 299 GINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLG-STNTPQARFRKSISSERTF---- 352
GI ++++ + L F + ++ G+ TP+ + KSI + F
Sbjct: 286 GIKFMGQVVKFSEVDLQRKFDEKNGTWLFNISRGIDLEAVTPRF-YSKSIGCCKKFPGRN 344
Query: 353 SVTEDKALLYRKLAEIAEMLSADMQKE 379
++T K L + L E++ ++ ++K+
Sbjct: 345 NITGLKTLQHW-LGELSSEINDRLEKD 370
Score = 151 (58.2 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 44/120 (36%), Positives = 57/120 (47%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM-----ICTANYEARRFGVRAAMPGFIAR 162
L VDMD F+ VE +P + +P+AV + I NY AR GV M G A+
Sbjct: 19 LLVDMDCFFCQVEEKQHPEYRNRPLAVVQYNPWRGGGIIAVNYAARAKGVTRHMRGDEAK 78
Query: 163 KLCPELIF--VPT-----DFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 215
LCPE++ VP D +KY V ++ AS+DEAYLDITE R
Sbjct: 79 DLCPEIVLCQVPNIREKADTSKYRDAGKEVANVLQRFTQLLERASVDEAYLDITETVNHR 138
Score = 69 (29.3 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 602 SFIE--ERQEHSDFHLAERLQKEESGSDLRILT---HRERCVRTQRDHIASHRKRKKQKL 656
+FI+ + EH D+H+A+ LQ+E + DLR T ++E+ Q S +K
Sbjct: 810 AFIKCVDMPEHLDYHVAKNLQRELNQQDLRTRTAALNKEKTSPVQPKK-QSQKKLNSTIS 868
Query: 657 FEKEGTHIPIDMFFAKRN 674
GT I FF++ N
Sbjct: 869 ASSSGTKT-IAQFFSQSN 885
Score = 67 (28.6 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 19/69 (27%), Positives = 28/69 (40%)
Query: 587 LDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIA 646
L KC CG +P ++ Q H D H A+ L + LR ER Q+ +
Sbjct: 703 LPTIKCDQCGANIPDE-VKSLQTHRDHHFAQELSRT-----LRSTEREERTQSRQKISLK 756
Query: 647 SHRKRKKQK 655
+K +K
Sbjct: 757 PTPPKKSKK 765
>UNIPROTKB|F1S1Z7 [details] [associations]
symbol:POLI "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GeneTree:ENSGT00530000062942
OMA:VFYELPE EMBL:CU464155 Ensembl:ENSSSCT00000005003 Uniprot:F1S1Z7
Length = 737
Score = 189 (71.6 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 41/87 (47%), Positives = 54/87 (62%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARK 163
SR +HVD+D FYA VE +SNP LKGKP+ V + T NYEAR+FGV+ M A++
Sbjct: 62 SRVIVHVDLDCFYAQVEMISNPELKGKPLGVQQKYHVVTCNYEARKFGVKKLMKVRDAKE 121
Query: 164 LCPELIFVP-TDFTKY--TYYSDLTRK 187
CP+L+ V D T+Y T Y R+
Sbjct: 122 KCPQLVLVNGEDLTRYRETSYKVTDRR 148
Score = 52 (23.4 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 488 DKETSVSLDVSETNNYEFGD---PVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLL 543
+KE +S+ FG+ PV + P E SF SEVE +N++ +LL
Sbjct: 293 EKELGISV-AQRIQKLSFGEDNSPVTPSGPPQSFSEEDSFKKCSSEVEA--KNKIEELL 348
Score = 49 (22.3 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 408 ISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRA-PSDPTQ 453
ISS D+ +S +L+ EL +S+ ++ F ED PS P Q
Sbjct: 278 ISSVRDLQTFSSKILEKELGISVAQ-RIQKLSFGEDNSPVTPSGPPQ 323
Score = 44 (20.5 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 25/88 (28%), Positives = 33/88 (37%)
Query: 577 SSNQKDQFIWLD----DYKCSLCGTEMPPSFIEERQEH-SDFHLAERLQKEESGSDLRIL 631
SS+QKD +LD D + S E + S FH LQ E+ S
Sbjct: 613 SSSQKDYSHYLDSSLKDERMSQGPKESQGFYFSNTNPAVSIFHSFPNLQNEQLYSKNCSR 672
Query: 632 THRERCVRTQRDHIASHRKRKKQKLFEK 659
E+ V T H R++ L EK
Sbjct: 673 DSHEQPVATVSHHEGLTENREQDSLDEK 700
Score = 42 (19.8 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 413 DIL-KHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 471
DIL K ++ ++P L L L V N ++AP+ + T+ ++T ++ G
Sbjct: 408 DILMKLFRNMVNVKMPFHLTL--LSVCFCN---LKAPNTAKKGTIDYYLTPSLSTTSCSG 462
Query: 472 DQNSLGSDINDDCLIDDKETS 492
++ D + + DKET+
Sbjct: 463 KRSFKMKDTHMEDFSKDKETN 483
>UNIPROTKB|P04152 [details] [associations]
symbol:umuC species:83333 "Escherichia coli K-12"
[GO:0016021 "integral to membrane" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006974 "response to DNA damage
stimulus" evidence=IEP] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IMP] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0009432 "SOS response" evidence=IEA]
HAMAP:MF_01113 InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0016021 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003684 GO:GO:0000012 GO:GO:0009432
GO:GO:0003887 eggNOG:COG0389 Gene3D:3.30.1490.100
InterPro:IPR024728 Pfam:PF11798 SUPFAM:SSF100879 InterPro:IPR025188
Pfam:PF13438 EMBL:M10107 EMBL:M13387 PIR:E64864 RefSeq:NP_415702.1
