BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005785
(677 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296083048|emb|CBI22452.3| unnamed protein product [Vitis vinifera]
Length = 704
Score = 931 bits (2405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/711 (67%), Positives = 553/711 (77%), Gaps = 41/711 (5%)
Query: 1 MERSDGECASSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERK 60
ME+++ E ++S+++ RPWQSY TVYTNAKAGMDGVDKEKVQ+ VYEMSKGSKYFENEERK
Sbjct: 1 MEKAEAEPSASADSARPWQSYTTVYTNAKAGMDGVDKEKVQRTVYEMSKGSKYFENEERK 60
Query: 61 EAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVE 120
EAFI+QKI++MRARCAKL++ ISHYQ VADKRILELEATRDLSR WLHVDMDAFYAAVE
Sbjct: 61 EAFIRQKIDNMRARCAKLSASDISHYQMVADKRILELEATRDLSRIWLHVDMDAFYAAVE 120
Query: 121 TLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTY 180
TL NPSL+G+PMAVG MSMI TANYEAR+FGVRAAMPGFIARKLCPELIFVPTDF KYTY
Sbjct: 121 TLDNPSLRGRPMAVGGMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTY 180
Query: 181 YSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSA 240
YSDLTRKVF KYDPNFMAASLDEAYLDITEVC ER ++ EIAEELRTSV+E GLTCSA
Sbjct: 181 YSDLTRKVFQKYDPNFMAASLDEAYLDITEVCNERDLTSGEIAEELRTSVHEVTGLTCSA 240
Query: 241 GVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI 300
GVAPNRLLAKVCSDINKPNGQFVLP++RMAVMTFISSLPIRKIGGIGKVTEHIL VFGI
Sbjct: 241 GVAPNRLLAKVCSDINKPNGQFVLPSNRMAVMTFISSLPIRKIGGIGKVTEHILSGVFGI 300
Query: 301 NTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL 360
NTCEEMLQKG LCA+FS S+ADFFLSVGLGLG T+TPQ RFRKSIS+ERTFS T+D AL
Sbjct: 301 NTCEEMLQKGGFLCALFSRSSADFFLSVGLGLGKTDTPQVRFRKSISNERTFSATDDTAL 360
Query: 361 LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV 420
LY+KLAE++EMLS DMQKEGL GRTLTLKLKTASFEVR+RAVT+QKYI S EDIL HA
Sbjct: 361 LYQKLAELSEMLSIDMQKEGLSGRTLTLKLKTASFEVRSRAVTMQKYICSREDILNHALK 420
Query: 421 LLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDI 480
LL AELP+SLRLIGLR++ FNEDK SDPTQKTL NF+ SG AS K V + + LGSD
Sbjct: 421 LLNAELPLSLRLIGLRISHFNEDKDGHLSDPTQKTLANFIISGDASGKNVCEHSLLGSDT 480
Query: 481 NDDCLIDDKETSVSLDVSETNNY-----------------------EFGDPVCDNSLPDL 517
+D + D E +S+D ET +Y G +N LP L
Sbjct: 481 SDSHFMVDPENDLSIDNHETCHYVSEDLLDSNLLSDLDHCNFNLSNNSGKIDNNNELP-L 539
Query: 518 NDE--NCSFSNKISEVEKIHENEVSQLLEGNSLVLRQE-EGSCCDGVEEVDKDITPDNKV 574
N + N + K H+ +VS L+E +S ++ E + D + D+ D+ V
Sbjct: 540 NGSVAKVNAPNVVGCAPKSHQIKVSHLVEADSFSFSEQCESNRPDRARRTNNDL--DDGV 597
Query: 575 GTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRILTHR 634
SSNQK+QF+W++DYKCSLCG E+PP+F+EERQEH DFHLAE+LQKEES + ++ ++
Sbjct: 598 -PSSNQKEQFLWVNDYKCSLCGIELPPNFVEERQEHFDFHLAEKLQKEESDNSRNLMLNQ 656
Query: 635 ERCVRTQRDHIASHRKRKKQ--------KLFEKEGTHIPIDMFFAKRNRNF 677
+QRDH AS R+ K+ K +KE H+PIDMFF K N+NF
Sbjct: 657 R---FSQRDHTASQRRHKRHKSSKKEGSKSSQKESKHLPIDMFFVKSNQNF 704
>gi|225428993|ref|XP_002264518.1| PREDICTED: DNA polymerase kappa-like [Vitis vinifera]
Length = 661
Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/685 (69%), Positives = 542/685 (79%), Gaps = 32/685 (4%)
Query: 1 MERSDGECASSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERK 60
ME+++ E ++S+++ RPWQSY TVYTNAKAGMDGVDKEKVQ+ VYEMSKGSKYFENEERK
Sbjct: 1 MEKAEAEPSASADSARPWQSYTTVYTNAKAGMDGVDKEKVQRTVYEMSKGSKYFENEERK 60
Query: 61 EAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVE 120
EAFI+QKI++MRARCAKL++ ISHYQ VADKRILELEATRDLSR WLHVDMDAFYAAVE
Sbjct: 61 EAFIRQKIDNMRARCAKLSASDISHYQMVADKRILELEATRDLSRIWLHVDMDAFYAAVE 120
Query: 121 TLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTY 180
TL NPSL+G+PMAVG MSMI TANYEAR+FGVRAAMPGFIARKLCPELIFVPTDF KYTY
Sbjct: 121 TLDNPSLRGRPMAVGGMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTY 180
Query: 181 YSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSA 240
YSDLTRKVF KYDPNFMAASLDEAYLDITEVC ER ++ EIAEELRTSV+E GLTCSA
Sbjct: 181 YSDLTRKVFQKYDPNFMAASLDEAYLDITEVCNERDLTSGEIAEELRTSVHEVTGLTCSA 240
Query: 241 GVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI 300
GVAPNRLLAKVCSDINKPNGQFVLP++RMAVMTFISSLPIRKIGGIGKVTEHIL VFGI
Sbjct: 241 GVAPNRLLAKVCSDINKPNGQFVLPSNRMAVMTFISSLPIRKIGGIGKVTEHILSGVFGI 300
Query: 301 NTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL 360
NTCEEMLQKG LCA+FS S+ADFFLSVGLGLG T+TPQ RFRKSIS+ERTFS T+D AL
Sbjct: 301 NTCEEMLQKGGFLCALFSRSSADFFLSVGLGLGKTDTPQVRFRKSISNERTFSATDDTAL 360
Query: 361 LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV 420
LY+KLAE++EMLS DMQKEGL GRTLTLKLKTASFEVR+RAVT+QKYI S EDIL HA
Sbjct: 361 LYQKLAELSEMLSIDMQKEGLSGRTLTLKLKTASFEVRSRAVTMQKYICSREDILNHALK 420
Query: 421 LLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDI 480
LL AELP+SLRLIGLR++ FNEDK SDPTQKTL NF+ SG AS K V + + LGSD
Sbjct: 421 LLNAELPLSLRLIGLRISHFNEDKDGHLSDPTQKTLANFIISGDASGKNVCEHSLLGSDT 480
Query: 481 NDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVS 540
+D + D E +S+D ET +Y D + N L DL+ N + SN +++ +E
Sbjct: 481 SDSHFMVDPENDLSIDNHETCHYVSEDLLDSNLLSDLDHCNFNLSNNSGKIDNNNE---- 536
Query: 541 QLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMP 600
L N V + E D + D+ D+ V SSNQK+QF+W++DYKCSLCG E+P
Sbjct: 537 --LPLNGSVAKCESNR-PDRARRTNNDL--DDGV-PSSNQKEQFLWVNDYKCSLCGIELP 590
Query: 601 PSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQ------ 654
P+F+EERQEH DFHLAE+LQKEES + R+ AS R+ K+
Sbjct: 591 PNFVEERQEHFDFHLAEKLQKEESDN--------------SRNLTASQRRHKRHKSSKKE 636
Query: 655 --KLFEKEGTHIPIDMFFAKRNRNF 677
K +KE H+PIDMFF K N+NF
Sbjct: 637 GSKSSQKESKHLPIDMFFVKSNQNF 661
>gi|449438619|ref|XP_004137085.1| PREDICTED: DNA polymerase kappa-like [Cucumis sativus]
gi|449495765|ref|XP_004159938.1| PREDICTED: DNA polymerase kappa-like [Cucumis sativus]
Length = 693
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/686 (64%), Positives = 537/686 (78%), Gaps = 28/686 (4%)
Query: 16 RPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARC 75
RPWQSYHTVYTNAKAGM+GVDKE+VQ++VYEMSKGSKYFENEERKEA I++KIE+MRARC
Sbjct: 12 RPWQSYHTVYTNAKAGMEGVDKERVQRIVYEMSKGSKYFENEERKEATIREKIENMRARC 71
Query: 76 AKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG 135
A+LT+ +S YQKVADKRILELE+TRDLSR WLHVDMDAFYAAVETLSNP LKGKPMAVG
Sbjct: 72 AQLTATDLSQYQKVADKRILELESTRDLSRIWLHVDMDAFYAAVETLSNPLLKGKPMAVG 131
Query: 136 TMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPN 195
+MSM+ TANYEAR++GVRAAMPGFIAR+LCPELI VPT+F KY YYSDLTRKVF +YDPN
Sbjct: 132 SMSMLSTANYEARKYGVRAAMPGFIARRLCPELILVPTNFDKYNYYSDLTRKVFHRYDPN 191
Query: 196 FMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
F+AASLDEAYLDITEVC+ERG++ EIA++LRTS++EE GLTCSAGVA NRLLAKVCSDI
Sbjct: 192 FLAASLDEAYLDITEVCKERGLTSEEIAKDLRTSIFEETGLTCSAGVAANRLLAKVCSDI 251
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 315
NKPNGQF+LPNDR A++TFISSLPIRKIGGIGKVTEHIL+D GINTCEEMLQKG LCA
Sbjct: 252 NKPNGQFILPNDRRAIVTFISSLPIRKIGGIGKVTEHILKDALGINTCEEMLQKGGHLCA 311
Query: 316 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 375
+FS S+ADFFLSVGLGLGST+TPQ RFRKSIS+ERTF+ T D+ L+++KLA++AEMLS D
Sbjct: 312 LFSQSSADFFLSVGLGLGSTDTPQVRFRKSISNERTFAATTDERLIFQKLADLAEMLSMD 371
Query: 376 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGL 435
M+KEGL GRTLTLKLKTASFEVRTRAVTLQKYI SS DIL+ AS LLKAELPVSLRLIGL
Sbjct: 372 MEKEGLTGRTLTLKLKTASFEVRTRAVTLQKYICSSSDILQQASRLLKAELPVSLRLIGL 431
Query: 436 RVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSL 495
R++QFNED A DPTQ ++T F+TSG A++K GD SL +D N+ +DD E +
Sbjct: 432 RISQFNEDGATAGLDPTQISITRFITSGDATRKSTGDCCSLNTDSNNHGFMDDTEIDTCI 491
Query: 496 DVSETN---NYEFGDPVCDNSLPDLNDENCSFSN---KISEVEKIHEN----------EV 539
D T+ +++ + DN +++D NC+ +N K E E + N +
Sbjct: 492 DGYGTDSETHHQVSNQRIDNKFSNMDDSNCTSTNDAEKSEEPENLLRNASADQANISTAI 551
Query: 540 SQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGT-------SSNQKDQFIWLDDYKC 592
+ + ++R+ + C ++ + P+N V S + Q W+D+YKC
Sbjct: 552 GSTSDSSDALIRRVSSTACSSSRNLEGN--PNNNVDGENQVEVRSPDNNGQIWWIDNYKC 609
Query: 593 SLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRK 652
++CG E+P SF++ERQEH DFH+AE+LQ+EESG +R TH R ++ ++S RK K
Sbjct: 610 TICGAEVPASFVDERQEHIDFHIAEKLQEEESG--IRSRTHMPRQRTADKNLLSSPRKPK 667
Query: 653 KQK-LFEKEGTHIPIDMFFAKRNRNF 677
+QK EKE HIPID+FF K N+ F
Sbjct: 668 RQKSTPEKEVKHIPIDLFFMKTNQKF 693
>gi|356539372|ref|XP_003538172.1| PREDICTED: DNA polymerase kappa-like [Glycine max]
Length = 663
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/671 (67%), Positives = 535/671 (79%), Gaps = 23/671 (3%)
Query: 12 SENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHM 71
+E+ RPWQSYHTVYT AKAGM+ VDKEKVQ+VVYEMSKGSKYF+NEERKEAFI+QKI+++
Sbjct: 7 TEDDRPWQSYHTVYTTAKAGMELVDKEKVQRVVYEMSKGSKYFQNEERKEAFIKQKIDNL 66
Query: 72 RARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKP 131
R +CA LT ++HYQKVAD+RI+ELEA+RDLSR WLHVDMDAFYAAVETLSNP+LKGKP
Sbjct: 67 RIQCANLTQEDLAHYQKVADRRIVELEASRDLSRIWLHVDMDAFYAAVETLSNPTLKGKP 126
Query: 132 MAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCK 191
MAVG+MSM+ TANYEAR+FGVRAAMPGFIARKLCPELIFVPTDF KYTYYSDLTRKVF +
Sbjct: 127 MAVGSMSMLSTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTYYSDLTRKVFGR 186
Query: 192 YDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKV 251
YDPNF+A SLDEAYLDITEVCRER + EIA+ELR VYEE GLTCSAGVAPNRLLAKV
Sbjct: 187 YDPNFIAGSLDEAYLDITEVCRERNVKSEEIAQELRAGVYEETGLTCSAGVAPNRLLAKV 246
Query: 252 CSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS 311
CSDINKPNGQ+VLPNDRMAVMTF+SSLPIRKIGGIGKVTEHIL+ VFGINTCE+ML+K S
Sbjct: 247 CSDINKPNGQYVLPNDRMAVMTFVSSLPIRKIGGIGKVTEHILKGVFGINTCEQMLEKSS 306
Query: 312 LLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM 371
+CA FS STADFF SVGLGLG T++PQ RFRKSISSERTFS T+D+ LL++KL E+AEM
Sbjct: 307 YICAFFSQSTADFFCSVGLGLGQTDSPQVRFRKSISSERTFSATKDEVLLHKKLEELAEM 366
Query: 372 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR 431
LSADMQKEGL GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA LL+AELP+S+R
Sbjct: 367 LSADMQKEGLSGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAKKLLQAELPISVR 426
Query: 432 LIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKET 491
LIGLRV+QFN DK A SDPTQKT+TNF+TSG ++ S D+ D + + ET
Sbjct: 427 LIGLRVSQFNGDKCSAKSDPTQKTITNFITSGDVNRNC-----SSFPDVADHDFVSNAET 481
Query: 492 SVSLDVSETNNYEFGDPVCDNSLPDLNDENCSF--SNKISEVE-------KIHENEVSQL 542
+S+D +T ++ DP N L D++ ++C+ S+ + EV+ H + ++++
Sbjct: 482 DMSIDSRQTGQLDWRDPFDGNYLSDVDYQSCTVQKSDGVEEVQTSSNDATSSHYSGLTEV 541
Query: 543 LEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPS 602
L G++ L Q EG + +D D S Q+ +WL+DYKCSLCG E+PPS
Sbjct: 542 L-GSTSYLGQVEGINVKNGSNLLEDERLD-----SCCQEKTMLWLNDYKCSLCGIELPPS 595
Query: 603 FIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGT 662
F+EER EHSDFHLAE+LQKEES + + + + Q+D + K KKQKL +KEG+
Sbjct: 596 FVEERLEHSDFHLAEKLQKEESSIHQKSVPSQS---KGQKDGVTRQSKSKKQKLSQKEGS 652
Query: 663 HIPIDMFFAKR 673
+ PID FF K+
Sbjct: 653 YTPIDYFFVKK 663
>gi|79362498|ref|NP_175420.3| DNA polymerase kappa subunit [Arabidopsis thaliana]
gi|46394839|gb|AAS91582.1| DNA-directed polymerase kappa [Arabidopsis thaliana]
gi|332194382|gb|AEE32503.1| DNA polymerase kappa subunit [Arabidopsis thaliana]
Length = 671
Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/674 (63%), Positives = 518/674 (76%), Gaps = 14/674 (2%)
Query: 5 DGECASSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFI 64
+GE +S++ + RPW+SY+TV+TNAKAGM+GVDKEKVQ+VVYEMSKGSKYF+NEERKEA +
Sbjct: 3 NGESSSTNNSSRPWESYNTVFTNAKAGMEGVDKEKVQRVVYEMSKGSKYFQNEERKEALM 62
Query: 65 QQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSN 124
+QKIEHMR RCAKL+S +S+YQKV DKRILELEATRDLSR WLHVDMDAFYAAVETLS+
Sbjct: 63 KQKIEHMRDRCAKLSSLDLSNYQKVVDKRILELEATRDLSRIWLHVDMDAFYAAVETLSD 122
Query: 125 PSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDL 184
PS+KGKPMAVG +SMI TANYEAR+FGVRAAMPGFIARKLCP+LIFVP DFTKYT+YSDL
Sbjct: 123 PSIKGKPMAVGGLSMISTANYEARKFGVRAAMPGFIARKLCPDLIFVPVDFTKYTHYSDL 182
Query: 185 TRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAP 244
TRKVF YDP+F+A SLDEAYLDITEVCRERG+SG EIAEELR+SVY E GLTCSAGVA
Sbjct: 183 TRKVFRNYDPHFIAGSLDEAYLDITEVCRERGLSGGEIAEELRSSVYSETGLTCSAGVAA 242
Query: 245 NRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCE 304
NRLLAKVCSDINKPNGQFVL NDR VMTF+S LP+RKIGGIGKVTEHIL+D GI TCE
Sbjct: 243 NRLLAKVCSDINKPNGQFVLQNDRSTVMTFVSFLPVRKIGGIGKVTEHILKDALGIKTCE 302
Query: 305 EMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK 364
EM+QKGSLL A+FS S+ADFFLSVGLGLG TNTPQ R RKSISSERTF+ T D+ LLY K
Sbjct: 303 EMVQKGSLLYALFSQSSADFFLSVGLGLGGTNTPQVRSRKSISSERTFAATGDERLLYSK 362
Query: 365 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA 424
L E+AEMLS DM+KEGL RTLTLKLKTASFE+R+RAV+LQ+Y SS+DILKHA+ LLKA
Sbjct: 363 LDELAEMLSHDMKKEGLTARTLTLKLKTASFEIRSRAVSLQRYTCSSDDILKHATKLLKA 422
Query: 425 ELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKI--VGDQNSLGSDIND 482
ELPVS+RLIGLR++QF E+ +R SDP+Q T+T F+ +S++ + D +S D N
Sbjct: 423 ELPVSVRLIGLRMSQFVEE-IRN-SDPSQGTITKFIVQKDSSRQAQDLDDNDSFDLDANK 480
Query: 483 DCLIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQL 542
+CL +D+ +VS ET++ D V ++ I E + + E Q+
Sbjct: 481 NCLSNDESGNVSFGSHETSSAHLKDVVEYEERSQIDSGKV-----IPNQECMKKEERLQI 535
Query: 543 LEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPS 602
LEG+SL+ + +E C D + + + Q + W+D YKC LCG E+PPS
Sbjct: 536 LEGDSLLKKYKE--CKPDTSHSMNDNSNATEAVSVFPQTEPLYWIDGYKCVLCGIELPPS 593
Query: 603 FIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGT 662
F+EERQEHSDFHLA+RLQ EE+GS + R + ++ + + +K++ +
Sbjct: 594 FVEERQEHSDFHLAQRLQNEETGSSSSTTPSKRRILGKEK---VNSKPKKQKPDQKDSSK 650
Query: 663 HIPIDMFFAKRNRN 676
HIPI FF K N+N
Sbjct: 651 HIPIHAFFTKSNQN 664
>gi|357480655|ref|XP_003610613.1| DNA polymerase IV [Medicago truncatula]
gi|355511948|gb|AES93571.1| DNA polymerase IV [Medicago truncatula]
Length = 706
Score = 822 bits (2124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/645 (64%), Positives = 494/645 (76%), Gaps = 50/645 (7%)
Query: 18 WQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAK 77
WQSY+TVYT+AKAGM+GVDKEKVQ++VYEMSKGSKYF+NEERKE+FI+ K+++MR +
Sbjct: 11 WQSYNTVYTSAKAGMEGVDKEKVQRIVYEMSKGSKYFQNEERKESFIKYKVQNMRLHFSN 70
Query: 78 LTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM 137
LT +SHYQK+ADKRILELEA+RDLSR WLHVDMDAFYAAVETLSNP LKG PMAVG+M
Sbjct: 71 LTHSDLSHYQKIADKRILELEASRDLSRIWLHVDMDAFYAAVETLSNPMLKGMPMAVGSM 130
Query: 138 SMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRK--VFC----- 190
SMI TANYEAR+FGVR+AMPGFIARKLCPELIFVP DF KYT+YSDLTRK +FC
Sbjct: 131 SMISTANYEARKFGVRSAMPGFIARKLCPELIFVPVDFKKYTHYSDLTRKGIIFCVTDFY 190
Query: 191 ---------------------KYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTS 229
+YDPNF+A SLDEAYLDITEVCRER + EIA+E+R
Sbjct: 191 IVVFPLITDGSLKCTCSLVFQRYDPNFIAGSLDEAYLDITEVCRERNVKSEEIAQEIRVG 250
Query: 230 VYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKV 289
V EE GLTCSAGVAPNRLLAKVCSDINKPNGQ+VLPNDR+AVMTFISSLPIRKIGGIGKV
Sbjct: 251 VLEETGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPNDRLAVMTFISSLPIRKIGGIGKV 310
Query: 290 TEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSE 349
TE IL++VFGI+TCE+ML KGS L A+FS STADFF SVGLGLG T++PQ RFRKSIS+E
Sbjct: 311 TERILKEVFGISTCEQMLDKGSYLSALFSQSTADFFYSVGLGLGKTDSPQVRFRKSISNE 370
Query: 350 RTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYIS 409
RTFS +ED+ALL++KLAE+AEMLS DMQKEGL GRTLTLKLKTASFEVR RAVTLQ YI+
Sbjct: 371 RTFSASEDEALLHKKLAELAEMLSTDMQKEGLHGRTLTLKLKTASFEVRNRAVTLQNYIN 430
Query: 410 SSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKI 469
SS+DILKHAS LLKAELPVS+RLIGLRV+QF+ K A DPTQKT+TNF+TSG A++K
Sbjct: 431 SSDDILKHASKLLKAELPVSVRLIGLRVSQFSGQKCGATPDPTQKTITNFITSGEANRK- 489
Query: 470 VGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKIS 529
NS SD+ D + D ET +SLD T + DP + D+N ++ + K +
Sbjct: 490 ----NSSFSDVTDHDFVTDTETDLSLDGRHTGQLDSRDPFDGDHSLDVNYQSSTL-RKTA 544
Query: 530 EVEKIHENE----------VSQLLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSN 579
EK+ ++ +++L G++ + EG + + +D P+ S
Sbjct: 545 GAEKVRTSDNADASSNHSGCTKVLGGSTSFQGKFEGKNVNNGSNLLEDDRPN------SC 598
Query: 580 QKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEES 624
Q+ +WLDDYKCSLCG E+PPSF+EER EHSDFH AE LQKEES
Sbjct: 599 QEMIMLWLDDYKCSLCGAELPPSFVEERLEHSDFHFAELLQKEES 643
>gi|297847332|ref|XP_002891547.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337389|gb|EFH67806.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 636
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/673 (61%), Positives = 497/673 (73%), Gaps = 47/673 (6%)
Query: 5 DGECASSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFI 64
+GE +S++ + RPW+SY+T +TNAKAGM+GVDKEKVQ++VYEMSKGSK+F+NEERKEA +
Sbjct: 3 NGESSSTNNSSRPWESYNTFFTNAKAGMEGVDKEKVQRIVYEMSKGSKFFQNEERKEALM 62
Query: 65 QQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSN 124
+QKIEHMR RCAKL+S +S+Y KV DKRILELEATRDLSR WLHVDMDAFYAAVETLS+
Sbjct: 63 KQKIEHMRDRCAKLSSSDLSNYHKVVDKRILELEATRDLSRIWLHVDMDAFYAAVETLSD 122
Query: 125 PSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDL 184
PSLKGKPMAVG +SMI TANYEAR+FGVRAAMPGFIARKLCP+LIFVP DFTKYT+YSDL
Sbjct: 123 PSLKGKPMAVGGLSMISTANYEARKFGVRAAMPGFIARKLCPDLIFVPVDFTKYTHYSDL 182
Query: 185 TRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAP 244
TRKVF YDP+F+A SLDEAYLDITEVCRERG+SG EIAEELR+SVY E GLTCSAGVA
Sbjct: 183 TRKVFRNYDPHFIAGSLDEAYLDITEVCRERGLSGGEIAEELRSSVYSETGLTCSAGVAA 242
Query: 245 NRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCE 304
NRLLAKVCSDINKPNGQFVL NDR VMTF+SSLP+RKIGGIGKVTEHIL+D GI TCE
Sbjct: 243 NRLLAKVCSDINKPNGQFVLQNDRSTVMTFVSSLPVRKIGGIGKVTEHILKDALGIKTCE 302
Query: 305 EMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK 364
EM+QKG LL A+FS S+ADFFLSVGLGLG T+TPQ R RKSISSERTF+ T D+ LLY K
Sbjct: 303 EMVQKGPLLYALFSQSSADFFLSVGLGLGGTDTPQVRSRKSISSERTFAATGDERLLYSK 362
Query: 365 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA 424
LAEIAEMLS DM+KEGL RTLTLKLKTASFE+R+RAV+LQ+Y SS+DILKHA+ LLKA
Sbjct: 363 LAEIAEMLSHDMKKEGLTARTLTLKLKTASFEIRSRAVSLQRYTCSSDDILKHATKLLKA 422
Query: 425 ELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDC 484
ELPVS+RLIGLR++QF ++R SDP+Q T+T F+ +S++ + D +S D + +C
Sbjct: 423 ELPVSVRLIGLRMSQF-VGEIRN-SDPSQGTITKFIVQKDSSRQDLDDNDSFDLDASKNC 480
Query: 485 LIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLE 544
L +D S+S ET+ D V E E ++
Sbjct: 481 LSND--LSLSFGSHETSYAHLKDVV--------------------------EYEERSQID 512
Query: 545 GNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFI 604
++ QE C K N S+N W+D YKC LCG E+PPSF+
Sbjct: 513 SEKVIPNQE---CV-------KKKKGRNSFSISAN--GPLYWVDGYKCVLCGIELPPSFV 560
Query: 605 EERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGT-H 663
EERQEH + R K ++ DL + H + + + KRKKQK +K+ + H
Sbjct: 561 EERQEHLLIFILLRDFKTKN-LDLVLPQHLQNEGQLTE---KVNSKRKKQKPDQKDSSKH 616
Query: 664 IPIDMFFAKRNRN 676
IPI FF K N+N
Sbjct: 617 IPIHTFFTKSNQN 629
>gi|242038847|ref|XP_002466818.1| hypothetical protein SORBIDRAFT_01g014630 [Sorghum bicolor]
gi|241920672|gb|EER93816.1| hypothetical protein SORBIDRAFT_01g014630 [Sorghum bicolor]
Length = 668
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/674 (59%), Positives = 494/674 (73%), Gaps = 32/674 (4%)
Query: 16 RPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARC 75
RPWQSYHT YTNAKAGM+GVDKEKVQKV+YEMSKGSKYFENE+RKEA +QKIEH+RA+C
Sbjct: 15 RPWQSYHTAYTNAKAGMEGVDKEKVQKVIYEMSKGSKYFENEQRKEAVTKQKIEHLRAQC 74
Query: 76 AKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG 135
A LT ISH+QKVA+K++LELEA+RDLS+ WLH DMDAFYAAVETL NPSLKGKP+AVG
Sbjct: 75 AALTDNDISHFQKVAEKKMLELEASRDLSKIWLHTDMDAFYAAVETLENPSLKGKPLAVG 134
Query: 136 TMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPN 195
+MSMI TA+YEAR+FGVRAAMPGFI KLCP L+FV +F +YT+YS+LTRKVF +YDPN
Sbjct: 135 SMSMIATASYEARKFGVRAAMPGFIGCKLCPGLVFVRPNFERYTHYSELTRKVFQRYDPN 194
Query: 196 FMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
F+A SLDEAYL+IT VC ERGI+G E+A ELR+++Y+E GLTCSAGVAPNR++AKVCSDI
Sbjct: 195 FIATSLDEAYLNITNVCIERGITGEEVATELRSAIYQETGLTCSAGVAPNRMIAKVCSDI 254
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 315
NKPNGQF+LPNDR AV+TF+S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK + LCA
Sbjct: 255 NKPNGQFILPNDREAVLTFVSTLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKAAFLCA 314
Query: 316 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 375
+FS +ADFFLSVGLGLG T TP+ R RKSIS ERTF+ T D +LL+ KL +AE L+ D
Sbjct: 315 LFSEGSADFFLSVGLGLGGTETPEQRQRKSISCERTFAATNDSSLLFEKLDSLAENLTDD 374
Query: 376 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGL 435
+QKEGL+G+TLTLKLKTA FEVRTRAVT + YI+S EDIL +A+ LLKAE+P+SLRL+GL
Sbjct: 375 LQKEGLKGKTLTLKLKTADFEVRTRAVTTRNYINSKEDILVYATKLLKAEMPLSLRLMGL 434
Query: 436 RVTQFNEDKVRAPSDPTQKTLTNFM-------TSGHASKKIV---GDQNSLGSDINDDCL 485
R++Q +++K PS TQKTL F ++I G N S + L
Sbjct: 435 RMSQLHDEK-DDPSTSTQKTLDIFFRSSNGNSNVNGNVQRITNTSGQDNDSISLTTKEYL 493
Query: 486 IDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEG 545
+ D T VS T+ +F L+DE+C + S +E +S+ L G
Sbjct: 494 VPDAGTGVS-----TDQQDFF----------LHDESCFIPEQRSFGNHSNEAVISKPLGG 538
Query: 546 NSL--VLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSF 603
L V + + + + E D I+P K SS++ DQ W+D Y CS+CG E+PP F
Sbjct: 539 TKLDDVSSSAKVAPAEKLNEPDNLISP--KAVASSSKPDQQSWIDGYICSICGFELPPGF 596
Query: 604 IEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTH 663
EER EHSDFHLAE LQ+EE+ R +++ ER +R + +KK K KEG H
Sbjct: 597 EEERLEHSDFHLAETLQQEEAVDGTRHISN-ERLADRERPCSTTPTPKKKLK-SSKEGKH 654
Query: 664 IPIDMFFAKRNRNF 677
IPID FF K N+N
Sbjct: 655 IPIDAFFTKCNKNL 668
>gi|413933667|gb|AFW68218.1| hypothetical protein ZEAMMB73_188779 [Zea mays]
Length = 670
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/676 (58%), Positives = 493/676 (72%), Gaps = 36/676 (5%)
Query: 16 RPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARC 75
RPWQSYHT YTNAKAGM+GVDKEKVQKV+YEMSKGSKYFENE+RKEA +QKIEH+RA+C
Sbjct: 15 RPWQSYHTAYTNAKAGMEGVDKEKVQKVIYEMSKGSKYFENEQRKEAATKQKIEHLRAQC 74
Query: 76 AKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG 135
A LT ISH+QKVADK++LELEA+RDLS+ WLH DMDAFYAAVETL NPSLKGKP+AVG
Sbjct: 75 AVLTDNDISHFQKVADKKMLELEASRDLSKIWLHTDMDAFYAAVETLENPSLKGKPLAVG 134
Query: 136 TMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPN 195
+MSMI TA+YEAR+FGVRAAMPGFI KLCP+L+FVP +F +YT+YS+LTRKVF +YDPN
Sbjct: 135 SMSMIATASYEARKFGVRAAMPGFIGCKLCPDLVFVPPNFERYTHYSELTRKVFQRYDPN 194
Query: 196 FMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
F+A SLDEAYL+IT VC ERGI+G E+A ELR+++++E GLTCSAGVAPNR++AKVCSDI
Sbjct: 195 FIATSLDEAYLNITNVCIERGITGEEVAIELRSAIHQETGLTCSAGVAPNRMIAKVCSDI 254
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 315
NKPNGQF+LPND AV+TF+S+LPIRKIGGIGKVTE +L V GI+TC+EMLQK + LCA
Sbjct: 255 NKPNGQFILPNDWEAVLTFVSTLPIRKIGGIGKVTEQMLHQVLGISTCQEMLQKAAFLCA 314
Query: 316 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 375
+FS S+ADFFLSVGLGLG T TP+ R RKSIS ERTF+ T D +LL++KLA +AE LS D
Sbjct: 315 LFSESSADFFLSVGLGLGGTETPEQRQRKSISCERTFTATNDSSLLFKKLASLAENLSDD 374
Query: 376 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGL 435
+QKEG +G+TLTLKLKTA FEVRTRAVT + YI S EDIL +A+ L+KAE+P+SLRL+GL
Sbjct: 375 LQKEGFKGKTLTLKLKTADFEVRTRAVTTRNYIDSKEDILVYATKLIKAEMPISLRLMGL 434
Query: 436 RVTQFNEDKVRAPSDPTQKTLTNFM-----TSGHASKKIVGDQNSLGSDINDDCLIDDKE 490
R++Q +++K PS TQKTL F S + NS G D ND + KE
Sbjct: 435 RMSQLHDEK-DDPSTSTQKTLDIFFRSSNSNSNGNGTTVQRITNSPGQD-NDSISLTTKE 492
Query: 491 TSVSLDVS---ETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNS 547
++ D T +F L+DE C I E ++ +N+ + + +
Sbjct: 493 EYLAPDAGTSVSTGQQDFF----------LHDEICF----IPEQQRSLDNDTKEAVLSDP 538
Query: 548 L-------VLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMP 600
L V + + ++E D I+P K +SS++ DQ W+D Y CS+CG E+P
Sbjct: 539 LGGTKSDDVSSSAKVTPTKKLDEPDPLISP--KAVSSSSKPDQQSWIDGYICSICGFELP 596
Query: 601 PSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKE 660
P F EER EHSDFHLAE LQ+EE+ R +++ R + +K+ K KE
Sbjct: 597 PGFEEERLEHSDFHLAETLQQEEAVDGTRHISNESWVAERPRSTAPTPKKKLKSS---KE 653
Query: 661 GTHIPIDMFFAKRNRN 676
G HIPID FF K N++
Sbjct: 654 GKHIPIDSFFTKCNKS 669
>gi|326498699|dbj|BAK02335.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 655
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/674 (57%), Positives = 475/674 (70%), Gaps = 45/674 (6%)
Query: 16 RPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARC 75
RPWQSYHT YTNAKAGM+GVD+EKVQKV+YEMSKGSKYFENE++KEA + KIEH+RA+C
Sbjct: 15 RPWQSYHTAYTNAKAGMEGVDREKVQKVIYEMSKGSKYFENEQKKEAITKLKIEHLRAQC 74
Query: 76 AKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG 135
AKLT ISH+QK+A+++ILELEA+RDLS+ WLH DMDAFYAAVETL NPSLK KP+AVG
Sbjct: 75 AKLTDNDISHFQKIAERKILELEASRDLSKIWLHTDMDAFYAAVETLENPSLKEKPLAVG 134
Query: 136 TMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPN 195
MSMI TA+YEAR+FGVRAAMPGFI KLCP L+FV +F +YT+YS L RKVF +YDPN
Sbjct: 135 GMSMIATASYEARKFGVRAAMPGFIGCKLCPNLVFVRPNFERYTHYSGLARKVFQRYDPN 194
Query: 196 FMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
F+A SLDEAYLDITEVC ERGI+G E+A ELR +V++E GLTCSAGVAPNR++AKVCSDI
Sbjct: 195 FLATSLDEAYLDITEVCSERGITGEEVASELRDAVHQETGLTCSAGVAPNRMIAKVCSDI 254
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 315
NKPNGQF+LPNDR AV TF+S+LPIRKIGGIGKVTE +L V GI TC+EMLQK + LCA
Sbjct: 255 NKPNGQFILPNDRDAVTTFVSTLPIRKIGGIGKVTEQMLHQVLGITTCQEMLQKAAFLCA 314
Query: 316 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 375
+FS + DFFLSVGLGLG T TP+ R RKS+S ERTFS T D LL+ KL +AE L+ D
Sbjct: 315 LFSEGSTDFFLSVGLGLGGTETPEHRLRKSMSCERTFSATNDSRLLFEKLDNLAENLADD 374
Query: 376 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGL 435
MQKE L+GRTLTLKLKTA+FEVRTRA T Q YISS EDIL +A LLKAE+P+SLRL+GL
Sbjct: 375 MQKECLKGRTLTLKLKTAAFEVRTRAATAQNYISSKEDILIYAKKLLKAEMPLSLRLMGL 434
Query: 436 RVTQFNEDKVRAPSDPTQKTLTNFM--------TSGHASKKIV----GDQNSLGSDINDD 483
R++ F+ +K + S PTQKTL F T+G + GD + + + D+
Sbjct: 435 RMSHFSGEKDDSTS-PTQKTLDRFFHSSDINSNTNGTNGASCIDVSGGDNDCNDATMKDE 493
Query: 484 CLIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLL 543
C I D E V +D ++ P +S+ + ++E S S K++ +EK +E+ L
Sbjct: 494 CSIHDAEKDVPVDQRPSHEENSSVPEGASSV-NYDNEVASSSWKVTRIEKF--DELGDLT 550
Query: 544 EGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSF 603
+ + G Q W+D Y CS+CG E+PP F
Sbjct: 551 SSKASASSSKHG---------------------------QHFWVDGYICSMCGFELPPCF 583
Query: 604 IEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTH 663
EERQEHSDFHLAE LQ+EE+ L+ +ER + +KK K KEG H
Sbjct: 584 EEERQEHSDFHLAEMLQQEEAVDGTARLS-KERLAERPCSSATTPTPKKKLK-SSKEGKH 641
Query: 664 IPIDMFFAKRNRNF 677
IPID FF K N+N
Sbjct: 642 IPIDSFFLKCNKNL 655
>gi|222625365|gb|EEE59497.1| hypothetical protein OsJ_11733 [Oryza sativa Japonica Group]
Length = 662
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/678 (57%), Positives = 487/678 (71%), Gaps = 43/678 (6%)
Query: 16 RPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARC 75
RPW+SYHT YTNAKAGM+GVDKEKVQKV+YEMSKGSKYFENE+RKEA +QKI+H+RA+C
Sbjct: 12 RPWESYHTAYTNAKAGMEGVDKEKVQKVIYEMSKGSKYFENEQRKEAITKQKIDHLRAQC 71
Query: 76 AKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG 135
AKLT ISH+QKVA+ +ILELEA+RDLS+ WLH DMDAFYA VE L NPSLKGKP+AVG
Sbjct: 72 AKLTDNDISHFQKVAEHKILELEASRDLSKIWLHTDMDAFYATVEILENPSLKGKPLAVG 131
Query: 136 TMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPN 195
+MSMI TA+YEAR+FGVRAAMPGFI KLCPEL+FV +F +YTYYS+LTRKVF +YDPN
Sbjct: 132 SMSMIATASYEARKFGVRAAMPGFIGCKLCPELVFVRPNFERYTYYSELTRKVFQRYDPN 191
Query: 196 FMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
F+A SLDEAYL+IT+VC +RGI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDI
Sbjct: 192 FVATSLDEAYLNITKVCFDRGITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDI 251
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 315
NKPNGQF+LPND+ AV TF+S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK S LCA
Sbjct: 252 NKPNGQFILPNDQEAVTTFVSTLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKASFLCA 311
Query: 316 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 375
+FS S+ADFF+SVGLGLG T TP+ R RKSIS ERTF T+D ++L+ KL +A+ L+ D
Sbjct: 312 LFSESSADFFISVGLGLGGTETPEQRLRKSISCERTFRATDDCSMLFEKLDSLADNLADD 371
Query: 376 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGL 435
MQKE L+GRTLTLKLKTA+FEVRTRAVT Q YI+S EDIL +A LLKAELP+SLRL+GL
Sbjct: 372 MQKECLKGRTLTLKLKTAAFEVRTRAVTTQNYINSKEDILIYARKLLKAELPLSLRLMGL 431
Query: 436 RVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSL 495
R++Q ++K + S TQKTL F + S I + S+G+ D + T V
Sbjct: 432 RMSQLRDEKDDS-STQTQKTLDRFFRTPDNSNVIGANSPSIGNTTGGDNYCTNVMTKV-- 488
Query: 496 DVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEG 555
+Y D + D +L L+++N S +N + N L+
Sbjct: 489 ------DYLEHDSMDDQAL-FLHEKNLFVPEGRSS-----DNYNNDAASSNPLM------ 530
Query: 556 SCCDGV--EEVDKDITPDNKVGT--------------SSNQKDQFIWLDDYKCSLCGTEM 599
CDGV +E+D D + T SS++ DQ W++ Y CS+CG E+
Sbjct: 531 --CDGVGGKELDDDSSSSKGTHTVKFDGQLTSSNATTSSSKPDQLFWINGYICSICGFEL 588
Query: 600 PPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEK 659
PP F EERQEHSDFHLAE LQ+EE+ L+ +ER + +K+ K K
Sbjct: 589 PPGFEEERQEHSDFHLAEMLQQEEAVDSTGPLS-KERLAERPCSSTPTPKKKLKS---SK 644
Query: 660 EGTHIPIDMFFAKRNRNF 677
EG HIPID FF K N+N
Sbjct: 645 EGKHIPIDAFFHKVNKNL 662
>gi|125544869|gb|EAY91008.1| hypothetical protein OsI_12613 [Oryza sativa Indica Group]
Length = 1626
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/673 (57%), Positives = 484/673 (71%), Gaps = 43/673 (6%)
Query: 16 RPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARC 75
RPW+SYHT YTNAKAGM+GVDKEKVQKV+YEMSKGSKYFENE+RKEA +QKI+H+RA+C
Sbjct: 12 RPWESYHTAYTNAKAGMEGVDKEKVQKVIYEMSKGSKYFENEQRKEAITKQKIDHLRAQC 71
Query: 76 AKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG 135
AKLT ISH+QKVA+ +ILELEA+RDLS+ WLH DMDAFYA VE L NPSLKGKP+AVG
Sbjct: 72 AKLTDNDISHFQKVAEHKILELEASRDLSKIWLHTDMDAFYATVEILENPSLKGKPLAVG 131
Query: 136 TMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPN 195
+MSMI TA+YEAR+FGVRAAMPGFI KLCPEL+FV +F +YTYYS+LTRKVF +YDPN
Sbjct: 132 SMSMIATASYEARKFGVRAAMPGFIGCKLCPELVFVRPNFERYTYYSELTRKVFQRYDPN 191
Query: 196 FMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
F+A SLDEAYL+IT+VC +RGI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDI
Sbjct: 192 FVATSLDEAYLNITKVCFDRGITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDI 251
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 315
NKPNGQF+LPND+ AV TF+S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK S LCA
Sbjct: 252 NKPNGQFILPNDQEAVTTFVSTLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKASFLCA 311
Query: 316 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 375
+FS S+ADFF+SVGLGLG T TP+ R RKSIS ERTF T+D ++L+ KL +A+ L+ D
Sbjct: 312 LFSESSADFFISVGLGLGGTETPEQRLRKSISCERTFRATDDCSMLFEKLDSLADNLADD 371
Query: 376 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGL 435
MQKE L+GRTLTLKLKTA+FEVRTRAVT Q YI+S EDIL +A LLKAELP+SLRL+GL
Sbjct: 372 MQKECLKGRTLTLKLKTAAFEVRTRAVTTQNYINSKEDILIYARKLLKAELPLSLRLMGL 431
Query: 436 RVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSL 495
R++Q ++K + S TQKTL F + S I + S+G+ D + T V
Sbjct: 432 RMSQLRDEKDDS-STQTQKTLDRFFRTPDNSNVIGANSPSIGNTTGGDNYCTNVMTKV-- 488
Query: 496 DVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEG 555
+Y D + D +L L+++N S +N + N L+
Sbjct: 489 ------DYLEHDSMDDQAL-FLHEKNLFVPEGRSS-----DNYNNDAASSNPLM------ 530
Query: 556 SCCDGV--EEVDKDITPDNKVGT--------------SSNQKDQFIWLDDYKCSLCGTEM 599
CDGV +E+D D + T SS++ DQ W++ Y CS+CG E+
Sbjct: 531 --CDGVGGKELDDDSSSSKGTHTVKFDGQLTSSNATTSSSKPDQLFWINGYICSICGFEL 588
Query: 600 PPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEK 659
PP F EERQEHSD+HLAE LQ+EE+ L+ +ER + +K+ K K
Sbjct: 589 PPGFEEERQEHSDYHLAEMLQQEEAVDSTGPLS-KERLAERPCSSTPTPKKKLKSS---K 644
Query: 660 EGTHIPIDMFFAK 672
EG HIPID FF K
Sbjct: 645 EGKHIPIDAFFHK 657
>gi|8569099|gb|AAF76444.1|AC015445_11 Contains similarity to DINP protein from Homo sapiens gb|AF194973
and contains an IMS PF|00817 domain [Arabidopsis
thaliana]
Length = 435
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/430 (80%), Positives = 388/430 (90%)
Query: 5 DGECASSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFI 64
+GE +S++ + RPW+SY+TV+TNAKAGM+GVDKEKVQ+VVYEMSKGSKYF+NEERKEA +
Sbjct: 3 NGESSSTNNSSRPWESYNTVFTNAKAGMEGVDKEKVQRVVYEMSKGSKYFQNEERKEALM 62
Query: 65 QQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSN 124
+QKIEHMR RCAKL+S +S+YQKV DKRILELEATRDLSR WLHVDMDAFYAAVETLS+
Sbjct: 63 KQKIEHMRDRCAKLSSLDLSNYQKVVDKRILELEATRDLSRIWLHVDMDAFYAAVETLSD 122
Query: 125 PSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDL 184
PS+KGKPMAVG +SMI TANYEAR+FGVRAAMPGFIARKLCP+LIFVP DFTKYT+YSDL
Sbjct: 123 PSIKGKPMAVGGLSMISTANYEARKFGVRAAMPGFIARKLCPDLIFVPVDFTKYTHYSDL 182
Query: 185 TRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAP 244
TRKVF YDP+F+A SLDEAYLDITEVCRERG+SG EIAEELR+SVY E GLTCSAGVA
Sbjct: 183 TRKVFRNYDPHFIAGSLDEAYLDITEVCRERGLSGGEIAEELRSSVYSETGLTCSAGVAA 242
Query: 245 NRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCE 304
NRLLAKVCSDINKPNGQFVL NDR VMTF+S LP+RKIGGIGKVTEHIL+D GI TCE
Sbjct: 243 NRLLAKVCSDINKPNGQFVLQNDRSTVMTFVSFLPVRKIGGIGKVTEHILKDALGIKTCE 302
Query: 305 EMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK 364
EM+QKGSLL A+FS S+ADFFLSVGLGLG TNTPQ R RKSISSERTF+ T D+ LLY K
Sbjct: 303 EMVQKGSLLYALFSQSSADFFLSVGLGLGGTNTPQVRSRKSISSERTFAATGDERLLYSK 362
Query: 365 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA 424
L E+AEMLS DM+KEGL RTLTLKLKTASFE+R+RAV+LQ+Y SS+DILKHA+ LLKA
Sbjct: 363 LDELAEMLSHDMKKEGLTARTLTLKLKTASFEIRSRAVSLQRYTCSSDDILKHATKLLKA 422
Query: 425 ELPVSLRLIG 434
ELPVS+RLIG
Sbjct: 423 ELPVSVRLIG 432
>gi|115454119|ref|NP_001050660.1| Os03g0616300 [Oryza sativa Japonica Group]
gi|113549131|dbj|BAF12574.1| Os03g0616300 [Oryza sativa Japonica Group]
Length = 617
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/678 (52%), Positives = 447/678 (65%), Gaps = 88/678 (12%)
Query: 16 RPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARC 75
RPW+SYHT YTNAKAGM+GVDKEKVQK
Sbjct: 12 RPWESYHTAYTNAKAGMEGVDKEKVQK--------------------------------- 38
Query: 76 AKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG 135
+VA+ +ILELEA+RDLS+ WLH DMDAFYA VE L NPSLKGKP+AVG
Sbjct: 39 ------------QVAEHKILELEASRDLSKIWLHTDMDAFYATVEILENPSLKGKPLAVG 86
Query: 136 TMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPN 195
+MSMI TA+YEAR+FGVRAAMPGFI KLCPEL+FV +F +YTYYS+LTRKVF +YDPN
Sbjct: 87 SMSMIATASYEARKFGVRAAMPGFIGCKLCPELVFVRPNFERYTYYSELTRKVFQRYDPN 146
Query: 196 FMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
F+A SLDEAYL+IT+VC +RGI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDI
Sbjct: 147 FVATSLDEAYLNITKVCFDRGITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDI 206
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 315
NKPNGQF+LPND+ AV TF+S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK S LCA
Sbjct: 207 NKPNGQFILPNDQEAVTTFVSTLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKASFLCA 266
Query: 316 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 375
+FS S+ADFF+SVGLGLG T TP+ R RKSIS ERTF T+D ++L+ KL +A+ L+ D
Sbjct: 267 LFSESSADFFISVGLGLGGTETPEQRLRKSISCERTFRATDDCSMLFEKLDSLADNLADD 326
Query: 376 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGL 435
MQKE L+GRTLTLKLKTA+FEVRTRAVT Q YI+S EDIL +A LLKAELP+SLRL+GL
Sbjct: 327 MQKECLKGRTLTLKLKTAAFEVRTRAVTTQNYINSKEDILIYARKLLKAELPLSLRLMGL 386
Query: 436 RVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSL 495
R++Q ++K + S TQKTL F + S I + S+G+ D + T V
Sbjct: 387 RMSQLRDEKDDS-STQTQKTLDRFFRTPDNSNVIGANSPSIGNTTGGDNYCTNVMTKV-- 443
Query: 496 DVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEG 555
+Y D + D +L L+++N S +N + N L+
Sbjct: 444 ------DYLEHDSMDDQAL-FLHEKNLFVPEGRSS-----DNYNNDAASSNPLM------ 485
Query: 556 SCCDGV--EEVDKDITPDNKVGT--------------SSNQKDQFIWLDDYKCSLCGTEM 599
CDGV +E+D D + T SS++ DQ W++ Y CS+CG E+
Sbjct: 486 --CDGVGGKELDDDSSSSKGTHTVKFDGQLTSSNATTSSSKPDQLFWINGYICSICGFEL 543
Query: 600 PPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEK 659
PP F EERQEHSDFHLAE LQ+EE+ L+ +ER + +K+ K K
Sbjct: 544 PPGFEEERQEHSDFHLAEMLQQEEAVDSTGPLS-KERLAERPCSSTPTPKKKLKSS---K 599
Query: 660 EGTHIPIDMFFAKRNRNF 677
EG HIPID FF K N+N
Sbjct: 600 EGKHIPIDAFFHKVNKNL 617
>gi|50838892|gb|AAT81653.1| putative DNA-directed polymerase, having alternative splicing
products [Oryza sativa Japonica Group]
gi|108709841|gb|ABF97636.1| DNA-directed polymerase kappa, putative, expressed [Oryza sativa
Japonica Group]
Length = 616
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/678 (52%), Positives = 446/678 (65%), Gaps = 89/678 (13%)
Query: 16 RPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARC 75
RPW+SYHT YTNAKAGM+GVDKEKVQ
Sbjct: 12 RPWESYHTAYTNAKAGMEGVDKEKVQ---------------------------------- 37
Query: 76 AKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG 135
KVA+ +ILELEA+RDLS+ WLH DMDAFYA VE L NPSLKGKP+AVG
Sbjct: 38 ------------KVAEHKILELEASRDLSKIWLHTDMDAFYATVEILENPSLKGKPLAVG 85
Query: 136 TMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPN 195
+MSMI TA+YEAR+FGVRAAMPGFI KLCPEL+FV +F +YTYYS+LTRKVF +YDPN
Sbjct: 86 SMSMIATASYEARKFGVRAAMPGFIGCKLCPELVFVRPNFERYTYYSELTRKVFQRYDPN 145
Query: 196 FMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
F+A SLDEAYL+IT+VC +RGI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDI
Sbjct: 146 FVATSLDEAYLNITKVCFDRGITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDI 205
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 315
NKPNGQF+LPND+ AV TF+S+LPIRKIGGIGKVTE +LR V GI+TC+EMLQK S LCA
Sbjct: 206 NKPNGQFILPNDQEAVTTFVSTLPIRKIGGIGKVTEQMLRQVLGISTCQEMLQKASFLCA 265
Query: 316 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 375
+FS S+ADFF+SVGLGLG T TP+ R RKSIS ERTF T+D ++L+ KL +A+ L+ D
Sbjct: 266 LFSESSADFFISVGLGLGGTETPEQRLRKSISCERTFRATDDCSMLFEKLDSLADNLADD 325
Query: 376 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGL 435
MQKE L+GRTLTLKLKTA+FEVRTRAVT Q YI+S EDIL +A LLKAELP+SLRL+GL
Sbjct: 326 MQKECLKGRTLTLKLKTAAFEVRTRAVTTQNYINSKEDILIYARKLLKAELPLSLRLMGL 385
Query: 436 RVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSL 495
R++Q ++K + S TQKTL F + S I + S+G+ D + T V
Sbjct: 386 RMSQLRDEKDDS-STQTQKTLDRFFRTPDNSNVIGANSPSIGNTTGGDNYCTNVMTKV-- 442
Query: 496 DVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEG 555
+Y D + D +L L+++N S +N + N L+
Sbjct: 443 ------DYLEHDSMDDQAL-FLHEKNLFVPEGRSS-----DNYNNDAASSNPLM------ 484
Query: 556 SCCDGV--EEVDKDITPDNKVGT--------------SSNQKDQFIWLDDYKCSLCGTEM 599
CDGV +E+D D + T SS++ DQ W++ Y CS+CG E+
Sbjct: 485 --CDGVGGKELDDDSSSSKGTHTVKFDGQLTSSNATTSSSKPDQLFWINGYICSICGFEL 542
Query: 600 PPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEK 659
PP F EERQEHSDFHLAE LQ+EE+ L+ +ER + +K+ K K
Sbjct: 543 PPGFEEERQEHSDFHLAEMLQQEEAVDSTGPLS-KERLAERPCSSTPTPKKKLKSS---K 598
Query: 660 EGTHIPIDMFFAKRNRNF 677
EG HIPID FF K N+N
Sbjct: 599 EGKHIPIDAFFHKVNKNL 616
>gi|357115809|ref|XP_003559678.1| PREDICTED: DNA polymerase kappa-like [Brachypodium distachyon]
Length = 626
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/685 (52%), Positives = 437/685 (63%), Gaps = 96/685 (14%)
Query: 16 RPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARC 75
RPWQSYHT YTN KAGM+GVDKEKVQ
Sbjct: 15 RPWQSYHTAYTNGKAGMEGVDKEKVQ---------------------------------- 40
Query: 76 AKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG 135
KVA+K+ILELEA+RDLS+ WLH DMDAFYAAVE L NPSLKGKP+AVG
Sbjct: 41 ------------KVAEKKILELEASRDLSKIWLHTDMDAFYAAVEILENPSLKGKPLAVG 88
Query: 136 TMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPN 195
+MSMI TA+YEAR+FGVRAAMPGFI KLCP+L+FV +F +YT+YS+L RKVF +YDPN
Sbjct: 89 SMSMIATASYEARKFGVRAAMPGFIGCKLCPDLVFVRPNFERYTHYSELARKVFQRYDPN 148
Query: 196 FMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
F A SLDEAYL+ITEVC ERGI+G E+A ELR ++++E GLTCS GVAPNR++AKVCSDI
Sbjct: 149 FFATSLDEAYLNITEVCIERGITGEEVASELRGAIHQETGLTCSVGVAPNRMIAKVCSDI 208
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 315
NKPNGQF+LPN+R AV TF+S+LPIRKIGGIGKVTE +L V GI TC++MLQK + LCA
Sbjct: 209 NKPNGQFILPNERDAVTTFVSTLPIRKIGGIGKVTEQMLHQVLGITTCQQMLQKAAFLCA 268
Query: 316 VFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 375
+FS + DFFLSVGLGLG T TP+ R RKS+S ERTFS T D +L + KL +AE L+ D
Sbjct: 269 LFSEGSTDFFLSVGLGLGGTETPEHRLRKSMSCERTFSATNDYSLQFEKLDNLAENLADD 328
Query: 376 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGL 435
+QKE L+GRTLTLKLKTA+FEVRTRA T Q YISS EDIL A LLKAELP+SLRL+GL
Sbjct: 329 LQKECLKGRTLTLKLKTAAFEVRTRAATAQSYISSKEDILICAKKLLKAELPLSLRLMGL 388
Query: 436 RVTQFNEDKVRAPSDPTQKTLTNFM-----------TSGHASKKIV-GDQNSLGSDINDD 483
R++ +K P+ PTQKTL F T+G +S GD ++G+ D+
Sbjct: 389 RMSHLCGEK-DDPTIPTQKTLDRFFRLSDNNSNVNRTNGASSNDASGGDDCNIGATTKDE 447
Query: 484 CLIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLL 543
CLI D T +S D + F NDEN + S V ++NEV +
Sbjct: 448 CLIHDAVTDISSD-----QHTFFS----------NDENIFVPEERSSVN--YDNEV---V 487
Query: 544 EGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSN-----------QKDQFIWLDDYKC 592
N L G+ DG K +T K S+ + +Q W+D Y C
Sbjct: 488 SSNLLTCDDLGGTKLDGNTSNSK-VTQSEKFDDLSHFTSCKASASSSKPNQQFWVDGYIC 546
Query: 593 SLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRK 652
SLCG E+PP F EERQEHSDFHLAE LQ+EE+ LT +ER Q +K K
Sbjct: 547 SLCGFELPPCFEEERQEHSDFHLAELLQQEEALDSSGHLT-KERLAERQSTTPTPKKKLK 605
Query: 653 KQKLFEKEGTHIPIDMFFAKRNRNF 677
KEG HIPID FF K N+
Sbjct: 606 SS----KEGKHIPIDSFFLKHNKKL 626
>gi|302775514|ref|XP_002971174.1| hypothetical protein SELMODRAFT_441472 [Selaginella moellendorffii]
gi|300161156|gb|EFJ27772.1| hypothetical protein SELMODRAFT_441472 [Selaginella moellendorffii]
Length = 561
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 280/459 (61%), Positives = 358/459 (77%), Gaps = 6/459 (1%)
Query: 2 ERSDGECASSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKE 61
+R+ +++E +PW SY TV+ NAKAGM GVDKEKVQKVVYEMSKGS+YFENE+RKE
Sbjct: 7 DRAGSSSEAAAEGDKPWHSYDTVFLNAKAGMSGVDKEKVQKVVYEMSKGSRYFENEQRKE 66
Query: 62 AFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVET 121
A +QQ+IE R + AK+++ ++ + D+ ILELEA+R+L ++W+HVDMDAFYAAVET
Sbjct: 67 AILQQRIEKFREQAAKISTTKLAETKAAVDRGILELEASRNLDKTWMHVDMDAFYAAVET 126
Query: 122 LSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYY 181
+ + SL KPMAVG MSMICTANYEAR+FGVRAAMPGFIA KLCP+L+ + +F KYT+Y
Sbjct: 127 VEDVSLSCKPMAVGGMSMICTANYEARKFGVRAAMPGFIACKLCPDLVLIKPNFEKYTHY 186
Query: 182 SDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAG 241
S+LTR+VF YD NF+A SLDEAYLDITE CR I+ E+AE LR V+E+ LTCSAG
Sbjct: 187 SELTRQVFRLYDKNFIARSLDEAYLDITEFCRTESIAPAEVAERLRKDVFEKTKLTCSAG 246
Query: 242 VAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGIN 301
VA NRLLAKVCSDINKPNGQFVL +DR +M F+S LPIRK+ GIGKVTE +L+DV IN
Sbjct: 247 VAANRLLAKVCSDINKPNGQFVLESDREKIMEFVSKLPIRKVSGIGKVTERLLKDVLSIN 306
Query: 302 TCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL 361
C ++++ L+ A+FS + DFFLSVGLG+G++ P RKSIS+ERTFS T D +L
Sbjct: 307 MCSDLIENRYLISALFSTISTDFFLSVGLGIGASEAPHEEQRKSISNERTFSPTSDANIL 366
Query: 362 YRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL 421
+ L ++AE LS DM KE L+GRTLTLKLKT++FEVR+RAV++Q +ISS ++I A L
Sbjct: 367 GKILGDLAESLSEDMIKENLQGRTLTLKLKTSTFEVRSRAVSVQHFISSKKEIESLAIKL 426
Query: 422 LKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFM 460
LKAELP+SLRL+G+RV+QF ED DP+QK++ +F+
Sbjct: 427 LKAELPISLRLLGVRVSQFKED------DPSQKSIASFL 459
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 586 WLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRI 630
W D +CSLCG + + RQEH DFH A ++Q+++S + L +
Sbjct: 499 WTQDDRCSLCGERISSEYPTLRQEHEDFHFALKIQQQDSVNQLEV 543
>gi|302756981|ref|XP_002961914.1| hypothetical protein SELMODRAFT_403334 [Selaginella moellendorffii]
gi|300170573|gb|EFJ37174.1| hypothetical protein SELMODRAFT_403334 [Selaginella moellendorffii]
Length = 561
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 280/459 (61%), Positives = 357/459 (77%), Gaps = 6/459 (1%)
Query: 2 ERSDGECASSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKE 61
+R+ G ++ +PW Y TV+ NAKAGM GVDKEKVQKVVYEMSKGS+YFENE+RKE
Sbjct: 7 DRAGGSSEVAAGGDKPWHCYDTVFLNAKAGMSGVDKEKVQKVVYEMSKGSRYFENEQRKE 66
Query: 62 AFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVET 121
A +QQ+IE R + AK+++ ++ + D+RILELEA+R+L ++W+HVDMDAFYAAVET
Sbjct: 67 AILQQRIEKFREQAAKISTTKLAETKAAVDRRILELEASRNLDKTWMHVDMDAFYAAVET 126
Query: 122 LSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYY 181
+ + SL KPMAVG MSMICTANYEAR+FGVRAAMPGFIA KLCP+L+ + +F KYT+Y
Sbjct: 127 VEDVSLSCKPMAVGGMSMICTANYEARKFGVRAAMPGFIACKLCPDLVLIKPNFEKYTHY 186
Query: 182 SDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAG 241
S+LTR+VF YD NF+A SLDEAYLDITE CR I+ E+AE LR V+E+ LTCSAG
Sbjct: 187 SELTRQVFRLYDKNFIARSLDEAYLDITEFCRTESIAPAEVAERLRKDVFEKTKLTCSAG 246
Query: 242 VAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGIN 301
VA NRLLAKVCSDINKPNGQFVL +DR +M F+S LPIRK+ GIGKVTE +L+DV IN
Sbjct: 247 VAANRLLAKVCSDINKPNGQFVLESDREKIMEFVSKLPIRKVSGIGKVTERLLKDVLSIN 306
Query: 302 TCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL 361
C ++++ L+ A+FS + DFFLSVGLG+G++ P RKSIS+ERTFS T D +L
Sbjct: 307 MCSDLIENRYLISALFSTISTDFFLSVGLGIGASEAPHEEQRKSISNERTFSPTSDANIL 366
Query: 362 YRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL 421
+ L ++AE LS DM KE L+GRTLTLKLKT++FEVR+RAV++Q +ISS ++I A L
Sbjct: 367 GKILGDLAESLSEDMIKENLQGRTLTLKLKTSTFEVRSRAVSVQHFISSKKEIESLAIKL 426
Query: 422 LKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFM 460
LKAELP+SLRL+G+RV+QF ED DP+QK++ +F+
Sbjct: 427 LKAELPISLRLLGVRVSQFKED------DPSQKSIASFL 459
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 586 WLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRI 630
W D +CSLCG + + RQEH DFH A ++Q+++S + L +
Sbjct: 499 WTQDDRCSLCGERISSEYPTLRQEHEDFHFALKIQQQDSVNQLEV 543
>gi|224060812|ref|XP_002300273.1| predicted protein [Populus trichocarpa]
gi|222847531|gb|EEE85078.1| predicted protein [Populus trichocarpa]
Length = 323
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 277/323 (85%), Positives = 299/323 (92%)
Query: 31 GMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQKVA 90
GM+GVDKEKVQ++VYE SKGSKYFENEE+KEA ++QKIE+MRA+ AKL++ +SHYQ VA
Sbjct: 1 GMEGVDKEKVQRIVYETSKGSKYFENEEKKEALLRQKIENMRAQSAKLSAADLSHYQTVA 60
Query: 91 DKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRF 150
D+RILELEA RDLSR WLHVDMDAFYAAVETLSNPSLKGKPMAVG +SMI TANYEARRF
Sbjct: 61 DRRILELEAMRDLSRIWLHVDMDAFYAAVETLSNPSLKGKPMAVGGLSMISTANYEARRF 120
Query: 151 GVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE 210
GVRAAMPGFIARKLCPELIFVPTDF KYT+YS+LTRKVF KYDPNFMAASLDEA+LDITE
Sbjct: 121 GVRAAMPGFIARKLCPELIFVPTDFKKYTHYSELTRKVFEKYDPNFMAASLDEAHLDITE 180
Query: 211 VCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMA 270
VC+ERG+S EIAEELR V EE GLTCSAGVAPNRLLAKVCSDINKPNGQFVL NDRMA
Sbjct: 181 VCKERGMSCGEIAEELRKCVNEETGLTCSAGVAPNRLLAKVCSDINKPNGQFVLTNDRMA 240
Query: 271 VMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL 330
VMTFISSLPIRKIGGIGKVTEHILRD FGI+TCEEMLQKG LLCA+FSHSTADFFLSVGL
Sbjct: 241 VMTFISSLPIRKIGGIGKVTEHILRDAFGISTCEEMLQKGGLLCALFSHSTADFFLSVGL 300
Query: 331 GLGSTNTPQARFRKSISSERTFS 353
G+G T+TPQ R RKSISSERTFS
Sbjct: 301 GIGKTDTPQVRSRKSISSERTFS 323
>gi|293334565|ref|NP_001167938.1| uncharacterized protein LOC100381652 [Zea mays]
gi|223944997|gb|ACN26582.1| unknown [Zea mays]
Length = 535
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 298/555 (53%), Positives = 383/555 (69%), Gaps = 36/555 (6%)
Query: 137 MSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNF 196
MSMI TA+YEAR+FGVRAAMPGFI KLCP+L+FVP +F +YT+YS+LTRKVF +YDPNF
Sbjct: 1 MSMIATASYEARKFGVRAAMPGFIGCKLCPDLVFVPPNFERYTHYSELTRKVFQRYDPNF 60
Query: 197 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 256
+A SLDEAYL+IT VC ERGI+G E+A ELR+++++E GLTCSAGVAPNR++AKVCSDIN
Sbjct: 61 IATSLDEAYLNITNVCIERGITGEEVAIELRSAIHQETGLTCSAGVAPNRMIAKVCSDIN 120
Query: 257 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 316
KPNGQF+LPNDR AV+TF+S+LPIRKIGGIGKVTE +L V GI+TC+EMLQK + LCA+
Sbjct: 121 KPNGQFILPNDREAVLTFVSTLPIRKIGGIGKVTEQMLHQVLGISTCQEMLQKAAFLCAL 180
Query: 317 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 376
FS S+ADFFLSVGLGLG T TP+ R RKSIS ERTF+ T D +LL++KLA +AE LS D+
Sbjct: 181 FSESSADFFLSVGLGLGGTETPEQRQRKSISCERTFTATNDSSLLFKKLASLAENLSDDL 240
Query: 377 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 436
QKEG +G+TLTLKLKTA FEVRTRAVT + YI S EDIL +A+ L+KAE+P+SLRL+GLR
Sbjct: 241 QKEGFKGKTLTLKLKTADFEVRTRAVTTRNYIDSKEDILVYATKLIKAEMPISLRLMGLR 300
Query: 437 VTQFNEDKVRAPSDPTQKTLTNFM-----TSGHASKKIVGDQNSLGSDINDDCLIDDKET 491
++Q +++K PS TQKTL F S + NS G D ND + KE
Sbjct: 301 MSQLHDEK-DDPSTSTQKTLDIFFRSSNSNSNGNGTTVQRITNSPGQD-NDSISLTTKEE 358
Query: 492 SVSLDVS---ETNNYEFGDPVCDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSL 548
++ D T +F L+DE C I E ++ +N+ + + + L
Sbjct: 359 YLAPDAGTSVSTGQQDFF----------LHDEICF----IPEQQRSLDNDTKEAVLSDPL 404
Query: 549 -------VLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPP 601
V + + ++E D I+P K +SS++ DQ W+D Y CS+CG E+PP
Sbjct: 405 GGTKSDDVSSSAKVTPTKKLDEPDPLISP--KAVSSSSKPDQQSWIDGYICSICGFELPP 462
Query: 602 SFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEG 661
F EER EHSDFHLAE LQ+EE+ R +++ R + +K+ K KEG
Sbjct: 463 GFEEERLEHSDFHLAETLQQEEAVDGTRHISNESWVAERPRSTAPTPKKKLKSS---KEG 519
Query: 662 THIPIDMFFAKRNRN 676
HIPID FF K N++
Sbjct: 520 KHIPIDSFFTKCNKS 534
>gi|384251631|gb|EIE25108.1| DNA polymerase kappa [Coccomyxa subellipsoidea C-169]
Length = 494
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/443 (54%), Positives = 316/443 (71%), Gaps = 14/443 (3%)
Query: 4 SDGECASSSENPRPWQSYH-TVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEA 62
S GE A SE+ WQ + V+TNAKAGM GVDK+KV+ VVYEMSK S +F+NEERK+A
Sbjct: 17 STGEPAQKSEDTANWQQWSGAVFTNAKAGMAGVDKDKVKAVVYEMSKDSAHFKNEERKQA 76
Query: 63 FIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETL 122
Q++I M+ R L++ I+ + K D ++ L+A DL+R+W+HVDMDAF+A+VE L
Sbjct: 77 QTQERIRKMQERAKILSASKIAGHTKAMDAKLANLKAEMDLTRTWVHVDMDAFFASVEEL 136
Query: 123 SNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYS 182
+PSLKGKPMAVG + MICTANY AR+FGVR+AMPGFI R+LCPEL+FV +F KYT +
Sbjct: 137 DDPSLKGKPMAVGGIGMICTANYAARKFGVRSAMPGFIGRRLCPELLFVKPNFQKYTKAA 196
Query: 183 DLTRKVFCKYDPNFMAASLDEAYLDITEVCRE-------RGISGIEIAEELRTSVYEEAG 235
+R VFC +DP+F A SLDEAYLDIT+ CR + +G +AEE+R V EE
Sbjct: 197 AASRAVFCLFDPDFEAGSLDEAYLDITDYCRAHETTGNGKHGAGEAVAEEIRRRVREETL 256
Query: 236 LTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR 295
LTCS G+ PNRLLAKV SD+ KP+GQ+ +P + A+ F+ LPIRK+ GIGKV+E +L+
Sbjct: 257 LTCSCGIGPNRLLAKVASDMRKPDGQYAIPGEHSAISRFVDPLPIRKVPGIGKVSEQVLK 316
Query: 296 DVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST--NTP---QARFRKSISSER 350
G+ C ++L K LL A+FS +ADFF+ VGLG+G T + P A RK IS ER
Sbjct: 317 -ALGVEVCADLLAKRGLLAALFSPISADFFMEVGLGVGRTQHSAPVEDGAVGRKGISVER 375
Query: 351 TFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISS 410
TF+ A L K AE+AE L+ D+ EGL+GRT+TLKLKT +FEVRTRA TL ++IS+
Sbjct: 376 TFAALSTPADLEAKCAELAEKLAEDVTGEGLKGRTITLKLKTTNFEVRTRAATLSRHISA 435
Query: 411 SEDILKHASVLLKAELPVSLRLI 433
SEDIL+ A LL+AELP+++RL+
Sbjct: 436 SEDILREALRLLRAELPITIRLM 458
>gi|50838893|gb|AAT81654.1| putative DNA-directed polymerase, having alternative splicing
products [Oryza sativa Japonica Group]
Length = 291
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 202/268 (75%), Positives = 241/268 (89%)
Query: 16 RPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARC 75
RPW+SYHT YTNAKAGM+GVDKEKVQKV+YEMSKGSKYFENE+RKEA +QKI+H+RA+C
Sbjct: 12 RPWESYHTAYTNAKAGMEGVDKEKVQKVIYEMSKGSKYFENEQRKEAITKQKIDHLRAQC 71
Query: 76 AKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG 135
AKLT ISH+QKVA+ +ILELEA+RDLS+ WLH DMDAFYA VE L NPSLKGKP+AVG
Sbjct: 72 AKLTDNDISHFQKVAEHKILELEASRDLSKIWLHTDMDAFYATVEILENPSLKGKPLAVG 131
Query: 136 TMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPN 195
+MSMI TA+YEAR+FGVRAAMPGFI KLCPEL+FV +F +YTYYS+LTRKVF +YDPN
Sbjct: 132 SMSMIATASYEARKFGVRAAMPGFIGCKLCPELVFVRPNFERYTYYSELTRKVFQRYDPN 191
Query: 196 FMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
F+A SLDEAYL+IT+VC +RGI+G E+A ELR ++++E GLTCSAGVAPNR++AKVCSDI
Sbjct: 192 FVATSLDEAYLNITKVCFDRGITGEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDI 251
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKI 283
NKPNGQF+LPND+ AV TF+S+LPIRK+
Sbjct: 252 NKPNGQFILPNDQEAVTTFVSTLPIRKV 279
>gi|159487333|ref|XP_001701677.1| DNA polymerase kappa [Chlamydomonas reinhardtii]
gi|158280896|gb|EDP06652.1| DNA polymerase kappa [Chlamydomonas reinhardtii]
Length = 429
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/429 (51%), Positives = 290/429 (67%), Gaps = 9/429 (2%)
Query: 18 WQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAK 77
W+ Y TV+TNAKAGMDGVDK +VQ+VV+EMSK S +F+NE+RK+A + ++IE M+ R A
Sbjct: 1 WKDYQTVFTNAKAGMDGVDKARVQQVVWEMSKDSAHFKNEQRKQASVLERIERMKQRSAA 60
Query: 78 LTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM 137
LT+ I+ + D RI EA RDL+R+WLHVDMD FYAAV P LK P+AVG M
Sbjct: 61 LTTMEITAAGRAMDARIAGCEARRDLTRTWLHVDMDCFYAAVHEREQPELKRLPVAVGGM 120
Query: 138 SMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFM 197
MI TANY ARRFGVR+AMPGFI ++LCP+L+FV DF KYT + + R F + DP+F
Sbjct: 121 GMISTANYVARRFGVRSAMPGFIGKRLCPKLVFVKPDFAKYTEAAAVVRGAFKQLDPDFE 180
Query: 198 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDIN 256
+ LDEAYLD+T C SG E A ELR V E GLTCS GVA N++LAK+CSDIN
Sbjct: 181 SGGLDEAYLDVTGYCTRTATSGEEAATELRRLVKEVSGGLTCSVGVACNKMLAKICSDIN 240
Query: 257 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS--LLC 314
KP+GQ+VLP R AVM+F+ +LP+RKI IGKVTE +L+ V G++TC ++L S L
Sbjct: 241 KPDGQYVLPASRAAVMSFLDTLPVRKIPCIGKVTEQVLQGVLGVSTCGQLLAPASRCRLP 300
Query: 315 AVFSHSTADFFLSVGLGLG------STNTPQARFRKSISSERTFSVTEDKALLYRKLAEI 368
+FS + A FFL LGL T+T RK +S ERTF A ++
Sbjct: 301 LLFSEAAAGFFLEAALGLAPTRHGPKTDTSVDPGRKGLSHERTFRNMSAPAEQEAMAKQL 360
Query: 369 AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV 428
E L ADM +EG+ GR +TLKLK ++FEV TRA T+ +++ + DIL LL+AE+PV
Sbjct: 361 VEALVADMAEEGIEGRNITLKLKLSTFEVHTRAATMPRHVRTVSDILPAVLRLLRAEMPV 420
Query: 429 SLRLIGLRV 437
+LRL+G+R+
Sbjct: 421 TLRLMGVRM 429
>gi|326668001|ref|XP_691219.4| PREDICTED: DNA polymerase kappa [Danio rerio]
Length = 902
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 222/501 (44%), Positives = 300/501 (59%), Gaps = 72/501 (14%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+D++K+ K++ E SKGS+++ENE +KE + Q+IE M + AK+T + Q
Sbjct: 38 KAGMEGLDRDKINKIILETSKGSRFYENELKKERQVNQRIEKMMEQKAKITKEQMKQAQA 97
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ ++LE +R+L R +HVDMDAFYAAVE P LK KPMAVG+MSM+ T+NY AR
Sbjct: 98 EVDRLTVDLERSRELGRVIVHVDMDAFYAAVEMRDCPELKDKPMAVGSMSMLSTSNYHAR 157
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA+KLCP+L+ VPT+F KY S R++F +YDPNFM SLDEAYLDI
Sbjct: 158 RFGVRAAMPGFIAKKLCPDLVIVPTNFDKYRAVSAQVREIFSEYDPNFMPMSLDEAYLDI 217
Query: 209 T-------------------------EVCR-----ER----------------------- 215
T + CR ER
Sbjct: 218 TEHLEQRKHWPDTMRTHKICDAKTESDACRSTSESERDELSPVLFEDSPSSSPSLSGADG 277
Query: 216 -----GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMA 270
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +P +R
Sbjct: 278 KAEVFGTSAEEAVREMRFRIEQKTSLTASAGIAPNMMLAKVCSDKNKPNGQYRIPPERQV 337
Query: 271 VMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL 330
VM F+ LP+RK+ G+GKVTE +L GI TC ++ Q+ +LL +FS ++ FL + L
Sbjct: 338 VMDFMKDLPVRKVSGVGKVTEKMLA-ALGIVTCSQLGQQMALLSLLFSETSWHHFLHISL 396
Query: 331 GLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 390
GLGST + RKS+S+ERTF D Y E+ L+ D+Q+EGL+G+T+TLKL
Sbjct: 397 GLGSTYMERDSERKSMSTERTFGEMSDAGEQYSLCKELCHDLAQDLQREGLKGKTVTLKL 456
Query: 391 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NE 442
K FEV+T+A TLQ + + E+I A LLK E+ P+ LRL+G+RV+ F E
Sbjct: 457 KNVKFEVKTKAFTLQYAVCTEEEIFAAAKDLLKVEIDSVSPQPLKLRLMGVRVSGFISTE 516
Query: 443 DKVRAPSDPTQKTLTNFMTSG 463
DK P QK++ F+ G
Sbjct: 517 DK-----KPLQKSIMGFLQKG 532
>gi|56160410|gb|AAV80819.1| polymerase kappa isoform 3 [Mus musculus]
Length = 772
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 213/450 (47%), Positives = 299/450 (66%), Gaps = 15/450 (3%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ +ER + E + + + G G+APN +LAKVCSD NKPNGQ+ + R
Sbjct: 204 TQHLQER-----QDWPEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKNKPNGQYQILPSR 258
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
AVM FI LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL +
Sbjct: 259 SAVMDFIKDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHI 317
Query: 329 GLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 388
LGLGST+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+
Sbjct: 318 ALGLGSTDLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTI 377
Query: 389 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNE 442
KLK +FEV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+
Sbjct: 378 KLKNVNFEVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSS 437
Query: 443 DKVRAPSDPTQKTLTNFMTSGHASKKIVGD 472
+ R Q+++ F+ +G+ + GD
Sbjct: 438 EDDRKHQ---QRSIIGFLQAGNQALSSTGD 464
>gi|303283178|ref|XP_003060880.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457231|gb|EEH54530.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 424
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/425 (48%), Positives = 286/425 (67%), Gaps = 8/425 (1%)
Query: 17 PWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCA 76
P ++ +TNAKAGM+GVD+E V++VV++MS S +F E RKEA ++ KI M+ R A
Sbjct: 1 PTSAFTNAFTNAKAGMEGVDREMVKRVVHDMSVNSAHFATESRKEAAVEAKILAMKKRAA 60
Query: 77 KLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT 136
+ ++ + D R+ +EA+RDL+++W+HVDMD+F+A+V L P L+ PMAVG
Sbjct: 61 SIRPSALATIKAAVDDRVARMEASRDLTKTWVHVDMDSFFASVHILERPELRDVPMAVGG 120
Query: 137 MSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNF 196
MSMI TANY AR+FGVR+AMPGFIA+KLCP+L+FV +DF KY +Y+ LTR+VF +YDP F
Sbjct: 121 MSMISTANYAARKFGVRSAMPGFIAKKLCPQLVFVDSDFAKYKHYASLTREVFKEYDPQF 180
Query: 197 MAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 256
A SLDEAYL+I+ C + ++ ++AE LR V E+ LTCSAGVAP R LAKVCSD N
Sbjct: 181 DAGSLDEAYLEISAYCAGKSMTPADVAEALRREVREKTKLTCSAGVAPTRRLAKVCSDAN 240
Query: 257 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 316
KP+GQ V+ R AV +SSLP+RKIGG+GKV + L FGI TC ++L++ +L+ A+
Sbjct: 241 KPDGQMVIEPTRDAVAALLSSLPVRKIGGVGKVLDRTL-AAFGIATCGDLLRERALVVAL 299
Query: 317 FSHSTADFFLSVGLGLGSTNTPQ-----ARFRKSISSERTFSVTEDKALLYRKLAEIAEM 371
FS +DF L V +G+G P A RKS+S ERTF+ T D L K+A +AE
Sbjct: 300 FSEVQSDFLLGVAIGVGGEARPARPPGWAPQRKSLSQERTFAPTADARALAAKIAALAEE 359
Query: 372 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--S 429
++A + +E L RT+TLK+K A FEV R +L + + ++ I A L + E S
Sbjct: 360 VAAGLARENLLTRTVTLKMKRADFEVAQRQTSLPRPTNDAQTISDAALRLFRGEKNTHGS 419
Query: 430 LRLIG 434
LRL+G
Sbjct: 420 LRLLG 424
>gi|56160408|gb|AAV80818.1| polymerase kappa isoform 2 [Mus musculus]
Length = 793
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 215/467 (46%), Positives = 302/467 (64%), Gaps = 28/467 (5%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRERGISG-------IEIAEELRTSVYEEAGLTCS----------AGVAPNRLLAKV 251
T+ +ER I++ L+ ++ L S G+APN +LAKV
Sbjct: 204 TQHLQERQDWPEDKRRYFIKMGNYLKIAMM-TLDLAASNLNLLRPAKPPGIAPNTMLAKV 262
Query: 252 CSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS 311
CSD NKPNGQ+ + R AVM FI LPIRK+ GIGKVTE +L GI TC E+ Q+ +
Sbjct: 263 CSDKNKPNGQYQILPSRSAVMDFIKDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRA 321
Query: 312 LLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM 371
LL +FS ++ +FL + LGLGST+ + RKS+S ERTFS Y E+
Sbjct: 322 LLSLLFSETSWHYFLHIALGLGSTDLARDGERKSMSVERTFSEISKTEEQYSLCQELCAE 381
Query: 372 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----- 426
L+ D+QKEGL+GRT+T+KLK +FEV+TRA T+ IS++E+I A LL+ E+
Sbjct: 382 LAHDLQKEGLKGRTVTIKLKNVNFEVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSP 441
Query: 427 -PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGD 472
P+ LRL+G+R++ F+ + R Q+++ F+ +G+ + GD
Sbjct: 442 HPLRLRLMGVRMSTFSSEDDRKHQ---QRSIIGFLQAGNQALSSTGD 485
>gi|410923427|ref|XP_003975183.1| PREDICTED: DNA polymerase kappa-like [Takifugu rubripes]
Length = 756
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 218/496 (43%), Positives = 302/496 (60%), Gaps = 66/496 (13%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+D++K+ K++ E SKGSK++ENE ++E + Q+ E M + ++T + Q
Sbjct: 23 KAGMEGLDRDKINKIIMESSKGSKFYENEVKREQQVNQRTEKMMLQKEQITEQHLKKAQA 82
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+ ++ELE RDL+R +HVDMDAFYAAVE P LK KPMAVG+MSM+ T+NY AR
Sbjct: 83 QVARMVVELEKRRDLTRVIVHVDMDAFYAAVEMRDCPELKDKPMAVGSMSMLSTSNYHAR 142
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
++GVRAAMPGFIA+KLCP L+ VPT+F KY S R++F YDPNFM SLDEAYLD
Sbjct: 143 KYGVRAAMPGFIAKKLCPNLVIVPTNFDKYRAVSSEIREIFADYDPNFMPMSLDEAYLDF 202
Query: 209 TE------------------------------------------VCRERGISGIEI---- 222
TE +C E S EI
Sbjct: 203 TEHLEKRQSWPDSLRDENNELPQETTPDVTDLSPVLFDDSPSSSLCCEDAGSAFEIFGTS 262
Query: 223 ----AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ LP+ R AVM F+ +L
Sbjct: 263 VEEAVREMRFRIEQKTLLTASAGIAPNMMLAKVCSDKNKPNGQYRLPSTREAVMEFVCNL 322
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
P+RK+ GIGKV+E +L + GI++C + QK +LL +FS + FL V LGLGS P
Sbjct: 323 PVRKVSGIGKVSEKLL-NALGISSCSHLGQKMALLSLLFSETAWHHFLQVSLGLGSAFIP 381
Query: 339 QARFRKSISSERTF---SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ RKS+S+ERTF S E++ L R E+ E L+ D++KEGL+G+T+TLKLK +F
Sbjct: 382 RHEERKSMSTERTFKEMSAAEEQLSLCR---ELCEDLANDLKKEGLKGKTVTLKLKNVNF 438
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAE------LPVSLRLIGLRVTQFNEDKVRAPS 449
EV+TRA+TL ++++++I A LLK E P+ LRL+G+R++ F +
Sbjct: 439 EVKTRALTLSYPVATADEIFAVAKDLLKTERDNESPQPLRLRLMGVRISAFVSSDEK--- 495
Query: 450 DPTQKTLTNFMTSGHA 465
P QK++ F+ G A
Sbjct: 496 QPLQKSIVGFLNPGKA 511
>gi|56160422|gb|AAV80825.1| polymerase kappa isoform 9 [Mus musculus]
Length = 467
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/411 (49%), Positives = 278/411 (67%), Gaps = 12/411 (2%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ +ER + E + + + G G+APN +LAKVCSD NKPNGQ+ + R
Sbjct: 204 TQHLQER-----QDWPEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKNKPNGQYQILPSR 258
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
AVM FI LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL +
Sbjct: 259 SAVMDFIKDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHI 317
Query: 329 GLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 388
LGLGST+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+
Sbjct: 318 ALGLGSTDLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTI 377
Query: 389 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLI 433
KLK +FEV+TRA T+ IS++E+I A LL+ E+ P+ LRL+
Sbjct: 378 KLKNVNFEVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLM 428
>gi|56160412|gb|AAV80820.1| polymerase kappa isoform 4 [Mus musculus]
Length = 453
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/401 (50%), Positives = 274/401 (68%), Gaps = 6/401 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ +ER + E + + + G G+APN +LAKVCSD NKPNGQ+ + R
Sbjct: 204 TQHLQER-----QDWPEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKNKPNGQYQILPSR 258
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
AVM FI LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL +
Sbjct: 259 SAVMDFIKDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHI 317
Query: 329 GLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 388
LGLGST+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+
Sbjct: 318 ALGLGSTDLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTI 377
Query: 389 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS 429
KLK +FEV+TRA T+ IS++E+I A LL+ E+ VS
Sbjct: 378 KLKNVNFEVKTRASTVPAAISTAEEIFAIAKELLRTEVNVS 418
>gi|443686513|gb|ELT89764.1| hypothetical protein CAPTEDRAFT_151315 [Capitella teleta]
Length = 674
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 218/532 (40%), Positives = 313/532 (58%), Gaps = 47/532 (8%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM +DKE++ KV+YEMSKGSKY+ENE+RKE ++ KI + + I +
Sbjct: 44 KAGMGNLDKERINKVIYEMSKGSKYYENEQRKEEQVKAKIAAQHKQIQSFDAREIEKSEL 103
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD + +E RD SR+ +H+DMDAFYAAVE NPSLK PMAVG +M+ T+NYEAR
Sbjct: 104 QADAMLAAIEEMRDFSRTIVHIDMDAFYAAVEMRDNPSLKNIPMAVGGSAMLSTSNYEAR 163
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA+KLCP+L+ VPT+F KY S +++ +YDPN SLDEAYLDI
Sbjct: 164 RFGVRAAMPGFIAKKLCPDLVIVPTNFDKYRQVSKDVKEILLQYDPNMCPMSLDEAYLDI 223
Query: 209 TEVCRER--------------------GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLL 248
T+ ER G+ ++ +E+R + + LT SAG+APN +L
Sbjct: 224 TQHLAERKNFDAEQKTFRTADGEQRMFGVDAEDVVQEIRFRIEVKTQLTASAGIAPNMML 283
Query: 249 AKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ 308