RefSeq:YP_489451.1 ProteinModelPortal:P04152 SMR:P04152
DIP:DIP-11090N IntAct:P04152 PRIDE:P04152
EnsemblBacteria:EBESCT00000002958 EnsemblBacteria:EBESCT00000014512
GeneID:12932822 GeneID:946359 KEGG:ecj:Y75_p1156 KEGG:eco:b1184
PATRIC:32117614 EchoBASE:EB1049 EcoGene:EG11056
HOGENOM:HOG000252172 KO:K03502 OMA:SPRYTTQ ProtClustDB:PRK03609
BioCyc:EcoCyc:EG11056-MONOMER BioCyc:ECOL316407:JW1173-MONOMER
BioCyc:MetaCyc:EG11056-MONOMER Genevestigator:P04152 Uniprot:P04152
Length = 422
Score = 189 (71.6 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 61/204 (29%), Positives = 98/204 (48%)
Query: 111 DMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA--NYEARRFGVRAAMPGFIARKL---C 165
D++AFYA+ ET+ P L GKP+ V + + C N EA+ GV+ P F + L C
Sbjct: 6 DVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRRC 65
Query: 166 PELIFVPTDFTKYTYYSDLTRKVFCKYD---PNFMAASLDEAYLDITEVCRERGISGIEI 222
+ F + Y Y+D++ +V + P S+DEA+ D+T V R ++ +
Sbjct: 66 GVVCFS----SNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT--DF 119
Query: 223 AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP----NGQFVLPNDRMAVMTFISSL 278
E+R +V + LT G+A + LAK+ + K G V ++ +S+L
Sbjct: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179
Query: 279 PIRKIGGIGKVTEHILRDVFGINT 302
P+ + GIG+ L D GI T
Sbjct: 180 PVDDVWGIGRRISKKL-DAMGIKT 202
>UNIPROTKB|J3QR36 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI Ensembl:ENST00000577612 Uniprot:J3QR36
Length = 195
Score = 118 (46.6 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 31/104 (29%), Positives = 52/104 (50%)
Query: 113 DAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVP 172
DA A+E L++ V ++ T NYEAR+ GV+ M A++ CP+L+ V
Sbjct: 19 DAEAWAME-LADVGAAASSQGVQQKYLVVTCNYEARKLGVKKLMNVRDAKEKCPQLVLVN 77
Query: 173 -TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 215
D T+Y S ++ ++ P DE ++D+TE+ +R
Sbjct: 78 GEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKR 121
Score = 100 (40.3 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 206 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
+++ +V R + G +IA E+R ++Y + GLT AGVA N+LLAK+ S +
Sbjct: 145 INLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGV 194
>POMBASE|SPBC16A3.11 [details] [associations]
symbol:eso1 "sister chromatid cohesion protein/DNA
polymerase eta Eso1 fusion protein" species:4896
"Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006473
"protein acetylation" evidence=IC] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016407 "acetyltransferase activity"
evidence=ISS] [GO:0019985 "translesion synthesis" evidence=IMP]
[GO:0034087 "establishment of mitotic sister chromatid cohesion"
evidence=IMP] [GO:0034182 "regulation of maintenance of mitotic
sister chromatid cohesion" evidence=TAS] [GO:0043596 "nuclear
replication fork" evidence=IC] InterPro:IPR001126
InterPro:IPR015880 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 SMART:SM00355
PomBase:SPBC16A3.11 GO:GO:0046872 GO:GO:0003684 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0000790 GO:GO:0043596
GO:GO:0016746 GO:GO:0034087 GO:GO:0006473 GO:GO:0003887
GO:GO:0019985 eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
KO:K03509 EMBL:AB039861 PIR:T39541 RefSeq:NP_596778.1
ProteinModelPortal:O42917 IntAct:O42917 STRING:O42917
EnsemblFungi:SPBC16A3.11.1 GeneID:2539666 KEGG:spo:SPBC16A3.11
OrthoDB:EOG4M0J8V NextBio:20800820 GO:GO:0034182 Uniprot:O42917
Length = 872
Score = 130 (50.8 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 41/142 (28%), Positives = 74/142 (52%)
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+I +E+R +Y + TCSAGV+ N +L+K+ S NKPN Q +L + A+ ++ SL I
Sbjct: 221 KIVKEIRDDIYLQLKYTCSAGVSFNPMLSKLVSSRNKPNKQTILTKN--AIQDYLVSLKI 278
Query: 281 RKIGGIG-KVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTN-T 337
I +G K E I+ ++ G ++ +++ L + ++ G+ +T T
Sbjct: 279 TDIRMLGGKFGEEII-NLLGTDSIKDVWNMSMDFLIDKLGQTNGPLVWNLCHGIDNTEIT 337
Query: 338 PQARFRKSISSERTFSVTEDKA 359
Q + KS+ S + FS + K+
Sbjct: 338 TQVQI-KSMLSAKNFSQQKVKS 358
Score = 93 (37.8 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 29/94 (30%), Positives = 39/94 (41%)