AKVCSD NKPNGQ+++P +R AVM F+ LP+RK+ GIG+V+ +L G+ TC ++ +
Sbjct: 284 AKVCSDFNKPNGQYLIPFNRQAVMDFVKDLPVRKVCGIGRVSCSML-GAMGVVTCSDLFR 342
Query: 309 KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEI 368
K LL ++S + ++FL V G+GST+ + RKS+S+ERTF+ A L+ K E+
Sbjct: 343 KRGLLLKLYSAISFNYFLRVSAGVGSTSVQRGDDRKSMSTERTFAEINRPAELFAKCYEL 402
Query: 369 AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL-------QKYISSSEDILKHASVL 421
E L D++KE L+G+T+TLK+KT + VRT+A +L Q S++ D+L+ L
Sbjct: 403 CEALVEDLKKENLKGKTITLKIKTIKYIVRTKAHSLLNATQDVQLLYSTARDLLRTEIRL 462
Query: 422 LKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDIN 481
E P+ LRL+G+R++ + + S TQ T+ + +K+ G+D
Sbjct: 463 CSPE-PLRLRLMGVRMSNLSP---ASKSSDTQITIHQMLKKSRGEQKLPFGAVVSGAD-R 517
Query: 482 DDCLIDDKETSVSLDV--------------SETNNYEFGDPVCDNSLPDLND 519
++ K+ V D+ +E +N EF PVCD D D
Sbjct: 518 FLSFMEQKDPYVDEDLPGANAFPDEVPHTSTEKDNTEFICPVCDEHPEDCVD 569
>gi|260821886|ref|XP_002606334.1| hypothetical protein BRAFLDRAFT_67577 [Branchiostoma floridae]
gi|229291675|gb|EEN62344.1| hypothetical protein BRAFLDRAFT_67577 [Branchiostoma floridae]
Length = 493
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 204/462 (44%), Positives = 278/462 (60%), Gaps = 57/462 (12%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E SKGS+++ENE RKE + Q+I M R A +T Q
Sbjct: 10 KAGMEGLDKEKINKIIMEASKGSRFYENEMRKEKQMAQRISAMMDRLASITPQQQKEAQL 69
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK + +L RDLSR+ +H+DMDAFYAAVE NP+L+ KPMAVG + M+ T+NY AR
Sbjct: 70 QVDKMVEDLVEGRDLSRTIVHLDMDAFYAAVEMRDNPALRDKPMAVGGIDMLSTSNYLAR 129
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
++GVRAAMPGFI +KLCP+L+ VPT+F KY S R V +YDPNF SLDEAY+D+
Sbjct: 130 KYGVRAAMPGFIGKKLCPDLVIVPTNFDKYCAVSRQVRDVLGQYDPNFAPMSLDEAYMDL 189
Query: 209 TEVCRER--------------------------------------------------GIS 218
T+ + R G
Sbjct: 190 TDYLKLRESLPEEMRTFYAHVEGCVSKKDSSTENHDEDGMLGETQTNVKMSETSVVFGCD 249
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
E+ E+R + + LT SAG+APN +LAKVCSD NKPNGQF +P+DR A+M FI +L
Sbjct: 250 AEEVVREIRFRIEQRTRLTASAGIAPNMMLAKVCSDQNKPNGQFCIPSDRQAIMDFIRNL 309
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
P+RK+ GIGKV L + GI+TC + ++ ++L +FS ++ L V LGLG+T
Sbjct: 310 PVRKVCGIGKVMAQQL-NALGISTCTHLYEQRAVLSLLFSPVSSSHLLRVALGLGATRIE 368
Query: 339 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+ RKS+S ERTFS A LYRK E+ E L+ D+Q EGL+GRT+T+KLKT +F+V+
Sbjct: 369 RESERKSMSVERTFSELSKPADLYRKCWELCEALAKDLQDEGLKGRTITIKLKTVNFDVK 428
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIG 434
R T+ + +SS ++I A LLK E+ P+ LRL+G
Sbjct: 429 QRGQTVPRAVSSMKEIYDVAEELLKMEIQQCQPQPLRLRLMG 470
>gi|255075437|ref|XP_002501393.1| predicted protein [Micromonas sp. RCC299]
gi|226516657|gb|ACO62651.1| predicted protein [Micromonas sp. RCC299]
Length = 410
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/412 (48%), Positives = 273/412 (66%), Gaps = 3/412 (0%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVIS 84
+ N KAGM GVD+E+V+ VV E+++G ++ E RK+A ++ I M+ A L++ I
Sbjct: 1 FINHKAGMAGVDQERVKAVVKELTRGGQHHREESRKDANTEESIAKMKEMYASLSATRIR 60
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTAN 144
+ RI E+EA RDLSR+W+HVDMDAF+AA TL P L PMAVG MSMI TAN
Sbjct: 61 EIEGSVRCRIGEMEAQRDLSRTWIHVDMDAFFAACHTLERPELASVPMAVGGMSMISTAN 120
Query: 145 YEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA 204
Y AR+ GVR+AMPGF+A KLCP L+FV DF Y Y+ + R+V+ YD F SLDEA
Sbjct: 121 YVARKAGVRSAMPGFVAVKLCPALVFVRQDFELYQKYAAMLREVWRVYDKEFDCGSLDEA 180
Query: 205 YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 264
YLD+TE G+ G E+A +LR+ V + LTCSAGVAP R LAK+CSD NKPNGQFVL
Sbjct: 181 YLDVTEFMSRTGMDGGEVAAKLRSDVETKTRLTCSAGVAPTRRLAKICSDWNKPNGQFVL 240
Query: 265 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 324
R AV++F+S LP+RK+GG+GKV E L F I TC ++ Q +++ AVF+ +T DF
Sbjct: 241 ERSREAVISFLSDLPVRKVGGVGKVLEGKL-SAFQIRTCGQLRQSLNVIAAVFTPATIDF 299
Query: 325 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 384
SV LG G+ P RK + ERTF+ T D + KL +AE ++ ++QKE L+ +
Sbjct: 300 LFSVALGTGTEQRPPDAQRKGLGHERTFAPTSDPRFIEAKLHGLAEDVAKELQKENLKAQ 359
Query: 385 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGL 435
T+TLK+K ++FEV R +T+ ++++ I + A +LL+ E P +LRL+G+
Sbjct: 360 TVTLKIKKSNFEVMQRQLTVPSS-NAAKVIAEAAILLLRKERPYGALRLVGV 410
>gi|405974456|gb|EKC39099.1| DNA polymerase kappa [Crassostrea gigas]
Length = 1422
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 204/488 (41%), Positives = 294/488 (60%), Gaps = 37/488 (7%)
Query: 24 VYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVI 83
+ + KAGM G+DK ++ ++++E SKGSKYFENE +KE + ++IE + + +T +
Sbjct: 608 LLNDNKAGMSGLDKGRINQIIFEASKGSKYFENERKKEEQVTKRIEEQKQKLKAITQEHL 667
Query: 84 SHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA 143
Q AD + E + RDLSR+ +HVDMDAFYAAVE NP+L+ KPMAVG SM+ T+
Sbjct: 668 DTAQTEADLLLEEFDRLRDLSRTIVHVDMDAFYAAVEMRDNPALRDKPMAVGGNSMLSTS 727
Query: 144 NYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDE 203
NY AR+FGVRAAMPGFI +KLCPEL+ VP F KYT S R++ +DPN+ SLDE
Sbjct: 728 NYHARKFGVRAAMPGFIGKKLCPELVIVPPHFDKYTSVSKEVREILATFDPNYCTVSLDE 787
Query: 204 AYLDITE---------------VCR-----ERGISGIEIAEELRTSVYEEAGLTCS---- 239
AYLD T+ +CR ++ ++ E L SV E L
Sbjct: 788 AYLDFTDHMTKRSGLSEKERTVICRNCDSFDKSFCLCDLNETLGLSVCENGTLKVKDRPS 847
Query: 240 --AGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDV 297
G+APN +LAKVCSD+NKPNGQ+++P+ VM+FI LPIRKI GIGKV+E +L +
Sbjct: 848 DVCGIAPNMMLAKVCSDMNKPNGQYIIPSTVEDVMSFIRKLPIRKISGIGKVSERML-NA 906
Query: 298 FGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTED 357
+ TC+++ K LL ++S + ++F+ + LG+GST + RKS+S+ERTFS
Sbjct: 907 VEVKTCQDLYDKRGLLYHLYSQISFNYFMRICLGIGSTTVERDGERKSMSTERTFSEMSA 966
Query: 358 KALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKH 417
LY K E+ L+ D+Q E L+G+T+++K+KT F+V+TRA +L Y + +E I
Sbjct: 967 PTELYSKCLELCHSLAEDLQSEALKGKTVSIKIKTVKFDVKTRAFSLPDYTNDAEVIYIA 1026
Query: 418 ASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 471
A LL E+ P+ LRL+G+R++ D+ + Q TL F+ G +KI
Sbjct: 1027 AKDLLCKEMKNVHPHPLQLRLMGVRMSTLV-DQTLLSNKKQQNTLIQFVKKG---EKIGK 1082
Query: 472 DQNSLGSD 479
++ G D
Sbjct: 1083 NETHQGKD 1090
>gi|308805837|ref|XP_003080230.1| DNA-directed polymerase kappa; AtPOLK (ISS) [Ostreococcus tauri]
gi|116058690|emb|CAL54397.1| DNA-directed polymerase kappa; AtPOLK (ISS) [Ostreococcus tauri]
Length = 605
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 204/472 (43%), Positives = 297/472 (62%), Gaps = 26/472 (5%)
Query: 2 ERSDGECASSS-----------ENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKG 50
ER D + AS+S + PR ++ +V+T+AKAGM+ VD+ KV++V+Y G
Sbjct: 50 ERCDRDVASTSALTTRARNGEGDGPRE-MTFGSVFTHAKAGMETVDRAKVRRVIYGAVAG 108
Query: 51 SKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHV 110
+ + +NE RKEA ++IE MRAR +T+ K +D+R+ ELE RD SR W+ V
Sbjct: 109 TAHHQNELRKEAKTTKRIETMRARAKMMTAMEWESAGKTSDERVRELENARDTSRRWVVV 168
Query: 111 DMDAFYAAVETLSNPSLKGKPMAV--GTMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
DMD FYAA E L+NP LK P+AV G ++ TANY AR+FGVRAAMPGFIA+KLCPEL
Sbjct: 169 DMDGFYAACEELANPELKKVPVAVAAGPSCVLTTANYVARKFGVRAAMPGFIAKKLCPEL 228
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
+FV DFTKY S +R VF +Y+P+++A SLDEAY+++TE C+E + IA E+R
Sbjct: 229 VFVKPDFTKYVKASKESRSVFAQYNPDYIAGSLDEAYIEVTEYCKEHDTTMEAIAAEIRE 288
Query: 229 SV-YEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIG 287
V GLTCS G A +R LAKVCSD NKP+GQ++L R A +TF+ LP+RK+ GIG
Sbjct: 289 KVKAATGGLTCSVGGACSRRLAKVCSDFNKPDGQYILEPSREAALTFLRDLPVRKMYGIG 348
Query: 288 KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR-----F 342
K E +L + F I TC ++L K +L+ A+F+ + + + + LG+G+ P+
Sbjct: 349 KTLERVLNE-FDIETCGDLLDKRALMLALFTPKSFEHLIGIALGVGTERHPREEPDGIAP 407
Query: 343 RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAV 402
RK +S TF+ T DK L K+ E+A M++ + Q+ L+GR + +KLK ++F+V R
Sbjct: 408 RKGVSKSETFAATSDKTFLDAKMTEMATMVALECQRLNLKGRMVAVKLKRSTFDVIQRQT 467
Query: 403 TLQKYISSSEDILKHASVLLKAE----LPVSLRLIGLRVTQFNEDKVRAPSD 450
TL + + I+ A L++ E + ++LRL+G RV+QF+ ++ P D
Sbjct: 468 TLAGPTNDVKTIVNSALRLMRNENSIGVDMTLRLVGARVSQFDHEEA-VPED 518
>gi|321460481|gb|EFX71523.1| hypothetical protein DAPPUDRAFT_31218 [Daphnia pulex]
Length = 429
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 207/428 (48%), Positives = 274/428 (64%), Gaps = 14/428 (3%)
Query: 7 ECASSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQ 66
+C SS EN + + KAGM G+D K+ +++ E SKGS++++++++ + I
Sbjct: 6 KCNSSHENLSIMK-----LNDHKAGMQGLDTAKINQIIEEASKGSQFYQHKQKNQERIDA 60
Query: 67 KIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPS 126
KI +++A CAKLT + D +LE TRDLSR+ +HVDMDAFYAAVE P
Sbjct: 61 KIANLKAACAKLTEEQKKMARAKMDSLAQKLELTRDLSRTMVHVDMDAFYAAVEMRDCPE 120
Query: 127 LKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTR 186
LK KPMAVG+ SM+ T+NY ARRFGVRAAMPGFIA+KLCPEL+ VPT+F KYT S +
Sbjct: 121 LKTKPMAVGSSSMLTTSNYLARRFGVRAAMPGFIAKKLCPELVIVPTNFPKYTEVSRQVQ 180
Query: 187 KVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEI-----AEELRTSVYEEAGLTCSAG 241
KVF YDP F AASLDEAYLD+T+ R SG E+ EE+R + E LT SAG
Sbjct: 181 KVFADYDPEFSAASLDEAYLDLTDFLCARKESGAEMTASEAVEEMRAKILESTQLTASAG 240
Query: 242 VAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGIN 301
+APN +LAKVCSD NKPNGQF+L N + AV FI LPIRKI GIG VTE +L + GI+
Sbjct: 241 IAPNGMLAKVCSDKNKPNGQFILGNSKEAVDEFIKDLPIRKISGIGNVTEQLLGSL-GIS 299
Query: 302 TCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA---RFRKSISSERTFSVTEDK 358
TC ++ + LL +FS S+ D+FL V LG+GS R RKS+S E TF T D+
Sbjct: 300 TCRDLWNQRELLYLLFSESSYDYFLRVALGIGSGGGGGDGSERERKSVSCETTFRSTSDR 359
Query: 359 ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA 418
L + +++ L+ D+++ G GR++TLK KT F+V+TR L Y E + K A
Sbjct: 360 NELCDIIRQLSADLARDLERHGRLGRSVTLKYKTDKFDVKTRITQLTGYTGDGEVMAKAA 419
Query: 419 SVLLKAEL 426
+ LL + L
Sbjct: 420 TSLLPSGL 427
>gi|62319917|dbj|BAD93992.1| hypothetical protein [Arabidopsis thaliana]
Length = 402
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 209/407 (51%), Positives = 273/407 (67%), Gaps = 14/407 (3%)
Query: 272 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 331
MTF+S LP+RKIGGIGKVTEHIL+D GI TCEEM+QKGSLL A+FS S+ADFFLSVGLG
Sbjct: 1 MTFVSFLPVRKIGGIGKVTEHILKDALGIKTCEEMVQKGSLLYALFSQSSADFFLSVGLG 60
Query: 332 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
LG TNTPQ R RKSISSERTF+ T D+ LLY KL E+AEMLS DM+KEGL RTLTLKLK
Sbjct: 61 LGGTNTPQVRSRKSISSERTFAATGDERLLYSKLDELAEMLSHDMKKEGLTARTLTLKLK 120
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDP 451
TASFE+R+RAV+LQ+Y SS+DILKHA+ LLKAELPVS+RLIGLR++QF E+ +R SDP
Sbjct: 121 TASFEIRSRAVSLQRYTCSSDDILKHATKLLKAELPVSVRLIGLRMSQFVEE-IRN-SDP 178
Query: 452 TQKTLTNFMTSGHASKKI--VGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYEFGDPV 509
+Q T+T F+ +S++ + D +S D N +CL +D+ +VS ET++ D V
Sbjct: 179 SQGTITKFIVQKDSSRQAQDLDDNDSFDLDANKNCLSNDESGNVSFGSHETSSAHLKDVV 238
Query: 510 CDNSLPDLNDENCSFSNKISEVEKIHENEVSQLLEGNSLVLRQEEGSCCDGVEEVDKDIT 569
++ I E + + E Q+LEG+SL+ + +E C D +
Sbjct: 239 EYEERSQIDSGKV-----IPNQECMKKEERLQILEGDSLLKKYKE--CKPDTSHSMNDNS 291
Query: 570 PDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLR 629
+ + Q + W+D YKC LCG E+PPSF+EERQEHSDFHLA+RLQ EE+GS
Sbjct: 292 NATEAVSVFPQTEPLYWIDGYKCVLCGIELPPSFVEERQEHSDFHLAQRLQNEETGSSSS 351
Query: 630 ILTHRERCVRTQRDHIASHRKRKKQKLFEKEGTHIPIDMFFAKRNRN 676
+ R + ++ + + +K++ + HIPI FF K N+N
Sbjct: 352 TTPSKRRILGKEK---VNSKPKKQKPDQKDSSKHIPIHAFFTKSNQN 395
>gi|156378469|ref|XP_001631165.1| predicted protein [Nematostella vectensis]
gi|156218200|gb|EDO39102.1| predicted protein [Nematostella vectensis]
Length = 483
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 198/475 (41%), Positives = 290/475 (61%), Gaps = 64/475 (13%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++YE SKGS+++ENE ++E + ++I+ + + ++
Sbjct: 8 KAGMEGLDKEKINKIIYESSKGSRFYENELKREKQVNERIKRQSEKLGACSEHELAEAMV 67
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD+ + ELE+ RD+SR+ +HVDMDAFYAAVE +PSLK KPMAVG+ SM+ T+NY AR
Sbjct: 68 EADRVVQELESGRDMSRTIVHVDMDAFYAAVEMRDDPSLKDKPMAVGSTSMLSTSNYPAR 127
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
R+GVRAAMPGFIA+KLCP LI VP F KY S + R +F +YDP F+ SLDEAYLD+
Sbjct: 128 RYGVRAAMPGFIAKKLCPHLIIVPLHFDKYRAVSKIVRGIFREYDPRFVPMSLDEAYLDL 187
Query: 209 TEVCRER---------------------GISG---------------------------- 219
T+ ER G+
Sbjct: 188 TDYLIERQRKTEKRLFYKKVYRQTSPSAGVPSESESSEACGSNTAQESENVPSVAESVGE 247
Query: 220 -IEIAEELRTSVYE-------EAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 271
IE +++ V E E LT SAG+A N LLAKVC+D NKPNGQF L DR +
Sbjct: 248 PIEFGNDVKDVVQEIRFRIENETQLTASAGIACNVLLAKVCTDCNKPNGQFYLKPDREEI 307
Query: 272 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 331
++F+ +LPIRKI GIG+V+E +L+ G+ TC ++ +K LL + S ++ F + V LG
Sbjct: 308 VSFVKTLPIRKISGIGRVSEQMLK-ALGVITCADLFEKRDLLVLLHSDISSRFLIEVALG 366
Query: 332 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
LG+T R RKS+ +ERTFS + A L+ + ++ + ++ DM +EGLR +T+T+KLK
Sbjct: 367 LGATRLETDRGRKSLGTERTFSEISNPAQLFSECEQLCKAIAVDMNEEGLRPKTVTIKLK 426
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF 440
T +FE++TR+V+ ++ I+S ++++ A LL E+ P+ LRL+G+R++ F
Sbjct: 427 TINFELKTRSVSFRQGITSEKELIASAFDLLGKEIKACEPKPLKLRLMGVRLSNF 481
>gi|156345284|ref|XP_001621312.1| hypothetical protein NEMVEDRAFT_v1g231426 [Nematostella vectensis]
gi|156207107|gb|EDO29212.1| predicted protein [Nematostella vectensis]
Length = 501
Score = 369 bits (946), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 200/496 (40%), Positives = 297/496 (59%), Gaps = 65/496 (13%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++YE SKGS+++ENE ++E + ++I+ + + ++
Sbjct: 7 KAGMEGLDKEKINKIIYESSKGSRFYENELKREKQVNERIKRQSEKLGACSEHELAEAMV 66
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD+ + ELE+ RD+SR+ +HVDMDAFYAAVE +PSLK KPMAVG+ SM+ T+NY AR
Sbjct: 67 EADRVVQELESGRDMSRTIVHVDMDAFYAAVEMRDDPSLKDKPMAVGSTSMLSTSNYPAR 126
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
R+GVRAAMPGFIA+KLCP LI VP F KY S + R +F +YDP F+ SLDEAYLD+
Sbjct: 127 RYGVRAAMPGFIAKKLCPHLIIVPLHFDKYRAVSKIVRGIFREYDPRFVPMSLDEAYLDL 186
Query: 209 TEVCRER---------------------GISG---------------------------- 219
T+ ER G+
Sbjct: 187 TDYLIERQRKTEKRLFYKKVYRQTSPSAGVPSESESSEACGSNTAQESENVPSVAESVGE 246
Query: 220 -IEIAEELRTSVYE-------EAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV 271
IE +++ V E E LT SAG+A N LLAKVC+D NKPNGQF L DR +
Sbjct: 247 PIEFGNDVKDVVQEIRFRIENETQLTASAGIACNVLLAKVCTDCNKPNGQFYLKPDREEI 306
Query: 272 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLG 331
++F+ +LPIRKI GIG+V+E +L+ G+ TC ++ +K LL + S ++ F + V LG
Sbjct: 307 VSFVKTLPIRKISGIGRVSEQMLK-ALGVITCADLFEKRDLLVLLHSDISSRFLIEVALG 365
Query: 332 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
LG+T R RKS+ +ERTFS + A L+ + ++ + ++ DM +EGLR +T+T+KLK
Sbjct: 366 LGATRLETDRGRKSLGTERTFSEISNPAQLFSECEQLCKAIAVDMNEEGLRPKTVTIKLK 425
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKV 445
T +FE++TR+V+ ++ I+S ++++ A LL E+ P+ LRL+G + + +
Sbjct: 426 TINFELKTRSVSFRQGITSEKELIASAFDLLGKEIKACEPKPLKLRLMGYKAGK-RRSQG 484
Query: 446 RAPSDPTQKTLTNFMT 461
+ S P ++T+ F +
Sbjct: 485 KVGSQPKKRTMETFWS 500
>gi|443695884|gb|ELT96692.1| hypothetical protein CAPTEDRAFT_210052 [Capitella teleta]
Length = 443
Score = 364 bits (934), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 194/413 (46%), Positives = 269/413 (65%), Gaps = 14/413 (3%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM +DKE++ KV+YEMSKGSKY+ENE+RKE ++ KI + + I +
Sbjct: 7 KAGMGNLDKERINKVIYEMSKGSKYYENEQRKEEQVKAKIAAQHKQIQSFDAREIEKSEL 66
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD + +E RD SR+ +H+DMDAFYAAVE NPSLK PMAVG +M+ T+NYEAR
Sbjct: 67 QADAMLAAIEEMRDFSRTIVHIDMDAFYAAVEMRDNPSLKNIPMAVGGSAMLSTSNYEAR 126
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA+KLCP+L+ VPT+F KY S +++ +YDPN SLDEAYLDI
Sbjct: 127 RFGVRAAMPGFIAKKLCPDLVIVPTNFDKYRQVSKDVKEILLQYDPNMCPMSLDEAYLDI 186
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ ER E + RT+ E+ G+APN +LAKVCSD NKPNGQ+++P +R
Sbjct: 187 TQHLAERKNFDAE-QKTFRTADGEQRMF----GIAPNMMLAKVCSDFNKPNGQYLIPFNR 241
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
AVM F+ LP+RK+ GIG+V+ +L G+ TC ++ +K LL ++S + ++FL V
Sbjct: 242 QAVMDFVKDLPVRKVCGIGRVSCSML-GAMGVVTCSDLFRKRGLLLKLYSAISFNYFLRV 300
Query: 329 GLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 388
G+GST+ + RKS+S+ERTF+ A L+ K E+ E L D++KE L+G+T+TL
Sbjct: 301 SAGVGSTSVQRGDDRKSMSTERTFAEINRPAELFAKCYELCEALVEDLKKENLKGKTITL 360
Query: 389 KLKTASFEVRTRAVTL-------QKYISSSEDILKHASVLLKAELPVSLRLIG 434
K+KT + VRT+A +L Q S++ D+L+ L E P+ LRL+G
Sbjct: 361 KIKTIKYIVRTKAHSLLNATQDVQLLYSTARDLLRTEIRLCSPE-PLRLRLMG 412
>gi|449683767|ref|XP_002159424.2| PREDICTED: DNA polymerase kappa-like [Hydra magnipapillata]
Length = 640
Score = 362 bits (928), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 195/460 (42%), Positives = 286/460 (62%), Gaps = 22/460 (4%)
Query: 23 TVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPV 82
T+ + KAGM ++KEK+ +++YE SKGSK++ENE RKE I++KIE + K +
Sbjct: 50 TLLNDNKAGMLDLNKEKINQIIYEASKGSKFYENEIRKENKIKEKIEQLNNELLKFSDNE 109
Query: 83 ISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICT 142
I + ++ +L+ DL+R +H+DMDAFYAAVE NP L+ PMAVG +M+ T
Sbjct: 110 IKNALVQSNFIYDQLKKQIDLTRILVHIDMDAFYAAVEMRDNPELQSIPMAVGCSAMLST 169
Query: 143 ANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLD 202
+NY ARR+GVRAAMPGFIA+KLCP+L VP F KY S +++F +YD N++ SLD
Sbjct: 170 SNYIARRYGVRAAMPGFIAKKLCPQLTIVPLHFEKYQQVSLEIQEIFKEYDSNYLQLSLD 229
Query: 203 EAYLDITEVCRERG-ISGIE--------IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCS 253
EAYLD+T+ + +S + + EE+R+ V+E+ LTCSAG+APN +L+K+CS
Sbjct: 230 EAYLDLTDYIKNNAPVSEFQTEKDFVEIVVEEIRSKVFEKTKLTCSAGIAPNTMLSKICS 289
Query: 254 DINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLL 313
D NKPNGQF L +D + F+ +LPIRKI GIG VTE IL+ F I TC ++ +K ++L
Sbjct: 290 DFNKPNGQFYLKSDYQIISNFVKALPIRKIVGIGHVTEQILKS-FKILTCNDLYEKRNIL 348
Query: 314 CAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLS 373
+FS ST F+ LG+ S Q+ RKS+S ERTF + L + ++AE L+
Sbjct: 349 YLLFSESTFMSFMQTALGISSNRLEQSE-RKSMSVERTFQDMSNIEDLLKVCKDVAENLA 407
Query: 374 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP------ 427
D+ +E L GRT++LK K ++F + R+ T + IS++ED+ + LL E+
Sbjct: 408 NDLSREKLGGRTISLKYKLSTFVTKQRSKTFSELISNAEDLFTISKELLLNEIKNHKNGG 467
Query: 428 VSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASK 467
LRL+G+RVT + K + QKT+ +F + +K
Sbjct: 468 FVLRLLGIRVTHLDNQK-----NFKQKTVDHFFNNDLFNK 502
>gi|198425156|ref|XP_002120223.1| PREDICTED: similar to polymerase (DNA directed), kappa [Ciona
intestinalis]
Length = 706
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 188/463 (40%), Positives = 281/463 (60%), Gaps = 40/463 (8%)
Query: 17 PWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCA 76
P Q + KAGM G+DKEK+ K++ + + GS++++NE+++E + +I+ M+ +
Sbjct: 18 PAQLTRMSLNDNKAGMQGLDKEKINKIIMDNTVGSRFYKNEQKREQQVNARIQKMKEKLN 77
Query: 77 KLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT 136
TS I ++ A++ + E+E RDLSR+ +H+DMDAFYAAVE P LK KPMAVG
Sbjct: 78 SFTSNQIMTAKQHAEEILSEVENQRDLSRTIIHIDMDAFYAAVEERDRPELKQKPMAVGG 137
Query: 137 MSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNF 196
M M+ T+NY AR++GVRAAMPGFIA+KLCP LI VPT+F KY S T+++F +YD NF
Sbjct: 138 MDMLSTSNYVARKYGVRAAMPGFIAKKLCPNLIIVPTNFDKYREVSKETQEIFSEYDENF 197
Query: 197 MAASLDEAYLDITEVCRER----------------------------------GISGIEI 222
SLDEA+LDIT+ ++R G S E+
Sbjct: 198 CGMSLDEAFLDITDHLQKRLIYDQEERTFHYHPTLAPTTTSEDTDDKKSSETFGFSAEEV 257
Query: 223 AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRK 282
A+E+R + ++ LT SAG+APN +LAK+ SD+NKPNGQ +R +M FI P+RK
Sbjct: 258 AKEIRFRIQQKTLLTASAGIAPNTMLAKIGSDLNKPNGQTFFAPNRDEIMKFIKDFPVRK 317
Query: 283 IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARF 342
+ GIGKVTE +L + G+ C ++ + + L +FS ++ FF + LG S
Sbjct: 318 VNGIGKVTEQLLSSL-GVQKCGDIYEMRAELMLLFSATSCSFFFRMCLGCSSNILEPDGE 376
Query: 343 RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAV 402
RKSIS+ERTFS ++ L+ KL E+ L+ADM+K+ ++G+TLTLK K F++ TR+
Sbjct: 377 RKSISTERTFSTISNRDELFAKLDELCHSLAADMKKQNVQGKTLTLKTKNVDFQLHTRSK 436
Query: 403 TLQKYISSSEDILKHASVLLKAEL-----PVSLRLIGLRVTQF 440
T+ +++ + I A LLK E+ +SLRL+G+ +++
Sbjct: 437 TINVPMTNYQTIFPVAQELLKQEILNANNKLSLRLMGVGLSKL 479
>gi|156046767|ref|XP_001589745.1| hypothetical protein SS1G_09467 [Sclerotinia sclerotiorum 1980]
gi|154693862|gb|EDN93600.1| hypothetical protein SS1G_09467 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 562
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 195/454 (42%), Positives = 279/454 (61%), Gaps = 20/454 (4%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
K+G D VD+ KV +++Y SKGSKYF +EE ++ + KIE + A+ +L ++H ++
Sbjct: 28 KSGQDSVDQSKVSEIIYNASKGSKYFNHEEERDKTLTVKIERILAKKVELEKLDLAHDRR 87
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD I ELE TRDLS++ +H+D DAFYAAVE L P LK P +VG ++ T NY AR
Sbjct: 88 RADTAIAELELTRDLSQTIVHIDCDAFYAAVEELDRPELKNVPFSVGK-GVVTTCNYHAR 146
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVR+AM GFIA+KLCP+LI VP +F KYT + R + YDP F +AS+DEAYL+I
Sbjct: 147 RFGVRSAMAGFIAKKLCPQLIQVPLNFDKYTAKAQEVRGILVDYDPRFESASIDEAYLNI 206
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
TE C++ I E+LR V+E+ +T SAG+A N +AK+CS+ NKPNGQ+ +PNDR
Sbjct: 207 TEYCQKNDIDPEAAVEQLRREVHEKTKVTISAGIAANAKIAKICSNKNKPNGQYRVPNDR 266
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
+ +M F+ LP RK+ GIG+V E L G++TC ++ L +F T F +
Sbjct: 267 IEIMRFMRDLPTRKVNGIGRVFEREL-GAIGVDTCGDIYNVRQYLPKLFGDKTFIFLMQC 325
Query: 329 GLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T+ A RKS+ +E TF +D L KL + AE L DMQ+ +GRTL
Sbjct: 326 YLGLGRTDVKPAEEYTRKSVGTESTFGDMDDPTELRAKLRQTAEELEKDMQRTQFKGRTL 385
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNE 442
LK+K ++EV TR K + S++D+ ++ + L+AE+P +SLRL+GLR T N
Sbjct: 386 VLKVKLKTYEVLTRQAAPSKAVCSADDLYTYSLPMLEKLEAEIPGMSLRLMGLRCT--NL 443
Query: 443 DKVRAP----------SDPTQKTLTNFMTSGHAS 466
++ P DPT+ ++N+ + +S
Sbjct: 444 VSIKKPDTMAFFGFRKQDPTENGISNYESKSFSS 477
>gi|409080276|gb|EKM80636.1| hypothetical protein AGABI1DRAFT_55621 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 619
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 189/448 (42%), Positives = 276/448 (61%), Gaps = 12/448 (2%)
Query: 26 TNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEH-MRARCAKLTSPVIS 84
++ KAG+ D+ ++ +++ E+SKGSK++ENE+R++ + ++I + R + IS
Sbjct: 28 SSGKAGLAN-DQSEINRIIAEVSKGSKFYENEKRRDKELTERINKILNIRDEVVKGVDIS 86
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTAN 144
+ D+ + E E+ RDL++ +HVDMDAFYA+VE L+NP LKGKP +++ TA+
Sbjct: 87 KIEANVDRLLAEFESQRDLTQIIVHVDMDAFYASVELLNNPELKGKPFG----AILSTAS 142
Query: 145 YEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA 204
YEAR++GVR+ M GF+A+KLCP+LI +P FT Y SD +F +YDPN + A DE
Sbjct: 143 YEARKYGVRSGMAGFVAKKLCPDLILIPEHFTTYMETSDQVMSIFKRYDPNMLIAGCDEG 202
Query: 205 YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 264
YL+IT C E +S + +E+R V+EE LT SAG+APN++LAK+CSD NKPNGQF L
Sbjct: 203 YLNITLHCEEHSVSAADCVQEMRRIVFEETKLTVSAGIAPNKMLAKICSDRNKPNGQFQL 262
Query: 265 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 324
DR ++ F+ L +RK+ GIG+V E +L + GI TC ++ + + + +
Sbjct: 263 IPDRKTILAFMRELSVRKVFGIGRVNERLLESI-GIKTCGDIFTHRATIALMDKQFGLHY 321
Query: 325 FLSVGLGLGSTNT--PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 382
L LG+ S PQ RKSI SERTFS +D +L +KL IA L DM + G
Sbjct: 322 LLKTYLGISSNEVRPPQREERKSIGSERTFSPLDDGEVLLQKLEHIASELETDMARNGWA 381
Query: 383 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 442
G+T+TLK K +++V TRA +L +Y+SS ED+ L AE + LRLIGLRVT+ +
Sbjct: 382 GKTITLKYKLDTYQVFTRAKSLDRYVSSKEDLFSIGRKLFLAEGHLKLRLIGLRVTKLKD 441
Query: 443 DKVRAPSDPTQKTLTNFMT-SGHASKKI 469
+RAPS K T S H +K+
Sbjct: 442 --LRAPSPAGIKKFFEATTSSAHTRRKL 467
>gi|378725578|gb|EHY52037.1| DNA polymerase kappa subunit [Exophiala dermatitidis NIH/UT8656]
Length = 732
Score = 353 bits (906), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 189/418 (45%), Positives = 263/418 (62%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+++V +++YE SKGSK+F NEE K+ + KIE + A+L + +
Sbjct: 59 KAGQDAVDQKRVSEIIYEASKGSKFFNNEEAKDKNLTTKIERILKHKAQLEKLDLKSDLR 118
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD I LE +RDLS+ +H+D DAFYAAVE + P LK PMAVG + ++ T NYEAR
Sbjct: 119 RADDYIASLELSRDLSQYVVHIDCDAFYAAVEEIDRPELKNVPMAVG-VGVLTTCNYEAR 177
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+AM GF+A+KLCP+LI +P +F KYT + R + +YDP F +AS+DEAYL+I
Sbjct: 178 KFGCRSAMAGFVAKKLCPQLICLPLNFDKYTAKAKEVRAILAEYDPRFESASIDEAYLNI 237
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
TE C I E+LR V+E+ +T SAG+APN LAK+CS+ NKPNGQF LPNDR
Sbjct: 238 TEYCHTHDIDPDAAVEQLRGEVHEKCQITISAGIAPNAKLAKICSNKNKPNGQFRLPNDR 297
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
AVM+FIS+LP+RK+ G+G+V E L D GI TC ++ + L +F F +
Sbjct: 298 AAVMSFISTLPVRKVNGVGRVFEREL-DAIGIKTCGDIYPHRAYLNRLFGEKAFQFLMQT 356
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
+GLG T P + RKS+ +E TF K L KL AE L DM++ G++GRTL
Sbjct: 357 YMGLGRTVVQPAEEYERKSVGTESTFREMSGKQELREKLRHTAEELEKDMERVGVKGRTL 416
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
LK+K ++EV TR V + + +ED+ ++ + L+ ++P LRL+GLR T
Sbjct: 417 VLKVKLHTYEVFTRQVAPPRAVHRAEDLYTYSLPMLAKLEKDIPDFRLRLMGLRCTHL 474
>gi|240977912|ref|XP_002402838.1| DNA polymerase IV / kappa, putative [Ixodes scapularis]
gi|215491234|gb|EEC00875.1| DNA polymerase IV / kappa, putative [Ixodes scapularis]
Length = 487
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 204/475 (42%), Positives = 284/475 (59%), Gaps = 22/475 (4%)
Query: 28 AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQ 87
+KAG++GVDK++V K++ SKG+ Y+E++++++ I +IE M A A+LT + +
Sbjct: 9 SKAGLEGVDKDRVNKIIQAASKGTPYYEHQQKRQQRINLRIESMLAELAQLTPTQLQASE 68
Query: 88 KVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMIC-TANYE 146
+ D + ++E +RDLSR +HVDMDA++AAVE +PSLK KPMA S + T+NYE
Sbjct: 69 QKMDALVEKMECSRDLSRIVVHVDMDAYFAAVEMRDDPSLKDKPMAQAPFSFLASTSNYE 128
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
AR+FGVRAAMPGFI +KLCP L+ V +F KY+ S RKV +YD +FM LDEAYL
Sbjct: 129 ARKFGVRAAMPGFIGKKLCPSLLIVRPNFNKYSSVSAEVRKVMARYDEDFMPVGLDEAYL 188
Query: 207 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 266
DIT+ +I E+R ++E LT A +APN LAKVCSDI KPN QF LPN
Sbjct: 189 DITDHVNATDADPEDIVREMRKKIFEATQLT--ARIAPNMFLAKVCSDIRKPNNQFRLPN 246
Query: 267 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 326
D AV F+ SLPIRK+ GIG V E +LR G TC ++ K + + +F ++A F+L
Sbjct: 247 DINAVREFVRSLPIRKVPGIGAVQEQLLR-ALGAQTCHDLWVKRAAIGHLFGMTSARFYL 305
Query: 327 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T KS S E TFS L K E+ E L ++ +G+ GR +
Sbjct: 306 RAALGLGCTEVKCDSACKSKSVEETFSELSSPEALVSKCEELCEQLCEQVEDDGITGRVV 365
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-------PVSLRLIGLRVTQ 439
TLK+KT +F+V TR+VTL + E I K A LL+ E+ P+ LRL+G+R++
Sbjct: 366 TLKIKTVAFDVMTRSVTLDSATNRIEPIKKAALRLLRQEIAAAKPDCPLRLRLMGVRLSG 425
Query: 440 FNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSD----IN---DDCLID 487
N+ A S +Q TL++F+ SG + +LGS +N D CL D
Sbjct: 426 LNDG---ASSSASQPTLSSFL-SGRTATTCPVCGKTLGSSSSEFVNAHLDSCLRD 476
>gi|145348411|ref|XP_001418642.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578872|gb|ABO96935.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 427
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 186/427 (43%), Positives = 272/427 (63%), Gaps = 13/427 (3%)
Query: 20 SYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLT 79
SY +V+T+AKAGM+ VD+E+V +VVY+ + G+ + ENE RKE ++I M+A+ +T
Sbjct: 1 SYGSVFTHAKAGMENVDRERVARVVYDATVGTPHHENETRKERATSKRIAAMKAKGQGMT 60
Query: 80 SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV--GTM 137
+ + AD+R +E TR +R WL VDMD FYAA E L +P+LK P+ V G
Sbjct: 61 KTEWETFGRRADERARAMERTRSGARKWLVVDMDGFYAACEELYDPALKSVPVGVAAGPS 120
Query: 138 SMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFM 197
S++ TANY AR++GVRAAMPGFIA+KLCP+L+FV DF KY S+ +R VF +Y+P+++
Sbjct: 121 SVLTTANYVARKYGVRAAMPGFIAKKLCPDLVFVKPDFKKYVKASNESRGVFAQYNPDYI 180
Query: 198 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEE-AGLTCSAGVAPNRLLAKVCSDIN 256
A SLDEAY+++TE C + + IAEE+R+ V E GLTCS G +R LAKVCSD N
Sbjct: 181 AGSLDEAYIEVTEYCEKHDTTMEAIAEEIRSKVKEATGGLTCSVGGGCSRRLAKVCSDFN 240
Query: 257 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 316
KPNGQ++L R ++ F+ LP+RK+ GIGK E IL + F I TC ++L K + + A+
Sbjct: 241 KPNGQYILGTTRDDILKFLRDLPVRKMYGIGKTLERILNE-FDIKTCGDLLAKRATMLAL 299
Query: 317 FSHSTADFFLSVGLGLGSTNTPQ-----ARFRKSISSERTFSVTEDKALLYRKLAEIAEM 371
F+ DF L + LG+G+ P+ + RK +S TF T DKA L K+ E+A
Sbjct: 300 FTPKAFDFLLGIALGIGTECHPRETPEGSGGRKGVSKSETFKATADKAYLDAKMTELATE 359
Query: 372 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--- 428
++ + Q+ L+GR + +KLK ++F+V R TL + + I+ A L++ E +
Sbjct: 360 VALECQRLNLKGRMVAVKLKRSTFDVIQRQTTLAGPTNDVKTIVNSALRLMRNENSIGAN 419
Query: 429 -SLRLIG 434
+LRL+G
Sbjct: 420 MTLRLVG 426
>gi|325179727|emb|CCA14130.1| DNA polymerase kappa putative [Albugo laibachii Nc14]
Length = 614
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 201/508 (39%), Positives = 280/508 (55%), Gaps = 41/508 (8%)
Query: 24 VYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVI 83
V+T KAGM V+ E ++K VYEMSK S +F+N + + Q+I+ M+ + AKLT P I
Sbjct: 60 VFTAEKAGMADVNAEHLRKTVYEMSKDSVFFKNSMKNNDKVDQRIKQMQEQVAKLTQPKI 119
Query: 84 SHYQKVADKRI-LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICT 142
+ D+ + L+LE RDL+R + +DMD FYAAVE NP L+ P+AVG++ MI T
Sbjct: 120 RFLEARIDEIVALQLECRRDLTRIKVVIDMDMFYAAVEMRDNPILRHVPLAVGSIGMIST 179
Query: 143 ANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLD 202
NYEAR+FGVR+AMPGFI +KLCP+L+F P KY+ + R++F YDPNF A SLD
Sbjct: 180 TNYEARKFGVRSAMPGFIGKKLCPDLVFTPVRMEKYSAIAQEIRQIFAVYDPNFTAFSLD 239
Query: 203 EAYLDITEVCRE-------------------------RGISGIEIAE------------E 225
EA LD+T+ RE R G E+ E E
Sbjct: 240 EAALDLTDYTREHWRKYVSQLSLKDWNHDGWMQDCETRQEGGHEMPESLTMKIASAIVSE 299
Query: 226 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGG 285
+R ++EE LT SAG+A N +LAK+CS+I KPNGQF L + ++ FI LP+RK+GG
Sbjct: 300 IRQRIFEETQLTASAGIAVNTMLAKICSNIEKPNGQFALEGSKEVILEFIRELPVRKVGG 359
Query: 286 IGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKS 345
IGKV E IL I T +E+ + ++L VF TA + L LG+ + RKS
Sbjct: 360 IGKVMEKILA-ALNITTMQEVFDRRAVLFHVFKERTATWLLRTCLGIQEQQSESE--RKS 416
Query: 346 ISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQ 405
S E TF D L + A I E L+ D+ ++ + R +TLKLK A F VRTR+VTL
Sbjct: 417 YSRETTFKAVSDFESLKQICASICEHLAQDLAEDNVAARNITLKLKCADFSVRTRSVTLN 476
Query: 406 KYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHA 465
I S + +L+ A LLK E+P+SLRL+G+R R ++ QK
Sbjct: 477 TSIQSCKRLLQVALDLLKREMPISLRLLGIRAASLIPSVQREETNQVQKRQLTIQDCKMT 536
Query: 466 SKKIVGDQNSLGSDINDDCLIDDKETSV 493
++ + G+ + L +D +V
Sbjct: 537 TEGALDSMKDFGAQEEESALSNDSNKNV 564
>gi|380492100|emb|CCF34847.1| impB/mucB/samB family protein [Colletotrichum higginsianum]
Length = 639
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 189/449 (42%), Positives = 275/449 (61%), Gaps = 13/449 (2%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y SKGSK+F EE ++ + +KIEH+ + +L + +
Sbjct: 37 KAGQDSVDQSKVSEIIYNASKGSKFFNREEERDKVLTKKIEHILEKKRQLEKQDLGRELR 96
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+AD+ I +LE +RDL++ +HVD DAFYAAVE L P LK P AVG ++ T NY AR
Sbjct: 97 LADQLITQLELSRDLTQYVVHVDCDAFYAAVELLDRPELKDVPFAVGG-GVLTTCNYVAR 155
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
++G R+ M GF+A+KLCPEL+ + +F KYT + R+V +YDP F +AS+DEAYL+I
Sbjct: 156 KYGCRSGMAGFVAKKLCPELVMLKLNFEKYTAKAHEVREVLVEYDPRFESASIDEAYLNI 215
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
TE C E+GI E E++R ++E+ +T SAG+A N LAK+CS++NKPNGQF+LPNDR
Sbjct: 216 TEYCTEKGIGPAEAVEQMRREIHEKTKITVSAGIAANAKLAKICSNMNKPNGQFILPNDR 275
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
++ F++ LP RK+ GIG+V E L ++ GINTC ++ + L +F +F L+V
Sbjct: 276 SEILRFMAKLPPRKVNGIGRVLERQLAEI-GINTCADLYPQRQFLRPLFGDKAYEFLLNV 334
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T P + RKS+ +E TF D L KL A+ L DM++ ++GRTL
Sbjct: 335 YLGLGRTRIQPAEEYERKSVGTESTFRDMSDPQQLREKLRWTADELEKDMKRAEVKGRTL 394
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLRLIGLRVTQFNE 442
LK+K ++EV TR V L + I ++D+ + +L + E+P ++LRL+GLR T
Sbjct: 395 VLKVKLHTYEVFTRQVVLPRAICLADDLYHFSLPILSKIEEEMPGMTLRLMGLRCTHLVS 454
Query: 443 DKVRAPSDPTQKTLTNFMTSGHASKKIVG 471
K P F + G S G
Sbjct: 455 TK-----KPDTMAFFGFRSRGSGSAASPG 478
>gi|384497743|gb|EIE88234.1| hypothetical protein RO3G_12945 [Rhizopus delemar RA 99-880]
Length = 524
Score = 349 bits (896), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 183/429 (42%), Positives = 264/429 (61%), Gaps = 34/429 (7%)
Query: 27 NAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHY 86
N AG+ VDK K+ K++YE SKGS +FENE++K+ + ++I + ++ + +S
Sbjct: 34 NTNAGLGNVDKGKINKIIYEASKGSAFFENEKKKDEMVTKRINAILSKYEHVKRQDLSFE 93
Query: 87 QKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYE 146
+++ DK I +LE TRDL++ HVDMDAFYA+VE L NP LK +PMAVG MSM+CT+NYE
Sbjct: 94 KRIVDKMIEDLEQTRDLTQCICHVDMDAFYASVEELENPELKKQPMAVGGMSMLCTSNYE 153
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
AR++GVR+AMPGFIA KLCP+L +P F KY S+ R VF KYDPNFM SLDEAYL
Sbjct: 154 ARKYGVRSAMPGFIALKLCPQLKMIPLHFPKYIGASNKVRAVFAKYDPNFMPMSLDEAYL 213
Query: 207 DITEVC-RERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 265
++TE +E ++ E+ E++R ++E LT SA
Sbjct: 214 NLTEYLKKEPDLTPYELVEQIRREIFESTQLTASA------------------------- 248
Query: 266 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF 325
DR +++ F+ L +R+I G+G+VTE +L + G++TC ++ K ++L + S F
Sbjct: 249 -DRTSIVNFVKDLKVRQIPGVGRVTERVL-ESLGVHTCGDIYPKRAILYKLLSPINFQFL 306
Query: 326 LSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 385
L +GLG+T RKS+ ERTF+ D A LY KL E+ E L D +K G+ GR
Sbjct: 307 LKCYMGLGTTMFNTESERKSVGVERTFTSLSDPAKLYEKLHELCEALEKDAEKAGVMGRN 366
Query: 386 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQF----- 440
+ +K+K SFEVR R+ TL Y+SS++DI K A LL E+P+ LRL+G+R+
Sbjct: 367 IGIKIKFVSFEVRIRSRTLPSYVSSAKDIEKVAKQLLANEMPMDLRLMGVRLANLKPRGS 426
Query: 441 -NEDKVRAP 448
+E ++AP
Sbjct: 427 NDESVLKAP 435
>gi|452989492|gb|EME89247.1| hypothetical protein MYCFIDRAFT_213583 [Pseudocercospora fijiensis
CIRAD86]
Length = 663
Score = 348 bits (892), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 193/441 (43%), Positives = 272/441 (61%), Gaps = 14/441 (3%)
Query: 21 YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKL- 78
YH + + K+G DGVD++KV +++Y SKGSKYF NEE K+ + KI + AR L
Sbjct: 46 YHLLGPSLTKSGQDGVDQKKVSEIIYNASKGSKYFNNEENKDKTLTIKINSILARKRDLQ 105
Query: 79 ---TSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG 135
+ + K AD I ELE +R+LS++ +H+D DAFYAAVE L +P LK P AVG
Sbjct: 106 RVEAAGGLKKELKKADDYITELEYSRNLSQAIVHIDCDAFYAAVEELDHPELKNVPFAVG 165
Query: 136 TMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPN 195
++ T NYEAR+FG R+ M GF+A KLCP+LI +P +F KYT + R V +YDP
Sbjct: 166 K-GVLTTCNYEARKFGCRSGMAGFVADKLCPQLIHIPLNFEKYTAKAKEVRAVLEQYDPR 224
Query: 196 FMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
F +AS+DEAYL+IT C E IS + ++R V+EE +T SAG+A N LAK+CS+
Sbjct: 225 FESASIDEAYLNITNYCEEHNISPEDAVSQMRAQVFEETMITISAGIAANAKLAKICSNK 284
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 315
NKPNGQF L ++R A+M F+ LP RK+ GIG+V E L D G+ TC ++ ++ L A
Sbjct: 285 NKPNGQFKLASERTAIMNFMRDLPTRKVNGIGRVLEREL-DAIGVKTCGDIYEQRHYLNA 343
Query: 316 VFSHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLS 373
+F T +F + V LGLG T+ P A + RKS+ +E TF D L KL + AE L
Sbjct: 344 LFGDKTFEFLIGVHLGLGKTDVRPAAEYERKSVGTESTFHDMSDPKELRDKLRKTAEELE 403
Query: 374 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VS 429
D+Q+ +GRTL LK+K ++EV TR + K + +++D+ + +L+ E P +
Sbjct: 404 KDLQRTEFKGRTLCLKIKLHTYEVFTRQIQPPKAVHTADDLYHYGLAMLQKLEKEFPGMK 463
Query: 430 LRLIGLRVTQFNEDKVRAPSD 450
LRL+GLR T K + P+D
Sbjct: 464 LRLMGLRCTHLVSMK-KGPTD 483
>gi|336384514|gb|EGO25662.1| hypothetical protein SERLADRAFT_437387 [Serpula lacrymans var.
lacrymans S7.9]
Length = 890
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 182/437 (41%), Positives = 270/437 (61%), Gaps = 9/437 (2%)
Query: 26 TNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEH-MRARCAKLTSPVIS 84
+ KAG+ D+ ++ +++ E SKGSK+++NE+RK+ + ++I ++ R IS
Sbjct: 265 STTKAGL-AKDQSEINRIIAEASKGSKFYDNEKRKDKELTERINKILKQRDDARQGVDIS 323
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTAN 144
+K D + +LE+ RDLS+ +HVDMDAFYA VE L NP LKGKP VG ++ TA+
Sbjct: 324 QIEKSTDHTLDQLESHRDLSQVIVHVDMDAFYANVELLHNPELKGKPFGVGA-GVLSTAS 382
Query: 145 YEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA 204
Y+AR++GVR+ MPGFIA+KLCPELI V +FT+Y SD +F +YDPN +AA DE
Sbjct: 383 YDARKYGVRSGMPGFIAKKLCPELILVNINFTRYQEMSDKVMDIFRRYDPNMLAAGCDEG 442
Query: 205 YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 264
YL+IT C E + +E+R V++E LT SAG+APN++LAK+CSD NKPNGQF L
Sbjct: 443 YLNITAYCEEHNLDPQACVQEMRAFVHKETNLTVSAGIAPNKMLAKICSDKNKPNGQFYL 502
Query: 265 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 324
P DR ++ +F+ LPIR+I G+G+V E +L D GI TC ++ + L + F
Sbjct: 503 PFDRESIKSFMQDLPIRRIPGVGRVNERLL-DAIGIKTCGDIYTHRATLSLMDKQFGLQF 561
Query: 325 FLSVGLGLGSTNT-PQARFRKSISSE----RTFSVTEDKALLYRKLAEIAEMLSADMQKE 379
L + LG+ S P R + I+S RTFS D+ + KL E+A L D ++
Sbjct: 562 LLRIHLGIASNVVEPGKREERKIASAKVHFRTFSTLSDRQQILNKLEEVAAELEDDTERN 621
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ 439
G G+T+TLK K +++V TRA + ++IS+ +D L L P+S+RLIGLR+T+
Sbjct: 622 GWTGKTVTLKYKLNTYQVYTRAKSFDRWISTKKDDLLAIGKELLPSHPLSIRLIGLRITK 681
Query: 440 FNEDKVRAPSDPTQKTL 456
+ + +P+ ++ L
Sbjct: 682 LKDLRSSSPAGGIKRFL 698
>gi|310795414|gb|EFQ30875.1| impB/mucB/samB family protein [Glomerella graminicola M1.001]
Length = 635
Score = 347 bits (889), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 194/467 (41%), Positives = 280/467 (59%), Gaps = 19/467 (4%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y SKGSK+F EE ++ + KIE + + L +S +
Sbjct: 37 KAGQDAVDQSKVSEIIYNASKGSKFFNREEERDKILTNKIEQIINKKRDLEKQDLSRELR 96
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+AD+ I +LE +RDL++ +HVD DAFYAAVE L P LK P AVG ++ T NY AR
Sbjct: 97 LADQLITQLELSRDLTQYIVHVDCDAFYAAVELLDRPELKDVPFAVGG-GVLTTCNYVAR 155
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
++G R+ M GF+A+KLCPEL+ + +F KYT + R+VF +YDP F +AS+DEAYL+I
Sbjct: 156 KYGCRSGMAGFVAKKLCPELVMLKLNFEKYTAKAHEVREVFVEYDPRFESASIDEAYLNI 215
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
TE C ++GI E E++R +YE+ +T SAG+A N LAK+CS++NKPNGQF+LPNDR
Sbjct: 216 TEYCTDKGIGPAEAVEQMRREIYEKTKITVSAGIAANAKLAKICSNMNKPNGQFILPNDR 275
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
++ F++ LP RK+ G+G+V E L ++ GI TC ++ + L +F +F ++V
Sbjct: 276 SEILRFMAKLPPRKVNGVGRVLERQLAEI-GIKTCADLYPQRQFLRPLFGEKAYEFLINV 334
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T P + RKS+ +E TF D L KL A L DM++ ++GRTL
Sbjct: 335 YLGLGRTRIQPAEEYERKSVGTESTFRDMSDPQQLREKLKWTAGELEKDMKRAEVKGRTL 394
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNE 442
LK K ++EV TR V L + I ++D+ A + L+ E+P ++LRL+GLR T
Sbjct: 395 VLKAKLHTYEVLTRQVVLPRAIFLADDLYHFALPILAKLQEEMPGMTLRLMGLRCTHLVS 454
Query: 443 DKVRAPSDPTQKTLTNFMT----SGHASKKIVGDQNSLGSD--INDD 483
K P F + SG + K D + G D +NDD
Sbjct: 455 TK-----KPDTMAFFGFRSRRSESGTSPVKPSKDNVNAGVDSGLNDD 496
>gi|342878410|gb|EGU79753.1| hypothetical protein FOXB_09715 [Fusarium oxysporum Fo5176]
Length = 643
Score = 345 bits (886), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 186/418 (44%), Positives = 260/418 (62%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y SKGSK+F EE ++ + QKIE + AR A+L ++ +
Sbjct: 58 KAGQDTVDQTKVSEIIYNASKGSKFFNREEERDKVLTQKIEQIIARKAQLEKRDLTRDLR 117
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD+ I ELE TRDL++ +HVD DAFYAAVE L P +K P AVG ++ T NY AR
Sbjct: 118 NADRLIAELELTRDLTQHIVHVDCDAFYAAVEQLDRPEIKDLPFAVGG-GVLTTCNYVAR 176
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M GF+A+KLCP LI + +F KY + R+V YDP F +AS+DEAYL+I
Sbjct: 177 KFGCRSGMAGFVAKKLCPSLILLKPNFQKYNAKAHEVREVLVNYDPRFESASIDEAYLNI 236
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
TE C+E + E E++R V+E+ +T SAG+A N LAK+CS++NKPNGQ+VL +DR
Sbjct: 237 TEYCQEHQMDPAEAVEQMRREVHEKTNITVSAGIAANAKLAKICSNMNKPNGQYVLSSDR 296
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
+M F+ LP RK+ GIG+V E L ++ GI TC + + L +F T++F +
Sbjct: 297 PTIMAFMRDLPTRKVNGIGRVLERELLEI-GIKTCGDFYEHRQYLNPLFGDKTSEFLFTC 355
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T P + RKS+ +E TF D L KL AE L DM++ +GRTL
Sbjct: 356 YLGLGRTKIQPAEEYERKSVGTESTFRDMSDPTQLREKLRATAEELEQDMKRAECKGRTL 415
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
LK+K +FEV TR V L + I ++D+ +A + L+ E+P + LRL+GLR T
Sbjct: 416 CLKVKLHTFEVLTRQVVLPRAICLADDLYNYALPILTKLEQEIPGMKLRLMGLRCTHL 473
>gi|70982554|ref|XP_746805.1| DNA-directed polymerase kappa [Aspergillus fumigatus Af293]
gi|66844429|gb|EAL84767.1| DNA-directed polymerase kappa, putative [Aspergillus fumigatus
Af293]
gi|159122955|gb|EDP48075.1| DNA-directed polymerase kappa, putative [Aspergillus fumigatus
A1163]
Length = 614
Score = 345 bits (885), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 194/480 (40%), Positives = 286/480 (59%), Gaps = 21/480 (4%)
Query: 2 ERSDGECASSSE---NPRPWQSYHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENE 57
E SDG + S+ N YH + + KAG D VD+ KV +++Y+ SKGSK+F +E
Sbjct: 6 EESDGNGRAPSKEASNKDETLKYHLLGPSLTKAGQDAVDQRKVSEIIYDASKGSKFFHHE 65
Query: 58 ERKEAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYA 117
+ ++ + KIE + A+L ++H + AD+ I ELE+TRDLS+ +HVD DAF+A
Sbjct: 66 QTRDRILTAKIERILKEKARLEKLDLTHDLRKADELIAELESTRDLSQYVVHVDCDAFFA 125
Query: 118 AVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTK 177
AVE L P LK PMAVG ++ T NYEAR++G R+ M F+A+KLCP+LI +P ++ K
Sbjct: 126 AVEELDRPELKTVPMAVGK-GVLTTCNYEARKYGCRSGMASFVAKKLCPQLICLPQNYEK 184
Query: 178 YTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLT 237
YT + R +F +YDP F +AS+DEAYL+IT C E + E +R + E ++
Sbjct: 185 YTAKAQEIRVIFAQYDPLFESASIDEAYLNITSYCTENNLDPEEAVSRMRAEILETTKIS 244
Query: 238 CSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDV 297
SAG+A N +AK+CS+ NKPNGQF +PN+R A+M F+ +LP+RK+ G+G+V E L D
Sbjct: 245 VSAGIAANAKVAKICSNRNKPNGQFRVPNEREAIMEFMRTLPVRKVNGVGRVFEREL-DA 303
Query: 298 FGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVT 355
GI TC ++ + +LL +F F + LGLG T P + RKS+ +ERTFS
Sbjct: 304 IGIKTCGDIYPQRALLTRLFGEKAFHFLMQCFLGLGRTQIQPVENYERKSVGTERTFSEI 363
Query: 356 EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 415
DK LL KL + A+ L D+ + +GRTL LK+K A+FEV +R + +S ++D+
Sbjct: 364 GDKQLLREKLWDTAQELEKDLARAECKGRTLVLKVKLATFEVLSRQCQPPRAVSLAKDLY 423
Query: 416 KHASVL---LKAELP-VSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 471
+ + L+ E+P + LRL+GLR T T+K NF + S+ + G
Sbjct: 424 AFSLPMLAKLEKEIPNMKLRLLGLRCTNLVS---------TKKVDINFFGAASQSRSVAG 474
>gi|390602278|gb|EIN11671.1| IMS-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 608
Score = 345 bits (884), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 191/443 (43%), Positives = 273/443 (61%), Gaps = 11/443 (2%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEH-MRARCAKLTSPVISHYQ 87
KAG+ D+ ++ +++ E+SKGSK++ENE+RK+ + +KIE ++ R L I +
Sbjct: 34 KAGL-AKDQSEINRIIAEVSKGSKFYENEKRKDKELTEKIEKILKERDELLKQADIPSIE 92
Query: 88 KVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEA 147
+ D+ I ELEA RDLS+ +HVDMDAF+A VE L NP+L GKP VG ++ TA+YEA
Sbjct: 93 RGVDRLINELEAERDLSQVIVHVDMDAFFANVEMLDNPALAGKPFGVG-HGVLTTASYEA 151
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FGVR+ M GF+A+KLCPELI VP +Y+ S VF YDPN +AAS DE YL+
Sbjct: 152 RKFGVRSGMAGFVAKKLCPELILVPIHHERYSEISQRIMTVFRDYDPNMLAASCDEGYLN 211
Query: 208 ITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 267
IT C E + E +++R V+EE LT SAG+APN++LAK NKPNGQ+ LP +
Sbjct: 212 ITSYCAEHDLDPDECVQQMRKRVHEEIKLTVSAGIAPNKMLAK-----NKPNGQYHLPFE 266
Query: 268 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLS 327
R + F+ LPIRKI GIG+V+E +L D G+ TC ++ + L + H + + L
Sbjct: 267 RTEIRDFMRDLPIRKIPGIGRVSERLL-DSIGVKTCGDIYPHRATLSLLDKHFSLHWLLQ 325
Query: 328 VGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 385
LG+ S P +R RKSI +ERTF+ ++ L +KL E+A L DM + G G+T
Sbjct: 326 TYLGIASNVVQPGSREERKSIGAERTFNPISNREKLLQKLDEVAHELEEDMTRGGWVGKT 385
Query: 386 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKV 445
+TLK K +S++V TRA + ++IS +D+ LL + P+ LRLIGLRVT+ + +
Sbjct: 386 ITLKYKLSSYQVFTRAKSFDRWISKKDDLFSARKELLLNDWPLELRLIGLRVTKLKDLRA 445
Query: 446 RAPSDPTQKTLTNFMTSGHASKK 468
D K +SG AS +
Sbjct: 446 EEQGDAGIKRFLKPASSGPASPR 468
>gi|347833303|emb|CCD49000.1| similar to DNA-directed polymerase kappa [Botryotinia fuckeliana]
Length = 637
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 183/418 (43%), Positives = 262/418 (62%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
K+G D VD+ KV +++Y SKGSKYF +EE ++ + KIE + + A+L ++H ++
Sbjct: 28 KSGQDSVDQSKVSEIIYNASKGSKYFNHEEERDKTLTVKIERILGKKAELEKLDLAHDRR 87
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD I ELE TRDL+++ +H+D DAFYAAVE L P LK P +VG ++ T NY AR
Sbjct: 88 RADTAIAELELTRDLTQTIVHIDCDAFYAAVEELDRPELKNVPFSVGK-GVVTTCNYHAR 146
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVR+AM GFIA+KLCP+LI VP +F KYT + R++ YDP F +AS+DEAYL+I
Sbjct: 147 RFGVRSAMAGFIAKKLCPQLIQVPLNFDKYTAKAQEVREILVDYDPRFESASIDEAYLNI 206
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
TE C++ I E+LR V+E+ +T SAG+A N +AK+CS+ NKPNGQ+ + N+R
Sbjct: 207 TEYCQKNDIDPEAAVEQLRREVHEKTKVTISAGIAANAKIAKICSNYNKPNGQYRVANNR 266
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
+ +M F+ LP RK+ GIG+V E L G+ TC ++ L +F F +
Sbjct: 267 VEIMKFMRDLPTRKVNGIGRVFEREL-GAIGVKTCGDIYNVRHYLPKLFGEKAFIFLMQC 325
Query: 329 GLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T+ A RKS+ +E TF+ D L KL AE L D+Q+ +GRTL
Sbjct: 326 YLGLGRTDVKPAEEYTRKSVGTEGTFNDINDATELRSKLRHTAEELEKDLQRTQFKGRTL 385
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
LK+K ++EV TR K + S++D+ K++ + L+AE+P ++LRL+GLR T
Sbjct: 386 VLKVKLKTYEVLTRQAAPPKAVFSADDLYKYSLPMLEKLEAEMPGLTLRLMGLRCTNL 443
>gi|348688715|gb|EGZ28529.1| hypothetical protein PHYSODRAFT_552269 [Phytophthora sojae]
Length = 608
Score = 344 bits (883), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 190/445 (42%), Positives = 261/445 (58%), Gaps = 34/445 (7%)
Query: 24 VYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVI 83
V+T KAGM GVDK+ VQ+VV++MSK S +++ R ++Q++ MR + A LT
Sbjct: 3 VFTADKAGMKGVDKQHVQEVVHKMSKDSSFYQKSLRDNEKVEQRVAAMRKKLAGLTGGQQ 62
Query: 84 SHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA 143
Q+ AD+R+ +EATRDLS++ + VDMD FYAAVE +P L P+AVG M+MI T
Sbjct: 63 LRLQQEADERVARMEATRDLSKTIVVVDMDMFYAAVEMRDDPKLCDVPLAVGGMNMISTT 122
Query: 144 NYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDE 203
NY AR+FGVRAAMPGFI ++LCPEL FVP + KY + R VF +YDPNF A SLDE
Sbjct: 123 NYAARQFGVRAAMPGFIGKELCPELHFVPVNMEKYAGVAAQVRAVFAQYDPNFEAFSLDE 182
Query: 204 AYLDITEVCRERGISGIEIA--------------------------------EELRTSVY 231
A LD+T+ + +A ELR ++
Sbjct: 183 ACLDLTDYVAKNWQKYASVALDDFESKEEVQEEEEQWPSTPAGRAAIAAAVVRELRQKIF 242
Query: 232 EEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTE 291
+ LT SAG+A N +LAK+CSD+NKPNGQ+VLP R V+TF+ LP+RKIGGIGKVTE
Sbjct: 243 DCTQLTASAGIAVNAMLAKICSDMNKPNGQYVLPFTRERVLTFLCDLPVRKIGGIGKVTE 302
Query: 292 HILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERT 351
IL + G++T E+ + + +F+ TA + L LG+ Q RKS S ERT
Sbjct: 303 KILNEALGVHTGGELFNQRGKIFHLFTEKTAVWLLQTSLGVRERREKQE--RKSFSRERT 360
Query: 352 FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSS 411
F D L K E+ +ML+ D++K + +T K F +R+VTL I ++
Sbjct: 361 FRSLSDPKELEAKCLEVCKMLAKDLEKANKAAKNVTFVYKDTDFARCSRSVTLASAIFTA 420
Query: 412 EDILKHASVLLKAELPVSLRLIGLR 436
ED+ A LL+ ELP++LRL+G+R
Sbjct: 421 EDLYSSAVELLRRELPLTLRLLGVR 445
>gi|302908670|ref|XP_003049920.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730856|gb|EEU44207.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 639
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 184/418 (44%), Positives = 260/418 (62%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y SKGSK+F EE ++ + +KIE + AR L ++ +
Sbjct: 56 KAGQDKVDQSKVSEIIYNASKGSKFFNREEVRDKVLTRKIEQIIARKTALEKKDLTRDLR 115
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD+ I ELE TRDL++ +HVD DAFYAAVE L P LK P AVG ++ T NY AR
Sbjct: 116 NADRLIAELELTRDLTQHIVHVDCDAFYAAVEQLDRPELKDLPFAVGG-GVLTTCNYIAR 174
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M GF+A+KLCP LI + +F KY + R+V YDP F +AS+DEAYL+I
Sbjct: 175 KFGCRSGMAGFVAKKLCPSLILLKPNFEKYNAKAQEVREVLVNYDPRFESASIDEAYLNI 234
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
TE C+E + E E++R+ V+E +T SAG+A N LAK+CS++NKPNGQ+VLP+DR
Sbjct: 235 TEYCQEHQMDPAEAVEQMRSEVHERTNITVSAGIAANAKLAKICSNMNKPNGQYVLPSDR 294
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
+M F+ LP RK+ G+G+V E L ++ GI TC ++ + + +F T++F
Sbjct: 295 PTIMAFMRDLPTRKVNGVGRVLERELLEI-GIKTCGDLYAQRQFINPLFGDKTSEFLFKC 353
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T P + RKS+ +E TF D L KL AE L DM++ +GRTL
Sbjct: 354 YLGLGRTKIQPAEEYERKSVGTESTFRDMSDPTQLRDKLRWTAEELEKDMKRAECKGRTL 413
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
LK+K +FEV TR V L + I ++D+ +A + L+ ++P + LRL+GLR TQ
Sbjct: 414 CLKVKLHTFEVFTRQVVLPRAIWLADDLYSYALPILSRLEQDMPGMKLRLMGLRCTQL 471
>gi|340518175|gb|EGR48417.1| hypothetical protein TRIREDRAFT_107805 [Trichoderma reesei QM6a]
Length = 649
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 184/429 (42%), Positives = 265/429 (61%), Gaps = 11/429 (2%)
Query: 21 YHTVYTN-AKAGMDGVDKEKVQ--KVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAK 77
YH + + KAG D VD+ K Q +++Y SKGSK+F EE ++ + QKIE + AR K
Sbjct: 40 YHLLGPSLTKAGQDKVDQSKAQVSEIIYNASKGSKFFNREEERDKILTQKIEQILARKKK 99
Query: 78 LTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM 137
L ++ + AD+ + ELE +RDL++ +H+D DAF+AAVE L P LK P AVG
Sbjct: 100 LEQQDLTRDLRNADRLLAELELSRDLTQHIVHLDCDAFFAAVEQLDRPDLKDVPFAVGG- 158
Query: 138 SMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFM 197
++ T NY AR+FG R+ M GF+A+KLCP+L+ + +F KY ++ R V YDP F
Sbjct: 159 GVLTTCNYAARQFGCRSGMAGFVAKKLCPQLVLIKPNFHKYGAKAEEVRAVLANYDPRFE 218
Query: 198 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 257
+AS+DEAYL+ITE C + I + E++R V+E+ +T SAG+A N LAK+CS+INK
Sbjct: 219 SASIDEAYLNITEYCDQHDIDPAAVVEQMRIEVHEKTNITVSAGIAANARLAKICSNINK 278
Query: 258 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 317
PNGQ+VLP DR A+M F+ LP RK+ G+G+V E L ++ G+ TC ++ ++ L +F
Sbjct: 279 PNGQYVLPRDRSAIMAFMRDLPTRKVNGVGRVLERELLEI-GVKTCGDIYEQRQYLHRLF 337
Query: 318 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 375
T++F LGLG T P + RKS+ +E TF D L KL AE L D
Sbjct: 338 GDKTSEFLFRCYLGLGRTKIQPAEEYERKSVGTESTFHDMSDPVQLRNKLRSTAEALEQD 397
Query: 376 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 431
M++ +GRTL +K+K +FEV TR V L K I +ED+ ++ + L+ E+P + LR
Sbjct: 398 MRRSECKGRTLCIKIKLHTFEVFTRQVILPKSIYLAEDLYNYSLPMLAKLEHEMPGMKLR 457
Query: 432 LIGLRVTQF 440
L+GLR T
Sbjct: 458 LMGLRCTNL 466
>gi|451852315|gb|EMD65610.1| hypothetical protein COCSADRAFT_86898 [Cochliobolus sativus ND90Pr]
Length = 610
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 190/446 (42%), Positives = 268/446 (60%), Gaps = 18/446 (4%)
Query: 11 SSENPRPWQS---------YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERK 60
S E P P ++ YH + + KAG D VD+ KV ++Y SKGSK+F NEE K
Sbjct: 6 SPERPLPARTPSTEHESLKYHLLGPSLTKAGQDSVDQSKVSDIIYNASKGSKFFNNEEAK 65
Query: 61 EAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVE 120
+ + KIE + A+ L ++ + AD I ELE +RDL++ +H+D DAFYAAVE
Sbjct: 66 DKNLTDKIEKILAKRRHLDKLDLTSDLRKADDYIAELELSRDLTQIVVHLDCDAFYAAVE 125
Query: 121 TLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTY 180
L P LK P AVG ++ T NY AR+FG R+ M GF+A KLCP+LI VP +F KY
Sbjct: 126 ELDRPELKDVPFAVGK-GVLTTCNYHARKFGCRSGMAGFVAMKLCPQLICVPMNFQKYMA 184
Query: 181 YSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSA 240
++ R+V YDPNF AS DEAYL++T+ C E ++G E ++R VYE+A +T SA
Sbjct: 185 KAEEVRQVLALYDPNFENASCDEAYLNLTKYCNEHHMTGEEAVSQMRADVYEKAKITVSA 244
Query: 241 GVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI 300
G+A N LAK+CS+INKPNGQF+LP+DR +M F+ +LP RK+ GIG+V E L D G+
Sbjct: 245 GIAANAKLAKICSNINKPNGQFLLPSDRQTIMEFMKTLPTRKVNGIGRVFEREL-DAIGV 303
Query: 301 NTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR--FRKSISSERTFSVTEDK 358
TC ++ + L +F F + LGLG T +A RKS+ +E TF +
Sbjct: 304 KTCGDIYAHRACLAKLFGQKAFQFLMQCYLGLGRTVIKRAEDYERKSVGTETTFKELQSP 363
Query: 359 ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA 418
L KL +AE L D+++ +GRTL +K+K ++EV TR T + +ED+ K++
Sbjct: 364 DALREKLRFVAEELEGDLKRTEYKGRTLCIKIKLHTYEVHTRQTTPPFAVHKAEDLYKYS 423
Query: 419 SVLLK---AELP-VSLRLIGLRVTQF 440
+L+ E+P + LRL+GLRVT
Sbjct: 424 LPMLEKLMKEIPNMRLRLMGLRVTHI 449
>gi|393217821|gb|EJD03310.1| DNA/RNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 600
Score = 342 bits (876), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 266/421 (63%), Gaps = 19/421 (4%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG+ D+ ++ +++ E+SKGSK++ENE+RK+ + ++I A+ K+ V
Sbjct: 29 KAGL-AKDQTEINRIIAEVSKGSKFYENEKRKDKELTERI----AKILKIKDDV------ 77
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
V I ELEA RDLS++ +HVDMDAFYA+VE L NP L+GKP V + ++ TA+YEAR
Sbjct: 78 VKSANIQELEAERDLSQAIVHVDMDAFYASVELLLNPDLEGKPFGV-CLGVLSTASYEAR 136
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+ GVR+ M GF+A+KLCPELI +P +F KY+ S +F +YDP + A DE YL+I
Sbjct: 137 KHGVRSGMAGFVAKKLCPELIVIPVNFEKYSEMSRKVMSIFKEYDPTMIVAGCDEGYLNI 196
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ C + GIS + +E+R V+EE LT SAG+A N K+CSD NKPNGQF LP++R
Sbjct: 197 TKYCAQHGISPEDCVKEMRQKVHEETKLTASAGIASN----KICSDKNKPNGQFALPSER 252
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+ F+ L IRK+ G+G+V E +L D G+ TC ++ +++ + + + F S
Sbjct: 253 DAITAFMRDLSIRKLPGVGRVHERLL-DSIGVKTCGDIYAHRAVIWLMDHYFSKIFLYSA 311
Query: 329 GLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LG+ S P R RKSI +ERTF+ D L KL E+AE L DM+ G G+T+
Sbjct: 312 YLGIASNVVEPYQRDERKSIGAERTFTPISDHEKLLEKLEEVAEELENDMRDNGWAGKTV 371
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 446
TLK K +++V TRA + ++I+ ED+ LLK ELP+ LRLIGLRVT+ + + R
Sbjct: 372 TLKYKLNTYQVYTRAKSFNRWITRKEDLFNTGKELLKPELPLCLRLIGLRVTKLKDLRAR 431
Query: 447 A 447
A
Sbjct: 432 A 432
>gi|119488628|ref|XP_001262764.1| DNA-directed polymerase kappa, putative [Neosartorya fischeri NRRL
181]
gi|119410922|gb|EAW20867.1| DNA-directed polymerase kappa, putative [Neosartorya fischeri NRRL
181]
Length = 614
Score = 342 bits (876), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 186/458 (40%), Positives = 277/458 (60%), Gaps = 18/458 (3%)
Query: 21 YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLT 79
YH + + KAG D VD+ KV +++Y+ SKGSK+F +E+ ++ + KIE + A+L
Sbjct: 28 YHLLGPSLTKAGQDAVDQRKVSEIIYDASKGSKFFHHEQTRDIILTAKIERILKEKARLE 87
Query: 80 SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
++H + AD+ + ELE TRDLS+ +HVD DAF+AAVE L P LK PMAVG +
Sbjct: 88 KLDLTHDLRKADELMAELELTRDLSQYVVHVDCDAFFAAVEELDRPELKTVPMAVGK-GV 146
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T NYEAR++G R+ M F+A+KLCP+LI +P ++ KYT + R +F +YDP F +A
Sbjct: 147 LTTCNYEARKYGCRSGMASFVAKKLCPQLICLPQNYEKYTAKAQEIRAIFAQYDPLFESA 206
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
S+DEAYL+IT C E + E +R + E ++ SAG+A N +AK+CS+ NKPN
Sbjct: 207 SIDEAYLNITSYCTENNLDPEEAVSRMRAEILETTKISVSAGIAANAKIAKICSNRNKPN 266
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 319
GQF +PN+R A+M F+ +LP+RK+ G+G+V E L D GI TC ++ + +LL +F
Sbjct: 267 GQFRVPNEREAIMEFMRTLPVRKVNGVGRVFEREL-DAIGIKTCGDIYPQRALLTRLFGE 325
Query: 320 STADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 377
F + LGLG T P + RKS+ +ERTF+ DK LL KL + A+ L D+
Sbjct: 326 KAFHFLIQCFLGLGRTQVQPVENYERKSVGTERTFNEIGDKQLLREKLWDTAQELEKDLA 385
Query: 378 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLI 433
+ +GRTL LK+K A+FEV +R + +S ++D+ + + L+ E+P + LRL+
Sbjct: 386 RTECKGRTLVLKVKLATFEVLSRQCQPPRAVSLAKDLYAFSLPMLAKLEKEIPNMKLRLL 445
Query: 434 GLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 471
GLR T T+K NF + S+ + G
Sbjct: 446 GLRCTNLVS---------TKKVDINFFGAASQSRSVAG 474
>gi|429857424|gb|ELA32293.1| DNA-directed polymerase [Colletotrichum gloeosporioides Nara gc5]
Length = 650
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 182/418 (43%), Positives = 262/418 (62%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y SKGSK+F EE ++ + +KIE + + +L +S +
Sbjct: 49 KAGQDSVDQSKVSEIIYNASKGSKFFNREEERDKILTKKIEQILEKKRRLEKLDLSRDLR 108
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+AD+ I +LE +RDLS+ +HVD DAFYAAVE L P LK P +VG ++ T NY AR
Sbjct: 109 LADQLITQLELSRDLSQYIVHVDCDAFYAAVELLERPELKDVPFSVGA-GVLTTCNYVAR 167
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
++G R+ M GF+A+KLCP L+ + +F KY + R+V +YDP F +AS+DEAYL+I
Sbjct: 168 KYGCRSGMAGFVAKKLCPSLVMLKPNFEKYNAKAHEVREVLVEYDPRFESASIDEAYLNI 227
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
TE C E+ IS + E++R V+E +T SAG+A N LAK+CS++NKPNGQFVLPNDR
Sbjct: 228 TEYCTEKDISPADAVEQMRREVHERTNITVSAGIAANAKLAKICSNMNKPNGQFVLPNDR 287
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
+M F++ LP RK+ GIG+V E L ++ GI TC ++ L +F +F ++V
Sbjct: 288 TEIMNFMAKLPPRKVNGIGRVLERQLAEI-GIKTCADIYPYRQFLRQLFGEKAYEFLINV 346
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T P + RKS+ +E TF D L KL A+ L DM++ +GRTL
Sbjct: 347 YLGLGRTRIQPAEEYERKSVGTESTFRDMSDPQQLREKLRWTADELEKDMKRAECKGRTL 406
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
LK+K ++EV TR V L + I ++D+ + A + L+ E+P + LRL+GLR T
Sbjct: 407 VLKVKLHTYEVFTRQVVLPRAICLADDLYRFALPILGKLEEEMPEMKLRLMGLRCTHL 464
>gi|346971729|gb|EGY15181.1| DNA polymerase kappa [Verticillium dahliae VdLs.17]
Length = 630
Score = 341 bits (874), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 178/427 (41%), Positives = 269/427 (62%), Gaps = 9/427 (2%)
Query: 21 YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLT 79
YH + + KAG D VD+ KV +++Y SKGSKYF EE K+ + QKI+ + + +L
Sbjct: 19 YHLLGPSLTKAGQDSVDQNKVSEIIYNASKGSKYFNREEVKDKILTQKIDQILQKKRRLD 78
Query: 80 SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
+ ++ + A++ I ELE +RDL++ +H+D DAFYAAVE L P L+ P AVG +
Sbjct: 79 TLDLTRELRQANQLITELEISRDLTQHIVHIDCDAFYAAVELLDRPELEHLPFAVGG-GV 137
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T NY AR+FG R+ M GF+A+KLCP+LIF+ +F KY + R++ YDP F +A
Sbjct: 138 LTTCNYVARKFGCRSGMAGFVAKKLCPQLIFIKLNFDKYIAKAQEVREIIAHYDPRFESA 197
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
S+DEAYL+ITE C + IS + +++R ++E+ +T SAG+A N LAK+CS++NKPN
Sbjct: 198 SIDEAYLNITEYCSAKAISPEDAVQQMRREIHEKTKITVSAGIAANAKLAKICSNMNKPN 257
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 319
GQ++LP+DR ++M F++SLP RK+ G+G+V E L ++ G+ TC E+ + L +F
Sbjct: 258 GQYLLPSDRASIMKFMASLPPRKVNGVGRVLERQLAEI-GVTTCGEIYEYRQYLNQLFGQ 316
Query: 320 STADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 377
+F + LGLG T P + RKS+ +E TF D L KL A+ L DM+
Sbjct: 317 KAYEFLIHCYLGLGRTKIQPAEEYERKSVGTESTFHDMSDPTQLTEKLRWTADELEKDMK 376
Query: 378 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLI 433
+ ++GRTL LK+K ++EV TR V K I ++D+ H+ + L+ E+P + LRL+
Sbjct: 377 RAEVKGRTLVLKIKLHTYEVFTRQVVTPKSICLADDLFSHSLPILIKLQQEMPDMKLRLM 436
Query: 434 GLRVTQF 440
GLR+T
Sbjct: 437 GLRMTHL 443
>gi|339243265|ref|XP_003377558.1| DNA polymerase kappa [Trichinella spiralis]
gi|316973633|gb|EFV57197.1| DNA polymerase kappa [Trichinella spiralis]
Length = 844
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 191/487 (39%), Positives = 285/487 (58%), Gaps = 69/487 (14%)
Query: 27 NAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHY 86
+ KAGM+G+DKE + ++ + SKGS+++E++ ++++ I ++++ M+A K+ + I +
Sbjct: 250 DTKAGMEGLDKEAINALIRQWSKGSRFYEHQLKRKSRIDERLKKMQASVEKMGAMEIHNS 309
Query: 87 QKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYE 146
+ D+ + LE+ RD + + HVDMDAFYAAVE N SL+ PMAVG+ SM+ T+NYE
Sbjct: 310 ELKMDRVVAMLESNRDFTHTIFHVDMDAFYAAVEMRDNRSLRNIPMAVGSNSMLSTSNYE 369
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
AR+FGVRAAMPGFI +KLCP+L VP +F KY+ S + + YDPN +ASLDEAY+
Sbjct: 370 ARKFGVRAAMPGFIGKKLCPQLTIVPCNFEKYSAISREVKNILKLYDPNLCSASLDEAYM 429
Query: 207 DIT----------------------------------------------EVCRERGISGI 220
D+T E+C E G I
Sbjct: 430 DVTEYLVLRQSQNTPVFHRSVHYTGECDCRWPYKYLPCCVLRESTKISSEICNECGKLCI 489
Query: 221 -------------EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 267
E+A E+R V + GLTCS G+APN +LAK+ SDINKPNGQF + D
Sbjct: 490 HVEDEVAFGNNAEEVAREIRFLVEQATGLTCSIGIAPNSMLAKLGSDINKPNGQFHMRAD 549
Query: 268 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLS 327
R ++ F+ +LPIRK+ GIG VTE +L + G++TC E+ Q+ +L FS +A FL
Sbjct: 550 RNFIVDFLRNLPIRKVCGIGAVTEALLNGL-GVSTCGELYQRRGILALAFSERSAISFLR 608
Query: 328 VGLGLG---STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 384
+ LG+ + RKSIS+ERTFS + + L ++ LS D+ + L+G+
Sbjct: 609 ISLGIDDEFCDKDDEVASRKSISTERTFSEISEPSRLLAVCRKLCNSLSEDVIERNLKGK 668
Query: 385 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVT 438
T+TLK+KT F+VRTRA T+ +Y+ ++++I AS LL+ E+ P+ LRL+G+R++
Sbjct: 669 TVTLKVKTIDFDVRTRANTVDRYVQAADEIYNIASSLLQEEIRARLPNPLRLRLMGVRLS 728
Query: 439 QFNEDKV 445
E KV
Sbjct: 729 TLQESKV 735
>gi|346322241|gb|EGX91840.1| DNA-directed polymerase kappa [Cordyceps militaris CM01]
Length = 641
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 187/427 (43%), Positives = 261/427 (61%), Gaps = 9/427 (2%)
Query: 21 YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLT 79
YH + + KAG D VD+ KV +++Y SKGSK+F EE ++ + QKIE + R +L
Sbjct: 46 YHLLGPSLTKAGQDSVDQNKVSEIIYNASKGSKFFNREEERDKVLTQKIERILRRKKELD 105
Query: 80 SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
S ++H + AD+ I ELEA+RDL++ +H+D DAFYAAVE L P LK P AVG +
Sbjct: 106 SLDLTHERLSADRLITELEASRDLTQHIVHIDCDAFYAAVEQLDRPELKDLPFAVGG-GV 164
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T NY AR FG R+ M GF+A+KLCP+L+ + +F KYT R V YD F +A
Sbjct: 165 LTTCNYLAREFGCRSGMAGFVAKKLCPQLVLIKPNFEKYTAKGKEVRGVLADYDARFESA 224
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
S+DEAYL+ITE C +S E+ E+LR V+E+ +T SAG+A N LAK+CS++NKPN
Sbjct: 225 SIDEAYLNITEYCVTHNMSAPEVVEQLRKEVHEKTNITVSAGIAANSRLAKICSNLNKPN 284
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 319
GQ+VL +R +MTFI LP RKI GIG+V E L +V GI C ++ + L +F
Sbjct: 285 GQYVLGRERNEIMTFIRDLPTRKIPGIGRVLERELLEV-GIKNCGDIYEHRQYLHRLFGD 343
Query: 320 STADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 377
T +F + LGLG T+ P + RKS+ +E TF D L KL AE L DM+
Sbjct: 344 KTFEFLMGCYLGLGRTSIQPAEEYERKSVGTESTFREISDPKKLREKLRATAEDLEGDMK 403
Query: 378 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLI 433
+ +GRTL LK+K +FEV TR V + + ++D+ + + L+ E+P + LRL+
Sbjct: 404 RAACKGRTLCLKIKLHTFEVYTRQVVTPRALCLADDLYNFSLPMLTKLEQEMPGMKLRLM 463
Query: 434 GLRVTQF 440
GLR T
Sbjct: 464 GLRCTHL 470
>gi|330919708|ref|XP_003298724.1| hypothetical protein PTT_09519 [Pyrenophora teres f. teres 0-1]
gi|311327928|gb|EFQ93167.1| hypothetical protein PTT_09519 [Pyrenophora teres f. teres 0-1]
Length = 637
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 186/427 (43%), Positives = 262/427 (61%), Gaps = 9/427 (2%)
Query: 21 YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLT 79
YH + + KAG D VD+ KV +++Y SKGSK+F NEE K+ + +KI + A+ +L
Sbjct: 29 YHLLGPSLTKAGQDSVDQTKVAEIIYNASKGSKFFNNEETKDKNLTEKITKILAKRQQLD 88
Query: 80 SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
++ + AD I ELE +RDLS+ +H+D DAFYAAVE L P LK P AVG +
Sbjct: 89 KLDLTSDLRRADDYIAELELSRDLSQVVVHLDCDAFYAAVEELDRPELKHVPFAVGK-GV 147
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T NY AR+FG R M GF+A KLCP+LI VP +F KY ++ R+V YDP F +A
Sbjct: 148 LLTCNYHARKFGCRPGMAGFVAMKLCPQLICVPMNFPKYMAKAEEVRQVLALYDPGFESA 207
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
S DEAYL++TE C+E ++ E ++R VYE+A +T SAG+A N LAK+CS+INKPN
Sbjct: 208 SCDEAYLNLTEYCKEHHLTPEEAVSQMRAHVYEKAKITVSAGIAANAKLAKICSNINKPN 267
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 319
GQF+LP+DR +M F+ +LP RK+ GIG+V E L D G+ TC ++ + L +F
Sbjct: 268 GQFLLPSDRQTIMEFMRTLPTRKVNGIGRVFEREL-DAIGVKTCGDIYAHRAYLVKLFGQ 326
Query: 320 STADFFLSVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 377
F LGLG T +A RKSI +E TF + + KL IAE L D++
Sbjct: 327 KAFQFLTQCYLGLGRTAIKRAEDYERKSIGTETTFKELQSPDAIRDKLRYIAEELEGDLK 386
Query: 378 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLI 433
+ +GRTL +K+K ++EV TR T + ++D+ K++ +L+ E+P + LRLI
Sbjct: 387 RTEYKGRTLCIKIKLHTYEVHTRQTTPPFAVHKADDLYKYSLPMLEKLMKEIPNMKLRLI 446
Query: 434 GLRVTQF 440
GLRVT
Sbjct: 447 GLRVTHI 453
>gi|189201936|ref|XP_001937304.1| DNA polymerase kappa [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187984403|gb|EDU49891.1| DNA polymerase kappa [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 626
Score = 339 bits (870), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 185/427 (43%), Positives = 264/427 (61%), Gaps = 9/427 (2%)
Query: 21 YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLT 79
YH + + KAG D VD+ KV +++Y SKGSK+F NEE K+ + +KI + A+ +L
Sbjct: 29 YHLLGPSLTKAGQDSVDQTKVSEIIYNASKGSKFFNNEEAKDKNLTEKISKILAKRKQLD 88
Query: 80 SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
++ + AD I ELE +RDLS+ +H+D DAFYAAVE L P LK P AVG +
Sbjct: 89 KLDLTSDLRRADDYIAELELSRDLSQVVVHLDCDAFYAAVEELDRPELKDVPFAVGK-GV 147
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T NY AR+FG R+ M GF+A KLCP+LI VP +F KY ++ R+V YDP F +A
Sbjct: 148 LTTCNYHARKFGCRSGMAGFVAMKLCPQLICVPMNFQKYMAKAEEVRQVLALYDPGFESA 207
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
S DEAYL++TE C+E ++ E ++R V+E+A +T SAG+A N LAKVCS+INKPN
Sbjct: 208 SCDEAYLNLTEYCKEHHLTPEEAVSQMRADVFEKAKITVSAGIAANAKLAKVCSNINKPN 267
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 319
GQF+LP+DR +M F+ +LP RK+ GIG+V E L D G+ TC ++ + L +F
Sbjct: 268 GQFLLPSDRQTIMEFMRTLPTRKVNGIGRVFEREL-DAVGVKTCGDIYAHRACLAKLFGQ 326
Query: 320 STADFFLSVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 377
F + LGLG T +A RKS+ +E TF + L KL IAE L D++
Sbjct: 327 KAFQFLMQCYLGLGRTVIKRAEDYERKSVGTETTFKELQSPDALRGKLRYIAEELEGDLK 386
Query: 378 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLI 433
+ +GRTL +K+K ++EV TR T + ++D+ K++ +L+ E+P + LRL+
Sbjct: 387 RTEYKGRTLCIKIKLHTYEVHTRQTTPPFAVHKADDLYKYSLPMLEKLMKEIPSMKLRLM 446
Query: 434 GLRVTQF 440
GLRVT
Sbjct: 447 GLRVTHI 453
>gi|358381543|gb|EHK19218.1| hypothetical protein TRIVIDRAFT_69218 [Trichoderma virens Gv29-8]
Length = 643
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 184/429 (42%), Positives = 265/429 (61%), Gaps = 11/429 (2%)
Query: 21 YHTVYTN-AKAGMDGVDKEKVQ--KVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAK 77
YH + + KAG D VD+ K+Q +++Y SKGSK+F EE ++ + +KIE + +R K
Sbjct: 38 YHLLGPSLTKAGQDKVDQSKIQVSEIIYNASKGSKFFNREEERDKILTKKIEQILSRKNK 97
Query: 78 LTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM 137
L ++ + AD+ + ELE +RDL++ +H+D DAF+AAVE L P LK P AVG
Sbjct: 98 LEQQDLTRDLRNADRLLAELELSRDLTQYIVHLDCDAFFAAVELLERPDLKDVPFAVGG- 156
Query: 138 SMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFM 197
++ T NY AR+FG R+ M GF+A+KLCP+LI + +F KY + R V YDP F
Sbjct: 157 GVLTTCNYVARQFGCRSGMAGFVAKKLCPQLILIKPNFHKYGAKAQEVRAVIANYDPRFE 216
Query: 198 AASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 257
+AS+DEAYL+ITE C E + + E++R V+E+ +T SAG+A N LAK+CS+INK
Sbjct: 217 SASIDEAYLNITEYCDEHNMDPAAVVEQMRKEVHEKTSITVSAGIAANARLAKICSNINK 276
Query: 258 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 317
PNGQ+VLP DR ++M F+ LP RK+ GIG+V E L ++ G+ TC ++ ++ L +F
Sbjct: 277 PNGQYVLPRDRNSIMAFMRDLPTRKVNGIGRVLERELLEI-GVKTCGDLYEQRQYLNRLF 335
Query: 318 SHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSAD 375
+ F L LGLG T P + RKS+ +E TF D A L KL AE L D
Sbjct: 336 GEKYSVFLLRCYLGLGRTKIQPAEEYERKSVGTESTFHDISDPAKLRDKLRSTAEALEKD 395
Query: 376 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLR 431
++K +GRTL +K+K +FEV TR V L K I +ED+ ++ + L+ E+P + LR
Sbjct: 396 LKKNECKGRTLCIKIKLHTFEVYTRQVVLPKSIHLAEDLYNYSLPMLAKLEQEMPGMRLR 455
Query: 432 LIGLRVTQF 440
L+GLR T
Sbjct: 456 LMGLRCTHL 464
>gi|358390626|gb|EHK40031.1| hypothetical protein TRIATDRAFT_42536 [Trichoderma atroviride IMI
206040]
Length = 630
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 183/427 (42%), Positives = 263/427 (61%), Gaps = 9/427 (2%)
Query: 21 YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLT 79
YH + + KAG D VD+ KV +++Y SKGSK+F EE ++ + +KI+ + +R KL
Sbjct: 26 YHLLGPSLTKAGQDKVDQSKVSEIIYNASKGSKFFSREEFRDKILTKKIDQILSRKKKLE 85
Query: 80 SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
++ + AD+ + ELE +RDL++ +H+D DAF+AAVE L P LK P AVG +
Sbjct: 86 QQDLTRDLRNADRLLAELELSRDLTQHIVHLDCDAFFAAVELLDRPELKDVPFAVGG-GV 144
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T NY AR+FG R+ M F+A+KLCP+LI + ++ KY+ + R V YDP F +A
Sbjct: 145 LTTCNYVARQFGCRSGMASFVAKKLCPQLILIKQNYHKYSAKAQEVRTVLVNYDPRFESA 204
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
S+DEAYL+ITE C E G+ E++R V E+ +T SAG+A N LAK+CS+INKPN
Sbjct: 205 SIDEAYLNITEYCEEHGMDPATAVEQMRKEVQEKTSITVSAGIAANARLAKICSNINKPN 264
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 319
GQ+VLP +R A+MTF+ LP RK+ GIG+V E L ++ G+ TC ++ + L +F
Sbjct: 265 GQYVLPKERNAIMTFMRDLPTRKVNGIGRVLERELLEI-GVKTCGDLYDQRQYLNRLFGD 323
Query: 320 STADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 377
T +F L LGLG T P + RKS+ +E TF D L KL AE L DM+
Sbjct: 324 KTFEFLLRCYLGLGRTKIQPAEEYERKSVGTESTFHDISDPTKLRDKLRSTAEALEKDMK 383
Query: 378 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLI 433
K +GRTL +K+K +FEV TR V L K I ++D+ ++ + L+ E+P + LRL+
Sbjct: 384 KAECKGRTLCIKIKLHTFEVYTRQVILPKSIDLADDLYNYSLPMLAKLEQEIPGMKLRLM 443
Query: 434 GLRVTQF 440
GLR T
Sbjct: 444 GLRCTNL 450
>gi|396470133|ref|XP_003838570.1| similar to DNA-directed polymerase kappa [Leptosphaeria maculans
JN3]
gi|312215138|emb|CBX95091.1| similar to DNA-directed polymerase kappa [Leptosphaeria maculans
JN3]
Length = 646
Score = 338 bits (868), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 186/451 (41%), Positives = 272/451 (60%), Gaps = 18/451 (3%)
Query: 21 YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLT 79
YH + + KAG D VD++KV +++Y SKGSK+F NEE K+ + +KI + A+ +L
Sbjct: 45 YHLLGPSLTKAGQDTVDQQKVSEIIYNASKGSKFFNNEETKDKNLSEKINRILAKRRELE 104
Query: 80 SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
++ + AD I ELE TRDLS+ +H+D DAFYAAVE L P LK PMAVG +
Sbjct: 105 KMDLTSDLRRADDYIAELELTRDLSQVVVHLDCDAFYAAVEELDRPELKEVPMAVGK-GV 163
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T NY AR+FG R+ M GF+A KLCP+LI VP + KY ++ R+V +YDP F +A
Sbjct: 164 LTTCNYHARKFGCRSGMAGFVAMKLCPQLICVPMNVAKYMAKAEEVREVLARYDPGFESA 223
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
S DEAYL++T+ C+E +S ++ +LR V+E A +T SAG+A N LAK+ S+ NKPN
Sbjct: 224 SCDEAYLNLTQYCKEHHMSPEDVVSQLRADVFERAKITVSAGIAANAKLAKIGSNKNKPN 283
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 319
GQF LP+DR +M F+ ++P RK+ GIG+V E L D G+ TC ++ + L +F
Sbjct: 284 GQFYLPSDRQTIMDFMKTMPTRKVNGIGRVFEREL-DAIGVKTCGDIYAHRAYLAKLFGQ 342
Query: 320 STADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 377
F + LGLG T +A RKS+ +E TF + L KL +AE L D++
Sbjct: 343 KAFQFLMQCYLGLGRTKIQRADESHRKSVGTETTFRELQSPDDLRGKLRHVAEELEGDLK 402
Query: 378 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLI 433
+ +GRTL +K+K ++EV TR +T + ++D+ K++ +L+ +E+P + LRL+
Sbjct: 403 RTEYKGRTLCIKIKLHTYEVHTRQITPPFAVHKADDLYKYSLPMLEKFMSEIPNMKLRLM 462
Query: 434 GLRVTQFNEDK---------VRAPSDPTQKT 455
GLRVT K +R P+ P T
Sbjct: 463 GLRVTHIISTKKPGIDFFGRIRPPTAPKPST 493
>gi|451997376|gb|EMD89841.1| hypothetical protein COCHEDRAFT_1177859 [Cochliobolus
heterostrophus C5]
Length = 606
Score = 338 bits (867), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 184/427 (43%), Positives = 262/427 (61%), Gaps = 9/427 (2%)
Query: 21 YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLT 79
YH + + KAG D VD+ KV ++Y SKGSK+F NEE K+ + KI+ + A+ L
Sbjct: 39 YHLLGPSLTKAGQDSVDQSKVSDIIYNASKGSKFFTNEEAKDKNLTDKIDKILAKRRHLE 98
Query: 80 SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
++ + AD I ELE RDL++ +H+D DAF+AAVE L P L+ P AVG +
Sbjct: 99 KLDLTSDLRRADDYIAELELGRDLTQIVVHLDCDAFFAAVEELDRPELRDVPFAVGK-GV 157
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T NY AR+FG R+ M GF+A KLCP+LI VP +F KYT ++ R+V YDPNF +A
Sbjct: 158 LTTCNYHARKFGCRSGMAGFVAMKLCPQLICVPMNFQKYTAKAEEVRQVLALYDPNFESA 217
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
S DEAYL++TE C E ++ E ++R VYE+A +T SAG+A N LAK+CS+INKPN
Sbjct: 218 SCDEAYLNLTEYCNEHRMTAEEAVRQMRADVYEKAKITVSAGIAANAKLAKICSNINKPN 277
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 319
GQF+LP+DR +M F+ +LP RK+ GIG+V E L D G+ TC ++ + L +F
Sbjct: 278 GQFLLPSDRQTIMDFMRTLPTRKVNGIGRVFEREL-DAIGVKTCGDIYAHRAYLAKLFGQ 336
Query: 320 STADFFLSVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 377
F + LGLG T +A RKS+ +E TF + L KL +AE L D++
Sbjct: 337 KAFQFLMQCYLGLGRTVIKRAEDYERKSVGTETTFKELQSPDALREKLRFVAEELEGDLK 396
Query: 378 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLI 433
+ +GRTL +K+K ++EV TR T + +ED+ K++ +L+ E+P + LRL+
Sbjct: 397 RTEYKGRTLCIKIKLHTYEVHTRQTTPPFAVHKAEDLYKYSLPMLEKLMKEIPNMRLRLM 456
Query: 434 GLRVTQF 440
GLRVT
Sbjct: 457 GLRVTHI 463
>gi|367032254|ref|XP_003665410.1| hypothetical protein MYCTH_2309074 [Myceliophthora thermophila ATCC
42464]
gi|347012681|gb|AEO60165.1| hypothetical protein MYCTH_2309074 [Myceliophthora thermophila ATCC
42464]
Length = 619
Score = 337 bits (865), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 182/418 (43%), Positives = 260/418 (62%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y +SKGSK+F +EE ++ + KIE + A+ +L + +S +
Sbjct: 41 KAGQDSVDQSKVSEIIYNVSKGSKFFNHEEARDRSLTAKIEGILAKKRQLETLDLSRELR 100
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD + +LE +RDLS+ +H+D DAFYAAVE L P LK P AVG ++ T NY AR
Sbjct: 101 AADNLLAQLELSRDLSQYIVHIDCDAFYAAVEQLDQPGLKDVPFAVGG-GVLTTCNYVAR 159
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M F+A+KLCPELI +P +F KY + R++ YDP F +AS+DEAYL+I
Sbjct: 160 KFGCRSGMASFVAKKLCPELIVLPLNFDKYNAKAAEVREILATYDPRFESASIDEAYLNI 219
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
TE C + ++ +R ++E+ +T SAG+A N LAK+CS+INKPNGQ+VLP DR
Sbjct: 220 TEYCLRHDMDPADVVSHMRREIHEKTHITVSAGIAANARLAKICSNINKPNGQYVLPRDR 279
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F+ LP RK+ GIG+V E L V GI TC ++ + L +F T +F L
Sbjct: 280 TAIMDFMRDLPCRKVNGIGRVLERELGSV-GIKTCGDIYTQRQYLDRLFGQKTYEFLLRC 338
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG TN P + RKS+ +E TF D L KL AE L AD+++ +GRTL
Sbjct: 339 YLGLGRTNIQPADEYERKSVGTESTFREMSDPVQLREKLRRTAEELEADLKRAECKGRTL 398
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
LK+K +FEV TR V K + ++D+ K++ + L+ ++P + LRL+GLR T
Sbjct: 399 CLKVKLHTFEVLTRQVVPPKAVCLADDLYKYSLPMLAKLEQDIPGLKLRLMGLRCTHL 456
>gi|345560473|gb|EGX43598.1| hypothetical protein AOL_s00215g334 [Arthrobotrys oligospora ATCC
24927]
Length = 699
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 193/422 (45%), Positives = 258/422 (61%), Gaps = 8/422 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
K+G D VD+ +V +++YE SKGSKYF NE RK+ + ++I+ + + A+L S K
Sbjct: 86 KSGQDNVDQSRVAEIIYEASKGSKYFVNESRKDLELTKRIDRILKKKAELDKTDTSSDLK 145
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD I LE RDLS++ +HVD DAFYA+VE L P LK PMAVG ++ T NYEAR
Sbjct: 146 KADAHIAALELERDLSQTIIHVDCDAFYASVEELDRPELKTVPMAVGK-GVLTTCNYEAR 204
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FGVR+ M G IA KLCP+L+F+P +F KY + R+V +YD F AAS DEAYL+I
Sbjct: 205 KFGVRSGMAGHIAIKLCPQLVFLPLNFEKYNAKAKEVREVLSRYDERFEAASCDEAYLNI 264
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T + E E++R V+E + LT SAG+APN +AK+CS+ NKPNGQF + NDR
Sbjct: 265 TPYLERHKLDPEEAVEKMRQEVFERSKLTVSAGIAPNARIAKICSNKNKPNGQFRVGNDR 324
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
AVM+F+ SLP+RK+ G+G+V E L V GI TC ++ L+ +F +F +SV
Sbjct: 325 SAVMSFMKSLPVRKVNGVGRVFERELEAV-GIKTCGDIYPMRGLILKLFGQKAYEFLISV 383
Query: 329 GLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T A RKSI SE TF E A L KL + AE L D+ K L+GRTL
Sbjct: 384 FLGLGRTVIRPAEEYIRKSIGSESTFPDLEGTANLREKLRKTAEALEEDLTKTELQGRTL 443
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAE---LPVSLRLIGLRVTQFNE 442
LK+K ++E R L I + D+ +A LL K E P+ LRL+GLR+T +
Sbjct: 444 ALKVKMFTYEEAIRQKPLPYPIWKAGDVYDYALPLLTKLEEEYKPMKLRLMGLRMTNLSS 503
Query: 443 DK 444
K
Sbjct: 504 RK 505
>gi|212526212|ref|XP_002143263.1| DNA-directed polymerase kappa, putative [Talaromyces marneffei ATCC
18224]
gi|210072661|gb|EEA26748.1| DNA-directed polymerase kappa, putative [Talaromyces marneffei ATCC
18224]
Length = 647
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 181/418 (43%), Positives = 263/418 (62%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y SKGSK+F +EE ++ + +KIE + AR A+L +S +
Sbjct: 39 KAGQDAVDQRKVSEIIYNASKGSKFFNHEEARDKVLTEKIEQILARRARLEKLDLSADLR 98
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD+ I ELE TRDLS+ +HVD DAF+AAVE L P LK PMAVG ++ T NY AR
Sbjct: 99 RADEHIAELELTRDLSQIVVHVDCDAFFAAVEELDRPELKHLPMAVGK-GVLTTCNYVAR 157
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M GF+A+KLCP+LI +P ++ KYT ++ R +F +YDP F +AS+DEAYL+I
Sbjct: 158 KFGCRSGMAGFVAKKLCPDLICIPQNYEKYTAKAEEIRAIFVEYDPCFESASIDEAYLNI 217
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T C E + E +++R+ + +E +T SAG+A N LAK+ S+ NKPNGQF +P++R
Sbjct: 218 TAYCDENDMDPQEAVQQMRSRIADETKITVSAGIAANTKLAKIASNQNKPNGQFYIPSER 277
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F+ LP+RK+ GIG+V E LR + GI TC ++ + L +F F +
Sbjct: 278 EAIMAFVKDLPVRKVNGIGRVFERELRAI-GIETCGQIYPHRASLKRLFGEKAFHFLMQC 336
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T P + RKS+ +E TFS D + KL A+ L+ D+ + +GRTL
Sbjct: 337 HLGLGRTKIQPAVDYERKSVGTESTFSEISDPDAIRAKLRWAADELARDLSRTQFKGRTL 396
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
LK+K +FEV TR V K + ++D+ ++ + L+ E+P + LRL+GLR T
Sbjct: 397 VLKIKLHTFEVYTRQVAPPKAVWLADDLYTYSLPILAKLQKEIPNMRLRLLGLRCTHL 454
>gi|240276616|gb|EER40127.1| DNA polymerase kappa [Ajellomyces capsulatus H143]
gi|325095340|gb|EGC48650.1| DNA polymerase kappa [Ajellomyces capsulatus H88]
Length = 604
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 186/453 (41%), Positives = 271/453 (59%), Gaps = 11/453 (2%)
Query: 1 MERSDGECASSSENPRPWQS--YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENE 57
ME S+ A + +P ++ YH + + KAG VD++KV +++Y SKGSK+F +E
Sbjct: 1 MESSENNGADDDRSTKPDETLKYHLLGPSLTKAGQGTVDQQKVSEIIYNASKGSKFFTHE 60
Query: 58 ERKEAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYA 117
+ ++ + KIE + A+ KL + Y + AD+ + ELE RDLS++ +H+D DAF+A
Sbjct: 61 KFRDQLLTTKIERILAQRQKLEKNDLLLYTRRADEYLAELELGRDLSQTVVHIDCDAFFA 120
Query: 118 AVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTK 177
AVE L P L+ PMAVG ++ T NY AR+FG R+ M GFIARKLCP+LI +P ++ K
Sbjct: 121 AVEELDRPELRELPMAVGK-GVLTTCNYHARKFGCRSGMAGFIARKLCPDLILIPQNYQK 179
Query: 178 YTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLT 237
YT ++ R + +DP F +AS+DEAYL+IT C I LR+ V E+ +T
Sbjct: 180 YTAKAEEIRAILSSFDPQFQSASIDEAYLNITAYCATNEIEPEVAVRRLRSQVMEQTKVT 239
Query: 238 CSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDV 297
SAG+APN +AK+CS+ NKPNGQ +PNDR +M F+S +P+RKI G+G+V E L +
Sbjct: 240 VSAGIAPNARIAKICSNWNKPNGQHYVPNDRSIIMKFMSEIPVRKINGVGRVFEREL-EA 298
Query: 298 FGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT--PQARFRKSISSERTFSVT 355
G+ C ++ ++ +F F + LGLGST + RKS+++ERTF
Sbjct: 299 IGVKNCSDIFTHRGVILPLFGEKCYRFLMQCYLGLGSTKIRPVEESERKSVATERTFRDI 358
Query: 356 EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 415
D A L L A L DM + RGRTLTLK+K +FEV +R V L K + S+DI
Sbjct: 359 GDMADLQEMLQLTALELEKDMLRTQFRGRTLTLKVKLHTFEVLSRQVVLPKAVCLSDDIY 418
Query: 416 KHA---SVLLKAELP-VSLRLIGLRVTQFNEDK 444
+A + L+ E+P + +RL+GLR T + K
Sbjct: 419 HYALPMLIRLRKEMPNMKIRLMGLRCTNLSSMK 451
>gi|322711916|gb|EFZ03489.1| DNA-directed polymerase kappa, putative [Metarhizium anisopliae
ARSEF 23]
Length = 621
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 179/427 (41%), Positives = 265/427 (62%), Gaps = 9/427 (2%)
Query: 21 YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLT 79
YH + + KAG + VD+ KV +++Y S+GSK+F EE ++ + +KIE + AR +L
Sbjct: 29 YHLLGPSLTKAGQEKVDQSKVSEIIYNASRGSKFFNREEVRDQVLTKKIEQILARKRQLE 88
Query: 80 SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
++ + AD+ I E E +RDL++ +H+D DAFYAAVE L P LK P AVG +
Sbjct: 89 QADLTQELRNADRVIHEFELSRDLTQHIVHIDCDAFYAAVEQLERPELKDVPFAVGG-GV 147
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T NY AR+FG R+ M GF+A+KLCP LI + F KYT + R++ YDP F +A
Sbjct: 148 LTTCNYVARQFGCRSGMAGFVAKKLCPSLILIKPSFPKYTAKAQEIREILADYDPRFESA 207
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
S+DEAYL+ITE C ++ + E+ E++R +Y++ +T SAG+A N LAK+CS++NKPN
Sbjct: 208 SIDEAYLNITEYCHDKDATPAEVIEQMRREIYQKTDITVSAGIAANTKLAKICSNMNKPN 267
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 319
GQ+VLP+DR ++M F+ LP RK+ GIG+V E L ++ G+ TC ++ + L +F
Sbjct: 268 GQYVLPSDRTSIMAFMRDLPTRKVNGIGRVLERELLEL-GVRTCGDIYDQRKYLNMLFGD 326
Query: 320 STADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 377
T +F + LGLG T P + RKSI +E TF D L KL AE L DM+
Sbjct: 327 KTFEFLIGCYLGLGRTKIQPAEEYERKSIGTESTFRELSDSVKLREKLRWTAEELEKDME 386
Query: 378 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLI 433
+ +GRTL LK+K +FEV TR V + + I S++++ + + L+ E+P + LRL+
Sbjct: 387 RAHCKGRTLCLKIKLHTFEVFTRQVVMPRAICSADELYNFSLPILTKLEQEIPAMKLRLM 446
Query: 434 GLRVTQF 440
GLR T
Sbjct: 447 GLRCTHL 453
>gi|46109048|ref|XP_381582.1| hypothetical protein FG01406.1 [Gibberella zeae PH-1]
Length = 639
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 181/422 (42%), Positives = 261/422 (61%), Gaps = 8/422 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y SKGSK+F EE ++ + QKIE + AR +L ++ +
Sbjct: 56 KAGQDKVDQTKVSEIIYNASKGSKFFNREEERDKNLTQKIEQIIARKTQLEKRDLTRDLR 115
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD+ I ELE TRDL++ +HVD DAFYAAVE L P +K P AVG ++ T NY AR
Sbjct: 116 NADRLIAELELTRDLTQHIVHVDCDAFYAAVEQLDRPEIKDLPFAVGG-GVLTTCNYVAR 174
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M GF+A+KLCP LI + +F KYT + R+V YDP F +AS+DEAYL+I
Sbjct: 175 KFGCRSGMAGFVAKKLCPNLILLKPNFQKYTAKAHEVREVLVNYDPRFESASIDEAYLNI 234
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
TE C+E + E+ E++R V+++ +T SAG+A N LAK+CS++NKPNGQ+VL +DR
Sbjct: 235 TEYCQEHQMGPAEVVEQMRREVHQKTNITVSAGIAANARLAKICSNMNKPNGQYVLSSDR 294
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
++ F+ L R + GIG+V E L ++ GI TC ++ + L +F T++F +
Sbjct: 295 PTILAFMRDLSTRSVNGIGRVLERELLEI-GIKTCGDLYEHRQYLNPLFGEKTSEFLFTC 353
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T P + RKS+ +E TF D L KL AE L DM++ +GRTL
Sbjct: 354 YLGLGRTKIQPAEEYERKSVGTESTFRDMSDPTQLREKLRSTAEDLEQDMKRAECKGRTL 413
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNE 442
LK+K +FEV TR L + I ++D+ +A + L+ ++P + LRL+GLR T +
Sbjct: 414 CLKVKLHTFEVFTRQAVLPRAIWLADDLYNYALPILTKLEQDMPGMRLRLMGLRCTHLVK 473
Query: 443 DK 444
K
Sbjct: 474 TK 475
>gi|440633626|gb|ELR03545.1| hypothetical protein GMDG_01296 [Geomyces destructans 20631-21]
Length = 625
Score = 335 bits (859), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 182/418 (43%), Positives = 261/418 (62%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
K+G D VD++KV ++Y+ SKGSK+F +EE ++ + KIE + A+L ++ QK
Sbjct: 32 KSGQDSVDQKKVSDIIYDASKGSKFFAHEENRDKLLTVKIEKILENKARLEKLNLTRDQK 91
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD+ + ELE +RDLS++ +HVD DAFYAAVE L P LK P AVG ++ T NY AR
Sbjct: 92 KADEYVTELELSRDLSQTIVHVDCDAFYAAVEELDRPELKQVPFAVGK-GVLTTCNYHAR 150
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M GF+ARKLCPELI +P +F KYT + R++ +YDP F +AS+DEAYL+I
Sbjct: 151 KFGCRSGMAGFVARKLCPELIQLPLNFEKYTAKAREVREIIARYDPRFESASIDEAYLNI 210
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T C I E E+LR V+E+ +T SAG+A N LAK+CS++NKPNGQ+ L N+R
Sbjct: 211 TTYCESNNIGPDEAVEQLRQEVHEKTKITISAGIAANTKLAKICSNMNKPNGQYRLQNNR 270
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A++ F+++LP RK+ G+G+V E L D G+ TC ++ Q L +F F +
Sbjct: 271 GAIIAFMNTLPTRKVNGVGRVFEREL-DAVGVKTCGDIYQYRQYLSRLFGEKAFSFLIHC 329
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T+T P + RKS+ +E TF L KL + A+ L DM K ++GRTL
Sbjct: 330 YLGLGRTDTQPAEEYERKSVGTESTFGDLSSHKGLRDKLEKTAQDLEKDMVKAQVKGRTL 389
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP---VSLRLIGLRVTQF 440
LK+K ++EV TR + K + + D+ K++ +L K E ++LRL+GLR T
Sbjct: 390 VLKVKLHTYEVLTRQIIPPKAVYLAPDLYKYSLPMLSKLEQEFKGLALRLMGLRCTHL 447
>gi|400601997|gb|EJP69622.1| impB/mucB/samB family protein [Beauveria bassiana ARSEF 2860]
Length = 638
Score = 335 bits (858), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 182/427 (42%), Positives = 262/427 (61%), Gaps = 9/427 (2%)
Query: 21 YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLT 79
YH + + KAG D VD++KV +++Y SKGSK+F EE ++ + QKI+ + R +L
Sbjct: 46 YHLLGPSLTKAGQDSVDQKKVSEIIYNASKGSKFFNREEERDKILTQKIDRILRRKKELD 105
Query: 80 SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
++H + AD+ I ELEA+RDL++ +H+D DAFYAAVE L P LK P AVG +
Sbjct: 106 KLDLTHERLSADRLITELEASRDLTQHIVHIDCDAFYAAVEQLDRPELKDLPFAVGG-GV 164
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T NY AR+FG R+ M GF+A+KLCP+LI + +FTKYT R+V YD F +A
Sbjct: 165 LTTCNYLARQFGCRSGMAGFVAKKLCPQLILIKPNFTKYTAKGREVREVLADYDARFESA 224
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
S+DEAYL+ITE C G+ E+ E+LR V+E+ +T SAG+A N LAK+CS+ NKPN
Sbjct: 225 SIDEAYLNITEYCVAHGMGPAEVVEQLRKEVHEKTNITVSAGIAANSRLAKICSNFNKPN 284
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 319
GQ+VL ++R ++ F+ LP RKI GIG+V E L ++ GI C ++ + L +F
Sbjct: 285 GQYVLSHERNEIVAFMRDLPTRKIPGIGRVLERELLEI-GIKNCGDIYEHRQYLHRLFGD 343
Query: 320 STADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 377
T +F + LGLG T P + RKS+ +E TF L KL AE L D++
Sbjct: 344 KTFEFLIGCYLGLGRTKIQPAEEYERKSVGTESTFREMSHPTALREKLRATAEDLEGDLK 403
Query: 378 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLI 433
+ +GRTL LK+K +FEV TR V + + ++D+ +A + L+ E+P + LRL+
Sbjct: 404 RAECKGRTLCLKIKLHTFEVYTRQVVPPRAVHLADDLYNYALPMLAKLEQEMPGMKLRLM 463
Query: 434 GLRVTQF 440
GLR T
Sbjct: 464 GLRCTHL 470
>gi|225556402|gb|EEH04691.1| DNA polymerase kappa [Ajellomyces capsulatus G186AR]
Length = 604
Score = 335 bits (858), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 208/559 (37%), Positives = 304/559 (54%), Gaps = 48/559 (8%)
Query: 1 MERSDGECASSSENPRPWQS--YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENE 57
ME S+ A + +P ++ YH + + KAG VD++KV +++Y SKGSK+F +E
Sbjct: 1 MESSENNGADDDRSTKPDETLKYHLLGPSLTKAGQGTVDQQKVSEIIYNASKGSKFFTHE 60
Query: 58 ERKEAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYA 117
+ ++ + KIE + A+ KL + Y + AD+ + ELE RDLS++ +H+D DAF+A
Sbjct: 61 KFRDQLLTTKIERILAQKQKLEKNDLLLYTRRADEYLAELELGRDLSQTVVHIDCDAFFA 120
Query: 118 AVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTK 177
AVE L P L+ PMAVG ++ T NY AR+FG R+ M GFIARKLCP+LI +P ++ K
Sbjct: 121 AVEELDRPELRELPMAVGK-GVLTTCNYHARKFGCRSGMAGFIARKLCPDLILIPQNYQK 179
Query: 178 YTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLT 237
Y ++ R + +DP F +AS+DEAYL+IT C I + LR+ V E+ +T
Sbjct: 180 YAAKAEEIRAILSSFDPQFQSASIDEAYLNITAYCATNEIEPEVVVCRLRSQVMEQTRVT 239
Query: 238 CSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDV 297
SAG+APN +AK+CS+ NKPNGQ +PNDR +M F+S +P+RKI G+G+V E L +
Sbjct: 240 VSAGIAPNARIAKICSNWNKPNGQHYVPNDRSIIMKFMSEIPVRKINGVGRVFEREL-EA 298
Query: 298 FGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT--PQARFRKSISSERTFSVT 355
G+ C ++ ++ +F F + LGLGST + RKS+ +ERTF
Sbjct: 299 IGVKNCSDIFTHRGVILPLFGEKCYRFLMQCYLGLGSTKIRPVEESERKSVGTERTFRDI 358
Query: 356 EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 415
D A L L A L DM + RGRTLTLK+K +FEV +R V L K + S+DI
Sbjct: 359 GDMADLQEMLQLTALELEKDMLRTQFRGRTLTLKVKLHTFEVLSRQVVLPKAVCLSDDIY 418
Query: 416 KHAS---VLLKAELP-VSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASK---- 467
+A + L+ E+P + +RL+GLR T N +R P NF + S
Sbjct: 419 DYAFPMLIRLRKEMPNMKIRLMGLRCT--NLSSMRKPD-------INFFGGTYTSSVRPQ 469
Query: 468 --KIVGDQNSLGS------DIND--DCLIDDKETSVSLDVSETNNYEFGDPVCDNSLPDL 517
VG+ + G +I D D L D T D S P+
Sbjct: 470 SHSFVGNASCFGEEEFGVLNIEDTHDRLRDSDATRRDWDTSHR--------------PNG 515
Query: 518 NDENCSFSNKISEVEKIHE 536
D + N+I+E+++I E
Sbjct: 516 TDTDSPIPNQINELDRIPE 534
>gi|121709435|ref|XP_001272419.1| DNA-directed polymerase kappa, putative [Aspergillus clavatus NRRL
1]
gi|119400568|gb|EAW10993.1| DNA-directed polymerase kappa, putative [Aspergillus clavatus NRRL
1]
Length = 600
Score = 335 bits (858), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 189/450 (42%), Positives = 268/450 (59%), Gaps = 17/450 (3%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y SKGSK+F +E+ ++ + KIE + A+L +SH +
Sbjct: 37 KAGQDAVDQRKVSEIIYNASKGSKFFNHEQNRDRVLTVKIERILKEKARLEKMDLSHDLR 96
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD+ I ELE+TRDLS+ +HVD DAF+AAVE L P LK PMAVG ++ T NYEAR
Sbjct: 97 KADELISELESTRDLSQYVVHVDCDAFFAAVEELDRPELKTVPMAVGK-GVLSTCNYEAR 155
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
++G R+ M F+A KLCP LI +P ++ KYT + R +F +YDP F +AS+DEAYL+I
Sbjct: 156 KYGCRSGMATFVAMKLCPHLICLPQNYEKYTAKAQEIRAIFAQYDPLFESASIDEAYLNI 215
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T C E + E +R V E+ + SAG+A N +AK+ S+ NKPNGQF +PNDR
Sbjct: 216 TSYCNENNLDPEEAVSRMRAEVLEKTKIFVSAGIAANAKIAKISSNRNKPNGQFRVPNDR 275
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
AVM F+ LP+RK+ G+G+V E L D GI +C ++ + + L +F F +
Sbjct: 276 DAVMEFMKELPVRKVNGVGRVFEREL-DAIGIKSCGDIWPQRAYLTRLFGEKAFQFLIQC 334
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T P ++ RKS+ +ERTF+ DK LL KL + A+ L D+ + +GRTL
Sbjct: 335 YLGLGRTQIQPVEKYERKSVGTERTFNELGDKQLLRGKLWDTAQELEKDLARNECKGRTL 394
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNE 442
LK+K ASFEV +R + +S ++D+ A + L+ E+P + LRL+GLR T
Sbjct: 395 VLKVKLASFEVLSRQCQPPRALSLAKDLHSFALPMLAKLEREIPNMKLRLLGLRCTNLVS 454
Query: 443 DKVRAPSDPTQKTLTNFMTSGHASKKIVGD 472
T+K NF K + GD
Sbjct: 455 ---------TKKVEVNFFGPPLRPKSLSGD 475
>gi|392593740|gb|EIW83065.1| IMS-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 642
Score = 334 bits (856), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 181/418 (43%), Positives = 263/418 (62%), Gaps = 7/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEH-MRARCAKLTSPVISHYQ 87
KAG+D D+ ++ +++ E SKGSK++ENE+RK+ + ++IE ++ R L +
Sbjct: 27 KAGLDN-DQSEINRIIAEASKGSKFYENEKRKDKELSERIERILKQRDEVLQGANTRAIE 85
Query: 88 KVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEA 147
K D I LE+ RDLS+ +HVDMDAF+A VE L +PSL GKP VG ++ TA+YEA
Sbjct: 86 KELDHTIEVLESQRDLSQYIVHVDMDAFFANVELLDDPSLAGKPFGVGG-GVMSTASYEA 144
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FGVR+ MP FIA+KLCP+LI V + + +Y S+ +F +YDP AA DE YL+
Sbjct: 145 RKFGVRSGMPTFIAKKLCPDLIVVYSHYARYNEMSNKVMSIFRRYDPTMYAAGCDEGYLN 204
Query: 208 ITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 267
IT+ CRE +S +E+R +V +E LT SAG+APN++LAK+CSD KPNGQF L +
Sbjct: 205 ITKYCREHNLSPDACVQEIRETVQKETQLTVSAGIAPNKMLAKICSDKKKPNGQFHLEFE 264
Query: 268 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLS 327
+ F+ L IRK+ G+G+V E +L + GI+TC +++Q + L + +F L+
Sbjct: 265 PGVIKDFMKDLSIRKVPGVGRVNERLL-EAIGIHTCGDIIQHRAALYLMDKQFGLNFLLN 323
Query: 328 VGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 385
LG+ S P R RKSI +ERTFS D+ ++ KL ++ L DM G G+T
Sbjct: 324 THLGIASNVVQPITRDLRKSIGAERTFSPISDRYRIFAKLEDVCAELEKDMDSGGWTGKT 383
Query: 386 LTLKLKTASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRVTQFNE 442
+TLK K +F+V TRA + +++SS ED+ LL ELPV++RLIGLRVT+ +
Sbjct: 384 VTLKFKLDTFQVFTRAKSFDRWVSSKKEDLFAIGKELLIPELPVTIRLIGLRVTKLKD 441
>gi|146182193|ref|XP_001470638.1| DNA polymerase IV / kappa [Tetrahymena thermophila]
gi|146143895|gb|EDK31392.1| DNA polymerase IV / kappa [Tetrahymena thermophila SB210]
Length = 950
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 173/436 (39%), Positives = 258/436 (59%), Gaps = 9/436 (2%)
Query: 13 ENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMR 72
EN + ++ KAG+D VDKEK+ K++ E ++ S++++ ++ K ++I+ M+
Sbjct: 10 ENQQQKGEVQYLFVGNKAGLDNVDKEKINKIINETTQSSEFYKRQQVKRDQYDERIKEMK 69
Query: 73 ARCAKLTSPVIS--HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGK 130
+ I +K + ++ +++ L R W+H DMD FY A E P LK
Sbjct: 70 LIIEQTKQDHIKLLKVKKECEDKLDQIKQLVQLDRIWVHFDMDMFYVACELKDRPQLKDL 129
Query: 131 PMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFC 190
P+AVG MSMI TANY AR+FGVR+AMPGFIA+KLCP+LI +P +F KY SD +KV
Sbjct: 130 PVAVGGMSMISTANYVARKFGVRSAMPGFIAKKLCPQLILIPCNFEKYRKASDQFKKVLY 189
Query: 191 KYDPNFMAASLDEAYLDITEVCRERGISG----IEIAEELRTSVYEE-AGLTCSAGVAPN 245
+YDPN + LDEA LDIT+ ++ I+ ++ +R V+E GLTCS G+ PN
Sbjct: 190 QYDPNLESMGLDEANLDITDYLQQNNINSDAQIYDLCHSIRNQVFESTGGLTCSCGIGPN 249
Query: 246 RLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEE 305
++LAK+CSD+NKPNGQF L ND + F+ LPIRKI GIG VTE IL+ + GI C +
Sbjct: 250 KMLAKICSDMNKPNGQFQLINDEEKIKDFMKDLPIRKIPGIGNVTEQILKGI-GIEKCSQ 308
Query: 306 MLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKL 365
+L++ + F + D +S LG+G + + +KS+S RTF + K+
Sbjct: 309 ILERVIDIKICFKDLSFDHLVSSALGIGRSWHEEETEKKSLSVSRTFQAISTIEEINEKI 368
Query: 366 AEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE 425
+I+++L+ D + E G+ L + K F++R++ L KYI SE I K A L+K
Sbjct: 369 HQISQLLAEDAKAEQKIGKHLAVSFKNVKFQMRSKNRMLDKYIQDSEQIEKVAKELVKEL 428
Query: 426 LPVS-LRLIGLRVTQF 440
LP LRLIG+R++Q
Sbjct: 429 LPTEPLRLIGIRLSQL 444
>gi|171680875|ref|XP_001905382.1| hypothetical protein [Podospora anserina S mat+]
gi|27764332|emb|CAD60612.1| unnamed protein product [Podospora anserina]
gi|170940065|emb|CAP65292.1| unnamed protein product [Podospora anserina S mat+]
Length = 641
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 175/418 (41%), Positives = 262/418 (62%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +V+Y SKGSK+F EE ++ + KI+ + A+ +L +S +
Sbjct: 54 KAGQDKVDQSKVAEVIYNSSKGSKFFNREEERDKALTVKIDQILAKKRQLEKLDLSRELR 113
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD + +LEA+RDL++ +H+D DAFYAAVE L P L P AVG ++ T NY AR
Sbjct: 114 AADALLAQLEASRDLTQHIVHIDCDAFYAAVEQLDRPELADLPFAVGG-GVLTTCNYVAR 172
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFG R+ M GF+A+KLCPELI +P +F KY + R++ YDP F +AS+DEAYL+I
Sbjct: 173 RFGCRSGMAGFVAKKLCPELILLPLNFDKYNAKAAEVREILADYDPRFESASIDEAYLNI 232
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ C + G+ ++ ++R ++E+ +T SAG+A N LAK+CS++NKPNGQ+VLP DR
Sbjct: 233 TQYCIDHGMDAADVVSQMRREIHEKTHITVSAGIAANARLAKICSNMNKPNGQYVLPRDR 292
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
+ +M F+ +L R++ GIG+V E L GI+TC ++ + + +F T +F L
Sbjct: 293 VVIMEFMRNLSCRQVNGIGRVLEREL-GTIGISTCGDIYTQRQFIEKLFGEKTYNFLLRC 351
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T+ P + RKS+ +ERTF ++ L +L IAE L DM++ +GRTL
Sbjct: 352 YLGLGRTSIQPAEEYERKSVGTERTFRDMDNPTQLREQLRRIAEELEKDMRRAECKGRTL 411
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQF 440
+K+K ++EV TR + K + ++D+ +A V L+ E+P + LRL+GLR T
Sbjct: 412 CIKVKLHTYEVLTRQIAPPKAVYLADDLYDYALPMLVKLEQEVPNIKLRLLGLRCTHL 469
>gi|408391946|gb|EKJ71312.1| hypothetical protein FPSE_08551 [Fusarium pseudograminearum CS3096]
Length = 639
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/418 (42%), Positives = 258/418 (61%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y SKGSK+F EE ++ + QKIE + AR +L ++ +
Sbjct: 56 KAGQDKVDQTKVSEIIYNASKGSKFFNREEERDKTLTQKIEQIIARKTQLEKRDLTRDLR 115
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD+ I ELE TRDL++ +HVD DAFYAAVE L P +K P AVG ++ T NY AR
Sbjct: 116 NADRLIAELELTRDLTQHIVHVDCDAFYAAVEQLDRPEIKDLPFAVGG-GVLTTCNYVAR 174
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M GF+A+KLCP LI + +F KYT + R+V YDP F +AS+DEAYL+I
Sbjct: 175 KFGCRSGMAGFVAKKLCPNLILLKPNFQKYTAKAHEVREVLVNYDPRFESASIDEAYLNI 234
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
TE C+E + E+ E++R V+++ +T SAG+A N LAK+CS++NKPNGQ+VL +DR
Sbjct: 235 TEYCQEHQMGPAEVVEQMRREVHQKTNITVSAGIAANARLAKICSNMNKPNGQYVLSSDR 294
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
++ F+ L R + GIG+V E L ++ I TC ++ + L +F T++F +
Sbjct: 295 PTILAFMRDLSTRSVNGIGRVLERELLEI-DIKTCGDLYEHRQYLNPLFGEKTSEFLFTC 353
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T P + RKS+ +E TF D L KL AE L DM++ +GRTL
Sbjct: 354 YLGLGRTKIQPAEEYERKSVGTESTFRDMSDPTQLREKLRSTAEDLEQDMKRAECKGRTL 413
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
LK+K +FEV TR L + I ++D+ +A + L+ ++P + LRL+GLR T
Sbjct: 414 CLKVKLHTFEVFTRQAVLPRAIWLADDLYNYALPILTKLEQDMPGMRLRLMGLRCTHL 471
>gi|196001133|ref|XP_002110434.1| hypothetical protein TRIADDRAFT_22932 [Trichoplax adhaerens]
gi|190586385|gb|EDV26438.1| hypothetical protein TRIADDRAFT_22932 [Trichoplax adhaerens]
Length = 653
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 189/501 (37%), Positives = 286/501 (57%), Gaps = 78/501 (15%)
Query: 27 NAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHY 86
++KAGM G+DK+K+ +++ E +KGS+++ NE RKE +++ ++A+ K+T
Sbjct: 8 DSKAGMTGLDKQKINRIILEATKGSRFYNNEMRKEKQATERVTRLKAKLTKITQA----- 62
Query: 87 QKVAD----KRIL-ELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMIC 141
Q++A KR+ +LE TRDLSR +HVDMDAFYAA+E NPSL KPMAVG M+
Sbjct: 63 QRLAALDELKRMENQLETTRDLSRFIVHVDMDAFYAAIEIRDNPSLADKPMAVGGTGMML 122
Query: 142 TANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASL 201
T+NY ARR+GVRAAMPGFI ++LCP+L+FV + KY S R + +YDPNF + SL
Sbjct: 123 TSNYIARRYGVRAAMPGFIGKRLCPDLVFVKPNSAKYAQASKEVRAILAEYDPNFASVSL 182
Query: 202 DEAYLDITEVCRERG--------------------------------ISGI--------- 220
DEAY+D+TE R + G+
Sbjct: 183 DEAYMDLTEYLEGRKCTFPSSHVEFTVPQQDLTEDMLKILNEVAPPTVDGVDSYNNCSSN 242
Query: 221 -------------EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 267
++ E+R + + LT SAG+ PN++LAK+CSD KPNGQF +
Sbjct: 243 SSIRKVSFGHTIEDVMREIRFKINRKTKLTASAGIGPNKMLAKICSDWKKPNGQFKVEFT 302
Query: 268 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLS 327
R ++ F+ LP RKI GIGKV+E +L ++ I+ C+E+ K L+ +FS+ + FFL+
Sbjct: 303 RDKIIEFMRQLPTRKISGIGKVSERLLNEI-EISNCKELYDKRDLIYLLFSNVSTKFFLA 361
Query: 328 VGLGLGSTNTPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
V +G+GS + RKSIS ERTF A + K ++ + L+ M+KE + GR L
Sbjct: 362 VAMGIGSNEVSSKNYQRKSISCERTFGEISRLADMLVKCQKLCDNLANHMKKENITGRCL 421
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF 440
T+KLKT +FEV+ R+V+L+ + +S+ ++ AS ++++E + LRL+G++++
Sbjct: 422 TVKLKTVAFEVKQRSVSLKHHTNSTTEMFNIASEVIRSERLACQPERLRLRLMGIKMSTL 481
Query: 441 NEDKVRAPSD--PTQKTLTNF 459
R SD Q TLT +
Sbjct: 482 K----RHESDEKSIQDTLTRY 498
>gi|85092716|ref|XP_959512.1| hypothetical protein NCU02457 [Neurospora crassa OR74A]
gi|28920947|gb|EAA30276.1| hypothetical protein NCU02457 [Neurospora crassa OR74A]
Length = 626
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 178/422 (42%), Positives = 258/422 (61%), Gaps = 8/422 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y S+GSKYF EE ++ + KI+ + ++ +L + H +
Sbjct: 53 KAGQDTVDQLKVSEIIYNASRGSKYFNREEARDRSLTAKIDQILSKKRELEKLDLGHELR 112
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
VAD I +LE +RDLS+ +HVD DAFYAAVE L P LK P AVG ++ T NY AR
Sbjct: 113 VADSLIAQLELSRDLSQHIVHVDCDAFYAAVEQLDRPELKDLPFAVGG-GVLTTCNYVAR 171
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
++G R+ M GF+A+KLCPELI +P F KYT + R++ +YDPNF +AS+DEAYL+I
Sbjct: 172 KYGCRSGMAGFVAKKLCPELILLPISFEKYTAKAGEVREIIAEYDPNFESASIDEAYLNI 231
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ C ++ + ++R ++E +T SAG+A N LAK+CS++NKPNGQ+VLP++R
Sbjct: 232 TDYCTRHAMAPADAVAKMRNDIHERTSITVSAGIAANTRLAKICSNMNKPNGQYVLPSER 291
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
+A++ F+ LP RK+ GIG+V E L GI+T ++ L +F ++F L
Sbjct: 292 VAILEFMRDLPCRKVNGIGRVFEREL-AALGIHTLGDIYSNRQYLRNLFGEKASEFLLHC 350
Query: 329 GLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T A RKS+ +E TF D L KL +E L D+++ +GRTL
Sbjct: 351 FLGLGRTCVKPAETYERKSVGTESTFRDMSDPTELRNKLRRTSEDLEQDLRRAECKGRTL 410
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNE 442
LK+K +FEV TR L + + + D+ KHA + L+ E+P + LRL+GLR T
Sbjct: 411 CLKVKLHTFEVLTRQTVLPRAVHLATDLYKHALPMLTKLEQEIPGMKLRLMGLRCTNLAT 470
Query: 443 DK 444
K
Sbjct: 471 TK 472
>gi|242780241|ref|XP_002479554.1| DNA-directed polymerase kappa, putative [Talaromyces stipitatus
ATCC 10500]
gi|218719701|gb|EED19120.1| DNA-directed polymerase kappa, putative [Talaromyces stipitatus
ATCC 10500]
Length = 654
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 177/418 (42%), Positives = 262/418 (62%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y SKGSK+F +EE ++ + +KIE + A A+L +S +
Sbjct: 41 KAGQDAVDQRKVSEIIYNASKGSKFFNHEEARDKILTEKIEQILAHKARLEKLNLSADLR 100
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ I ELE +RDLS++ +HVD DAF+AAVE L P LK P AVG ++ T NY AR
Sbjct: 101 RTDEYIAELELSRDLSQTVVHVDCDAFFAAVEELDRPELKHLPFAVGK-GVLTTCNYVAR 159
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M GF+A+KLCP+LI +P ++ KY+ ++ R +F +YDP F +AS+DEAYL+I
Sbjct: 160 KFGCRSGMAGFVAKKLCPDLICIPQNYEKYSAKAEEIRAIFAQYDPCFESASIDEAYLNI 219
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T C E + E +++R + EE +T SAG+A N LAK+ S+ NKPNGQ+ +P++R
Sbjct: 220 TAYCDENNMDPQEAVQQMRARIAEETKITVSAGIATNTKLAKIASNQNKPNGQYFIPSER 279
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M+F+ LP+RK+ GIG+V E LR V GI TC ++ + +LL +F F +
Sbjct: 280 EAIMSFVKDLPVRKVNGIGRVFERELRAV-GIETCGQIYPQRALLKRLFGGKAFQFLMQC 338
Query: 329 GLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T A RKS+ +E TF+ D + KL A+ L+ D+ + +GRTL
Sbjct: 339 YLGLGRTKIQPAEDYERKSVGTESTFAEISDPDAIRVKLRWAADELAKDLARTQFKGRTL 398
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
LK+K +FEV TR V K + ++D+ ++ + L+ E+P + LRL+GLR T
Sbjct: 399 VLKVKLHTFEVYTRQVAPPKAVWLADDLYTYSLPILAKLQKEIPNMRLRLLGLRCTHL 456
>gi|393217454|gb|EJD02943.1| DNA/RNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 718
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 173/420 (41%), Positives = 255/420 (60%), Gaps = 6/420 (1%)
Query: 34 GVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPV-ISHYQKVADK 92
G+D+ ++ + + E SKGSK++ENE+R++A ++I + R +L I+ + D+
Sbjct: 34 GIDQAEINRRIAEASKGSKFYENEKRRDADWTERINKLLERRDELLRESDIARVEAKVDR 93
Query: 93 RILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGV 152
E E+ RDLS++ +HVDMDAF+A VE NP LK KP AV + ++ T +Y+AR+FGV
Sbjct: 94 VFAEKESRRDLSQTIVHVDMDAFFANVELQHNPDLKDKPFAVVGLGVVTTGSYDARKFGV 153
Query: 153 RAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVC 212
RA P +IA++LCP+LI VP D+ + S+ V +YDPN A DEAYL+IT+
Sbjct: 154 RAGQPEYIAKRLCPDLILVPVDYKRVAVVSEKVMDVCKRYDPNMYIAGCDEAYLNITKHL 213
Query: 213 RERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVM 272
+ +S E EELR+ + EE LT SAG+APN +LAK+CSD NKPNGQF +P R AVM
Sbjct: 214 EDHKLSAAECVEELRSKICEETNLTASAGIAPNMMLAKICSDRNKPNGQFQMPFTREAVM 273
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F+ LP+RK+ GIG+V E +L + G+ TC ++ +++ + DF LGL
Sbjct: 274 EFMRDLPVRKVPGIGRVGERVL-EAIGVKTCGDIRAARAIIWLMPRKFAVDFLFETHLGL 332
Query: 333 GST--NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 390
T Q RKS+ RTF + K +++KL IA +L D++ EG G+ + L
Sbjct: 333 APTVVKPYQREERKSVGVSRTFRAVQTKEAIFQKLEYIASLLERDLETEGWVGKIVILTY 392
Query: 391 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSD 450
K +F V TR T +++IS ED+ L+K LP+ +RL+GLRVT + +RAP+D
Sbjct: 393 KLDTFRVHTRRATFERWISKKEDLFNIGKDLIKPYLPLRVRLLGLRVTDLID--LRAPTD 450
>gi|440470492|gb|ELQ39560.1| DNA polymerase kappa [Magnaporthe oryzae Y34]
gi|440487264|gb|ELQ67065.1| DNA polymerase kappa [Magnaporthe oryzae P131]
Length = 873
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 178/418 (42%), Positives = 259/418 (61%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y SK SK+F EE+K+ + +KI ++A+ A+L + +S +
Sbjct: 281 KAGQDSVDQTKVSEIIYNASKNSKFFLREEQKDKVLTEKIARIQAKKARLDNLDLSRDLR 340
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+AD I E E +RDL++ +HVD DAFYAAVE L P L P AVG ++ T NY AR
Sbjct: 341 LADAYIAERELSRDLTQVIVHVDCDAFYAAVEQLDRPELVDLPFAVGG-GVLTTCNYVAR 399
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
FG R+ M GF+A+KLCP L+F+ +F KYT + RKV KYDP F +AS+DEAYL+I
Sbjct: 400 TFGCRSGMAGFVAKKLCPNLVFIKPNFEKYTAKAQEVRKVLAKYDPRFESASIDEAYLNI 459
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ C + + E E++R V+ +T S+GVA N LAK+C +INKPNGQ+VLP++R
Sbjct: 460 TQYCADNNLEPGEAVEQMRREVHLSTNITVSSGVAANAKLAKICGNINKPNGQYVLPSER 519
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A++ F+ +P RK+ GIG+V E L+ V G++TC ++ + L +F F +
Sbjct: 520 PAIIEFMRDMPCRKVNGIGRVLERELQAV-GVSTCGDIYPQRKYLTQLFGEKAFKFLVDC 578
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG TN P + RKS+ +E TF+ + L +KL AE L DM++ ++GRTL
Sbjct: 579 YLGLGRTNIQPAEEYERKSVGTESTFNSISEPGDLRKKLRHTAEELEKDMKRAEVKGRTL 638
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVTQF 440
+K+K +FEV TR V L + I +ED+ ++ +L K + S RL+GLR T
Sbjct: 639 VIKIKLHTFEVYTRQVILPRSIHLAEDLYNYSLPMLARLEKEKPGFSCRLMGLRCTNL 696
>gi|389635609|ref|XP_003715457.1| DNA polymerase kappa [Magnaporthe oryzae 70-15]
gi|351647790|gb|EHA55650.1| DNA polymerase kappa [Magnaporthe oryzae 70-15]
Length = 634
Score = 331 bits (849), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 178/418 (42%), Positives = 259/418 (61%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y SK SK+F EE+K+ + +KI ++A+ A+L + +S +
Sbjct: 42 KAGQDSVDQTKVSEIIYNASKNSKFFLREEQKDKVLTEKIARIQAKKARLDNLDLSRDLR 101
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+AD I E E +RDL++ +HVD DAFYAAVE L P L P AVG ++ T NY AR
Sbjct: 102 LADAYIAERELSRDLTQVIVHVDCDAFYAAVEQLDRPELVDLPFAVGG-GVLTTCNYVAR 160
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
FG R+ M GF+A+KLCP L+F+ +F KYT + RKV KYDP F +AS+DEAYL+I
Sbjct: 161 TFGCRSGMAGFVAKKLCPNLVFIKPNFEKYTAKAQEVRKVLAKYDPRFESASIDEAYLNI 220
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ C + + E E++R V+ +T S+GVA N LAK+C +INKPNGQ+VLP++R
Sbjct: 221 TQYCADNNLEPGEAVEQMRREVHLSTNITVSSGVAANAKLAKICGNINKPNGQYVLPSER 280
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A++ F+ +P RK+ GIG+V E L+ V G++TC ++ + L +F F +
Sbjct: 281 PAIIEFMRDMPCRKVNGIGRVLERELQAV-GVSTCGDIYPQRKYLTQLFGEKAFKFLVDC 339
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG TN P + RKS+ +E TF+ + L +KL AE L DM++ ++GRTL
Sbjct: 340 YLGLGRTNIQPAEEYERKSVGTESTFNSISEPGDLRKKLRHTAEELEKDMKRAEVKGRTL 399
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVTQF 440
+K+K +FEV TR V L + I +ED+ ++ +L K + S RL+GLR T
Sbjct: 400 VIKIKLHTFEVYTRQVILPRSIHLAEDLYNYSLPMLARLEKEKPGFSCRLMGLRCTNL 457
>gi|449546327|gb|EMD37296.1| hypothetical protein CERSUDRAFT_113946 [Ceriporiopsis subvermispora
B]
Length = 671
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 181/428 (42%), Positives = 261/428 (60%), Gaps = 7/428 (1%)
Query: 26 TNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEH-MRARCAKLTSPVIS 84
+ KAG+ D+ + +++ E SKGSK++ENE+RK+ ++I ++ R L +
Sbjct: 26 STTKAGL-ATDQRDINRIIAEASKGSKFYENEKRKDKETTERISRILKHRDEVLKGVDLH 84
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTAN 144
++ D+ ++++EA RDLS++ +HVDMDAFYA+VE L NP L+G+P AVG ++ TA+
Sbjct: 85 KVEQNVDQLLVKMEAQRDLSQTIVHVDMDAFYASVELLDNPDLQGQPFAVG-HGVLTTAS 143
Query: 145 YEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA 204
YEAR++GVR+ M FIA KLCP LI V +F++Y+ S +F +YDP+ AA DE
Sbjct: 144 YEARKYGVRSGMASFIATKLCPNLILVKNNFSRYSEMSKKVMNIFRRYDPDMCAAGCDEG 203
Query: 205 YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 264
YL+IT C E I E E+R V+ E LT SAG+APN++LAK+CSD NKPNGQF L
Sbjct: 204 YLNITPYCTEHNIVPEECVREMREVVHRETDLTVSAGIAPNKMLAKICSDKNKPNGQFKL 263
Query: 265 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 324
A+ F+ L IRK+ G+G+V E +L + GI TC ++ +L + F
Sbjct: 264 EFQPQAIKAFMKDLSIRKVPGVGRVNERLLESI-GIKTCGDIYTHRGVLSLMDKQFGLHF 322
Query: 325 FLSVGLGLGS--TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 382
L LG+ S Q RKSI +ERTFS + + KL E+A L ADMQ +G
Sbjct: 323 LLQTYLGIASNVVQPWQREERKSIGAERTFSTLWTQEDILNKLEEVAAELEADMQGDGWS 382
Query: 383 GRTLTLKLKTASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRVTQFN 441
G+T+TLK K +++V TRA + ++IS+ ED+ LL ELP+ +RLIGLRVT+
Sbjct: 383 GKTITLKYKLDTYQVFTRAKSFDRWISTRKEDLFAIGKELLMPELPLRVRLIGLRVTKLK 442
Query: 442 EDKVRAPS 449
+ K A S
Sbjct: 443 DLKKEADS 450
>gi|296413468|ref|XP_002836435.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630254|emb|CAZ80626.1| unnamed protein product [Tuber melanosporum]
Length = 606
Score = 330 bits (846), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 200/519 (38%), Positives = 301/519 (57%), Gaps = 38/519 (7%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD++KV +++Y SKGSK+F++EER++ + ++IE ++ R L S +S +
Sbjct: 31 KAGQDKVDQKKVGEIIYNASKGSKFFKHEERRDQQLTKRIEIIQRRKKHLESLDLSSQIR 90
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ I EA+RDLS+ +HVD DAFYA+VE L P LK PMAVG ++ T NY+AR
Sbjct: 91 RVDEEIAASEASRDLSQIIVHVDCDAFYASVEELDRPELKEVPMAVGG-GVLTTCNYKAR 149
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
FGVR+ M G+IA++LCP+L+F+P F KYT ++ R++ KYD + AAS+DEA+L+I
Sbjct: 150 GFGVRSGMAGYIAKQLCPQLVFLPLSFHKYTAKAEEIREILVKYDGRYEAASVDEAFLNI 209
Query: 209 TEVCRE-RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 267
T + R + ++ E+LR V E ++ SAG+APN LAKV S+ NKPNGQF +PND
Sbjct: 210 TGYLEDHRDTTPDKVVEQLRREVLEHTKISVSAGIAPNARLAKVASNQNKPNGQFRIPND 269
Query: 268 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLS 327
R AVM F+ +LP+R++ G+G+V E L D G+ T ++ +L +FS F L+
Sbjct: 270 REAVMHFMRTLPVRRVNGVGRVFEREL-DAVGVRTWGDVFALRGILSKLFSKKAWSFLLN 328
Query: 328 VGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 385
LGLG T P A + RKS+ +E TF L KL A+ L D+ L GRT
Sbjct: 329 SYLGLGRTCIHPVAEYERKSLGTESTFKDLSGPGPLRDKLRSTAQELERDLLAANLAGRT 388
Query: 386 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-----PVSLRLIGLRVTQF 440
+T+K+K +++V +R L + ISS+ED+ HA LL+ EL P +RL+GLRVTQ
Sbjct: 389 ITVKVKLHTYQVHSRQKALHRVISSAEDLYNHALPLLQ-ELEGEFQPFKIRLMGLRVTQL 447
Query: 441 N-------------------EDKVRAPSDPTQKTLTNFMTSGHASKKI-----VGDQNSL 476
+ E + + P + +L ++SGH S+++ + + +L
Sbjct: 448 SSTRKGTGKMNFFKNLPQSIEGEAEWEAWP-EGSLDGLLSSGHLSQEVQDEEQLAIEEAL 506
Query: 477 GSDINDDCLIDDKETSVSLDVSETNNYEFGDPVCDNSLP 515
+ +N ++ S + +E P+C SLP
Sbjct: 507 NASLNMPARDTPQDPSPPPKMVLKERWEC--PICARSLP 543
>gi|322700161|gb|EFY91917.1| DNA polymerase kappa [Metarhizium acridum CQMa 102]
Length = 501
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 176/428 (41%), Positives = 262/428 (61%), Gaps = 8/428 (1%)
Query: 8 CASSSENPRPWQSYHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQ 66
C S+ YH + + KAG + VD+ KV +++Y S+GSK+F EE ++ + +
Sbjct: 16 CPEESDGISKTLKYHLLGPSLTKAGQEKVDQSKVSEIIYNASRGSKFFNREEVRDKILTK 75
Query: 67 KIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPS 126
KIE + AR +L ++ + AD+ I + E +RDL++ +H+D DAFYAAVE L P
Sbjct: 76 KIEQILARKRQLEQADLTQELRSADRVIHQFELSRDLTQHIVHIDCDAFYAAVEQLERPE 135
Query: 127 LKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTR 186
LK P AVG ++ T NY AR+FG R+ M GF+A+KLCP LI + +F KYT + R
Sbjct: 136 LKEVPFAVGG-GVLTTCNYVARQFGCRSGMAGFVAKKLCPSLILIKPNFQKYTAKAQEIR 194
Query: 187 KVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNR 246
++ YDP F +AS+DEAYL+ITE C ++ + E+ E++R +Y++ +T SAG+A N
Sbjct: 195 EILADYDPRFESASIDEAYLNITEYCHDKHATPAEVIEQMRREIYQKTDITVSAGIAANT 254
Query: 247 LLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM 306
LAK+CS+INKPNGQ+VLP+DR ++MTF+ LP RK+ GIG+V E L ++ G+ TC ++
Sbjct: 255 KLAKICSNINKPNGQYVLPSDRTSIMTFMRDLPTRKVNGIGRVLERELLEL-GVRTCGDI 313
Query: 307 LQKGSLLCAVFSHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRK 364
+ L +F T +F +S LGLG T P + RKSI +E TF D L K
Sbjct: 314 YEHRKYLNLLFGDKTFEFLISCYLGLGRTRIQPAEEYERKSIGTESTFRELSDPGNLREK 373
Query: 365 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL--- 421
L AE L DM++ +GRTL LK+K +FEV TR + + I S++++ + +
Sbjct: 374 LRWTAEELEKDMERVHCKGRTLCLKIKLHTFEVLTRQAVMPRAICSADELYNFSLPILTK 433
Query: 422 LKAELPVS 429
L+ E+P S
Sbjct: 434 LEQEMPES 441
>gi|453088846|gb|EMF16886.1| DNA-directed polymerase kappa [Mycosphaerella populorum SO2202]
Length = 660
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 177/422 (41%), Positives = 257/422 (60%), Gaps = 12/422 (2%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVIS---- 84
K+G DGVD+ V +++Y+ SKGSKYF NEE ++ + KI + A+ +L I
Sbjct: 32 KSGQDGVDQTAVSEIIYQASKGSKYFANEENRDKTLTLKINSLLAKKRELQRIEIQGGLK 91
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTAN 144
K AD I ELE RDLS++ +H+D DAFYAAVE L NP LK P AVG ++ T N
Sbjct: 92 KEMKRADDYIAELECKRDLSQTLVHIDCDAFYAAVEELDNPDLKNVPFAVGK-GVLTTCN 150
Query: 145 YEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA 204
YEAR++G R+ M GF+A KLCP+LI VP +F KYT + R V +YDP F +AS+DEA
Sbjct: 151 YEARKYGCRSGMAGFVADKLCPQLIHVPLNFEKYTAKARQVRAVLEQYDPRFESASIDEA 210
Query: 205 YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 264
YL+IT+ C++ + + ++R V++E +T SAG+A N LAK+CS+ NKPNGQF L
Sbjct: 211 YLNITKYCQDHNMDPEDAVSQMREQVFQETKITISAGIAANAKLAKICSNKNKPNGQFKL 270
Query: 265 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 324
P++R +++F+ LP RK+ GIG+V E L D G+ TC ++ + +F +F
Sbjct: 271 PSERTTILSFMRDLPTRKVNGIGRVLEREL-DAIGVKTCGDIYSHRQYINRLFGEKAFEF 329
Query: 325 FLSVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 382
+ V LGLG T+ A R+S+ +E TF D L KL AE L D+++ +
Sbjct: 330 LMGVYLGLGRTDVKPAEEHARRSVGTESTFHDMSDPQELRDKLRRTAESLEEDLKRTEFK 389
Query: 383 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLIGLRVT 438
GRTL LK+K ++EV TR V K + +++++ ++ +L+ E P + LRL+GLR T
Sbjct: 390 GRTLCLKVKLHTYEVFTRQVQPPKAVFTADELYNYSLPMLQKLEKEYPGMKLRLMGLRCT 449
Query: 439 QF 440
Sbjct: 450 HL 451
>gi|395333149|gb|EJF65527.1| DNA/RNA polymerase [Dichomitus squalens LYAD-421 SS1]
Length = 669
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 180/426 (42%), Positives = 267/426 (62%), Gaps = 8/426 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHM-RARCAKLTSPVISHYQ 87
KAG+ D+ ++ +++ E SKGSK++ENE+RK+ + ++IE + + R + + +
Sbjct: 29 KAGL-AKDQTEINRIIAEASKGSKFYENEKRKDKDLTERIERIIKHRDEVIKGVDLHQVE 87
Query: 88 KVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEA 147
+ DK I +LEA RDLS+ +HVDMDAF+A+VE L NP L KP VG ++ TA+YEA
Sbjct: 88 QGVDKLIAQLEAQRDLSQVIVHVDMDAFFASVELLDNPDLASKPFGVGG-GVMSTASYEA 146
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R++GVR+ MP FIA+KLCP+LI + + + +Y+ S+ V +YDPN DE YL+
Sbjct: 147 RKYGVRSGMPTFIAKKLCPDLIVLKSHYDRYSEMSNKVMAVCRRYDPNMSVVGCDEGYLN 206
Query: 208 ITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPN-RLLAKVCSDINKPNGQFVLPN 266
IT C E G++ E +++R ++EE LT SAG+APN ++LAK+CSD NKPNGQF L
Sbjct: 207 ITSYCEEHGMTPDECVQDMRQKIHEETALTASAGIAPNKKMLAKICSDRNKPNGQFKLDF 266
Query: 267 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 326
+ A+ F+ L IRK+ G+G+V E +L + GI TC ++ + +L + F L
Sbjct: 267 EARAIKAFMRDLSIRKVPGVGRVNERLLESI-GIKTCGDIYAQRGILSLMDKQFGLMFLL 325
Query: 327 SVGLGLGS--TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 384
LG+ S Q +KSI +ERTF+ D A ++ KL E+A LS DM + G+
Sbjct: 326 QSYLGIASNVVEPWQREEKKSIGAERTFNTLSDTAKIHAKLEEVAAELSKDMTEGQWTGK 385
Query: 385 TLTLKLKTASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRVTQFNED 443
T+TLK K +F+V TRA +L K++S +E++ LLK ELP++LRLIGLRVT+ +
Sbjct: 386 TITLKYKLNTFQVCTRAKSLDKWLSGRAEELFTLGKELLKPELPLTLRLIGLRVTKLKDL 445
Query: 444 KVRAPS 449
K A S
Sbjct: 446 KAEAES 451
>gi|452848121|gb|EME50053.1| hypothetical protein DOTSEDRAFT_164998 [Dothistroma septosporum
NZE10]
Length = 640
Score = 329 bits (843), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 184/431 (42%), Positives = 263/431 (61%), Gaps = 13/431 (3%)
Query: 21 YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKL- 78
YH + + K+G DGVD++KV +++YE SKGSKYF NEE K+ + KI M A+ ++
Sbjct: 41 YHLLGPSLTKSGQDGVDQKKVSEIIYEASKGSKYFNNEEVKDKNLTVKINRMLAKKREMQ 100
Query: 79 ---TSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG 135
+ + K AD I ELE RDLS++ +H+D DAFYAAVE L P LK P AVG
Sbjct: 101 RIEAQGGLKNDLKKADDYIAELEYGRDLSQAVVHIDCDAFYAAVEELDRPELKEVPFAVG 160
Query: 136 TMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPN 195
+ ++ T NY AR+FG R+ M GF+A KLCP+LI +P +F KYT + R V +YDP
Sbjct: 161 -VGVLTTCNYVARKFGCRSGMAGFVADKLCPQLIHLPLNFEKYTSKAKEVRAVLEQYDPR 219
Query: 196 FMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
F +AS+DEAYL++T+ C E + + ++R V++E +T SAG+A N LAK+CS+
Sbjct: 220 FESASIDEAYLNLTQYCEEHHMEPEDAVSQMRAQVFQETRITISAGIAANAKLAKICSNK 279
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 315
NKPNGQF LP DR +++ F+ +L RK+ GIG+V E L D GI TC ++ + +
Sbjct: 280 NKPNGQFKLPADRASILHFMRNLSTRKVNGIGRVLEREL-DAIGIKTCGDIFPQRHYINR 338
Query: 316 VFSHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLS 373
+F T +F + V LGLG T+ P F RKS+ +E +F D L KL AE L
Sbjct: 339 LFGEKTFEFLMGVHLGLGRTDVRPIEEFGRKSVGTESSFKDISDPNELRDKLRWTAEELE 398
Query: 374 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VS 429
D+Q+ +GRTL LK+K ++EV TR V K + +++D+ + +L+ E P +
Sbjct: 399 KDLQRTEFKGRTLCLKVKLHTYEVFTRQVQPPKAVYTADDLYNFSLPMLQKLEQEFPNMK 458
Query: 430 LRLIGLRVTQF 440
LRL+GLR T
Sbjct: 459 LRLMGLRCTHL 469
>gi|116200590|ref|XP_001226107.1| hypothetical protein CHGG_10840 [Chaetomium globosum CBS 148.51]
gi|88175554|gb|EAQ83022.1| hypothetical protein CHGG_10840 [Chaetomium globosum CBS 148.51]
Length = 632
Score = 328 bits (842), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 180/424 (42%), Positives = 260/424 (61%), Gaps = 14/424 (3%)
Query: 29 KAGMDGVDKEKV------QKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPV 82
KAG VD+ K + ++GSK+F +EE ++ + KIE + A+ L +
Sbjct: 42 KAGQGSVDQSKACSPTQHRSAPIRANRGSKFFNHEETRDKSLTAKIEAILAKKRNLETLD 101
Query: 83 ISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICT 142
++ + AD + +LE +RDL++ +H+D DAFYAAVE L P LK P AVG ++ T
Sbjct: 102 LARELRAADNLLAQLELSRDLTQHIVHIDCDAFYAAVEQLDRPELKKLPFAVGG-GVLTT 160
Query: 143 ANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLD 202
NY AR+FG R+ M GF+A+KLCPELI +P +F KY + R++ +YDP F +AS+D
Sbjct: 161 CNYVARKFGCRSGMAGFVAKKLCPELILLPLNFDKYNAKAAEVREILAEYDPRFESASID 220
Query: 203 EAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 262
EAYL+ITE C E + ++ +LR+ ++E+ +T SAG+A N LAK+CS++NKPNGQF
Sbjct: 221 EAYLNITEYCAEHDMDPADVVSKLRSEIHEKTHITVSAGIAANARLAKICSNMNKPNGQF 280
Query: 263 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 322
VLP DR+A+M+F+ L R++ GIG+V E L V GI TC ++ + L +F
Sbjct: 281 VLPRDRVAIMSFMRDLSCRQVNGIGRVLERELASV-GIKTCGDIYAQRQYLDRLFGQKAY 339
Query: 323 DFFLSVGLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 380
+F L LGLG TN A RKS+ +ERTF D ALL KL AE L +DM+K
Sbjct: 340 EFLLHCHLGLGRTNIQPAEDYERKSVGTERTFRDLGDPALLREKLRRTAEELESDMRKAE 399
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLR 436
+GRTL LK+K +FEV TR V K + ++D+ ++ + L+ E+P + LRL+GLR
Sbjct: 400 CKGRTLCLKVKLHTFEVLTRQVVPPKAVHLADDLYNYSLPMLAKLEQEIPGMKLRLMGLR 459
Query: 437 VTQF 440
TQ
Sbjct: 460 CTQL 463
>gi|327298651|ref|XP_003234019.1| DNA-directed polymerase kappa [Trichophyton rubrum CBS 118892]
gi|326464197|gb|EGD89650.1| DNA-directed polymerase kappa [Trichophyton rubrum CBS 118892]
Length = 604
Score = 328 bits (841), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 172/414 (41%), Positives = 253/414 (61%), Gaps = 8/414 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD++KV +V+Y SKGSK+F +E ++ + +KI+ + A KL +SH +
Sbjct: 42 KAGQDKVDQQKVSEVIYNASKGSKFFNHERARDQLLTEKIQKILAHKEKLEKQDLSHNIR 101
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+AD+ I +LE RDLS+S +H+D DAF+AAVE L P L+ PMAVG ++ T NY AR
Sbjct: 102 LADEYIADLELRRDLSQSIVHIDCDAFFAAVEELDRPELRDVPMAVGK-GVLTTCNYHAR 160
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M F+A+KLCPELI +P ++ KYT + R + YDP F +AS+DEAYL+I
Sbjct: 161 KFGCRSGMASFVAKKLCPELICIPQNYEKYTAKAREIRAILANYDPEFESASVDEAYLNI 220
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ C + ++LR V+ + G+T SAG+A N +AK+ S+ NKPNGQF +PN+R
Sbjct: 221 TQYCAANNVDPQAAVQQLRGEVFAQTGVTVSAGIAANAKIAKISSNWNKPNGQFYVPNER 280
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F++ +P+RK+ G+G+V E L G+ TC ++ Q +L +F F +
Sbjct: 281 AAIMEFMTKIPVRKVNGVGRVFEREL-GAIGVTTCGDIYQYRGMLSQLFGQKAFCFLMQC 339
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T P F RKS+ +E TF+ D L KL A L D++ G +GRTL
Sbjct: 340 YLGLGRTRIQPAGTFPRKSVGTEHTFADLSDFHQLQEKLRWTASALEKDLRAAGTKGRTL 399
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLR 436
LK+K +FEV +R K + ++D+ K++ LL K + +RL+GLR
Sbjct: 400 VLKVKLHTFEVLSRQTVAPKPLLLADDLYKYSLPLLTKLHKERPQMKIRLMGLR 453
>gi|449298338|gb|EMC94353.1| hypothetical protein BAUCODRAFT_111160 [Baudoinia compniacensis
UAMH 10762]
Length = 628
Score = 328 bits (840), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 183/431 (42%), Positives = 264/431 (61%), Gaps = 13/431 (3%)
Query: 21 YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKL- 78
YH + + K+G DGVD+++V +++Y SKGSKYF NEE K+ + KI + A+ +L
Sbjct: 33 YHLLGPSLTKSGQDGVDQKRVSEIIYNASKGSKYFNNEEHKDKSLTIKINRILAKKRELQ 92
Query: 79 ---TSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG 135
+ + K AD I E E RDLS+ +HVD DAFYAAVE L P LK P AVG
Sbjct: 93 RIEAQGGLKNEMKRADDYIAEFEYGRDLSQVVVHVDCDAFYAAVEELDRPELKEVPFAVG 152
Query: 136 TMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPN 195
+ ++ T NY AR++G R+ M GF+A KLCPELI +P +F KYT + R V +YDP
Sbjct: 153 -VGVLTTCNYIARKYGCRSGMAGFVADKLCPELIHLPLNFEKYTAKAKEVRAVLEQYDPR 211
Query: 196 FMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
F +AS+DEAYL+IT+ C++ + E ++R V+E A +T SAG+A N LAK+CS+
Sbjct: 212 FESASIDEAYLNITQYCQDHDMDPEEAVAQMRAQVFEHAKITISAGIAANAKLAKICSNK 271
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 315
NKPNGQ+ LP++R +++ F+ LP RK+ GIG+V E L D GI TC ++ ++ L
Sbjct: 272 NKPNGQYRLPSERTSILIFMRDLPTRKVNGIGRVFEREL-DAIGIKTCGDIYEQRHYLSR 330
Query: 316 VFSHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLS 373
+F +F +SV LGLG T+ P + RKS+ +E TF D L KL AE L
Sbjct: 331 LFGDKAFEFLMSVYLGLGRTDVRPVEEYERKSVGTESTFHDISDPKELRDKLRWTAEELE 390
Query: 374 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VS 429
D+++ +GRTL LKLK ++EV +R V K + +++D+ + +L+ E+P +
Sbjct: 391 KDLKRTEFKGRTLVLKLKLHTYEVFSRQVQPPKAVYTADDLYHFSLPMLQKVEKEMPGMK 450
Query: 430 LRLIGLRVTQF 440
LRL+GLR T
Sbjct: 451 LRLMGLRCTHL 461
>gi|336467327|gb|EGO55491.1| hypothetical protein NEUTE1DRAFT_85852 [Neurospora tetrasperma FGSC
2508]
gi|350288043|gb|EGZ69279.1| DNA/RNA polymerase [Neurospora tetrasperma FGSC 2509]
Length = 646
Score = 328 bits (840), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 176/422 (41%), Positives = 257/422 (60%), Gaps = 8/422 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y S+GSKYF EE ++ + KI+ + ++ +L + H +
Sbjct: 53 KAGQDTVDQLKVSEIIYNASRGSKYFNREEARDRSLTAKIDQILSKKRELEKLDLGHELR 112
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
VA I +LE +RDLS+ +HVD DAFYAAVE L P LK P AVG ++ T NY AR
Sbjct: 113 VAGSLIAQLELSRDLSQYIVHVDCDAFYAAVEQLDRPELKDLPFAVGG-GVLTTCNYVAR 171
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
++G R+ M GF+A+KLCPELI +P F KYT + R++ +YDPNF +AS+DEAYL+I
Sbjct: 172 KYGCRSGMAGFVAKKLCPELILLPISFDKYTAKAGEVREIIAEYDPNFESASIDEAYLNI 231
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ C ++ + ++R+ ++E +T SAG+A N LAK+CS++NKPNGQ+VLP++R
Sbjct: 232 TDYCTRHAMAPADAVAKMRSDIHERTSITVSAGIAANTRLAKICSNMNKPNGQYVLPSER 291
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A++ F+ LP RK+ GIG+V E L GI+T ++ L +F ++F +
Sbjct: 292 GAILEFMRDLPCRKVNGIGRVFEREL-AALGIHTLGDIYSNRQYLRNLFGEKASEFLVHC 350
Query: 329 GLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T A RKS+ +E TF V D L KL +E L D+++ +GRTL
Sbjct: 351 FLGLGRTCVKPAETYERKSVGTESTFRVMSDPTELRNKLRRTSEDLEQDLRRAECKGRTL 410
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNE 442
LK+K +FEV TR L + + + D+ HA + L+ E+P + LRL+GLR T
Sbjct: 411 CLKVKLHTFEVLTRQTVLPRAVHLATDLYSHALPMLTKLEQEIPGMKLRLMGLRCTNLAT 470
Query: 443 DK 444
K
Sbjct: 471 TK 472
>gi|393245146|gb|EJD52657.1| IMS-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 556
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 191/471 (40%), Positives = 278/471 (59%), Gaps = 7/471 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHM-RARCAKLTSPVISHYQ 87
KAG+ D+ + V+ E+SKGSK++ENE+RK+ + +KI + + R L I +
Sbjct: 19 KAGL-ATDQSAINAVIAEVSKGSKFYENEKRKDQAVTEKIAKIHKERDELLKYANIQRIE 77
Query: 88 KVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEA 147
D I+ELEA+RDLS+ +H DMD+F+A+VE L +PSLK KP VG S++ TA+Y A
Sbjct: 78 HQVDSMIVELEASRDLSQYIVHFDMDSFFASVEILLDPSLKEKPFVVGG-SVVSTASYAA 136
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FGVR+ M F+A+KLCP+L+ + +Y+ S + YDP A DE YL+
Sbjct: 137 RKFGVRSGMATFVAQKLCPQLVCIHQSHDRYSTVSKEIMTIIRNYDPEMCVAGCDEGYLN 196
Query: 208 ITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 267
IT C E ++ + +LR V+E LT SAG+APN LAK+CSD NKPNGQF LP +
Sbjct: 197 ITAYCDENDMTPDDCVAQLRREVFEATKLTVSAGIAPNMTLAKICSDKNKPNGQFHLPFE 256
Query: 268 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLS 327
R ++ F+ LPIRK+ G+G+V E +L D GI TC ++ + + + H + D+ L
Sbjct: 257 RDKIIEFMRDLPIRKVPGVGRVQERML-DSIGIRTCGDVYTHRATIHLLGKHFSLDYLLH 315
Query: 328 VGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 385
LGLGST P AR RKS+ ERTF+ D+ L KL IA L D++ G G+T
Sbjct: 316 AYLGLGSTVVQPGAREERKSVGVERTFNPISDQDQLVAKLENIAHTLEEDLEHGGWAGKT 375
Query: 386 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKV 445
+TLK K +F+ TRA + +Y++ ED+ A LL AE+P+ +RLIG+RVT + K+
Sbjct: 376 VTLKYKLDTFQSFTRAKSCPRYVNKKEDLFSIAKELLLAEMPLCIRLIGIRVTNLKDLKI 435
Query: 446 RAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLD 496
A + ++ L + S + +K+ + + DD L ETS S D
Sbjct: 436 -AENSGIKRFLKHAPGSPNKKRKLSHGELDGVAPAGDDNLKPAAETSGSSD 485
>gi|402086039|gb|EJT80937.1| DNA polymerase kappa [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 624
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 178/418 (42%), Positives = 253/418 (60%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ K+ +++Y SKGSKYF E ++ + +KIE + + L + +S +
Sbjct: 34 KAGQDSVDQSKISEIIYNASKGSKYFAREAERDQILTEKIERINQKKVHLDTLDLSRDVR 93
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
VAD I E E RDLS+ +HVD DAFYAA E L P L P AVG ++ T NY AR
Sbjct: 94 VADSWIAERELCRDLSQYIVHVDADAFYAACELLDRPELADVPFAVGG-GVLTTCNYVAR 152
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG+R+ M GF+A+K+CPEL+ + +F KY + R+V +YD F +AS+DEAYL+I
Sbjct: 153 KFGIRSGMAGFVAKKICPELVLLKLNFDKYNAKAAEVREVLAEYDARFESASIDEAYLNI 212
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ C + G+ ++ +++R V+ +T SAG+A N LAK+CS++NKPNGQFVLPN+R
Sbjct: 213 TQYCADHGMGPADVVQQMRAEVHRRTSITVSAGIAANAKLAKICSNMNKPNGQFVLPNER 272
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F+ SLP RK+ GIG+V E L + G+ TC ++ + L +F F +
Sbjct: 273 PAIMEFMGSLPCRKVNGIGRVLERELAAI-GVVTCGDVYPERKYLTKLFGEKAFRFLVDC 331
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T P + RKS+ +E TFS L K+ A L DM+K RGRTL
Sbjct: 332 YLGLGRTIIRPAEEYERKSVGTESTFSDISGGQKLREKMRWTAGELEKDMKKAECRGRTL 391
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
LK+K A+FEV TR V L + I ++D+ K A + L+ E P ++ RL+GLR T
Sbjct: 392 VLKVKLATFEVLTRQVILPRSIQLADDLYKFALPMLAKLEKEFPRLTCRLLGLRCTNL 449
>gi|259485643|tpe|CBF82838.1| TPA: DNA-directed polymerase kappa, putative (AFU_orthologue;
AFUA_7G01270) [Aspergillus nidulans FGSC A4]
Length = 612
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 172/418 (41%), Positives = 256/418 (61%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y SKGSK+F +E+ ++ + +KI+ + +L S +S +
Sbjct: 37 KAGQDSVDQRKVSEIIYNASKGSKFFNHEQIRDNVLTEKIQRILKEKTRLESLNLSVDLR 96
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+AD+ E+E+TRDLS+ +HVD DAF+AAVE L P LK PMAVG ++ T NYEAR
Sbjct: 97 LADQVFAEIESTRDLSQYVVHVDCDAFFAAVEELDRPELKTVPMAVGK-GVLTTCNYEAR 155
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M F+A+KLCP+LI +P ++ KYT + R + +YDP F +AS+DEAYL+I
Sbjct: 156 KFGCRSGMASFVAKKLCPQLICLPQNYEKYTAKAQEIRAILAQYDPQFESASIDEAYLNI 215
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T CRE+ + E +R + E+ ++ SAG+A N +AK+CS+ NKPNGQF +PN++
Sbjct: 216 TAYCREKQLDPDEAVSRMRAEILEKTKISVSAGIAANAKIAKICSNRNKPNGQFRVPNEK 275
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F+ LP+RKI G+G+V E L D GI TC ++ + + L +F F
Sbjct: 276 NAIMEFMRDLPMRKINGVGRVFEREL-DSIGIKTCGDIFPQRAYLAKLFGEKALHFLAQC 334
Query: 329 GLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LG+G T A RKS+ +ERTF + KL A+ L D+ + GRTL
Sbjct: 335 YLGVGRTKIQPAESYERKSVGTERTFHEISKREEFREKLWSCAQELEKDLSRTQFMGRTL 394
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
LK+K A+FEV TR + +S+++D+ A + L+ E+P + LRL+G+R T
Sbjct: 395 VLKVKLATFEVLTRQYQPARAVSTAKDLFTSALPMLEKLEKEIPNMKLRLLGIRCTNL 452
>gi|320164110|gb|EFW41009.1| polymerase [Capsaspora owczarzaki ATCC 30864]
Length = 974
Score = 326 bits (835), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 175/388 (45%), Positives = 239/388 (61%), Gaps = 33/388 (8%)
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTAN 144
H D+++ +EA R+L R +H+DMD F+AAVE +PSL KPMAVG+ SM+ TAN
Sbjct: 333 HIYATVDRQVNLMEAARNLDRVIVHLDMDMFFAAVEQRDDPSLADKPMAVGSQSMLSTAN 392
Query: 145 YEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA 204
Y AR+FGVR+AMPG+I KLCPEL+ V +F KY S R++ +YDP+F AASLDEA
Sbjct: 393 YVARKFGVRSAMPGYIGLKLCPELVIVRPNFEKYAQVSTQVREILAQYDPHFTAASLDEA 452
Query: 205 YLDITEVCRE---RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ 261
YLD+T R+ G+S ++ E+R + LT SAG+APN +LAK+CSD+NKPNGQ
Sbjct: 453 YLDLTRHMRQVVPDGVSSADVVREIRGKIQAATQLTASAGIAPNGMLAKICSDLNKPNGQ 512
Query: 262 FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST 321
+ LP D + +F++ LP+RK+ GIGKVTE +L + GI TCE+M L +FS +