Query: 109 HVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
H+D DAFYA VE++ P+AV + NY AR + A+K CPEL
Sbjct: 31 HIDQDAFYAQVESVRLGLDHSVPLAVQQWQGLIAVNYAARAANISRHETVTEAKKKCPEL 90
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLD 202
T K + K +PN+ LD
Sbjct: 91 C---TAHVKTWKAGESEAKYHENPNPNYYKTCLD 121
Score = 63 (27.2 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 588 DDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDL 628
+ Y C C ++ + ER EH D+H+A + ++E ++L
Sbjct: 536 ETYTCEECEQKIT---LSERNEHEDYHIALSISRKERYNNL 573
Score = 45 (20.9 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 166 PELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDIT 209
P + T Y + S + K+ P AS+DE ++++T
Sbjct: 111 PNPNYYKTCLDPYRHESVKILNIIKKHAPVVKKASIDECFIELT 154
Score = 39 (18.8 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 567 DITPDNKVGTS---SNQKDQF--IWLD----DYKCSLCGTEMPPSFIEERQEHSDFH 614
++TP+ K T SN D + LD CS C E + E+ HS FH
Sbjct: 621 NLTPNWKKQTPKAISNSSDNMTQLHLDLANSTVTCSECSMEYNSTSEEDILLHSRFH 677
>UNIPROTKB|Q8E897 [details] [associations]
symbol:rulB "SO_S mutagenesis protein RulB" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 InterPro:IPR024728
Pfam:PF11798 InterPro:IPR025188 Pfam:PF13438 HOGENOM:HOG000252172
KO:K03502 EMBL:AE014300 GenomeReviews:AE014300_GR
RefSeq:NP_720351.1 ProteinModelPortal:Q8E897 DNASU:1172608
GeneID:1172608 KEGG:son:SO_A0012 PATRIC:23529210 OMA:AMMEVIG
ProtClustDB:CLSK2393936 Uniprot:Q8E897
Length = 418
Score = 178 (67.7 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 54/207 (26%), Positives = 100/207 (48%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAV--GTMSMICTANYEARRFGVRAAMPGFIARKLCPE 167
VD ++FY + E + P +GKP+ V M+ AN +A+ G+ +P F R LC +
Sbjct: 5 VDANSFYCSCEQVFRPDWRGKPVVVLSNNDGMVVAANRQAKEAGIPKFVPYFQIRDLCQK 64
Query: 168 LIFVPTDFTKYTYYSDLTRK---VFCKYDPNFMAASLDEAYLDITEVCRERGISGIEI-A 223
+ + Y Y+DL+ K + ++ P S+DE++L T C I+ ++ A
Sbjct: 65 KGVIALS-SNYELYADLSAKMMQIIGRFAPEQYVYSIDESFLSFTR-CYP-AITCLKTQA 121
Query: 224 EELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP----NGQFVLPNDRMAVMTFISSLP 279
+ +R +V++EA L G+ LAK+ + K G V+ ++ + + +P
Sbjct: 122 QAIRRAVWKEARLPVCVGIGSTLTLAKIANHAAKKISGYAGVCVIESEPQR-LAILQQMP 180
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEM 306
+ ++ GIG+ L + GI T ++
Sbjct: 181 VGEVWGIGRRLSAKLT-LMGITTAAQL 206
>TIGR_CMR|SO_A0012 [details] [associations]
symbol:SO_A0012 "SO_S mutagenesis protein, RulB"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0009432 "SOS response"
evidence=ISS] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0003684 GO:GO:0006281 GO:GO:0003887 InterPro:IPR024728
Pfam:PF11798 InterPro:IPR025188 Pfam:PF13438 HOGENOM:HOG000252172
KO:K03502 EMBL:AE014300 GenomeReviews:AE014300_GR
RefSeq:NP_720351.1 ProteinModelPortal:Q8E897 DNASU:1172608
GeneID:1172608 KEGG:son:SO_A0012 PATRIC:23529210 OMA:AMMEVIG
ProtClustDB:CLSK2393936 Uniprot:Q8E897
Length = 418
Score = 178 (67.7 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 54/207 (26%), Positives = 100/207 (48%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAV--GTMSMICTANYEARRFGVRAAMPGFIARKLCPE 167
VD ++FY + E + P +GKP+ V M+ AN +A+ G+ +P F R LC +
Sbjct: 5 VDANSFYCSCEQVFRPDWRGKPVVVLSNNDGMVVAANRQAKEAGIPKFVPYFQIRDLCQK 64
Query: 168 LIFVPTDFTKYTYYSDLTRK---VFCKYDPNFMAASLDEAYLDITEVCRERGISGIEI-A 223
+ + Y Y+DL+ K + ++ P S+DE++L T C I+ ++ A
Sbjct: 65 KGVIALS-SNYELYADLSAKMMQIIGRFAPEQYVYSIDESFLSFTR-CYP-AITCLKTQA 121
Query: 224 EELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP----NGQFVLPNDRMAVMTFISSLP 279
+ +R +V++EA L G+ LAK+ + K G V+ ++ + + +P
Sbjct: 122 QAIRRAVWKEARLPVCVGIGSTLTLAKIANHAAKKISGYAGVCVIESEPQR-LAILQQMP 180
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEM 306
+ ++ GIG+ L + GI T ++
Sbjct: 181 VGEVWGIGRRLSAKLT-LMGITTAAQL 206
>UNIPROTKB|J3KSW2 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 GO:GO:0003887
Gene3D:3.30.1490.100 SUPFAM:SSF100879 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI ProteinModelPortal:J3KSW2 Ensembl:ENST00000579434
Uniprot:J3KSW2
Length = 637
Score = 152 (58.6 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 58/174 (33%), Positives = 87/174 (50%)
Query: 206 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 265
+++ +V R + G +IA E+R ++Y + GLT AGVA N+LLAK+ S + KPN Q VL
Sbjct: 85 INLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLL 144
Query: 266 NDRMAVMTFISSLP-IRKIGGIGKVTEHILRDVFGINTCEEMLQKGS--LLCAVFSHSTA 322
+ + I SL I++I GIG T L + GIN+ + LQ S +L S A
Sbjct: 145 PE--SCQHLIHSLNHIKEIPGIGYKTAKCL-EALGINSVRD-LQTFSPKILEKELGISVA 200
Query: 323 DFFLSVGLGLGSTNTPQARFR--KSISSERTFSVTEDKALLYRKLAEI-AEMLS 373
L G N+P +S S E +F + K+ E+ A +L+
Sbjct: 201 QRIQK--LSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNKIEELLASLLN 252
Score = 74 (31.1 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 161 ARKLCPELIFVP-TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 215
A++ CP+L+ V D T+Y S ++ ++ P DE ++D+TE+ +R
Sbjct: 6 AKEKCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKR 61
>UNIPROTKB|F1NCM3 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006290 "pyrimidine dimer repair" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0010225 "response to
UV-C" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 InterPro:IPR017061
PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942 EMBL:AADN02011866
EMBL:AADN02011865 IPI:IPI00818532 Ensembl:ENSGALT00000038044
ArrayExpress:F1NCM3 Uniprot:F1NCM3
Length = 657
Score = 159 (61.0 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 53/147 (36%), Positives = 70/147 (47%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAVGTMSM-----ICTANYEARRFGVRAAMPGFIARKL 164
VDMD F+ VE +P L+G+P AV + I +YEAR FGV M AR L
Sbjct: 12 VDMDCFFMQVEQRFDPRLRGRPCAVVQYNQWQGGGIIAVSYEARAFGVSRGMWATEARAL 71
Query: 165 CPELIF--VP-----TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
CPEL+ VP D T+Y S +V ++ AS+ + YLD+T RER
Sbjct: 72 CPELLLARVPEARGKADLTRYREASAEVMEVLSRFAA-IERASIFKGYLDLTGSARERXX 130
Query: 218 SGIEIAEELRTSVYEEAGLTCSAGVAP 244
AE L T+ + GL G+ P
Sbjct: 131 X----AELLPTTFVQ--GLPAEPGLQP 151
Score = 144 (55.7 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 37/135 (27%), Positives = 61/135 (45%)
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
G I EE+R +V + G CSAG++ N++LAK+ +NKPN Q L + R F S +
Sbjct: 184 GAVIVEEIRVAVEKATGFRCSAGISHNKMLAKLACGLNKPNRQ-TLVSSRSVPQLF-SQM 241
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNT 337
P+ I +G + D+ G+ E+ + + L F T + + G+
Sbjct: 242 PVSSIRNLGGKLGVAITDILGVEYIGEVTKFSEMELQTHFGDKTGSWLYDLCRGIDDEPV 301
Query: 338 PQARFRKSISSERTF 352
+SI + F
Sbjct: 302 KNRHLPQSIGCSKNF 316
Score = 49 (22.3 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 588 DDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQK 621
D C CG + E EH D+H A LQ+
Sbjct: 596 DQQCCEKCGQYV---LAWELPEHMDYHFAVELQR 626
>UNIPROTKB|F1NAG6 [details] [associations]
symbol:POLH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006290 "pyrimidine dimer repair" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0010225 "response to
UV-C" evidence=IEA] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
GO:GO:0005634 GO:GO:0005737 GO:GO:0003684 GO:GO:0010225
GO:GO:0000731 GO:GO:0006301 GO:GO:0003887 GO:GO:0006290
Gene3D:3.30.1490.100 SUPFAM:SSF100879 OMA:SPPLTML
InterPro:IPR017061 PIRSF:PIRSF036603 GeneTree:ENSGT00530000062942
EMBL:AADN02011866 EMBL:AADN02011865 IPI:IPI00596429
Ensembl:ENSGALT00000016798 ArrayExpress:F1NAG6 Uniprot:F1NAG6
Length = 686
Score = 159 (61.0 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 53/147 (36%), Positives = 70/147 (47%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAVGTMSM-----ICTANYEARRFGVRAAMPGFIARKL 164
VDMD F+ VE +P L+G+P AV + I +YEAR FGV M AR L
Sbjct: 12 VDMDCFFMQVEQRFDPRLRGRPCAVVQYNQWQGGGIIAVSYEARAFGVSRGMWATEARAL 71
Query: 165 CPELIF--VP-----TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
CPEL+ VP D T+Y S +V ++ AS+ + YLD+T RER
Sbjct: 72 CPELLLARVPEARGKADLTRYREASAEVMEVLSRFAA-IERASIFKGYLDLTGSARERXX 130
Query: 218 SGIEIAEELRTSVYEEAGLTCSAGVAP 244
AE L T+ + GL G+ P
Sbjct: 131 X----AELLPTTFVQ--GLPAEPGLQP 151
Score = 144 (55.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 37/135 (27%), Positives = 61/135 (45%)
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
G I EE+R +V + G CSAG++ N++LAK+ +NKPN Q L + R F S +