Sbjct: 513 YHLPGDLEQLKSFVAKLPVRKVSGIGKVTERML-NGLGIVTCEDMFAHRYDLFQLFSPIS 571
Query: 322 ADFFLSVGLGLGSTN-----------TPQARF----------RKSISSERTFSVTEDKAL 360
DFFL V LG GS+ TP A F RKSIS ERTF
Sbjct: 572 FDFFLRVSLGAGSSRYEEAVKADAVATPTAAFGFGFAVPDNDRKSISVERTFREINTPTA 631
Query: 361 LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV 420
L K E+ L+AD+ LRGRT+T+KLK F + TRA + Q+YISS+ ++ + AS
Sbjct: 632 LLAKCEELCHKLAADVNSCKLRGRTVTVKLKMVDFRMFTRAASSQRYISSASEMFELASK 691
Query: 421 LLKAEL--------PVSLRLIGLRVTQF 440
+L+ E+ P+ LRL+G+R++
Sbjct: 692 ILQDEIQQSERAGGPLRLRLMGVRLSAL 719
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 38/50 (76%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKL 78
KAG++ VDK++ ++YE S+ S++F+NE RK+A + Q++E +R++ A +
Sbjct: 185 KAGLESVDKQRANAIIYEASRNSRFFKNEVRKDASVTQRLESLRSQLAAI 234
>gi|403367013|gb|EJY83315.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 699
Score = 325 bits (834), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 172/431 (39%), Positives = 264/431 (61%), Gaps = 21/431 (4%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENE-ERKEA------FIQQKIEHMRARCAK 77
Y KAGMD VD+ K+Q+++ + SKGS Y+ E ER +A QKIE + + K
Sbjct: 35 YIAHKAGMDSVDQNKIQQLIIDASKGSSYYRKEMERTQAAKDKAKLYSQKIEQHQ-KNEK 93
Query: 78 LTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM 137
L + +++ I E+E RDL+R+W+H+DMD FYAAVE NP+L P+A+G
Sbjct: 94 LWEKTVKEVRQM----IKEMERDRDLNRTWVHIDMDMFYAAVEIRDNPALANVPLAIGGE 149
Query: 138 SMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFM 197
SMI TANY AR+FGVR+AMPGFIA+KLCP+L+ V +F KY S + + + +YDP+F
Sbjct: 150 SMISTANYVARKFGVRSAMPGFIAKKLCPDLVLVECNFKKYKEVSKVFQAILYEYDPHFE 209
Query: 198 AASLDEAYLDITEVCRERGISG----IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCS 253
+ DEA LD+T ++ +++AEE+RT ++E LTCSAG++ N++LAK+C+
Sbjct: 210 SMGSDEANLDLTNYLITHNLNDEDNKLKVAEEIRTKIFEATQLTCSAGISCNKMLAKICT 269
Query: 254 DINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLL 313
D+NKPNGQF L D+ ++ F+ L +RKI GIG++TE +L+ + GI TC++++ K +
Sbjct: 270 DMNKPNGQFYLKPDKEVILDFMGKLKVRKIPGIGRMTELVLQSL-GIETCQQIIDKAPEI 328
Query: 314 CAVFSHSTADFFLSVGLGLGST---NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAE 370
+FS T+ F + LG+ +KSIS TF K++EI E
Sbjct: 329 QIIFSEKTSYFLIRAALGIARNFHEEDDDDACQKSISVSTTFRPLYKLDQFKDKISEICE 388
Query: 371 MLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-S 429
L+ M K + G T+TL+LK+ F +++TL +YI +SED+ + LL+ + P +
Sbjct: 389 DLAQRMDKRKIGGLTITLELKSTEFNNVNKSMTLNRYIWTSEDMRTYCHQLLEMQWPFPA 448
Query: 430 LRLIGLRVTQF 440
+RLIG++++
Sbjct: 449 VRLIGVKMSNL 459
>gi|367047493|ref|XP_003654126.1| hypothetical protein THITE_160571 [Thielavia terrestris NRRL 8126]
gi|347001389|gb|AEO67790.1| hypothetical protein THITE_160571 [Thielavia terrestris NRRL 8126]
Length = 618
Score = 325 bits (834), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 176/418 (42%), Positives = 258/418 (61%), Gaps = 13/418 (3%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D V + ++Y SKGSK+F +EE ++ + KI+ + A+ +L + +S +
Sbjct: 43 KAGQDSVSE-----IIYNASKGSKFFNHEEARDKSLTAKIDSILAKKRQLEARDLSRELR 97
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD + ELE +RDL++ +H+D DAFYAAVE L P LK P AVG ++ T NY AR
Sbjct: 98 AADNLLAELELSRDLTQHIVHIDCDAFYAAVEQLDRPELKDLPFAVGG-GVLTTCNYVAR 156
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
FG R+ M F+A+KLCP+LI +P +F KY + R++ YDP F +AS+DEAYL+I
Sbjct: 157 TFGCRSGMAAFVAKKLCPQLIILPLNFDKYNAKAAEVREILADYDPRFESASIDEAYLNI 216
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
TE C E + ++ +LR ++++ +T SAG+A N LAK+CS++NKPNGQFVLP +R
Sbjct: 217 TEYCAEHDMDPADVVSQLRREIHQKTHVTVSAGIAANARLAKICSNMNKPNGQFVLPRER 276
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F+ LP RK+ G+G+V E L V GI TC ++ + L +F T +F L
Sbjct: 277 TAIMAFMRDLPCRKVNGVGRVLERELASV-GIKTCGDIYAQRQYLAQLFGQKTYEFLLRC 335
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T+ P + RKS+ +E TF D L RKL + AE L AD+++ +GRTL
Sbjct: 336 YLGLGRTHIQPADEYERKSVGTESTFREMSDPDQLRRKLRQTAEELEADLRRAECKGRTL 395
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
LK+K +FEV TR V K + ++D+ ++ + L+ E+P ++LRL+GLR T
Sbjct: 396 CLKVKLHTFEVLTRQVVPPKAVHLADDLYSYSLPMLAKLEQEIPGLTLRLMGLRCTHL 453
>gi|398412111|ref|XP_003857385.1| hypothetical protein MYCGRDRAFT_107195 [Zymoseptoria tritici
IPO323]
gi|339477270|gb|EGP92361.1| hypothetical protein MYCGRDRAFT_107195 [Zymoseptoria tritici
IPO323]
Length = 653
Score = 325 bits (833), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 181/431 (41%), Positives = 261/431 (60%), Gaps = 13/431 (3%)
Query: 21 YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKL- 78
YH + + K+G DGVD++KV +++Y SKGSKYF NEE K+ + KI + A+ +L
Sbjct: 37 YHLLGPSLTKSGQDGVDQKKVSEIIYNASKGSKYFNNEEVKDKQLTVKINRILAKKRELE 96
Query: 79 ---TSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG 135
+ + + K AD I +LE RDL+++ +HVD DAFYAAVE L P LK P AVG
Sbjct: 97 RIEAAGGLKNEMKKADDYIADLEYGRDLTQAIVHVDCDAFYAAVEELDRPELKEVPFAVG 156
Query: 136 TMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPN 195
++ T NY AR+FG R+ M GF+A +LCPELI +P +F KYT + R V +YDP
Sbjct: 157 K-GVLTTCNYLARKFGCRSGMAGFVADQLCPELIHIPLNFEKYTAKAKEVRSVLEQYDPR 215
Query: 196 FMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
F ++S+DEAYL+IT+ C++ +S + ++R V+EE +T SAG+A N LAK+CS+
Sbjct: 216 FESSSIDEAYLNITQYCKKHDMSPEDAVSQMRAQVFEETKITVSAGIAANAKLAKICSNK 275
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 315
NKPNGQ+ LP+DR +M F+ LP RK+ G+G+V E L D GI TC ++ + +
Sbjct: 276 NKPNGQYRLPSDRTTIMGFMRDLPTRKVNGVGRVLEREL-DAIGIKTCGDIGPQRHYINR 334
Query: 316 VFSHSTADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLS 373
+F +F + V LGLG T A RKS+ +E TF D L KL I++ L
Sbjct: 335 LFGEKAFEFLMGVHLGLGRTEVRPAGETERKSVGTESTFHDMSDPKELRDKLRWISDELE 394
Query: 374 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VS 429
D+Q+ +GRTL LK+K ++EV TR K + +++D+ V L++E P +
Sbjct: 395 KDLQRTEFKGRTLVLKVKLHTYEVLTRQFQPPKAVYTADDLYHFGLPMLVKLESEHPGMK 454
Query: 430 LRLIGLRVTQF 440
LRL+GLR T
Sbjct: 455 LRLMGLRCTHL 465
>gi|326472504|gb|EGD96513.1| DNA-directed polymerase kappa [Trichophyton tonsurans CBS 112818]
gi|326484790|gb|EGE08800.1| DNA-directed polymerase kappa [Trichophyton equinum CBS 127.97]
Length = 604
Score = 325 bits (832), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 171/414 (41%), Positives = 252/414 (60%), Gaps = 8/414 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD++KV +++Y SKGSK+F +E ++ + +KI+ + A KL +SH +
Sbjct: 42 KAGQDKVDQQKVSEIIYNASKGSKFFNHERARDQLLTEKIQKILAHKKKLEKQDLSHSIR 101
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+AD+ I +LE RDLS+S +H+D DAF+AAVE L P L+ PMAVG ++ T NY AR
Sbjct: 102 LADEYIADLELRRDLSQSIVHIDCDAFFAAVEELDRPELRDVPMAVGK-GVLTTCNYHAR 160
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M F+A+KLCPELI +P ++ KYT + R + YDP F +AS+DEAYL+I
Sbjct: 161 KFGCRSGMASFVAKKLCPELICIPQNYEKYTAKAREIRAILANYDPEFESASVDEAYLNI 220
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ C + ++LR V+ + G+T SAG+A N +AK+ S+ NKPNGQF +PN+R
Sbjct: 221 TQYCAANNVDPQAAVQQLRGEVFAQTGVTVSAGIAANAKIAKISSNWNKPNGQFYVPNER 280
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F++ +P+RK+ G+G+V E L GI TC ++ Q +L +F F +
Sbjct: 281 AAIMEFMTKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQYRGMLSQLFGQKAFCFLMQC 339
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T P F RKS+ +E TF+ D L KL A L D++ +GRTL
Sbjct: 340 YLGLGRTRIQPAGTFPRKSVGTEHTFADLSDFDQLQEKLRWTASALEKDLRAAETKGRTL 399
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLR 436
LK+K +FEV +R K + ++D+ K++ LL K + +RL+GLR
Sbjct: 400 VLKVKLHTFEVLSRQTVAPKPLLLADDLYKYSLPLLTKLHKERPQMKIRLMGLR 453
>gi|389740094|gb|EIM81286.1| IMS-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 704
Score = 324 bits (831), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 190/444 (42%), Positives = 273/444 (61%), Gaps = 24/444 (5%)
Query: 26 TNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEH-MRARCAKLTSPVIS 84
+ KAG+ D+ + +++ E SKGS ++ENE+RK+ + ++IE ++ R L
Sbjct: 21 STTKAGL-AKDQTDINRIIAEASKGSAFYENEKRKDKDLTERIERILKERDEAL------ 73
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTAN 144
R ++L RDLS+ +HVDMDAFYA VE L NP L GKP VG M+ TA+
Sbjct: 74 --------RGVDL-PQRDLSQYIVHVDMDAFYANVELLHNPELAGKPFGVGK-GMLTTAS 123
Query: 145 YEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA 204
YEAR+FGVR+ MPGFIA+KLCPE++FVP + +Y+ S +F +YDPN +AAS+DE
Sbjct: 124 YEARKFGVRSGMPGFIAQKLCPEMVFVPINMARYSEMSKRVMSIFRQYDPNMLAASVDEG 183
Query: 205 YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 264
YL+ITE CR+ GI E ++R V +E LT SAG+A N++ +CSD NKPNGQF L
Sbjct: 184 YLNITEYCRDHGIDPEECVRQMRQQVVDETTLTVSAGIAANKV---ICSDKNKPNGQFRL 240
Query: 265 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 324
P++ A++ F+ L IRKI G+G+V E +L + GI TC ++ ++L + H F
Sbjct: 241 PHEPQAIIEFMRDLSIRKIPGVGRVNERLLESI-GIKTCGDIYTHRAVLSLMDKHFGLVF 299
Query: 325 FLSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 382
L LG+ S P R RKSI SERTF+ DK + +KL E+A L DM++ G
Sbjct: 300 MLRTHLGIASNVVQPWEREERKSIGSERTFNTLGDKDKILQKLDEVATELEEDMERGGWT 359
Query: 383 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 442
GRT+TLK K +++V TRA + ++I+ +D+ LL ELP+ LRLIGLRVT+ +
Sbjct: 360 GRTVTLKYKLDTYQVFTRAKSFNRWITKKDDLFATGRDLLLPELPLKLRLIGLRVTKLKD 419
Query: 443 DKVRAPSDPTQKTLTNFMTSGHAS 466
K + P+ ++ + TSG +S
Sbjct: 420 LKKKEPATGIKRFFESAGTSGPSS 443
>gi|403341934|gb|EJY70284.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 912
Score = 324 bits (831), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 170/427 (39%), Positives = 262/427 (61%), Gaps = 21/427 (4%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENE-ERKEA------FIQQKIEHMRARCAKLTSP 81
KAGMD VD+ K+Q+++ + SKGS Y+ E ER +A QKIE + + K+
Sbjct: 252 KAGMDSVDQNKIQQLIIDASKGSSYYRKEMERTQAAKDKAKLYSQKIEQHQ-KNEKIWEK 310
Query: 82 VISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMIC 141
+ +++ I E E RDL+R+W+H+DMD FYAAVE NP+L P+A+G SMI
Sbjct: 311 TVKEVRQM----IKEKERDRDLNRTWVHIDMDMFYAAVEIRDNPALANVPLAIGGESMIS 366
Query: 142 TANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASL 201
TANY AR+FGVR+AMPGFIA+KLCP+L+ V +F KY S + + + +YDP+F +
Sbjct: 367 TANYVARKFGVRSAMPGFIAKKLCPDLVLVECNFKKYKEVSKVFQAILYEYDPHFESMGS 426
Query: 202 DEAYLDITEVCRERGISG----IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 257
DEA LD+T ++ +++AEE+RT ++E LTCSAG++ N++LAK+C+D+NK
Sbjct: 427 DEANLDLTNYLITHNLNDEDNKLKVAEEIRTKIFEATQLTCSAGISCNKMLAKICTDMNK 486
Query: 258 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 317
PNGQF L D+ ++ F+ L +RKI GIG++TE +L+ + GI TC++++ K + +F
Sbjct: 487 PNGQFYLKPDKEVILDFMGKLKVRKIPGIGRMTELVLQSL-GIETCQQIIDKAPEIQIIF 545
Query: 318 SHSTADFFLSVGLGLGST---NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA 374
S T+ F + LG+ +KSIS TF K++EI E L+
Sbjct: 546 SEKTSYFLIRAALGIARNFHEEDDDDACQKSISVSTTFRPLYKLDQFKDKISEICEDLAQ 605
Query: 375 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLI 433
M K + G T+TL+LK+ F +++TL +YI +SED+ + LL+ + P ++RLI
Sbjct: 606 RMDKRKIGGLTITLELKSTEFNNVNKSMTLNRYIWTSEDMRTYCHQLLEMQWPFPAVRLI 665
Query: 434 GLRVTQF 440
G++++
Sbjct: 666 GVKMSNL 672
>gi|154322288|ref|XP_001560459.1| hypothetical protein BC1G_01291 [Botryotinia fuckeliana B05.10]
Length = 624
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 177/418 (42%), Positives = 253/418 (60%), Gaps = 21/418 (5%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
K+G D VD+ KV +++Y SKGSKYF +EE ++ + KIE + + A+L ++H ++
Sbjct: 28 KSGQDSVDQSKVSEIIYNASKGSKYFNHEEERDKTLTVKIERILGKKAELEKLDLAHDRR 87
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD I ELE TRDL+++ +H+D DAFYAAVE L P LK P +VG ++ T NY AR
Sbjct: 88 RADTAIAELELTRDLTQTIVHIDCDAFYAAVEELDRPELKNVPFSVGK-GVVTTCNYHAR 146
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVR+AM GFIA+KLCP+LI VP +F KYT + R++ YDP F +AS+DEAYL+I
Sbjct: 147 RFGVRSAMAGFIAKKLCPQLIQVPLNFDKYTAKAQEVREILVDYDPRFESASIDEAYLNI 206
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
TE C++ I E+LR V+E+ AK+CS+ NKPNGQ+ + N+R
Sbjct: 207 TEYCQKNDIDPEAAVEQLRREVHEKTK-------------AKICSNYNKPNGQYRVANNR 253
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
+ +M F+ LP RK+ GIG+V E L G+ TC ++ L +F F +
Sbjct: 254 VEIMKFMRDLPTRKVNGIGRVFEREL-GAIGVKTCGDIYNVRHYLPKLFGEKAFIFLMQC 312
Query: 329 GLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T+ A RKS+ +E TF+ D L KL AE L D+Q+ +GRTL
Sbjct: 313 YLGLGRTDVKPAEEYTRKSVGTEGTFNDINDATELRSKLRHTAEELEKDLQRTQFKGRTL 372
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
LK+K ++EV TR K + S++D+ K++ + L+AE+P ++LRL+GLR T
Sbjct: 373 VLKVKLKTYEVLTRQAAPPKAVFSADDLYKYSLPMLEKLEAEMPGLTLRLMGLRCTNL 430
>gi|302681639|ref|XP_003030501.1| hypothetical protein SCHCODRAFT_57666 [Schizophyllum commune H4-8]
gi|300104192|gb|EFI95598.1| hypothetical protein SCHCODRAFT_57666 [Schizophyllum commune H4-8]
Length = 600
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 179/431 (41%), Positives = 262/431 (60%), Gaps = 16/431 (3%)
Query: 26 TNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRA-RCAKLTSPVIS 84
+ KAG+ D+ ++ +++ E SKGSK+++NE++K+ + Q+IE + A R L I
Sbjct: 19 STGKAGL-AKDQTEINRIIAEASKGSKFYDNEKKKDKDLTQRIEKILAVRDEALRGADIG 77
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTAN 144
+ D + ELE+ RDLS+ +HVDMDAF+A VE L P +KGK +G ++ TA+
Sbjct: 78 AIEATVDHILAELESERDLSQYIVHVDMDAFFANVEMLYQPEVKGKAFGMGVLT---TAS 134
Query: 145 YEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA 204
YEAR++GVR+ MP FIA+KLCP+LI V + +Y+ S +F +YDP AS DE
Sbjct: 135 YEARQYGVRSGMPTFIAKKLCPDLILVKINHERYSEKSKQVMDIFRRYDPTMCPASCDEG 194
Query: 205 YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 264
YL+IT+ CRE I E E+R V+EE+ LT SAG+APN++ +INKPNGQF L
Sbjct: 195 YLNITKYCREHDIGPEECVAEMRRVVHEESDLTVSAGIAPNKV------NINKPNGQFYL 248
Query: 265 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 324
P DR ++M+F+ L IRKI G+G+V E +L + GI TC ++ + + + H F
Sbjct: 249 PFDRSSIMSFMRDLSIRKIPGVGRVNERLLESI-GIKTCGDIYTHRATVYLMDKHFGMRF 307
Query: 325 FLSVGLGLGSTNT--PQARFRKSISSER--TFSVTEDKALLYRKLAEIAEMLSADMQKEG 380
L LG+ S P+ + RKSI +ER TF+ +K + KL E+A L DM+ G
Sbjct: 308 LLQTYLGIASNTVRPPERQERKSIGAERRVTFNPISEKDKIMLKLDEVAAELEDDMRTSG 367
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQF 440
GRT+TLK K +++V TRA + ++I+S ED+ LL E P+ LRLIGLRVT+
Sbjct: 368 WAGRTVTLKFKLDTYQVFTRAKSFDRWITSKEDLYAAGKELLAPEWPLILRLIGLRVTKL 427
Query: 441 NEDKVRAPSDP 451
+ + P+ P
Sbjct: 428 KDLRAPEPTMP 438
>gi|452818943|gb|EME26075.1| DNA polymerase kappa subunit [Galdieria sulphuraria]
Length = 537
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 164/409 (40%), Positives = 261/409 (63%), Gaps = 3/409 (0%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG+D V++E+ +V+ ++SKG+++++NEERKE ++++I + L+ +K
Sbjct: 14 KAGLDSVNEEEATRVIVDVSKGTEFYKNEERKEKLLEKRILEVTELAVTLSEQDKKRIEK 73
Query: 89 VADKRILE-LEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEA 147
D++ + E RD SR+ +H+DMDAF+A+VE L PSLK PMAVG+ SM+ TANYEA
Sbjct: 74 FVDEQFISSWEQERDFSRTIVHLDMDAFFASVEELDQPSLKSLPMAVGSTSMLSTANYEA 133
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R++GVR+AMPGFIA KLCP+L+ VP F +Y S+ + K+D S+DEAY+D
Sbjct: 134 RKYGVRSAMPGFIALKLCPQLVIVPPRFKRYCQVSNQIASLLYKFDSR-AHMSMDEAYID 192
Query: 208 ITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 267
ITE + +G ++ ++R +++E G+TCSAGVA N ++AK+ +D+NKPNGQ ++ D
Sbjct: 193 ITEYLKTQGGVVEDVVSKIRQNIFENTGITCSAGVASNTMIAKIATDLNKPNGQTIVQPD 252
Query: 268 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLS 327
+ + F++ L +RKI G+G+VTE +L + I ++++ S+L T +F L
Sbjct: 253 MVCIQNFLNPLSVRKIPGVGRVTEKLLSSL-NIFCIQDIISHRSVLFHCMRRKTFEFLLQ 311
Query: 328 VGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 387
LG+ ++ RK +S ERTF T L + ++++L+ D++ E + +TLT
Sbjct: 312 SALGIAPAFICESESRKGMSRERTFKPTSSLEELRKICESVSKLLADDLEAEDMYAKTLT 371
Query: 388 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 436
LK+K + F VRTRAVT +I E IL++A LL E+P+ +RL+G+R
Sbjct: 372 LKIKCSDFSVRTRAVTKCFFIYRYEQILENAWKLLLKEMPIEIRLLGVR 420
>gi|302507978|ref|XP_003015950.1| hypothetical protein ARB_06262 [Arthroderma benhamiae CBS 112371]
gi|291179518|gb|EFE35305.1| hypothetical protein ARB_06262 [Arthroderma benhamiae CBS 112371]
Length = 605
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 171/414 (41%), Positives = 252/414 (60%), Gaps = 8/414 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD++KV +++Y SKGSK+F +E ++ + +KI+ + A KL +SH +
Sbjct: 42 KAGQDKVDQQKVSEIIYNASKGSKFFNHERARDQLLTEKIQKILAHKEKLEKQDLSHSIR 101
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+AD+ I +LE RDLS+S +H+D DAF+AAVE L P L+ PMAVG ++ T NY AR
Sbjct: 102 LADEYIADLELRRDLSQSIVHIDCDAFFAAVEELDRPELRDVPMAVGK-GVLTTCNYHAR 160
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M F+A+KLCPELI +P ++ KYT + R + YDP F +AS+DEAYL+I
Sbjct: 161 KFGCRSGMASFVAKKLCPELICIPQNYEKYTAKAREIRAILANYDPEFESASVDEAYLNI 220
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ C + ++LR V+ + G+T SAG+A N +AK+ S+ NKPNGQF +P++R
Sbjct: 221 TQYCAANNVDPQAAVQQLRGEVFAQTGVTVSAGIAANAKIAKISSNWNKPNGQFYVPSER 280
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F++ +P+RK+ G+G+V E L GI TC ++ Q +L +F F +
Sbjct: 281 AAIMEFMTKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQYRGMLSQLFGQKAFCFLMQC 339
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T P F RKSI +E TF+ D L KL A L D++ +GRTL
Sbjct: 340 YLGLGRTRIQPAGTFPRKSIGTEHTFADLSDFHELQEKLRWTASALEKDLRAAETKGRTL 399
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLR 436
LK+K +FEV +R K + ++D+ K++ LL K + +RL+GLR
Sbjct: 400 VLKVKLHTFEVLSRQTVAPKPLLVADDLYKYSLPLLTKLHKERPQMKIRLMGLR 453
>gi|302666871|ref|XP_003025031.1| hypothetical protein TRV_00836 [Trichophyton verrucosum HKI 0517]
gi|291189111|gb|EFE44420.1| hypothetical protein TRV_00836 [Trichophyton verrucosum HKI 0517]
Length = 605
Score = 323 bits (827), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 171/414 (41%), Positives = 252/414 (60%), Gaps = 8/414 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD++KV +++Y SKGSK+F +E ++ + +KI+ + A KL +SH +
Sbjct: 42 KAGQDKVDQQKVSEIIYNASKGSKFFNHERARDQLLTEKIQKILAHKEKLEKQDLSHSIR 101
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+AD+ I +LE RDLS+S +H+D DAF+AAVE L P L+ PMAVG ++ T NY AR
Sbjct: 102 LADEYIADLELRRDLSQSIVHIDCDAFFAAVEELDRPELRDVPMAVGK-GVLTTCNYHAR 160
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M F+A+KLCPELI +P ++ KYT + R + YDP F +AS+DEAYL+I
Sbjct: 161 KFGCRSGMASFVAKKLCPELICIPQNYEKYTAKAREIRAILANYDPEFESASVDEAYLNI 220
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ C + ++LR V+ + G+T SAG+A N +AK+ S+ NKPNGQF +P++R
Sbjct: 221 TQYCAANNVDPQAAVQQLRGEVFAQTGVTVSAGIAANAKIAKISSNWNKPNGQFYVPSER 280
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F++ +P+RK+ G+G+V E L GI TC ++ Q +L +F F +
Sbjct: 281 AAIMEFMTKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQYRGMLSQLFGQKAFCFLMQC 339
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T P F RKSI +E TF+ D L KL A L D++ +GRTL
Sbjct: 340 YLGLGRTRIQPAGTFPRKSIGTEHTFADLSDFHELQEKLRWTASALEKDLRAAETKGRTL 399
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLR 436
LK+K +FEV +R K + ++D+ K++ LL K + +RL+GLR
Sbjct: 400 VLKVKLHTFEVLSRQTVAPKPLLVADDLYKYSLPLLTKLHKERPQMKIRLMGLR 453
>gi|406859501|gb|EKD12565.1| impB/mucB/samB family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 613
Score = 322 bits (824), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 178/418 (42%), Positives = 250/418 (59%), Gaps = 13/418 (3%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
K+G D V + ++Y SKGSKYF NEE ++ + QKIE + A+ +L ++ ++
Sbjct: 29 KSGQDNVSE-----IIYNASKGSKYFNNEEARDKNLTQKIERILAKKKQLEKLDLASDRR 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD I ELE +RDLS+ +H+D DAFYAAVE L P LK P +VG ++ T NY AR
Sbjct: 84 KADDYIAELELSRDLSQVVVHIDCDAFYAAVEQLDRPELKDLPFSVGK-GVLTTCNYHAR 142
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M GF+A+KLCP+LI +P +F KYT + R++ YDP F +AS+DEAYL+I
Sbjct: 143 KFGCRSGMAGFVAKKLCPQLIQIPLNFDKYTAKAQEVREIIVDYDPRFESASIDEAYLNI 202
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
TE C++ +S + ++LR V+E+ +T SAG+A N LAK+CS++NKPNGQF LP +R
Sbjct: 203 TEYCQKNDMSPEDAVQQLRREVHEKTKITISAGIAANAKLAKICSNLNKPNGQFQLPIER 262
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F+ LP RK+ GIG+V E L D GI TC ++ L +F F +
Sbjct: 263 SAIMAFMRDLPTRKVNGIGRVFEREL-DAVGIKTCGDIYTYRQYLSKLFGEKAFGFLMQC 321
Query: 329 GLGLGSTNTPQAR--FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T A RKS+ +E TF L +L AE L DM + +GRTL
Sbjct: 322 YLGLGRTRIQPAEDYERKSVGTESTFGEMSKPTELRERLRATAEELEKDMIRTQFKGRTL 381
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
LK+K ++EV TR V K + +ED+ + + L+ E P + LRL+GLR T
Sbjct: 382 CLKVKLHTYEVFTRQVVPPKAVYLAEDLYNYGVPMLSKLEQEFPGLRLRLMGLRCTHL 439
>gi|239615336|gb|EEQ92323.1| DNA-directed polymerase kappa [Ajellomyces dermatitidis ER-3]
Length = 605
Score = 321 bits (823), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 173/418 (41%), Positives = 252/418 (60%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG VD+ KV +++Y +S+GSK+F +E+ + + KIE + ++ K+ + + +
Sbjct: 36 KAGQSAVDQRKVSEIIYNVSRGSKFFTHEKSRNQLLTTKIERIISQKQKIEEHGLLLHTR 95
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ + ELE RDLS++ +H+D DAF+AAVE L P L+ PMAVG ++ T NY AR
Sbjct: 96 RTDQYLAELELGRDLSQTVVHIDCDAFFAAVEELDRPELRELPMAVGK-GVLTTCNYHAR 154
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
++G R+ M GFIA+KLCP+LI +P ++ KYT +D R + YDP F ++SLDEAYL+I
Sbjct: 155 KYGCRSGMAGFIAKKLCPDLILIPQNYQKYTAKADEIRAILACYDPQFQSSSLDEAYLNI 214
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T C I E LR+ V E+ ++ S G+APN LAK+CS+ NKPNGQ +PN+R
Sbjct: 215 TAYCSANEIEPEEAVRRLRSEVVEKTKVSISGGIAPNARLAKICSNWNKPNGQHYVPNER 274
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F+S++P+R I G+G+V E L D GI C ++ L+ +F F +
Sbjct: 275 SAIMKFMSAIPLRNINGVGRVFEREL-DAIGIKYCRDIFTHRGLILPLFGEKCYRFLMQC 333
Query: 329 GLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T + RKS+ +ERTF T + A L KL A L DM + +GRTL
Sbjct: 334 YLGLGRTKIQPIEESERKSVGTERTFRDTGNVADLQEKLQLTALELEKDMLRTQFKGRTL 393
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQF 440
LK+K +FEV +R + L K + SED+ ++A V L E P + +RL+GLR T
Sbjct: 394 VLKVKLHTFEVLSRQMLLPKAVYLSEDLYRYALPMLVKLYKETPNLKIRLMGLRCTNL 451
>gi|327357690|gb|EGE86547.1| DNA-directed polymerase kappa [Ajellomyces dermatitidis ATCC 18188]
Length = 565
Score = 321 bits (822), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 173/418 (41%), Positives = 252/418 (60%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG VD+ KV +++Y +S+GSK+F +E+ + + KIE + ++ K+ + + +
Sbjct: 36 KAGQSAVDQRKVSEIIYNVSRGSKFFTHEKSRNQLLTTKIERIISQKQKIEEHGLLLHTR 95
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ + ELE RDLS++ +H+D DAF+AAVE L P L+ PMAVG ++ T NY AR
Sbjct: 96 RTDQYLAELELGRDLSQTVVHIDCDAFFAAVEELDRPELRELPMAVGK-GVLTTCNYHAR 154
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
++G R+ M GFIA+KLCP+LI +P ++ KYT +D R + YDP F ++SLDEAYL+I
Sbjct: 155 KYGCRSGMAGFIAKKLCPDLILIPQNYQKYTAKADEIRAILACYDPQFQSSSLDEAYLNI 214
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T C I E LR+ V E+ ++ S G+APN LAK+CS+ NKPNGQ +PN+R
Sbjct: 215 TAYCSANEIEPEEAVRRLRSEVVEKTKVSISGGIAPNARLAKICSNWNKPNGQHYVPNER 274
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F+S++P+R I G+G+V E L D GI C ++ L+ +F F +
Sbjct: 275 SAIMKFMSAIPLRNINGVGRVFEREL-DAIGIKYCRDIFTHRGLILPLFGEKCYRFLMQC 333
Query: 329 GLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T + RKS+ +ERTF T + A L KL A L DM + +GRTL
Sbjct: 334 YLGLGRTKIQPIEESERKSVGTERTFRDTGNVADLQEKLQLTALELEKDMLRTQFKGRTL 393
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQF 440
LK+K +FEV +R + L K + SED+ ++A V L E P + +RL+GLR T
Sbjct: 394 VLKVKLHTFEVLSRQMLLPKAVYLSEDLYRYALPMLVKLYKETPNLKIRLMGLRCTNL 451
>gi|320589524|gb|EFX01985.1| DNA-directed polymerase [Grosmannia clavigera kw1407]
Length = 600
Score = 321 bits (822), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 176/412 (42%), Positives = 248/412 (60%), Gaps = 8/412 (1%)
Query: 39 KVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELE 98
+V ++Y SKGSKYF EE ++ + K+ + A+ A L +S + D I EL+
Sbjct: 14 QVSDIIYNASKGSKYFNREETRDRVLSSKVARILAKKAHLERLDLSRDLRAVDGLITELD 73
Query: 99 ATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPG 158
A+RDLS+ +HVD DAFYAAVE L P L G P AVG ++ T NY AR FG R+ M G
Sbjct: 74 ASRDLSQYIVHVDCDAFYAAVELLGQPELAGAPFAVGG-GVLSTCNYLARSFGCRSGMAG 132
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS 218
F+A+KLCP+LI + D KY + R+V +YDP F +AS+DEAYL++TE C G
Sbjct: 133 FVAKKLCPKLIILKPDHAKYVAKAQEVRRVLARYDPRFESASIDEAYLNVTEYCATHGAD 192
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
E+ +LR V EE +T SAG+A N LAK+CS+INKPNGQF+L N+R A++ F +L
Sbjct: 193 PGEVVAQLRREVLEETRVTVSAGIAANTRLAKICSNINKPNGQFLLQNERSAILDFTKTL 252
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT- 337
RK+ GIG+V E L V GI TC ++ + + +F F + LGLG T+
Sbjct: 253 ACRKVNGIGRVFERELASV-GIQTCGDIYDQRQYISRLFGEKACHFLVHSYLGLGRTSVQ 311
Query: 338 PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
P + RKS+ +E TF+ D L ++L A L D+++ +GRTL LKLK +FE
Sbjct: 312 PAEEYERKSVGTESTFTSMSDPGKLRQQLQWTAHELEKDLRRVECKGRTLVLKLKLNTFE 371
Query: 397 VRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLRLIGLRVTQFNEDK 444
V TR V L + + ++D+ K+AS +L + ELP +S+RL+GLR T +
Sbjct: 372 VHTRQVILSRAVYLADDLYKYASPMLSKMEQELPGISVRLLGLRCTNLTSTR 423
>gi|392570399|gb|EIW63572.1| DNA/RNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 638
Score = 321 bits (822), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 182/444 (40%), Positives = 270/444 (60%), Gaps = 18/444 (4%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEH-MRARCAKLTSPVISHYQ 87
KAG+ D+ ++ +++ E SKGSK++E+E+RK+ + ++I H ++ R + ++ +
Sbjct: 29 KAGL-AKDQTEINRIIAEASKGSKFYEHEKRKDKDLTERINHILKLRDEAVKGVDLTKVE 87
Query: 88 KVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEA 147
+ DK I +LEA RDLS+ +HVDMDAF+A+VE L +PSL K AVG ++ TA+YEA
Sbjct: 88 QGVDKLIAQLEAKRDLSQFIVHVDMDAFFASVEVLHDPSLASKAFAVGG-GVVSTASYEA 146
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FGVR+ M F+A+KLCPELI + + + Y S+ +F +YDP AA DE YL+
Sbjct: 147 RKFGVRSGMATFVAKKLCPELIVLKSHYEWYNEMSNKVMSIFRRYDPTMCAAGCDEGYLN 206
Query: 208 ITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 267
IT C E +S E ++R+ V EE LT SAG+APN+ NKPNGQF L D
Sbjct: 207 ITNYCEEHSLSPEECVSQMRSVVQEETMLTVSAGIAPNK---------NKPNGQFKLDFD 257
Query: 268 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLS 327
AV F+ L IRK+ G+G+V E +L D G+ TC ++ + ++L + H +F L
Sbjct: 258 PDAVKKFMYDLSIRKVPGVGRVHERLL-DSIGVKTCGDVYEHRAVLFLLDKHFGLEFLLQ 316
Query: 328 VGLGLGS--TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 385
LG+ S Q RKSI +ERTF+ D A +Y KL E+A L ADM++ G G+T
Sbjct: 317 AYLGIASNVVQPGQREERKSIGAERTFNALSDTAKIYAKLEEVAAELEADMEESGWTGKT 376
Query: 386 LTLKLKTASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 444
+TLK K +F+V TRA + ++IS+ ED+ LLK ELP++LRLIGLRVT+ +
Sbjct: 377 ITLKYKLDTFQVFTRAKSFDRWISTKKEDLFAIGQELLKPELPLTLRLIGLRVTKLKD-- 434
Query: 445 VRAPSDPTQKTLTNFMTSGHASKK 468
++A + + + F + +S K
Sbjct: 435 LKAEVESKARGIKRFFEAAPSSPK 458
>gi|315041825|ref|XP_003170289.1| DNA polymerase kappa [Arthroderma gypseum CBS 118893]
gi|311345323|gb|EFR04526.1| DNA polymerase kappa [Arthroderma gypseum CBS 118893]
Length = 604
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 174/445 (39%), Positives = 261/445 (58%), Gaps = 17/445 (3%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD++KV +++Y SKGSK+F +E ++ + +KI+ + A + +SH +
Sbjct: 42 KAGQDKVDQQKVSEIIYNASKGSKFFNHERARDQVLTEKIQKILAHKEIIEKQDLSHSTR 101
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+AD+ I +LE RDLS+S +H+D DAF+AAVE L P L+ PMAVG ++ T NY AR
Sbjct: 102 LADEYIADLELRRDLSQSIVHIDCDAFFAAVEELDRPELRDVPMAVGK-GVLTTCNYHAR 160
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M F+A+KLCPELI +P ++ KYT + R + YDP F +AS+DEAYL+I
Sbjct: 161 KFGCRSGMASFVAKKLCPELICIPQNYEKYTAKAREIRAILANYDPEFESASVDEAYLNI 220
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ C + + ++LR V+ + G+T SAG+A N +AK+ S+ NKPNGQF +P++R
Sbjct: 221 TQYCAANNVDPQDAVQQLRDEVFAQTGVTVSAGIAANAKIAKITSNWNKPNGQFHVPSER 280
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F++ +P+RK+ G+G+V E L GI TC ++ Q +L +F F +
Sbjct: 281 AAIMDFMTKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQFRGMLSQLFGQKAFCFLMQC 339
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T P F RKS+ +E TF+ D L KL A L D++ +GRTL
Sbjct: 340 YLGLGRTQIQPAGTFPRKSVGTEHTFADLGDFHQLQEKLKWTASALEKDLRAAETKGRTL 399
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVTQFNE 442
LK+K +FE+ +R K + ++D+ K++ LL K + +RL+GLR T
Sbjct: 400 VLKVKLHTFELLSRQTVAPKPLLLADDLYKYSLPLLTKLYKERPQMKIRLMGLRCTSLVS 459
Query: 443 DKVRAPSDPTQKTLTNFMTSGHASK 467
T+K NF G A +
Sbjct: 460 ---------TKKGTFNFFNRGDAGQ 475
>gi|268576074|ref|XP_002643017.1| C. briggsae CBR-POLK-1 protein [Caenorhabditis briggsae]
Length = 612
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 193/478 (40%), Positives = 275/478 (57%), Gaps = 59/478 (12%)
Query: 24 VYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVI 83
+ + KAGM G+DKEK+ KV+ E + S Y E +++++ I++K+ ++ R + T
Sbjct: 3 TFNDNKAGMSGLDKEKITKVIEENTSAS-YSEFSKKQQSRIEEKVLEIKNRLSTATKEER 61
Query: 84 SHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA 143
+ + +LE+ RDLSR + +DMDA++AAVE +P L+ PMAVG+ +M+ T+
Sbjct: 62 QGAEHLMKNVETKLESQRDLSRDCVCIDMDAYFAAVEMRDDPKLRTIPMAVGSAAMLSTS 121
Query: 144 NYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDE 203
NY ARRFGVRA MPGFI++KLCP L VP ++TKY+ S ++F +YD + SLDE
Sbjct: 122 NYLARRFGVRAGMPGFISKKLCPNLTLVPGNYTKYSKISRQFSEIFAEYDGDVGMMSLDE 181
Query: 204 A----------------------------------------YLDITEV----CR------ 213
A YLD E C
Sbjct: 182 AYIDLTDYVAARTEKRTLKRHRYGGDCPCWLPRVPDSESPEYLDSEESECPKCSKTRKIY 241
Query: 214 ----ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRM 269
E GI EI E+R V ++ GLTCSAG+A N +LAK+CSD NKPNGQ+VL NDR
Sbjct: 242 YDDVEFGIGREEIVREIRFRVEQKTGLTCSAGIAANFMLAKICSDFNKPNGQYVLENDRE 301
Query: 270 AVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVG 329
++ F+ LPIRK+GGIG+V+E L+ + I T +MLQK SL FS T + FL
Sbjct: 302 KILEFLRDLPIRKVGGIGRVSEAHLQSM-DIRTVGDMLQKASLFPLCFSQLTQESFLRTA 360
Query: 330 LGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR-GRTLTL 388
LGL + RKSIS ERTFS T D +L + +EI ML D++K G+ G+T+TL
Sbjct: 361 LGLPGRPSSSDPRRKSISVERTFSPTADFKILLLEHSEICRMLEEDIRKSGVTGGKTITL 420
Query: 389 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDK 444
KLK +SF+V TR++T + +++ EDI K + LL+ E +RL+G+R++Q F E+K
Sbjct: 421 KLKLSSFDVLTRSLTPSEAVTTLEDIQKFSLELLEKERGKEIRLLGVRLSQLVFEEEK 478
>gi|261188840|ref|XP_002620833.1| DNA-directed polymerase kappa [Ajellomyces dermatitidis SLH14081]
gi|239591975|gb|EEQ74556.1| DNA-directed polymerase kappa [Ajellomyces dermatitidis SLH14081]
Length = 605
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 173/418 (41%), Positives = 252/418 (60%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG VD+ KV +++Y +S+GSK+F +E+ + + KIE + ++ K+ + + +
Sbjct: 36 KAGQSAVDQRKVSEIIYNVSRGSKFFTHEKSRNQLLTTKIELIISQKQKIEEHGLLLHTR 95
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ + ELE RDLS++ +H+D DAF+AAVE L P L+ PMAVG ++ T NY AR
Sbjct: 96 RTDQYLAELELGRDLSQTVVHIDCDAFFAAVEELDRPELRELPMAVGK-GVLTTCNYHAR 154
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
++G R+ M GFIA+KLCP+LI +P ++ KYT +D R + YDP F ++SLDEAYL+I
Sbjct: 155 KYGCRSGMAGFIAKKLCPDLILIPQNYQKYTAKADEIRAILACYDPQFQSSSLDEAYLNI 214
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T C I E LR+ V E+ ++ S G+APN LAK+CS+ NKPNGQ +PN+R
Sbjct: 215 TAYCSANEIEPEEAVRRLRSEVVEKTKVSISGGIAPNARLAKICSNWNKPNGQHYVPNER 274
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F+S++P+R I G+G+V E L D GI C ++ L+ +F F +
Sbjct: 275 SAIMKFMSAIPLRNINGVGRVFEREL-DAIGIKYCRDIFTHRGLILPLFGEKCYRFLMQC 333
Query: 329 GLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T + RKS+ +ERTF T + A L KL A L DM + +GRTL
Sbjct: 334 YLGLGRTKIQPIEESERKSVGTERTFRDTGNVADLQEKLQLTALELEKDMLRTQFKGRTL 393
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHA---SVLLKAELP-VSLRLIGLRVTQF 440
LK+K +FEV +R + L K + SED+ ++A V L E P + +RL+GLR T
Sbjct: 394 VLKVKLHTFEVLSRQMLLPKAVYLSEDLYRYALPMLVKLYKETPNLKIRLMGLRCTNL 451
>gi|336260609|ref|XP_003345098.1| hypothetical protein SMAC_07389 [Sordaria macrospora k-hell]
gi|380096554|emb|CCC06602.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 636
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 171/414 (41%), Positives = 258/414 (62%), Gaps = 8/414 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y +S+GSK+F EE ++ + KI+ + ++ +L + H +
Sbjct: 53 KAGQDSVDQSKVSEIIYSVSRGSKFFNREEARDKSLTAKIDQILSKKRQLEKLDLGHELR 112
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
VAD +LE +RDLS+ +H+D D+FYA+VE L P LK P AVG ++ T NY AR
Sbjct: 113 VADNLEKQLELSRDLSQHIVHIDCDSFYASVELLDYPELKDLPFAVGG-GVLTTCNYIAR 171
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
++G R+ M GF+A+KLCP+LI +P +F KYT + R++ +YDPNF +AS+DEAYL+I
Sbjct: 172 KYGCRSGMAGFVAKKLCPDLILLPINFDKYTAKAGEVREIIAEYDPNFESASIDEAYLNI 231
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ C ++ + ++R+ ++E+ G+ SAG+A N LAK+CS++NKPNGQ+VLP++R
Sbjct: 232 TDYCTRHTMTAADAVSKMRSEIHEKTGIPVSAGIAANTRLAKICSNMNKPNGQYVLPSER 291
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F+ LP RK+ GIG+V E L V GI+T ++ L +F +F +
Sbjct: 292 AAIMEFMRDLPSRKVNGIGRVFERELAAV-GIHTLGDIHPNRQYLRQLFGEKAFEFLIHC 350
Query: 329 GLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T A RKS+ +E TF D L KL AE L D+++ +GRTL
Sbjct: 351 YLGLGRTCVKPAETYERKSVGTEGTFRDMSDPTELRSKLCRTAEDLEQDLRRAECKGRTL 410
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLR 436
LK+K +FEV TR V L + + + D+ +A + L+ E+P + LRL+GLR
Sbjct: 411 CLKVKLHTFEVLTRQVVLPRAVYLAADLYNYALPMLTKLEQEIPGMKLRLMGLR 464
>gi|405119670|gb|AFR94442.1| DNA-directed polymerase kappa [Cryptococcus neoformans var. grubii
H99]
Length = 632
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 181/446 (40%), Positives = 265/446 (59%), Gaps = 8/446 (1%)
Query: 1 MERSDGECASSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERK 60
ME S E ++ R ++ + KAG+ D+ ++ +++ E SKGSK++ N+ RK
Sbjct: 16 MEMSIEERVAAEAKQRSFERSLAGPSVGKAGIT-RDQTEINRIIAEASKGSKFYNNQVRK 74
Query: 61 EAFIQQKIEHMRARCAKLT--SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAA 118
+ + +KI R + +L +P + AD+ ++E+EATRDLS++ +HVDMDAFYA+
Sbjct: 75 DQELTEKIAWYRNKRDELMRMAPR-DQLEAEADRILMEVEATRDLSQTIIHVDMDAFYAS 133
Query: 119 VETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKY 178
VE +PSLKGK VG ++CTA+YEAR+FGVR+AM GFIA+KLCP +I F Y
Sbjct: 134 VEVQRDPSLKGKAFGVGK-GVLCTASYEARKFGVRSAMAGFIAKKLCPHIILTDLHFDLY 192
Query: 179 TYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTC 238
T S +++ +YD N M ASLDE YL+IT ++ E+ ++R V E+ LT
Sbjct: 193 TKASKAVKEILVQYDENLMMASLDEGYLNITPYMSTHNMTAAEVVTQIRAQVEEKTSLTI 252
Query: 239 SAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVF 298
SAG+A NR+LAK+CSD NKPNGQF L DR ++ F+ LP+RKI G G+VTE L +
Sbjct: 253 SAGIAANRMLAKICSDKNKPNGQFELAFDRATIVRFLRDLPVRKIPGFGRVTERCL-EGL 311
Query: 299 GINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARF--RKSISSERTFSVTE 356
GI TC ++ +K L + LG+ R RKS+ ERTF
Sbjct: 312 GIQTCGDIYEKRMDLLLMDHWFGFRGLCRAYLGIADNTVAPGRREERKSVGVERTFRDKM 371
Query: 357 DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILK 416
D + L +I E L D+ + G+T+T+K K ++E +TRA ++ KYISS+ DIL
Sbjct: 372 DDEEIMATLIDIVEELGKDLDRLQYAGKTITIKYKLHTYENKTRAKSIPKYISSARDILP 431
Query: 417 HASVLLKAELPVSLRLIGLRVTQFNE 442
A LLK ELP+ +RL+G+R++ +
Sbjct: 432 IAQELLKKELPLRIRLLGVRLSTLKD 457
>gi|299751501|ref|XP_002911648.1| DNA polymerase IV [Coprinopsis cinerea okayama7#130]
gi|197244665|dbj|BAG68959.1| DNA polymerase kappa [Coprinopsis cinerea]
gi|298409403|gb|EFI28154.1| DNA polymerase IV [Coprinopsis cinerea okayama7#130]
Length = 707
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 174/410 (42%), Positives = 262/410 (63%), Gaps = 14/410 (3%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEH-MRARCAKLTSPVISHYQ 87
KAG+ D+ ++ +++ E SKGSK++ENE+RK+ + +KI ++ + + ++ +
Sbjct: 28 KAGL-AHDQTEINRIILEASKGSKFYENEKRKDKELTEKINRILQEKEEAMLGADMAKLE 86
Query: 88 KVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEA 147
+AD++I++LE+ RDLS+ +HVDMDAFYA VE L +PSLKGKP AVG ++ TA+YEA
Sbjct: 87 AMADQQIMKLESERDLSQFIVHVDMDAFYANVEILRDPSLKGKPFAVG-RGVMSTASYEA 145
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R++GVR+ M GFI +KLCP+LIFVP F Y+ S +F +YDP A +DEAYL+
Sbjct: 146 RKYGVRSGMAGFIGKKLCPQLIFVPAHFDLYSKTSAQIMSIFRRYDPTMCPAGVDEAYLN 205
Query: 208 ITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 267
+T C++ G + E+ E+R +V++E LT SAG+APN++LAK+CSD NKPNGQF L +
Sbjct: 206 VTAYCKQHGKTVDEVVSEMRKAVFDETQLTVSAGIAPNKMLAKICSDKNKPNGQFKLEFE 265
Query: 268 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLS 327
++ F+ SL IRK+ G+G+V E +L D GI TC ++ Q+ ++ + DF L
Sbjct: 266 PDSIKAFMHSLSIRKVPGVGRVNERLL-DSIGIRTCGDIYQQRGVIALMDKRFGLDFLLR 324
Query: 328 VGLGLGSTN-TPQAR-FRKSISSERTFSVTEDK--------ALLYRKLAEIAEMLSADMQ 377
V LG+ S + P AR RKSI +ERTFS + + KL E+AE L DM+
Sbjct: 325 VYLGIASNHVAPHAREERKSIGAERTFSTLDSNHADPKKGSVAIVAKLEEVAEELVEDMK 384
Query: 378 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP 427
+EG G+T+TLK K +++ TRA K+I++ E++ LL + P
Sbjct: 385 REGWVGKTVTLKYKLDTYQTFTRAKQFSKWITTKEELFNTGKELLLSRFP 434
>gi|358375860|dbj|GAA92435.1| DNA-directed polymerase kappa [Aspergillus kawachii IFO 4308]
Length = 602
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 184/451 (40%), Positives = 272/451 (60%), Gaps = 16/451 (3%)
Query: 2 ERSDGECASSSENPRPWQSYHTVYTN------AKAGMDGVDKEKVQKVVYEMSKGSKYFE 55
E +DG A +S + +SY T+ KAG D VD+ KV +++Y SKGSKYF
Sbjct: 7 EPNDG--AKASNSVESAESYDTLKYQLLGPSLTKAGQDAVDQRKVSEIIYNASKGSKYFN 64
Query: 56 NEERKEAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAF 115
+E+ ++ + KIE + A+L +S + AD+ + ELE TRDLS+ +HVD DAF
Sbjct: 65 HEQNRDKVLTVKIERILKEKARLEKLDLSADLRRADQLLAELELTRDLSQHVVHVDCDAF 124
Query: 116 YAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDF 175
+AAVE L P LK PMAVG ++ T NYEAR+FG R+ M F+A+KLCP+LI +P ++
Sbjct: 125 FAAVEELDRPELKTVPMAVGK-GVLTTCNYEARKFGCRSGMASFVAKKLCPQLICLPQNY 183
Query: 176 TKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAG 235
KYT + R +F +YDP F +AS+DEAYL++T C E + E + +R V E+
Sbjct: 184 EKYTEKAKEIRAIFAQYDPTFESASIDEAYLNLTAYCTENELDPEEAVQRMRAEVLEKTK 243
Query: 236 LTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR 295
++ SAG+A N +AK+ S+ NKPNGQF +PN+R A+M F+ LP+RK+ G+G+V E L
Sbjct: 244 ISVSAGIAANAKIAKIASNKNKPNGQFCVPNEREAIMRFMEELPVRKVNGVGRVFEREL- 302
Query: 296 DVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFS 353
D GI TC ++ + ++L +F F + LGLG T P + RKS+ +ERTF
Sbjct: 303 DAIGIKTCGDIYPQRAILTKLFGEKAFHFLMQCYLGLGRTKIQPVENYERKSVGTERTFH 362
Query: 354 VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSED 413
+K KL IAE L D+ + +GRTL LK+K A+FEV +R + +S+++D
Sbjct: 363 EIGNKEEFRAKLWSIAEELEKDLARTEFKGRTLVLKVKLATFEVLSRQCQPPRAVSTAKD 422
Query: 414 ILKHASVL---LKAELP-VSLRLIGLRVTQF 440
+ + + L+ E+P + +RL+GLR T
Sbjct: 423 LYAFSLPMLEKLEKEMPDLKMRLLGLRCTNL 453
>gi|167522010|ref|XP_001745343.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776301|gb|EDQ89921.1| predicted protein [Monosiga brevicollis MX1]
Length = 456
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 180/446 (40%), Positives = 260/446 (58%), Gaps = 50/446 (11%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGMD V+K K +V+ MS+GS++++NE RK A Q+++ M++R A L++ + +
Sbjct: 13 KAGMDSVNKNKTDEVIRSMSEGSRFYDNERRKAAQTAQRVQVMKSRAAVLSTGALQQAEA 72
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+A +LE RDLSR +H D DAFYAAVE P L+GKP+ +G + M+ TA+YEAR
Sbjct: 73 MASAFERQLETERDLSRVIVHCDADAFYAAVELRDQPHLRGKPIGIGGIGMLSTASYEAR 132
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FGVR+AMPG+IA +LCPELI V F Y S + V +YDPNF + SLDEAYLDI
Sbjct: 133 KFGVRSAMPGYIALRLCPELILVKPRFHAYEAASRQLQAVMAQYDPNFRSVSLDEAYLDI 192
Query: 209 TEVCRE----------------------------------------RGISGIE------- 221
T+ R ++ +E
Sbjct: 193 TDYMARLTPGDVAQLPPLTTVADPPLVQEANSADSKPGMATDSAGARNLTTLEGRALAAR 252
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+ ++RT ++E LT SAG+A NR+LAK+ SD NKP+GQF LP DR A++ F++++P R
Sbjct: 253 VVHQMRTRMHETTQLTVSAGIACNRMLAKIGSDQNKPDGQFCLPADRAAILAFLANMPTR 312
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
KI GIGKVTE ILR+ I C+ +LQ+ +LL +F+ + DFF+ LG+ S NT +
Sbjct: 313 KIPGIGKVTEQILRE-LDITNCQALLQQRALLKLLFTPISFDFFMRSALGIASNNTRKRS 371
Query: 342 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRA 401
RKSI E TF L K + + DM+++ L GR++ LKLKT F+V+ R+
Sbjct: 372 ERKSIGHETTFRELNQVPDLEDKCLHLCHKTALDMERKALLGRSVCLKLKTVDFKVKQRS 431
Query: 402 VTLQKYISSSEDILKHASV-LLKAEL 426
V L + ++ E ++K A++ LL EL
Sbjct: 432 VLLPAH-TADEPVIKRAALGLLHREL 456
>gi|145246060|ref|XP_001395279.1| DNA-directed polymerase kappa [Aspergillus niger CBS 513.88]
gi|134079991|emb|CAK48475.1| unnamed protein product [Aspergillus niger]
Length = 604
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 180/444 (40%), Positives = 267/444 (60%), Gaps = 14/444 (3%)
Query: 9 ASSSENPRPWQSYHTVYTN------AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEA 62
A +S N + Y T+ KAG D VD+ KV +++Y SKGSK+F +E+ ++
Sbjct: 12 AKASSNAESVEDYETLKYQLLGPSLTKAGQDAVDQRKVSEIIYNASKGSKFFNHEQNRDK 71
Query: 63 FIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETL 122
+ KIE + A+L +S + AD+ + ELE TRDLS+ +HVD DAF+AAVE L
Sbjct: 72 VLTVKIERILKEKARLEKLDLSADLRRADQLLAELELTRDLSQHVVHVDCDAFFAAVEEL 131
Query: 123 SNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYS 182
P LK PMAVG ++ T NYEAR+FG R+ M F+A+KLCP+LI +P ++ KYT +
Sbjct: 132 DRPELKTVPMAVGK-GVLTTCNYEARKFGCRSGMASFVAKKLCPQLICLPQNYEKYTAKA 190
Query: 183 DLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGV 242
R +F +YDP F +AS+DEAYL++T C E + E + +R V E+ ++ SAG+
Sbjct: 191 KEIRAIFAQYDPTFESASIDEAYLNLTAYCTENELDPEEAVQRMRAEVLEKTKISVSAGI 250
Query: 243 APNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT 302
A N +AK+ S+ NKPNGQF +PN+R A+M F+ LP+RK+ G+G+V E L D GI T
Sbjct: 251 AANAKIAKIASNKNKPNGQFCVPNEREAIMKFMEELPVRKVNGVGRVFEREL-DAIGIKT 309
Query: 303 CEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKAL 360
C ++ + ++L +F F + LGLG T P + RKS+ +ERTF +K
Sbjct: 310 CGDIYPQRAILTKLFGEKAFHFLVQCYLGLGRTKIQPVENYERKSVGTERTFHEIGNKEE 369
Query: 361 LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV 420
KL IAE L D+ + +GRTL LK+K A+FEV +R + +S+++D+ +
Sbjct: 370 FRAKLWSIAEELEKDLARTEFKGRTLVLKVKLATFEVLSRQCQPPRAVSTAKDLYAFSLP 429
Query: 421 L---LKAELP-VSLRLIGLRVTQF 440
+ L+ E+P + +RL+GLR T
Sbjct: 430 MLEKLEKEMPDLKMRLLGLRCTNL 453
>gi|350637497|gb|EHA25854.1| hypothetical protein ASPNIDRAFT_189582 [Aspergillus niger ATCC
1015]
Length = 604
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 179/444 (40%), Positives = 267/444 (60%), Gaps = 14/444 (3%)
Query: 9 ASSSENPRPWQSYHTVYTN------AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEA 62
A +S N + Y T+ KAG D VD+ KV +++Y SKGSK+F +E+ ++
Sbjct: 12 AKASSNAESVEDYETLKYQLLGPSLTKAGQDAVDQRKVSEIIYNASKGSKFFNHEQNRDK 71
Query: 63 FIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETL 122
+ KIE + A+L +S + AD+ + ELE TRDLS+ +HVD DAF+AAVE L
Sbjct: 72 VLTVKIERILKEKARLEKLDLSADLRRADQLLAELELTRDLSQHVVHVDCDAFFAAVEEL 131
Query: 123 SNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYS 182
P LK PMAVG ++ T NYEAR+FG R+ M F+A+KLCP+LI +P ++ KYT +
Sbjct: 132 DRPELKTVPMAVGK-GVLTTCNYEARKFGCRSGMASFVAKKLCPQLICLPQNYEKYTAKA 190
Query: 183 DLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGV 242
R +F +YDP F +AS+DEAYL++T C E + E + +R V E+ ++ SAG+
Sbjct: 191 KEIRAIFAQYDPTFESASIDEAYLNLTAYCTENELDPEEAVQRMRAEVLEKTKISVSAGI 250
Query: 243 APNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT 302
A N +AK+ S+ NKPNGQF +PN+R A+M F+ LP+RK+ G+G+V E L D GI +
Sbjct: 251 AANAKIAKIASNKNKPNGQFCVPNEREAIMKFMEELPVRKVNGVGRVFEREL-DAIGIKS 309
Query: 303 CEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKAL 360
C ++ + ++L +F F + LGLG T P + RKS+ +ERTF +K
Sbjct: 310 CGDIYPQRAILTKLFGEKAFHFLVQCYLGLGRTKIQPVENYERKSVGTERTFHEIGNKEE 369
Query: 361 LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV 420
KL IAE L D+ + +GRTL LK+K A+FEV +R + +S+++D+ +
Sbjct: 370 FRAKLWSIAEELEKDLARTEFKGRTLVLKVKLATFEVLSRQCQPPRAVSTAKDLYAFSLP 429
Query: 421 L---LKAELP-VSLRLIGLRVTQF 440
+ L+ E+P + +RL+GLR T
Sbjct: 430 MLEKLEKEMPDLKMRLLGLRCTNL 453
>gi|324505143|gb|ADY42216.1| DNA polymerase kappa [Ascaris suum]
Length = 641
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 197/505 (39%), Positives = 282/505 (55%), Gaps = 74/505 (14%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVIS 84
+ + KAGM G+DKE++QK++ E + S + E +++ I +IEH R T I+
Sbjct: 4 FNDNKAGMVGLDKERIQKIIEENTSPS-FDEYAKKRSERITSRIEHNRKLLTTFTPQQIA 62
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTAN 144
Q D+ + LE RDLSR LH+DMDAFYAAVE +PSL+ PMAVG+ SM+ T+N
Sbjct: 63 KAQCEMDELVESLEEGRDLSRIALHIDMDAFYAAVEMRDDPSLRTVPMAVGSDSMLSTSN 122
Query: 145 YEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA 204
Y ARR+GVRAAMPGFI RKLCPEL VP DF KY S RKVF +YD NF SLDEA
Sbjct: 123 YIARRYGVRAAMPGFIGRKLCPELKIVPCDFHKYRAASHEVRKVFEEYDSNFQMGSLDEA 182
Query: 205 YLDITE--------------------VCRERGIS-------------------------- 218
YLDI+E +CR ++
Sbjct: 183 YLDISEYALTRLEPVERARIRYTGDCICRLPLLTEDEKEEMKNAKVSEELCGKCGKMRIS 242
Query: 219 -------GIEIAE---ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
G +I E ELR V + GLTCSAG+APN ++AK+CSDINKPNGQF + N +
Sbjct: 243 VCDMVCFGTDIEEIVRELRFRVEQATGLTCSAGIAPNSMIAKICSDINKPNGQFRIANSK 302
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
AV+ F+ LPIRK+ GIG VTE IL+ + + C ++ +K +++ +F+ + + FL +
Sbjct: 303 EAVLKFMRDLPIRKVSGIGAVTEAILKGI-EVEKCGDLYEKRAIISLLFTRCSYEHFLRI 361
Query: 329 GLGLGSTNTP-----QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR- 382
LG+ ++ T + RKSIS ERTF T D +LL + L + K +R
Sbjct: 362 ALGISTSYTSFVTSEKESRRKSISVERTFHPTGDISLLIEITESLCNELIESLSKRLIRG 421
Query: 383 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL---PVSLRLIGLRVTQ 439
G + T+K+K ++F+V TR V++ I ++ +++ EL LRL+G+R+++
Sbjct: 422 GYSATVKMKFSTFDVITRCVSVDYVICDISHLMPLCERIIRNELREGNKQLRLLGVRLSR 481
Query: 440 --FNEDKVRAPSDPTQKTLTNFMTS 462
F +DKV + K+LT+F ++
Sbjct: 482 LLFIDDKVE-----SMKSLTSFWSN 501
>gi|303309978|ref|XP_003065002.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240104661|gb|EER22857.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 609
Score = 313 bits (803), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 181/446 (40%), Positives = 268/446 (60%), Gaps = 14/446 (3%)
Query: 7 ECASSSENPRPWQS-----YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERK 60
E A + PR +S YH + + KAG D VD++KV +++YE SKGSK+F +E+ +
Sbjct: 5 ENADAPLQPRSNESDETLKYHLLGPSLTKAGQDKVDQQKVSEIIYEASKGSKFFNHEKLR 64
Query: 61 EAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVE 120
+ + +KI + A+ KL ++ + + AD+ I ELE +RDLS++ +H+D DAF+AAVE
Sbjct: 65 DQALTEKISRILAQKEKLEKQDLTAHTRRADEYIAELELSRDLSQTVVHLDCDAFFAAVE 124
Query: 121 TLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTY 180
L P L+ PMAVG ++ T NY AR++G R+ M F+A+KLCP+LI +P ++ KYT
Sbjct: 125 ELDRPELRSVPMAVGK-GVLTTCNYVARKYGCRSGMASFVAKKLCPQLICLPQNYAKYTA 183
Query: 181 YSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSA 240
+ R + YDP F +AS+DEAYL+ITE C + E ++LR + E +T SA
Sbjct: 184 KAKEIRAILANYDPQFESASIDEAYLNITEYCLTNNMEPQEAVQKLRNEIAVETKITVSA 243
Query: 241 GVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI 300
G+A N +AK+ S+ NKPNGQF +P+DR A+M F++ +P+RK+ G+G+V E L V GI
Sbjct: 244 GIAANAKIAKIASNWNKPNGQFYVPSDRAAIMEFMAKIPVRKVNGVGRVFERELEAV-GI 302
Query: 301 NTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSVTEDK 358
C ++ +L +F F + LGLG TN A R RKS+ +ERTF E
Sbjct: 303 KMCSDIYSLRGMLATLFGQKAFQFLMQCYLGLGRTNIAPAEERQRKSVGTERTFRDLEGF 362
Query: 359 ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA 418
A L KL A L D++ +GRTL LK+K +FE+ +R V K + ++D+ K+A
Sbjct: 363 ASLQDKLKSTAIELERDLRVAEFKGRTLVLKIKLHTFEIISRQVVTPKPVYLADDLYKYA 422
Query: 419 SVLL---KAELP-VSLRLIGLRVTQF 440
LL E P + +RL+GLR T
Sbjct: 423 LPLLTKINKETPNLKIRLMGLRCTNL 448
>gi|391341271|ref|XP_003744954.1| PREDICTED: DNA polymerase kappa-like [Metaseiulus occidentalis]
Length = 601
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 181/475 (38%), Positives = 284/475 (59%), Gaps = 27/475 (5%)
Query: 24 VYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVI 83
++ KAG+DGVDK++V K++ E S+G+ ++EN++RK A Q++I+ + + ++
Sbjct: 1 MFNPHKAGLDGVDKDRVNKIIEESSRGTPFWENQQRKNARHQERIKKLLEKIETASNHEW 60
Query: 84 SHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA 143
S Q AD + +LE ++ + +H+DMDAF+A+VE +P+L+ +PMAVG SMI T+
Sbjct: 61 SEAQTKADDYLEQLEL--NVQQVVVHIDMDAFFASVEERDDPTLRERPMAVGDHSMISTS 118
Query: 144 NYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDE 203
NY ARRFGVRA +PGFIA KLCP+L+ V D KY+ S +V +YDPN + LDE
Sbjct: 119 NYVARRFGVRAGLPGFIALKLCPQLVLVRPDMGKYSEASAKVMQVLSRYDPNLVQFGLDE 178
Query: 204 AYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFV 263
A LDITE+CR + +I E+R V + GLTCSAG+ PN+++AK+ +D+NKPNGQF
Sbjct: 179 AALDITELCRNPEKTPDQIVAEIRQDVRDTTGLTCSAGIGPNQMVAKMLADVNKPNGQFR 238
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 323
L + +FI +L +RKI G+G+V E +L + +N C +++ + + L FS +TA
Sbjct: 239 LTTP-AEIESFIENLTVRKIFGVGQVQEKMLAALGCVN-CSDLIDQRAKLFLGFSDATAK 296
Query: 324 FFLSVGLGL--GSTNTPQ--ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 379
FL+ G+ G N + +R R+S S+E TF +++ L ++E LS D+
Sbjct: 297 SFLAAAKGICDGLVNDSEISSRTRRSKSAETTFKDSDNVEFLTEVCHHLSERLSEDLAIS 356
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP----VSLRLIGL 435
L+G+ +T+K KT+SF+V +R+V L+ S + I A+ +LK+ L LRL+G+
Sbjct: 357 DLQGKLITVKFKTSSFDVFSRSVALELPTRSLKTISTQATRVLKSMLARNPGTKLRLLGV 416
Query: 436 RVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKE 490
R++ F E +D Q TL+ S A + + +CLI+ E
Sbjct: 417 RMSSFQE------ADGKQATLSQLFKSTAAPPR---------DEPKTECLIEKSE 456
>gi|320033815|gb|EFW15761.1| DNA-directed polymerase kappa [Coccidioides posadasii str.
Silveira]
Length = 609
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 174/418 (41%), Positives = 257/418 (61%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD++KV +++YE SKGSK+F +E+ ++ + +KI + A+ KL ++ + +
Sbjct: 33 KAGQDKVDQQKVSEIIYEASKGSKFFNHEKLRDQALTEKISRILAQKEKLEKQDLTAHTR 92
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD+ I ELE +RDLS++ +H+D DAF+AAVE L P L+ PMAVG ++ T NY AR
Sbjct: 93 RADEYIAELELSRDLSQTVVHLDCDAFFAAVEELDRPELRSVPMAVGK-GVLTTCNYVAR 151
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
++G R+ M F+A+KLCP+LI +P ++ KYT + R + YDP F +AS+DEAYL+I
Sbjct: 152 KYGCRSGMASFVAKKLCPQLICLPQNYAKYTAKAKEIRAILANYDPQFESASIDEAYLNI 211
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
TE C + E ++LR + E +T SAG+A N +AK+ S+ NKPNGQF +P+DR
Sbjct: 212 TEYCLTNNMEPQEAVQKLRNEIAVETKITVSAGIAANAKIAKIASNWNKPNGQFYVPSDR 271
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F++ +P+RK+ G+G+V E L V GI C ++ +L +F F +
Sbjct: 272 AAIMEFMAKIPVRKVNGVGRVFERELEAV-GIKMCSDIYSLRGMLATLFGQKAFQFLMQC 330
Query: 329 GLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG TN A R RKS+ +ERTF E A L KL A L D++ +GRTL
Sbjct: 331 YLGLGRTNIAPAEERQRKSVGTERTFRDLEGFASLQDKLKSTAIELERDLRVAEFKGRTL 390
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL---KAELP-VSLRLIGLRVTQF 440
LK+K +FE+ +R V K + ++D+ K+A LL E P + +RL+GLR T
Sbjct: 391 VLKIKLHTFEIISRQVVTPKPVYLADDLYKYALPLLTKINKETPNLKIRLMGLRCTNL 448
>gi|440799683|gb|ELR20727.1| DNA polymerase kappa, putative [Acanthamoeba castellanii str. Neff]
Length = 463
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/394 (42%), Positives = 246/394 (62%), Gaps = 26/394 (6%)
Query: 17 PWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCA 76
P + + T KAGM VDKEK K++Y+MSKGSK+F+NE+ K ++++++ M +
Sbjct: 78 PLAARLGLSTGDKAGMQSVDKEKANKIIYDMSKGSKFFKNEQMKSERVEKEVQQMLHKLK 137
Query: 77 KLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT 136
++ + K D ++ LE++RDLS+ + H+DMDAFYA+VE NP L+G P+AVG
Sbjct: 138 EVEHQDDTLLLKSIDAKLATLESSRDLSQIFFHIDMDAFYASVEIRDNPHLRGLPIAVGG 197
Query: 137 MSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNF 196
SM+ TA+YEAR+FGVR+AMPGFIA++LCPELI VP F KY S LT++VF +DP+F
Sbjct: 198 NSMLTTASYEARKFGVRSAMPGFIAKQLCPELIIVPVHFDKYREASKLTQEVFAMFDPHF 257
Query: 197 MAASLDEAYLDITE-VCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
A SLDEA L ++ + + S ++AE LAK+C D+
Sbjct: 258 RAYSLDEASLHLSPYLAKHPDESAEQVAER----------------------LAKICCDV 295
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 315
NKP+GQF L DR A++ F+ LP+RKI G+GKVTE +L+ + GI C E+ +K ++L
Sbjct: 296 NKPDGQFRLQADREAIIAFLKDLPVRKISGVGKVTEQMLKGL-GITKCCEIQEKRAILFR 354
Query: 316 VFSHSTADFFLSVGLGLGSTNTPQ--ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLS 373
+F S+A+FFL LG+ S + + + RKS+S RTF + +A L + E+AE L+
Sbjct: 355 LFKPSSAEFFLRASLGIWSPTSGEDSSPARKSVSKMRTFRPSGSQAFLMSQAREVAESLA 414
Query: 374 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKY 407
M K+ L G+ L + LKT F++ TR+ L ++
Sbjct: 415 KSMAKKSLAGKNLAIYLKTDEFKMFTRSTMLNRF 448
>gi|392577344|gb|EIW70473.1| hypothetical protein TREMEDRAFT_68079 [Tremella mesenterica DSM
1558]
Length = 571
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 186/481 (38%), Positives = 276/481 (57%), Gaps = 24/481 (4%)
Query: 28 AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRA-RCAKLTSPVISHY 86
KAG+ D+ ++ +++ E SK S ++ N+ RK+A + +KI+ +A R L +
Sbjct: 27 GKAGLTR-DQTEINRIIAEASKVSSFYNNQVRKDAELTRKIQWFQAKRDELLRTADKKRL 85
Query: 87 QKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYE 146
+ ADK ++E+EATRDL+++ +HVDMDAFYA+ E +P+LKGK YE
Sbjct: 86 EAEADKIMVEVEATRDLTQTIVHVDMDAFYASCEVKRDPTLKGKAFG-----------YE 134
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
AR+FG+R+ M GFIA+KLCPE+I P +F Y S R+V +YD N M ASLDE YL
Sbjct: 135 ARKFGIRSGMAGFIAKKLCPEIILTPLNFDLYIEASKSVREVLLEYDENLMMASLDEGYL 194
Query: 207 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 266
+IT E +S E+ +LR V + GLT SAG+A NR+LAK+CSD NKPNGQF LP
Sbjct: 195 NITSYMAEHCMSATEVVTQLRGQVEAKTGLTISAGIASNRMLAKICSDQNKPNGQFELPF 254
Query: 267 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 326
DR +++ F+ LP+RKI G G+VTE L + G+ TC ++ K + L A+
Sbjct: 255 DRSSIVRFMRDLPVRKIPGFGRVTERCL-EGLGVETCGDIYTKRADLLAMDHWFGFQGLC 313
Query: 327 SVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 384
LG+ + RKS+ ERTF D + L EIAE L D+++ G+
Sbjct: 314 KAHLGIADNKVEPGKREERKSVGCERTFRDKTDNEDIMNTLTEIAEELGKDLERLEYSGK 373
Query: 385 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 444
+T+K K ++ +TRA T+ KYIS+S++IL A LL+ ELP+ +RL+G+R++ +
Sbjct: 374 CVTVKYKLHTYVNKTRAQTVGKYISTSKEILPIAQELLRKELPLRIRLLGIRLSTLKDLT 433
Query: 445 VRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYE 504
+ K + NF TS SK+ ++ +G ND+ I+ +V E N +
Sbjct: 434 I------PDKGIRNFFTS--PSKRKRSQEDEIGIIENDEPEIESGLEGSDGEVEELNEED 485
Query: 505 F 505
F
Sbjct: 486 F 486
>gi|425773335|gb|EKV11693.1| DNA-directed polymerase kappa, putative [Penicillium digitatum Pd1]
Length = 621
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 174/438 (39%), Positives = 257/438 (58%), Gaps = 17/438 (3%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y SKGSK+F +E+ ++ + KIE + A+L +S +
Sbjct: 42 KAGQDSVDQLKVSEIIYNASKGSKFFNHEQDRDRNLTLKIERILKEKARLERLDLSSDLR 101
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD+ + ELE +RDLS+ +HVD DAF+AAVE L P LK PMAVG ++ T NY AR
Sbjct: 102 CADEYLTELELSRDLSQYVIHVDCDAFFAAVEELGRPELKTVPMAVGR-GVLTTCNYVAR 160
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FGVR+ M F+A+KLCP+L+ +P ++ KYT + R + +YDP F +AS+DEAYL+I
Sbjct: 161 KFGVRSGMASFVAKKLCPQLVLLPPNYDKYTTKAKEIRAIIAEYDPLFESASIDEAYLNI 220
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T C E E+ + LR + E ++ SAG+ N +AK+ S++NKPNGQF +PN+R
Sbjct: 221 TAYCDENHREPDEVVQRLRAEILETTEVSVSAGIGANAKIAKIASNLNKPNGQFQVPNER 280
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F+ LP+RK+ GIG+ E L+ + GI C ++ + L +F F
Sbjct: 281 EAIMDFMCDLPVRKVNGIGRAFERELKSI-GIEKCGDIFHHRAFLTKLFGEKAFQFLAQC 339
Query: 329 GLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T + + RKS+S+E TF DK L KL A+ L+ D+ + +GRTL
Sbjct: 340 YLGLGRTKIEPVETQVRKSVSTETTFHDIGDKEELRAKLWWAAQELAKDLARTQFKGRTL 399
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNE 442
LK+K +FEV TR + +S ++D+ A + L+ ++P + LRL+GLR +
Sbjct: 400 ALKVKLHTFEVLTRQTAPSRAVSLAKDLYSFALPMLAKLEKDIPNLKLRLLGLRCSNLVS 459
Query: 443 DKVRAPSDPTQKTLTNFM 460
TQK NF
Sbjct: 460 ---------TQKVGINFF 468
>gi|425778909|gb|EKV17010.1| DNA-directed polymerase kappa, putative [Penicillium digitatum
PHI26]
Length = 621
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 174/438 (39%), Positives = 257/438 (58%), Gaps = 17/438 (3%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ KV +++Y SKGSK+F +E+ ++ + KIE + A+L +S +
Sbjct: 42 KAGQDSVDQLKVSEIIYNASKGSKFFNHEQDRDRNLTLKIERILKEKARLERLDLSSDLR 101
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD+ + ELE +RDLS+ +HVD DAF+AAVE L P LK PMAVG ++ T NY AR
Sbjct: 102 CADEYLTELELSRDLSQYVIHVDCDAFFAAVEELGRPELKTVPMAVGR-GVLTTCNYVAR 160
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FGVR+ M F+A+KLCP+L+ +P ++ KYT + R + +YDP F +AS+DEAYL+I
Sbjct: 161 KFGVRSGMASFVAKKLCPQLVLLPPNYDKYTTKAKEIRAIIAEYDPLFESASIDEAYLNI 220
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T C E E+ + LR + E ++ SAG+ N +AK+ S++NKPNGQF +PN+R
Sbjct: 221 TAYCDENHREPDEVVQRLRAEILETTEVSVSAGIGANAKIAKIASNLNKPNGQFQVPNER 280
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F+ LP+RK+ GIG+ E L+ + GI C ++ + L +F F
Sbjct: 281 EAIMDFMCDLPVRKVNGIGRAFERELKSI-GIEKCGDIFHHRAFLTKLFGEKAFQFLAQC 339
Query: 329 GLGLGSTNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T + + RKS+S+E TF DK L KL A+ L+ D+ + +GRTL
Sbjct: 340 YLGLGRTKIEPVETQVRKSVSTETTFHDIGDKEELRAKLWWAAQELAKDLARTQFKGRTL 399
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQFNE 442
LK+K +FEV TR + +S ++D+ A + L+ ++P + LRL+GLR +
Sbjct: 400 ALKVKLHTFEVLTRQTAPSRAVSLAKDLYSFALPMLAKLEKDIPNLKLRLLGLRCSNLVS 459
Query: 443 DKVRAPSDPTQKTLTNFM 460
TQK NF
Sbjct: 460 ---------TQKVGINFF 468
>gi|119178590|ref|XP_001240956.1| hypothetical protein CIMG_08119 [Coccidioides immitis RS]
gi|392867079|gb|EAS29729.2| DNA-directed polymerase kappa [Coccidioides immitis RS]
Length = 609
Score = 311 bits (798), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 180/446 (40%), Positives = 267/446 (59%), Gaps = 14/446 (3%)
Query: 7 ECASSSENPRPWQS-----YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERK 60
E A + PR +S YH + + KAG D VD++KV +++YE SKGSK+F +E +
Sbjct: 5 ENADAPLQPRSNESDETLKYHLLGPSLTKAGQDKVDQQKVSEIIYEASKGSKFFNHERLR 64
Query: 61 EAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVE 120
+ + +KI + A+ KL ++ + + AD+ I ELE +RDLS++ +H+D DAF+AAVE
Sbjct: 65 DQALTEKISRILAQKEKLEKQDLTAHTRRADEYIAELELSRDLSQTVVHLDCDAFFAAVE 124
Query: 121 TLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTY 180
L P L+ PMAVG ++ T NY AR++G R+ M F+A+KLCP+LI +P ++ KYT
Sbjct: 125 ELDRPELRSVPMAVGK-GVLTTCNYVARKYGCRSGMASFVAKKLCPQLICLPQNYAKYTA 183
Query: 181 YSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSA 240
+ R + YDP F +AS+DEAYL+ITE C + E ++LR + E +T SA
Sbjct: 184 KAKEIRAILANYDPQFESASIDEAYLNITEYCLTNNMEPQEAVQKLRNEIAVETKITVSA 243
Query: 241 GVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI 300
G+A N +AK+ S+ NKPNGQF +P+DR A+M F++ +P+RK+ G+G+V E L V GI
Sbjct: 244 GIAANAKIAKIASNWNKPNGQFYVPSDRAAIMEFMAKIPVRKVNGVGRVFERELEAV-GI 302
Query: 301 NTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSVTEDK 358
C ++ +L +F F + LGLG T+ A R RKS+ +ERTF E
Sbjct: 303 KMCSDIYSLRGMLATLFGQKAFQFLMQCYLGLGRTDIAPAEERQRKSVGTERTFRDLEGF 362
Query: 359 ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHA 418
A L KL A L D++ +GRTL LK+K +FE+ +R V K + ++D+ K+A
Sbjct: 363 ASLQDKLKSTAIELERDLRVAEFKGRTLVLKIKLHTFEIISRQVVTPKPVYLADDLYKYA 422
Query: 419 SVLL---KAELP-VSLRLIGLRVTQF 440
LL E P + +RL+GLR T
Sbjct: 423 LPLLTKINKETPNLKIRLMGLRCTNL 448
>gi|296818533|ref|XP_002849603.1| DNA polymerase kappa [Arthroderma otae CBS 113480]
gi|238840056|gb|EEQ29718.1| DNA polymerase kappa [Arthroderma otae CBS 113480]
Length = 612
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 168/425 (39%), Positives = 251/425 (59%), Gaps = 8/425 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+++V +++Y SKGSK+F +E ++ + +KI+ + A KL +S+ +
Sbjct: 45 KAGQDKVDQQRVSEIIYNASKGSKFFNHERVRDQLLTEKIQKILAHKQKLEKQDLSYSTR 104
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD+ I +LE RDLS+ +H+D DAF+AAVE L P L+ PMAVG ++ T NY AR
Sbjct: 105 QADEYIADLELRRDLSQWIVHIDCDAFFAAVEELDRPELRDVPMAVGK-GVLTTCNYHAR 163
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M F+A+KLCP+LI +P ++ KY + R + YDP+F +AS+DEAYL+I
Sbjct: 164 KFGCRSGMASFVAKKLCPQLICIPQNYDKYNAKAREIRAILANYDPDFESASVDEAYLNI 223
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ C + ++LR + + +T SAG+A N +AK+ S+ NKPNGQF +P++R
Sbjct: 224 TQYCATNNVDPQAAVQQLRDEIAAQTRVTVSAGIAANAKIAKISSNWNKPNGQFHVPSER 283
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F++ +P+RK+ G+G+V E L GI TC ++ Q +L +F H F +
Sbjct: 284 AAIMEFMAKIPVRKVNGVGRVFEREL-GAIGITTCGDIYQFRGMLTQLFGHKAFCFLMQC 342
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T P F RKSI +E TF+ D L KL A L D++ +GRTL
Sbjct: 343 YLGLGRTRIQPAGTFPRKSIGTEHTFADLGDLHQLQEKLKWTASELEKDLRSAETKGRTL 402
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVTQFNE 442
LK+K +FEV +R K + + D+ K++ LL K + +RL+GLR T
Sbjct: 403 VLKVKLHTFEVLSRQTVAPKPLMLAGDLYKYSLPLLAKLYKERPQMKIRLMGLRCTNLVS 462
Query: 443 DKVRA 447
K A
Sbjct: 463 TKREA 467
>gi|258577383|ref|XP_002542873.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903139|gb|EEP77540.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 601
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 176/427 (41%), Positives = 261/427 (61%), Gaps = 9/427 (2%)
Query: 21 YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLT 79
YH + + KAG D VD++KV +V+YE SKGSK+F +E+ ++ + +KI+ + AR KL
Sbjct: 24 YHLLGPSLTKAGQDTVDQQKVSEVIYEASKGSKFFNHEKVRDQALTEKIQRLSARKEKLE 83
Query: 80 SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
+S + AD+ I ELE TRDLS+ +H+D DAF+AAVE L P L+ PMAVG +
Sbjct: 84 KQDLSVQARRADEYIAELELTRDLSQVVVHIDCDAFFAAVEELDRPELRTVPMAVG-RGV 142
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T NY AR++G R+ M F+A+KLCPELI +P ++ KYT ++ R + YD F +A
Sbjct: 143 LTTCNYVARKYGCRSGMASFVAKKLCPELICLPQNYAKYTAKANEIRAILVNYDSRFESA 202
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
S+DEAYL+ITE C + E ++LR ++ E +T SAG+A N +AK+ S+ NKPN
Sbjct: 203 SIDEAYLNITEYCSTNNMGPEEAVQKLRDTIAAETNITVSAGIAANAKIAKIASNWNKPN 262
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 319
GQF +P++R A+M F++ +P+RK+ G+G+V E L D GI TC ++ ++L +F
Sbjct: 263 GQFYVPSERAAIMDFMAKIPVRKVNGVGRVFEREL-DALGIKTCRDIYPLRAMLAPLFGQ 321
Query: 320 STADFFLSVGLGLGSTNTPQA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 377
F + LGLG T A R RKS+ +E TF E A L KL A L D++
Sbjct: 322 KAFQFLMQCYLGLGRTTISPAEERQRKSVGTESTFRDLEGLANLQDKLKSTAVELEKDLR 381
Query: 378 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP-VSLRLI 433
K +GRTL LK+K +FE+ +R K + ++++ ++A LL E P + +RL+
Sbjct: 382 KADCKGRTLVLKVKLHTFEIISRQAVTPKPVHLADELYRNALPLLTKIYKETPNLKIRLM 441
Query: 434 GLRVTQF 440
GLR T
Sbjct: 442 GLRCTHL 448
>gi|169785539|ref|XP_001827230.1| DNA-directed polymerase kappa [Aspergillus oryzae RIB40]
gi|83775978|dbj|BAE66097.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391866150|gb|EIT75422.1| putative DNA damage inducible protein [Aspergillus oryzae 3.042]
Length = 604
Score = 308 bits (789), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 175/418 (41%), Positives = 256/418 (61%), Gaps = 8/418 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD++KV +++Y SKGSK+F +E+ ++ + +KIE + A+L + +SH +
Sbjct: 37 KAGQDAVDQQKVSEIIYNASKGSKFFNHEQNRDRILTEKIERILKEKARLENLDLSHDLR 96
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD+ + ELE +RDLS+ +HVD DAF+AAVE L P LK P AVG ++ T NYEAR
Sbjct: 97 RADQLLDELELSRDLSQYIVHVDCDAFFAAVEELDRPELKTVPFAVGK-GVLTTCNYEAR 155
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M F+A KLCP+LI +P + KY+ + R +F +YDP F +AS+DEAYL+I
Sbjct: 156 KFGCRSGMASFVAMKLCPQLICLPINHQKYSAKAQEIRAIFAQYDPLFESASIDEAYLNI 215
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T C E I + +R V E+ ++ SAG+A N +AK+ S+ NKPNGQF +PNDR
Sbjct: 216 TAYCTENQIDPEDAVNRMRAEVLEQTKISVSAGIAANAKIAKIASNRNKPNGQFRVPNDR 275
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A++ F+ LP+RK+ G+G+V E L D GI TC ++ + +LL +F F
Sbjct: 276 DAILEFMKDLPVRKVNGVGRVFEREL-DAVGIKTCGDIYSQRALLAKLFGEKAFHFLAQC 334
Query: 329 GLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LGLG T P + RKS+ +E TF+ K L KL IA+ L D+ + +GRTL
Sbjct: 335 YLGLGRTKIQPVENYERKSVGTESTFNEMGGKEALREKLWAIAQELEKDLTRTEFKGRTL 394
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
LK+K A+FEV +R K + ++D+ + + L+ E+P + LRL+GLR T
Sbjct: 395 VLKVKLATFEVLSRQCQPPKAVFLAKDLYTFSLPMLEKLEKEIPNMRLRLLGLRCTNL 452
>gi|426197178|gb|EKV47105.1| hypothetical protein AGABI2DRAFT_69121 [Agaricus bisporus var.
bisporus H97]
Length = 425
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 163/403 (40%), Positives = 242/403 (60%), Gaps = 24/403 (5%)
Query: 26 TNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEH-MRARCAKLTSPVIS 84
++ KAG+ D+ ++ +++ E+SKGSK++ENE+R++ + ++I + R + IS
Sbjct: 28 SSGKAGLAN-DQSEINRIIAEVSKGSKFYENEKRRDKELTERINKILNIRDEVVKGVDIS 86
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM----- 139
+ D+ + E E+ RDL++ +HVDMDAFYA+VE L+NP LKGKP +S+
Sbjct: 87 KIEANVDRLLAEFESQRDLTQIIVHVDMDAFYASVELLNNPELKGKPFGAIRLSVWSVEQ 146
Query: 140 -----ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDP 194
+ TA+YEAR++GVR+ M GF+A+KLCP+LI +P FT Y SD +F +YDP
Sbjct: 147 VGRGVLSTASYEARKYGVRSGMAGFVAKKLCPDLILIPEHFTTYMETSDQVMSIFKRYDP 206
Query: 195 NFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSD 254
N + A DE YL+IT C E +S + +E+R V+EE LT SAG+APN+
Sbjct: 207 NMLIAGCDEGYLNITLHCEEHSVSAADCVQEMRRIVFEETKLTVSAGIAPNK-------- 258
Query: 255 INKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 314
NKPNGQF L DR ++ F+ L +RK+ GIG+V E +L + GI TC ++ + +
Sbjct: 259 -NKPNGQFQLIPDRKTILAFMRELSVRKVFGIGRVNERLLESI-GIKTCGDIFTHRATIA 316
Query: 315 AVFSHSTADFFLSVGLGLGSTNT--PQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 372
+ + L LG+ S PQ RKSI SERTFS +D +L +KL IA L
Sbjct: 317 LMDKQFGLHYLLKTYLGISSNEVRPPQREERKSIGSERTFSPLDDGEVLLQKLEHIASEL 376
Query: 373 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 415
DM + G G+T+TLK K +++V TRA +L +Y+SS ED+
Sbjct: 377 ETDMARNGWAGKTITLKYKLDTYQVFTRAKSLDRYVSSKEDLF 419
>gi|301118068|ref|XP_002906762.1| DNA polymerase kappa, putative [Phytophthora infestans T30-4]
gi|262108111|gb|EEY66163.1| DNA polymerase kappa, putative [Phytophthora infestans T30-4]
Length = 601
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 167/370 (45%), Positives = 216/370 (58%), Gaps = 31/370 (8%)
Query: 24 VYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVI 83
V+T KAGM GVDK+ VQ+VV++MSK S +F+ R A ++Q++ MR + A LT I
Sbjct: 3 VFTADKAGMKGVDKQHVQEVVHKMSKDSSFFQKSLRDNAKVEQRVAAMREKLACLTGSQI 62
Query: 84 SHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA 143
Q+ AD R+ +LEATRDLSR+ + VDMD FYAAVE +P L+ P+AVG + MI T
Sbjct: 63 QRLQQEADARVAQLEATRDLSRTIVVVDMDMFYAAVEMRDDPKLRDVPLAVGGLGMISTT 122
Query: 144 NYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDE 203
NY AR+FGVRAAMPGFI ++LCP+L FVP + KY + R VF +YDP+F A SLDE
Sbjct: 123 NYAARQFGVRAAMPGFIGKELCPDLHFVPVNMKKYAGVAAEIRAVFAEYDPDFEAFSLDE 182
Query: 204 AYLDITEVCRE-----------------------------RGISGIEIAEELRTSVYEEA 234
A LD+T+ E R + ELR V++
Sbjct: 183 ACLDLTDYIAENWQKYISDAMDEIESKESDKEEWASTASGRAAIAAVVVRELRKKVFDCT 242
Query: 235 GLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHIL 294
LT SAG+A N +LAK+CSD+NKPNGQ+VLP R VMTFI LP+RKIGGIGKV E L
Sbjct: 243 QLTASAGIAVNSMLAKICSDMNKPNGQYVLPFSRERVMTFIRELPVRKIGGIGKVMEKTL 302
Query: 295 RDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV 354
+ + T ++ + + +FS TA + L LG+ Q RKS S ERTF
Sbjct: 303 NEALDVQTGGDLFDQRGKIAHLFSGKTAMWLLQTSLGVQERREKQE--RKSFSRERTFKR 360
Query: 355 TEDKALLYRK 364
D L K
Sbjct: 361 LSDPKQLEEK 370
>gi|336371762|gb|EGO00102.1| hypothetical protein SERLA73DRAFT_53034 [Serpula lacrymans var.
lacrymans S7.3]
Length = 446
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 164/396 (41%), Positives = 240/396 (60%), Gaps = 18/396 (4%)
Query: 26 TNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEH-MRARCAKLTSPVIS 84
+ KAG+ D+ ++ +++ E SKGSK+++NE+RK+ + ++I ++ R IS
Sbjct: 25 STTKAGL-AKDQSEINRIIAEASKGSKFYDNEKRKDKELTERINKILKQRDDARQGVDIS 83
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTAN 144
+K D + +LE+ RDLS+ +HVDMDAFYA VE L NP LKGKP VG ++ TA+
Sbjct: 84 QIEKSTDHTLDQLESHRDLSQVIVHVDMDAFYANVELLHNPELKGKPFGVGA-GVLSTAS 142
Query: 145 YEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA 204
Y+AR++GVR+ MPGFIA+KLCPELI V +FT+Y SD +F +YDPN +AA DE
Sbjct: 143 YDARKYGVRSGMPGFIAKKLCPELILVNINFTRYQEMSDKVMDIFRRYDPNMLAAGCDEG 202
Query: 205 YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 264
YL+IT C E + +E+R V++E LT SAG+APN+ NKPNGQF L
Sbjct: 203 YLNITAYCEEHNLDPQACVQEMRAFVHKETNLTVSAGIAPNK---------NKPNGQFYL 253
Query: 265 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 324
P DR ++ +F+ LPIR+I G+G+V E +L D GI TC ++ + L + F
Sbjct: 254 PFDRESIKSFMQDLPIRRIPGVGRVNERLL-DAIGIKTCGDIYTHRATLSLMDKQFGLQF 312
Query: 325 FLSVGLGLGSTNT-PQARFRKSISSE----RTFSVTEDKALLYRKLAEIAEMLSADMQKE 379
L + LG+ S P R + I+S RTFS D+ + KL E+A L D ++
Sbjct: 313 LLRIHLGIASNVVEPGKREERKIASAKVHFRTFSTLSDRQQILNKLEEVAAELEDDTERN 372
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 415
G G+T+TLK K +++V TRA + ++IS+ +D L
Sbjct: 373 GWTGKTVTLKYKLNTYQVYTRAKSFDRWISTKKDDL 408
>gi|340505987|gb|EGR32239.1| hypothetical protein IMG5_090780 [Ichthyophthirius multifiliis]
Length = 490
Score = 305 bits (782), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 152/380 (40%), Positives = 240/380 (63%), Gaps = 9/380 (2%)
Query: 24 VYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVI 83
++ KAGMD +D+EK++ ++ E ++GS +++ +++K+ +QKI+ M +++
Sbjct: 34 LFVGNKAGMDNIDQEKIKYIINETTQGSDFYKKQKQKKQEYEQKIQEMLQTISQIKQNT- 92
Query: 84 SHYQKVAD---KRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI 140
YQ++ + K+I++LE R L R W++ DMD FY A E P L P+AVG MSMI
Sbjct: 93 QKYQQIQNDLQKQIIQLEKQRKLDRIWVNFDMDMFYVACELKEKPELYNSPVAVGGMSMI 152
Query: 141 CTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAAS 200
CTANY AR++GVR+AMPGFIA+KLCP+LI +P D KY YS + + + +YDPN
Sbjct: 153 CTANYIARKYGVRSAMPGFIAKKLCPQLILIPCDQEKYQKYSKIFKNILIQYDPNMEGMG 212
Query: 201 LDEAYLDITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 256
LDEA LD+T+ + I E + ++R + +E GLTCS G+A N++LAK+CSD N
Sbjct: 213 LDEANLDLTDYLKNNNIEKDEDIYDLCYQIRQKINKETGLTCSCGIAANKMLAKICSDQN 272
Query: 257 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 316
KPNGQF L N+ + FI +L IRKI GIG VTE IL+ + GI C+++L+K + +
Sbjct: 273 KPNGQFQLKNNAQEIKDFIGNLQIRKIPGIGNVTEQILKGI-GIEKCQDLLKKTADVKIS 331
Query: 317 FSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 376
FS +T ++ + LG+G + + ++SIS RTF+ + + + K+ +A+ L+ D+
Sbjct: 332 FSENTYEYLIFSALGIGRNEHTEEKEKQSISVSRTFTRIQGEEEIKEKICLLAQYLAEDV 391
Query: 377 QKEGLRGRTLTLKLKTASFE 396
E + G+ +++ +K A FE
Sbjct: 392 LYENVWGKNISVTVKNAKFE 411
>gi|353234314|emb|CCA66340.1| related to DNA polymerase kappa [Piriformospora indica DSM 11827]
Length = 664
Score = 305 bits (781), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 184/423 (43%), Positives = 261/423 (61%), Gaps = 9/423 (2%)
Query: 26 TNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHM-RARCAKLTSPVIS 84
++ KAG+ +D+ ++ K + E SKGSKY+ENE RK+ + KI + + R + I
Sbjct: 39 SSMKAGL-ALDQLEINKRIAEASKGSKYYENERRKDEELASKINALLKQRDELMAMADIP 97
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS-MICTA 143
+ VADK I ELEATRDLS+ +H+DMD+FYA+VE L NPSL GK VG++ ++ TA
Sbjct: 98 RLEAVADKVIAELEATRDLSQYIVHIDMDSFYASVEMLDNPSLVGKAFGVGSLGGVLSTA 157
Query: 144 NYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDE 203
+YEAR+ GVR+ M G IA+KL P+LIFV F++Y+ S + +YD +DE
Sbjct: 158 SYEARKLGVRSGMAGHIAKKLAPDLIFVTNHFSRYSEVSGQVMTILRRYDETMNPVGVDE 217
Query: 204 AYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPN--RLLAKVCSDINKPNGQ 261
AYL+IT+ C I+ E E +R ++++E LT SAG+APN ++LAK+CS+ NKPNG
Sbjct: 218 AYLNITDYCEANKITPEECTENIRKAIFQETKLTASAGIAPNKRKMLAKICSERNKPNGL 277
Query: 262 FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST 321
F L D A+ F+ LPIR+I G+G+VTE +L V GI TCE++ + + L + H
Sbjct: 278 FKLEFDAQAIRDFMKGLPIRRIPGVGRVTERLLESV-GIKTCEDIYTQRATLVLMDKHFH 336
Query: 322 ADFFLSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 379
L + LGLGS P R RKS+ SERTF D A + KL ++A+ L DM++
Sbjct: 337 MHDKLEIYLGLGSNVVRPWPREARKSVGSERTFHAISDPARINEKLEQVAKELEEDMERL 396
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ 439
G G T+TLKLK +FE RA ++ + I ++L LL ELP+ LRL+GLRVT
Sbjct: 397 GYSGHTVTLKLKLDTFE-GNRAKSVHRPIRKYNELLSVGQELLAHELPLKLRLLGLRVTN 455
Query: 440 FNE 442
+
Sbjct: 456 LKD 458
>gi|341895662|gb|EGT51597.1| CBN-POLK-1 protein [Caenorhabditis brenneri]
Length = 589
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 192/512 (37%), Positives = 281/512 (54%), Gaps = 74/512 (14%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVIS 84
+ + KAGM G+DKEK+ KV+ E + S Y +++++ I +K+ ++ R K T
Sbjct: 4 FNDNKAGMGGLDKEKITKVIEENTSAS-YSSFSKKQQSRIDEKVAEIKNRIEKATREEKQ 62
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTAN 144
+ ++LEA+RDLSR + +DMDA++AAVE +P L+ PMAVG+ +M+ T+N
Sbjct: 63 KAENSMKNLEIKLEASRDLSRDCVCIDMDAYFAAVEMRDDPKLRTIPMAVGSSAMLSTSN 122
Query: 145 YEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYT------------------------Y 180
Y ARRFGVRA MPGFI++KLCPEL VP ++ KYT
Sbjct: 123 YLARRFGVRAGMPGFISKKLCPELTLVPGNYPKYTKVSRQFSEIFMEYDGDVGMMSLDEA 182
Query: 181 YSDLT--------RKVFCKYD-----PNFMAASLDE---------------------AYL 206
Y DLT +++F ++ P ++ ++ AY
Sbjct: 183 YIDLTEYVANRTEKRIFTRHRYGGDCPCWLPRVPEDEDIENLQFEDSECTKCSKNRRAYF 242
Query: 207 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 266
D E G+ E+ E+R V + GLTCSAG+A N +LAK+CSD NKPNGQFVL N
Sbjct: 243 DDVEF----GVGREEVVREMRFRVEQLTGLTCSAGIAANFMLAKICSDFNKPNGQFVLEN 298
Query: 267 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 326
DR ++ F+ LPIRK+GGIG+V+E L+ + I T +ML + +L FS + FL
Sbjct: 299 DRNVILEFLEKLPIRKVGGIGRVSEAHLQSM-DIRTVGDMLLQKALFPLCFSPLAQESFL 357
Query: 327 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG-LRGRT 385
LGL + RKSIS ERTFS T D +L EI +ML D++K G + G+T
Sbjct: 358 RTALGLPGRPSSSDPRRKSISVERTFSPTSDFQMLCDVHLEICQMLEEDIRKAGVIGGKT 417
Query: 386 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNED 443
+TLKLK +SF+V TR++T +SS EDI K++ LL+ E +RL+G+R++Q F E+
Sbjct: 418 ITLKLKLSSFDVLTRSLTPSDTVSSLEDIQKYSLELLEKEKGKEIRLLGVRLSQLVFEEE 477
Query: 444 KVRAPSDPTQKTLTNFMTSGHASKKIVGDQNS 475
K KT+T+F K + +++
Sbjct: 478 K-------KSKTITDFWNDAKQQKPLSSPEDA 502
>gi|307110508|gb|EFN58744.1| hypothetical protein CHLNCDRAFT_140443 [Chlorella variabilis]
Length = 864
Score = 305 bits (780), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 156/294 (53%), Positives = 193/294 (65%), Gaps = 11/294 (3%)
Query: 20 SYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLT 79
+Y TV+TNAKAGM+GVD EK GS ++ENE+RKE + I MRA A L
Sbjct: 16 AYETVFTNAKAGMEGVDVEK----------GSAHYENEQRKERAHEDHIARMRAAAAALG 65
Query: 80 SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
++ D ++ LEA RDLSR+WLHVDMDAF+AAVE L P L+G+ AVG M M
Sbjct: 66 PTDLARCTAAMDAQLAALEAGRDLSRTWLHVDMDAFFAAVEELERPELRGRAFAVGGMGM 125
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
I TA+Y ARRFGVR+AMPGFIA KLCP+L+FV DF KYT S R + YDP
Sbjct: 126 ISTASYAARRFGVRSAMPGFIALKLCPDLVFVAPDFAKYTAASQRVRAILRDYDPGLQPG 185
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
SLDEA LD T+ C RG+ G ++A E+R V ++ GLTCS G+APNR+LAK+CSD NKPN
Sbjct: 186 SLDEAALDATDCCAARGLGGGQVAAEIRRRVQQDTGLTCSVGIAPNRMLAKICSDRNKPN 245
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLL 313
GQF L R AVM F+ L IRK+ G+GKVT+ L F + TC ++L LL
Sbjct: 246 GQFELEPRREAVMDFMRDLSIRKVPGVGKVTQKYL-AAFEVQTCGDLLTHKGLL 298
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPS 449
++RTRA TL ++IS+++D+ A LL AELP LRL+GLRV+ F + RAP
Sbjct: 298 LQLRTRAQTLPRHISAADDLFAAARRLLLAELPCELRLLGLRVSGFLQAPRRAPG 352
>gi|58261176|ref|XP_567998.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230080|gb|AAW46481.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 658
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 179/445 (40%), Positives = 259/445 (58%), Gaps = 15/445 (3%)
Query: 2 ERSDGECASSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKE 61
E S E A++ R ++ + KAG+ D+ ++ +++ E SKGSK++ N+ RK+
Sbjct: 116 EMSSEERAAADAKQRSFERSLAGPSVGKAGITR-DQTEINRIIAEASKGSKFYNNQVRKD 174
Query: 62 AFIQQKIEHMRARCAKLT--SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAV 119
+ +KI R + +L +P + AD+ ++E+EATRDLS++ +HVDMDAFYA+V
Sbjct: 175 QELTEKIAWYRNKRDELMRMAPR-DQLEDEADRILMEVEATRDLSQTIIHVDMDAFYASV 233
Query: 120 ETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYT 179
E +PSLKGK VG ++CTA+YEAR+FGVR+AM GFIA+KLCP +I F YT
Sbjct: 234 EVQRDPSLKGKAFGVGK-GVLCTASYEARKFGVRSAMAGFIAKKLCPHIILTDLHFDLYT 292
Query: 180 YYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCS 239
S ++V +YD N M ASLDE YL+IT ++ E+ E+R V E+ LT S
Sbjct: 293 KASKAVKEVLVQYDENLMMASLDEGYLNITPYMSTHNMTASEVVTEIRAQVEEKTSLTIS 352
Query: 240 AGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFG 299
AG+A NR+LAK+CSD NKPNG F L DR ++ F+ LP+R I G G+VTE L + G
Sbjct: 353 AGIAANRMLAKICSDKNKPNGHFELAFDRATIVRFMRDLPVRNIPGFGRVTERCL-EGLG 411
Query: 300 INTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARF--RKSISSERTFSVTED 357
I TC ++ +K L + LG+ R R+S+ ERTF D
Sbjct: 412 IQTCGDIYEKRVDLLLMDHWFGFRGLCRAYLGIADNTVAPGRREERRSVGVERTFRDKTD 471
Query: 358 KALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKH 417
+ L +I E L D+ + G+T+T+K K TRA ++ KYISS+ DIL
Sbjct: 472 DEDIMATLIDIVEELGKDLDRLQYAGKTVTVKYK-------TRAKSIPKYISSATDILPI 524
Query: 418 ASVLLKAELPVSLRLIGLRVTQFNE 442
A LLK ELP+ +RL+G+R++ +
Sbjct: 525 AQELLKKELPLRIRLLGVRLSTLKD 549
>gi|213408879|ref|XP_002175210.1| DNA polymerase kappa [Schizosaccharomyces japonicus yFS275]
gi|212003257|gb|EEB08917.1| DNA polymerase kappa [Schizosaccharomyces japonicus yFS275]
Length = 532
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 186/479 (38%), Positives = 279/479 (58%), Gaps = 26/479 (5%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
K G + VD++K+ +V+YE SKGSK+FENE++K + Q+K + M+ + +L + ++ +K
Sbjct: 30 KPGQEEVDQQKINQVIYEASKGSKFFENEQKKARYWQEKNKEMKLKLEELELGLENNPEK 89
Query: 89 VA---------DKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
A D+ I +EA RDLSR +HVD DAFYA+VE L P+ K KPMAVG +
Sbjct: 90 AAKWSEDMHKIDQLINSMEAQRDLSRIIVHVDCDAFYASVEELEKPAYKTKPMAVG-QGV 148
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+CTANY AR+FGVR+AMP FIAR+LCP LI +P KY S K+ +YDPN A
Sbjct: 149 LCTANYCARKFGVRSAMPEFIARQLCPNLIVLPLRMMKYQEKSAEIAKILQEYDPNMCKA 208
Query: 200 SLDEAYLDITEVCRERG--ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 257
S+DEAYLD+T+ + + + E LR +V E+ G+T S G+ N +LAK+ S++ K
Sbjct: 209 SVDEAYLDLTDYLTKHNEEETVEAVVEHLRQTVAEKTGITVSCGIGANLMLAKIASNMRK 268
Query: 258 PNGQFVLPNDRMAVMTFISSLPIRK--------IGGIGKVTEHILRDVFGINTCEEMLQK 309
PN QF + R A++ F+ +LP RK + GIG+V E L + ++ C ++L++
Sbjct: 269 PNDQFSIGRTREAILEFMDTLPCRKVYLELNHNVNGIGRVLEQELSSL-NVHNCGDILRR 327
Query: 310 GSLLCAVFSHSTADFFLSVGLGLGS--TNTPQARFRKSISSERTFSV-TEDKALLYRKLA 366
L VF + LS LG+ + A RKSI +E TFS+ + + +KL
Sbjct: 328 KGYLYYVFQEKSFQNLLSYALGISNNVVKPTDASNRKSIGNEMTFSIPMGSEKTISQKLK 387
Query: 367 EIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 426
++ +S M++ L G ++ LKLKT SFEVRTR L Y + S+ I K+ LL EL
Sbjct: 388 QLCFSVSETMKQRNLVGNSVVLKLKTTSFEVRTRQTNLNTYTNESDIIYKYVLQLLSYEL 447
Query: 427 PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCL 485
PV +RL+G+R+T+ + + S + T N + S+ ++ D S+ I ++CL
Sbjct: 448 PVQVRLLGVRMTKLQDASIYEESKLS-FTKENGVQCPICSRYLINDACSVDKHI-EECL 504
>gi|67525831|ref|XP_660977.1| hypothetical protein AN3373.2 [Aspergillus nidulans FGSC A4]
gi|40744161|gb|EAA63341.1| hypothetical protein AN3373.2 [Aspergillus nidulans FGSC A4]
Length = 609
Score = 301 bits (771), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 165/418 (39%), Positives = 246/418 (58%), Gaps = 21/418 (5%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG D VD+ K +F +E+ ++ + +KI+ + +L S +S +
Sbjct: 47 KAGQDSVDQRK-------------FFNHEQIRDNVLTEKIQRILKEKTRLESLNLSVDLR 93
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+AD+ E+E+TRDLS+ +HVD DAF+AAVE L P LK PMAVG ++ T NYEAR
Sbjct: 94 LADQVFAEIESTRDLSQYVVHVDCDAFFAAVEELDRPELKTVPMAVGK-GVLTTCNYEAR 152
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FG R+ M F+A+KLCP+LI +P ++ KYT + R + +YDP F +AS+DEAYL+I
Sbjct: 153 KFGCRSGMASFVAKKLCPQLICLPQNYEKYTAKAQEIRAILAQYDPQFESASIDEAYLNI 212
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T CRE+ + E +R + E+ ++ SAG+A N +AK+CS+ NKPNGQF +PN++
Sbjct: 213 TAYCREKQLDPDEAVSRMRAEILEKTKISVSAGIAANAKIAKICSNRNKPNGQFRVPNEK 272
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
A+M F+ LP+RKI G+G+V E L D GI TC ++ + + L +F F
Sbjct: 273 NAIMEFMRDLPMRKINGVGRVFEREL-DSIGIKTCGDIFPQRAYLAKLFGEKALHFLAQC 331
Query: 329 GLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
LG+G T A RKS+ +ERTF + KL A+ L D+ + GRTL
Sbjct: 332 YLGVGRTKIQPAESYERKSVGTERTFHEISKREEFREKLWSCAQELEKDLSRTQFMGRTL 391
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
LK+K A+FEV TR + +S+++D+ A + L+ E+P + LRL+G+R T
Sbjct: 392 VLKVKLATFEVLTRQYQPARAVSTAKDLFTSALPMLEKLEKEIPNMKLRLLGIRCTNL 449
>gi|255955303|ref|XP_002568404.1| Pc21g13870 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590115|emb|CAP96284.1| Pc21g13870 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 611
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 178/454 (39%), Positives = 265/454 (58%), Gaps = 17/454 (3%)
Query: 1 MERSDGECASSSENPR--PWQSYHTVYTN------AKAGMDGVDKEKVQKVVYEMSKGSK 52
ME S GE +S P P + + T+ KAG D VD++KV +++Y SKGSK
Sbjct: 1 MEYS-GENPASDPQPETTPGEEFGTLKYQLLGPSLTKAGQDSVDQQKVSEIIYNASKGSK 59
Query: 53 YFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDM 112
+F +E++++ + KIE + +L ++ + AD+ + ELE +RDLS+ +HVD
Sbjct: 60 FFNHEQQRDRNLTLKIERIVKEKTRLERLDLNSELRRADEYLAELELSRDLSQHVIHVDC 119
Query: 113 DAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVP 172
DAF+AAVE L P LK PMAVG ++ T NY AR+FGVR+ M F+A+KLCP+L+ +P
Sbjct: 120 DAFFAAVEELDRPELKRVPMAVGK-GVLTTCNYLARKFGVRSGMASFVAKKLCPQLVLLP 178
Query: 173 TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYE 232
++ KYT + R + +YDP F +AS+DEAYL+IT C E + E+ +R + E
Sbjct: 179 QNYEKYTAKAKEIRAIMAEYDPLFESASIDEAYLNITAYCNENHLEPDEVVRRMRAEILE 238
Query: 233 EAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEH 292
++ SAG+A N +AK+ S+INKPNGQF +PNDR A+M F+ L +RK+ GIG+V E
Sbjct: 239 TTKVSVSAGIAANAKIAKIASNINKPNGQFQVPNDRDAIMEFMRDLSVRKVNGIGRVFER 298
Query: 293 ILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP--QARFRKSISSER 350
L + G+ C ++ +LL +F F LGLG T + RKS+S+E
Sbjct: 299 ELESI-GVKKCGDIFPHRALLTKLFGEKAFQFLAQCYLGLGRTKMEPVETHERKSVSTET 357
Query: 351 TFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISS 410
TF DK L KL A+ L D+ + +GRTL LK+K +FEV TR + +S
Sbjct: 358 TFHEIGDKEELRAKLWWAAQELEKDLARTQFKGRTLVLKVKLHTFEVLTRQTAPPRAVSL 417
Query: 411 SEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
++D+ A + L+ ++P + LRL+GLR +
Sbjct: 418 AKDLYSFALPMLAKLERDIPDMKLRLLGLRCSNL 451
>gi|242206923|ref|XP_002469316.1| predicted protein [Postia placenta Mad-698-R]
gi|220731571|gb|EED85414.1| predicted protein [Postia placenta Mad-698-R]
Length = 527
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 174/448 (38%), Positives = 266/448 (59%), Gaps = 38/448 (8%)
Query: 26 TNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHM---RARCAKL--TS 80
+ KAG+ D+ ++ +V+ E SKGSK++ENE+RK+ + ++I + R K+ T
Sbjct: 10 STTKAGL-AKDQSEINRVIAEASKGSKFYENEKRKDKDLTERIARILKHRDEVLKIDSTE 68
Query: 81 PVISHYQKVAD--KRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS 138
PV ++AD +++++LE+ RDLS++ +HVDMDAFYA+VE L +PSL+GK A
Sbjct: 69 PV-----QIADSKRKLVKLESQRDLSQTIVHVDMDAFYASVELLDDPSLEGKAFA----- 118
Query: 139 MICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMA 198
+YEAR++GVR+ MP FIA+KLCP+LI V F +Y S +F +YDP+ A
Sbjct: 119 -----SYEARKYGVRSGMPSFIAKKLCPDLILVENHFHRYMELSKKVMNIFRRYDPSMCA 173
Query: 199 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 258
A DE YL+IT CR++ ++ E ++R +VY+E LT SAG+APN+ NKP
Sbjct: 174 AGCDEGYLNITAYCRDQQLTADECVRQMRETVYQETKLTVSAGIAPNK---------NKP 224
Query: 259 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 318
NGQF L + A+ F+ +L IRKI G+G+V E +L D GI TC ++ ++ +
Sbjct: 225 NGQFTLDFEPRAIKAFMRNLSIRKIPGVGRVNERLL-DSIGIKTCGDIYTHRVVVSLMDK 283
Query: 319 HSTADFFLSVGLGLGS--TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 376
F L LG+ S Q RKSI +ERTF ++ + KL E+A L +DM
Sbjct: 284 EFGLQFLLQTYLGIASNVVQPGQREERKSIGAERTFHPLGNQDAILCKLEEVAAELESDM 343
Query: 377 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLR 436
G G+T+TLK K +++V TRA + +++S+ ++ L +A LL E+P++LRLIGLR
Sbjct: 344 TSGGWTGKTVTLKFKLDTYQVFTRAKSFDRWVSTKKEDL-YAVKLLMPEMPLTLRLIGLR 402
Query: 437 VTQFNEDKVRAPSDPTQKTLTNFMTSGH 464
VT+ + +R S+ + F S +
Sbjct: 403 VTKLKD--LRVESEKKASGIKRFFQSAN 428
>gi|409044729|gb|EKM54210.1| hypothetical protein PHACADRAFT_145933 [Phanerochaete carnosa
HHB-10118-sp]
Length = 589
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 181/424 (42%), Positives = 256/424 (60%), Gaps = 16/424 (3%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG+ D+ ++ +++ E SKGSK++ENE+RK+ + ++I AR K V+ +
Sbjct: 34 KAGL-AKDQTEINRIIAEASKGSKFYENEKRKDKELTERI----ARIIKARDDVL----R 84
Query: 89 VAD--KRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYE 146
AD + ++E RDLS+ +HVDMDAFYA+VE L +PSL KP AVG +I TA+Y
Sbjct: 85 EADIGTSLAKMEVQRDLSQIIVHVDMDAFYASVELLDDPSLGDKPFAVG-HGVISTASYA 143
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
AR+ GVR+ M F+ARKLCP+L+ VP F++Y S +F +YDP AA DE YL
Sbjct: 144 ARKHGVRSGMAEFVARKLCPQLVVVPCHFSRYMELSRQVMDIFRRYDPTMCAAGCDEGYL 203
Query: 207 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 266
+IT C E +S + +R +V+ E LT SAG+APN++LAK+CSD NKPNGQF L
Sbjct: 204 NITPYCEEYMLSADDCVRGMRETVFRETKLTVSAGIAPNKVLAKICSDRNKPNGQFALDF 263
Query: 267 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 326
AV F+ L IRKI G+G+V E +L D GI TC ++ + L + + F L
Sbjct: 264 TPAAVKAFMHDLSIRKIPGVGRVNERLL-DSVGIQTCGDIYTHRATLALMDKYFGLHFLL 322
Query: 327 SVGLGLGS--TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 384
LG+ S Q RKSI +ERTF K + RKL E+A L+ D+++ G G+
Sbjct: 323 QTYLGIASNVVQPGQREERKSIGAERTFHTISSKEDILRKLEEVAAELNEDLERTGWTGK 382
Query: 385 TLTLKLKTASFEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRVTQFNED 443
T+TLK K +++V TRA + ++IS+ ED+ LL ELP+ LRLIGLRV + +
Sbjct: 383 TVTLKYKLDTYQVFTRAKSFDRWISTKKEDLFATGKELLLPELPLRLRLIGLRVMKLKDL 442
Query: 444 KVRA 447
+V A
Sbjct: 443 RVDA 446
>gi|443893809|dbj|GAC71265.1| predicted DNA damage inducible protein [Pseudozyma antarctica T-34]
Length = 658
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 176/428 (41%), Positives = 255/428 (59%), Gaps = 17/428 (3%)
Query: 26 TNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARC-AKLT----- 79
++AKAG+ D++++ K++Y++SKGSK+F+NE +K+A ++I + AR KL
Sbjct: 71 SSAKAGL-AKDQDEINKIIYQVSKGSKFFDNERKKDAQTTERINALLARRDQKLLQVPPG 129
Query: 80 SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
SP ++ + + LE TRDLSR+ LH D+D FYAAVE +PSLKGK VG+ +
Sbjct: 130 SPEWLSIERKINDMAMRLEDTRDLSRTILHTDIDMFYAAVELARDPSLKGKCFGVGS-GV 188
Query: 140 ICTANYEARR-FGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMA 198
+ TA+YEARR +GVR+ M F+A+ LCP LI V D Y S VF +YD N
Sbjct: 189 LVTASYEARRGYGVRSGMAVFVAKALCPHLIVVKNDMQSYVAASHKVMAVFERYDENLAQ 248
Query: 199 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 258
ASLDEAYLDIT+ + S E+ ++LR V E LT S G+APN +LAK+ SD NKP
Sbjct: 249 ASLDEAYLDITDYLEQHSGSIDEVVQQLRDEVRNETQLTVSVGIAPNTMLAKISSDRNKP 308
Query: 259 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 318
+GQF + DR ++ F+ LP RKI GIG+V E IL + G+NTC ++ L
Sbjct: 309 DGQFRVHPDRKTIVDFMRDLPCRKIPGIGRVNERIL-ESLGVNTCGDIWHNRVQLWLALD 367
Query: 319 HSTADFFLSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 376
D+ + LG+G+T P R RKS+ E TFS T D L L E A+ + D+
Sbjct: 368 -GKIDWLIKAHLGIGNTVVEPSKREQRKSVGREHTFSPTSDTQSLLDLLKESAQRVQNDL 426
Query: 377 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRL 432
++ +G+T+TL K +++ +RA T + + ++E++ + S LL E+ P+SLRL
Sbjct: 427 ERLDFKGKTVTLVAKRDNYQRFSRARTSTRLVHTAEELYEITSSLLLQEIERQGPLSLRL 486
Query: 433 IGLRVTQF 440
IG+RVT
Sbjct: 487 IGVRVTHL 494
>gi|402224218|gb|EJU04281.1| DNA/RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 582
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 169/417 (40%), Positives = 251/417 (60%), Gaps = 17/417 (4%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPV-ISHYQ 87
KAG+ D+ ++ +++ E SKGSK++ENE+RK+ + +I + + + V ++ +
Sbjct: 23 KAGL-AQDQSEINRIIAEASKGSKFYENEKRKDEELTARINRLLEKRDSVIKGVDLARLE 81
Query: 88 KVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEA 147
K AD+ ++++EA RDL++ +HVD DAFYA+VE + NP LKGK ++ TA+YEA
Sbjct: 82 KAADQILIDMEARRDLTQIIVHVDADAFYASVEVMDNPDLKGK-GFGVGGGVLTTASYEA 140
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+ GVR+AMP IA+KL PELI VP F++Y+ S + +YDP A DEAYL+
Sbjct: 141 RKCGVRSAMPMHIAKKLYPELIIVPCRFSRYSEVSKSLMSILRRYDPTMNPAGFDEAYLN 200
Query: 208 ITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 267
IT+ C E + E + +R V++E GLT SAG+AP NKP+GQF+LP D
Sbjct: 201 ITQYCSEHELGAEECVQVIRDEVHKETGLTISAGIAP-----------NKPSGQFMLPFD 249
Query: 268 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLS 327
R ++ F+ L +RK+ GIG+V E IL + G+ TC ++ + +++ + L
Sbjct: 250 RKGIVAFMKDLSVRKVPGIGRVNERIL-EAIGVKTCGDIYTQRAVITLLDHELGLHGLLH 308
Query: 328 VGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 385
LG+GS P R RKS+ ERTF D + L L IAE L D ++ G G+T
Sbjct: 309 AHLGIGSNVVEPHIREERKSVGVERTFRAVGDSSKLMEILENIAESLEEDCEQTGWAGKT 368
Query: 386 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 442
LTLK K ++EV TRA +L +YI S EDI S LL+ ELP+++RL+GLR+T +
Sbjct: 369 LTLKYKLHTYEVFTRARSLNRYIRSKEDIFSIGSELLRKELPLTVRLLGLRLTHLKD 425
>gi|343428792|emb|CBQ72337.1| related to DNA polymerase kappa [Sporisorium reilianum SRZ2]
Length = 654
Score = 296 bits (758), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 177/428 (41%), Positives = 258/428 (60%), Gaps = 17/428 (3%)
Query: 26 TNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAK--LTSPVI 83
++AKAG+ D++++ +++YE+SKGSK+FENE +K+A +I + AR + L P
Sbjct: 62 SSAKAGL-AKDQDEINRIIYEVSKGSKFFENERKKDAQTTGRINALLARRDQKLLQVPPG 120
Query: 84 SHYQKVADKRI----LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
S + +++I LE +RDLSR+ LH D+D FYAAVE +PSLKGK VG+ +
Sbjct: 121 SVEWQSIERKIEDMATRLENSRDLSRTILHTDIDMFYAAVELARDPSLKGKCFGVGS-GV 179
Query: 140 ICTANYEARR-FGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMA 198
+ TA+Y+ARR +GVR+ M F+A+ LCP LI V D Y S VF +YD N
Sbjct: 180 LVTASYQARRGYGVRSGMAVFVAKALCPHLIVVKNDMQSYVQASQKVMAVFEQYDENLAK 239
Query: 199 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 258
ASLDEAYLDIT+ + G S ++ ++LR V E LT S G+APN +LAK+ SD NKP
Sbjct: 240 ASLDEAYLDITDYVEQHGGSIDQVVQQLRDQVRSETQLTVSVGIAPNTMLAKISSDRNKP 299
Query: 259 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 318
+GQF + DR A++ F+ LP RKI GIG+V E IL + G++TC E+ K L F
Sbjct: 300 DGQFRVQPDRKAIVDFMRDLPCRKIPGIGRVNERIL-ESLGVSTCGEIWNKRVELWLAFD 358
Query: 319 HSTADFFLSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 376
++ + LG+G+T P R RKS+ E TFS T D L L E A+ + D+
Sbjct: 359 -GKIEWLVKAHLGIGNTVVEPSKREERKSVGREHTFSPTSDTQALLDLLKESAQRVEQDL 417
Query: 377 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRL 432
++ +G+T+TL K +++ +RA T + + +E++ + S LL E+ +SLRL
Sbjct: 418 ERLDFKGKTITLVAKRDNYQRFSRARTSTRLVHRAEELYEITSSLLLHEIEREGQLSLRL 477
Query: 433 IGLRVTQF 440
IG+RVTQ
Sbjct: 478 IGVRVTQL 485
>gi|403376374|gb|EJY88163.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 685
Score = 295 bits (755), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 160/434 (36%), Positives = 254/434 (58%), Gaps = 15/434 (3%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCA--KLTSPV 82
Y KAGMD +DKEK+ K + E S GS Y++ E ++ + K + M+A+ + +
Sbjct: 188 YVAFKAGMDSIDKEKINKFILEASSGSSYYKREIQRTEAAKVKADIMKAKIKSHQKNERL 247
Query: 83 ISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICT 142
+ A + +++++ RDL+R+W+H+DMD FYAAVE NP L KP+A+G+ SM+ T
Sbjct: 248 WKQSSQQAKQIMIDVQKDRDLTRTWMHIDMDMFYAAVEIRDNPELADKPVAIGSYSMVST 307
Query: 143 ANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLD 202
ANY AR+FGVR+AMPGFIA+KLCPELIF+P + KY+ S + + + +YDPN+ + D
Sbjct: 308 ANYVARKFGVRSAMPGFIAKKLCPELIFIPNNMKKYSKVSKVFKGILEQYDPNYESLGSD 367
Query: 203 EAYLDITEVCRERGIS---GIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 258
EA LDIT+ ++ GI+ + ++R ++ LTCSAG+A N++LAK+C+D+NKP
Sbjct: 368 EANLDITDYLNANNMNDDEGIQKLVFQIREQIFSTTRLTCSAGIACNKMLAKICTDMNKP 427
Query: 259 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCAV 316
NGQ L D ++ F+ L +RKI GIG++TE IL D+F T +++L K +
Sbjct: 428 NGQTYLKPDEQTILDFMKVLSVRKIPGIGRMTELILAQLDIF---TLQDVLDKQVQIQIA 484
Query: 317 FSHSTADFFLSVGLGLGST--NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA 374
T F LG+ +KSIS TF K+ ++ L+
Sbjct: 485 LKERTVYFLFRAALGISRNFHEEEDDDCQKSISISETFRPLVTLEQFKDKINQLCTELAE 544
Query: 375 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLI 433
+ K + G ++L++KT F V +++TL+ YI + ED+ ++ LL+ P RLI
Sbjct: 545 RVDKRKVAGLNISLEIKTTEFSVLQKSLTLKSYIWTQEDLQLYSHQLLEIMWPSKPARLI 604
Query: 434 GLRVTQF-NEDKVR 446
G++++ N+ +V+
Sbjct: 605 GVKLSHLKNQHEVK 618
>gi|403376378|gb|EJY88165.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 705
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 162/435 (37%), Positives = 257/435 (59%), Gaps = 17/435 (3%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCA--KLTSPV 82
Y KAGMD +DKEK+ K + E S GS Y++ E ++ + K + M+A+ + +
Sbjct: 87 YVAFKAGMDSIDKEKINKFILEASSGSSYYKREIQRTEAAKVKADIMKAKIKSHQKNERL 146
Query: 83 ISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICT 142
+ A + +++++ RDL+R+W+H+DMD FYAAVE NP L KP+A+G+ SM+ T
Sbjct: 147 WKQSSQQAKQIMIDVQKDRDLTRTWMHIDMDMFYAAVEIRDNPELADKPVAIGSYSMVST 206
Query: 143 ANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLD 202
ANY AR+FGVR+AMPGFIA+KLCPELIF+P + KY+ S + + + +YDPN+ + D
Sbjct: 207 ANYVARKFGVRSAMPGFIAKKLCPELIFIPNNMKKYSKVSKVFKGILEQYDPNYESLGSD 266
Query: 203 EAYLDITEVCRERGIS---GIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 258
EA LDIT+ ++ GI+ + ++R ++ LTCSAG+A N++LAK+C+D+NKP
Sbjct: 267 EANLDITDYLNANNMNDDEGIQKLVFQIREQIFSTTRLTCSAGIACNKMLAKICTDMNKP 326
Query: 259 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCAV 316
NGQ L D ++ F+ L +RKI GIG++TE IL D+F T +++L K +
Sbjct: 327 NGQTYLKPDEQTILDFMKVLSVRKIPGIGRMTELILAQLDIF---TLQDVLDKQVQIQIA 383
Query: 317 FSHSTADFFLSVGLGLGSTNTPQAR---FRKSISSERTFSVTEDKALLYRKLAEIAEMLS 373
T F LG+ S N + +KSIS TF K+ ++ L+
Sbjct: 384 LKERTVYFLFRAALGI-SRNFHEEEDDDCQKSISISETFRPLVTLEQFKDKINQLCTELA 442
Query: 374 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRL 432
+ K + G ++L++KT F V +++TL+ YI + ED+ ++ LL+ P RL
Sbjct: 443 ERVDKRKVAGLNISLEIKTTEFSVLQKSLTLKSYIWTQEDLQLYSHQLLEIMWPSKPARL 502
Query: 433 IGLRVTQF-NEDKVR 446
IG++++ N+ +V+
Sbjct: 503 IGVKLSHLKNQHEVK 517
>gi|63054412|ref|NP_587767.2| DinB translesion DNA repair polymerase, pol kappa
[Schizosaccharomyces pombe 972h-]
gi|74626930|sp|O74944.3|POLK_SCHPO RecName: Full=DNA polymerase kappa; AltName: Full=Meiotically
up-regulated gene 40 protein
gi|51950409|emb|CAA19259.2| DinB translesion DNA repair polymerase, pol kappa
[Schizosaccharomyces pombe]
Length = 547
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/429 (36%), Positives = 262/429 (61%), Gaps = 19/429 (4%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPV------ 82
K+G + V+++K+ +++YE SKGSK+FE E++++ ++ +IE ++ K S +
Sbjct: 45 KSGQENVNQKKINEIIYEASKGSKFFEAEQKRDRELRLRIEKVQVEVEKYQSKLRFDKAF 104
Query: 83 ---ISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
+ Q+ D + + A RDL++ +HVD DAFYA++E L NP LK PMAVG S+
Sbjct: 105 QREWTIRQESVDTTVEDFRAKRDLTQIIVHVDCDAFYASIEELKNPKLKSLPMAVGK-SV 163
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+CTANY AR+FGVR+AMP FIARK+CP+L+ +P + ++Y S + V +YD N A
Sbjct: 164 LCTANYVARKFGVRSAMPEFIARKICPDLVVIPLNLSEYAIKSKEIQNVLAQYDSNLCPA 223
Query: 200 SLDEAYLDITEVCRERGIS-GIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSD 254
S+DE Y+++T R + ++ +E + E++R V+EE G+T S G+A N+LLAK+ S+
Sbjct: 224 SIDEFYMNLTSHLRLQELAFTVENITMVVEKIRKQVHEETGVTVSCGIAANKLLAKIASN 283
Query: 255 INKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 314
KPN QF +P D + + F++ LP+R++ GIG+V E L + I TC ++ + +L
Sbjct: 284 KRKPNNQFFIPFDEIGISKFMNDLPVREVSGIGRVLEQQLLGL-EIKTCGDIQRNLVILS 342
Query: 315 AVFSHSTADFFLSVGLGLGSTNTPQ--ARFRKSISSERTFSVT-EDKALLYRKLAEIAEM 371
+F + L G G+T + RK+I SE TFS +++ KL + +
Sbjct: 343 YIFLPKSFQNLLRCSYGFGTTILDEYGESKRKTIGSEATFSSNLSSPSIIEYKLRLLVQN 402
Query: 372 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR 431
+S ++QK GL ++ +K KT+ F+V T+ ++ ++I S D+LK A LL+ P+++R
Sbjct: 403 VSENLQKRGLVTNSIAIKYKTSEFQVHTKQKSIGQFIHSESDLLKPALQLLRQSYPMTIR 462
Query: 432 LIGLRVTQF 440
L+G+R T+
Sbjct: 463 LLGVRATKL 471
>gi|403377318|gb|EJY88651.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 701
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 174/484 (35%), Positives = 277/484 (57%), Gaps = 22/484 (4%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCA--KLTSPV 82
Y KAGMD +DKEK+ + + E S GS Y++ E ++ + K + +A+ + +
Sbjct: 87 YVAFKAGMDSIDKEKINRCILEASSGSSYYKREIQRTEAAKIKADQRKAKIKSHQKNERL 146
Query: 83 ISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICT 142
+ A + +++++ RDL+R+W+H+DMD FYAAVE NP L KP+A+G+ SM+ T
Sbjct: 147 WKQSSQQAKQIMIDVQKDRDLTRTWMHIDMDMFYAAVEIRDNPELADKPVAIGSYSMVST 206
Query: 143 ANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLD 202
ANY AR+FGVR+AMPGFIA+KLCPELIF+P + KY+ S + + + +YDPN+ + D
Sbjct: 207 ANYVARKFGVRSAMPGFIAKKLCPELIFIPNNMKKYSKVSKVFKGILEQYDPNYESLGSD 266
Query: 203 EAYLDITEVCRERGIS---GIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 258
EA LDIT+ ++ GI+ + ++R ++ LTCSAG+A N++LAK+C+D+NKP
Sbjct: 267 EANLDITDYLNTNNMNDDEGIQKLVFQIREQIFSTTRLTCSAGIACNKMLAKICTDMNKP 326
Query: 259 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCAV 316
NGQ L D+ ++ F+ L +RKI GIG++TE IL D+F T +++L K +
Sbjct: 327 NGQTYLKPDQQTILDFMKVLSVRKIPGIGRMTELILAQLDIF---TLQDVLDKQVQIQIA 383
Query: 317 FSHSTADFFLSVGLGLGSTNTPQAR---FRKSISSERTFSVTEDKALLYRKLAEIAEMLS 373
T F LG+ S N + +KSIS TF K++++ L+
Sbjct: 384 LKERTVYFLFRAALGI-SRNFHEEEDDDCQKSISISETFRPLVTLEQFKDKISQLCTELA 442
Query: 374 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRL 432
+ K + G ++L++KT F V +++TL+ YI + ED+ ++ LL+ P RL
Sbjct: 443 ERVDKRKIAGLNISLEIKTTEFSVLQKSLTLKSYIWTQEDLQLYSHQLLEIMWPSKPARL 502
Query: 433 IGLRVTQF-NEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQN--SLGSDINDDCLIDDK 489
IG++++ N+ +V+ D + S A +KI +Q L +I DC+ D K
Sbjct: 503 IGVKLSHLKNQHEVK--KDRNIGGFFDNKISKEAYQKI-NEQKLLKLHEEIKKDCIDDIK 559
Query: 490 ETSV 493
T V
Sbjct: 560 CTKV 563
>gi|71022115|ref|XP_761288.1| hypothetical protein UM05141.1 [Ustilago maydis 521]
gi|46097782|gb|EAK83015.1| hypothetical protein UM05141.1 [Ustilago maydis 521]
Length = 682
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 176/428 (41%), Positives = 253/428 (59%), Gaps = 17/428 (3%)
Query: 26 TNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARC-AKLTSPVIS 84
++AKAG+ D++++ +++YE+SKGSK+FENE +K+A ++I + AR KL
Sbjct: 62 SSAKAGL-AKDQDEINRIIYEVSKGSKFFENERKKDAQTTERINALLARRDQKLLQVSPG 120
Query: 85 HYQKVADKRILE-----LEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
+ +A +R +E LE +RDLSR+ LH D+D FYAAVE +PSLKGK VG+ +
Sbjct: 121 SAEWLAIERKIEDIATRLENSRDLSRTILHTDIDMFYAAVELARDPSLKGKCFGVGS-GV 179
Query: 140 ICTANYEARR-FGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMA 198
+ TA+YEARR +GVR+ M F+A+ LCP LI V D Y S +F +YD N
Sbjct: 180 LVTASYEARRGYGVRSGMAVFVAKALCPHLIVVKNDMQSYVQASQKVMAIFEQYDENLAK 239
Query: 199 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 258
ASLDEAYLDITE + S ++ ++LR V LT S G+APN +LAK+ SD NKP
Sbjct: 240 ASLDEAYLDITEYVEQNASSIDQVVQQLRNQVRSHTQLTVSVGIAPNTMLAKISSDRNKP 299
Query: 259 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 318
+GQF + DR ++ F+ +LP RKI GIG+V E IL + G+ TC E+ K L F
Sbjct: 300 DGQFRIQPDRKVIVDFMRNLPCRKIPGIGRVNERIL-ESLGVTTCGEIWDKRVELWLSFD 358
Query: 319 HSTADFFLSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 376
++ + LG+G+T P R RKS+ E TFS T D L L E A+ + D+
Sbjct: 359 -GKIEWLIKAHLGIGNTVVEPSKREERKSVGREHTFSPTSDTKALLDLLKESAQRVEQDL 417
Query: 377 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRL 432
+ + +T+TL K +F+ +RA T + + +E++ S LL E+ +SLRL
Sbjct: 418 ARLDFKAKTITLVAKRDNFQRFSRARTSTRLVHRAEELYDITSSLLMQEIEREGAISLRL 477
Query: 433 IGLRVTQF 440
IG+RVTQ
Sbjct: 478 IGVRVTQL 485
>gi|170092351|ref|XP_001877397.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647256|gb|EDR11500.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 420
Score = 291 bits (746), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 158/392 (40%), Positives = 240/392 (61%), Gaps = 15/392 (3%)
Query: 26 TNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPV-IS 84
++ KAG+ +D+ ++ +++ + SKGSK+++NE+RK+ + ++I ++ + V I
Sbjct: 26 SSGKAGL-ALDQTEINRIIADASKGSKFYDNEKRKDKELTERINRIKKEKDESMRGVDIR 84
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTAN 144
+ D+ +++L+A RDLS+ +HVDMDAF+A+VE L NP L GKP VG ++ TA+
Sbjct: 85 KVEAAVDQLLVQLQAQRDLSQIIVHVDMDAFFASVELLYNPELAGKPFGVGR-GVLTTAS 143
Query: 145 YEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA 204
YEAR++GVR+ MPGFIA+KLCP+LI V +F++Y+ S +F +YDPN A DEA
Sbjct: 144 YEARKYGVRSGMPGFIAKKLCPDLILVSNNFSRYSEMSAKVMDIFRRYDPNMCPAGSDEA 203
Query: 205 YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 264
YL+ITE G++ +E+R +V+ LT SAG+APN+ NKPNGQF +
Sbjct: 204 YLNITEYSVRHGLTAEVCVQEMRKAVHAITQLTVSAGIAPNK---------NKPNGQFQI 254
Query: 265 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 324
P D ++ F+ L IRK+ GIG+V E +L + GI TC ++ ++ + F
Sbjct: 255 PFDSASIKAFMHHLSIRKVPGIGRVNERLLESI-GIKTCGDIYMHRVVISVMDKRFGLKF 313
Query: 325 FLSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 382
L LG+ S P R RKSI +ERTFS DK + +KL EIA L DM + G
Sbjct: 314 LLQTHLGIASNIVEPHLREERKSIGAERTFSSLGDKEKILQKLQEIAAELEKDMSRNGWT 373
Query: 383 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDI 414
GRT+TLK K +++V TRA T +Y+ + E++
Sbjct: 374 GRTVTLKYKLDTYQVFTRAKTFDRYVFTKEEL 405
>gi|327262983|ref|XP_003216301.1| PREDICTED: DNA polymerase kappa-like [Anolis carolinensis]
Length = 820
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 192/509 (37%), Positives = 278/509 (54%), Gaps = 78/509 (15%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM G+DKEK+ K++ E SKGSK++ENE +K+ + ++IE M K+T I Q
Sbjct: 25 KAGMQGLDKEKINKIILEASKGSKFYENELKKDQQVNKRIEKMLEVKKKITEQQIMKTQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE RDLS + +H+DMDAFYAAVE +P L+ KP+AVG+MSM+ T+NY AR
Sbjct: 85 QMDKIAMELERNRDLSCTIVHIDMDAFYAAVEMRDDPELRDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
R+GVRAAMPGFIA+KLCP L VP +FTKY S+ R++ +YDPNFM LDEAYL+I
Sbjct: 145 RYGVRAAMPGFIAKKLCPHLTIVPLNFTKYREVSEEVREILAEYDPNFMPMGLDEAYLNI 204
Query: 209 TEVCRER-----------------------------------GISGIEIAEELRTSVYEE 233
TE ER + E E +++V +
Sbjct: 205 TEHLEERKNWDEGKRKHLIRTKNSSLHVLFDDDISKCKQNDPSLLHSEEQEHQQSTVLTK 264
Query: 234 A---GLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVT 290
+ G + V R + + + G + PN +A M + P + I
Sbjct: 265 SVVFGTSAEEAVEEIRFRIEQKTKLTASAG--IAPNTMLAKMCSDQNKPNGQF-RISPDR 321
Query: 291 EHIL--------RDVFGIN-TCEEMLQK-GSLLCA-----------VFSHSTADFFLSVG 329
EH++ R V GI E+ML+ G + C +FS ++ FL +
Sbjct: 322 EHVMNFIKDLPIRKVPGIGKVTEKMLRALGIVTCTDLYQQRALISLLFSETSWHNFLEIS 381
Query: 330 LGLGSTNTPQARFRKSISSERTFSV--TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 387
LGLGST + RKS+S+ERTF+ TE++ Y E+ L+ D++KEGL+ RT+T
Sbjct: 382 LGLGSTQLERDGERKSMSTERTFNEINTEEQ---YSLCKELCADLAQDLKKEGLKARTVT 438
Query: 388 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF- 440
LKLK +FEV+TRA T+ +S+ E+I A LL +E+ P+ LRL+G+RV+ F
Sbjct: 439 LKLKNVNFEVKTRATTVLSAVSTEEEIFAIAKDLLGSEIVSVAPQPLRLRLMGVRVSGFL 498
Query: 441 NEDKVRAPSDPTQKTLTNFMTSGHASKKI 469
NE++ + QK++ NF+ ++ K+
Sbjct: 499 NEEEKKY----QQKSIVNFLGKQISASKL 523
>gi|326434682|gb|EGD80252.1| hypothetical protein PTSG_13123 [Salpingoeca sp. ATCC 50818]
Length = 860
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 171/434 (39%), Positives = 236/434 (54%), Gaps = 20/434 (4%)
Query: 32 MDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQKVAD 91
+ GVD EKV + S S Y + + + A + I R T VA+
Sbjct: 104 VKGVDHEKVMATILATSGSSAYMKRLQERSARTVRSIASKTQRWEAATPRERRRAAAVAE 163
Query: 92 KRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFG 151
+ + E + SR ++H DMDAFYA+VE NP LKGKPMAVG M M+ TANYEAR++G
Sbjct: 164 EAVREAQERLTFSRVYVHCDMDAFYASVEERDNPDLKGKPMAVGGMKMLTTANYEARKYG 223
Query: 152 VRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEV 211
VR+AMPG+I + LCP LI + F Y S + + + YDP+F++ LDEA LDIT+
Sbjct: 224 VRSAMPGYIGKALCPHLILIKPRFPVYKSVSAIFKSILRDYDPDFLSGGLDEASLDITDC 283
Query: 212 CRE---------RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 262
+ R + + EE+R + LT SAG+A R LAK CSD KPNGQ+
Sbjct: 284 VQRRMDRDLSLTREATACALVEEMRARILAATNLTASAGIACTRRLAKTCSDWKKPNGQY 343
Query: 263 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 322
LP +V F+ LPIRK+ GIG VTE +LR G+ T ML++ + L +F T
Sbjct: 344 FLPFTLDSVTAFLRPLPIRKLSGIGNVTEELLRG-LGVETVAGMLEQRAKLQLLFRPRTF 402
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 382
FF+ V G+ T + R RKSIS+ERTF T + L L I L+A+MQ++ L
Sbjct: 403 QFFMHVAHGVSVPRT-RTRERKSISTERTFDATSSRVQLLSILNRICSKLTAEMQEKQLA 461
Query: 383 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLI 433
GR LTLK+K A+F V R+VTL I+ S + ++ EL ++RL+
Sbjct: 462 GRCLTLKVKLATFHVLQRSVTLPTPIADSSVLFAQMRAIMARELEAASPSPSRMPAVRLL 521
Query: 434 GLRVTQFNEDKVRA 447
G+RV+ + RA
Sbjct: 522 GVRVSSLTFGRNRA 535
>gi|388856805|emb|CCF49592.1| related to DNA polymerase kappa [Ustilago hordei]
Length = 680
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 172/428 (40%), Positives = 252/428 (58%), Gaps = 17/428 (3%)
Query: 26 TNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAK--LTSPVI 83
++AKAG+ D++++ +++Y++SKGSK+FENE +K+A ++I + AR + L P
Sbjct: 67 SSAKAGL-AKDQDEINRIIYQVSKGSKFFENERKKDAQTTERINALLARRDQKLLHVPPA 125
Query: 84 SHYQKVADKRI----LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
S +++I +LE +RDLSR LH D+D FYAAVE +PSLKGK VG+ +
Sbjct: 126 SPEWLAIERKIQDMATQLENSRDLSRIILHTDIDMFYAAVELARDPSLKGKCFGVGS-GV 184
Query: 140 ICTANYEARR-FGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMA 198
+ TA+YEARR +GVR+ M F+A+ LCP LI V +D Y S VF +YD N
Sbjct: 185 LVTASYEARRGYGVRSGMATFVAKALCPHLIVVKSDMQSYLQASHKVMAVFEQYDENLAK 244
Query: 199 ASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 258
ASLDEAYLDITE + + ++ + LR V E LT S G+APN +LAK+ SD NKP
Sbjct: 245 ASLDEAYLDITEYVEQHRGTIDQVVQHLRDQVRNETQLTVSVGIAPNTMLAKISSDRNKP 304
Query: 259 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 318
+GQF + DR A++ + LP RKI GIG+V E IL + G+ TC E+ K L
Sbjct: 305 DGQFRVQPDRKAILDLMRHLPCRKIPGIGRVNERIL-ESLGVTTCGEIWNKRVQLWLALD 363
Query: 319 HSTADFFLSVGLGLGSTNT-PQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM 376
+ + LG+G+T P R RKS+ E TFS T D L L E ++ + D+
Sbjct: 364 -GKIQWLIKAHLGIGNTLVEPSKREERKSVGREHTFSPTSDTQALLHFLKESSDRVQQDL 422
Query: 377 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRL 432
++ +G+T+TL K +F+ +RA T + ++ ++++ LL E+ P+SLRL
Sbjct: 423 ERLEFKGKTVTLIAKRENFQRFSRARTSTRPVNRAQELYDITRSLLLQEIEREGPLSLRL 482
Query: 433 IGLRVTQF 440
IG+RVT
Sbjct: 483 IGVRVTHL 490
>gi|145517234|ref|XP_001444500.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411922|emb|CAK77103.1| unnamed protein product [Paramecium tetraurelia]
Length = 591
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 158/432 (36%), Positives = 247/432 (57%), Gaps = 10/432 (2%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARC--AKLTSPV 82
Y KAG++G D+ +++V+ + ++GS+Y++ ++ K + QK+ M+ K
Sbjct: 8 YYGNKAGVEGADQ--IKQVIDDATRGSEYYKRQQEKRQQVLQKVNKMQMELDSYKNNEQK 65
Query: 83 ISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICT 142
I +++ ++ E + D R W H DMD FY A E L P LK KP+AVG +++ T
Sbjct: 66 IKETKEIIQNKVKEFQINTD--RIWAHFDMDMFYVACELLDKPELKDKPVAVG-QTIVST 122
Query: 143 ANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLD 202
ANY AR+FGVR+AMPGF+A+KLCPE+IF+P F KY S++ + KYD N + LD
Sbjct: 123 ANYVARKFGVRSAMPGFVAKKLCPEIIFIPCHFEKYKSVSNIFMTILKKYDDNLESMGLD 182
Query: 203 EAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 262
EA LD+TE + E +R + LT S GV PN+++AK+ S+INKPNG
Sbjct: 183 EANLDLTEYINNSQEDPAILCENIRKDILLATQLTASCGVGPNKMIAKLASEINKPNGLH 242
Query: 263 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 322
V+ AV+ F+ LPIRKI GIG +TE IL + NTC+++ + L +F+ T
Sbjct: 243 VVEQSATAVLNFLEKLPIRKIPGIGNITEQILSGL-NFNTCKDVRDRADELYVIFTPKTF 301
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 382
++ G+ + + SIS +RTFS + K+ IAE L+ +MQ E
Sbjct: 302 EYIFYSCWGVARNYHVEFEDQHSISCQRTFSSISTQREFEDKVDYIAEKLAEEMQSEEKV 361
Query: 383 GRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQF- 440
G LTL +KT+ FE+R++++ L +Y + ++ I + LLK +L +RL+GL+++
Sbjct: 362 GNHLTLIIKTSKFEIRSKSLQLNQYTNQAKQIAIYGKQLLKIMQLDEPIRLLGLKMSSLA 421
Query: 441 NEDKVRAPSDPT 452
NE +++ S T
Sbjct: 422 NEKQIQKQSIST 433
>gi|193205700|ref|NP_001122692.1| Protein POLK-1, isoform a [Caenorhabditis elegans]
gi|374095490|sp|P34409.3|POLK_CAEEL RecName: Full=DNA polymerase kappa
gi|373253818|emb|CCD62142.1| Protein POLK-1, isoform a [Caenorhabditis elegans]
Length = 596
Score = 286 bits (731), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 188/493 (38%), Positives = 274/493 (55%), Gaps = 65/493 (13%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVIS 84
+ + KAGM+G+DKEK+ KV+ E + S Y +++++ I++K+ ++ R T
Sbjct: 4 FNDNKAGMNGLDKEKITKVIEENTSAS-YSSFSKKQQSRIEEKVLEIKNRLQTATREERQ 62
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTAN 144
+ + + ++LE++RDLSR + +DMDA++AAVE NP+L+ PMAVG+ +M+ T+N
Sbjct: 63 KSEILMENLEMKLESSRDLSRDCVCIDMDAYFAAVEMRDNPALRTVPMAVGSSAMLSTSN 122
Query: 145 YEARRFGVRAAMPGFIARKLCPELIFVPTD---FTKYT---------------------Y 180
Y ARRFGVRA MPGFI+ KLCP L VP + +TK +
Sbjct: 123 YLARRFGVRAGMPGFISNKLCPSLTIVPGNYPKYTKVSRQFSQIFMEYDSDVGMMSLDEA 182
Query: 181 YSDLT--------RKVF----------C---KYDPN---FMAASLDEAYLDITEVCR--- 213
+ DLT +K F C ++D N ++E+ E R
Sbjct: 183 FIDLTDYVASNTEKKTFKRHRFGGDCPCWLPRFDENENTLEDLKIEESICPKCEKSRKIY 242
Query: 214 ----ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRM 269
E G E E+R V + GLTCSAG+A N +LAK+CSD+NKPNGQ+VL ND+
Sbjct: 243 YDHVEFGTGREEAVREIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQYVLENDKN 302
Query: 270 AVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVG 329
A+M F+ LPIRK+GGIG+V E L+ I T +M K +L F+ + + FL
Sbjct: 303 AIMEFLKDLPIRKVGGIGRVCEAQLK-AMDIQTVGDMNLKKNLYPLCFTPLSQESFLRTA 361
Query: 330 LGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL-RGRTLTL 388
LGL + RKSIS ERTFS T D +L + EI ML D++K G+ G+T+TL
Sbjct: 362 LGLPGRPSESDPRRKSISVERTFSPTSDFNILLEEHQEICRMLEEDVRKSGIVGGKTVTL 421
Query: 389 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKVR 446
KLK +SF+V TR++T + S EDI K + LL+ E +RL+G+R++Q F ED+ +
Sbjct: 422 KLKLSSFDVLTRSLTPSDVVKSLEDIQKFSLELLEKEKGKEIRLLGVRLSQLIFEEDEKK 481
Query: 447 APSDPTQKTLTNF 459
KT+T F
Sbjct: 482 R-----SKTITEF 489
>gi|154271913|ref|XP_001536809.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408796|gb|EDN04252.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 373
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 153/377 (40%), Positives = 224/377 (59%), Gaps = 14/377 (3%)
Query: 1 MERSDGECASSSENPRPWQS--YHTVYTN-AKAGMDGVDKEKVQKVVYEMSKGSKYFENE 57
ME S+ A + +P + YH + + KAG VD++KV +++Y SKGSK+F +E
Sbjct: 1 MESSENNGADDDRSTKPDDTLKYHLLGPSLTKAGQSTVDQQKVSEIIYNASKGSKFFSHE 60
Query: 58 ERKEAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYA 117
+ ++ + KIE + A+ KL + Y + AD+ + ELE RDLS+ +H+D DAF+A
Sbjct: 61 KFRDQLLTTKIERILAQMQKLGKNDLLLYTRRADEYLAELEVGRDLSQIVVHIDCDAFFA 120
Query: 118 AVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTK 177
AVE L P L+ PMAVG ++ T NY AR+FG R+ M GFIARKLCP+LI +P ++ K
Sbjct: 121 AVEELDRPELRELPMAVGK-GVLTTCNYHARKFGCRSGMAGFIARKLCPDLILIPQNYQK 179
Query: 178 YTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLT 237
YT ++ R + +DP F +AS+DEAYL+IT C I LR+ V E+ +
Sbjct: 180 YTAKAEEIRAILSSFDPQFQSASIDEAYLNITGYCATNEIEPEVAVRRLRSQVMEQTKVA 239
Query: 238 CSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDV 297
SAG+APN +AK+CS+ NKPNGQ +PNDR +M F+S +P+RKI G+G+V E L +
Sbjct: 240 VSAGIAPNARIAKICSNWNKPNGQHYVPNDRSIIMKFMSEIPVRKINGVGRVFEREL-EA 298
Query: 298 FGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT--PQARFRKSISSERTFSVT 355
GI C ++ ++ +F F + LGLGST + RKS+ +ERTF
Sbjct: 299 IGIKNCSDIFTHRGVILPLFGEKCYKFLMQCYLGLGSTKIRPVEESERKSVGTERTFRDI 358
Query: 356 EDKALLYRKLAEIAEML 372
+D +A++ EML
Sbjct: 359 DD-------IADLQEML 368
>gi|321257026|ref|XP_003193442.1| hypothetical protein CGB_D2570C [Cryptococcus gattii WM276]
gi|317459912|gb|ADV21655.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 559
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/355 (44%), Positives = 214/355 (60%), Gaps = 11/355 (3%)
Query: 90 ADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARR 149
AD+ ++E+EATRDLS++ +HVDMDAFYA+VE +PSLKGK VG ++CTA+YEAR+
Sbjct: 105 ADRILMEVEATRDLSQTIVHVDMDAFYASVEVQRDPSLKGKAFGVGK-GVLCTASYEARK 163
Query: 150 FGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDIT 209
FGVR+AM FIA+KLCP +I F YT S ++V +YD N M ASLDE YL+IT
Sbjct: 164 FGVRSAMASFIAKKLCPHIILTDLHFDLYTEASKAVKEVLVQYDENLMMASLDEGYLNIT 223
Query: 210 EVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRM 269
++ E+ ++R V E+ LT SAG+A NR+LAK+CSD NKPNGQF L DR
Sbjct: 224 PYMSAHNMTASEVVTQIRAQVEEKTSLTISAGIAANRMLAKICSDKNKPNGQFELAFDRA 283
Query: 270 AVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVG 329
++ F+ LP+RKI G G+VTE L + I TC ++ +K L +
Sbjct: 284 TIVRFMRDLPVRKIPGFGRVTERCL-EGLEIETCGDIYEKRMDLLLMDHWFGFRGLCRAY 342
Query: 330 LGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 387
LG+ R RKS+ ERTF D + L EI E L D+ + G+T+T
Sbjct: 343 LGIADNTVAPGRREERKSVGVERTFRDKTDDEEIMATLIEIVEELGKDLDRLQFAGKTIT 402
Query: 388 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 442
+K K TRA ++ KYISS+ DIL A LLK ELP+ +RL+G+R++ +
Sbjct: 403 IKYK-------TRAKSISKYISSTRDILPVAQELLKKELPLRIRLLGVRLSTLKD 450
>gi|358060315|dbj|GAA94069.1| hypothetical protein E5Q_00716 [Mixia osmundae IAM 14324]
Length = 664
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/432 (40%), Positives = 251/432 (58%), Gaps = 29/432 (6%)
Query: 36 DKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAK---LTSPVISHYQKVADK 92
D +V+++++E SKGS + +NE+R++ Q KI+ + + +K LT+ + + + +
Sbjct: 64 DPAEVRQIIWEASKGSAFAQNEQRRDEATQLKIKVLLDQLSKRVALTNGNLRAEEIIVEA 123
Query: 93 RILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGV 152
++ LEATRDLS++ + VD DAFYA+VE L +PSLKGK AVG + + TA+YEAR++GV
Sbjct: 124 QVELLEATRDLSQTIVVVDCDAFYASVEELDDPSLKGKAFAVG-VGVCTTASYEARKYGV 182
Query: 153 RAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVC 212
R+A+ G+IA+KLCP LIFV DFTKY+ S + KYDP+ ASLDEAYL+IT
Sbjct: 183 RSALAGYIAKKLCPHLIFVKPDFTKYSQASARVMAILRKYDPHLAPASLDEAYLNITVFM 242
Query: 213 RERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVM 272
R G+S + ++RT + E GLT SAG+APN LLAK+ +D+NKP+GQ + R AV+
Sbjct: 243 RSSGLSADDAVMQMRTEIKETTGLTVSAGIAPNTLLAKMAADVNKPDGQCRVMPTRDAVV 302
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F S+ P+RKI G+G+VTE L + ++ K +L + + + DF L LGL
Sbjct: 303 EFTSAQPVRKIFGVGRVTEAWLV-ALDVRRISDIWAKRGMLHLIRTSISLDFLLKAYLGL 361
Query: 333 GST--NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 390
GS+ + RKS+ E TF D + L +AE L D Q GRTLTLK
Sbjct: 362 GSSLVSASTRESRKSVGREDTFGKLADYSGFLEVLRALAETLGNDCQSLQFAGRTLTLKF 421
Query: 391 KTASFEVRTRAVTLQKY--ISSSEDILKHASVLL------------KAELPVS------- 429
K +++E TRA T+ ++ +E K LL + PV
Sbjct: 422 KLSTYEPFTRARTIGQHHLYRDTEQFYKVGKELLDEAITERRKLYDDGKTPVGCGGTREI 481
Query: 430 -LRLIGLRVTQF 440
LRL+GLR+T
Sbjct: 482 ELRLLGLRITNL 493
>gi|115402397|ref|XP_001217275.1| hypothetical protein ATEG_08689 [Aspergillus terreus NIH2624]
gi|114189121|gb|EAU30821.1| hypothetical protein ATEG_08689 [Aspergillus terreus NIH2624]
Length = 540
Score = 281 bits (720), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 167/424 (39%), Positives = 245/424 (57%), Gaps = 17/424 (4%)
Query: 60 KEAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAV 119
++ + +KI+ + A+L +S + AD+ + ELE +RDL++ +HVD DAF+AAV
Sbjct: 5 RDRVLTEKIDRILKEKARLEKLDLSADLRRADQLLAELELSRDLTQYVIHVDCDAFFAAV 64
Query: 120 ETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYT 179
E L P LK PMAVG ++ T NYEAR+FGVR+ M F+A+KLCP+LI +P ++ KYT
Sbjct: 65 EELDRPELKTVPMAVGK-GVLTTCNYEARKFGVRSGMASFVAKKLCPQLILLPQNYDKYT 123
Query: 180 YYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCS 239
+ R +F +YDP F +AS+DEAYL+IT C E + E+ +R V E+ ++ S
Sbjct: 124 AKAQEIRAIFTQYDPLFESASIDEAYLNITAYCLENNLGPEEVVSRMRAEVLEKTQISVS 183
Query: 240 AGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFG 299
AG+A N +AK+ S+ NKPNGQF +PNDR A+M F+ LP+RK+ G+G+V E L D G
Sbjct: 184 AGIAANAKIAKIASNRNKPNGQFCVPNDRDAIMEFMRELPVRKVNGVGRVFEREL-DAIG 242
Query: 300 INTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT-PQARF-RKSISSERTFSVTED 357
+ TC ++ +LL +F F LGLG T P + RKS+ +E TFS
Sbjct: 243 VKTCGDIYPARALLAKLFGEKAFQFLAQCYLGLGRTKIQPVENYERKSVGTETTFSEIGT 302
Query: 358 KALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKH 417
K KL +A+ L D+ + +GRTL LK+K A+FEV TR + +S ++D+
Sbjct: 303 KEEFRAKLLWVAQELEKDLARTQFKGRTLVLKVKLATFEVLTRQYQPPRAVSVAKDLYAF 362
Query: 418 ASVL---LKAELP-VSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQ 473
A + L+ E+P + LRL+GLR T T+K +F + K G
Sbjct: 363 ALPMLEKLEKEIPNMKLRLLGLRCTHLVS---------TKKAGIDFFGWARSGKPSTGSA 413
Query: 474 NSLG 477
+S G
Sbjct: 414 DSSG 417
>gi|388582806|gb|EIM23110.1| DNA/RNA polymerase [Wallemia sebi CBS 633.66]
Length = 499
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/335 (43%), Positives = 210/335 (62%), Gaps = 4/335 (1%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPE 167
+H DMD FYAAVE L NPSLKGK VG ++ TA+YEAR+FG+R+AMP FIA KLC
Sbjct: 1 MHCDMDMFYAAVEVLDNPSLKGKAFGVGK-GILTTASYEARKFGIRSAMPCFIAHKLCDH 59
Query: 168 LIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELR 227
I VP +Y S ++F ++D N AASLDEAYL++T E G++ E++++LR
Sbjct: 60 FIEVPMRMDRYVEKSRQVMEIFSRFDENMAAASLDEAYLNVTSYMNEHGLTPEEVSQQLR 119
Query: 228 TSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIG 287
V E GLT S G+APN+ LAK+CSD NKPNG+F + + V++F+ LPIRK+ GIG
Sbjct: 120 KMVECETGLTVSTGIAPNKTLAKICSDKNKPNGEFTMQFYKDTVVSFMKDLPIRKVPGIG 179
Query: 288 KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARF--RKS 345
++ E +++ + GI TC ++L L + +D L LG+ S A+ RKS
Sbjct: 180 RINERLVQSL-GIETCGDILNHKVELYLLRKELQSDGLLRANLGIFSNTVAPAKKEDRKS 238
Query: 346 ISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQ 405
+ E+TF D +L KL + + L D+++ GRT+TLK K +FE TR+ ++
Sbjct: 239 VGIEKTFQPIFDTKVLMEKLKILCKELEGDLKRTQFEGRTVTLKYKKDTFENFTRSTSVH 298
Query: 406 KYISSSEDILKHASVLLKAELPVSLRLIGLRVTQF 440
K++S SE+I A LL+ ELP++LRL+G+R+T
Sbjct: 299 KFLSQSEEIWPVAKGLLERELPLTLRLMGVRLTNL 333
>gi|157871750|ref|XP_001684424.1| putative DNA polymerase kappa [Leishmania major strain Friedlin]
gi|68127493|emb|CAJ05435.1| putative DNA polymerase kappa [Leishmania major strain Friedlin]
Length = 598
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 167/450 (37%), Positives = 254/450 (56%), Gaps = 17/450 (3%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVIS 84
+ +KAG+ VDK+ V+ V+ E SKGS +++ E+R E ++K E + + S +
Sbjct: 60 FDASKAGLQQVDKDYVEHVIQEASKGSAFYQKEQRLEETRRRKAEELLEKAKTFDSISAA 119
Query: 85 HYQKV---ADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMIC 141
Q++ D + ELEATRDL R ++H+DMD FYAAVE PSL+GKP VG+ M+
Sbjct: 120 EKQRIKAMVDTMVDELEATRDLRRRYIHIDMDMFYAAVEEKKTPSLRGKPFGVGSQQMLS 179
Query: 142 TANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASL 201
T NY AR++GVR+ MPGFI +KLCPELI VP DF Y + + +YD F++ L
Sbjct: 180 TTNYIARQYGVRSGMPGFIGKKLCPELIIVPNDFPAYQREAARVHSIASRYDAQFVSVGL 239
Query: 202 DEAYLDITEVCRE-RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG 260
DE +D+T+ +E +S +IA + R V+ + LT S G+ P +LAK+ S++NKPNG
Sbjct: 240 DELTMDVTKYLQEFPAVSASDIAHDFRDEVFLKTQLTSSGGIGPTSILAKIASNVNKPNG 299
Query: 261 QF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 319
Q + R V+ ++ +P+RKI GIG E L I+TC +L+ LL +F
Sbjct: 300 QHEITLLTREEVINYVRDIPLRKIPGIGYAQEMTL-GALHIHTCGGLLEHKYLLAYLFRE 358
Query: 320 STADFFLSVGLGLGST-NTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSA 374
T +LSVGLGL T + + + R+S+ E +FS E L+RKL E +
Sbjct: 359 KTLAHYLSVGLGLAETFSLRKHQARQSVGKETSFSEPLPSPEAFTRLFRKLLEQCHVRCV 418
Query: 375 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRL 432
++ L+ R +TL LK +++ +VTL + + + L+ + LL+ L LRL
Sbjct: 419 ---RDHLQPRKMTLVLKYRTYDTEQFSVTLPSHTNDLKVWLEASQKLLEPHLLHYAELRL 475
Query: 433 IGLRVTQFNE-DKVRAPSDPTQKTLTNFMT 461
IG+R+ +F + D A + T+ LT +T
Sbjct: 476 IGVRLQRFTDIDDDHAGLNSTRDALTGALT 505
>gi|134115815|ref|XP_773621.1| hypothetical protein CNBI2350 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256247|gb|EAL18974.1| hypothetical protein CNBI2350 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 598
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 165/430 (38%), Positives = 241/430 (56%), Gaps = 26/430 (6%)
Query: 19 QSYHTVYTNAKAGMDGV--DKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCA 76
+S+ G G+ D+ ++ +++ E SKGSK++ N+ RK+ + +KI R +
Sbjct: 14 RSFERSLAGPSVGKAGITRDQTEINRIIAEASKGSKFYNNQVRKDQELTEKIAWYRNKRD 73
Query: 77 KLT--SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV 134
+L +P + AD+ ++E+EATRDLS++ +HVDMDAFYA+VE +PSLKGK
Sbjct: 74 ELMRMAPR-DQLEDEADRILMEVEATRDLSQTIIHVDMDAFYASVEVQRDPSLKGKAFG- 131
Query: 135 GTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDP 194
YEAR+FGVR+AM GFIA+KLCP +I F YT S ++V +YD
Sbjct: 132 ----------YEARKFGVRSAMAGFIAKKLCPHIILTDLHFDLYTKASKAVKEVLVQYDE 181
Query: 195 NFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSD 254
N M ASLDE YL+IT ++ E+ E+R V E+ LT SAG+A NR+LA
Sbjct: 182 NLMMASLDEGYLNITPYMSTHNMTASEVVTEIRAQVEEKTSLTISAGIAANRMLA----- 236
Query: 255 INKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 314
KPNG F L DR ++ F+ LP+R I G G+VTE L + GI TC ++ +K L
Sbjct: 237 --KPNGHFELAFDRATIVRFMRDLPVRNIPGFGRVTERCL-EGLGIQTCGDIYEKRVDLL 293
Query: 315 AVFSHSTADFFLSVGLGLGSTNTPQARF--RKSISSERTFSVTEDKALLYRKLAEIAEML 372
+ LG+ R R+S+ ERTF D + L +I E L
Sbjct: 294 LMDHWFGFRGLCRAYLGIADNTVAPGRREERRSVGVERTFRDKTDDEDIMATLIDIVEEL 353
Query: 373 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRL 432
D+ + G+T+T+K K ++E +TRA ++ KYISS+ DIL A LLK ELP+ +RL
Sbjct: 354 GKDLDRLQYAGKTVTVKYKLHTYENKTRAKSIPKYISSATDILPIAQELLKKELPLRIRL 413
Query: 433 IGLRVTQFNE 442
+G+R++ +
Sbjct: 414 LGVRLSTLKD 423
>gi|401424998|ref|XP_003876984.1| putative DNA polymerase IV [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322493228|emb|CBZ28513.1| putative DNA polymerase IV [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 598
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 165/450 (36%), Positives = 253/450 (56%), Gaps = 17/450 (3%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVIS 84
+ +KAG+ VDK+ V+ V+ E SKGS +++ E+R E ++K E ++ + S +
Sbjct: 60 FDASKAGLQQVDKDYVEHVIQEASKGSAFYQKEQRLEETRRRKAEELQEKAKTFDSISAA 119
Query: 85 HYQKV---ADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMIC 141
QK+ D + ELEATRDL R ++H+DMD FYAAVE PSL+GKP VG+ M+
Sbjct: 120 EKQKIKAMVDAMVDELEATRDLRRRYIHIDMDMFYAAVEEKKTPSLRGKPFGVGSQQMLS 179
Query: 142 TANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASL 201
T NY AR++GVR+ MPGFI +KLCPELI VP DF Y + + +YD F++ L
Sbjct: 180 TTNYIARQYGVRSGMPGFIGKKLCPELIIVPNDFPAYQREAARVHSIASRYDAQFVSVGL 239
Query: 202 DEAYLDITEVCRE-RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG 260
DE +D+T+ +E +S +IA + R V+ + LT S G+ P +LAK+ S++NKPNG
Sbjct: 240 DELTMDVTKYLQEFPAVSASDIAHDFRNEVFIKTQLTSSGGIGPTSILAKIASNVNKPNG 299
Query: 261 QF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 319
Q + R V+ ++ +P+RKI GIG E L I+TC +L+ LL +F
Sbjct: 300 QHEITLLTREEVINYVRDIPLRKIPGIGYAQEMTL-GALHIHTCGGLLEHKYLLAYLFRE 358
Query: 320 STADFFLSVGLGLGST-NTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSA 374
T +LSVGLGL T + + + R+S+ E +FS E L+RKL E +
Sbjct: 359 KTLAHYLSVGLGLAETFSLRKHQARQSVGKETSFSEPLPSPEAFTRLFRKLLEQCHVRCV 418
Query: 375 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRL 432
++ L+ R +TL LK +++ +VTL + + + L+ + LL+ L RL
Sbjct: 419 ---RDHLQPRKMTLVLKYRTYDTEQFSVTLSSHTNDLKVWLEASQKLLEPHLLHYAEFRL 475
Query: 433 IGLRVTQFNE-DKVRAPSDPTQKTLTNFMT 461
+G+R+ +F + D + T+ LT +T
Sbjct: 476 VGVRLQRFTDTDDDHTGLNSTRDALTGALT 505
>gi|145518886|ref|XP_001445315.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412759|emb|CAK77918.1| unnamed protein product [Paramecium tetraurelia]
Length = 591
Score = 278 bits (712), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 171/506 (33%), Positives = 270/506 (53%), Gaps = 28/506 (5%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKL--TSPVISHY 86
KAG++G D+ +++ + + ++GS+Y++ ++ K + K+ M+
Sbjct: 12 KAGVEGADQ--IKQTIDDATRGSEYYKRQQEKRQQVLSKVSKMQVELENYHKNEQKKKET 69
Query: 87 QKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYE 146
+++ ++ E + D R W H DMD FY A E L P LK KP+AVG S+I TANY
Sbjct: 70 KEIIQNKVKEFQINTD--RIWAHFDMDMFYVACELLDKPELKDKPVAVG-QSIISTANYV 126
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
AR++GVR+AMPGF+A+KLCP++IFVP F KY S++ + KYD N + LDEA L
Sbjct: 127 ARKYGVRSAMPGFVAKKLCPDIIFVPCHFEKYKSVSNIFMTILKKYDDNLESMGLDEANL 186
Query: 207 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 266
D+TE + + E +R ++ LT S GV PN+++AK+ S+INKPNG V+
Sbjct: 187 DLTEYINNSQVDPATLCENIRKDIFIATQLTASCGVGPNKMIAKLASEINKPNGLHVVEQ 246
Query: 267 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 326
AV+ F+ LP+RKI GIG +TE IL + NTC+++ + L +F+ T ++
Sbjct: 247 SPTAVLGFLEKLPVRKIPGIGNITEQILSGL-NFNTCKDVRDRADELYIIFTPKTFEYIF 305
Query: 327 SVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
G+ + + SIS +RTFS + K+ IAE L+ DMQ+E G L
Sbjct: 306 YSCWGVARNCHVEFEDQLSISCQRTFSSISTQKEFEDKVDYIAEKLAEDMQQEEKVGNHL 365
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQF-NEDK 444
TL +KT FE+R +++ L +Y + ++ I + LLK +L +RL+GL++ NE +
Sbjct: 366 TLIIKTCKFEIRNKSLQLNQYTNQAKQIAIYGKQLLKIMQLDEPIRLLGLKMGSLANEKQ 425
Query: 445 VRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNYE 504
++ S T KK NSL + I + + K +S D N +
Sbjct: 426 MQKQSIST------------YFKKQFDKSNSLENQIASN--LGSKSHQISEDGDSINKVQ 471
Query: 505 FGDPVCDNSLPDL--NDENCSFSNKI 528
P + S P++ DE + SN++
Sbjct: 472 LQQP--EQSKPEIISEDEASNISNQL 495
>gi|398018133|ref|XP_003862253.1| DNA polymerase kappa, putative [Leishmania donovani]
gi|322500482|emb|CBZ35559.1| DNA polymerase kappa, putative [Leishmania donovani]
Length = 598
Score = 278 bits (712), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 166/450 (36%), Positives = 254/450 (56%), Gaps = 17/450 (3%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVIS 84