Sbjct: 184 GAVIVEEIRVAVEKATGFRCSAGISHNKMLAKLACGLNKPNRQ-TLVSSRSVPQLF-SQM 241
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNT 337
P+ I +G + D+ G+ E+ + + L F T + + G+
Sbjct: 242 PVSSIRNLGGKLGVAITDILGVEYIGEVTKFSEMELQTHFGDKTGSWLYDLCRGIDDEPV 301
Query: 338 PQARFRKSISSERTF 352
+SI + F
Sbjct: 302 KNRHLPQSIGCSKNF 316
Score = 49 (22.3 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 588 DDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQK 621
D C CG + E EH D+H A LQ+
Sbjct: 596 DQQCCEKCGQYV---LAWELPEHMDYHFAVELQR 626
>UNIPROTKB|Q81NC2 [details] [associations]
symbol:BAS3053 "ImpB/mucB/samB family protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 KO:K03502 OMA:LWFHANG
RefSeq:NP_845581.1 RefSeq:YP_019924.1 RefSeq:YP_029310.1
ProteinModelPortal:Q81NC2 IntAct:Q81NC2 DNASU:1085004
EnsemblBacteria:EBBACT00000009721 EnsemblBacteria:EBBACT00000013537
EnsemblBacteria:EBBACT00000022229 GeneID:1085004 GeneID:2820058
GeneID:2849965 KEGG:ban:BA_3288 KEGG:bar:GBAA_3288 KEGG:bat:BAS3053
ProtClustDB:CLSK2516929 BioCyc:BANT260799:GJAJ-3115-MONOMER
BioCyc:BANT261594:GJ7F-3218-MONOMER Uniprot:Q81NC2
Length = 421
Score = 149 (57.5 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 61/215 (28%), Positives = 101/215 (46%)
Query: 104 SRSWLHVDMDAFYAAVETLS---NPSLKGKPMAVGTM----SMICTANYEARRFGVRAAM 156
+R L VD+ +FYA+V + +P L K VG M S++ A + GV+
Sbjct: 9 NRIILCVDLRSFYASVSCIKMGLDP-LHTKLAVVGDMNRNGSIVLAATPPLKAMGVKKLA 67
Query: 157 PGF-IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDP--NFMAASLDEAYLDITEVCR 213
+ I R+ +++ V Y S+ K+ +Y P +F S+DE ++DIT+
Sbjct: 68 RLYEIPRQ--KDILIVNPIMGTYIKCSNYITKLALQYVPIEDFHQYSIDEFFMDITDSIH 125
Query: 214 ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN-KPNGQFVLPNDRMAVM 272
+ E A + + +YE + C+ G+APN L++KV DI K N V +
Sbjct: 126 LFARNPNEFALQFKREIYEHTRIECTIGIAPNLLMSKVALDIEAKKNKDGVAYWTYEDIP 185
Query: 273 TFISSL-PIRKIGGIGKVTEHILRDVFGINTCEEM 306
T + S+ P+ K GI TE L GI++ ++
Sbjct: 186 TKLWSIRPLSKFWGISHKTETKLNQK-GIHSIGDL 219
>TIGR_CMR|BA_3288 [details] [associations]
symbol:BA_3288 "impB/mucB/samB family protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0009650 "UV protection"
evidence=ISS] InterPro:IPR001126 InterPro:IPR017961
InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 Gene3D:3.30.1490.100 InterPro:IPR024728
Pfam:PF11798 SUPFAM:SSF100879 HOGENOM:HOG000082710
InterPro:IPR025188 Pfam:PF13438 KO:K03502 OMA:LWFHANG
RefSeq:NP_845581.1 RefSeq:YP_019924.1 RefSeq:YP_029310.1
ProteinModelPortal:Q81NC2 IntAct:Q81NC2 DNASU:1085004
EnsemblBacteria:EBBACT00000009721 EnsemblBacteria:EBBACT00000013537
EnsemblBacteria:EBBACT00000022229 GeneID:1085004 GeneID:2820058
GeneID:2849965 KEGG:ban:BA_3288 KEGG:bar:GBAA_3288 KEGG:bat:BAS3053
ProtClustDB:CLSK2516929 BioCyc:BANT260799:GJAJ-3115-MONOMER
BioCyc:BANT261594:GJ7F-3218-MONOMER Uniprot:Q81NC2
Length = 421
Score = 149 (57.5 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 61/215 (28%), Positives = 101/215 (46%)
Query: 104 SRSWLHVDMDAFYAAVETLS---NPSLKGKPMAVGTM----SMICTANYEARRFGVRAAM 156
+R L VD+ +FYA+V + +P L K VG M S++ A + GV+
Sbjct: 9 NRIILCVDLRSFYASVSCIKMGLDP-LHTKLAVVGDMNRNGSIVLAATPPLKAMGVKKLA 67
Query: 157 PGF-IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDP--NFMAASLDEAYLDITEVCR 213
+ I R+ +++ V Y S+ K+ +Y P +F S+DE ++DIT+
Sbjct: 68 RLYEIPRQ--KDILIVNPIMGTYIKCSNYITKLALQYVPIEDFHQYSIDEFFMDITDSIH 125
Query: 214 ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN-KPNGQFVLPNDRMAVM 272
+ E A + + +YE + C+ G+APN L++KV DI K N V +
Sbjct: 126 LFARNPNEFALQFKREIYEHTRIECTIGIAPNLLMSKVALDIEAKKNKDGVAYWTYEDIP 185
Query: 273 TFISSL-PIRKIGGIGKVTEHILRDVFGINTCEEM 306
T + S+ P+ K GI TE L GI++ ++
Sbjct: 186 TKLWSIRPLSKFWGISHKTETKLNQK-GIHSIGDL 219
>TIGR_CMR|CPS_2682 [details] [associations]
symbol:CPS_2682 "umuC protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0009432 "SOS response" evidence=ISS]
[GO:0009650 "UV protection" evidence=ISS] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003887 eggNOG:COG0389
InterPro:IPR025188 Pfam:PF13438 HOGENOM:HOG000252172 KO:K03502
RefSeq:YP_269396.1 ProteinModelPortal:Q480X3 STRING:Q480X3
DNASU:3518547 GeneID:3518547 KEGG:cps:CPS_2682 PATRIC:21468415