+ +KAG+ VDK+ V+ V+ E SKGS +++ E+R E ++K E ++ + S +
Sbjct: 60 FDASKAGLQQVDKDYVEHVIQEASKGSAFYQKEQRLEETRRRKAEELQEKAKTFDSISAA 119
Query: 85 HYQKV---ADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMIC 141
Q++ D + ELEATRDL R ++H+DMD FYAAVE PSL+GKP VG+ M+
Sbjct: 120 EKQRIKAMVDAMVDELEATRDLRRRYIHIDMDMFYAAVEEKKTPSLRGKPFGVGSQQMLS 179
Query: 142 TANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASL 201
T NY AR++GVR+ MPGFI +KLCPELI VP DF Y + + +YD F++ L
Sbjct: 180 TTNYIARQYGVRSGMPGFIGKKLCPELIIVPNDFPAYQREAARVHSIASRYDAQFVSVGL 239
Query: 202 DEAYLDITEVCRE-RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG 260
DE +D+T+ +E +S +IA + R V+ + LT S G+ P +LAK+ S++NKPNG
Sbjct: 240 DELTMDVTKYLQEFPAVSASDIAHDFRDEVFLKTQLTSSGGIGPTSILAKIASNVNKPNG 299
Query: 261 QF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 319
Q + R V+ ++ +P+RKI GIG E L I+TC +L+ LL +F
Sbjct: 300 QHEITLLTREEVINYVRDIPLRKIPGIGYAQEMTL-GALHIHTCGGLLEHKYLLAYLFRE 358
Query: 320 STADFFLSVGLGLGST-NTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSA 374
T +LSVGLGL T + + + R+S+ E +FS E L+RKL E +
Sbjct: 359 KTLAHYLSVGLGLAETFSLRKHQARQSVGKETSFSEPLPSPEAFTRLFRKLLEQCHVRCV 418
Query: 375 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRL 432
++ L+ R +TL LK +++ +VTL + + + L+ + LL+ L RL
Sbjct: 419 ---RDHLQPRKMTLVLKYRTYDTEQFSVTLPSHTNDLKVWLEASQKLLEPHLLHYAEFRL 475
Query: 433 IGLRVTQFNE-DKVRAPSDPTQKTLTNFMT 461
IG+R+ +F + D A + T+ LT +T
Sbjct: 476 IGVRLQRFTDTDDDHAGLNSTRDALTGALT 505
>gi|146092011|ref|XP_001470183.1| putative DNA polymerase IV [Leishmania infantum JPCM5]
gi|134084977|emb|CAM69375.1| putative DNA polymerase IV [Leishmania infantum JPCM5]
Length = 598
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 165/450 (36%), Positives = 253/450 (56%), Gaps = 17/450 (3%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVIS 84
+ +KAG+ VDK+ V+ V+ E SKGS +++ E+R E ++K E ++ + S +
Sbjct: 60 FDASKAGLQQVDKDYVEHVIQEASKGSAFYQKEQRLEETRRRKAEELQEKAKTFDSISAA 119
Query: 85 HYQKV---ADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMIC 141
Q++ D + ELEATRDL R ++H+DMD FYAAVE PSL+GKP VG+ M+
Sbjct: 120 EKQRIKAMVDAMVDELEATRDLRRRYIHIDMDMFYAAVEEKKTPSLRGKPFGVGSQQMLS 179
Query: 142 TANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASL 201
T NY AR++GVR+ MPGFI +KLCPELI VP DF Y + + +YD F++ L
Sbjct: 180 TTNYIARQYGVRSGMPGFIGKKLCPELIIVPNDFPAYQREAARVHSIASRYDAQFVSVGL 239
Query: 202 DEAYLDITEVCRE-RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG 260
DE +D+T+ +E +S +IA + R V+ + LT S G+ P +LAK+ S++NKPNG
Sbjct: 240 DELTMDVTKYLQEFPAVSASDIAHDFRDEVFLKTQLTSSGGIGPTSILAKIASNVNKPNG 299
Query: 261 QF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 319
Q + R V+ ++ +P+RKI GIG E L I+TC +L+ LL +F
Sbjct: 300 QHEITLLTREEVINYVRDIPLRKIPGIGYAQEMTL-GALHIHTCGGLLEHKYLLAYLFRE 358
Query: 320 STADFFLSVGLGLGST-NTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSA 374
T +LSVGLGL T + + + R+S+ E +FS E L+RKL E +
Sbjct: 359 KTLAHYLSVGLGLAETFSLRKHQARQSVGKETSFSEPLPSPEAFTRLFRKLLEQCHVRCV 418
Query: 375 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRL 432
++ L+ R +TL LK +++ +VTL + + + L+ + LL+ L RL
Sbjct: 419 ---RDHLQPRKMTLVLKYRTYDTEQFSVTLPSHTNDLKVWLEASQKLLEPHLLHYAEFRL 475
Query: 433 IGLRVTQFNE-DKVRAPSDPTQKTLTNFMT 461
IG+R+ +F + D A + + LT +T
Sbjct: 476 IGVRLQRFTDTDDDHAGLNSARDALTGALT 505
>gi|56160414|gb|AAV80821.1| polymerase kappa isoform 5 [Mus musculus]
Length = 275
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/254 (52%), Positives = 179/254 (70%), Gaps = 5/254 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDR 268
T+ +ER + E + + + G G+APN +LAKVCSD NKPNGQ+ + R
Sbjct: 204 TQHLQER-----QDWPEDKRRYFIKMGNYLKIGIAPNTMLAKVCSDKNKPNGQYQILPSR 258
Query: 269 MAVMTFISSLPIRK 282
AVM FI LPIRK
Sbjct: 259 SAVMDFIKDLPIRK 272
>gi|403377409|gb|EJY88700.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 759
Score = 276 bits (705), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 162/462 (35%), Positives = 259/462 (56%), Gaps = 15/462 (3%)
Query: 9 ASSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKI 68
+ +E+P Q Y +V+ KAGM VDKE+V K++ E SK S+++ +EE+K ++++
Sbjct: 93 SDKNEDPEA-QYYLSVH---KAGMGKVDKERVHKIIQESSKSSEFYRSEEKKLVEVKERC 148
Query: 69 EHMRARCAKLTSPVISHYQKVADKRILE--LEATRDLSRSWLHVDMDAFYAAVETLSNPS 126
+ + ++ I + + + + L+ R L R+W+ VDMDAFYAAVE +P+
Sbjct: 149 RRYQEKVDQIKKDPIQFERMLIEVKTKTEMLKKERCLRRTWIQVDMDAFYAAVEIRDDPN 208
Query: 127 LKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTR 186
L+ P+AV +MI T NY+AR FGVR+ +P FI ++LCPE+ + +F KY SD +
Sbjct: 209 LEKIPIAVAKKNMIMTTNYKAREFGVRSGVPSFIGKRLCPEMKLIEPNFDKYRKASDEFK 268
Query: 187 KVFCKYDPNFMAASLDEAYLDITEVC---RERGISG-IEIAEELRTSVYEEAGLTCSAGV 242
V KYD + A LDE +D+TE R+ G I +A ++R + ++ +T S G+
Sbjct: 269 SVLYKYDNDLEAVGLDEVNMDVTEYLIQHRQDNQEGRINLATKIRKEIQQQTRMTASCGI 328
Query: 243 APNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT 302
A N++LAK+CSD+NKPNGQ L N ++ F+ LP+RK+ G+GKV E IL + I T
Sbjct: 329 ACNKMLAKICSDMNKPNGQTYLHNSERDILEFMKELPVRKLVGVGKVNEQILLGM-NIKT 387
Query: 303 CEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY 362
C +++ K + F+ + DF + +G+ +A +KS++ +TF V + +
Sbjct: 388 CSDVIDKAVDIYINFTENAFDFLVKSAIGIARNTHEEAGIKKSLNISQTFQVLSEFIQIK 447
Query: 363 RKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 422
KL E+ E L + E L GRTLTL+ K F+ + R+ T +YI ED+ K A LL
Sbjct: 448 AKLEELCEELEQRAKHEKLSGRTLTLEFKNDKFKNKQRSYTQNQYIWKKEDLFKIALSLL 507
Query: 423 KAELPVS-LRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSG 463
+ P+ R I +++ DK + + T+ N T G
Sbjct: 508 QDAWPLEPTRQISVKLLNLKNDKGQLSATATE---VNHTTGG 546
>gi|403161534|ref|XP_003321856.2| hypothetical protein PGTG_03393 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171309|gb|EFP77437.2| hypothetical protein PGTG_03393 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 562
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 159/420 (37%), Positives = 235/420 (55%), Gaps = 56/420 (13%)
Query: 97 LEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGV---- 152
LE TR L + + VD DAF+ +VE + NP+LKGK AVG+ ++ TA+YEAR++G
Sbjct: 20 LERTRILDQIIVCVDADAFFCSVEEMYNPTLKGKAFAVGS-GVLTTASYEARKWGCVCLL 78
Query: 153 ----------------------RAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFC 190
R+AM G+IA KLCP LIFV DF KY SD K+
Sbjct: 79 LTDLGSTRSLYLTNFFYFQLNQRSAMAGYIATKLCPRLIFVEPDFKKYNAASDSIMKILR 138
Query: 191 KYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAK 250
+YDPN SLDE ++++T CR+ +S E +R V ++ GLT SAG+ PN +AK
Sbjct: 139 QYDPNLAPNSLDECFMNLTAYCRDHDLSAAEATSRMRQHVLKDTGLTVSAGIGPNVTIAK 198
Query: 251 VCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG 310
+ +D+NKPNGQF P R M F+ LP+RK+ GIG+VTE L +V G+ C ++ ++
Sbjct: 199 IAADLNKPNGQFECPPTRDDAMKFMKDLPVRKVPGIGRVTERWL-EVLGVKKCGDIWEQR 257
Query: 311 SLLCAVFSHSTADFFLSVGLGLGSTNT--PQARFRKSISSERTFSVTEDKALLYRKLAEI 368
S L + S + D LGLG T+ Q R+S+ E +F K ++KL E+
Sbjct: 258 SKLLLMKSEVSFDLLSRAYLGLGQTDIKPSQREDRQSVGCETSFKSLSKKEDFFQKLKEL 317
Query: 369 AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL----QKYISSSEDILKHASVLLKA 424
+E L+ D+ + GRTLTLK+K +FEV +R+VT Q+++SS+ED+ KHA +LL+
Sbjct: 318 SEELAGDLSRLQFAGRTLTLKIKLDTFEVLSRSVTPAILGQRFLSSAEDLYKHAKLLLER 377
Query: 425 ELP--------------------VSLRLIGLRVTQFNEDKVRAPSDPT--QKTLTNFMTS 462
E+ +S+RL+G++V+ + K R P++ QK ++N TS
Sbjct: 378 EIESRHSSFDQGKKVPGCNGARDISIRLLGIKVSHLQDQKNRIPANENSLQKWISNPTTS 437
>gi|403343212|gb|EJY70929.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 839
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/465 (32%), Positives = 257/465 (55%), Gaps = 16/465 (3%)
Query: 19 QSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKL 78
Q T + + G DKE++ K++ + +K S++++ EE K+ +I+ R++ L
Sbjct: 136 QPSTTTGSTGQIGQADPDKERISKIIEQAAKHSEFYQKEENKKKECLLRIKRFRSKIHTL 195
Query: 79 TSPV--ISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT 136
+ V + +++ + +IL R + R+W+++DMD F+AAVE NP LK KP+AV
Sbjct: 196 QANVNQWNITKEMVNGKILSYLQDRFIDRTWIYIDMDMFFAAVEIRDNPELKDKPIAVFN 255
Query: 137 MSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNF 196
MI T NY ARRFGV + MP FI +LCPE+ F+ +++KY + SD + + +YD +
Sbjct: 256 NQMIMTGNYVARRFGVSSGMPKFIGARLCPEITFIEANYSKYKHESDQFKDILAQYDSKY 315
Query: 197 MAASLDEAYLDITEVCRERGISGIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVC 252
+ LDEA +D+TE + + +E + ++R+ +YE LT S G+A N+LLAK+C
Sbjct: 316 ESQGLDEASIDVTEFLKSNNMDNMEGKIFLGSKIRSQIYESTELTASCGIACNKLLAKIC 375
Query: 253 SDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL 312
S + KPNG L D+ + F+++LPI K+ GIGKV + +L + G+ C++M++K +
Sbjct: 376 SGLKKPNGMTYLDFDQDEITNFMNNLPINKLMGIGKVHQRVLTGL-GVKMCQDMIEKATE 434
Query: 313 LCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 372
+ ++ S FF+ LG+ N + +KSI +T +K ++ +A L
Sbjct: 435 IYVNYNESQFQFFMRSALGI-DRNYHEDTVQKSIGVSQTIKPIHEKKEHDDRVRAMAIEL 493
Query: 373 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--L 430
+++ L +TLTL+LKT F ++ R+ YI DI++ + LL PV +
Sbjct: 494 YERLKESELMAKTLTLELKTVRFNIKQRSTNFHTYIWEKSDIVRASEELLNVMWPVGEPV 553
Query: 431 RLIGLRVTQFNEDKV------RAPSDPTQKTLTNFMTSGHASKKI 469
RLIG+R+ Q + + D + +LT+ TS ++ ++
Sbjct: 554 RLIGIRLMQLRTRIIPKTKSGKGRQDISDPSLTHLRTSSNSDERF 598
>gi|71411339|ref|XP_807923.1| DNA polymerase kappa [Trypanosoma cruzi strain CL Brener]
gi|70872023|gb|EAN86072.1| DNA polymerase kappa, putative [Trypanosoma cruzi]
Length = 514
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 170/458 (37%), Positives = 248/458 (54%), Gaps = 37/458 (8%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG+ GV+K +V KV+ SKGS ++ NEER EA Q+K HM L+ + Y
Sbjct: 37 KAGLSGVNKARVNKVIENCSKGSAFYLNEERLEA--QRKKRHMEL----LSKSEVYRYLS 90
Query: 89 VADKRIL---------ELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
A+K+ L ELEA R R+++HVDMD FYAAVE NPSL P+ VGT M
Sbjct: 91 TAEKQALKDKVEMCEVELEAGRHF-RNYVHVDMDMFYAAVEMKKNPSLVDVPLGVGTFDM 149
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T NY ARR+GVR+ MPG+I KLCP L+ VPTDF Y + + R + YDPNF +
Sbjct: 150 LSTTNYVARRYGVRSGMPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNFTSV 209
Query: 200 SLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 258
LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+ KP
Sbjct: 210 GLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYEKP 269
Query: 259 NGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 317
NGQ L R V+ F+ LP+R + GIG V + +LR V GI TC ML+K LLC +F
Sbjct: 270 NGQHELRLRTRQDVVEFMKDLPVRAVPGIGPVQDAVLR-VLGIRTCGCMLRKKGLLCFLF 328
Query: 318 SHSTADFFLSVGLGLGSTNTPQAR---FRKSISSERTFS-VTEDKALLYRKLAEIAEMLS 373
T F+LS GLG+ +N + R +K++ E TF + +A L + + E+ +
Sbjct: 329 PEKTFRFYLSAGLGVVRSNADRMRSDGTQKTVGHEITFKRRLKSEAELKQIVLEVLVAVH 388
Query: 374 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 431
+ + + +TL +K +FE ++TL + + + + LL+ L + R
Sbjct: 389 NTLLLRRVAAQRVTLLMKRRTFENHQFSLTLGEATNDFAALREATRKLLQPHLASFENFR 448
Query: 432 LIGLRVTQFN------------EDKVRAPSDPTQKTLT 457
L+G+R+ + E K R P+ T L+
Sbjct: 449 LVGVRLGKLQSTSRKKLISGVEERKGRPPARITASVLS 486
>gi|407842871|gb|EKG01200.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi]
Length = 514
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 165/430 (38%), Positives = 239/430 (55%), Gaps = 25/430 (5%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG+ GV+K +V KV+ SKGS ++ NEER EA Q+K HM L+ + +
Sbjct: 37 KAGLSGVNKARVNKVIESCSKGSAFYLNEERLEA--QRKKRHMEL----LSKSEVYRHLS 90
Query: 89 VADKRIL---------ELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
ADK+ L ELEA R R+++HVDMD FYAAVE NPSL P+ VGT M
Sbjct: 91 AADKQALKDKVEMCEVELEAGRHF-RNYVHVDMDMFYAAVEMKKNPSLVDVPLGVGTFDM 149
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T NY ARR+GVR+ MPG+I KLCP L+ VPTDF Y + + R + YDPNF +
Sbjct: 150 LSTTNYVARRYGVRSGMPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNFTSV 209
Query: 200 SLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 258
LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+ KP
Sbjct: 210 GLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYEKP 269
Query: 259 NGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 317
NGQ L R VM F+ LP+R + GIG V + +LR V GI TC +L+K LLC +F
Sbjct: 270 NGQHELRLRTRQDVMEFMKDLPVRTVPGIGPVQDAVLR-VLGIRTCGCVLRKKGLLCFLF 328
Query: 318 SHSTADFFLSVGLGLGSTNTPQAR---FRKSISSERTFS-VTEDKALLYRKLAEIAEMLS 373
T F+LS GLG+ +N R +K++ E TF + +A L + + E+ +
Sbjct: 329 PEKTFRFYLSAGLGVVRSNADLMRSDGTQKTMGHEITFKRRLKSEAELRQIVLEVLVAVH 388
Query: 374 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 431
+ + + +TL +K +FE ++TL + + +L+ LL+ L R
Sbjct: 389 NTLLLRRVAAQRVTLLMKRRTFENHQFSLTLGEATNDFAALLEATRKLLQPHLASFDKFR 448
Query: 432 LIGLRVTQFN 441
L+G+R+ +
Sbjct: 449 LVGVRLGKLQ 458
>gi|71415114|ref|XP_809635.1| DNA polymerase kappa [Trypanosoma cruzi strain CL Brener]
gi|70874047|gb|EAN87784.1| DNA polymerase kappa, putative [Trypanosoma cruzi]
Length = 514
Score = 265 bits (676), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 172/458 (37%), Positives = 245/458 (53%), Gaps = 37/458 (8%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG+ GV+K +V KV+ SKGS ++ NEER EA Q+K HM L+ + +
Sbjct: 37 KAGLSGVNKARVNKVIEGCSKGSAFYLNEERLEA--QRKKRHMEL----LSKSEVYRHLS 90
Query: 89 VADKRIL---------ELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
ADK+ L ELEA R R+++HVDMD FYAAVE NPSL P+ VGT M
Sbjct: 91 TADKQALKDKVEMCEVELEAGRHF-RNYVHVDMDMFYAAVEMKKNPSLVDVPLGVGTFDM 149
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T NY ARR+GVR+ MPG+I KLCP L+ VPTDF Y + + R + YDPNF +
Sbjct: 150 LSTTNYVARRYGVRSGMPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNFTSV 209
Query: 200 SLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 258
LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+ KP
Sbjct: 210 GLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYEKP 269
Query: 259 NGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 317
NGQ L R VM F+ LP+R + GIG V + ILR V GI TC ML+K LLC +F
Sbjct: 270 NGQHELRLRTRQDVMEFMKDLPVRTVPGIGPVQDAILR-VLGIRTCGCMLRKKGLLCFLF 328
Query: 318 SHSTADFFLSVGLGLGSTNTPQAR---FRKSISSERTFS-VTEDKALLYRKLAEIAEMLS 373
T F+LS GLG+ +N R +K + E TF + +A L + + E+ +
Sbjct: 329 PEKTFRFYLSAGLGVVRSNADLMRSDGTQKKMGHEITFKRRLKSEAELKQIVLEVLVAVH 388
Query: 374 ADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLR 431
+ + + +TL +K +FE ++TL + + + + LL+ L R
Sbjct: 389 NTLLLRRVAAQRVTLLMKRRTFENHQFSLTLGEATNDFAALREATRKLLQPHLTSFDKFR 448
Query: 432 LIGLRVTQFN------------EDKVRAPSDPTQKTLT 457
L+G+R+ + E K R P+ T L+
Sbjct: 449 LVGVRLGKLQSTSCKKLISGVEERKGRPPARITASVLS 486
>gi|407420127|gb|EKF38477.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi marinkellei]
Length = 609
Score = 262 bits (670), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 164/480 (34%), Positives = 246/480 (51%), Gaps = 27/480 (5%)
Query: 16 RPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARC 75
+P + + + KAG+D D K ++ E SKGS Y+ NE RK Q+ + +R +
Sbjct: 62 QPLPEFQLQFDSNKAGLDSADANKTTAIIQEASKGSSYYINERRKAEIRQKHVLQLRQKS 121
Query: 76 AKLT--------SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSL 127
A+ T + +++ + ELEA R R+++HVDMD FYAAVE NPSL
Sbjct: 122 AQFTQYMNGEKNAACRKQWERKVSQIEQELEAGRHF-RNYVHVDMDMFYAAVEMKKNPSL 180
Query: 128 KGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRK 187
P+ VGT M+ T NY ARR+GVR+ MPG+I KLCP L+ VPTDF Y + + R
Sbjct: 181 VNVPLGVGTFDMLSTTNYVARRYGVRSGMPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRG 240
Query: 188 VFCKYDPNFMAASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNR 246
+ YDPNF + LDE +++T ++ G++ ++A E R V+ E LT SAG+ P
Sbjct: 241 IAAAYDPNFTSVGLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTA 300
Query: 247 LLAKVCSDINKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEE 305
LAK+ S+ KPNGQ L R VM F+ +LP+R + GIG+ TE IL + GIN E
Sbjct: 301 TLAKIASNYEKPNGQHELRLRTRQDVMEFMKNLPVRTVPGIGRSTESILHGL-GINLLGE 359
Query: 306 MLQKGSLLCAVFSHSTADFFLSVGLGL----------GSTNTPQARFRKSISSERTFSVT 355
+ + LC + + T F L +G+ GS T +A RK+I ERTF
Sbjct: 360 IYDRRVELCYILTEKTFCFLLGSSMGVVRWMDTDTSDGSERTSEAE-RKTIGMERTFRNL 418
Query: 356 EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 415
+ L + + +++ L R + LK K ASF+V + L ++ E +
Sbjct: 419 SSRLELQQIAHSALQTAHRRLEENELFCRQIVLKTKRASFQVHQYSKNLPQHSDDLETLR 478
Query: 416 KHASVLLK--AELPVSLRLIGLRVTQF--NEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 471
+ LL A+ LRL+G+R+ + Q+TL + + ++S + VG
Sbjct: 479 RGVDELLLRIADQYAFLRLVGVRLADIITKSEYEALQRGGLQRTLLQYCSRSNSSYRAVG 538
>gi|403376484|gb|EJY88222.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 1212
Score = 261 bits (667), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 151/453 (33%), Positives = 252/453 (55%), Gaps = 21/453 (4%)
Query: 28 AKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKL--TSPVISH 85
AKAGM+ ++ KV +++ E +Y+ +E K ++ K+ +A+ + + +
Sbjct: 464 AKAGMENFNENKVDQMLKESITNKQYYITQEEKIEKVEAKVAAYKAKIQQYRQNTQLWEK 523
Query: 86 YQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANY 145
Q+ +R+ R+++R+WLHVDMD FYAA+E P LK KP+AVG SMI T NY
Sbjct: 524 TQQEVKRRLEIYRKERNITRTWLHVDMDMFYAAIEIRDRPDLKEKPVAVGDYSMIQTTNY 583
Query: 146 EARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCK-YDPNFMAASLDEA 204
AR FGVR+AMPGF+ +KLCP L+F+ + KY SD K + YD + LDEA
Sbjct: 584 VAREFGVRSAMPGFMGKKLCPTLVFIRPNKDKYRKVSDTEFKAILREYDDKLESIGLDEA 643
Query: 205 YLDITEVCRERGI----SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG 260
LDIT+ ++ G+ I +AE++R + + +T S G+A N++LAK+CS++NKPNG
Sbjct: 644 NLDITDFLQKNGMDCPEGRIFVAEKIREQIKTKMQMTSSVGIASNKMLAKICSELNKPNG 703
Query: 261 QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHS 320
Q L D + F+ + +R + G+G+V E +L + INTC+E+L+K + + F+ +
Sbjct: 704 QSYLAFDADKIEEFMRAKKVRDVPGVGRVHEQVLIGL-DINTCDEILKKAADIYINFTET 762
Query: 321 TADFFLSVGLGLG--STNTPQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ 377
+F + +G+ S + ++SIS ++F V K+ ++A L+
Sbjct: 763 AFEFLVKAAMGISRCSHDDDSGNLAKRSISFSKSFKVISRFEQFKEKMDKLATNLAEKCN 822
Query: 378 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLR 436
+ + RTL+++ KT F ++ R++T ++I +DI+++A+ LL A PV R++ L+
Sbjct: 823 EMKILARTLSIEFKTEKFMLKQRSLTFNQHICHKDDIMRYANELLNAVWPVEPCRMMMLK 882
Query: 437 VTQFNEDKVRAPSDPTQ------KTLTNFMTSG 463
+ + R D T+ K L FM G
Sbjct: 883 LNNL---RNRTEKDSTESLLKDVKNLQFFMGKG 912
>gi|154413235|ref|XP_001579648.1| ImpB/MucB/SamB family protein [Trichomonas vaginalis G3]
gi|121913857|gb|EAY18662.1| ImpB/MucB/SamB family protein [Trichomonas vaginalis G3]
Length = 592
Score = 258 bits (658), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 152/430 (35%), Positives = 243/430 (56%), Gaps = 10/430 (2%)
Query: 24 VYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVI 83
VY KAG+ E+V++ + +SKGSKYFE ++++ ++I M+ + K TS
Sbjct: 6 VYDENKAGL-AAPAEEVREKIMSISKGSKYFEQQQKRSTRADKQILQMKNKL-KHTSESE 63
Query: 84 SHYQKVADKRILE-LEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSM 139
H+ ++ + L+ LE RD S+++LH D+D+F+A+ E L +PSL G AVG +
Sbjct: 64 RHFAEMQVENYLQNLEKLRDYSKTYLHADLDSFFASCEALRDPSLVGTAFAVGGEIKHGV 123
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T +YEAR+FGVR+ M FIA +LCP L V + + Y +YS + RK+F KYD ++++
Sbjct: 124 LSTTSYEARKFGVRSGMAVFIALQLCPHLKIVESHYELYKHYSSIVRKIFEKYDSHYISF 183
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
LDEA LD++E + ++IA+ ++ V+E+ LT S G+A LAK+ SD+NKPN
Sbjct: 184 GLDEASLDLSEHVKLDYEKAMDIAKNIQKEVFEQTKLTISCGIAITPQLAKIASDVNKPN 243
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH 319
G F + +DR + + FIS LPIRKI GIG V E +L + GI T ++++ K + L
Sbjct: 244 GIFEIKHDRESTLDFISKLPIRKIPGIGGVAEQLLHGI-GITTMKDVMDKKTDLWICMRP 302
Query: 320 STADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE 379
F S LG+ R ++SIS ERTF T D+ + + ++ + +Q+
Sbjct: 303 LFCQFIFSACLGINRQTFGVTRHQQSISKERTFDNTNDRVFMEEIIEKLCMEVCKLLQEM 362
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLIGLR 436
+ R +T+K K +SF+ TR ++ + DI +L EL V RL+G+R
Sbjct: 363 NVLCRNVTVKFKDSSFQTITRCLSFDHDTNKIFDIFCACVKILNDELRSRYVKYRLLGVR 422
Query: 437 VTQFNEDKVR 446
Q + + +
Sbjct: 423 CGQLSTPRAK 432
>gi|71415110|ref|XP_809633.1| DNA polymerase kappa [Trypanosoma cruzi strain CL Brener]
gi|70874045|gb|EAN87782.1| DNA polymerase kappa, putative [Trypanosoma cruzi]
Length = 604
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 157/444 (35%), Positives = 228/444 (51%), Gaps = 25/444 (5%)
Query: 16 RPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARC 75
+P + + + KAG+D D K ++ E SKGS Y+ NE RK Q+ + +R
Sbjct: 61 QPLPEFQLQFDSNKAGLDSADANKTTAIIQEASKGSNYYINERRKAEIRQKHVLQLRQNS 120
Query: 76 AKLT--------SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSL 127
A+ + +++ + ELEA R R+++HVDMD FYAAVE NPSL
Sbjct: 121 AQFAQYMSGEKNAACRKQWERKVSQIEQELEAGRHF-RNYVHVDMDMFYAAVEMKKNPSL 179
Query: 128 KGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRK 187
P+ VGT M+ T NY ARR+GVR+ MPG+I KLCP L+ VPTD Y + + R
Sbjct: 180 VDVPLGVGTFDMLSTTNYVARRYGVRSGMPGYIGVKLCPSLVIVPTDLDAYHAEAAVVRG 239
Query: 188 VFCKYDPNFMAASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNR 246
+ YDPNF + LDE +++T ++ G++ ++A E R V+ E LT SAG+ P
Sbjct: 240 IAAAYDPNFTSVGLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTA 299
Query: 247 LLAKVCSDINKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEE 305
LAK+ S+ KPNGQ L R VM F+ LP+R + GIG+ TE IL GIN E
Sbjct: 300 TLAKIASNYEKPNGQHELRLRTRQDVMEFMKDLPVRTVPGIGRSTESILHG-LGINLLGE 358
Query: 306 MLQKGSLLCAVFSHSTADFFLSVGLGL----------GSTNTPQARFRKSISSERTFSVT 355
+ + LC + + T F L +G+ GS T +A RKSI ERTF
Sbjct: 359 IYDRRVELCYILTEKTFCFLLGSSMGVVRWMDADTNDGSERTTEAE-RKSIGMERTFRNL 417
Query: 356 EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 415
+ L + + +++ L R + LK K ASF+V + L ++ E +
Sbjct: 418 SSRLELQQIAHSALQTAHRRLEENELFCRQIVLKTKRASFQVHQYSKNLPQHSDDLETLR 477
Query: 416 KHASVLLK--AELPVSLRLIGLRV 437
+ LL A+ LRL+G+R+
Sbjct: 478 RGVDELLLRIADQYAFLRLVGVRL 501
>gi|407420129|gb|EKF38479.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi marinkellei]
Length = 513
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 168/437 (38%), Positives = 236/437 (54%), Gaps = 39/437 (8%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG+ GV+K +V KV+ SKGS + NEER EA Q+K HM L+ + +
Sbjct: 36 KAGLSGVNKARVNKVIENCSKGSAFSLNEERLEA--QRKERHMEL----LSKSEVYRHLS 89
Query: 89 VADKRIL---------ELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
A+K+ L ELEA R R+++HVDMD FYAAVE NPSL P+ VGT M
Sbjct: 90 TAEKQTLRDKVETCEVELEAGRHF-RNYVHVDMDMFYAAVEMKKNPSLVNVPLGVGTFDM 148
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T NY ARR+GVR+ MPG+I KLCP L+ VPTDF Y + + R + YDPNF +
Sbjct: 149 LSTTNYVARRYGVRSGMPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNFTSV 208
Query: 200 SLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKP 258
LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S+ KP
Sbjct: 209 GLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIASNYEKP 268
Query: 259 NGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 317
NGQ L R VM F+ +LP+R + GIG V E LR + GI TC +L+K LL +F
Sbjct: 269 NGQHELRLRTRQDVMEFMKNLPVRTVPGIGPVQEAALR-ILGIRTCGCLLRKKVLLFFLF 327
Query: 318 SHSTADFFLSVGLGLGSTN---TPQARFRKSISSERTF-----SVTEDKALLYRKLAEIA 369
T F+LS GLG+ N T R +K++ E TF S E K ++ + L +
Sbjct: 328 PEKTFRFYLSAGLGVVRNNADRTRSDRTQKTMGHEITFKRRLKSEAELKQIVLKVLVAVH 387
Query: 370 EML---SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 426
L A Q+ +TL +K +FE +TL + + + K LL+ L
Sbjct: 388 TTLLLRRAAAQR-------VTLHMKRRTFENHQFTLTLGEATNDFAALRKATWKLLQPHL 440
Query: 427 PV--SLRLIGLRVTQFN 441
+ RL+G+R+ +
Sbjct: 441 ASFDNFRLVGVRLGKLQ 457
>gi|407853254|gb|EKG06320.1| DNA polymerase kappa, putative,DNA polymerase IV, putative
[Trypanosoma cruzi]
Length = 604
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 159/445 (35%), Positives = 230/445 (51%), Gaps = 27/445 (6%)
Query: 16 RPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARC 75
+P + + + KAG+D D K ++ E SKGS Y+ NE RK Q+ + +R +
Sbjct: 61 QPLPEFQLQFDSNKAGLDSADANKTTAIIQEASKGSSYYINERRKAEIRQKHVLQLRQKS 120
Query: 76 AKLTSPVISHYQKVADKRILE---------LEATRDLSRSWLHVDMDAFYAAVETLSNPS 126
A+ + +S + A +R E LEA R R+++HVDMD FYAAVE NPS
Sbjct: 121 AQF-AQYMSGEKNAACRRQWERKVSQIEQELEAGRHF-RNYVHVDMDMFYAAVEMKKNPS 178
Query: 127 LKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTR 186
L P+ VGT M+ T NY ARR+GVR+ MPG+I KLCP L+ VPTDF Y + + R
Sbjct: 179 LVDVPLGVGTFDMLSTTNYVARRYGVRSGMPGYIGVKLCPSLVIVPTDFDAYHAEAAVVR 238
Query: 187 KVFCKYDPNFMAASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPN 245
+ YDPNF + LDE +++T ++ G++ +A E R V+ E LT SAG+ P
Sbjct: 239 GIAAAYDPNFTSVGLDELTMEVTAYLQQHPGMTAGNVASEFRARVFAETQLTASAGIGPT 298
Query: 246 RLLAKVCSDINKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCE 304
LAK+ S+ KPNGQ L R VM F+ LP+R + GIG+ TE IL + GIN
Sbjct: 299 ATLAKIASNYEKPNGQHDLRLRTRQDVMEFMKDLPVRTVPGIGRSTESILHGL-GINLLG 357
Query: 305 EMLQKGSLLCAVFSHSTADFFLSVGLGL----------GSTNTPQARFRKSISSERTFSV 354
E+ + LC + + T F L +G+ G T +A RKSI ERTF
Sbjct: 358 EIYDRRVELCYILTEKTFCFLLGSSMGVVRWMDADTNDGGERTTEAE-RKSIGMERTFRN 416
Query: 355 TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDI 414
+ L + + +++ R + LK K ASF+V + L ++ E +
Sbjct: 417 LSSRLELQQIAHSALQTAHRRLEENEFFCRQIVLKTKRASFQVHQYSKNLPQHSDDLETL 476
Query: 415 LKHASVLLK--AELPVSLRLIGLRV 437
+ LL A+ LRL+G+R+
Sbjct: 477 RRGVDELLLRIADQYAFLRLVGVRL 501
>gi|71411335|ref|XP_807921.1| DNA polymerase kappa [Trypanosoma cruzi strain CL Brener]
gi|70872021|gb|EAN86070.1| DNA polymerase kappa, putative [Trypanosoma cruzi]
Length = 597
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 155/439 (35%), Positives = 226/439 (51%), Gaps = 25/439 (5%)
Query: 21 YHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLT- 79
+ + + KAG+D D K ++ E SKGS Y+ NE RK Q+ + +R + A+
Sbjct: 59 FQLQFDSNKAGLDLADANKTTAIIQEASKGSSYYINERRKAEIRQKHVLQLRQKSAQFAQ 118
Query: 80 -------SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPM 132
+ +++ + ELEA R R+++HVDMD FYAAVE NPSL P+
Sbjct: 119 YMSGEKNAACRKQWERKVSQIEQELEAGRHF-RNYVHVDMDMFYAAVEMKKNPSLVDVPL 177
Query: 133 AVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKY 192
VGT M+ T NY ARR+GVR+ MPG+I KLCP L+ VPTDF Y + + R + Y
Sbjct: 178 GVGTFDMLSTTNYVARRYGVRSGMPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAY 237
Query: 193 DPNFMAASLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKV 251
DPNF + LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+
Sbjct: 238 DPNFTSVGLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKI 297
Query: 252 CSDINKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG 310
S+ KPNGQ L R VM F+ LP+R + GIG+ TE IL IN E+ +
Sbjct: 298 ASNYEKPNGQHELRLRTREDVMEFMKDLPVRTVPGIGRSTESILHG-LDINLLGEIYDRR 356
Query: 311 SLLCAVFSHSTADFFLSVGLGL----------GSTNTPQARFRKSISSERTFSVTEDKAL 360
LC + + T F L +G+ G T +A RKSI ERTF +
Sbjct: 357 VELCYILTEKTFCFLLGSSMGVVRWMDADTNDGIERTTEAE-RKSIGMERTFRNLSSRLE 415
Query: 361 LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV 420
L + + +++ L R + LK K ASF+V + L ++ E + +
Sbjct: 416 LQQIAHSALQTAHRRLEENELVCRQIVLKTKRASFQVHQYSKNLPQHSDDLETLRRGVDE 475
Query: 421 LLK--AELPVSLRLIGLRV 437
LL A+ LRL+G+R+
Sbjct: 476 LLLRIADQYAFLRLVGVRL 494
>gi|261334854|emb|CBH17848.1| DNA polymerase IV, putative [Trypanosoma brucei gambiense DAL972]
Length = 570
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 157/452 (34%), Positives = 244/452 (53%), Gaps = 29/452 (6%)
Query: 10 SSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIE 69
S+S P +Q T+ N KAGM VDKE+V V++EMS GS Y N++R +++++
Sbjct: 34 SASRQPTAFQ--LTLDCN-KAGMGNVDKERVAAVIHEMSAGSGYLCNQQRLSKGREKQLQ 90
Query: 70 HMRARCAKLTSPVI--------SHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVET 121
++ + + T + + ++ K ELEATR L +++H+DMD FYAAVE
Sbjct: 91 ELKRKSSLFTQLLGGERNAAQRTQWEVKVSKIEQELEATRRLG-TYIHLDMDMFYAAVEI 149
Query: 122 LSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYY 181
+P P+AVGT +M+ TANY AR GVR MPG+I K+CP L+ +P DF Y
Sbjct: 150 KKHPEYANVPLAVGTKTMLTTANYVARGCGVRPGMPGYIGLKICPNLLILPPDFDAYNEE 209
Query: 182 SDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRERGISGIE-IAEELRTSVYEEAGLTCS 239
S+ R++ +YDPN+++ LDE L+++ + R G E +A ELR V+ E LT S
Sbjct: 210 SNTVRRIVAEYDPNYISFGLDELTLEVSAYIERFEGTKTAEDVASELRVRVFGETKLTAS 269
Query: 240 AGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVF 298
AG+ P LAK+ S+INKPNGQ L + R VMT++ L +R + GIGK E +L+
Sbjct: 270 AGIGPTAALAKIASNINKPNGQHDLNLHTRQDVMTYVRDLGLRSVPGIGKAMEALLKG-L 328
Query: 299 GINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----------GSTNTPQARFRKSIS 347
GI T ++ + LC +F+ T F L +G+ GS + RKS+
Sbjct: 329 GITTLSDIYNRRVELCYIFTEKTYRFLLGASIGIMQWPDACNIPGGSVDDGTGVGRKSVG 388
Query: 348 SERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKY 407
SERTF + + K L + I +++K L R ++L+++ A++ R + L ++
Sbjct: 389 SERTFKILQSKEELQEIVDFIFNSSYDELKKHELMCRQVSLRIRWATYRSRQYTMNLAQH 448
Query: 408 ISSSEDILKHASVLL--KAELPVSLRLIGLRV 437
S + + LL A + L+G+R+
Sbjct: 449 SDDSATLRRAVDGLLLPHAAKYSDMSLLGMRL 480
>gi|238506557|ref|XP_002384480.1| DNA-directed polymerase kappa, putative [Aspergillus flavus
NRRL3357]
gi|220689193|gb|EED45544.1| DNA-directed polymerase kappa, putative [Aspergillus flavus
NRRL3357]
Length = 573
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 156/420 (37%), Positives = 233/420 (55%), Gaps = 43/420 (10%)
Query: 29 KAGMDGVDKEKVQ--KVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHY 86
KAG D VD++K++ +++Y SKGSK+F +E+ ++ + +KIE + A+L + +SH
Sbjct: 37 KAGQDAVDQQKIKVSEIIYNASKGSKFFNHEQNRDRILTEKIERILKEKARLENLDLSHD 96
Query: 87 QKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYE 146
+ AD+ + ELE +RDLS+ +HVD DAF+AAVE L P LK P A
Sbjct: 97 LRRADQLLDELELSRDLSQYIVHVDCDAFFAAVEELDRPELKTVPFA------------- 143
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
LI +P + KY+ + R +F +YDP F +AS+DEAYL
Sbjct: 144 ---------------------LICLPINHQKYSAKAQEIRAIFAQYDPLFESASIDEAYL 182
Query: 207 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 266
+IT C E I + +R V E+ ++ SAG+A N +AK+ S+ NKPNGQF +PN
Sbjct: 183 NITAYCTENQIDPEDAVNRMRAEVLEQTKISVSAGIAANAKIAKIASNRNKPNGQFRVPN 242
Query: 267 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 326
DR A++ F+ LP+RK+ G+G+V E L D GI TC ++ + +LL +F F
Sbjct: 243 DRDAILEFMKDLPVRKVNGVGRVFEREL-DAVGIKTCGDIYSQRALLAKLFGEKAFHFLA 301
Query: 327 SVGLGLGSTNT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 384
LGLG T P + RKS+ +E TF+ K L KL IA+ L D+ + +GR
Sbjct: 302 QCYLGLGRTKIQPVENYERKSVGTESTFNEMGGKEALREKLWAIAQELEKDLTRTEFKGR 361
Query: 385 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
TL LK+K A+FEV +R K + ++D+ + + L+ E+P + LRL+GLR T
Sbjct: 362 TLVLKVKLATFEVLSRQCQPPKAVFLAKDLYTFSLPMLEKLEKEIPNMRLRLLGLRCTNL 421
>gi|403412384|emb|CCL99084.1| predicted protein [Fibroporia radiculosa]
Length = 310
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 120/273 (43%), Positives = 180/273 (65%), Gaps = 2/273 (0%)
Query: 26 TNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEH-MRARCAKLTSPVIS 84
+ KAG+ +D+ + +++ E SKGSK++ENE+RK+ + ++I +R R L I
Sbjct: 22 STTKAGL-AIDQSGINRIIAEASKGSKFYENEKRKDKDLTERIARILRHRDEVLKGVDIH 80
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTAN 144
+ D+ + +LE RDL+++ +HVDMDAFYA+VE L +PSL+G+P AV ++ TA+
Sbjct: 81 SIEHGVDQLLFKLEGQRDLTQTIVHVDMDAFYASVELLDDPSLEGRPFAVVGKGVLTTAS 140
Query: 145 YEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA 204
YEAR++GVR+ M GFIA+KLCP LI V F +Y S +F +YDPN AAS DE
Sbjct: 141 YEARKYGVRSGMAGFIAKKLCPHLILVGNHFDRYLEMSRRVMDIFRRYDPNMCAASCDEG 200
Query: 205 YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 264
Y++IT C + ++ E +++R +V +E LT SAG+APN++LAK+CSD NKPNGQF L
Sbjct: 201 YINITAYCEDHQLTAEECVQQMREAVQKETRLTVSAGIAPNKMLAKICSDKNKPNGQFKL 260
Query: 265 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDV 297
+D + F+ L IRK+ G+G+V E +L +
Sbjct: 261 ESDPATIKEFMHDLSIRKLPGVGRVNERLLESI 293
>gi|71756019|ref|XP_828924.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834310|gb|EAN79812.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 570
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 157/452 (34%), Positives = 244/452 (53%), Gaps = 29/452 (6%)
Query: 10 SSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIE 69
S+S P +Q T+ N KAGM VDKE+V V++EMS GS Y N++R +++++
Sbjct: 34 SASRQPTAFQ--LTLDCN-KAGMGNVDKERVAAVIHEMSAGSGYLCNQQRLSKSREKQLQ 90
Query: 70 HMRARCAKLTSPVI--------SHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVET 121
++ + + T + + ++ K ELEATR L +++H+DMD FYAAVE
Sbjct: 91 ELKRKSSLFTQLLGGERNAARRTQWEVKVSKIEQELEATRRLG-TYIHLDMDMFYAAVEI 149
Query: 122 LSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYY 181
+P P+AVGT +M+ TANY AR GVR MPG+I K+CP L+ +P DF Y
Sbjct: 150 KKHPEYANVPLAVGTKTMLTTANYVARGCGVRPGMPGYIGLKICPNLLILPPDFDTYNEE 209
Query: 182 SDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRERGISGIE-IAEELRTSVYEEAGLTCS 239
S+ R++ +YDPN+++ LDE L+++ + R G E +A ELR V+ E LT S
Sbjct: 210 SNTVRRIVAEYDPNYISFGLDELTLEVSAYIERFEGTKTAEDVASELRVRVFGETKLTAS 269
Query: 240 AGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVF 298
AG+ P LAK+ S+INKPNGQ L + R VMT++ L +R + GIGK E +L+
Sbjct: 270 AGIGPTAALAKIASNINKPNGQHDLNLHTRGDVMTYVRDLGLRSVPGIGKAMEALLKG-L 328
Query: 299 GINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-----------GSTNTPQARFRKSIS 347
GI T ++ + LC +F+ T F L +G+ GS + RKS+
Sbjct: 329 GITTLSDIYNRRVELCYIFTEKTYRFLLGASIGIMQWPDACNIPGGSVDDGTGVGRKSVG 388
Query: 348 SERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKY 407
SERTF + + K L + I +++K L R ++L+++ A++ R + L ++
Sbjct: 389 SERTFKILQSKEELQEIVDFIFNSSYDELKKHELMCRQVSLRIRWATYRSRQYTMNLAQH 448
Query: 408 ISSSEDILKHASVLL--KAELPVSLRLIGLRV 437
S + + LL A + L+G+R+
Sbjct: 449 SDDSATLRRAVDGLLLPHAAKYSDMSLLGMRL 480
>gi|219112721|ref|XP_002178112.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410997|gb|EEC50926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 460
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 157/467 (33%), Positives = 260/467 (55%), Gaps = 46/467 (9%)
Query: 32 MDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTS---PVISHYQK 88
M+G+D++++ +++ S S + + + R++ + ++I +RA+ K + Y++
Sbjct: 1 MEGIDRQRIDEIILRESGNSLFIQQQRRRDQKVDERIAGLRAKLQKENENDPKWKTFYER 60
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+K + + A R + + + VDMD FY A E L P L +P VG +MI T+NY AR
Sbjct: 61 AIEKCVPGILAARPIRSTCVVVDMDMFYMACELLERPELASEPACVGE-NMILTSNYLAR 119
Query: 149 RFGVRAAMPGFIARKLCPEL-------IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASL 201
++GVR+AM G+I +L EL I VP+ F Y S R V +YDP+ SL
Sbjct: 120 KYGVRSAMAGWIGDRLVEELSSGTKKLIHVPSRFDLYRTKSHQVRNVLSQYDPHLRCYSL 179
Query: 202 DEAYLDITEVC---------RER---GISGIEIAEELRTSVYE-EAGLTCSAGVAPNRLL 248
DEAY+D+ ER ++G ++ +++R+ V E GLTCSAG+APN LL
Sbjct: 180 DEAYMDLAPYLALKLTRNWDHERISAVLAGSQVLQDMRSRVTEVTGGLTCSAGLAPNFLL 239
Query: 249 AKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ 308
+K+ SD NKPNGQ ++P+D +++ F+ LP RK+ GIG+VT IL FGI T ++ +
Sbjct: 240 SKIASDRNKPNGQCLVPSDHESIIGFLHPLPTRKVSGIGRVTAKILSS-FGIATVADLYR 298
Query: 309 KGSLLCAVFSHSTADFFLSVGLGLGSTN--------TPQARFRKSISSERTFSVTEDKAL 360
+ SL+ +F ++A+F L +G ++ T +K IS ERTF+ E
Sbjct: 299 ERSLVRFLFQEASAEFLLRASIGCSGSDERNADDVETDDGPGQKGISRERTFAAKESWTA 358
Query: 361 LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK--YISSSEDILKHA 418
+ KL EIAE+LS+DM+ + + T+T+K+K SF+ +R+ +L + +I ++ D+ A
Sbjct: 359 INLKLEEIAELLSSDMKHKNIFAHTVTVKVKLRSFDCLSRSRSLGRGVFIQAAADLRPIA 418
Query: 419 SVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNF 459
LL+ EL ++RL+G+R + F + D QK++ +
Sbjct: 419 LDLLR-ELKDEFSGSFAVRLLGIRCSSFMGES----HDKAQKSIDTY 460
>gi|71756025|ref|XP_828927.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834313|gb|EAN79815.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 571
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 150/433 (34%), Positives = 239/433 (55%), Gaps = 28/433 (6%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM VDKE+V+ ++ +S+GS + NE+RK +++++ ++ R + L + ++ +
Sbjct: 50 KAGMGNVDKERVEAIIRNVSEGSSFLMNEQRKAEGREKQLQELK-RKSSLFTQLLGGERN 108
Query: 89 VADKRILEL---------EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
A ++ EL EATR L +++H+DMD FYAAVE +P P+AVG++SM
Sbjct: 109 AAQRKQWELKVSKIEQELEATRRLG-TYIHLDMDMFYAAVEIKKHPEYAAIPLAVGSVSM 167
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ TANY AR G+R+ MPG+I K+CP L+ +P DF Y S+ R++ +YDPNF +
Sbjct: 168 LSTANYVARECGIRSGMPGYIGLKVCPNLLILPPDFDAYNEESNTVRRIVAEYDPNFTSL 227
Query: 200 SLDEAYLDITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 257
LDE L+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INK
Sbjct: 228 GLDELTLEVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINK 287
Query: 258 PNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 316
PNGQ L + R VMT++ L +R + GIGKVTE +L+ + GI T ++ + LC +
Sbjct: 288 PNGQHDLNLHTREDVMTYVRDLGLRSVPGIGKVTEALLKGL-GITTLSDIYNRRVELCYI 346
Query: 317 FSHSTADFFLSVGLGL-----------GSTNTPQARFRKSISSERTFSVTEDKALLYRKL 365
F+ T F L +G+ S + RKS+ ERTF ++K L +
Sbjct: 347 FTEKTYCFLLGASIGIMQWPDMCSILGASIDDGTGVGRKSVGCERTFKTFQNKEELQEMV 406
Query: 366 AEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--K 423
+ + +++K L R ++LK++ S+ + L +Y S + + L+
Sbjct: 407 DFLVDYSYDELKKHELMCRQVSLKIRWNSYRHQQYTKNLTQYSDDSATLRRAVDELMLPH 466
Query: 424 AELPVSLRLIGLR 436
A +RL+G+R
Sbjct: 467 AAKYSEMRLLGVR 479
>gi|86143650|ref|ZP_01062026.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
gi|85829693|gb|EAQ48155.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
Length = 367
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/356 (42%), Positives = 217/356 (60%), Gaps = 14/356 (3%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
++R +HVDMDAFYA+VE L NP L+GKP+AVG S ++ A+YEAR+FGVR+AM G
Sbjct: 6 VNRKIIHVDMDAFYASVEQLDNPELRGKPVAVGGGSERGVVSAASYEARKFGVRSAMAGA 65
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+ARKLCP+LIFV T F +Y S R+VF +Y SLDEAYLD+TE ++ S
Sbjct: 66 LARKLCPDLIFVKTRFDRYREISAQIREVFHEYTDLVEPLSLDEAYLDVTE-NKKGNPSA 124
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSL 278
IA+E+R + E+ GL SAG++ N+ +AKV SD+NKPNGQ V P + V+ F+ +L
Sbjct: 125 TLIAKEIRAKIKEKTGLNASAGISINKFIAKVASDVNKPNGQKTVNPEE---VLPFLEAL 181
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNT 337
IRK G+GKVT + + GI T ++ K L F S + + +V G+ +
Sbjct: 182 DIRKFYGVGKVTAEKMYQL-GIFTGNDLKSKSLEFLQEKFGKS-GNHYYNVVRGIHLSEV 239
Query: 338 PQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ +ERTFS + + +L IAE + ++K + G+T+TLK+K + F
Sbjct: 240 KPHRIRKSLGAERTFSENISSEIFMLERLENIAEEIERRLKKSNVAGKTVTLKIKYSDFT 299
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN-EDKVRAPSD 450
++TR+ TL YI S E I + A LL E + S+RL+G+ + N EDK PS+
Sbjct: 300 LKTRSKTLPYYIRSKEVIYETAKELLYQEKMENSVRLLGITLANLNTEDKREKPSE 355
>gi|256078960|ref|XP_002575760.1| rab geranylgeranyl transferase alpha subunit [Schistosoma mansoni]
Length = 1262
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 159/473 (33%), Positives = 238/473 (50%), Gaps = 104/473 (21%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVIS 84
Y+ +KAGM+G+DK + +++ E SKGSK++ENE R+E ++Q+IE LT ++
Sbjct: 631 YSTSKAGMEGLDKATIMEIILENSKGSKFYENELRREKALRQQIEQKLKIIKSLTPVMLK 690
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTAN 144
+ AD + +L R SR +HVDMDAFYAAVE P L+ P+AVG+ SM+ T+N
Sbjct: 691 SGELEADHILKDLRQKRRFSRLIVHVDMDAFYAAVEIRDRPELRHHPVAVGSNSMLSTSN 750
Query: 145 YEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKY------------ 192
Y ARRFGVRA +PGF+ +KLCP+L +P DF KYT S + R + +Y
Sbjct: 751 YIARRFGVRAGLPGFLGKKLCPQLKIIPCDFVKYTAASRVVRSILMEYTVSAGNTQNPCE 810
Query: 193 --DPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAK 250
+ F A SLDEAYLDIT+ +R IE R + + +
Sbjct: 811 SDNIPFSAVSLDEAYLDITDHLVDRCDFPIE-----RRTFWPRSA--------------- 850
Query: 251 VCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG 310
P ++P GIG VTE L D FGI TC +++ K
Sbjct: 851 -------PGAPMLVP-------------------GIGHVTERRL-DAFGIKTCADLIDKR 883
Query: 311 SLLCAVFSHSTADFFLSVGLGL-----------------------------GSTNTPQAR 341
LL V + ++ +++ + LG S + Q +
Sbjct: 884 GLLWHVSTKTSMIYYMRIALGHSDDRWLTNIKNNFDEKSNKSFGFIDNDSENSVPSIQGQ 943
Query: 342 F---RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
RKS+S ERTFS T D+ L + ++A+MLS D+++E ++G+ +TLK+K +FE+R
Sbjct: 944 VELNRKSMSVERTFSDTSDENELMHRCEQLAQMLSTDLKEEHVKGQLITLKMKLDTFEIR 1003
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAEL-----------PVSLRLIGLRVTQF 440
TR+ L Y + +E I LL+ E+ P++LRL+GLR++
Sbjct: 1004 TRSQLLPDYTNHTEIINSFGRELLREEMVAFKSNPAVNKPLTLRLMGLRMSNL 1056
>gi|342185958|emb|CCC95443.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 610
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 154/469 (32%), Positives = 247/469 (52%), Gaps = 29/469 (6%)
Query: 20 SYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLT 79
S+ KAGM+ VDK +V+ ++ + S+ S YF NE RK Q++++ +R + A
Sbjct: 64 SFELTLDCTKAGMERVDKRRVESIIRDTSRDSDYFLNERRKAEGRQKQVQELRRKSATFA 123
Query: 80 SPVIS--------HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKP 131
+ +++ K ELEATR+L +++H+DMD F+AAVE NP+ P
Sbjct: 124 QLLGGERNAAQRKQWEQKVSKIEQELEATRNLG-TYVHLDMDMFFAAVEIKKNPAYAEVP 182
Query: 132 MAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCK 191
+ VGTM+M+ T NY AR +GVRAA+PGFI KLC L+ VP DF Y S + ++ +
Sbjct: 183 LGVGTMTMLSTTNYIARSYGVRAAIPGFIGMKLCRNLVIVPPDFKAYRAESAIVHRIASE 242
Query: 192 YDPNFMAASLDEAYLDITEVCRERG--ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLA 249
YDP+ ++ +DE L++++ +G ++ +++A ELR V+ E LT SAG+ P LA
Sbjct: 243 YDPDCVSVGMDELTLEVSDYLSRQGGTMTAVDVATELRARVFRETQLTSSAGIGPTAALA 302
Query: 250 KVCSDINKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ 308
K+ S+ NKPNGQ+ L + R VM ++ LP+R GIGK E+ L+ + INT ++ +
Sbjct: 303 KIASNYNKPNGQYELRLHTREDVMRYVRDLPLRAAPGIGKAMENTLKGL-DINTLGDIYE 361
Query: 309 KGSLLCAVFSHSTADFFLSVGLGLGSTN----TPQARF--------RKSISSERTFSVTE 356
+ LC V + F L +G+ S P F RKS+ SER FS
Sbjct: 362 RRVELCYVLTEKLYRFLLGNAIGVMSWPCSCVAPAYEFCDRTLITARKSVGSERAFSALC 421
Query: 357 DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILK 416
KA L I + + +++ R ++L+++ SF ++ +L ++ + +
Sbjct: 422 SKAELKEVATTIFQAVYDELRANEWVCRQVSLRIRWPSFRIQQFTKSLPQHSDDHSTLNR 481
Query: 417 HASVLLKAELP--VSLRLIGLRVTQFNEDK--VRAPSDPTQKTLTNFMT 461
LL + S+RL+G+R+ K + QKTL+ F T
Sbjct: 482 ALGELLLPHVSYYASMRLLGIRLLDLVSKKEYLAKQRGGVQKTLSQFCT 530
>gi|163754636|ref|ZP_02161758.1| putative DNA polymerase [Kordia algicida OT-1]
gi|161325577|gb|EDP96904.1| putative DNA polymerase [Kordia algicida OT-1]
Length = 370
Score = 244 bits (624), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 145/346 (41%), Positives = 209/346 (60%), Gaps = 11/346 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE L NP LKGKP+AVG ++ A+YEAR+FGVR+AM GF+A
Sbjct: 8 RKIIHVDMDAFYASVEQLDNPELKGKPLAVGGGAKRGVVSAASYEARKFGVRSAMSGFLA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+K CPELIFV F +Y S RK+F +Y SLDEAYLD+T+ ++ S
Sbjct: 68 KKRCPELIFVRPRFDRYKEISTQIRKIFYEYTDLVEPLSLDEAYLDVTK-NKKGNPSASL 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAEE+R + ++ GLT SAG++ N+ +AKV SD NKPNGQ +P + V+ F+ +L IR
Sbjct: 127 IAEEIRAKILKDVGLTASAGISINKFIAKVASDYNKPNGQKTVPPEE--VLDFLEALDIR 184
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
K G+GKVT + + GI T +++ K + F+ +V G+ + R
Sbjct: 185 KFYGVGKVTAERMYQL-GIFTGKDLKTKDVDFLTEHFGKSGKFYFNVVRGIHLSEVKPNR 243
Query: 342 FRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
KS+ +ERTFS +T + +L KL IA L ++K + G+T+TLK+K + F +T
Sbjct: 244 IAKSVGAERTFSDNLTSEIFML-EKLENIANELEKRLKKYAISGKTVTLKIKYSDFTTQT 302
Query: 400 RAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDK 444
R+ T+ +I+ IL+ A LL E L S+RL+G+ ++ N DK
Sbjct: 303 RSKTIAYFIADKSLILETAKELLYQEKLKDSVRLLGISLSNLNTDK 348
>gi|386819686|ref|ZP_10106902.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
gi|386424792|gb|EIJ38622.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
Length = 367
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/361 (40%), Positives = 216/361 (59%), Gaps = 12/361 (3%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGF 159
L R +HVDMDAFYA+VE + NP LKGKP+AVG ++ A+YEAR+FGVR+AM G+
Sbjct: 6 LLRKIIHVDMDAFYASVEQMDNPELKGKPLAVGGNEKRGVVSAASYEARKFGVRSAMSGY 65
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
A+K CPELIFV F +Y S R +F +Y SLDEAYLD+TE ++ S
Sbjct: 66 QAKKNCPELIFVRPRFDRYKEISTKIRTIFLEYTDLVEPLSLDEAYLDVTE-NKKGNPSA 124
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IA+E+R ++EE GLT SAG++ N+ +AK+ SD NKPNGQ + D V+ F+ L
Sbjct: 125 SNIAKEIRDRIFEEVGLTASAGISINKFVAKIASDYNKPNGQKTVEPDE--VIPFLEDLE 182
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTP 338
IRK G+GKVT + + GI T +++ +K L F S A F+ +V G+ +
Sbjct: 183 IRKFYGVGKVTTQKMYSL-GIFTGKDLKEKSVEFLTENFGKSGA-FYYNVVRGIHLSEVK 240
Query: 339 QARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R KS+ +ERTFS + + +L IA L ++K + G+T+TLK+K + F++
Sbjct: 241 PNRIPKSVGAERTFSENLSSEVFMLERLESIANELERRLKKSKIAGKTITLKIKYSDFKL 300
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSDPTQKTL 456
+TR+ TL +I+ IL+ A LL E L S+RL+G+ + N +K + + P QK +
Sbjct: 301 QTRSKTLDYFIADKSLILETAKELLYQEKLENSVRLLGISLANLNTEKKKKET-PIQKEV 359
Query: 457 T 457
+
Sbjct: 360 S 360
>gi|163786797|ref|ZP_02181245.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
gi|159878657|gb|EDP72713.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
Length = 369
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 146/357 (40%), Positives = 210/357 (58%), Gaps = 35/357 (9%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+V + NP LKGKP+AVG +I A+YEAR+FGV++AM G +A
Sbjct: 8 RKIIHVDMDAFYASVAQMDNPELKGKPIAVGGGGKRGVISAASYEARKFGVKSAMSGRLA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
KLCPELIFV TDF +Y+ S RK+F Y SLDEAYLD+TE + G+ S
Sbjct: 68 EKLCPELIFVRTDFERYSEISKRIRKIFYDYTDLVEPLSLDEAYLDVTE--NKIGLPSAT 125
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLP 279
IA+++R +++E GLT SAG++ N+ +AK+ SD NKPNGQ V P D V+ F+ L
Sbjct: 126 LIAQKIRQRIFDEVGLTASAGISINKFVAKIASDYNKPNGQKTVNPED---VLQFLEDLD 182
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF-----------FLSV 328
IRK G+GKV T E+M QKG +AD+ + +
Sbjct: 183 IRKFYGVGKV------------TAEKMYQKGIFTGKDLKSKSADYLEKNFGKSGRSYYHI 230
Query: 329 GLGLGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 387
G+ ++ R RKS+++ERTF + + KL +IAE +S + K + G+T+T
Sbjct: 231 VRGIHNSKVKPNRIRKSLAAERTFRENLSSEIFMLEKLRQIAEEVSKRLDKSKVAGKTIT 290
Query: 388 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNED 443
LK+K + F ++TR+ TL Y+S +L+ A LL + +L S+RL+G+ ++ N D
Sbjct: 291 LKIKYSDFTLQTRSKTLPYYVSEKAIVLETAKDLLYQDKLNNSVRLLGISLSNLNTD 347
>gi|224006311|ref|XP_002292116.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972635|gb|EED90967.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 444
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 143/391 (36%), Positives = 216/391 (55%), Gaps = 14/391 (3%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCA-KLTSPVISHYQ 87
KAGM+G+D+E++ ++ S S + + + + + QKI M+ R K + ++
Sbjct: 54 KAGMEGIDRERINAILLRESGNSTFMQRQRKMDENTNQKIADMKRRLDDKDDASGKKDWR 113
Query: 88 K-----VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICT 142
K D + + ++ R + + +DMD F+ + LS P L P VG SMI T
Sbjct: 114 KELEQSTIDPLLRQYQSQRQAFSTCVVIDMDGFFISCHILSLPHLAHIPACVGGTSMIST 173
Query: 143 ANYEARRFGVRAAMPGFIARKLCPEL-------IFVPTDFTKYTYYSDLTRKVFCKYDPN 195
+NY AR++GVRAAMPG++ L EL FV +DF Y S R V +YDPN
Sbjct: 174 SNYAARKYGVRAAMPGYLGSTLVKELSGGKETLTFVKSDFDLYKRKSGEVRAVLEEYDPN 233
Query: 196 FMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
SLDEAY+DI + + ++ +R V GLTCSAG+A N LLAKV SD+
Sbjct: 234 LSMYSLDEAYMDIGPYLKILLSTAQQLLNSIRQRVKNATGLTCSAGLASNFLLAKVASDV 293
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 315
NKPNGQ + + ++ F + L IRKI GIG+VTE +LR V + T +++ + +
Sbjct: 294 NKPNGQCFVGSSEAEILAFANPLSIRKISGIGRVTEKMLRGVCEVETVKDLYDHRAEVYF 353
Query: 316 VFSHSTADFFLSVGLGLGSTNT-PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA 374
+F ++A+ + +G T +A RK IS ERTFS T + L KL I + L
Sbjct: 354 LFKPASANLMMRASIGYAETGKHHEATTRKGISHERTFSPTSSWSDLCNKLETIVQALVH 413
Query: 375 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQ 405
D+++ L+ +T+TLK+K A+F++ TRAVTL+
Sbjct: 414 DLKQRNLKPKTITLKVKLANFDILTRAVTLE 444
>gi|164660502|ref|XP_001731374.1| hypothetical protein MGL_1557 [Malassezia globosa CBS 7966]
gi|159105274|gb|EDP44160.1| hypothetical protein MGL_1557 [Malassezia globosa CBS 7966]
Length = 525
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 145/358 (40%), Positives = 197/358 (55%), Gaps = 8/358 (2%)
Query: 94 ILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVR 153
+ ELE RDLSR+ LH DMD FYAAVE P L G AVG ++ TA+YEAR+FGVR
Sbjct: 29 VAELELERDLSRTILHCDMDMFYAAVELQRRPELAGACFAVGH-GVLLTASYEARQFGVR 87
Query: 154 AAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR 213
+AM F+AR +CP LI VP Y S+ V KYD SLDEAYLDIT C
Sbjct: 88 SAMAEFVARAICPNLIVVPAHMDVYKRSSEAVMAVLAKYDAQLYQRSLDEAYLDITSYCA 147
Query: 214 ERGISGI-EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVM 272
E G + ++A +LR V GLT S G+APNRLLAK+ SD KPNG + + R +
Sbjct: 148 EHGHAHPRDVAAQLRADVLAATGLTVSVGIAPNRLLAKIASDRCKPNGLWYVAPTRQDAL 207
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F+ L +RK+ GIG+V E +L+ I+TC ++ ++ L ++G+G
Sbjct: 208 AFMHDLSVRKVPGIGQVMERMLQ-AMSIHTCHDLWERRIELSLCIDSYRMLLASALGIGD 266
Query: 333 GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
P R+S+ E TF+ T D L+ KL E L D+ RGRT++L K
Sbjct: 267 AHVTLPARTARRSVGRELTFAPTSDPTHLHAKLRATCEQLERDLATLEYRGRTVSLVGKH 326
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-----LPVSLRLIGLRVTQFNEDKV 445
+FE TRA + +SS +D+ LL+ E +P+ LRLIG+RV+ + +V
Sbjct: 327 DTFERFTRARACPQGVSSFDDLYGVVHALLEQERASFPVPLCLRLIGVRVSSLIDLQV 384
>gi|123425224|ref|XP_001306764.1| ImpB/MucB/SamB family protein [Trichomonas vaginalis G3]
gi|121888356|gb|EAX93834.1| ImpB/MucB/SamB family protein [Trichomonas vaginalis G3]
Length = 519
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 158/464 (34%), Positives = 257/464 (55%), Gaps = 35/464 (7%)
Query: 24 VYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERK----EAFIQQKIEHMRARCAKLT 79
+Y AKAG+ + KV Y+ SK ++YF+ ++ + +A + + E +R+ A
Sbjct: 9 IYNQAKAGLTSNSNDIASKV-YDASKDTRYFQLQKERSKNCDATVSKIKEKLRSTGAAEM 67
Query: 80 SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---T 136
+ YQ + I +E+ R +++H D+D+F+A+VE L +PSLKG AVG
Sbjct: 68 D--FAAYQ--VEAFIKSIESKRSYETTYMHCDLDSFFASVEALLDPSLKGTAFAVGGSVK 123
Query: 137 MSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDF-TKYTYYSDLTRKVFCKYDPN 195
+I T++YEAR++GVR+ M F+A KLCP L V + KY +S ++VF KYDP
Sbjct: 124 RGIISTSSYEARKYGVRSGMAVFVAMKLCPHLNVVHYNHGDKYMNFSKQVQEVFKKYDPE 183
Query: 196 FMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255
F++ DEA LDIT + + + ++A++++ V+++ LT S GVA L+K+ SDI
Sbjct: 184 FVSFGCDEATLDITPLLND-NLHSDQLAKQIQQEVFDKTKLTVSIGVAHTPQLSKIASDI 242
Query: 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA 315
NKPNG F++P + + +F+ +LP+RKI GIG V E IL+ + GI TC ++L K + +
Sbjct: 243 NKPNGIFIVPKNDDDLKSFLHTLPVRKIPGIGGVNEQILKGI-GIETCGDILLKKAEIWL 301
Query: 316 VFSHSTADFFLSVGLGLGS---TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEML 372
SH F S +G+ + PQ +SIS +RT T+DK L + +A +
Sbjct: 302 TMSHKFCRFVFSAAVGVQPREYESGPQ----QSISKDRTIDATDDKCTLIDLVESLARKI 357
Query: 373 SADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL----KAELPV 428
S M+K + R + +K K +F+V +++ T Y +S E L +AS+ L + E +
Sbjct: 358 SKKMKKMRIACRNVAVKFKDINFKVISKSYTFD-YDTSDESDLVNASLKLLLEERQERSI 416
Query: 429 SLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFM---TSGHASKKI 469
LRL+G++ T +P D Q ++ F+ T + KKI
Sbjct: 417 KLRLVGVKATNLT-----SPGDKKQSSIKKFLQEKTESSSPKKI 455
>gi|402493090|ref|ZP_10839845.1| DNA polymerase IV 2 [Aquimarina agarilytica ZC1]
Length = 364
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/350 (42%), Positives = 213/350 (60%), Gaps = 13/350 (3%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPG 158
D+SR +HVDMDAFYA+VE L +PSLKGK +AVG S +I A+YEAR+FGVR+AM
Sbjct: 4 DISRKIIHVDMDAFYASVEQLDDPSLKGKAIAVGGSSDRGVISAASYEARKFGVRSAMSS 63
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS 218
+ARKLCPELIFV F +Y S R +F +Y SLDEAYLD+TE ++ S
Sbjct: 64 TVARKLCPELIFVKHHFERYKEVSQQVRAIFFEYTDLVEPLSLDEAYLDVTE-NKKGNPS 122
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISS 277
IAEE+R + E+ GLT SAG++ N+ +AKV SD NKPNGQ V+P + V+ F+ +
Sbjct: 123 ASLIAEEIRAKILEKTGLTASAGISINKFIAKVASDYNKPNGQKTVIPGE---VLDFLEN 179
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTN 336
L I+K G+GKVT+ + GI T ++ K + L F S A +F V G+ ++
Sbjct: 180 LDIKKFYGVGKVTQKKMY-ALGIYTGADLKTKTEAYLTQNFGKSGAHYFRIVR-GIHNSP 237
Query: 337 TPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKSI +ERTF+ + + +L E+++ L + K + G+T+TLK+K + F
Sbjct: 238 VKPHRTRKSIGAERTFNENLASEIYMEARLKELSDELERRLLKSKVAGKTITLKIKYSDF 297
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDK 444
+ TR+ TL YIS + + + A LL + ++ S+RL+GL + N K
Sbjct: 298 TLHTRSKTLSYYISDASLLFEVAKELLYQQKMENSVRLLGLSLHNLNNTK 347
>gi|71756023|ref|XP_828926.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834312|gb|EAN79814.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 571
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 150/437 (34%), Positives = 242/437 (55%), Gaps = 35/437 (8%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM VDKE+V+ ++ +S+GS + NE+RK +++++ ++ R + L + ++ +
Sbjct: 50 KAGMGNVDKERVEAIIRNVSEGSSFLMNEQRKAEGREKQLQELK-RKSSLFTQLLGGERN 108
Query: 89 VADKRILEL---------EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
A ++ EL EATR L +++H+DMD FYAAVE +P P+AVG++SM
Sbjct: 109 AARRKQWELKVSKIEQELEATRRLG-TYIHLDMDMFYAAVEIKKHPEYANVPLAVGSVSM 167
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ TANY AR G+R+ MPG+I K+CP L+ +P DF Y S+ R++ +YDPNF +
Sbjct: 168 LSTANYVARECGIRSGMPGYIGLKVCPNLLILPPDFDAYNEESNTVRRIVDEYDPNFTSL 227
Query: 200 SLDEAYLDITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 257
LD+ L+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INK
Sbjct: 228 GLDDLTLEVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINK 287
Query: 258 PNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 316
PNGQ L + R VMT++ L +R + G+GKVTE +L+ GI T ++ + LC +
Sbjct: 288 PNGQHDLNLHTRGDVMTYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYNRRVELCYI 346
Query: 317 FSHSTADFFLSVGLGL-------GSTNTPQARF-----RKSISSERTFSVTEDKALLYRK 364
++ F L +G+ + NT RK+ISSER+F V K L+
Sbjct: 347 LHNNLFRFLLGASIGIMQWPDAATAANTENCEGATGGQRKAISSERSFYVLHSKEQLHEM 406
Query: 365 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA 424
+ I E +M++ + R ++L ++ +S+ + +L +Y S + + LL
Sbjct: 407 IYSIFEEAYEEMRQNEMLCRQISLLVRWSSYRYQQYTKSLIQYSDDSATLRRAVDGLL-- 464
Query: 425 ELPVSLR-----LIGLR 436
LP + + L+G+R
Sbjct: 465 -LPHAAKYSEMCLLGVR 480
>gi|345868102|ref|ZP_08820098.1| impB/mucB/samB family protein [Bizionia argentinensis JUB59]
gi|344047584|gb|EGV43212.1| impB/mucB/samB family protein [Bizionia argentinensis JUB59]
Length = 367
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/356 (40%), Positives = 214/356 (60%), Gaps = 13/356 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI---CTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE L NP L+GKP+AVG A+YEAR+FGVR+AM G +A
Sbjct: 8 RKIIHVDMDAFYASVEQLDNPELQGKPLAVGGGGKRGVVAAASYEARKFGVRSAMSGMLA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP LIF PT F +Y S+ RK+F Y SLDEAYLD+TE ++ S
Sbjct: 68 QRLCPGLIFAPTRFERYREISEQVRKIFFDYTDLVEPLSLDEAYLDVTE-NKKGNPSASL 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPI 280
IA+E+R ++ E GLT SAG++ N+ +AK+ SD NKPNGQ V P D V+ F+ +L I
Sbjct: 127 IAQEIRERIFNEVGLTASAGISINKFIAKIASDYNKPNGQKTVNPED---VLPFLEALDI 183
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
RK G+GKVT + + GI T ++ K + + ++ V G+ ++
Sbjct: 184 RKFHGVGKVTAEKMYQL-GIFTGTDLKSKTIEFLSTHFGKSGGYYYHVVRGVHTSEVKPN 242
Query: 341 RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+++ERTFS + + KL IAE +S ++K + G+T+TLK+K + F ++T
Sbjct: 243 RIRKSLAAERTFSENLSSEIFMLEKLQHIAEEVSRRLKKSDVAGKTITLKIKYSDFTLQT 302
Query: 400 RAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSDPTQK 454
R+ T+ Y+S + I++ A LL + + S+RL+G+ ++ N +K + PT K
Sbjct: 303 RSKTVPYYVSETSIIMETAKDLLYQDSMQNSVRLLGISLSNLNTEKPK--KKPTSK 356
>gi|343472335|emb|CCD15475.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 610
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 151/469 (32%), Positives = 244/469 (52%), Gaps = 29/469 (6%)
Query: 20 SYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLT 79
S+ KAGM+ VDK +V+ ++ + S+ S YF NE RK Q++++ +R + A
Sbjct: 64 SFELTLDCTKAGMERVDKRRVESIIRDTSRDSDYFLNERRKAEGRQKQVQELRRKSATFA 123
Query: 80 SPVIS--------HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKP 131
+ +++ K ELEATR+L +++H+DMD F+AAVET NP+ P
Sbjct: 124 QLLGGERNAAQRKQWEQKVSKIEQELEATRNLG-TYVHLDMDMFFAAVETKKNPAYAEVP 182
Query: 132 MAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCK 191
+ VGTM+M+ T NY AR +GV +PGFI KLC +L+ VP D Y S + ++ +
Sbjct: 183 LGVGTMTMLSTTNYIARSYGVTTGIPGFIGMKLCRDLVIVPLDLEAYRAESAIVHRIASE 242
Query: 192 YDPNFMAASLDEAYLDITEVCRERG--ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLA 249
YDP+ ++ +DE L++++ +G ++ +++A ELR V+ E LT SAG+ P LA
Sbjct: 243 YDPDCVSVGMDELTLEVSDYLSRQGGTMTAVDVATELRARVFRETQLTSSAGIGPTAALA 302
Query: 250 KVCSDINKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ 308
K+ S+ NKPNGQ+ L + R VM ++ LP+R GIGK E+ L+ INT ++ +
Sbjct: 303 KIASNYNKPNGQYELRLHTREDVMRYVRDLPLRAAPGIGKAMENTLKG-LDINTLGDIYE 361
Query: 309 KGSLLCAVFSHSTADFFLSVGLGLGSTN----TPQARF--------RKSISSERTFSVTE 356
+ LC V + F L +G+ S P F RKS+ SER FS
Sbjct: 362 RRVELCYVLTEKLYRFLLGNAIGVMSWPCSCVAPAYEFCDRTLITARKSVGSERAFSALC 421
Query: 357 DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILK 416
KA L I + + +++ R ++L+++ SF ++ +L ++ + +
Sbjct: 422 SKAELKEVATTIFQAVYDELRANEWVCRQVSLRIRWPSFRIQQFTKSLPQHSDDHSTLNR 481
Query: 417 HASVLLKAELP--VSLRLIGLRVTQFNEDK--VRAPSDPTQKTLTNFMT 461
LL + S+RL+G+R+ K + QKTL+ F T
Sbjct: 482 ALGELLLPHVSYYASMRLLGIRLLDLVSKKEYLAKQRGGVQKTLSQFCT 530
>gi|300776039|ref|ZP_07085898.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
gi|300505172|gb|EFK36311.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
Length = 365
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/344 (41%), Positives = 210/344 (61%), Gaps = 14/344 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM--SMICTANYEARRFGVRAAMPGFIAR 162
R +HVDMDAFYA+VE NP+LKGKP+AVG ++ A+YEAR++GVR+AMP A+
Sbjct: 8 RKIIHVDMDAFYASVEQHDNPTLKGKPIAVGGQHRGVVAAASYEARKYGVRSAMPSKTAK 67
Query: 163 KLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGIE 221
+ CP+LIFVP F +Y S R++F +Y SLDEAYLD+TE ++G+ S
Sbjct: 68 EKCPQLIFVPPRFARYKEISKKIREIFYEYTDLVEPLSLDEAYLDVTE--NKKGMESANL 125
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+E+R ++E+ GLT SAG++ N+ LAKV SDINKPNGQ + D+M F+ LP+
Sbjct: 126 IAKEIRQKIFEQTGLTASAGISVNKFLAKVASDINKPNGQKTIHPDKME--EFLEELPVE 183
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K G+GKVT + + + GI ++ L+K SL L +F S ++ +V G+ ++
Sbjct: 184 KFYGVGKVTANKMFSL-GIYKGKD-LKKKSLEDLIRIFGKSGQHYY-NVVRGIHTSEVKP 240
Query: 340 ARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R +KS++ ERT F D+ + KL +A+ L +QK + GRTLTLK+K F +
Sbjct: 241 HRIQKSVAVERTFFEDLLDEQQINEKLESLAQELHQRLQKNNILGRTLTLKIKYKDFSLF 300
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 441
TR++T ++Y SS E L + ++RL+GL ++ N
Sbjct: 301 TRSITKEEYFSSPEQYFTTGKKLWELRPFDKAVRLLGLSLSHLN 344
>gi|403343923|gb|EJY71296.1| DNA polymerase IV / kappa [Oxytricha trifallax]
Length = 894
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 151/474 (31%), Positives = 252/474 (53%), Gaps = 46/474 (9%)
Query: 9 ASSSENP-RPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQK 67
+SSEN +P Q+ T G E +Q+ ++++SKGS+Y + EE++ +++K
Sbjct: 178 VNSSENQVQPNQNDATSIIQQSLRKKGKCPEDIQQRIFQISKGSEYQKQEEKRNIQVKEK 237
Query: 68 IEHMRARCAKLTSPVISHYQ--------------KVADKRIL-----ELEATRDLS---- 104
+E A+ ++++ S Q + ++KR +LE R +
Sbjct: 238 LEKYLAKINRMSNNADSWNQLEVGIKYSKFPLKLQSSNKRTTFYWEQQLEVKRRIQKHRT 297
Query: 105 -----RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGF 159
R+W+H+DMD FYAA+E N +L KP+AVG M+MI TA+Y AR +GV + +PGF
Sbjct: 298 ELVTERTWIHIDMDMFYAAIEIRDNLTLADKPVAVGEMNMIQTASYVAREYGVTSGLPGF 357
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR----ER 215
I ++LC +LIFV D KY +K+ +DP S DE LD+T+ + +
Sbjct: 358 IGKRLCKDLIFVKPDKEKYQKEYAEIKKLLQDFDPLLECPSPDEFLLDVTQYIKTYNLDD 417
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
+ I + +++R + ++ LT S GVA N+LLAK+CSD NKP+G L + + + F+
Sbjct: 418 DLGRIFLGDKIRKLILQKTQLTASCGVACNKLLAKICSDFNKPDGLTFLQLNAVEISKFM 477
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
+LPI+K+ GIGKVTE I+ + GI C++++ K + F+ + DF + LG+G
Sbjct: 478 DNLPIKKLQGIGKVTEMIMNGL-GIFNCKDIVVKAREIYINFTENVFDFLVKSALGIGKN 536
Query: 336 -NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
+ Q + +KS+S +F D LL K+ E+A+ L+ E L GRTLT++ KT +
Sbjct: 537 LHDEQTQIKKSLSVAESFKNINDYELLKNKVIELAKELAQKCVAEQLLGRTLTMEYKTKN 596
Query: 395 FEVRT---------RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRV 437
+ R + Y + E+++ + L P+ +R+IGL++
Sbjct: 597 LLTKQKYTSNIQPYRQYSSSIYTDNEEELVNVSLKLFHQIWPIDGGMRMIGLKL 650
>gi|270356843|gb|ACZ80632.1| putative DNA-directed polymerase kappa [Filobasidiella depauperata]
Length = 570
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/355 (39%), Positives = 202/355 (56%), Gaps = 42/355 (11%)
Query: 90 ADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARR 149
AD+ ++E E +RDL+++ +HVDMDAFYA+VE +PSLK K VG ++ TA+YEAR+
Sbjct: 84 ADRILVEEEMSRDLTQTIIHVDMDAFYASVEVQRDPSLKNKAFGVGR-GVLTTASYEARK 142
Query: 150 FGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDIT 209
FGVR+ M GFIA+KLCP +I T F Y S R++ +YD N M ASLDE YL
Sbjct: 143 FGVRSGMAGFIAKKLCPNIILTDTHFDLYIAASKSVREILEQYDENLMMASLDEGYL--- 199
Query: 210 EVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLA---KVCSDINKPNGQFVLPN 266
+ LR V +E +T SAG+APNR+LA K+CSD NKPNGQ+ +
Sbjct: 200 --------------KHLRNQVEKETNMTISAGIAPNRMLAKMGKICSDKNKPNGQYEMNF 245
Query: 267 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL 326
+R ++ F+ LP+RKI G G+VTE L + G+ +C ++ K + L +
Sbjct: 246 ERSKIVRFMRDLPVRKIPGFGRVTERYL-ESLGVKSCGDIYDKRAELLVMNHWLGFRGLC 304
Query: 327 SVGLGLGSTN-TPQAR-FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 384
LG+ N TP+ R RKS+ ERTF + + L+ I + L D+++
Sbjct: 305 RTYLGIADNNVTPRKREERKSVGVERTFRNKTNDEDIMNTLSSIVDELERDLER------ 358
Query: 385 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ 439
+RTRA ++ K++SS++DIL A LL+ ELP+ +RL+G + Q
Sbjct: 359 ------------LRTRAKSVSKFVSSAKDILPIAQDLLQRELPLCIRLLGFFLPQ 401
>gi|390953838|ref|YP_006417596.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Aequorivita sublithincola DSM 14238]
gi|390419824|gb|AFL80581.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Aequorivita sublithincola DSM 14238]
Length = 367
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 143/346 (41%), Positives = 213/346 (61%), Gaps = 13/346 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE L NP L+GKP+AVG ++ A+YEAR+FGVR+AM G +A
Sbjct: 8 RKIIHIDMDAFYASVEQLDNPELRGKPLAVGGSGQRGVVAAASYEARKFGVRSAMSGAMA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCPELIFV T+F +Y S RK+F +Y SLDEAYLD+TE ++ S
Sbjct: 68 RKLCPELIFVKTNFDRYKEVSKQIRKIFLEYTDLVEPLSLDEAYLDVTE-NKKGNPSASM 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAEE+R + ++ GL SAG++ N+ +AK+ SDINKPNGQ L + V+ F+ +L ++
Sbjct: 127 IAEEIRKKIKKKTGLNASAGISINKFVAKIASDINKPNGQKTLSPEE--VVPFLETLDVK 184
Query: 282 KIGGIGKVT-EHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K G+GKVT E + R GI T +++ K L F S A F+ +V G+ ++
Sbjct: 185 KFYGVGKVTKEKMYR--LGIYTGKDLKGKSLEFLEENFGKSGA-FYHNVVRGIHNSKVKP 241
Query: 340 ARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+R +KS+++E T F + + +L EIA + + K L G+T+TLK+K + F ++
Sbjct: 242 SRTQKSLAAEHTFFENISSEIFMMERLDEIAAEVEKRLHKSKLAGKTVTLKIKYSDFTLQ 301
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 443
TR+ TL +++S E IL LL E + S+RL+G+ ++ N +
Sbjct: 302 TRSKTLPLFVASKELILDVVKELLFQERMKESVRLLGISISNLNNE 347
>gi|408491441|ref|YP_006867810.1| DNA polymerase IV DinP [Psychroflexus torquis ATCC 700755]
gi|408468716|gb|AFU69060.1| DNA polymerase IV DinP [Psychroflexus torquis ATCC 700755]
Length = 365
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/347 (41%), Positives = 213/347 (61%), Gaps = 13/347 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE L +PSL GK +AVG S ++ A+YEAR+FGV++AM G +A
Sbjct: 8 RKIIHVDMDAFYASVEQLDDPSLSGKALAVGGSSRRGVVAAASYEARKFGVKSAMSGRLA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP LIFV F +Y S + RKVF +Y SLDEAYLD+T V + S
Sbjct: 68 TRLCPHLIFVKPRFERYKEISQIIRKVFFEYTDLVEPLSLDEAYLDVT-VNKFNYPSATI 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A E+R + + GL SAG++ N+ +AK+ SDINKPNGQ +P + V+ F+ +L IR
Sbjct: 127 LAREIREKIKDRTGLNASAGISINKFIAKIASDINKPNGQKTIPPE--DVIDFLETLDIR 184
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
K G+GKVT+ + + GI T ++ L+ L F S +F +V G+ ++ +
Sbjct: 185 KFHGVGKVTQEKMYGL-GIFTGVDLKLKTLEYLQDHFGKSGLHYF-NVVRGVHLSDVKPS 242
Query: 341 RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +ERTFS + + KL +IAE + ++ + G+T+TLKLKT+ F ++T
Sbjct: 243 RIRKSLGAERTFSKNISSEIYMLEKLEDIAEEVERRLKGSRVAGKTITLKLKTSDFNIQT 302
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 444
R+ TL+ +ISS I++ LL E P+ S+RL+G+ ++ N DK
Sbjct: 303 RSKTLKFFISSKALIMEETKALLFQE-PIKDSIRLLGISLSNLNTDK 348
>gi|330840359|ref|XP_003292184.1| hypothetical protein DICPUDRAFT_95543 [Dictyostelium purpureum]
gi|325077572|gb|EGC31275.1| hypothetical protein DICPUDRAFT_95543 [Dictyostelium purpureum]
Length = 489
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/308 (38%), Positives = 189/308 (61%), Gaps = 6/308 (1%)
Query: 26 TNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISH 85
T KAGM+ VD E + ++ E S G+ + + +R IQ+ I + ++ +L P
Sbjct: 4 TEFKAGMEKVDIELINSMLKEFSVGTHFQQKLDRDFKKIQEYIGSILSKLDEL--PDTEE 61
Query: 86 YQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANY 145
YQK D+ I +L+ D SR ++H+DMDAFYA VE + NP L G P+AVG++ M+ T+NY
Sbjct: 62 YQKTVDEYIEKLKTLTDQSRMFIHIDMDAFYANVEEMDNPELNGHPVAVGSIDMLVTSNY 121
Query: 146 EARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 205
EAR++GVR+ +PG +A KLCP+L+ +P+ +Y S + R +F KYDPN+++ SLDE
Sbjct: 122 EARKYGVRSGLPGLLAMKLCPQLVILPSRMDRYREVSSVIRNIFSKYDPNYVSPSLDEGC 181
Query: 206 LDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL 264
+DIT+ + G++ +++A L++ +Y E LT S G++ + LL+K+CS+INKPNG F L
Sbjct: 182 IDITDYLKNNEGLTPVDVANSLQSDIYNETTLTSSMGISCSPLLSKICSEINKPNGFFFL 241
Query: 265 PNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF 324
N FI ++ I+K+ GIGKV + +L+ G+ T ++++ L +F D
Sbjct: 242 ENKH--TQEFIKTIQIKKLPGIGKVRQELLK-TLGLVTVGDVIEHRYELYFIFPEQHRDL 298
Query: 325 FLSVGLGL 332
L +
Sbjct: 299 LFKHALAV 306
>gi|149371089|ref|ZP_01890684.1| putative DNA polymerase [unidentified eubacterium SCB49]
gi|149355875|gb|EDM44433.1| putative DNA polymerase [unidentified eubacterium SCB49]
Length = 369
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 146/347 (42%), Positives = 211/347 (60%), Gaps = 13/347 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+V L +PSL GK +AVG +I A+YEAR+FGVR+AM G +A
Sbjct: 9 RKIIHVDMDAFYASVAQLDDPSLVGKAIAVGGSGRRGVISAASYEARKFGVRSAMAGSLA 68
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
KLCP LIFV TDF +Y SD RK+F +Y SLDEAYLD+TE ++ S
Sbjct: 69 IKLCPHLIFVKTDFERYKEISDRVRKIFFEYTDLVEPLSLDEAYLDVTE-NKKGNPSASL 127
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA E+R + E GL SAG++ N+ +AKV SDINKPNGQ +P + V+ F+ L I+
Sbjct: 128 IALEIRQKIKERTGLNASAGISINKFIAKVASDINKPNGQKTVPPEE--VIPFLEVLDIK 185
Query: 282 KIGGIGKVT-EHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K G+GKV E + R GI T ++ K L F S A ++ ++ G+ ++
Sbjct: 186 KFYGVGKVMKEKMYRH--GIYTGLDLKGKSIEFLSENFGKSGA-YYYNIVRGIHNSEVKP 242
Query: 340 ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+R RKS+++ERTFS + + KLA I+E + ++K + G+T+TLK+K + F ++
Sbjct: 243 SRTRKSLAAERTFSENIASEIFMLEKLAPISEEVERRLKKSKVAGKTVTLKIKYSDFTLQ 302
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDK 444
TR+ TL YIS I++ + LL E + S+RL+G+ ++ N +K
Sbjct: 303 TRSKTLPLYISDKNLIMETVTELLFQEGMKNSVRLLGISMSNLNNEK 349
>gi|420160537|ref|ZP_14667317.1| ImpB/MucB/SamB family protein [Capnocytophaga ochracea str. Holt
25]
gi|394760405|gb|EJF42952.1| ImpB/MucB/SamB family protein [Capnocytophaga ochracea str. Holt
25]
Length = 362
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 210/347 (60%), Gaps = 11/347 (3%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGF 159
++R +H+DMDAFYA+VE L P L+GK +AVG ++ TA+YEAR+FGVR+A+ G
Sbjct: 1 MNRKIIHIDMDAFYASVEQLDYPELRGKAIAVGGGEPRGVVATASYEARKFGVRSAISGA 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
ARKLCP LIFV F +Y S R +F +Y SLDEAYLD+T V ++ S
Sbjct: 61 QARKLCPHLIFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYLDVT-VNKKGNPSA 119
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IA+E+R ++++ GLT SAG++ N+ +AK+ SD KP+GQ + V F+ L
Sbjct: 120 TLIAQEIRQRIFQQTGLTASAGISVNKFIAKIASDYRKPDGQTTITE--AEVQDFLDRLD 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+RK GIGKVT + + GI ++ +K ++ +++ + G+ +
Sbjct: 178 VRKFYGIGKVTAEKMYQL-GIFKGRDLREKSLEFLERNFGNSGNYYYELSRGIHRSEVQP 236
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +E TF+ +T + +L R+L IAE ++ + K+ + G+T+TLK+K ++F V
Sbjct: 237 FRIRKSVGAEETFAENLTSEVYML-RELEHIAEDVARRLDKQQVAGKTVTLKIKYSNFTV 295
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 443
+TR+ TL+ +ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 296 QTRSKTLKDFISSKDDILLHIKELLYQEHPAESVRLLGISLSHLNNE 342
>gi|260061439|ref|YP_003194519.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
gi|88785571|gb|EAR16740.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
Length = 366
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 144/355 (40%), Positives = 209/355 (58%), Gaps = 14/355 (3%)
Query: 97 LEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVR 153
+E +R+L R +H+DMDAF+A+VE P L+G+P+AVG ++ A+YEAR FGVR
Sbjct: 1 MEESREL-RKIIHIDMDAFFASVEQRDQPELRGRPIAVGGGAKRGVVAAASYEARTFGVR 59
Query: 154 AAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR 213
+AM G AR+LCPEL+FV F +Y S R +F +Y SLDEAYLD+T
Sbjct: 60 SAMSGVQARRLCPELVFVKPRFDRYREVSRQIRGIFLEYTDLVEPLSLDEAYLDVT--AN 117
Query: 214 ERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVM 272
+G+ S IA E+R + EE GLT SAG++ N+ +AKV SD NKPNGQ +P + V
Sbjct: 118 RKGMPSATLIAREIRRRILEETGLTASAGISVNKFIAKVASDFNKPNGQKTVPPE--DVQ 175
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLG 331
F+ SL IRK G+GKVT + + GI T ++ Q L F S ++ V G
Sbjct: 176 EFLESLEIRKFHGVGKVTAEKM-NALGIFTGADLRRQSEHFLTGHFGKSGHHYYRVV-RG 233
Query: 332 LGSTNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 390
+ + +R KS+ +ERTFS + + KL +IAE LS ++ G+T+TLK+
Sbjct: 234 VHDSPVQPSRVPKSLGAERTFSENLSSEVFMVEKLTKIAEELSRRLRTRNRSGKTITLKI 293
Query: 391 KTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDK 444
+ + F ++TR+ TL +YI S E IL A LL + L S+RL+G+ ++ + +K
Sbjct: 294 RYSDFSLQTRSRTLAEYIDSPERILAAARDLLYQQPLENSVRLLGISLSNLDTEK 348
>gi|146298645|ref|YP_001193236.1| DNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
gi|146153063|gb|ABQ03917.1| DNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
Length = 360
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/349 (38%), Positives = 210/349 (60%), Gaps = 11/349 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE + NP+L+GKP+AVG ++ A+YEAR+FGVR+A+ G +A
Sbjct: 8 RKIIHIDMDAFYASVEQMDNPALRGKPLAVGGSENRGVVAAASYEARKFGVRSAISGVLA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+K CPE+IFV F +Y S K+F +Y SLDEAYLD+T+ ++ S
Sbjct: 68 KKYCPEIIFVRPRFDRYKEISSKIHKIFHEYTDLVEPLSLDEAYLDVTQ-NKKGNPSASL 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A+E+RT ++ E GLT SAG++ N+ +AK+ SDINKPNGQ + D ++ F+ LPIR
Sbjct: 127 LAQEIRTRIFNEVGLTASAGISVNKFVAKIASDINKPNGQKTVNPDE--IIPFLEELPIR 184
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
K G+GKVT + + GI T ++ K L F S A F+ SV G+ ++
Sbjct: 185 KFYGVGKVTTEKMYQL-GIFTGSDLKSKSLEFLEKHFGKSGA-FYYSVVRGIHNSEVKPH 242
Query: 341 RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R KS+++E TF V + + +L IA L +++ + G+T+TLK+K + F +T
Sbjct: 243 RITKSVAAEHTFDVNLSSEIFMLEQLERIAVSLEKRLKRHNVSGKTVTLKIKYSDFTQQT 302
Query: 400 RAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRA 447
R+ TL +IS I++ LL E + S+RL+G+ ++ N ++ +A
Sbjct: 303 RSKTLPYFISDKSLIMEIVEELLYQEKMKNSVRLLGISLSNLNTEEKKA 351
>gi|71756037|ref|XP_828933.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834319|gb|EAN79821.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 571
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 146/434 (33%), Positives = 238/434 (54%), Gaps = 29/434 (6%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM VDKE+V+ ++ +S+GS + NE+R +++++ ++ R + L + ++ +
Sbjct: 50 KAGMGNVDKERVEAIIRNVSEGSSFLMNEQRLAEGREKQLQELK-RKSSLFTQLLGGERN 108
Query: 89 VADKRILEL---------EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
A ++ EL EATR L +++H+DMD FYAAVE +P P+A+GTM+
Sbjct: 109 AAQRKQWELKVSKIEQELEATRRLG-TYIHLDMDMFYAAVEIKKHPEYAAIPLAIGTMTR 167
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ TANY AR GVR +MPGF+A K+CP L+ +P DF Y S+ R++ +YDPN+++
Sbjct: 168 LQTANYIARGRGVRCSMPGFLALKICPNLLILPPDFDAYNEESNTVRRIVAEYDPNYISF 227
Query: 200 SLDEAYLDITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 257
LDE L+++ + R G E +A ELR V+ + LT SAG+ P LAK+ S+INK
Sbjct: 228 GLDELTLEVSAYIERFEGTKTAEDVASELRVRVFGDTKLTASAGIGPTAALAKIASNINK 287
Query: 258 PNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 316
PNGQ L + R VMT++ L +R + G+GKVTE +L+ GI T ++ + LC +
Sbjct: 288 PNGQHDLNLHTREDVMTYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYNRRVELCYI 346
Query: 317 FSHSTADFFLSVGLGL-------GSTNTPQARF-----RKSISSERTFSVTEDKALLYRK 364
++ F L +G+ + NT RK+ISSER+ + K +
Sbjct: 347 LHNNLFRFLLGASIGIVQWPDAATAANTENCEGATGGQRKAISSERSITTPRTKEGMQEM 406
Query: 365 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-- 422
+ + +M+K L R ++L+++ AS+ + +L +Y S + + LL
Sbjct: 407 VDTVFNGAYEEMRKSELMCRRISLRIRWASYRYQQYTKSLIQYSDDSATLRRAVDGLLLP 466
Query: 423 KAELPVSLRLIGLR 436
A + L+G+R
Sbjct: 467 HAAKYSEISLLGVR 480
>gi|344202523|ref|YP_004787666.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
gi|343954445|gb|AEM70244.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
Length = 366
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 144/344 (41%), Positives = 207/344 (60%), Gaps = 13/344 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP LKGKP+AVG S ++ A+YEAR+FGVR+AM G IA
Sbjct: 8 RKIIHVDMDAFYASVEQHDNPELKGKPIAVGGGSKRGVVSAASYEARKFGVRSAMAGAIA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
R+ CPELIFV F +Y S R +F +Y SLDEAYLD+TE ++ S
Sbjct: 68 RRNCPELIFVRPRFDRYKEISKQIRGIFFEYTDLVEPLSLDEAYLDVTE-NKKGNPSATL 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPI 280
IA+E+R ++++ GLT SAG++ N+ +AKV SD NKPNGQ V P + V+ F+ +L I
Sbjct: 127 IAQEIRNKIFDKTGLTASAGISINKFIAKVASDYNKPNGQKTVNPEE---VIEFLENLDI 183
Query: 281 RKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
RK G+GKVT E + R GI T ++ QK + ++ +V G+ ++
Sbjct: 184 RKFYGVGKVTAEKMYR--LGIFTGFDLKQKSVDFLEKHFGKSGSYYYNVVRGIHLSSVKP 241
Query: 340 ARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R KS+ +ERT F + + KL IA L +QK + G+T+TLK+K + F ++
Sbjct: 242 HRIPKSVGAERTFFENLSSEIFMLEKLENIASELEKRLQKSKIAGKTITLKIKYSDFTLQ 301
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFN 441
TR+ TL +I+S + IL+ A LL ++ L S+RL+G+ + N
Sbjct: 302 TRSKTLPYFIASKDLILETAKELLYQSSLENSVRLLGISLANLN 345
>gi|261334853|emb|CBH17847.1| DNA polymerase IV, putative [Trypanosoma brucei gambiense DAL972]
Length = 571
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 149/459 (32%), Positives = 249/459 (54%), Gaps = 36/459 (7%)
Query: 10 SSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIE 69
S+S P +Q T+ N KAGM VDKE+V+ ++ +S+GS + NE+RK +++++
Sbjct: 34 SASRQPTAFQ--LTLDCN-KAGMGNVDKERVEAIIRNVSEGSSFLMNEQRKAEGREKQLQ 90
Query: 70 HMRARCAKLT--------SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVET 121
++ + + T + + ++ K ELEATR L +++H+DMD FYAAVE
Sbjct: 91 ELKRKSSLFTQLLGGERNAAQRTQWEVKVSKIEQELEATRRLG-TYIHLDMDMFYAAVEI 149
Query: 122 LSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYY 181
+P P+A+GT++ + TANY AR G+R MPGF+A K+CP L+ +P DF Y
Sbjct: 150 KKHPEYATIPLAIGTITRLITANYIARGRGIRQGMPGFLALKICPNLLILPPDFDAYNEE 209
Query: 182 SDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRERGISGIE-IAEELRTSVYEEAGLTCS 239
S++ R++ +YDPN+++ LD+ L+++ + R G E +A ELR V+ E LT S
Sbjct: 210 SNIVRRIVAEYDPNYISFGLDDFTLEVSAYIERFEGTKTAEDVASELRVRVFGETKLTAS 269
Query: 240 AGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVF 298
AG+ P LAK+ S+INKPNGQ L + R VMT++ L +R + G+GKVTE +L+
Sbjct: 270 AGIGPTAALAKIASNINKPNGQHDLNLHTRQDVMTYVRDLGLRSVPGVGKVTEALLKG-L 328
Query: 299 GINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-------GSTNT-----PQARFRKSI 346
GI T ++ + LC + ++ F L +G+ + NT RK+I
Sbjct: 329 GITTLSDIYDRRVELCYILHNNLFRFLLGASIGIMQWPDAATAANTENCEGATGEQRKAI 388
Query: 347 SSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK 406
SSER+ + K + + + +M+K + R ++L ++ AS+ + +L +
Sbjct: 389 SSERSITTPRTKEGMQEMVDTVFNGAYEEMRKSEIMCRRISLTIRWASYRYQQYTKSLIQ 448
Query: 407 YISSSEDILKHASVLLKAELPVSLR-----LIGLRVTQF 440
Y S + + L+ LP + + L+G+R++
Sbjct: 449 YSDDSATLRRAVDELM---LPHAAKYSEMCLLGVRLSDL 484
>gi|325286065|ref|YP_004261855.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
gi|324321519|gb|ADY28984.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
Length = 365
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 147/369 (39%), Positives = 213/369 (57%), Gaps = 14/369 (3%)
Query: 100 TRDLS-RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAA 155
T+DL R +HVDMDAFYA+VE L NP L GKP+AVG ++ A+YEAR+FGVR+A
Sbjct: 2 TKDLPLRKIIHVDMDAFYASVEQLDNPELIGKPLAVGGGEKRGVVSAASYEARKFGVRSA 61
Query: 156 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 215
M G++A++ CP+LIFVP F +Y S R +F Y SLDEAYLD+T V ++
Sbjct: 62 MSGYMAKRNCPDLIFVPPRFARYKEISQKIRAIFYDYTDLVEPLSLDEAYLDVT-VNKKG 120
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 274
S +A+E+R +Y E GLT SAG++ N+ +AKV SD NKPNGQ V P + V+ F
Sbjct: 121 NPSASLLAKEIRERIYNELGLTASAGISINKFIAKVASDYNKPNGQKTVNPEE---VLAF 177
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLG 333
+ L IRK G+GKVT + V GI T ++ K L F S A ++ V G+
Sbjct: 178 LEELEIRKFYGVGKVTAEKMYKV-GIFTGLDLKNKSLEFLEKHFGKSGA-YYYHVVRGIH 235
Query: 334 STNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
++ R KS+ +ERTF+ + + +L IA L ++K + G+T+TLK+K
Sbjct: 236 NSPVKPNRIPKSVGAERTFNENLSSEIFMLERLENIANELERRLKKSKIAGKTITLKIKY 295
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSDP 451
+ F ++TR+ T+ +I+ + IL+ A LL E L S+RL+G+ + N + P
Sbjct: 296 SDFTLQTRSKTIPYFIADKDLILEIAKELLYQEKLENSVRLLGISLANLNTPDKKKPEQE 355
Query: 452 TQKTLTNFM 460
+ FM
Sbjct: 356 SISVQLKFM 364
>gi|295132163|ref|YP_003582839.1| DNA polymerase IV 2 [Zunongwangia profunda SM-A87]
gi|294980178|gb|ADF50643.1| DNA polymerase IV 2 [Zunongwangia profunda SM-A87]
Length = 354
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 143/349 (40%), Positives = 207/349 (59%), Gaps = 16/349 (4%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE L NP L+GKP+AVG S ++ A+YEAR+FGVR+AM IA++ CP++
Sbjct: 1 MDAFYASVEQLDNPELRGKPIAVGGSSQRGVVSAASYEARKFGVRSAMSSVIAKRNCPDI 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFV F +Y S R +F +Y SLDEAYLD+TE ++ S IA E+R
Sbjct: 61 IFVKARFDRYREISQQIRSIFFEYTDLVEPLSLDEAYLDVTE-NKKGNPSATMIAREIRE 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPIRKIGGIG 287
+ ++ GL SAG++ N+ +AKV SDINKPNGQ V P + V+ F+ L IRK G+G
Sbjct: 120 KIKQKTGLNASAGISVNKFIAKVASDINKPNGQKTVNPEE---VLDFLEQLEIRKFYGVG 176
Query: 288 KVT-EHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSI 346
KVT E + R GI T +++ K A ++ +V G+ + R RKS+
Sbjct: 177 KVTAEKMYR--LGIFTGKDLKSKSEAYLADHFGKHGPYYYNVVRGIHESEVKPNRMRKSL 234
Query: 347 SSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQ 405
+ERTFS + + KL IAE + +QK + G+T+TLK+K + F ++TR+ T+
Sbjct: 235 GAERTFSENISSEIFMLEKLTNIAEEIERRLQKSKVAGKTVTLKIKYSDFTLQTRSKTIS 294
Query: 406 KYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSDPTQ 453
+ISS E IL+ A LL E + S+RL+G+ ++ N D +PS T+
Sbjct: 295 YFISSKELILEMAKELLYQEKMKDSVRLLGISLSNLNTD---SPSVKTK 340
>gi|74209817|dbj|BAE23614.1| unnamed protein product [Mus musculus]
Length = 239
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 155/221 (70%), Gaps = 5/221 (2%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLA 249
T+ +ER + E + + + G G+APN +LA
Sbjct: 204 TQHLQER-----QDWPEDKRRYFIKMGNYLKIGIAPNTMLA 239
>gi|372223245|ref|ZP_09501666.1| DNA polymerase IV [Mesoflavibacter zeaxanthinifaciens S86]
Length = 365
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 141/346 (40%), Positives = 212/346 (61%), Gaps = 13/346 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP LKGKP+AVG S ++ A+YEAR++GVR+AM G++A
Sbjct: 8 RKIIHVDMDAFYASVEQKDNPELKGKPIAVGGGSKRGVVSAASYEARKYGVRSAMSGYLA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+K CPELIFV F +Y S R+VF +Y SLDEAYLD+T+ ++ S
Sbjct: 68 QKNCPELIFVKPRFDRYKEISQQIRQVFFEYTDLVEPLSLDEAYLDVTQ-NKKGNPSATL 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPI 280
IA+E+R + ++ GLT SAG++ N+ +AK+ SD NKPNGQ V P + V+ F+S+L I
Sbjct: 127 IAQEIRQKILDKTGLTASAGISINKFIAKIASDYNKPNGQKTVNPEE---VLEFLSALDI 183
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
RK G+GKVT + + GI T ++ +K L F S ++ +V G+ +
Sbjct: 184 RKFYGVGKVTAEKMYQL-GIFTGADLKKKSLEFLNQEFGKSGQHYY-NVVRGIHLSTVKP 241
Query: 340 ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+R KS+ +ERTFS + + ++L IA+ L ++K L G+T+TLK+K + F ++
Sbjct: 242 SRTPKSVGAERTFSENLSSEIFMLQRLENIAQELEKRLKKSKLAGKTVTLKIKYSDFTLQ 301
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNED 443
TR+ TL +I+ IL +A LL ++ L S+RL+G+ + N +
Sbjct: 302 TRSKTLPFFIADKSLILDNAKELLYQSPLENSVRLLGISLANLNTE 347
>gi|298207148|ref|YP_003715327.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
gi|83849783|gb|EAP87651.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
Length = 368
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 145/355 (40%), Positives = 214/355 (60%), Gaps = 13/355 (3%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI---CTANYEARRFGVRAAMPGF 159
R +HVDMDAFYA+VE L NP L+GKP+AVG A+YEAR FGVR+AM G
Sbjct: 6 FERKIIHVDMDAFYASVEQLDNPDLRGKPIAVGGGGKRGVVSAASYEARVFGVRSAMSGA 65
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
A++LCPELIFV T+FT+Y S R++F +Y SLDEAYLD+TE ++ S
Sbjct: 66 QAQRLCPELIFVKTNFTRYKECSQQIREIFYEYTDKVEPLSLDEAYLDVTE-NKKGNPSA 124
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IA+E+R + + GL SAG++ N+ +AKV SDINKPNGQ + + V+ F+ +L
Sbjct: 125 TLIAKEIREKIKAKTGLNASAGISINKFIAKVASDINKPNGQKTINPEE--VIPFLETLD 182
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
IRK GIGKVT + + GI T ++ K + ++ + G+ ++
Sbjct: 183 IRKFYGIGKVTAEKMY-LHGIFTGNDLKSKSLEYLEEHFGKSGTYYYHIVRGIHNSEVKP 241
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +ERTFS +T + ++ R L IAE + ++K + G+T+TLK+K + F +
Sbjct: 242 HRTRKSLGAERTFSENITSELFMMER-LEHIAEEIERRLEKSNVAGKTVTLKIKYSDFTL 300
Query: 398 RTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFN-EDKVRA-PS 449
+TR+ TL Y+ E IL+ A LL + ++ S+RL+G+ ++ N ED+ +A PS
Sbjct: 301 QTRSKTLPYYLRKKEVILETAKELLYQDDMKNSVRLLGISLSNLNTEDRPKAKPS 355
>gi|381186729|ref|ZP_09894299.1| DNA polymerase IV [Flavobacterium frigoris PS1]
gi|379651573|gb|EIA10138.1| DNA polymerase IV [Flavobacterium frigoris PS1]
Length = 360
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/346 (38%), Positives = 205/346 (59%), Gaps = 9/346 (2%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGF 159
++R +H+DMDAFYA+VE + NP+L+GKP+AVG ++ A+YEAR+FGVR+A+ G
Sbjct: 6 VNRKIIHIDMDAFYASVEQMDNPALRGKPVAVGGSENRGVVAAASYEARKFGVRSAISGI 65
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+A+K CPELIFV F +Y S K+F +Y SLDEAYLD+T+ + +G
Sbjct: 66 MAKKYCPELIFVKPRFDRYKEISTKIHKIFHEYTDLVEPLSLDEAYLDVTQNKKGNPSAG 125
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
+ +AEE+R +++E GLT SAG++ N+ +AK+ SD NKPNGQ + D V F+ LP
Sbjct: 126 L-LAEEIRARIFKEVGLTASAGISINKFVAKIASDYNKPNGQKTVNPDE--VNAFLEELP 182
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
IRK G+GKVT + + G+ T ++ K + +F+ +V G+ ++
Sbjct: 183 IRKFYGVGKVTTEKMYQL-GVFTGLDLKSKSVEFLEKHFGKSGNFYFNVVRGIHNSEVKS 241
Query: 340 ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R KS+++E TF V + + KL IA L + K + G+T+TLK+K + F +
Sbjct: 242 DRITKSVAAEHTFDVNLSSEIFMLEKLEGIAIALERRLNKHKVAGKTITLKIKYSDFTQQ 301
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 443
TR+ T+ +IS IL+ LL E + S+RL+G+ ++ N +
Sbjct: 302 TRSKTVPYFISDKGLILEIVKELLYQERMKDSVRLLGISLSNLNTE 347
>gi|71756027|ref|XP_828928.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834314|gb|EAN79816.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 571
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 144/441 (32%), Positives = 240/441 (54%), Gaps = 35/441 (7%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM VDKE+V+ ++ +S+GS + NE+RK +++++ ++ R + L + ++ +
Sbjct: 50 KAGMGNVDKERVEAIIRNVSEGSSFLMNEQRKAEGREKQLQELK-RKSSLFTRLLGGERN 108
Query: 89 VADKRILEL---------EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
A ++ EL EATR L +++H+DMD FYAAVE +P P+A+GT++
Sbjct: 109 AAQRKQWELKVSKIEQELEATRRLG-TYIHLDMDMFYAAVEIKKHPEYAAIPLAIGTITR 167
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T NY AR G+R MPGF+A K+CP L+ +P DF Y S+ R++ +YDPN+++
Sbjct: 168 LITTNYVARGRGIRQGMPGFLALKICPNLLILPPDFDAYNEESNTVRRIVAEYDPNYISF 227
Query: 200 SLDEAYLDITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 257
LD+ L+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INK
Sbjct: 228 GLDDFTLEVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINK 287
Query: 258 PNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 316
PNGQ L + R VMT++ L +R + G+GKVTE +L+ GI T ++ + LC +
Sbjct: 288 PNGQHDLNLHTREDVMTYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYNRRVELCYI 346
Query: 317 FSHSTADFFLSVGLGL-------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRK 364
++ F L +G+ + NT RK+ISSER+ + K +
Sbjct: 347 LHNNLFRFLLGASIGIMQWPDAATAANTENCEGATGEQRKAISSERSITTPRTKEGMQEM 406
Query: 365 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA 424
L + +M+K + R ++L ++ AS+ + +L ++ S + + LL
Sbjct: 407 LDTVFNGAYEEMRKSEIMCRRISLTIRWASYRYQQYTKSLIQHSDDSATLRRAVDGLL-- 464
Query: 425 ELPVSLR-----LIGLRVTQF 440
LP + + L+G+R++
Sbjct: 465 -LPHAAKYSEMCLLGVRLSDL 484
>gi|126662622|ref|ZP_01733621.1| DNA polymerase IV [Flavobacteria bacterium BAL38]
gi|126626001|gb|EAZ96690.1| DNA polymerase IV [Flavobacteria bacterium BAL38]
Length = 353
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/353 (40%), Positives = 210/353 (59%), Gaps = 14/353 (3%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE + NP+LKGKP+AVG ++ A+YEAR+FGVR+A+ G A+KLCP+L
Sbjct: 1 MDAFYASVEQMDNPNLKGKPLAVGGSEVRGVVSAASYEARKFGVRSAISGIQAKKLCPDL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFVP F +Y S RK+F Y SLDEAYLD+TE ++ S IA+E+R
Sbjct: 61 IFVPPRFDRYKEISKQIRKIFLDYTDLVEPLSLDEAYLDVTE-NKKGNPSATLIAQEIRK 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
++EE GLT SAG++ N+ +AK+ SD NKPNGQ + D + F+ L ++K G+GK
Sbjct: 120 RIFEEVGLTASAGISANKFVAKIASDYNKPNGQKTVNPDE--IEPFLEKLDVKKFYGVGK 177
Query: 289 VTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSIS 347
VT + + GI T ++ QK L F +S +F + G+ ++ R KS+
Sbjct: 178 VTAEKMYQL-GIFTGYDLKQKSVEYLENHFGNSGLHYF-QIVRGIHNSAVKPNRKIKSVG 235
Query: 348 SERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK 406
+ERTF + + +L IA+ L +QK + G+T+TLK+K + F ++TR+ TL
Sbjct: 236 AERTFGENLSSEIFMEERLQSIAKELEKRLQKSKISGKTITLKIKYSDFTLQTRSKTLPY 295
Query: 407 YISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQF-NEDKVRAPSDPTQKTLT 457
++S I+ A LL E L S+RL+G+ V NE+K R P TQK+++
Sbjct: 296 FVSDKNIIVDVAKDLLYQERLKNSVRLLGISVHNLNNEEKTRIPL--TQKSVS 346
>gi|88801750|ref|ZP_01117278.1| DNA polymerase IV [Polaribacter irgensii 23-P]
gi|88782408|gb|EAR13585.1| DNA polymerase IV [Polaribacter irgensii 23-P]
Length = 360
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 213/348 (61%), Gaps = 13/348 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+V L NP L GK +AVG + ++ A+YEAR+FGV++AM F+A
Sbjct: 8 RKIIHVDMDAFYASVAQLDNPELIGKAIAVGGSAERGVVSAASYEARKFGVKSAMSSFLA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP LIFV TDF +Y S R +F +Y SLDEAYLD+TE ++ +S
Sbjct: 68 KQKCPHLIFVKTDFERYKEISQRIRAIFYEYTDLVEPLSLDEAYLDVTE-NKKGNLSASL 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA E+R +Y+E GL SAG++ N+ +AKV SDINKPNGQ + + V+ F+++LP+
Sbjct: 127 IAVEIRKRIYDEIGLRASAGISINKFIAKVASDINKPNGQKTINPEE--VIEFLAALPVN 184
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K G+GKVT + ++ GI T + L+K L L +F S A ++ + G+ ++
Sbjct: 185 KFYGVGKVTTAKMYNL-GIFTGND-LKKKPLEELMKLFGKSGAHYY-HIVRGIHNSAVKP 241
Query: 340 ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKSI++ERTFS + + +L +IAE L M+K +G+T+TLK+K + F +
Sbjct: 242 NRIRKSIAAERTFSENISSEIFMIERLEQIAEELERRMKKTDTKGKTITLKIKYSDFTQQ 301
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDKV 445
TR+ T+ ++ + ++ S LL + ++ S+RL+GL + ++V
Sbjct: 302 TRSKTMPHFMQAKKEFFPVVSELLYQQKITNSVRLLGLSFGNLDTEEV 349
>gi|71756033|ref|XP_828931.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834317|gb|EAN79819.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 570
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 142/418 (33%), Positives = 231/418 (55%), Gaps = 27/418 (6%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM VDKE+V+ ++ + +GS + NE+R +++++ ++ R + L + ++ +
Sbjct: 49 KAGMGNVDKERVEAIIRDAREGSPFLLNEQRLAEGREKQLQELK-RKSSLFTQLLGGERN 107
Query: 89 VADKRILEL---------EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
A ++ EL EATR L +++H+DMD FYAAVE +P P+A+GTM+
Sbjct: 108 AAQRKQWELKVSKMEQELEATRRLG-TYIHLDMDMFYAAVEIKKHPEYATIPLAIGTMTR 166
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ TANY AR GVR MPGF+A K+CP L+ +P D Y S++ R++ +YDPN++
Sbjct: 167 LQTANYIARGRGVRPGMPGFLALKICPNLLLLPPDDDSYYLESNIVRRIVAEYDPNYIVV 226
Query: 200 SLDEAYLDITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 257
LD+ L+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INK
Sbjct: 227 GLDDFTLEVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINK 286
Query: 258 PNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 316
PNGQ L + R VMT++ L +R + G+GKVTE +L+ + GI T ++ + LC +
Sbjct: 287 PNGQHDLNLHTRGDVMTYVRDLGLRSVPGVGKVTEALLKGL-GITTLGDIHDRRVELCYI 345
Query: 317 FSHSTADFFLSVGLGL-------GSTNTPQARF-----RKSISSERTFSVTEDKALLYRK 364
++ F L +G+ + NT RK+ISSER+F V K L+
Sbjct: 346 LHNNLFRFLLGASIGIMQWPDAATAANTENCEGATGGQRKAISSERSFYVLHSKEQLHEM 405
Query: 365 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 422
+ I E +M++ + R ++L ++ +S+ + +L +Y S + + LL
Sbjct: 406 IYSIFEEAYEEMRQNEMLCRQISLLVRWSSYRYQQYTKSLIQYSDDSATLRRAVDGLL 463
>gi|395802471|ref|ZP_10481724.1| DNA-directed DNA polymerase [Flavobacterium sp. F52]
gi|395435712|gb|EJG01653.1| DNA-directed DNA polymerase [Flavobacterium sp. F52]
Length = 360
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 135/349 (38%), Positives = 207/349 (59%), Gaps = 11/349 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE + NP L+GKP+AVG ++ A+YEAR+FGVR+A+ G +A
Sbjct: 8 RKIIHIDMDAFYASVEQMDNPELRGKPVAVGGSENRGVVSAASYEARKFGVRSAISGVLA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+K CPE+IFV F +Y S K+F +Y SLDEAYLD+T+ ++ S
Sbjct: 68 KKYCPEIIFVRPRFDRYKEISSKIHKIFHEYTDLVEPLSLDEAYLDVTK-NKKGNPSASL 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A+E+RT ++ E GLT SAG++ N+ +AK+ SD NKPNGQ + D V F+ LPIR
Sbjct: 127 LAQEIRTRIFNEVGLTASAGISVNKFVAKIASDYNKPNGQKTVNPDE--VEAFLEDLPIR 184
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
K G+GKVT + + GI T ++ K L F S A F+ V G+ ++ +
Sbjct: 185 KFYGVGKVTTEKMYQL-GIFTGTDLKSKSLEFLEKHFGKSGA-FYYHVVRGIHNSEVKSS 242
Query: 341 RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R KS+++E TF V + + +L IA L +++ + G+T+TLK+K + F +T
Sbjct: 243 RIAKSVAAEHTFDVNLSSEIFMMEQLERIASSLEKRLKRYNVSGKTITLKIKYSDFSQQT 302
Query: 400 RAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRA 447
R+ TL +IS I+++ LL E + S+RL+G+ ++ N + +A
Sbjct: 303 RSKTLPYFISDKSLIMENVEELLYQEKMKDSVRLLGISLSNLNTEVKKA 351
>gi|340617508|ref|YP_004735961.1| DNA polymerase IV [Zobellia galactanivorans]
gi|339732305|emb|CAZ95573.1| DNA polymerase IV [Zobellia galactanivorans]
Length = 366
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 140/352 (39%), Positives = 209/352 (59%), Gaps = 11/352 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE L NP L+GKP+AVG S ++ A+YEAR++GVR+AM +A
Sbjct: 8 RKIIHVDMDAFYASVEQLDNPDLRGKPIAVGGSSKRGVVAAASYEARKYGVRSAMSSVLA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP LIFV F +Y S R +F +Y SLDEAYLD+T V ++ S
Sbjct: 68 QRNCPGLIFVKPRFERYKEISHQIRNIFYEYTDLVEPLSLDEAYLDVT-VNKKGNPSASL 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+E+R +Y+ GL SAG++ N+ +AKV SDINKPNGQ + + +++ F+ L IR
Sbjct: 127 IAKEIRQKIYDTIGLNASAGISINKFIAKVASDINKPNGQKTVNPEEVSL--FLEELEIR 184
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
K G+GKVT + + GI T +++ L+ L F + ++ +V G+ ++
Sbjct: 185 KFYGVGKVTAEKMYKL-GIFTGKDLKLKTLEFLEGNFGKN-GSYYYNVVRGIHTSPVKPH 242
Query: 341 RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R KS+ +ERTF+ + + +L IAE L ++K + G+T+TLK+K + F + T
Sbjct: 243 RIPKSVGAERTFNENLSSEIFMLERLDHIAEELEKRLKKANIAGKTVTLKIKYSDFTLNT 302
Query: 400 RAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSD 450
R+ TL YISS IL+ A LL E L S+RL+G+ + N +K +D
Sbjct: 303 RSKTLAYYISSKSLILETAKELLYQEKLQNSVRLLGISLANLNTEKKEKTTD 354
>gi|332292065|ref|YP_004430674.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
gi|332170151|gb|AEE19406.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
Length = 370
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 149/356 (41%), Positives = 216/356 (60%), Gaps = 16/356 (4%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI---CTANYEARRFGVRAAMPGFIARKL 164
+HVDMDAFYA+VE L NP L+GK +AVG A+YEAR++GVR+AM G +ARKL
Sbjct: 10 IHVDMDAFYASVEQLDNPDLRGKAIAVGGGGERGVVSAASYEARKYGVRSAMAGALARKL 69
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGIEIA 223
CP+LIFV T+F +Y S R VF ++ SLDEAYLD+TE + G+ S IA
Sbjct: 70 CPDLIFVKTNFERYREVSAQIRSVFHEFTDLVEPLSLDEAYLDVTE--NKVGMPSATVIA 127
Query: 224 EELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKI 283
+R + E+ GL SAG++ N+ +AKV SDINKPNGQ +P + V+TF+ L IRK
Sbjct: 128 SWIRQRIKEKTGLNASAGISINKFIAKVASDINKPNGQKTIPPEE--VITFLEELDIRKF 185
Query: 284 GGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARF 342
GIGK T + + GI T +M ++ L F S A ++ + G+ + R
Sbjct: 186 YGIGKKTAEKMY-LHGIFTGMDMKMKSKEYLSDNFGKSGA-YYYDIVRGIQYSEVRPNRI 243
Query: 343 RKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
RKS+++ERTFS +T + +L KL IAE + + K + G+T+TLK+K + F ++TR
Sbjct: 244 RKSLAAERTFSENITSEIFML-EKLDIIAEEVEKRLAKSQVAGKTITLKIKYSDFTLQTR 302
Query: 401 AVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN-EDKVRAPSDPTQK 454
+ TL+ Y+ S E IL+ A LL E + S+RL+G+ ++ N ED+ + ++ K
Sbjct: 303 SKTLELYVRSKEIILETAKDLLYQEKMKNSVRLLGISLSNLNTEDRKKKDAEKAVK 358
>gi|328872079|gb|EGG20449.1| UMUC-like DNA-repair protein [Dictyostelium fasciculatum]
Length = 454
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 193/333 (57%), Gaps = 23/333 (6%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKL-----TSPVI 83
KAGM+ VD E + ++ S+GS YF+ + R++ E R C L T P
Sbjct: 9 KAGMESVDLEMINSMLDAFSQGS-YFQAKFRRDE------EKTRKYCEGLLRKLRTIPRT 61
Query: 84 SHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA 143
+ Y + DK I +LE TRD+SR++LH+DMDA+YA VE NPSLKGKP+AVG+M M+ T+
Sbjct: 62 NDYFEGVDKYIADLERTRDMSRTYLHLDMDAYYAHVEENDNPSLKGKPVAVGSMDMLVTS 121
Query: 144 NYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDE 203
NY AR++G+R+ +PG +A K+CP LI +P +Y S + R +D NF++ SLDE
Sbjct: 122 NYVARKYGIRSGIPGVLALKICPSLIILPQRMDRYREVSAIIRNQMQLFDENFISPSLDE 181
Query: 204 AYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF 262
+DIT V ++ + +IA+ L+ + E LTCS GVAP+ LLAK+CS+ NKPNG F
Sbjct: 182 GCVDITNVLKDNPSLKSTDIAKLLQQKILENTNLTCSMGVAPSPLLAKMCSETNKPNGYF 241
Query: 263 VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTA 322
VL D F+S+ I G+GK T H L ++ G+N E++L+ L + +
Sbjct: 242 VLDKDPKKCKEFVST-----ISGLGK-TRHRLLEMLGLNNVEDVLENKYDLFYILPETHR 295
Query: 323 DFF----LSVGLGLGSTNTPQARFRKSISSERT 351
D L + + ST R R IS E++
Sbjct: 296 DLLFKHALCIPIPPQSTQYFLLRKRTQISKEKS 328
>gi|347535095|ref|YP_004842520.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
gi|345528253|emb|CCB68283.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
Length = 361
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 135/348 (38%), Positives = 202/348 (58%), Gaps = 11/348 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE L P L+GKP+AVG ++ A+YEAR+FGVR+A+ G +A
Sbjct: 8 RKIIHIDMDAFYASVEQLDQPELRGKPIAVGGNEIRGVVSAASYEARKFGVRSALSGVLA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+K CP+LIFV F +YT S R +F +Y SLDEAYLD+T+ ++ S
Sbjct: 68 KKYCPDLIFVKPRFDRYTEISKKIRSIFYEYTDLVEPLSLDEAYLDVTQ-NKKNMSSATM 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPI 280
IA E+R ++ E GLT SAG++ N+ +AK+ SD NKPNGQ V PN+ V+ F+ LPI
Sbjct: 127 IAAEIRQKIFIELGLTASAGISINKFVAKIASDYNKPNGQKTVAPNE---VLLFLEQLPI 183
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+GKVT + + GI T ++ K + F+ V G+ +
Sbjct: 184 KKFYGVGKVTTEKMYQL-GIFTGLDLKSKSLDFLEKHFGKSGTFYYHVVRGVHNGEVKAN 242
Query: 341 RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R KS+++E TF + + + KL++IA L +QK G+T+TLK+K + F +T
Sbjct: 243 RIAKSVAAEHTFDINLTSEIFMLEKLSKIANELERRLQKHQKAGKTVTLKIKYSDFTQQT 302
Query: 400 RAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVR 446
R+ TL +IS + + A LL E L S+RL+G+ ++ N + +
Sbjct: 303 RSKTLPYFISDKSLLFEFAKELLYQEKLKNSVRLLGISLSNLNTETTK 350
>gi|399026065|ref|ZP_10728032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
gi|398076760|gb|EJL67810.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
Length = 364
Score = 228 bits (582), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 139/345 (40%), Positives = 209/345 (60%), Gaps = 16/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT--MSMICTANYEARRFGVRAAMPGFIAR 162
R +HVDMDAFYA+VE NP+LKGK +AVG ++ A+YEAR++GVR+AMP A+
Sbjct: 8 RKIIHVDMDAFYASVEQHDNPALKGKAIAVGGEHRGVVSAASYEARKYGVRSAMPSKTAK 67
Query: 163 KLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEI 222
+ CP LIFVP F +Y S R++F +Y SLDEAYLD+TE +E S +I
Sbjct: 68 EKCPHLIFVPPHFARYKEISRKIREIFYEYTDLVEPLSLDEAYLDVTENKKEIE-SANQI 126
Query: 223 AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRK 282
A E+R ++E+ GLT SAG++ N+ LAKV SDINKPNGQ + D+ + F+ LP+ K
Sbjct: 127 AREIRQKIFEQTGLTASAGISVNKFLAKVASDINKPNGQKTIHPDK--IENFLEELPVEK 184
Query: 283 IGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTPQA 340
G+G+VT + + + GI ++ L+K +L L ++F S ++ +V G+ ++
Sbjct: 185 FYGVGRVTANKMFTL-GIFKGKD-LKKKTLQELVSLFGKS-GSYYYNVVRGIHNSEVKPH 241
Query: 341 RFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R +KS++ ERT F D+ + KL ++ L +QK + GR LTLK+K F + T
Sbjct: 242 RIQKSVAVERTFFEDLFDEQQINEKLESLSAELHQRLQKNNILGRALTLKIKYKDFSLFT 301
Query: 400 RAVTLQKYISSSED---ILKHASVLLKAELPVSLRLIGLRVTQFN 441
R++T ++Y +S+E+ I K L + PV RL+GL ++ N
Sbjct: 302 RSITKEEYFTSAEEYFGISKKLWELRPFDKPV--RLLGLSLSHLN 344
>gi|355712668|gb|AES04426.1| polymerase kappa [Mustela putorius furo]
Length = 878
Score = 228 bits (582), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGSK++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 34 KAGMEGLDKEKINKIIMEATKGSKFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 93
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +RDL+ + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 94 QVDRFAMELEQSRDLNNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 153
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 154 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYKAVSTEVKEILADYDPNFMAMSLDEAYLNI 213
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 214 TKHLQER 220
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 116/265 (43%), Positives = 166/265 (62%), Gaps = 14/265 (5%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 296 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRQAVMDFI 355
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L+ GI C E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 356 KDLPIRKVSGIGKVTEKMLK-ALGIINCTELYQQRALLSLLFSETSWHHFLHISLGLGST 414
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + RKS+S ERTF+ Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 415 HLTRDGERKSMSVERTFNEISKAEEQYSLCRELCSELAQDLQKEGLKGRTVTIKLKNVNF 474
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVRA 447
EV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 475 EVKTRASTVSSVVSTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPSEEDKKHQ 534
Query: 448 PSDPTQKTLTNFMTSGHASKKIVGD 472
Q+T+ F+ +G+ + GD
Sbjct: 535 -----QRTIIGFLQAGNPTLSAPGD 554
>gi|319952817|ref|YP_004164084.1| DNA polymerase iv [Cellulophaga algicola DSM 14237]
gi|319421477|gb|ADV48586.1| DNA polymerase IV [Cellulophaga algicola DSM 14237]
Length = 366
Score = 228 bits (582), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 137/343 (39%), Positives = 201/343 (58%), Gaps = 11/343 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE L NP LKGKP+AVG ++ ANYEAR++GVR+AM +A
Sbjct: 8 RKIIHVDMDAFYASVEELDNPDLKGKPLAVGGSEIRGVVAAANYEARKYGVRSAMSSVMA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP++ FV F +Y S RK+F Y SLDEAYLD+T V ++ S
Sbjct: 68 KRNCPQITFVQPRFERYKEISQKIRKIFYDYTDLVEPLSLDEAYLDVT-VNKKGNPSASL 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPI 280
IA+E+R +++E GL SAG++ N+ +AKV SD NKPNGQ V P + V+ F+ L I
Sbjct: 127 IAKEIRQRIFDELGLVASAGISINKFIAKVASDYNKPNGQKTVNPEE---VIEFLEKLEI 183
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
RK G+GKVT + + GI T ++ QK + + ++ V G+ ++
Sbjct: 184 RKFYGVGKVTTEKMYKL-GIFTGFDLKQKSEIFLTENFGKSGGYYYHVVRGVHNSAVKPH 242
Query: 341 RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R KS+ +ERTFS + + +L IA L ++K + G+T+TLK+K + F ++T
Sbjct: 243 RIPKSVGAERTFSENLSSEIFMLERLEHIATELERRLKKSTISGKTITLKIKYSDFTLQT 302
Query: 400 RAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 441
R+ TL+ YI+ IL+ A LL E L S+RL+G+ + N
Sbjct: 303 RSKTLRYYIADKHLILETAKELLYQEKLENSVRLLGISLANLN 345
>gi|261334855|emb|CBH17849.1| DNA polymerase kappa, putative [Trypanosoma brucei gambiense
DAL972]
gi|261334857|emb|CBH17851.1| DNA polymerase kappa, putative [Trypanosoma brucei gambiense
DAL972]
Length = 570
Score = 228 bits (581), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 141/418 (33%), Positives = 231/418 (55%), Gaps = 27/418 (6%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM VDKE+V+ ++ + +GS + NE+R +++++ ++ R + L + ++ +
Sbjct: 49 KAGMGNVDKERVEAIIRDAREGSPFLLNEQRLAEGREKQLQELK-RKSSLFTQLLGGERN 107
Query: 89 VADKRILEL---------EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
A ++ EL EATR L +++H+DMD FYAAVE +P P+A+GTM+
Sbjct: 108 AAQRKQWELKVSKMEQELEATRRLG-TYIHLDMDMFYAAVEIKKHPEYATIPLAIGTMTR 166
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ TANY AR GVR MPGF+A K+CP L+ +P D Y S++ R++ +YDPN++
Sbjct: 167 LQTANYVARGRGVRPGMPGFLALKICPNLLLLPPDDDSYYLESNIVRRIVAEYDPNYIVV 226
Query: 200 SLDEAYLDITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 257
LD+ L+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INK
Sbjct: 227 GLDDFTLEVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINK 286
Query: 258 PNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 316
PNGQ L + R VMT++ L +R + G+GKVTE +L+ + GI T ++ + LC +
Sbjct: 287 PNGQHDLNLHTREDVMTYVRDLGLRSVPGVGKVTEALLKGL-GITTLGDIHDRRVELCYI 345
Query: 317 FSHSTADFFLSVGLGL-------GSTNTPQARF-----RKSISSERTFSVTEDKALLYRK 364
++ F L +G+ + NT RK+ISSER+F V K L+
Sbjct: 346 LHNNLFRFLLGASIGIMQWPDAATAANTENCEGATGGQRKAISSERSFYVLHSKEQLHEM 405
Query: 365 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 422
+ I E +M++ + R ++L ++ +S+ + +L ++ S + + LL
Sbjct: 406 IYSIFEEAYEEMRQNEMLCRQISLLVRWSSYRYQQYTKSLIQHSDDSATLRRAVDGLL 463
>gi|261334856|emb|CBH17850.1| DNA polymerase kappa, putative [Trypanosoma brucei gambiense
DAL972]
Length = 571
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 146/436 (33%), Positives = 235/436 (53%), Gaps = 28/436 (6%)
Query: 10 SSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIE 69
S+S P +Q T+ N KAGM VDKE+V+ ++ +G+ + NE+R ++++
Sbjct: 34 SASRQPTAFQL--TLDCN-KAGMGNVDKERVEAIIRGAGEGTPFLLNEQRLVEGREKQLR 90
Query: 70 HMRARCAKLT--------SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVET 121
++ + + T + + ++ K ELEATR L +++H+DMD FYAAVE
Sbjct: 91 ELKRKSSLFTRLLGGERNAAQRTQWELKVSKIEQELEATRRLG-TYIHLDMDMFYAAVEI 149
Query: 122 LSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYY 181
+P P+A+GTM+ + TANY AR G+R MPGF+A K+CP L+ +P DF Y
Sbjct: 150 KKHPEYATIPLAIGTMTRLQTANYIARGRGIRQGMPGFLALKICPNLLILPPDFDAYNEE 209
Query: 182 SDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRERGISGIE-IAEELRTSVYEEAGLTCS 239
S+ R++ +YDPN++ LDE L+++ + R G E +A ELR V+ E LT S
Sbjct: 210 SNTVRRIVAEYDPNYIVVGLDELTLEVSAYIERFEGTKTAEDVASELRVRVFGETKLTAS 269
Query: 240 AGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVF 298
AG+ P LAK+ S+INKPNGQ L + R VMT++ L +R + G+GKVTE +L+
Sbjct: 270 AGIGPTAALAKIASNINKPNGQHDLNLHTREDVMTYVRDLGLRSVPGVGKVTEALLKG-L 328
Query: 299 GINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-------GSTNTPQARF-----RKSI 346
GI T ++ + LC + ++ F L +G+ + NT RK+I
Sbjct: 329 GITTLGDIHDRRVELCYILHNNLFRFLLGASIGIMQWPDAATAANTENCEGATGGQRKAI 388
Query: 347 SSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK 406
SSER+F V K L+ + I E +M++ + R ++L ++ +S+ + +L +
Sbjct: 389 SSERSFYVLHSKEQLHEMIYSIFEEAYEEMRQNEMLCRQISLLVRWSSYRYQQYTKSLIQ 448
Query: 407 YISSSEDILKHASVLL 422
+ S + + LL
Sbjct: 449 HSDDSATLRRAVDGLL 464
>gi|281339406|gb|EFB14990.1| hypothetical protein PANDA_005468 [Ailuropoda melanoleuca]
Length = 828
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +RDLS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRDLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYYAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSTEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 205 TQHLQER 211
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 171/265 (64%), Gaps = 17/265 (6%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I +LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKNLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 THLARDGERKSMSVERTFSEVSKPEEQYSLCQELCSELAQDLQKEGLKGRTITIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 446
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK +
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDAEFPHPLRLRLMGIRLSSFPNEEDKKQ 524
Query: 447 APSDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ +G+ + G
Sbjct: 525 ------QRSIIGFLQAGNQTLSAAG 543
>gi|301763685|ref|XP_002917258.1| PREDICTED: DNA polymerase kappa-like [Ailuropoda melanoleuca]
Length = 869
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +RDLS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRDLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYYAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSTEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 205 TQHLQER 211
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 171/265 (64%), Gaps = 17/265 (6%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I +LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKNLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 THLARDGERKSMSVERTFSEVSKPEEQYSLCQELCSELAQDLQKEGLKGRTITIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 446
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK +
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDAEFPHPLRLRLMGIRLSSFPNEEDKKQ 524
Query: 447 APSDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ +G+ + G
Sbjct: 525 ------QRSIIGFLQAGNQTLSAAG 543
>gi|146092007|ref|XP_001470182.1| putative DNA polymerase kappa [Leishmania infantum JPCM5]
gi|134084976|emb|CAM69374.1| putative DNA polymerase kappa [Leishmania infantum JPCM5]
Length = 753
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 171/543 (31%), Positives = 262/543 (48%), Gaps = 94/543 (17%)
Query: 9 ASSSENPRPWQSYHTVY------TNA------------KAGMDGVDKEKVQKVVYEMSKG 50
SSS P S H+ + TNA KAG+ +KEK + ++ E+SK
Sbjct: 111 GSSSRAAAPHGSLHSFFQPNPASTNATTAPKVVYFDDRKAGLRSAEKEKTEAIIKELSKN 170
Query: 51 SKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQ--KVADKRILELEATRDLSRS-- 106
S ++ NEERK Q+++E + + + + V SH + + + +LEA + RS
Sbjct: 171 SSFYVNEERKAQQRQRQVEGLLVKTRQYEASVRSHPDVFRQLQRDVADLEAIFETYRSFD 230
Query: 107 --WLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKL 164
++H+DMD F+AAVE NP P+ +G+MSM+ T NY ARRFGV++ MPGFI +L
Sbjct: 231 SIYVHMDMDMFFAAVEMKKNPQYAEVPLGIGSMSMLSTTNYVARRFGVQSGMPGFIGMRL 290
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA-----------YLDITEVCR 213
CP+L+ VPTDF S + V +YD + +DE ++D+T
Sbjct: 291 CPQLVIVPTDFAACRAESAKFKAVVREYDSDAQLLGMDEVMMCLDDYLAHHHMDVTTHAG 350
Query: 214 ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVM 272
++ + EE R + E GLT SAG+AP LAK+ S+ KPNGQF V R AVM
Sbjct: 351 RFDVAE-RVIEECRRRIAEATGLTVSAGIAPTPTLAKMASNYKKPNGQFAVRLFSREAVM 409
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
+++S+P+R++ GIGK E +L + GI+T E+ ++ L + + T +F L+ +G+
Sbjct: 410 NYLASIPVRQVPGIGKSRESVLAGL-GIHTLGEVYEQRHRLFYILTRKTYEFLLASSIGI 468
Query: 333 G------------STNTPQARF--------------RKSISSERTFSVTEDK----ALLY 362
G S T + RKS+ ERTF ++ A+ Y
Sbjct: 469 GGMYDSLEAAPSSSAGTTNGKTVAAVDGGSNEDDWGRKSVGHERTFYKLTNRMALQAIAY 528
Query: 363 RKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 422
+ L E L+ +EGL + LKLK SF V+ + +L Y E + + LL
Sbjct: 529 KNLRRSHETLA----EEGLLCSQVVLKLKHRSFHVKQHSKSLNVYTDDHEVLRRALDELL 584
Query: 423 KAELPV-----SLRLIGLRVTQFNED--------------KVRAPSDPTQKTLTNFMTSG 463
+PV RL+G+R+ + K A ++ Q TL++F T
Sbjct: 585 ---MPVVDDFAEFRLLGVRLEKLRRRPRSDGTGGATTLTVKSAAEAESNQLTLSHFFTRQ 641
Query: 464 HAS 466
AS
Sbjct: 642 LAS 644
>gi|71756035|ref|XP_828932.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834318|gb|EAN79820.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 571
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 142/441 (32%), Positives = 238/441 (53%), Gaps = 35/441 (7%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM VDKE+V+ ++ + +G+ + NE+R +++++ ++ R + L + ++ +
Sbjct: 50 KAGMGNVDKERVEAIIRDAREGTPFLLNEQRLAEGREKQLQELK-RKSSLFTRLLGGERN 108
Query: 89 VADKRILEL---------EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
A ++ EL EATR L +++H+DMD FYAAVE +P P+A+GTM+M
Sbjct: 109 AAQRKQWELKVSKIEQELEATRRLG-TYIHLDMDMFYAAVEIKKHPEYATIPLAIGTMTM 167
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
I T NY AR G+R MPGF+A K+CP L+ +P D Y S++ R++ +YDPN++
Sbjct: 168 IITTNYVARGRGIRQGMPGFLALKICPNLLLLPPDDDSYYLESNIVRRIVAEYDPNYIVV 227
Query: 200 SLDEAYLDITE-VCRERGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 257
LD+ L+++ + R G E +A ELR V+ E LT SAG+ P LAK+ S+INK
Sbjct: 228 GLDDFTLEVSAYIERFEGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINK 287
Query: 258 PNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV 316
PNGQ L + R VMT++ L +R + G+GKVTE +L+ GI T ++ + LC +
Sbjct: 288 PNGQHDLNLHTRGDVMTYVRDLGLRSVPGVGKVTEALLKG-LGITTLSDIYNRRVELCYI 346
Query: 317 FSHSTADFFLSVGLGL-------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRK 364
++ F L +G+ + NT RK+ISSER+ + K +
Sbjct: 347 LHNNLFRFLLGASIGIMQWPDAATAANTENCEGATGEQRKAISSERSITTPRTKEGMQEM 406
Query: 365 LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA 424
+ + +M+K + R ++L ++ AS+ + +L +Y S + + L+
Sbjct: 407 VDTVFNGAYEEMRKSEIMCRRISLTIRWASYRYQQYTKSLIQYSDDSATLRRAVDELM-- 464
Query: 425 ELPVSLR-----LIGLRVTQF 440
LP + + L+G+R++
Sbjct: 465 -LPHAAKYSEMCLLGVRLSDL 484
>gi|326335225|ref|ZP_08201421.1| DNA-directed DNA polymerase IV [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325692633|gb|EGD34576.1| DNA-directed DNA polymerase IV [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 367
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 205/351 (58%), Gaps = 13/351 (3%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGF 159
+ R +H+DMDAFYA+VE NPSL GKP+AVG ++ TA+YEAR++GV +AM G
Sbjct: 1 MERKIIHIDMDAFYASVEQHDNPSLLGKPIAVGGSEPRGVVATASYEARKYGVHSAMSGV 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
IAR+LCP LIFV F +Y S R +F +Y SLDEAYLD+T ++ S
Sbjct: 61 IARRLCPTLIFVKPRFERYKEISSRIRNIFYEYTDLVEPLSLDEAYLDVT-TNKKNLSSA 119
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IAE++R+ ++E+ GLT SAG++ N+ +AK+ SD NKPNGQ +P + V++F+ L
Sbjct: 120 TLIAEQIRSKIFEQTGLTASAGISVNKFIAKIASDYNKPNGQKTVPPSK--VLSFLEGLD 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
++K GIGKVT + GI T ++ K + ++ ++F + G+ +
Sbjct: 178 VKKFYGIGKVTAEKMYQK-GIFTGADLRAKSLEELQSYFGNSGEYFYQIARGIHLSPVQP 236
Query: 340 ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R KSI E TF + + L +++E +S + K+ L +T+TLKLK + F+++
Sbjct: 237 FRLIKSIGVEHTFEKNISSEIFMTEPLQQLSEEVSLRLSKKKLLAKTVTLKLKYSDFKIQ 296
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN----EDK 444
TR+ T+ ++I S I LL E L S+RL+G+ ++ FN EDK
Sbjct: 297 TRSRTIPEFIGDSPTIYHIVKELLYQEKLRESIRLLGVSLSNFNYPIKEDK 347
>gi|340621022|ref|YP_004739473.1| DNA polymerase IV 2 [Capnocytophaga canimorsus Cc5]
gi|339901287|gb|AEK22366.1| DNA polymerase IV 2 [Capnocytophaga canimorsus Cc5]
Length = 370
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/344 (39%), Positives = 202/344 (58%), Gaps = 13/344 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE L P LKGKP+AVG +I A+YEAR+FGVR+AM G +A
Sbjct: 10 RKIIHIDMDAFFASVEQLDFPHLKGKPIAVGGGKERGVIAAASYEARKFGVRSAMSGVVA 69
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+K CPELIF+P F +Y S R++F +Y SLDEAYLD+T ++ S
Sbjct: 70 KKRCPELIFMPPRFERYRQISQQIREIFYQYTDLVEPLSLDEAYLDVTH-NKKNCPSATL 128
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA E+R +YE+ GLT SAG++ N+ +AK+ SD NKPNGQ + D V F+ L ++
Sbjct: 129 IATEIRQKIYEKTGLTASAGISINKFVAKIASDFNKPNGQKTVSFDE--VQDFLDVLDVK 186
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
+ GIGKVT + + GI T +++ K + A ++ + G+ + R
Sbjct: 187 RFYGIGKVTTEKMY-LKGIFTGKDLRNKSLSFLEEHFGNHAIYYYQLARGIHLSEVKPLR 245
Query: 342 FRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
KS+ +ERTFS +T + + + L IA+ L M K+G+ G+T+TLK+K + F V+T
Sbjct: 246 LPKSVGAERTFSKNITSE-VFMEKDLYAIAQELHERMAKKGVSGKTITLKIKYSDFSVQT 304
Query: 400 RAVTLQKYISSSEDILKHAS--VLLKAELPVSLRLIGLRVTQFN 441
R+ T I+ +I H S +L + L S+RL+G+ ++ N
Sbjct: 305 RSKTFPYQIAQKVEIF-HLSKELLYQQPLENSVRLLGISISNLN 347
>gi|365812957|pdb|3PZP|A Chain A, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
Thymine Dimer
gi|365812958|pdb|3PZP|B Chain B, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
Thymine Dimer
Length = 517
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 143/199 (71%)
Query: 17 PWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCA 76
P H + KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A
Sbjct: 2 PGGDPHMGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKA 61
Query: 77 KLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT 136
++TS + Q D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+
Sbjct: 62 QITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGS 121
Query: 137 MSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNF 196
MSM+ T+NY ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNF
Sbjct: 122 MSMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNF 181
Query: 197 MAASLDEAYLDITEVCRER 215
MA SLDEAYL+IT+ ER
Sbjct: 182 MAMSLDEAYLNITKHLEER 200
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 276 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 334
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 335 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 393
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 394 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 453
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 446
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 454 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDR 511
>gi|85374810|ref|YP_458872.1| DNA polymerase IV [Erythrobacter litoralis HTCC2594]
gi|84787893|gb|ABC64075.1| putative DNA damage-inducible protein [Erythrobacter litoralis
HTCC2594]
Length = 382
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 141/351 (40%), Positives = 202/351 (57%), Gaps = 14/351 (3%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPG 158
D R +HVDMDAF+A+VE NP L+GKP+AVG S ++ A+YEARRFGV++AMP
Sbjct: 21 DGLRKIIHVDMDAFFASVEQRDNPDLRGKPVAVGGSSGRGVVAAASYEARRFGVKSAMPS 80
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS 218
A++LCP+LIFV F Y S R++F +Y P+ SLDEAYLD+T+ + G S
Sbjct: 81 VTAKRLCPDLIFVKHRFEAYREASARIREIFNRYTPHVEPLSLDEAYLDVTDDLQAVG-S 139
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISS 277
A+ +R ++ EE GLT SAGV+ N+ LAK+ SD NKP+G V+ P + A F+ S
Sbjct: 140 ATGTAQAIRKAIREETGLTASAGVSYNKFLAKLASDQNKPDGLCVIRPGEGAA---FVQS 196
Query: 278 LPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
LPIR+ G+G K E + R GI+T ++ K S D+ G+
Sbjct: 197 LPIRRFHGVGPKGAEKMAR--LGIDTGADLAGKDLAWLRQNFGSFGDYLYRAARGIDLRP 254
Query: 337 TPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKS+ ERTFS + + R+ L I ++ +++ RGRT+TLK+K F
Sbjct: 255 IRTNRSRKSVGGERTFSQDQHEPDELRETLERIIAIVWERIERSKARGRTITLKMKYNDF 314
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFNEDK 444
TRA +L Y+S ++ A LL+A+LP+ L RL+GL ++ D+
Sbjct: 315 RTITRAQSLPHYVSGQDEFASVARDLLEAQLPLPLPIRLMGLTLSNLERDE 365
>gi|120437709|ref|YP_863395.1| DNA polymerase IV 2 [Gramella forsetii KT0803]
gi|117579859|emb|CAL68328.1| DNA polymerase IV 2 [Gramella forsetii KT0803]
Length = 363
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 210/348 (60%), Gaps = 15/348 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE L NP L+GK +AVG S ++ A+YEAR+FGVR+AM IA
Sbjct: 5 RKIIHIDMDAFYASVEQLDNPELRGKAVAVGGSSQRGVVSAASYEARKFGVRSAMSSVIA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFV F +Y S R++F +Y SLDEAYLD+TE ++ S
Sbjct: 65 KRNCPDLIFVKPRFERYKEISGQIREIFFEYTDLVEPLSLDEAYLDVTE-NKKGNPSATL 123
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPI 280
IA+++R + E+ GL SAG++ N+ +AK+ SD+NKPNGQ V P + V+ F+ L I
Sbjct: 124 IAKQIRDRIKEKTGLNASAGISINKFIAKIASDVNKPNGQKTVQPEE---VIAFLEELDI 180
Query: 281 RKIGGIGKVT-EHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
RK G+GKVT E + R GI T +++ L+ L F S F+ +V G+ +
Sbjct: 181 RKFYGVGKVTAEKMYR--LGIFTGKDLKLKSEEYLTEHFGKSGTHFY-NVVRGIHLSEVK 237
Query: 339 QARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +ERTF+ + + +L IAE + + K + G+T+TLK+K + F
Sbjct: 238 PHRIRKSLGAERTFNENISSEIFMLERLENIAEEIERRLTKSKVAGKTITLKIKYSDFTQ 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDK 444
+TR+ T+ YI++ + IL+ A LL E + S+RL+G+ ++ N +K
Sbjct: 298 QTRSRTINFYIANKDLILEIAKELLYQEKMKNSVRLLGISLSNLNTEK 345
>gi|409122245|ref|ZP_11221640.1| DNA polymerase IV 2 [Gillisia sp. CBA3202]
Length = 366
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 141/349 (40%), Positives = 206/349 (59%), Gaps = 17/349 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE L NP L+ KP+AVG S ++ A+YEAR+FGV++AM IA
Sbjct: 8 RKIIHIDMDAFYASVEQLDNPDLRNKPVAVGGSSERGVVSAASYEARKFGVKSAMSSVIA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
++ CP LIFV F +Y S R +F +Y SLDEAYLD+TE ++GI S
Sbjct: 68 KRNCPNLIFVKARFDRYKEISSQIRAIFLEYTDLVEPLSLDEAYLDVTE--NKKGIPSAT 125
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLP 279
IA+E+R + E+ GL SAG++ N+ +AKV SDINKPNGQ V P + V F+ L
Sbjct: 126 LIAQEIREKIKEKTGLNASAGISINKFIAKVASDINKPNGQKTVNPEE---VEEFLEQLQ 182
Query: 280 IRKIGGIGKVT-EHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNT 337
IRK G+GKVT E + R GI ++ K L F S ++ +V G+ ++
Sbjct: 183 IRKFYGVGKVTAEKMYR--LGIFKGIQLKDKSEEFLTENFGKS-GKYYYNVVRGIHNSEV 239
Query: 338 PQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ +ERTFS + + +L IAE + ++ + G+T+TLK+K + F
Sbjct: 240 KADRIRKSLGAERTFSENIASEIFMMERLENIAEEIERRLKGSKVAGKTVTLKIKYSDFT 299
Query: 397 VRTRAVTLQKYISSSEDILKHAS-VLLKAELPVSLRLIGLRVTQFNEDK 444
++TR+ TL YI+S IL A +L + ++ S+RL+G+ ++ N K
Sbjct: 300 LQTRSKTLPYYIASKAVILDTAKELLFQEKMKNSVRLLGITLSNLNTGK 348
>gi|148668569|gb|EDL00888.1| polymerase (DNA directed), kappa, isoform CRA_a [Mus musculus]
gi|148668570|gb|EDL00889.1| polymerase (DNA directed), kappa, isoform CRA_a [Mus musculus]
Length = 852
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 204 TQHLQER 210
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 167/263 (63%), Gaps = 10/263 (3%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 449
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ 524
Query: 450 DPTQKTLTNFMTSGHASKKIVGD 472
Q+++ F+ +G+ + GD
Sbjct: 525 ---QRSIIGFLQAGNQALSSTGD 544
>gi|6753636|ref|NP_036178.1| DNA polymerase kappa [Mus musculus]
gi|59798433|sp|Q9QUG2.1|POLK_MOUSE RecName: Full=DNA polymerase kappa; AltName: Full=DINB protein;
Short=DINP
gi|6049288|gb|AAF02541.1|AF163571_1 DINB protein [Mus musculus]
gi|6463734|dbj|BAA86942.1| DINB1 [Mus musculus]
gi|14279087|dbj|BAB59059.1| DNA polymerase kappa [Mus musculus]
Length = 852
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 204 TQHLQER 210
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 167/263 (63%), Gaps = 10/263 (3%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 449
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ 524
Query: 450 DPTQKTLTNFMTSGHASKKIVGD 472
Q+++ F+ +G+ + GD
Sbjct: 525 ---QRSIIGFLQAGNQALSSTGD 544
>gi|89889949|ref|ZP_01201460.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
gi|89518222|gb|EAS20878.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
Length = 361
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/347 (40%), Positives = 203/347 (58%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE P LKGKP+AVG ++ A+YEAR++GVR+AMP A
Sbjct: 7 RKIIHVDMDAFYASVEQRDFPELKGKPIAVGGGNNRGVVAAASYEARKYGVRSAMPSITA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+KLCP+LIFV F KY S R +F Y SLDEAYLD+TE + S
Sbjct: 67 KKLCPDLIFVKHRFDKYREVSSQIRDIFLDYTDLVEPLSLDEAYLDVTE-NKLNYPSATV 125
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA ++R +YE GLT SAG++ N+ +AK+ SD NKPNGQ + + V+ F+ L IR
Sbjct: 126 IAYDIRRRIYETTGLTASAGISINKFVAKIASDYNKPNGQKTITPEE--VIPFLEELEIR 183
Query: 282 KIGGIGKVT--EHILRDVF-GINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
K GIGKVT + L+ +F G + E L+ L F S A ++ ++ G+ +
Sbjct: 184 KFHGIGKVTAEKMYLQGIFTGAHLKERSLE---FLQEHFGKSGAHYY-NIVRGIHHSPVK 239
Query: 339 QARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +ERTFS + + +L +IAE + + K + G+T+TLK+K + F+
Sbjct: 240 PDRIRKSLGAERTFSENISSEIFMKERLTQIAEEIEKRLAKNDVAGKTVTLKIKYSDFKT 299
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 443
+TR+ TL +I + + IL A L++ E S+RL+G+ ++ N D
Sbjct: 300 QTRSKTLPHFIRTKDLILATAIELMEQEGFRESVRLLGITLSNLNTD 346
>gi|56160418|gb|AAV80823.1| polymerase kappa isoform 7 [Mus musculus]
Length = 495
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 204 TQHLQER 210
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 139/210 (66%), Gaps = 1/210 (0%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAE 425
EV+TRA T+ IS++E+I A LL+ +
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTD 494
>gi|440910682|gb|ELR60452.1| DNA polymerase kappa [Bos grunniens mutus]
Length = 884
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + AK+TS + Q
Sbjct: 32 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAKITSEQLRKAQL 91
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +RDL+ + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 92 QVDRFAVELEQSRDLNSTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 151
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 152 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYQAVSREVKEILTDYDPNFMAMSLDEAYLNI 211
Query: 209 TEVCRER 215
T+ ER
Sbjct: 212 TKHLEER 218
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/272 (43%), Positives = 169/272 (62%), Gaps = 22/272 (8%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 352
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 353 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 411
Query: 335 TNTPQARF--------RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
T+ RKS+S ERTFS Y E+ L+ D+QK+GL+GRT+
Sbjct: 412 THLASLFIFFISRDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTV 471
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF 440
T+KLK +FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F
Sbjct: 472 TIKLKNVNFEVKTRASTVSTVVSTAEEIFVIAKELLRTEIDADFPQPLRLRLMGVRLSGF 531
Query: 441 -NEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 471
NE++ + Q+++ F+ G+ + G
Sbjct: 532 PNEEEKKH----QQRSIIGFLQPGNQALSATG 559
>gi|429750894|ref|ZP_19283893.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 332 str.
F0381]
gi|429163655|gb|EKY05858.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 332 str.