OMA:NYELYAN ProtClustDB:CLSK768091
BioCyc:CPSY167879:GI48-2744-MONOMER Uniprot:Q480X3
Length = 418
Score = 148 (57.2 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 55/212 (25%), Positives = 100/212 (47%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAVGTMS--MICTANYEARRFGVRAAMPGFIARKLCPE 167
VD +FYA+ E + +PS++ KP+ V T + IC ARR G+ +P F + L E
Sbjct: 5 VDAVSFYASAEKVFDPSIRNKPVVVLTNNDGCICAVCPIARRLGIPKFIPYFQVKSLL-E 63
Query: 168 LIFVPTDFTKYTYYSDLTRK---VFCKYDPNFMAASLDEAYL--DITEVCRERGISGIEI 222
V + Y Y+DL+ + V ++ N S+DE++L D E C E
Sbjct: 64 KHGVVVRSSNYELYADLSERMMNVIGRFCDNQYIYSIDESFLYFDHYESCIN---DWHEY 120
Query: 223 AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP----NGQFVLPNDRMAVMTFISSL 278
++R ++++E L G L+K + K NG V+ N ++ + +
Sbjct: 121 GHKIRKAIWKETRLPVGVGFGETATLSKAANHAAKKLSGFNGVAVI-NSAVSRDKILKRM 179
Query: 279 PIRKIGGIG-KVTEHILRDVFGINTCEEMLQK 309
+ ++ GIG K+++ + + GIN ++ ++
Sbjct: 180 AVDEVWGIGRKISKRL--GLEGINNAAQLAEQ 209
>UNIPROTKB|J3KRG0 [details] [associations]
symbol:POLI "DNA polymerase iota" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017963 Pfam:PF00817 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0003887 EMBL:AC093462 HGNC:HGNC:9182
ChiTaRS:POLI Ensembl:ENST00000580880 Uniprot:J3KRG0
Length = 145
Score = 124 (48.7 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 206 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 264
+++ +V R + G +IA E+R ++Y + GLT AGVA N+LLAK+ S + KPN Q VL
Sbjct: 85 INLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVL 143
>TIGR_CMR|CPS_1636 [details] [associations]
symbol:CPS_1636 "umuC protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0009432 "SOS response" evidence=ISS]
[GO:0009650 "UV protection" evidence=ISS] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 GO:GO:0003684 GO:GO:0006281 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003887 eggNOG:COG0389
InterPro:IPR024728 Pfam:PF11798 InterPro:IPR025188 Pfam:PF13438
HOGENOM:HOG000252172 KO:K03502 ProtClustDB:CLSK768091
RefSeq:YP_268374.1 ProteinModelPortal:Q484Z1 STRING:Q484Z1
DNASU:3520318 GeneID:3520318 KEGG:cps:CPS_1636 PATRIC:21466461
OMA:VINCEAS BioCyc:CPSY167879:GI48-1713-MONOMER Uniprot:Q484Z1
Length = 417
Score = 143 (55.4 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 50/188 (26%), Positives = 86/188 (45%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAVGTMS--MICTANYEARRFGVRAAMPGFIARK-LCP 166
VD +FYA E + +PS++ KP+ V T + IC AR+ GV +P F + L
Sbjct: 5 VDAVSFYARAEKVFDPSIRHKPVVVLTNNDGCICAVCPIARQLGVPKFVPYFKVKSFLAK 64
Query: 167 ELIFVPTDFTKYTYYSDLTRK---VFCKYDPNFMAASLDEAYLDITEV-CRERGISGIEI 222
+ V + + Y Y+DL+ + V +Y N S+DE++L C + + E
Sbjct: 65 HGVVVRS--SNYELYADLSERMMNVIARYSDNHYVYSIDESFLHFKNFSCVD---NWHEY 119
Query: 223 AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF---VLPNDRMAVMTFISSLP 279
+R +V+ E L G LAK + +K F + +D+ + +S +
Sbjct: 120 GHVIRKAVWRETRLPVGVGFGATLTLAKAANHASKKLSGFDGVAVIDDKASRKEILSRMS 179
Query: 280 IRKIGGIG 287
+ ++ GIG
Sbjct: 180 LTEVWGIG 187
>CGD|CAL0002818 [details] [associations]
symbol:RAD32 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0070987 "error-free translesion synthesis"
evidence=IEA] [GO:0042276 "error-prone translesion synthesis"
evidence=IEA] [GO:0034087 "establishment of mitotic sister
chromatid cohesion" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 CGD:CAL0002818 GO:GO:0003684 GO:GO:0006281
GO:GO:0003887 EMBL:AACQ01000019 eggNOG:COG0389 Gene3D:3.30.1490.100
SUPFAM:SSF100879 KO:K03509 HOGENOM:HOG000065930 RefSeq:XP_720989.1
ProteinModelPortal:Q5AHD1 STRING:Q5AHD1 GeneID:3637340
KEGG:cal:CaO19.866 Uniprot:Q5AHD1
Length = 640
Score = 121 (47.7 bits), Expect = 2.6e-06, Sum P(4) = 2.6e-06
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 217 ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 276
I G +I E+R ++EE G T SAG+A + +AK+ + KP+ Q ++ N A+ +F++
Sbjct: 249 IIGSQILLEVRKDIFEELGYTTSAGLARTKQVAKLAAGFKKPDAQTIIRNS--AINSFLT 306
Query: 277 SLPIRKIGGIG-KVTEHILRDV 297
+ + + G+G K+ E I+ V
Sbjct: 307 NFELTDVTGMGGKLGESIINKV 328
Score = 68 (29.0 bits), Expect = 2.6e-06, Sum P(4) = 2.6e-06
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELI 169
+D++AF+A VE + P+ + + +Y +R+FG+ + CP +I
Sbjct: 52 IDLNAFFAQVEQIRLNLTDQDPVVCAQWNSVIAVSYASRKFGITRMDTIASCKSKCPNVI 111
Score = 46 (21.3 bits), Expect = 2.6e-06, Sum P(4) = 2.6e-06
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 591 KCSLCGTEMPPSFIEERQEHSDFHLAERLQKE 622
KCS C +++ EH+D+H+A L +
Sbjct: 610 KCSRCKLS-----VDDPVEHNDYHIAMDLSNK 636
Score = 43 (20.2 bits), Expect = 5.1e-06, Sum P(4) = 5.1e-06
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 600 PPSFIEERQEHSDFHLAERLQKEESGSD-LRILTHRERCVR 639
PP ++R ++ + E L+K+ D L L ++C R
Sbjct: 573 PPPAQKKRSKNGQLDIFESLKKKSKPGDFLEELIKTKKCSR 613
Score = 37 (18.1 bits), Expect = 2.6e-06, Sum P(4) = 2.6e-06
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 199 ASLDEAYLDI 208
AS+DE Y+D+
Sbjct: 165 ASVDECYIDL 174
>UNIPROTKB|Q4K7K8 [details] [associations]
symbol:rulB "Ultraviolet light resistance protein RulB"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003684 "damaged
DNA binding" evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006261 "DNA-dependent DNA replication"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR001126 InterPro:IPR017961 InterPro:IPR017963
Pfam:PF00817 Pfam:PF11799 PROSITE:PS50173 GO:GO:0003684
GO:GO:0006281 GO:GO:0006261 EMBL:CP000076 GenomeReviews:CP000076_GR
GO:GO:0003887 eggNOG:COG0389 InterPro:IPR025188 Pfam:PF13438
HOGENOM:HOG000252172 KO:K03502 RefSeq:YP_261775.1
ProteinModelPortal:Q4K7K8 STRING:Q4K7K8 GeneID:3479113
KEGG:pfl:PFL_4692 PATRIC:19878816 OMA:SNYAFYA
ProtClustDB:CLSK838631 BioCyc:PFLU220664:GIX8-4729-MONOMER
Uniprot:Q4K7K8
Length = 423
Score = 138 (53.6 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 51/208 (24%), Positives = 96/208 (46%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA--NYEARRFGVRAAMPGF-IARKLCP 166
+D ++FYA+ E + P L P+ V + + C +Y+A+ V+ P F I RKL
Sbjct: 9 IDCNSFYASCERVFRPDLARVPIVVLSNNDGCVIARSYDAKPH-VKMGEPYFQIKRKL-Q 66
Query: 167 ELIFVPTDFTKYTYYSDLTRKVFCKYD---PNFMAASLDEAYLDITEVCRERGISGIEIA 223
+L V + Y Y D++++V + P S+DEA+ D++ +C +
Sbjct: 67 QLGIVAFS-SNYALYGDMSQRVMSVIESMVPAVEVYSIDEAFADLSGICGPEALG----- 120
Query: 224 EELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP----NGQFVLPNDRMAVMTFISSLP 279
++R V + G+ G+A + LAK+ + K G V D + +
Sbjct: 121 RQIRAQVMRDTGIPVGVGIARTKTLAKLANHTAKRLQTHTGGVVDLCDTFKRDWVLRNTD 180
Query: 280 IRKIGGIGK-VTEHILRDVFGINTCEEM 306
+ ++ G+G+ +T H+ + GI T ++
Sbjct: 181 VAEVWGVGRRMTAHL--ESIGIRTAMDL 206
>SGD|S000002827 [details] [associations]
symbol:RAD30 "DNA polymerase eta, involved in translesion
synthesis during post-rep" species:4932 "Saccharomyces cerevisiae"
[GO:0042276 "error-prone translesion synthesis" evidence=IDA;IMP]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0070987 "error-free translesion synthesis" evidence=IDA]
[GO:0005657 "replication fork" evidence=IPI] InterPro:IPR001126
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PROSITE:PS50173 SGD:S000002827 EMBL:U33007 GO:GO:0005634
GO:GO:0046872 GO:GO:0003684 GO:GO:0006260 EMBL:BK006938 KO:K09043
GO:GO:0005657 GO:GO:0003887 GO:GO:0070987 GO:GO:0042276
eggNOG:COG0389 Gene3D:3.30.1490.100 SUPFAM:SSF100879
RefSeq:NP_010707.3 GeneID:852028 KEGG:sce:YDR419W KO:K03509
OrthoDB:EOG4M0J8V PIR:S69702 RefSeq:NP_010711.3 PDB:1JIH PDB:2R8J
PDB:2R8K PDB:2WTF PDB:2XGP PDB:2XGQ PDB:3MFH PDB:3MFI PDB:3OHA
PDB:3OHB PDBsum:1JIH PDBsum:2R8J PDBsum:2R8K PDBsum:2WTF
PDBsum:2XGP PDBsum:2XGQ PDBsum:3MFH PDBsum:3MFI PDBsum:3OHA
PDBsum:3OHB ProteinModelPortal:Q04049 SMR:Q04049 DIP:DIP-6500N
IntAct:Q04049 MINT:MINT-708283 STRING:Q04049 PaxDb:Q04049
EnsemblFungi:YDR419W GeneID:852033 KEGG:sce:YDR423C CYGD:YDR419w
HOGENOM:HOG000065930 OMA:IPIHTAV EvolutionaryTrace:Q04049
NextBio:970255 Genevestigator:Q04049 GermOnline:YDR419W
Uniprot:Q04049
Length = 632
Score = 82 (33.9 bits), Expect = 2.0e-05, Sum P(4) = 2.0e-05
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 109 HVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
H+DM+AF+A VE + K P+ + I +Y AR++G+ A K C L
Sbjct: 28 HIDMNAFFAQVEQMRCGLSKEDPVVCVQWNSIIAVSYAARKYGISRMDTIQEALKKCSNL 87
Query: 169 IFVPT 173
I + T
Sbjct: 88 IPIHT 92
Score = 81 (33.6 bits), Expect = 2.0e-05, Sum P(4) = 2.0e-05
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
G ++ + +R S+ + G T S G++ + + K+ S+ KP+ Q ++ ND +
Sbjct: 241 GSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKF 300
Query: 279 PIRKIGGIGKVTEHILRDVFGI 300
I +G V L DV +
Sbjct: 301 EITSFWTLGGVLGKELIDVLDL 322
Score = 57 (25.1 bits), Expect = 2.0e-05, Sum P(4) = 2.0e-05
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 602 SFIEER--QEHSDFHLAERLQK-----EESGSDL-----RILTHRERCVRTQRDHIASHR 649
+F +++ QEH+D+HLA +L + EES +L R+L R+R H A+ +
Sbjct: 558 TFTDQKALQEHADYHLALKLSEGLNGAEESSKNLSFGEKRLLFSRKR---PNSQHTATPQ 614
Query: 650 KRK 652
K++
Sbjct: 615 KKQ 617
Score = 46 (21.3 bits), Expect = 2.0e-05, Sum P(4) = 2.0e-05
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 199 ASLDEAYLDITEVC 212
AS+DE +LD+ +C
Sbjct: 152 ASIDEVFLDLGRIC 165
>SGD|S000005873 [details] [associations]
symbol:REV1 "Deoxycytidyl transferase" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0017125 "deoxycytidyl
transferase activity" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA;IDA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0005657 "replication
fork" evidence=IPI] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0070987 "error-free translesion synthesis" evidence=IMP;IDA]
[GO:0042276 "error-prone translesion synthesis"
evidence=IGI;IMP;IDA] InterPro:IPR001126 InterPro:IPR012112
InterPro:IPR017961 InterPro:IPR017963 Pfam:PF00817 Pfam:PF11799
PIRSF:PIRSF036573 PROSITE:PS50173 InterPro:IPR001357 SGD:S000005873
Pfam:PF00533 GO:GO:0005739 GO:GO:0005634 EMBL:BK006948
GO:GO:0000287 GO:GO:0003684 GO:GO:0006260 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0005657 GO:GO:0003887
EMBL:X95720 GO:GO:0070987 GO:GO:0042276 eggNOG:COG0389
Gene3D:3.30.1490.100 SUPFAM:SSF100879 GO:GO:0017125
GeneTree:ENSGT00530000062942 KO:K03515 OMA:FHIDFDC
OrthoDB:EOG49PF6V EMBL:M22222 EMBL:Z75253 PIR:S67255
RefSeq:NP_014991.1 PDB:2AQ4 PDB:2M2I PDB:3BJY PDB:3OSP PDB:4ID3
PDBsum:2AQ4 PDBsum:2M2I PDBsum:3BJY PDBsum:3OSP PDBsum:4ID3
ProteinModelPortal:P12689 SMR:P12689 DIP:DIP-1000N IntAct:P12689
MINT:MINT-2732340 STRING:P12689 PaxDb:P12689 EnsemblFungi:YOR346W
GeneID:854527 KEGG:sce:YOR346W CYGD:YOR346w HOGENOM:HOG000141717
EvolutionaryTrace:P12689 NextBio:976907 Genevestigator:P12689
GermOnline:YOR346W Uniprot:P12689
Length = 985
Score = 131 (51.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 75/329 (22%), Positives = 135/329 (41%)
Query: 63 FIQQKIEHMRARCAKLTSPVIS---H-YQKVADKRILELEATRDLSRSWLHVDMDAFYAA 118
F ++ H+ A A L ++ H Y K+ DK + D + V A+
Sbjct: 320 FAHSRLHHLSAWKANLKDKFLNENIHKYTKITDKDTYIIFHI-DFDCFFATV---AYLCR 375
Query: 119 VETLSNPSLKGKPMAV--GTM-SMICTANYEARRFGVRAAMPGFIARKLCP---ELIFVP 172
+ S K P+ V GT S I + NY AR +G++ M A K+ P +LI +P
Sbjct: 376 SSSFSACDFKRDPIVVCHGTKNSDIASCNYVARSYGIKNGMWVSQAEKMLPNGIKLISLP 435
Query: 173 TDFTKY-----TYYSDLTR-KVFCKYDPNFMAASLDEAYLD--ITEVCRERGISGIEIAE 224
F ++ +YS L R +F P S+DEA I + + E
Sbjct: 436 YTFEQFQLKSEAFYSTLKRLNIFNLILP----ISIDEAVCVRIIPDNIHNTNTLNARLCE 491
Query: 225 ELRTSVYEEA-GLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKI 283
E+R +++ G T S G + + +LA++ + KPNG + ++ F SS + +
Sbjct: 492 EIRQEIFQGTNGCTVSIGCSDSLVLARLALKMAKPNGYNITFKSNLSE-EFWSSFKLDDL 550
Query: 284 GGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-GSTNTPQARF 342
G+G T L F L+K L A+ + + + + L L G + +
Sbjct: 551 PGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVGSKLGMKIHLALQGQDDEESLKI 610
Query: 343 R---KSISSERTFSVTEDKALLYRKLAEI 368
K + ++ S+ + + ++ + ++
Sbjct: 611 LYDPKEVLQRKSLSIDINWGIRFKNITQV 639
Score = 44 (20.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 601 PSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDH 644
P+ I H D + +++Q+ + G+ + RE ++ +++H
Sbjct: 822 PTQIRAEVRH-DLRIQKKIQQTKLGNLQEKIKRREESLQNEKNH 864
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 677 664 0.00098 120 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 105
No. of states in DFA: 619 (66 KB)
Total size of DFA: 348 KB (2175 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 62.02u 0.14s 62.16t Elapsed: 00:00:03
Total cpu time: 62.04u 0.14s 62.18t Elapsed: 00:00:03
Start: Fri May 10 05:19:12 2013 End: Fri May 10 05:19:15 2013
WARNINGS ISSUED: 1