F0381]
Length = 354
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 204/346 (58%), Gaps = 10/346 (2%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAF+A+VE L P L+GK +AVG ++ TA+YEARR+GVR+A+ G AR+LCP L
Sbjct: 1 MDAFFASVEQLDFPELRGKAIAVGGAERRGVVATASYEARRYGVRSAISGAQARRLCPHL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFVP F +Y S R +F Y SLDEAYLD+T ++ S IA+E+R
Sbjct: 61 IFVPPRFERYKEISLQIRGIFHDYTDLVEPLSLDEAYLDVT-TNKKNNPSATLIAQEIRQ 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
++EE GLT SAG++ N+ +AK+ SD KPNGQ + D V F+ L +RK GIGK
Sbjct: 120 RIFEETGLTASAGISVNKFVAKIASDFRKPNGQTTITADE--VQDFLDVLDVRKFYGIGK 177
Query: 289 VTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISS 348
VT + ++ GI +++ +K ++ +F + G+ R RKS+ +
Sbjct: 178 VTAQKMYEL-GIFKGKDLREKSLAFLERNFGNSGLYFYELSRGIHRAEVQPFRIRKSVGA 236
Query: 349 ERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKY 407
E TF+ + + L+ IAE ++ +Q++ + GRT+TLK+K + F V+TR+ TL ++
Sbjct: 237 EHTFAENFTSEIYMEEALSAIAEDVARRLQRQEVAGRTITLKIKYSDFTVQTRSKTLAEF 296
Query: 408 ISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQF-NEDKVRAPSDP 451
ISS E+I+ +A LL E L S+RL+G+ V+ NE++ P P
Sbjct: 297 ISSQEEIVLYARELLYQERLKESVRLLGISVSHLNNEEREDTPKKP 342
>gi|156121161|ref|NP_001095728.1| DNA polymerase kappa [Bos taurus]
gi|151555691|gb|AAI49025.1| POLK protein [Bos taurus]
gi|296483771|tpg|DAA25886.1| TPA: DNA-directed DNA polymerase kappa [Bos taurus]
Length = 877
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + AK+TS + Q
Sbjct: 32 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAKITSEQLRKAQL 91
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +RDL+ + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 92 QVDRFAVELEQSRDLNSTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 151
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 152 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYQAVSREVKEILTDYDPNFMAMSLDEAYLNI 211
Query: 209 TEVCRER 215
T+ ER
Sbjct: 212 TKHLEER 218
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 170/264 (64%), Gaps = 14/264 (5%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 352
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 353 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 411
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QK+GL+GRT+T+KLK +
Sbjct: 412 THLARDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTVTIKLKNVN 471
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 447
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE++ +
Sbjct: 472 FEVKTRASTVSTVVSTAEEIFVIAKELLRTEIDADFPQPLRLRLMGVRLSGFPNEEEKKH 531
Query: 448 PSDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ G+ + G
Sbjct: 532 ----QQRSIIGFLQPGNQALSATG 551
>gi|85816953|gb|EAQ38137.1| DNA polymerase IV [Dokdonia donghaensis MED134]
Length = 370
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 146/349 (41%), Positives = 213/349 (61%), Gaps = 16/349 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI---CTANYEARRFGVRAAMPGFIA 161
+ +HVDMDAFYA+VE L NP L+GK +AVG A+YEAR++GVR+AM G +A
Sbjct: 7 KKIIHVDMDAFYASVEQLDNPDLRGKAIAVGGGGERGVVSAASYEARKYGVRSAMAGALA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
RKLCP+LIFV T+F +Y S R VF ++ SLDEAYLD+TE + G+ S
Sbjct: 67 RKLCPDLIFVKTNFERYREVSAQIRSVFHEFTDLVEPLSLDEAYLDVTE--NKVGMPSAT 124
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA +R + E+ GL SAG++ N+ +AKV SDINKPNGQ +P + V+TF+ L I
Sbjct: 125 VIASWIRQCIKEKTGLNASAGISINKFIAKVASDINKPNGQKTIPPEE--VITFLEELDI 182
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+K GIGK T + + GI T ++ L+ L F S A ++ + G+ +
Sbjct: 183 KKFYGIGKKTAEKMY-LHGIFTGMDLKLKSKEYLSDNFGKSGA-YYYDIVRGIQHSEVKP 240
Query: 340 ARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+++ERTF ++T + +L KL IAE + ++K + G+T+TLK+K + F +
Sbjct: 241 NRIRKSLAAERTFRENITSEIFML-EKLEHIAEEVERRLEKSKVAGKTITLKIKYSDFTL 299
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN-EDK 444
+TR+ TL Y+ S E IL+ A LL E + S+RL+G+ ++ N ED+
Sbjct: 300 QTRSKTLDLYVRSKEIILETAKDLLYQEKMKNSVRLLGISLSNLNTEDR 348
>gi|56160406|gb|AAV80817.1| polymerase kappa isoform 1 [Mus musculus]
Length = 533
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 204 TQHLQER 210
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/214 (49%), Positives = 142/214 (66%), Gaps = 1/214 (0%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVS 429
EV+TRA T+ IS++E+I A LL+ E+ VS
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVS 498
>gi|56160424|gb|AAV80826.1| polymerase kappa isoform 10 [Mus musculus]
Length = 434
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 204 TQHLQER 210
>gi|408371276|ref|ZP_11169044.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
gi|407743237|gb|EKF54816.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
Length = 367
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 137/354 (38%), Positives = 205/354 (57%), Gaps = 12/354 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE L P L+GK +AVG ++ A+Y+AR FGVR+AM G +A
Sbjct: 8 RKIIHVDMDAFYASVEQLDFPELRGKALAVGGNEVRGVVSAASYQARAFGVRSAMSGVLA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCPELIFVP F +Y S R +F +Y SLDEAYLD+TE ++ S
Sbjct: 68 KRLCPELIFVPPRFDRYREISMKIRAIFLEYTDLVEPLSLDEAYLDVTE-NKKGNPSATL 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA ++R ++++ GL CSAG++ N+ +AK+ SD NKPNGQ + D V+ F+ +L IR
Sbjct: 127 IASQIRERIFQQTGLRCSAGISINKFVAKIASDYNKPNGQKTVEPDE--VIPFLEALDIR 184
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
K G+GKVT + + GI T ++ +K + + +V G+ ++ R
Sbjct: 185 KFYGVGKVTAQKMYQL-GIFTGLDLKKKPIEFLNEHFGKSGSLYYNVVRGIHNSPVKPDR 243
Query: 342 FRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
KS+ +ERTF+ + + +L ++ L ++K + G+T+TLK+K + F ++TR
Sbjct: 244 VPKSVGAERTFTENLSSEVFMLERLEHLSVELEQRLRKNKVAGKTITLKIKYSDFSLQTR 303
Query: 401 AVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSDPTQ 453
+ TL YIS IL A+ LL E L S+RL+G+ + N D AP P Q
Sbjct: 304 SKTLDFYISDKSLILDTATELLYQEKLHNSVRLLGISLGNLNTD---APEIPVQ 354
>gi|56160416|gb|AAV80822.1| polymerase kappa isoform 6 [Mus musculus]
Length = 237
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 204 TQHLQER 210
>gi|393779062|ref|ZP_10367315.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|392610848|gb|EIW93608.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
Length = 353
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 133/338 (39%), Positives = 202/338 (59%), Gaps = 11/338 (3%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE L P L+GK +AVG ++ TA+YEAR+FGVR+A+ G ARKLCP L
Sbjct: 1 MDAFYASVEQLDYPELRGKAIAVGGGEPRGVVATASYEARKFGVRSAISGAQARKLCPHL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFV F +Y S R +F +Y SLDEAYLD+T V ++ S IA+E+R
Sbjct: 61 IFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYLDVT-VNKKGNPSATLIAQEIRQ 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
++++ GLT SAG++ N+ +AK+ SD KPNGQ + V F+ L +RK GIGK
Sbjct: 120 RIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITESE--VQNFLDRLDVRKFYGIGK 177
Query: 289 VTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISS 348
VT + + GI + +K ++ +++ + G+ + R RKS+ +
Sbjct: 178 VTAEKMYQL-GIFKGRNLREKSLEFLERNFGNSGNYYYELARGIHRSEVQPFRIRKSVGA 236
Query: 349 ERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK 406
E TF+ +T + +L R+L IAE ++ + K+ + G+T+TLK+K ++F V+TR+ TL+
Sbjct: 237 EETFAENLTSEVYML-RELDHIAEDVARRLDKQQVAGKTVTLKIKYSNFTVQTRSKTLKD 295
Query: 407 YISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 443
+ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 296 FISSKDDILLHIKELLYQERPAESVRLLGISLSHLNNE 333
>gi|15928983|gb|AAH14955.1| POLK protein [Homo sapiens]
Length = 313
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
>gi|426384398|ref|XP_004058756.1| PREDICTED: DNA polymerase kappa isoform 1 [Gorilla gorilla gorilla]
Length = 871
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIAR+LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIARRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 449 SDPTQKTLTNFMTSGHAS 466
Q+++ F+ +G+ +
Sbjct: 525 Q---QRSIIGFLQAGNQA 539
>gi|431907837|gb|ELK11444.1| DNA polymerase kappa [Pteropus alecto]
Length = 868
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGSK++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSKFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
AD+ +ELE RDL+ + +HVDMDAFYAAVE NP LK KP+AVG+ SM+ T+NY AR
Sbjct: 85 QADRFAMELEQNRDLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSSSMLTTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI +P +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIIPPNFDKYRAVSREVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 205 TKHLQER 211
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 171/265 (64%), Gaps = 16/265 (6%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 THLARDAERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 446
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F EDK
Sbjct: 465 FEVKTRAYTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRLSSFPNEEDKKH 524
Query: 447 APSDPTQKTLTNFMTSGHASKKIVG 471
Q+++ +F+ +G+ + G
Sbjct: 525 Q-----QRSIIDFLQAGNQTLSATG 544
>gi|134105174|pdb|2OH2|A Chain A, Ternary Complex Of Human Dna Polymerase
gi|134105175|pdb|2OH2|B Chain B, Ternary Complex Of Human Dna Polymerase
gi|240104255|pdb|2W7O|A Chain A, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
gi|240104256|pdb|2W7O|B Chain B, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
gi|240104261|pdb|2W7P|A Chain A, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
gi|240104262|pdb|2W7P|B Chain B, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
gi|257472029|pdb|3IN5|A Chain A, Structure Of Human Dna Polymerase Kappa Inserting Datp
Opposite An 8-Oxog Dna Lesion
gi|257472030|pdb|3IN5|B Chain B, Structure Of Human Dna Polymerase Kappa Inserting Datp
Opposite An 8-Oxog Dna Lesion
Length = 508
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 7 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 66
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 67 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 126
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 127 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 186
Query: 209 TEVCRER 215
T+ ER
Sbjct: 187 TKHLEER 193
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 269 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 327
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 328 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 386
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 387 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 446
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 446
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 447 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDR 504
>gi|281202967|gb|EFA77168.1| UMUC-like DNA-repair protein [Polysphondylium pallidum PN500]
Length = 481
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 128/403 (31%), Positives = 224/403 (55%), Gaps = 10/403 (2%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+ VD ++ ++ + ++G+ + E R E QQ I + ++ P Y++
Sbjct: 4 KAGMESVDLNEINMLLEQFTEGTHFQEKIIRDELKTQQIISESLEKLKEV--PDTDEYRE 61
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK + +L ++DL+R++L++DMDA+YA VE + +PS++G P+AVG+M M+ T+NY +R
Sbjct: 62 KVDKYLEQLVESKDLTRTFLYIDMDAYYALVEEMDDPSIRGLPVAVGSMDMLVTSNYLSR 121
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
++GVR+ MPG A LCP L+ P+ +Y +D R+++ ++DP+F++ SLDE +DI
Sbjct: 122 KYGVRSRMPGMFALSLCPTLVIKPSRMDRYREVADTLREIYSEFDPDFVSKSLDEGCMDI 181
Query: 209 TEVCRERG-ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 267
T+V + +S +E+A ++ ++E LTC GVAP+ LLAK+CS++NKPNG FVL D
Sbjct: 182 TKVLQNNPHVSPLEMARLCQSKIFERTTLTCGVGVAPSPLLAKLCSEVNKPNGYFVLDKD 241
Query: 268 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLS 327
+ F++ I+K+ GIGK+ + +L + G++T E++ L + + D
Sbjct: 242 ETKMKEFLARTSIKKVPGIGKLRQQLLESL-GLDTIEDIYDNRYELYHLLPTTYMDILFK 300
Query: 328 VGLGLGSTNTPQARF----RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 383
+ P + F R IS E+ D+ + + ++ + + KE +
Sbjct: 301 HAQSVPIFPEPSSFFRLKKRNMISKEKNCKEIYDEKEMDDLMKDLYMSAISTVLKENVFP 360
Query: 384 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 426
L +K+ F+V +L K S+ E +L +L L
Sbjct: 361 TGLIIKMVDFKFKVTNHTFSLTK--SAKEPVLDEDGQVLNDSL 401
>gi|421854046|ref|ZP_16286683.1| DNA polymerase IV [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
gi|371477685|dbj|GAB31886.1| DNA polymerase IV [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
Length = 359
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 142/344 (41%), Positives = 198/344 (57%), Gaps = 18/344 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP+LKG+P+AVG ++ A+YEAR+FGVR+AMP A
Sbjct: 6 RRIIHIDMDAFYASVEQRDNPALKGQPVAVGRCQERGVVAAASYEARKFGVRSAMPSVQA 65
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP LIFVP F Y S +F +Y P SLDEAYLD+T R S
Sbjct: 66 QRKCPHLIFVPPRFDVYRAVSAQIHAIFARYTPLIQPLSLDEAYLDVTHPLLPRP-SATA 124
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KPNGQFV+P +R F++SLP+
Sbjct: 125 IAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGE--DFVASLPVN 182
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP- 338
G+G T +R GI+T + L++ SL L F + A ++ G+ G + P
Sbjct: 183 AFHGVGPATARRMR-TLGIHTGAD-LRRFSLDILRQHFGKAAAFYY---GIARGKDDRPV 237
Query: 339 -QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ E TF A L+ L E+A + A QK L GRT+TLKL+ F+
Sbjct: 238 EPNRPRKSLGKEVTFEQDLRTPAELHAALRELASKVWAGCQKRNLTGRTITLKLRYTDFD 297
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
TR+++L + E + + A LL LPV +RL+G+ ++
Sbjct: 298 QCTRSLSLADPVQDEEILAEMACRLLAPLLPVRAPVRLLGITLS 341
>gi|363582785|ref|ZP_09315595.1| DNA polymerase IV 2 [Flavobacteriaceae bacterium HQM9]
Length = 365
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 195/327 (59%), Gaps = 12/327 (3%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPG 158
D SR +HVDMDAFYA+VE NP LKGK +AVG S +I A+YEAR+FGVR+AM
Sbjct: 4 DTSRKIIHVDMDAFYASVEQRDNPDLKGKAIAVGGSSDRGVISAASYEARKFGVRSAMSS 63
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS 218
+A+KLCPELIFV F +Y S R +F +Y SLDEAYLD+T V ++ S
Sbjct: 64 VVAKKLCPELIFVRHHFERYKEVSQQVRAIFFEYTDLVEPLSLDEAYLDVT-VNKKGNPS 122
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISS 277
IAEE+R + ++ GLT SAG++ N+ +AKV SD NKPNGQ V P + V+ F+ +
Sbjct: 123 ATLIAEEIREKILQKTGLTASAGISINKFIAKVASDYNKPNGQKTVHPTE---VLDFLEA 179
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTN 336
L I+K G+GKVT+ + GI T ++ K + L F S A ++ V G+ +
Sbjct: 180 LDIKKFYGVGKVTQKKMY-ALGIYTGADLKTKTEAYLTENFGKSGAHYYRIVR-GIHHSA 237
Query: 337 TPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKSI +ERTF+ + + +L E++E L+ + K + G+T+TLK+K + F
Sbjct: 238 VKPHRTRKSIGAERTFNENLASEIFMEERLKELSEELARRLTKSDVAGKTITLKIKYSDF 297
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLL 422
V TR+ T+ YI + + + A LL
Sbjct: 298 SVHTRSKTIAYYICDANLLFEVAKELL 324
>gi|327404453|ref|YP_004345291.1| DNA polymerase IV [Fluviicola taffensis DSM 16823]
gi|327319961|gb|AEA44453.1| DNA polymerase IV [Fluviicola taffensis DSM 16823]
Length = 370
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 136/354 (38%), Positives = 209/354 (59%), Gaps = 15/354 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM---ICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE + NP L GKP+AVG + + A+YEAR+FGV++AMP +A
Sbjct: 17 RKIIHVDMDAFYASVEQMDNPDLIGKPIAVGGSKLRGVVAAASYEARKFGVKSAMPSSMA 76
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
+LCPELIFV F +Y S R +F +Y SLDEA+LD+T ++GI S
Sbjct: 77 ARLCPELIFVRPRFDRYQEISHQIRAIFYEYTDLVEPLSLDEAFLDVT--TNKKGIQSAT 134
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTFISSLP 279
+A+E+R +Y+E GL SAG++ N+ AKV SD+NKPNGQ V+P + V TF+ LP
Sbjct: 135 LLAKEIRERIYQEVGLRASAGISINKFTAKVASDVNKPNGQLTVIPEE---VETFLEKLP 191
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTP 338
I + GIGKVT ++++ G+ T +++ QK L F F+ ++ G+ +
Sbjct: 192 IDRFFGIGKVTATKMKEL-GVRTGKDLKQKSIDFLNQHFGKQGLHFY-NIVRGIQYSKVK 249
Query: 339 QARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS + E T FS K + L +IA L M+K+ + G+ +++K+K A F
Sbjct: 250 PNRIRKSFAVEHTYFSEIYSKRKILENLEQIALDLERRMKKKSVSGKCVSIKIKYADFTQ 309
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFNEDKVRAPSD 450
+TRA T+ +Y+S+ E+ +L++ E+ +RL+G+ ++ N ++ D
Sbjct: 310 QTRAKTVLEYMSTKEEFFPLIELLVEHLEINKPVRLLGISFSKLNTEETELDQD 363
>gi|154340461|ref|XP_001566187.1| putative DNA polymerase kappa [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063506|emb|CAM39687.1| putative DNA polymerase kappa [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 754
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 167/507 (32%), Positives = 246/507 (48%), Gaps = 73/507 (14%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVIS 84
+ N KAG+ VDK K + ++ +SK S ++ NEERK +++IE + + + V
Sbjct: 145 FDNTKAGLHAVDKAKTEALITALSKNSDFYINEERKAQRRKRQIEGLLVKTRQYEGNVCG 204
Query: 85 HYQ--KVADKRILELEATRDLSRS----WLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS 138
+ + + +LEA+ ++ RS ++HVDMD FYAAVE NP P+ VG+M+
Sbjct: 205 QPDVFRQLQRDVADLEASFEMYRSFDSIYVHVDMDMFYAAVEMKKNPQYAEVPLGVGSMA 264
Query: 139 MICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMA 198
M+ T NY AR++GVR+ MPGFI +LCP+L+ VPTDF S + V YDP
Sbjct: 265 MLSTTNYLARQYGVRSGMPGFIGMRLCPQLVIVPTDFAACRVESAKFKGVVRNYDPAAQV 324
Query: 199 ASLDEAYLDITEVCRERGISGI----------EIAEELRTSVYEEAGLTCSAGVAPNRLL 248
+DE + + + + + I EE R V E GLT SAG+AP L
Sbjct: 325 LGMDEIMMRLDDYLAQHHMDATTHAERFDVAERIIEECRRRVAEVTGLTASAGIAPTPTL 384
Query: 249 AKVCSDINKPNGQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML 307
AK+ SD KPNGQF V R AVM +++S+P+R++ GIGK E IL GI+T E+
Sbjct: 385 AKMASDYKKPNGQFAVRLFSREAVMDYLASIPVRRVPGIGKSRESILAG-LGIHTLGEVY 443
Query: 308 QKGSLLCAVFSHSTADFFLSVGLGLG----------------STNTPQAR---------F 342
Q+ L + + T +F L+ +G+G +T T A
Sbjct: 444 QQRHRLFYILTRKTYEFLLASAMGVGGMYDSLEAAPPSSAGTTTKTVAALDGESNEDDWR 503
Query: 343 RKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
RKS+ ERTF + E +A+ + L + E L A E L + LKLK SF V+
Sbjct: 504 RKSVGQERTFYKLKNRMELQAIAHMNLRQSHETLVA----EDLLCSQVVLKLKHRSFHVK 559
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV-----SLRLIGLRVTQFNED---------- 443
+ +L Y ++D L LPV RL+G+R+ +
Sbjct: 560 QHSKSLNLY---TDDYEVLRRALDDLLLPVVDDFAKFRLLGIRLEKLRRRPQNSGAGGAI 616
Query: 444 ----KVRAPSDPTQKTLTNFMTSGHAS 466
K A ++ TQ TL++F AS
Sbjct: 617 ILTVKSTAEAESTQPTLSHFFARQSAS 643
>gi|225012038|ref|ZP_03702475.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-2A]
gi|225003593|gb|EEG41566.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-2A]
Length = 366
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 208/357 (58%), Gaps = 15/357 (4%)
Query: 98 EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI---CTANYEARRFGVRA 154
E T D +R +HVDMDAF+AAVE L +P +GKP+AVG A+YEAR++GVR+
Sbjct: 4 EFTFDSTRKIIHVDMDAFFAAVEQLDHPKWRGKPLAVGGGGDRGVVSAASYEARKYGVRS 63
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
A+ G IA++LCP LIF PT F +Y S++ R VF +Y SLDEA+LD++E
Sbjct: 64 ALSGVIAKRLCPHLIFAPTRFDRYKEISEIVRSVFLEYTSLVEPLSLDEAFLDVSEYP-- 121
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 274
S +A+E+R ++ + GLT SAG++ N+ LAK+ SD NKPNGQ +P + V++F
Sbjct: 122 ---SATMVAQEIREKIFSKTGLTASAGISINKFLAKIASDWNKPNGQKTIPPEE--VLSF 176
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLG 333
+ +L ++K GIG T+ + + GI + ++ LQ + L F S +F V G+
Sbjct: 177 LENLDVKKFHGIGAKTKLKMYGL-GIYSGNDLKLQSAAFLEKHFGKSGIHYF-KVVRGIH 234
Query: 334 STNTPQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
++ R KS+ +ERTF + + KL I+ +L +K + G+T+TLK+K
Sbjct: 235 TSEVKPHRIPKSLGAERTFETNLSSEVYIEEKLKLISALLEKRTKKNKVAGKTITLKIKY 294
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAP 448
+ F +TR+ T Y+SS E I + + LL E L S+RLIG+ ++ N K P
Sbjct: 295 SDFIQQTRSKTGTLYLSSKELIFEESKKLLYQEKLLNSVRLIGISLSNLNTSKKEIP 351
>gi|426232466|ref|XP_004010243.1| PREDICTED: DNA polymerase kappa [Ovis aries]
Length = 871
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +RDL+ + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRDLNSTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLTTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYQAVSREVKEILTDYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 170/264 (64%), Gaps = 14/264 (5%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QK+GL+GRT+T+KLK +
Sbjct: 405 THLARDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 447
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE++ +
Sbjct: 465 FEVKTRASTVPAVVSTAEEIFVIAKELLRTEIDADFPHPLRLRLMGVRLSGFPNEEEKKH 524
Query: 448 PSDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ G+ + G
Sbjct: 525 ----QQRSIIGFLQPGNQALPATG 544
>gi|420148930|ref|ZP_14656115.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394754419|gb|EJF37809.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 335
str. F0486]
Length = 353
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 133/338 (39%), Positives = 203/338 (60%), Gaps = 11/338 (3%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE L P L+GK +AVG ++ TA+YEAR+FGVR+A+ G ARKLCP L
Sbjct: 1 MDAFYASVEQLDYPELRGKAIAVGGGEPRGVVATASYEARKFGVRSAISGAQARKLCPHL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFV F +Y S R +F +Y SLDEAYLD+T V ++ S IA+E+R
Sbjct: 61 IFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYLDVT-VNKKSNPSATLIAQEIRQ 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
++++ GLT SAG++ N+ +AK+ SD KPNGQ + V F+ L +RK GIGK
Sbjct: 120 RIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITE--AEVQDFLDRLDVRKFYGIGK 177
Query: 289 VTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISS 348
VT + + GI +++ +K ++ ++ + G+ + R RKS+ +
Sbjct: 178 VTAEKMYQL-GIFKGKDLREKSLEFLERNFGNSGHYYYELSRGIHRSEVQPFRIRKSVGA 236
Query: 349 ERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK 406
E TF ++T + +L R+L IAE ++ + K+ + G+T+TLK+K ++F V+TR+ TL+
Sbjct: 237 EETFVENLTSEVYML-RELDHIAEDVARRLDKQQVAGKTVTLKIKYSNFTVQTRSKTLKD 295
Query: 407 YISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 443
+ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 296 FISSKDDILLHIKELLYQERPAESVRLLGISLSHLNNE 333
>gi|261334859|emb|CBH17853.1| DNA polymerase IV, putative [Trypanosoma brucei gambiense DAL972]
Length = 572
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 151/462 (32%), Positives = 245/462 (53%), Gaps = 32/462 (6%)
Query: 10 SSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIE 69
S+S P +Q T+ N KAGM VDKE+V+ ++ +G+ + NE+R ++++
Sbjct: 34 SASRQPTAFQ--LTLDCN-KAGMGNVDKERVEAIIRGAGEGTPFLLNEQRLVEGREKQLR 90
Query: 70 HMRARCAKLTSPVISHYQKVADKRILEL---------EATRDLSRSWLHVDMDAFYAAVE 120
++ R + L + ++ + A ++ EL EATR L +++H+DMD FYAAVE
Sbjct: 91 ELK-RKSSLFTQLLGGERNAAQRKQWELKVSKIEQELEATRRLG-TYIHLDMDMFYAAVE 148
Query: 121 TLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTY 180
+P P+A+GT + + TANY AR GVR +MPGF+A K+CP L+ +P DF Y
Sbjct: 149 IKKHPEYATIPLAIGTRTRLQTANYVARGRGVRCSMPGFLALKICPNLLILPPDFDSYNE 208
Query: 181 YSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRERGISGIE-IAEELRTSVYEEAGLTC 238
S+ R++ +YDPN+++ LDE L+++ + R G E +A ELR V+ E LT
Sbjct: 209 ESNTVRRIVAEYDPNYISFGLDELTLEVSAYIERFEGTKTAEDVASELRVRVFGETKLTA 268
Query: 239 SAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDV 297
SAG+ P LAK+ S+INKPNGQ L + R VMT++ L +R + G+GKVTE +L+
Sbjct: 269 SAGIGPTAALAKIASNINKPNGQHDLNLHTREDVMTYVRDLGLRSVPGVGKVTEALLKG- 327
Query: 298 FGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-------GSTNT-----PQARFRKS 345
GI T ++ + LC + ++ F L +G+ + NT RK+
Sbjct: 328 LGITTLGDIHDRRVELCYILHNNLFRFLLGASIGIMQWPDAATAANTENCEGATGEQRKA 387
Query: 346 ISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQ 405
ISSER+ + K + + + +M+K + R ++L+++ AS+ + +L
Sbjct: 388 ISSERSITTPRTKEGMQEMVDTVFNGAYEEMRKSEMMCRRISLRIRWASYRYQQYTKSLI 447
Query: 406 KYISSSEDILKHASVLL--KAELPVSLRLIGLRVTQFNEDKV 445
+Y S + + LL A + L+G+R KV
Sbjct: 448 QYSDDSATLRRAVDGLLLPHAAKYSEISLLGVRFLDLISAKV 489
>gi|375012202|ref|YP_004989190.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
gi|359348126|gb|AEV32545.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
Length = 361
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 137/348 (39%), Positives = 204/348 (58%), Gaps = 15/348 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L GKP+AVG ++ A+YEAR++G+R+AM IA
Sbjct: 8 RKIIHVDMDAFYASVEQRDNPELMGKPVAVGGSRERGVVAAASYEARKYGIRSAMASSIA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
+ CP +IFV F KY S R++F +Y SLDEAYLD+TE ++GI +
Sbjct: 68 YRKCPHIIFVKPHFEKYKEVSKQIREIFFEYTDLVEPLSLDEAYLDVTE--NKKGIATAT 125
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLP 279
IA+E+R ++EE L+ SAG++ N+ +AKV SDINKPNGQ ++P+D V+ F+ +LP
Sbjct: 126 RIAKEIRQRIWEETQLSASAGISINKFVAKVASDINKPNGQKTIMPDD---VIPFLENLP 182
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTP 338
I+K GIG+ T ++ + GI+ ++ Q LL F S ++ ++ GL +
Sbjct: 183 IKKFYGIGEKTAEKMKKL-GIHFGRDLKQWDLPLLVREFGKSGTHYY-NIVRGLQKSTVK 240
Query: 339 QARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKSI +ERT F ++ L +L +I +L ++ G+T+TLKLK+ FE
Sbjct: 241 PDRIRKSIGAERTFFDDIHAESDLKEELEKIMTILHKRIESSEASGKTVTLKLKSFDFEQ 300
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIGLRVTQFNEDK 444
TR+ T YI+S E+I LL P +RL+G+ ++ D+
Sbjct: 301 HTRSFTFDHYINSQEEIFDKIIQLLYQPFPEKPVRLLGITLSNLKNDE 348
>gi|149059108|gb|EDM10115.1| polymerase (DNA directed) kappa, isoform CRA_a [Rattus norvegicus]
gi|149059109|gb|EDM10116.1| polymerase (DNA directed) kappa, isoform CRA_a [Rattus norvegicus]
Length = 851
Score = 225 bits (573), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDRFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKEKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 204 TQHLQER 210
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 118/255 (46%), Positives = 163/255 (63%), Gaps = 10/255 (3%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFI 345
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS S+ +FL V LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLL-ALGIVTCTELYQQRALLSLLFSESSWHYFLHVALGLGST 404
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK F
Sbjct: 405 DLARDGERKSMSVERTFSEINKTEEQYSLCQELCTELAHDLQKEGLKGRTVTIKLKNVDF 464
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 449
EV+TRA T+ IS++EDI A LL+ E+ P+ LRL+G+R++ F+ D R
Sbjct: 465 EVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGSPQPLRLRLMGVRMSTFSNDDDRKHQ 524
Query: 450 DPTQKTLTNFMTSGH 464
Q+++ F+ +G+
Sbjct: 525 ---QRSIIGFLQAGN 536
>gi|56160432|gb|AAV80830.1| polymerase kappa isoform 4 [Homo sapiens]
Length = 461
Score = 224 bits (572), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 382
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLK 452
>gi|401424996|ref|XP_003876983.1| putative DNA polymerase kappa [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493227|emb|CBZ28512.1| putative DNA polymerase kappa [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 753
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 160/491 (32%), Positives = 246/491 (50%), Gaps = 65/491 (13%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVIS 84
+ + KAG+ +K K + ++ E+SK S ++ NEERK Q+++E + + + + V S
Sbjct: 145 FDDRKAGLCSAEKAKTEALIKELSKNSSFYINEERKAQQRQRQVEGLLVKTRQYEASVHS 204
Query: 85 HYQ--KVADKRILELEATRDLSRS----WLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS 138
H + + + +LEA + RS + H+DMD F+AAVE NP P+ +G+MS
Sbjct: 205 HPDVFRQLQRDVADLEAIFERCRSFDSIYAHMDMDMFFAAVEMKKNPQYAEVPLGIGSMS 264
Query: 139 MICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMA 198
M+ T NY AR++GV++ MPGFI +LCP+L+ VPTDF S + V YDP+
Sbjct: 265 MLSTTNYVARKYGVQSGMPGFIGMRLCPQLVIVPTDFAACRVESAKFKGVVRDYDPDAQL 324
Query: 199 ASLDEA-----------YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRL 247
+DE ++D T R ++ + EE R + E GLT SAG+AP
Sbjct: 325 LGMDEVMMCLDDYLARHHVDATTHARRFDVAE-RVIEECRRRIAEATGLTVSAGIAPTPT 383
Query: 248 LAKVCSDINKPNGQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM 306
LAK+ S+ NKPNGQF V R AVM +++S+P+R++ GIGK E +L + GI T E+
Sbjct: 384 LAKMASNYNKPNGQFAVRLFSREAVMNYLASIPVRQVPGIGKSRESVLAGL-GIRTLGEV 442
Query: 307 LQKGSLLCAVFSHSTADFFLSVGLGLGST-----NTPQARF------------------- 342
++ L + + T +F L+ +G+G P +
Sbjct: 443 YEQRHRLFYILTRKTYEFLLASSIGIGGMYDSLETAPSSSAGATAGQTVAAMDGASNEDD 502
Query: 343 --RKSISSERTFSVTED----KALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
RKS+ ERTF + +A+ Y+ L E L+ +EGL + LKLK SF
Sbjct: 503 GGRKSVGHERTFYKLTNPMALQAIAYKNLRRSHETLA----EEGLLCSQVVLKLKRRSFH 558
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV-----SLRLIGLRVTQFNEDKVRAPSDP 451
V+ + +L Y E + + LL LPV RL+G+R+ + + R SD
Sbjct: 559 VKQHSKSLNVYTDDHEVLRRALDELL---LPVVGDFAEFRLLGVRLEKL---RRRPQSDG 612
Query: 452 TQKTLTNFMTS 462
T T +TS
Sbjct: 613 TGGATTLTVTS 623
>gi|256819502|ref|YP_003140781.1| DNA-directed DNA polymerase [Capnocytophaga ochracea DSM 7271]
gi|256581085|gb|ACU92220.1| DNA-directed DNA polymerase [Capnocytophaga ochracea DSM 7271]
Length = 353
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 133/338 (39%), Positives = 202/338 (59%), Gaps = 11/338 (3%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE L P L+GK +AVG ++ TA+YEAR+FGVR+A+ G ARKLCP L
Sbjct: 1 MDAFYASVEQLDYPELRGKAIAVGGGEPRGVVATASYEARKFGVRSAISGAQARKLCPHL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFV F +Y S R +F +Y SLDEAYLD+T V ++ S IA+E+R
Sbjct: 61 IFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYLDVT-VNKKSNPSATLIAQEIRQ 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
++++ GLT SAG++ N+ +AK+ SD KPNGQ + V F+ L +RK GIGK
Sbjct: 120 RIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITE--AEVQDFLDRLDVRKFYGIGK 177
Query: 289 VTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISS 348
VT + + GI ++ +K ++ ++ + G+ + R RKS+ +
Sbjct: 178 VTAEKMYQL-GIFKGRDLREKSLEFLERNFGNSGHYYYELSRGIHRSEVQPFRIRKSVGA 236
Query: 349 ERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK 406
E TF ++T + +L R+L IAE ++ + K+ + G+T+TLK+K ++F V+TR+ TL+
Sbjct: 237 EETFPENLTSEVYML-RELDHIAEDVARRLDKQQVAGKTVTLKIKYSNFTVQTRSKTLKD 295
Query: 407 YISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 443
+ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 296 FISSKDDILLHIKELLYQERPAESVRLLGISLSHLNNE 333
>gi|374599088|ref|ZP_09672090.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|423324227|ref|ZP_17302068.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
gi|373910558|gb|EHQ42407.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|404608618|gb|EKB08077.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
Length = 357
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 206/352 (58%), Gaps = 17/352 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
++R +H+DMDAFYA+VE L NP L+GK + VG S ++ A+YEAR++GVR+AM G
Sbjct: 1 MNRKIIHIDMDAFYASVEQLDNPELRGKAIVVGGSSERGVVAAASYEARQYGVRSAMSGI 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-S 218
+A+K CP LIFVP F +Y S R+VF +Y +LDEA+LD+TE + G S
Sbjct: 61 LAKKKCPHLIFVPPRFDRYKEISRQIRQVFHEYTDLVEPLALDEAFLDVTE--NKIGCPS 118
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
IA+E+R ++E LT SAG++ N+ LAKV SD NKPNGQ + + V F+ +L
Sbjct: 119 ATLIAQEIRQKIFERTQLTASAGISINKFLAKVASDYNKPNGQKTINPEE--VEAFLEAL 176
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNT 337
I+K GIGK T + FGI T ++ K L F + ++ V G N+
Sbjct: 177 EIKKFFGIGKKTADRMYH-FGIFTGRDLKAKSIDFLEEHFGKAGKAYYYIVR---GIHNS 232
Query: 338 PQA--RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
P + R KS+ +ERTF + L KLA I E LS ++K+GL G+T+TLK+K A
Sbjct: 233 PVSPDRLTKSVGTERTFDENLSSEVYLENKLAHIVEELSLRLRKQGLAGKTVTLKIKYAD 292
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKV 445
F +TR+ T +I+ + IL A LL E L S+RLIG+ ++ N KV
Sbjct: 293 FVQQTRSTTFPYFIADAGIILDCAKELLYQEKLQNSVRLIGVSLSNLNNIKV 344
>gi|332879162|ref|ZP_08446863.1| DNA polymerase IV [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332682962|gb|EGJ55858.1| DNA polymerase IV [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 353
Score = 224 bits (572), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 132/339 (38%), Positives = 208/339 (61%), Gaps = 13/339 (3%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE L P L+GK +AVG ++ TA+YEAR++GV +AM G +ARK CP L
Sbjct: 1 MDAFYASVEQLDFPYLRGKAIAVGGGEARGVVATASYEARQYGVHSAMSGVLARKRCPHL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFVP F +Y S R +F +Y SLDEAYLD+T + S IA+E+R
Sbjct: 61 IFVPPRFERYKEISRHIRSIFHRYTDLVEPLSLDEAYLDVTH-NKVGNPSATLIAQEIRQ 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
+++ E GLT SAG++ N+ +AK+ SD+NKPNGQ + D + F+ +L ++K GIGK
Sbjct: 120 AIFAETGLTASAGISINKFIAKIASDVNKPNGQKTVTQDE--IQDFLDALNVKKFYGIGK 177
Query: 289 VTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSIS 347
VT + G+ T +++ QK + L F +S ++ + G+ + R RKS+
Sbjct: 178 VTAEKMY-ALGVFTGKDLRQKSLAFLERNFGNSGKHYY-QLARGIHNGEVQPFRIRKSVG 235
Query: 348 SERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQ 405
+E+TF+ +T + +L ++L IA ++ + ++ + G+TLT+K+K + F ++TR+ TL+
Sbjct: 236 AEQTFAENLTSEIYML-KELDSIASEVAMRLAQQKVAGKTLTIKIKYSDFSIQTRSKTLK 294
Query: 406 KYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 443
YISS E+I+ + S LL + L S+RL+G+ ++ N D
Sbjct: 295 DYISSKEEIMLYISELLYQDRLSDSVRLLGISLSHLNND 333
>gi|407922246|gb|EKG15350.1| DNA-repair protein UmuC-like protein [Macrophomina phaseolina MS6]
Length = 486
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 172/291 (59%), Gaps = 7/291 (2%)
Query: 156 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 215
M F+A KLCP+LI +P +F KYT + R V YDP F +AS+DEAYL+IT C +
Sbjct: 1 MASFVAMKLCPQLICLPLNFEKYTAKAREVRAVLEHYDPRFESASIDEAYLNITAYCEDH 60
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
+ ++ +++R V+E+ +T SAG+A N LAK+CS+ NKPNGQF L NDR +M F+
Sbjct: 61 HMDPEDVVQQMRREVHEKTNITVSAGIAANAKLAKICSNKNKPNGQFRLANDRATIMAFM 120
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LP RKI GIG+V E L D G+ TC ++ + + L +F F + LGLG T
Sbjct: 121 RDLPTRKINGIGRVFEREL-DAIGVKTCGDIYEHRAYLPQLFGEKAFQFLMQCYLGLGRT 179
Query: 336 NT-PQARF-RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 393
P + RKS+ +E TF DK L KL AE L D+++ +GRTL LK+K
Sbjct: 180 KIQPAEEYERKSVGTESTFHDMSDKDDLRAKLWHTAEELEKDLERTQFKGRTLVLKVKLH 239
Query: 394 SFEVRTRAVTLQKYISSSEDILKHASVL---LKAELP-VSLRLIGLRVTQF 440
++EV TR V I ED+ K++ + L+ E+P + LRL+GLRVT
Sbjct: 240 TYEVLTRQVAPPFAIHKKEDLYKYSLPILAKLEKEIPGLKLRLMGLRVTHL 290
>gi|344272661|ref|XP_003408150.1| PREDICTED: DNA polymerase kappa [Loxodonta africana]
Length = 864
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+I++M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIKNMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ ++LE +RDL+ + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMDLEQSRDLNSTIVHIDMDAFYAAVEMRDNPELKNKPIAVGSMSMLTTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 KFGVRAAMPGFIAKRLCPQLIIVPPNFDKYQAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
TE +ER
Sbjct: 205 TEHLQER 211
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 157/237 (66%), Gaps = 9/237 (3%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + +R AVM FI
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIHPNRQAVMDFI 346
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRKI GIG+VTE +L+ GI TC E+ Q+ +LL +FS ++ +FL V LGLGST
Sbjct: 347 KDLPIRKISGIGQVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHVSLGLGST 405
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + RKS+S ERTFS Y E+ L+ D+QK+GL+GRT+T+KLK +F
Sbjct: 406 HLERDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKKGLKGRTVTIKLKNVNF 465
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDK 444
EV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 466 EVKTRASTVSSVVSTAEEIFAIAKELLRTEVDADFPHPLRLRLMGVRISSFANEEDK 522
>gi|6681760|gb|AAF23270.1| DINP protein [Homo sapiens]
Length = 870
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 449 SDPTQKTLTNFMTSGHAS 466
Q+++ F+ +G+ +
Sbjct: 525 Q---QRSIIGFLQAGNQA 539
>gi|30048187|gb|AAH50718.1| POLK protein [Homo sapiens]
Length = 472
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 382
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLK 452
>gi|7705344|ref|NP_057302.1| DNA polymerase kappa [Homo sapiens]
gi|59798438|sp|Q9UBT6.1|POLK_HUMAN RecName: Full=DNA polymerase kappa; AltName: Full=DINB protein;
Short=DINP
gi|6049286|gb|AAF02540.1|AF163570_1 DINB protein [Homo sapiens]
gi|6463740|dbj|BAA86943.1| DINB1 [Homo sapiens]
gi|30039655|gb|AAP12648.1| polymerase (DNA directed) kappa [Homo sapiens]
gi|119616169|gb|EAW95763.1| polymerase (DNA directed) kappa, isoform CRA_b [Homo sapiens]
gi|119616170|gb|EAW95764.1| polymerase (DNA directed) kappa, isoform CRA_b [Homo sapiens]
gi|119616171|gb|EAW95765.1| polymerase (DNA directed) kappa, isoform CRA_b [Homo sapiens]
gi|189054406|dbj|BAG37179.1| unnamed protein product [Homo sapiens]
Length = 870
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 449 SDPTQKTLTNFMTSGHAS 466
Q+++ F+ +G+ +
Sbjct: 525 Q---QRSIIGFLQAGNQA 539
>gi|332233863|ref|XP_003266124.1| PREDICTED: DNA polymerase kappa isoform 1 [Nomascus leucogenys]
Length = 870
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYQAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 214 bits (546), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTALTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 449 SDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLHAGNQALSATG 544
>gi|261334858|emb|CBH17852.1| DNA polymerase kappa, putative [Trypanosoma brucei gambiense
DAL972]
Length = 572
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 147/459 (32%), Positives = 243/459 (52%), Gaps = 36/459 (7%)
Query: 10 SSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIE 69
S+S P +Q T+ N KAGM VDKE+V+ ++ +G+ + NE+R ++++
Sbjct: 34 SASRQPTAFQ--LTLDCN-KAGMGNVDKERVEAIIRGAGEGTPFLLNEQRLVEGREKQLR 90
Query: 70 HMRARCAKLT--------SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVET 121
++ + + T + + ++ K ELEATR L +++H+DMD FYAAVE
Sbjct: 91 ELKRKSSLFTRLLGGERNAAQRTQWELKVSKIEQELEATRRLG-TYIHLDMDMFYAAVEI 149
Query: 122 LSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYY 181
+P P+A+GTM+ + TANY AR G+R MPGF+A K+CP L+ +P DF Y
Sbjct: 150 KKHPEYATIPLAIGTMTRLQTANYIARGRGIRQGMPGFLALKICPNLLILPPDFDAYNEE 209
Query: 182 SDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRERGISGIE-IAEELRTSVYEEAGLTCS 239
S+ R++ +YDPN++ LDE L+++ + R G E +A ELR V+ E LT S
Sbjct: 210 SNTVRRIVAEYDPNYIVVGLDELALEVSAYIERFEGTKTAEDVASELRVRVFGETKLTAS 269
Query: 240 AGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVF 298
AG+ P LAK+ S+INKPNGQ L + R VMT++ L +R + G+GKVTE +L+
Sbjct: 270 AGIGPTAALAKIASNINKPNGQHDLNLHTREDVMTYVRDLGLRSVPGVGKVTEALLKG-L 328
Query: 299 GINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-------GSTNT-----PQARFRKSI 346
GI T ++ + LC + ++ F L +G+ + NT RK+I
Sbjct: 329 GITTLSDIYNRRVELCYILHNNLFRFLLGASIGIMQWPDAATAANTENCEGATGEQRKAI 388
Query: 347 SSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK 406
SSER+ + K + + + +M+K + R ++L ++ AS+ + +L +
Sbjct: 389 SSERSITTPRTKEGMQEMVDTVFNGAYEEMRKSEIMCRRISLTIRWASYRYQQYTKSLIQ 448
Query: 407 YISSSEDILKHASVLLKAELPVSLR-----LIGLRVTQF 440
+ S + + L+ LP + + L+G+R++
Sbjct: 449 HSDDSATLRRAVDELM---LPHAAKYSEMCLLGVRLSDL 484
>gi|397478334|ref|XP_003810503.1| PREDICTED: DNA polymerase kappa isoform 1 [Pan paniscus]
gi|397478336|ref|XP_003810504.1| PREDICTED: DNA polymerase kappa isoform 2 [Pan paniscus]
Length = 871
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 446
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 447 APSDPTQKTLTNFMTSGHAS 466
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
>gi|410210590|gb|JAA02514.1| polymerase (DNA directed) kappa [Pan troglodytes]
Length = 871
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 214 bits (546), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 446
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 447 APSDPTQKTLTNFMTSGHAS 466
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
>gi|23208515|gb|AAN15780.1|AF315602_1 DNA polymerase kappa [Homo sapiens]
Length = 672
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
>gi|410339117|gb|JAA38505.1| polymerase (DNA directed) kappa [Pan troglodytes]
Length = 871
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 214 bits (546), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 446
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 447 APSDPTQKTLTNFMTSGHAS 466
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
>gi|410256758|gb|JAA16346.1| polymerase (DNA directed) kappa [Pan troglodytes]
gi|410256760|gb|JAA16347.1| polymerase (DNA directed) kappa [Pan troglodytes]
Length = 871
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 446
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 447 APSDPTQKTLTNFMTSGHAS 466
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
>gi|114599641|ref|XP_001149179.1| PREDICTED: DNA polymerase kappa isoform 6 [Pan troglodytes]
gi|410294520|gb|JAA25860.1| polymerase (DNA directed) kappa [Pan troglodytes]
Length = 871
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 214 bits (546), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 446
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 524
Query: 447 APSDPTQKTLTNFMTSGHAS 466
Q+++ F+ +G+ +
Sbjct: 525 Q-----QRSIIGFLQAGNQA 539
>gi|380813532|gb|AFE78640.1| DNA polymerase kappa [Macaca mulatta]
Length = 870
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 449 SDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
>gi|355691402|gb|EHH26587.1| DNA polymerase kappa [Macaca mulatta]
Length = 870
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 449 SDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
>gi|429752207|ref|ZP_19285078.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 326 str.
F0382]
gi|429177425|gb|EKY18750.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 326 str.
F0382]
Length = 356
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 200/337 (59%), Gaps = 9/337 (2%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE L P L+GK +AVG ++ TA+YEAR+FGVR+A+ G ARKLCP L
Sbjct: 1 MDAFYASVEQLDFPELRGKAIAVGGGEARGVVATASYEARKFGVRSAISGAQARKLCPHL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFV F +Y S R +F +Y SLDEAYLD+T V ++ S IA+E+R
Sbjct: 61 IFVKPRFERYKQISMQIRAIFYEYTDLVEPLSLDEAYLDVT-VNKKGNPSATLIAQEIRQ 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
++ E GLT SAG++ N+ +AK+ SD +KPNGQ + + V F+ L +RK GIGK
Sbjct: 120 RIFNETGLTASAGISINKFIAKIASDYHKPNGQTTI--TQAEVQDFLDKLDVRKFYGIGK 177
Query: 289 VTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISS 348
VT + + GI +++ +K ++ ++ + G+ + R RKS+ +
Sbjct: 178 VTAEKMYQL-GIFKGKDLREKSLAFLERNFGNSGHYYYELSRGIHRSEVQPFRIRKSVGA 236
Query: 349 ERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKY 407
E TF+ + + R+L IAE + ++K+ + G+T+TLK+K + F ++TR+ TL+ +
Sbjct: 237 EETFAENLTSEVYMERELERIAEDVVRRLKKQQVAGKTITLKIKYSDFTIQTRSKTLKDF 296
Query: 408 ISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 443
ISS E+IL H LL E L S+RL+G+ V+ N +
Sbjct: 297 ISSKEEILLHIKELLYQERLSESVRLLGISVSHLNNE 333
>gi|56160428|gb|AAV80828.1| polymerase kappa isoform 2 [Homo sapiens]
Length = 489
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 382
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLK 452
>gi|399030722|ref|ZP_10731053.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Flavobacterium sp. CF136]
gi|398071121|gb|EJL62391.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Flavobacterium sp. CF136]
Length = 360
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 128/350 (36%), Positives = 206/350 (58%), Gaps = 9/350 (2%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGF 159
+ R +H+DMDAFYA+VE + NP+L+GK +AVG ++ A+YEAR+FGVR+A+ G
Sbjct: 6 IYRKIIHIDMDAFYASVEQMDNPALRGKAIAVGGSENRGVVSAASYEARKFGVRSAISGV 65
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+A+K CPE+IFV F +Y S ++F +Y SLDEAYLD+T+ ++ S
Sbjct: 66 LAKKYCPEIIFVRPRFDRYKEISTKIHEIFHEYTDMVEPLSLDEAYLDVTQ-NKKGNPSA 124
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
+A+E+R ++ E G+T SAG++ N+ +AK+ SD NKPNGQ + D V+ F+ LP
Sbjct: 125 SLLAQEIRLRIFNEVGITASAGISVNKFVAKIASDYNKPNGQKTVNPDE--VIPFLEELP 182
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
IRK G+GKVT + + GI T ++ K + F+ +V G+ ++
Sbjct: 183 IRKFYGVGKVTTEKMYQL-GIFTGLDLKSKSVEFLEKHFGKSGGFYFNVVRGIHNSEVKA 241
Query: 340 ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+R KS+++E TF V + + +L +IA L ++K + G+T+TLK+K + F +
Sbjct: 242 SRITKSVAAEHTFDVNLSSEIFMLEQLEKIAVSLEKRLKKYNILGKTVTLKIKYSDFTQQ 301
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRA 447
TR+ TL +I+ IL+ LL E + S+RL+G+ + N ++ +A
Sbjct: 302 TRSKTLPYFIADKSLILETVEELLYQERMKDSVRLLGISLNNLNTEQKKA 351
>gi|242133583|gb|ACS87877.1| putative DNA polymerase kappa, partial [Crithidia sp. ATCC 30255]
Length = 519
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 148/412 (35%), Positives = 216/412 (52%), Gaps = 49/412 (11%)
Query: 23 TVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPV 82
+V+ N KAG+ VDKEK + ++ E+SK S Y++NEERK A Q+ I+ + + + V
Sbjct: 111 SVFDNTKAGLQSVDKEKTEALIKELSKNSSYYQNEERKAANRQKHIDALLEKTRYYEASV 170
Query: 83 ISH---YQKVADKRILELEAT----RDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG 135
++K+ + + +LEAT R+ ++H+DMD FYAAVE NP + P+ +G
Sbjct: 171 RGRPDVFRKL-QREVADLEATIESHREFDHIYVHLDMDMFYAAVEMKKNPRFRTLPLGIG 229
Query: 136 TMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPN 195
T+ M+ T NY AR++GVR+ MPGFI KLCPEL+ VPTDF S + V YDP+
Sbjct: 230 TIGMLSTTNYIARQYGVRSGMPGFIGLKLCPELVIVPTDFAACRVESQKFKAVVRSYDPS 289
Query: 196 FMAASLDE------AYLDI----TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPN 245
+DE +YL + ER + +I EE R V+EE LT SAG+AP
Sbjct: 290 AHGLGMDEIMMCLNSYLAVHCMSATTHAERFDAAEKIVEECRRRVHEETELTASAGIAPT 349
Query: 246 RLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCE 304
LAK+ S+ KPNGQ V R AVM F+S + +R++ GIGK E IL + GI+T
Sbjct: 350 PTLAKMASNYKKPNGQSSVRLFTREAVMDFLSPIAVRQVPGIGKSQESILAGL-GIHTLG 408
Query: 305 EMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA---------------------RFR 343
++ + L + + T +F L +G+G Q +R
Sbjct: 409 DIYAERHRLYYILTRKTYEFLLCSAMGVGGMYDSQEVTTSSSAVDGSAEDGEGAEEDWWR 468
Query: 344 KSISSERTFSVTEDK----ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
KS+ ERTFS ++ ++ YR L + +L KE L + LKLK
Sbjct: 469 KSVGQERTFSRLLNRGDLQSIAYRNLHKSHSILV----KERLLTSQIVLKLK 516
>gi|73952201|ref|XP_536321.2| PREDICTED: DNA polymerase kappa isoform 2 [Canis lupus familiaris]
Length = 861
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DK+K+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKDKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +RDL+ + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRYAMELEQSRDLNNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYYAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNF+A SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSTEVKEILADYDPNFLAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 205 TKHLQER 211
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/264 (45%), Positives = 171/264 (64%), Gaps = 14/264 (5%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ VLPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQVLPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHHFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 THLARDGERKSMSVERTFSEISKAEEQYNLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 447
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F NE+ R
Sbjct: 465 FEVKTRASTVSSVVSTTEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPNEEDKRH 524
Query: 448 PSDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ +G+ S+ G
Sbjct: 525 ----QQRSIIGFLQAGNQSQSAPG 544
>gi|355750000|gb|EHH54338.1| DNA polymerase kappa [Macaca fascicularis]
Length = 870
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAEITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIEADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 449 SDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
>gi|109077621|ref|XP_001105220.1| PREDICTED: DNA polymerase kappa isoform 5 [Macaca mulatta]
gi|297294555|ref|XP_002804464.1| PREDICTED: DNA polymerase kappa [Macaca mulatta]
Length = 870
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAEITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 449 SDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
>gi|55731632|emb|CAH92522.1| hypothetical protein [Pongo abelii]
Length = 898
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/187 (54%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQS 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI +P +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIMPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/285 (40%), Positives = 168/285 (58%), Gaps = 39/285 (13%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAG---------------------------VAPNRLL 248
G S E+ +E+R + ++ LT SAG +APN +L
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGNNLIISFSLGDFNPVQDCRREPRRPQGIAPNTML 346
Query: 249 AKVCSDINKPNGQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML 307
AKVCSD NKPNGQ+ +LPN R AVM FI LPIRK+ GIGKVTE +L+ GI TC E+
Sbjct: 347 AKVCSDKNKPNGQYQILPN-RQAVMDFIKDLPIRKVSGIGKVTEKMLK-ALGIITCTELY 404
Query: 308 QKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAE 367
Q+ +LL +FS ++ +FL + LGLGST+ + RKS+S ERTFS Y E
Sbjct: 405 QQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQE 464
Query: 368 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL- 426
+ L+ D+QK+ L+GRT+T+KLK +FEV+TRA T+ +S++E+I A LLK E+
Sbjct: 465 LCSELAQDLQKQRLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEID 524
Query: 427 -----PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHAS 466
P+ LRL+G+R++ F ++ R Q+++ F+ +G+ +
Sbjct: 525 ADFPHPLRLRLMGVRISSFPNEEDRKHQ---QRSIIGFLQAGNQA 566
>gi|372208892|ref|ZP_09496694.1| DNA polymerase IV 2 [Flavobacteriaceae bacterium S85]
Length = 348
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/339 (38%), Positives = 203/339 (59%), Gaps = 13/339 (3%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAF+A+V L +P L+GK +AVG +I A+YEAR+FGV++AM +A+K+CPEL
Sbjct: 1 MDAFFASVAQLDHPELRGKAIAVGGDGKRGVIAAASYEARKFGVKSAMASSLAKKMCPEL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFV +DF +Y S+L R +F +Y SLDEAYLD+T ++ S IA+E+R
Sbjct: 61 IFVRSDFARYKEISNLVRSIFREYTDLIEPLSLDEAYLDVT-FNKKECPSATLIAQEIRI 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIG- 287
+ E+ GL SAG+APN+ +AK+ SDINKPNGQ + D V+ F+ LPIRK G+G
Sbjct: 120 KIKEQTGLNASAGIAPNKFVAKIASDINKPNGQKTIAPDE--VIDFLEVLPIRKFYGVGK 177
Query: 288 KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSIS 347
K TE + R GI T ++ K S A + S+ G+ ++ R RKS+
Sbjct: 178 KTTEKMYR--LGIFTGADLKSKSIAFLEQHFKSAAQHYYSIVRGIHNSPVKPFRTRKSVG 235
Query: 348 SERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQ 405
+E T+ ++T + +L KL +++ + +QK ++GRT+TLK+K + F TR+ TL
Sbjct: 236 AEHTYLENLTSEVFML-EKLQQLSREIEGRLQKNQVKGRTVTLKIKYSDFSQTTRSKTLD 294
Query: 406 KYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNED 443
++S+ + I K LL + ++ S+RL+G+ + + +
Sbjct: 295 TFVSTHQQIYKVIKELLYQQKVSNSVRLLGISINNLDNE 333
>gi|228472365|ref|ZP_04057130.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
gi|228276233|gb|EEK14968.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
Length = 367
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/345 (37%), Positives = 206/345 (59%), Gaps = 11/345 (3%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGF 159
+ R +H+DMDAF+A+VE NPSL+G P+AVG ++ A+YEARR+GVR+AM G
Sbjct: 1 MERKIIHIDMDAFFASVEQHDNPSLRGLPIAVGGGEARGVVAAASYEARRYGVRSAMAGA 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+A++LCP LIFV F +Y S R +F +Y SLDEAYLD+T ++ S
Sbjct: 61 MAKQLCPSLIFVKPRFDRYREVSMQIRAIFHEYTDLVEPLSLDEAYLDVTTNKKDLP-SA 119
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IA+++R ++E+ GLT SAG++ N+ +AK+ SD NKPNGQ +P ++ F++ L
Sbjct: 120 TLIAQQIRAKIFEQTGLTASAGISVNKFIAKIASDYNKPNGQKTVPPQE--ILDFLAPLD 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
I+K GIGKVT + GI T ++ K + + ++F + G+ +
Sbjct: 178 IKKFYGIGKVTAQKMYQK-GIFTGADLRAKSLEELQTYFGNNGEYFYQIARGIHLSAVQP 236
Query: 340 ARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKSI E TF ++T ++ L + L E+ E ++ ++++ L +T+TLKLK + F+
Sbjct: 237 FRLRKSIGVEHTFETNITSER-FLEKPLKELCEEVALRLKEKKLLAKTVTLKLKYSDFKQ 295
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 441
+TR+ ++ ++I +S DI LL E L S+RL+G+ ++ FN
Sbjct: 296 QTRSRSIPEFIGNSTDIYAVVEELLYQEKLYESVRLVGVSLSHFN 340
>gi|421850035|ref|ZP_16283004.1| DNA polymerase IV [Acetobacter pasteurianus NBRC 101655]
gi|371459135|dbj|GAB28207.1| DNA polymerase IV [Acetobacter pasteurianus NBRC 101655]
Length = 360
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 141/344 (40%), Positives = 197/344 (57%), Gaps = 18/344 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP+LKG+P+AVG ++ A+YEAR+FGVR+AMP A
Sbjct: 7 RRIIHIDMDAFYASVEQRDNPALKGQPVAVGRCQERGVVAAASYEARKFGVRSAMPSVQA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP LIFVP F Y S +F +Y P SLDEAYLD+T R S
Sbjct: 67 QRKCPHLIFVPPRFDVYRAVSAQIHAIFARYTPLIQPLSLDEAYLDVTHPLLPRP-SATA 125
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KPNGQFV+P +R F++SLP+
Sbjct: 126 IAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGE--DFVASLPVN 183
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP- 338
G+G T + GI+T + L++ SL L F + A ++ G+ G + P
Sbjct: 184 AFHGVGPATARRMH-TLGIHTGAD-LRRFSLDILRQHFGKAAAFYY---GIARGKDDRPV 238
Query: 339 -QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ E TF A L+ L E+A + A QK L GRT+TLKL+ F+
Sbjct: 239 EPNRPRKSLGKEVTFEQDLRTPAELHAALRELASKVWAGCQKRNLTGRTITLKLRYTDFD 298
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
TR+++L + E + + A LL LPV +RL+G+ ++
Sbjct: 299 QCTRSLSLADPVQDQEILAEMACRLLAPLLPVRAPVRLLGITLS 342
>gi|56160420|gb|AAV80824.1| polymerase kappa isoform 8 [Mus musculus]
Length = 547
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEA L+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAXLNI 203
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 204 TQHLQER 210
Score = 198 bits (503), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 146/224 (65%), Gaps = 7/224 (3%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLI 433
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLM 508
>gi|258541348|ref|YP_003186781.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01]
gi|384041269|ref|YP_005480013.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-12]
gi|384049784|ref|YP_005476847.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-03]
gi|384052894|ref|YP_005485988.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-07]
gi|384056126|ref|YP_005488793.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-22]
gi|384058767|ref|YP_005497895.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-26]
gi|384062061|ref|YP_005482703.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-32]
gi|384118137|ref|YP_005500761.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256632426|dbj|BAH98401.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01]
gi|256635483|dbj|BAI01452.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-03]
gi|256638538|dbj|BAI04500.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-07]
gi|256641592|dbj|BAI07547.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-22]
gi|256644647|dbj|BAI10595.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-26]
gi|256647702|dbj|BAI13643.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-32]
gi|256650755|dbj|BAI16689.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653746|dbj|BAI19673.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-12]
Length = 359
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 141/344 (40%), Positives = 197/344 (57%), Gaps = 18/344 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP+LKG+P+AVG ++ A+YEAR+FGVR+AMP A
Sbjct: 6 RRIIHIDMDAFYASVEQRDNPALKGQPVAVGRCQERGVVAAASYEARKFGVRSAMPSVQA 65
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP LIFVP F Y S +F +Y P SLDEAYLD+T R S
Sbjct: 66 QRKCPHLIFVPPRFDVYRAVSAQIHAIFARYTPLIQPLSLDEAYLDVTHPLLPRP-SATA 124
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KPNGQFV+P +R F++SLP+
Sbjct: 125 IAEEIRAAILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGE--DFVASLPVN 182
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP- 338
G+G T + GI+T + L++ SL L F + A ++ G+ G + P
Sbjct: 183 AFHGVGPATARRMH-TLGIHTGAD-LRRFSLDILRQHFGKAAAFYY---GIARGKDDRPV 237
Query: 339 -QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ E TF A L+ L E+A + A QK L GRT+TLKL+ F+
Sbjct: 238 EPNRPRKSLGKEVTFEQDLRTPAELHAALRELASKVWAGCQKRNLTGRTITLKLRYTDFD 297
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
TR+++L + E + + A LL LPV +RL+G+ ++
Sbjct: 298 QCTRSLSLADPVQDQEILAEMACRLLAPLLPVRAPVRLLGITLS 341
>gi|315224925|ref|ZP_07866744.1| DNA-directed DNA polymerase IV [Capnocytophaga ochracea F0287]
gi|314945038|gb|EFS97068.1| DNA-directed DNA polymerase IV [Capnocytophaga ochracea F0287]
Length = 353
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/338 (39%), Positives = 203/338 (60%), Gaps = 11/338 (3%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE L P L+GK +AVG ++ TA+YEAR+FGVR+A+ G ARKLCP L
Sbjct: 1 MDAFYASVEQLDYPELRGKAIAVGGGEPRGVVATASYEARKFGVRSAISGAQARKLCPHL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFV F +Y S R +F +Y SLDEAYLD+T V ++ S IA+E+R
Sbjct: 61 IFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYLDVT-VNKKGNPSATLIAQEIRQ 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
++++ GLT SAG++ N+ +AK+ SD KP+GQ + V F+ L +RK GIGK
Sbjct: 120 RIFQQTGLTASAGISVNKFIAKIASDYRKPDGQTTITE--AEVQDFLDRLDVRKFYGIGK 177
Query: 289 VTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISS 348
VT + + GI ++ +K ++ +++ + G+ + R RKS+ +
Sbjct: 178 VTAEKMYQL-GIFKGRDLREKSLEFLERNFGNSGNYYYELSRGIHRSEVQPFRIRKSVGA 236
Query: 349 ERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK 406
E TF+ +T + +L R+L IAE ++ + K+ + G+T+TLK+K ++F V+TR+ TL+
Sbjct: 237 EETFAENLTSEVYML-RELEHIAEDVARRLDKQQVAGKTVTLKIKYSNFTVQTRSKTLKD 295
Query: 407 YISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 443
+ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 296 FISSKDDILLHIKELLYQEHPAESVRLLGISLSHLNNE 333
>gi|157871748|ref|XP_001684423.1| putative DNA polymerase kappa [Leishmania major strain Friedlin]
gi|68127492|emb|CAJ05431.1| putative DNA polymerase kappa [Leishmania major strain Friedlin]
Length = 751
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 152/470 (32%), Positives = 236/470 (50%), Gaps = 64/470 (13%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVIS 84
+ + KAG+ +KEK + ++ E+SK S ++ NEERK Q+++E + + + + V S
Sbjct: 145 FDDRKAGLRSAEKEKTEALIKELSKNSSFYVNEERKAQQRQRQVEGLLVKTRQYEASVRS 204
Query: 85 H-------YQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM 137
H + VAD + E+ R ++H+DMD F+AAVE NP P+ +G+M
Sbjct: 205 HPDVFRQLQRDVADLEAI-FESHRSFDSIYVHMDMDMFFAAVEMKKNPQYAEVPLGIGSM 263
Query: 138 SMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFM 197
SM+ T NY AR++GV++ MPGFI +LCP+L+ VPTDF S + V +YDP+
Sbjct: 264 SMLSTTNYVARKYGVQSGMPGFIGMRLCPQLVIVPTDFAACRVESAKFKGVVREYDPDAQ 323
Query: 198 AASLDEA-----------YLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNR 246
+DE ++D+T ++ + EE R + E GLT SAG+AP
Sbjct: 324 LLGMDEVMMCLDDYLAHHHVDVTTHAGRFDVAE-RVIEECRRRIAEATGLTVSAGIAPTP 382
Query: 247 LLAKVCSDINKPNGQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEE 305
LAK+ S+ KPNGQF V R AV+ +++S+P+R++ GIGK E IL + GI T E
Sbjct: 383 TLAKMASNYKKPNGQFAVRLFSREAVINYLASIPVRQVPGIGKSRESILAGL-GIRTLGE 441
Query: 306 MLQKGSLLCAVFSHSTADFFLSVGLGLGST-----NTPQARF------------------ 342
+ ++ L + + T +F L+ +G+G P +
Sbjct: 442 VYEQRHRLFYILTRKTYEFLLASSIGIGGMYDSRETAPSSSAGATTGKTVAAMDGASNED 501
Query: 343 ---RKSISSERTFSVTEDK----ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
RKS+ ERTF ++ A+ Y+ L E L +EGL + LKLK SF
Sbjct: 502 DWGRKSVGHERTFYKLMNRMALQAIAYKNLRRSQETLV----EEGLLCSQVVLKLKHHSF 557
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELPV-----SLRLIGLRVTQF 440
V+ + +L Y E + + LL LPV RL+G+R+ +
Sbjct: 558 HVKQHSKSLNVYTDDHEVLRRALDELL---LPVMDDFAEFRLLGVRLEKL 604
>gi|336172096|ref|YP_004579234.1| DNA polymerase IV [Lacinutrix sp. 5H-3-7-4]
gi|334726668|gb|AEH00806.1| DNA polymerase IV [Lacinutrix sp. 5H-3-7-4]
Length = 366
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 140/343 (40%), Positives = 201/343 (58%), Gaps = 11/343 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI---CTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE + NP LKGK +AVG A+YEAR+FGVR+A+ G A
Sbjct: 8 RKIIHVDMDAFYASVEAMDNPELKGKAIAVGGGGNRGVVSAASYEARKFGVRSAISGVKA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
R+LCP+LIFV F +Y S R +F Y SLDEAYLD+TE ++ S
Sbjct: 68 RRLCPDLIFVKPRFDRYKEISSKIRAIFYDYTDLVEPLSLDEAYLDVTE-NKKGNPSASL 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPI 280
IAEE+RT ++ E GLT SAG++ N+ +AKV SD NKPNGQ V P + V+ F+ +L I
Sbjct: 127 IAEEIRTRIFNEVGLTASAGISINKFIAKVASDYNKPNGQKTVNPEE---VLGFLEALDI 183
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
RK GIGKVT + GI T ++ K + ++ + G+ ++
Sbjct: 184 RKFYGIGKVTAEKMYQK-GIFTGTDLKSKSLEFLEQNFGKSGSYYYYIVRGIHNSEVKPN 242
Query: 341 RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+++ERTFS + + KL IAE +S + + + G+T+TLK+K + F ++T
Sbjct: 243 RIRKSLAAERTFSENLSSEIFMLEKLEHIAEEVSKRLIRSKVAGKTVTLKIKYSDFTLQT 302
Query: 400 RAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 441
R+ TL +IS +L+ A LL E + S+RL+G+ ++ N
Sbjct: 303 RSKTLPYFISDKSVVLETAKELLYQEKMNNSVRLLGISLSNLN 345
>gi|429747821|ref|ZP_19281066.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 380 str.
F0488]
gi|429162315|gb|EKY04645.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 380 str.
F0488]
Length = 353
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 133/338 (39%), Positives = 201/338 (59%), Gaps = 11/338 (3%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE L P L+GK +AVG ++ TA+YEAR+FGVR+A+ G ARKLCP L
Sbjct: 1 MDAFYASVEQLDYPELRGKAIAVGGGEPRGVVATASYEARKFGVRSAISGAQARKLCPHL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFV F +Y S R +F +Y SLDEAYLD+T V ++ S IA+E+R
Sbjct: 61 IFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYLDVT-VNKKGNPSATLIAQEIRQ 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
++++ GLT SAG++ N+ +AK+ SD KPNGQ + V F+ L +RK GIGK
Sbjct: 120 RIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITE--AEVQDFLDRLDVRKFYGIGK 177
Query: 289 VTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISS 348
VT + + GI ++ +K ++ ++ + G+ + R RKS+ +
Sbjct: 178 VTAEKMYQL-GIFKGRDLREKSLEFLERNFGNSGHYYYELSRGIHRSEVQPFRIRKSVGA 236
Query: 349 ERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK 406
E TF+ +T + +L R+L IAE + + K+ + G+T+TLK+K ++F V+TR+ TL+
Sbjct: 237 EETFAENLTSEVYML-RELDHIAEDVVRRLDKQQVAGKTVTLKIKYSNFTVQTRSKTLKD 295
Query: 407 YISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 443
+ISS +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 296 FISSKDDILLHIKELLYQERPAESVRLLGISLSHLNNE 333
>gi|149726533|ref|XP_001504725.1| PREDICTED: DNA polymerase kappa [Equus caballus]
Length = 860
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + ++IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNRRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE +RDL+ + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDKFAMELEQSRDLNNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+L+ VP +F KY S +++ YDPNF+A SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLLIVPPNFDKYRAVSREVKEILADYDPNFLAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 205 TKHLQER 211
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 168/263 (63%), Gaps = 12/263 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + DR AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPDRQAVMDFI 345
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL V +GLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHQFLHVSMGLGST 404
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + RKS S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 HLARDGERKSRSVERTFSEMSKAEEQYSLCQELCGELAQDLQKEGLKGRTVTIKLKNVNF 464
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAP 448
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+RV+ F NE++ +
Sbjct: 465 EVKTRASTVSSVISTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRVSGFPNEEEKKH- 523
Query: 449 SDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ +G+ + G
Sbjct: 524 ---QQRSIIGFLQAGNQTPSATG 543
>gi|402871879|ref|XP_003899875.1| PREDICTED: DNA polymerase kappa isoform 1 [Papio anubis]
Length = 870
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 102/187 (54%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPVAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 KFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 405 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 449 SDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ +G+ + G
Sbjct: 525 Q---QRSIIGFLQAGNQALSATG 544
>gi|327532749|ref|NP_001126479.1| DNA polymerase kappa [Pongo abelii]
Length = 898
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 102/187 (54%), Positives = 139/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQS 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI P +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIKPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 198 bits (503), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 115/285 (40%), Positives = 168/285 (58%), Gaps = 39/285 (13%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAG---------------------------VAPNRLL 248
G S E+ +E+R + ++ LT SAG +APN +L
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGNNLIISFSLGDFNPVQDCRREPRRPQGIAPNTML 346
Query: 249 AKVCSDINKPNGQF-VLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML 307
AKVCSD NKPNGQ+ +LPN R AVM FI LPIRK+ GIGKVTE +L+ GI TC E+
Sbjct: 347 AKVCSDKNKPNGQYQILPN-RQAVMDFIKDLPIRKVSGIGKVTEKMLK-ALGIITCTELY 404
Query: 308 QKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAE 367
Q+ +LL +FS ++ +FL + LGLGST+ + RKS+S ERTFS Y E
Sbjct: 405 QQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQE 464
Query: 368 IAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL- 426
+ L+ D+QK+ L+GRT+T+KLK +FEV+TRA T+ +S++E+I A LLK E+
Sbjct: 465 LCSELAQDLQKQRLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEID 524
Query: 427 -----PVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHAS 466
P+ LRL+G+R++ F ++ R Q+++ F+ +G+ +
Sbjct: 525 ADFPHPLRLRLMGVRISSFPNEEDRKHQ---QRSIIGFLQAGNQA 566
>gi|344205893|ref|YP_004791034.1| DNA polymerase IV [Stenotrophomonas maltophilia JV3]
gi|343777255|gb|AEM49808.1| DNA polymerase IV [Stenotrophomonas maltophilia JV3]
Length = 364
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 145/351 (41%), Positives = 200/351 (56%), Gaps = 24/351 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FGVR+AMP A
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVRA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+TE SGIE
Sbjct: 65 ERLCPDAIFVPPDFARYKAVSQQVREIFLRHTDLVEPLSLDEAYLDVTEPK-----SGIE 119
Query: 222 ----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
IA +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V F+ S
Sbjct: 120 LATDIARTIRTQIREETRLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--VDAFLLS 177
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ ++ G+GKV E L GI TC ++ Q + S + G+
Sbjct: 178 LPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPV 236
Query: 338 PQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ +SISSE TF+ ED L L + ++AE +K G T+ LKLKTA F
Sbjct: 237 EPDQQVQSISSEDTFA--EDLPLEDLGEAIVQLAEKTWNATRKTERVGHTVVLKLKTAQF 294
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 442
+ TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ + F E
Sbjct: 295 RILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVGLGGFRE 344
>gi|404448685|ref|ZP_11013677.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Indibacter alkaliphilus LW1]
gi|403765409|gb|EJZ26287.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Indibacter alkaliphilus LW1]
Length = 360
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 140/350 (40%), Positives = 203/350 (58%), Gaps = 14/350 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE + NP LKG+P+AVG ++ A+YEAR++GVR+AM G +A
Sbjct: 5 RKIIHVDMDAFYASVEQMDNPDLKGRPLAVGGNRERGVVAAASYEARKYGVRSAMSGKMA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
CP LIFV F +Y S R++F Y SLDEA+LD+TE + S
Sbjct: 65 ALKCPHLIFVKPRFDRYKEISTRIREIFYAYTDLVEPLSLDEAFLDVTE-NKVGNPSATL 123
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPI 280
IA+E+R + EE GL SAG++ N+ LAK SDINKPNGQ +LP D +F+ LPI
Sbjct: 124 IAKEIRARIKEEIGLNASAGISYNKFLAKTASDINKPNGQAVILPQD---AESFLEKLPI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K GIGKVT ++ + GI+ ++ Q L F S F+ ++ G+ +
Sbjct: 181 EKFFGIGKVTSEKMKSL-GIHNGYDLKQFSLQFLTKRFGKSGLHFY-NIVRGIHLSEVQP 238
Query: 340 ARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKS+S+E TFS + + L+EI E L ++K G++GRT+TLK+K F ++
Sbjct: 239 NRIRKSLSAENTFSTDLKSEVEWLAALSEIFEELKRRVEKSGIKGRTVTLKIKYHDFNIQ 298
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQFNEDKVRA 447
TR+ T ++Y + I + LL+ E VS +RL G+ ++ N ++ R
Sbjct: 299 TRSRTFEQYPEEGK-IWETVLELLRQEALVSPVRLFGIGLSNLNVEEERV 347
>gi|403256450|ref|XP_003920890.1| PREDICTED: DNA polymerase kappa isoform 1 [Saimiri boliviensis
boliviensis]
gi|403256452|ref|XP_003920891.1| PREDICTED: DNA polymerase kappa isoform 2 [Saimiri boliviensis
boliviensis]
Length = 863
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGSK++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSKFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+L+ + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAVELEQSRNLNNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLTTSNYCAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPHLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 205 TKHLQER 211
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 117/262 (44%), Positives = 168/262 (64%), Gaps = 10/262 (3%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + DR AVM FI
Sbjct: 281 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPDRQAVMDFI 340
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 341 KDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGST 399
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 400 HLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVNF 459
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 449
EV+TRA T+ IS++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 460 EVKTRASTVSSVISTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPSEEDRKHQ 519
Query: 450 DPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ +G+ + G
Sbjct: 520 ---QRSIIAFLQAGNQTPSASG 538
>gi|189491622|ref|NP_612525.1| DNA polymerase kappa [Rattus norvegicus]
gi|187469039|gb|AAI66778.1| Polk protein [Rattus norvegicus]
Length = 851
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 102/187 (54%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ + LE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDRFAMGLERNRNLNNTIVHVDMDAFYAAVEMRDNPELKEKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 204 TQHLQER 210
Score = 202 bits (513), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 118/255 (46%), Positives = 163/255 (63%), Gaps = 10/255 (3%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQIVPSRSAVMDFI 345
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS S+ +FL V LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLL-ALGIVTCTELYQQRALLSLLFSESSWHYFLHVALGLGST 404
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK F
Sbjct: 405 DLARDGERKSMSVERTFSEINKTEEQYSLCQELCTELAHDLQKEGLKGRTVTIKLKNVDF 464
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 449
EV+TRA T+ IS++EDI A LL+ E+ P+ LRL+G+R++ F+ D R
Sbjct: 465 EVKTRASTVPSAISTAEDIFAVAKELLRTEVTAGSPQPLRLRLMGVRMSTFSNDDDRKHQ 524
Query: 450 DPTQKTLTNFMTSGH 464
Q+++ F+ +G+
Sbjct: 525 ---QRSIIGFLQAGN 536
>gi|395825506|ref|XP_003785969.1| PREDICTED: DNA polymerase kappa [Otolemur garnettii]
Length = 876
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + AK+TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYVNELKKEKQVNQRIENMIQQKAKITSQQLWKAQV 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+L+ + +H+DMDAFYAAVE NP L+ KP+AVG++SM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLNNTIVHIDMDAFYAAVEMRDNPELQDKPIAVGSVSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMATSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 205 TKHLQER 211
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 168/260 (64%), Gaps = 16/260 (6%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAK+CSD +KPNGQ+ +LPN R AVM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTKLTASAGIAPNTMLAKICSDKHKPNGQYQILPN-REAVMDF 352
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ G+GKVTE +L+ GI TC E+ Q+ +LL +F ++ +FL + LGLGS
Sbjct: 353 IKDLPIRKVSGVGKVTEKMLK-ALGIITCTELYQQRALLSLLFPETSWHYFLHISLGLGS 411
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 412 TYLARDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 471
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 446
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK +
Sbjct: 472 FEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRISSFPNEEDKKQ 531
Query: 447 APSDPTQKTLTNFMTSGHAS 466
QK++ F+ +G+ S
Sbjct: 532 Q-----QKSIIGFLQAGNQS 546
>gi|429755769|ref|ZP_19288401.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 324 str.
F0483]
gi|429172746|gb|EKY14286.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 324 str.
F0483]
Length = 353
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 132/338 (39%), Positives = 201/338 (59%), Gaps = 11/338 (3%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE L P L+GK +AVG ++ TA+YEAR+FGVR+A+ G ARKLCP L
Sbjct: 1 MDAFYASVEQLDYPELRGKAIAVGGGEPRGVVATASYEARKFGVRSAISGAQARKLCPHL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFV F +Y S R +F +Y SLDEAYLD+T V ++ S IA+E+R
Sbjct: 61 IFVKPRFERYKQISMQIRAIFHEYTDLVEPLSLDEAYLDVT-VNKKGNPSATLIAQEIRQ 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
++++ GLT SAG++ N+ +AK+ SD KPNGQ + V F+ L +RK GIGK
Sbjct: 120 RIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITE--AEVQDFLDRLDVRKFYGIGK 177
Query: 289 VTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISS 348
VT + + GI ++ +K ++ ++ + G+ + R RKS+ +
Sbjct: 178 VTAEKMYQL-GIFKGRDLREKSLEFLERNFGNSGHYYYELSRGIHRSEVQPFRIRKSVGA 236
Query: 349 ERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK 406
E TF+ +T + +L R+L IAE + + K+ + G+T+TLK+K ++F V+TR+ TL+
Sbjct: 237 EETFAENLTSEVYML-RELDHIAEDVVRRLDKQQVAGKTVTLKIKYSNFTVQTRSKTLKD 295
Query: 407 YISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 443
+IS+ +DIL H LL E P S+RL+G+ ++ N +
Sbjct: 296 FISNKDDILLHIKELLYQERPAESVRLLGISLSHLNNE 333
>gi|60686906|gb|AAX35542.1| DNA polymerase kappa [Xenopus laevis]
Length = 862
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 105/187 (56%), Positives = 135/187 (72%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ + +KGS++++NE +K+ + Q+IE M + ++LTS I Q
Sbjct: 26 KAGMEGLDKEKINKIIMDATKGSRFYDNELKKDQQVNQRIEKMMQQKSQLTSQQIRKAQI 85
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ L LE RDLSR +HVDMDAFYAAVE NP LK KPMAVG+ SM+ T+NY AR
Sbjct: 86 QVDRLALALEKNRDLSRIIVHVDMDAFYAAVEMRDNPELKDKPMAVGSKSMLSTSNYLAR 145
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA+KLCP LI VP +F KY S R++ +YDPNF+ SLDEAYLD
Sbjct: 146 RFGVRAAMPGFIAKKLCPALIIVPPNFDKYRAVSSEVREILAQYDPNFLPMSLDEAYLDF 205
Query: 209 TEVCRER 215
T+ ER
Sbjct: 206 TDHLSER 212
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 183/295 (62%), Gaps = 21/295 (7%)
Query: 185 TRKVFCKYDPNFMA-ASLDEAYLDITEVCRER--------GISGIEIAEELRTSVYEEAG 235
T + + P+F+A ++ + D TE R G S E +E+R + ++
Sbjct: 245 TSPILFEDSPSFVADQNVSQPGQDTTEEIRRPSLEKAVVFGTSVEEAVKEMRFRIEQKTT 304
Query: 236 LTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR 295
LT SAG+APN +LAKVCSD NKPNGQ+ + NDR A+ FI LPIRK+ GIGKVTE +L+
Sbjct: 305 LTASAGIAPNTMLAKVCSDKNKPNGQYRIANDRQAIKDFIKDLPIRKVPGIGKVTEKMLK 364
Query: 296 DVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT 355
+ TC ++ Q+ +LL +FS ++ F+ + LGLGST+ + RKS+S+ERTFS
Sbjct: 365 -ALEVVTCTDLYQQRALLSLLFSETSWQNFVHISLGLGSTHVERDGERKSMSTERTFSEM 423
Query: 356 EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 415
Y E+ LS D+QKEGL+G+T+T+KLK +FEVRTRA+T+ +S+ E+I
Sbjct: 424 SSAEEQYGLCQELCRDLSKDLQKEGLKGKTVTIKLKNVTFEVRTRALTVTSPVSTEEEIF 483
Query: 416 KHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAPSDPTQKTLTNFMTSG 463
A +LKAE+ P+ LRL+G+RV+ F NE++ + QK++T+F+ SG
Sbjct: 484 AVAKEILKAEIDLASPEPLQLRLMGVRVSGFLNEEEKKH----HQKSITSFLHSG 534
>gi|148234382|ref|NP_001086552.1| DNA-directed DNA polymerase kappa [Xenopus laevis]
gi|49899074|gb|AAH76794.1| Polk-prov protein [Xenopus laevis]
Length = 862
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 105/187 (56%), Positives = 135/187 (72%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ + +KGS++++NE +K+ + Q+IE M + ++LTS I Q
Sbjct: 26 KAGMEGLDKEKINKIIMDATKGSRFYDNELKKDQQVNQRIEKMMQQKSQLTSQQIRKAQI 85
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ L LE RDLSR +HVDMDAFYAAVE NP LK KPMAVG+ SM+ T+NY AR
Sbjct: 86 QVDRLALALEKNRDLSRIIVHVDMDAFYAAVEMRDNPELKDKPMAVGSKSMLSTSNYLAR 145
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA+KLCP LI VP +F KY S R++ +YDPNF+ SLDEAYLD
Sbjct: 146 RFGVRAAMPGFIAKKLCPALIIVPPNFDKYRAVSSEVREILAQYDPNFLPMSLDEAYLDF 205
Query: 209 TEVCRER 215
T+ ER
Sbjct: 206 TDHLSER 212
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 183/295 (62%), Gaps = 21/295 (7%)
Query: 185 TRKVFCKYDPNFMA-ASLDEAYLDITEVCRER--------GISGIEIAEELRTSVYEEAG 235
T + + P+F+A ++ + D TE R G S E +E+R + ++
Sbjct: 245 TSPILFEDSPSFVADQNVSQPGQDTTEEIRRPSLEKAVVFGTSVEEAVKEMRFRIEQKTT 304
Query: 236 LTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILR 295
LT SAG+APN +LAKVCSD NKPNGQ+ + NDR A+ FI LPIRK+ GIGKVTE +L+
Sbjct: 305 LTASAGIAPNMMLAKVCSDKNKPNGQYRIANDRQAIKDFIKDLPIRKVPGIGKVTEKMLK 364
Query: 296 DVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVT 355
+ TC ++ Q+ +LL +FS ++ F+ + LGLGST+ + RKS+S+ERTFS
Sbjct: 365 -ALEVVTCTDLYQQRALLSLLFSETSWQNFVHISLGLGSTHVERDGERKSMSTERTFSEM 423
Query: 356 EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 415
Y E+ LS D+QKEGL+G+T+T+KLK +FEVRTRA+T+ +S+ E+I
Sbjct: 424 SSAEEQYGLCQELCRDLSKDLQKEGLKGKTVTIKLKNVTFEVRTRALTVTSPVSTEEEIF 483
Query: 416 KHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAPSDPTQKTLTNFMTSG 463
A +LKAE+ P+ LRL+G+RV+ F NE++ + QK++T+F+ SG
Sbjct: 484 AVAKEILKAEIDLASPEPLQLRLMGVRVSGFLNEEEKKH----HQKSITSFLHSG 534
>gi|296194317|ref|XP_002744900.1| PREDICTED: DNA polymerase kappa [Callithrix jacchus]
Length = 861
Score = 222 bits (565), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 102/187 (54%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGSK++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSKFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+L+ + +H+DMDAFYAAVE NP LK KP+AVG++SM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLNNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSVSMLTTSNYYAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 171/263 (65%), Gaps = 12/263 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 281 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 339
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 340 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 398
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 399 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 458
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 459 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPSEEDRKH 518
Query: 449 SDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ +G+ + + G
Sbjct: 519 Q---QRSIIGFLQAGNQTPSVNG 538
>gi|410948820|ref|XP_003981127.1| PREDICTED: DNA polymerase kappa [Felis catus]
Length = 863
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 139/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E ++GSK++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATRGSKFYVNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +RDL+ + +H+DMDAFYAAVE NP LK KP+AVG+M M+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRDLNNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMMMLSTSNYYAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+L VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLTIVPPNFDKYQAVSREVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 205 TKHLQER 211
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/299 (40%), Positives = 181/299 (60%), Gaps = 15/299 (5%)
Query: 181 YSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSA 240
++D+ + + +P F A S ++ I + G S E +E+R + ++ LT SA
Sbjct: 253 FNDIPPDLHPQGNP-FQANSEEQNNPQILQNAIVFGTSAEEAVKEIRFRIEQKTTLTASA 311
Query: 241 GVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI 300
G+APN +LAKVCSD NKPNGQ+ + DR AVM FI LPIRK+ GIGKVTE +L+ G+
Sbjct: 312 GIAPNTMLAKVCSDKNKPNGQYQILPDREAVMDFIKDLPIRKVSGIGKVTEKMLK-ALGV 370
Query: 301 NTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL 360
TC E+ Q+ +LL +FS ++ FL + LGLGST + RKS+S ERTFS
Sbjct: 371 ITCTELYQQRALLSLLFSETSWHHFLHISLGLGSTLLARDGDRKSMSVERTFSEMSKAEE 430
Query: 361 LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV 420
Y E+ L+ D+QKEGL+GRT+T+KLK +FEV+TRA T+ +S++E+I A
Sbjct: 431 QYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKD 490
Query: 421 LLKAEL------PVSLRLIGLRVTQF--NEDKVRAPSDPTQKTLTNFMTSGHASKKIVG 471
LL+ E+ P+ LRL+G+R++ F EDK + Q+++ F+ +G+ + G
Sbjct: 491 LLRTEIDADFPHPLRLRLMGVRLSSFPNEEDKKQQ-----QRSIIGFLQAGNQALSATG 544
>gi|398018131|ref|XP_003862252.1| DNA polymerase kappa, putative [Leishmania donovani]
gi|322500481|emb|CBZ35558.1| DNA polymerase kappa, putative [Leishmania donovani]
Length = 754
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 169/543 (31%), Positives = 260/543 (47%), Gaps = 94/543 (17%)
Query: 9 ASSSENPRPWQSYHTVY------TNA------------KAGMDGVDKEKVQKVVYEMSKG 50
SSS P S H+ + TNA KAG+ +KEK + ++ E+SK
Sbjct: 111 GSSSRAAAPHGSLHSFFQPNPASTNATTAPKVVYFDDRKAGLRSAEKEKTEAIIKELSKN 170
Query: 51 SKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQKVADKR--ILELEATRDLSRS-- 106
S ++ NEERK Q+++E + + + + V SH R + +LEA + RS
Sbjct: 171 SSFYVNEERKAQQRQRQVERLLVKTRQYEASVRSHPDVFRQLRRDVADLEAIFETYRSFD 230
Query: 107 --WLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKL 164
++H+DMD F+AAVE NP P+ +G+MSM+ T NY AR++GV++ MPGFI +L
Sbjct: 231 SIYVHMDMDMFFAAVEMKKNPQYAEVPLGIGSMSMLSTTNYVARKYGVQSGMPGFIGMRL 290
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEA-----------YLDITEVCR 213
CP+L+ VPTDF S + V +YD + +DE ++D+T
Sbjct: 291 CPQLVIVPTDFAACRAESAKFKAVVREYDSDAQLLGMDEVMMCLDDYLAHHHMDVTTHAG 350
Query: 214 ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVM 272
++ + EE R + E GLT SAG+AP LAK+ S+ KPNGQF V R AVM
Sbjct: 351 RFDVAE-RVIEECRRRIAEATGLTVSAGIAPTPTLAKMASNYKKPNGQFAVRLFSREAVM 409
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
+++S+ +R++ GIGK E +L + GI+T E+ ++ L + + T +F L+ +G+
Sbjct: 410 NYLASISVRQVPGIGKSRESVLAGL-GIHTLGEVYEQRHRLFYILTRKTYEFLLASSIGI 468
Query: 333 G------------STNTPQARF--------------RKSISSERTFSVTEDK----ALLY 362
G S T + RKS+ ERTF ++ A+ Y
Sbjct: 469 GGMYDSLEAAPSSSAGTTNGKTVAAVDGGSNEDDWGRKSVGHERTFYKLTNRMALQAIAY 528
Query: 363 RKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 422
+ L E L+ +EGL + LKLK SF V+ + +L Y E + + LL
Sbjct: 529 KNLRRSHETLA----EEGLLCSQVVLKLKHRSFHVKQHSKSLNVYTDDHEVLRRALDELL 584
Query: 423 KAELPV-----SLRLIGLRVTQFNED--------------KVRAPSDPTQKTLTNFMTSG 463
+PV RL+G+R+ + K A ++ Q TL++F T
Sbjct: 585 ---MPVVDDFAEFRLLGVRLEKLRRRPRSDGTGGATTLTVKSAAEAESNQLTLSHFFTRQ 641
Query: 464 HAS 466
AS
Sbjct: 642 LAS 644
>gi|440749593|ref|ZP_20928839.1| DNA polymerase IV [Mariniradius saccharolyticus AK6]
gi|436481879|gb|ELP38025.1| DNA polymerase IV [Mariniradius saccharolyticus AK6]
Length = 369
Score = 221 bits (564), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 135/344 (39%), Positives = 201/344 (58%), Gaps = 14/344 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE L NP L+GKP+AVG ++ A+YEAR+FGVR+AMPG IA
Sbjct: 8 RKIIHVDMDAFFASVEQLDNPELRGKPVAVGGNRERGVVAAASYEARKFGVRSAMPGKIA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
CP LIFV F +Y S R++F Y SLDEA+LD+TE + S
Sbjct: 68 ALRCPGLIFVRPRFERYKEISGQIRQIFLDYTDLVEPLSLDEAFLDVTE-NKVNNPSATR 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPI 280
IA E+R + +E GL SAG++ N+ LAK SDINKPNGQ +LP + A F+ LPI
Sbjct: 127 IALEIRKRIKDELGLNASAGISYNKFLAKTASDINKPNGQAVILPKNAEA---FLEKLPI 183
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+ GIGKVT ++++ GI+ ++ Q L F S F+ ++ G+ +
Sbjct: 184 ERFYGIGKVTAEKMKEL-GIHNGFDLKQYSVQYLTKKFGKSGLHFY-NIVRGIHLSEVKP 241
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+S+E TFS ++ED+ + L I E + M++ G++GRT+TLK+K F +
Sbjct: 242 NRIRKSLSAESTFSKDISEDEQIA-DALERIWEEVVRRMERSGVKGRTVTLKIKYHDFTI 300
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFN 441
TR+ T++K++ + + + L ++RL+G+ ++ N
Sbjct: 301 HTRSKTIEKFLEPARIKEIIWELWHQEPLVAAVRLLGIGISNLN 344
>gi|119383484|ref|YP_914540.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
gi|119373251|gb|ABL68844.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
Length = 363
Score = 221 bits (564), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 137/350 (39%), Positives = 199/350 (56%), Gaps = 12/350 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM--SMICTANYEARRFGVRAAMPGFIAR 162
R +HVDMDAFYA+VE +P+L+GKP+AVG + ++ A+YEARR+GVR+AMP A
Sbjct: 10 RRIVHVDMDAFYASVEQRDDPALRGKPVAVGGIQRGVVAAASYEARRYGVRSAMPSMRAM 69
Query: 163 KLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEI 222
+LCP+LIFV F Y S R +F +Y P SLDEAYLD+T+ G + I
Sbjct: 70 RLCPDLIFVKPRFDVYRAVSQQVRAIFAEYTPLVEPLSLDEAYLDLTDHL--NGSTATRI 127
Query: 223 AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRK 282
A+E+R + E GLT SAGV+ N+ LAK+ SD KP+G FV+P + A F+ LPI +
Sbjct: 128 AKEIRARIREATGLTASAGVSYNKFLAKLASDQRKPDGLFVIPPE--AGAEFVQGLPIGR 185
Query: 283 IGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
GIG T + + GI T ++ ++ L A F S A ++ ++ G+ + R
Sbjct: 186 FHGIGPATAARM-EAHGILTGADLARQSLDFLTARFGKSGA-YYWNISRGIDTREVKPDR 243
Query: 342 FRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
RKSI +E T F D A + LA +A+ + LRGRT+TLK+K F TR
Sbjct: 244 IRKSIGAENTYFEDLRDIAAAHEALAVLADKVWRHTTTAALRGRTVTLKVKYGDFRQITR 303
Query: 401 AVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQFNEDKVRAP 448
A +L + + S +++L+ A LL P +RL+G+ ++ E + P
Sbjct: 304 ARSLPRAVESRDEMLEMACELLAPVFADPHGVRLLGITLSGLEEARQDEP 353
>gi|354491803|ref|XP_003508043.1| PREDICTED: DNA polymerase kappa-like, partial [Cricetulus griseus]
Length = 407
Score = 221 bits (564), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 139/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ + +KGS+++ NE +KE + Q+IE M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMDATKGSRFYGNELKKEKQVNQRIESMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ ++LE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDRLAMDLERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRER 215
T+ ER
Sbjct: 204 TQHLEER 210
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R VM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTMLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRKVVMDFI 345
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 336 N 336
+
Sbjct: 405 D 405
>gi|329114949|ref|ZP_08243704.1| DNA polymerase IV [Acetobacter pomorum DM001]
gi|326695392|gb|EGE47078.1| DNA polymerase IV [Acetobacter pomorum DM001]
Length = 360
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 140/344 (40%), Positives = 197/344 (57%), Gaps = 18/344 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP+LKG+P+AVG ++ A+YEAR+FGVR+AMP A
Sbjct: 7 RRIIHIDMDAFYASVEQRDNPALKGQPVAVGRCQERGVVAAASYEARKFGVRSAMPSVQA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP LIFVP F Y S +F +Y P SLDEAYLD+T R S
Sbjct: 67 QRKCPHLIFVPPRFDVYRAVSAQIHAIFARYTPLIQPLSLDEAYLDVTNPLLLRP-SATA 125
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KPNGQFV+P +R F+++LP+
Sbjct: 126 IAEEIRAAILHETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGE--AFVANLPVN 183
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP- 338
G+G T + GI+T + L++ SL L F + A ++ G+ G + P
Sbjct: 184 AFHGVGPATAQRMH-TLGIHTGAD-LRRFSLDILRQHFGKAAAFYY---GIARGKDDRPV 238
Query: 339 -QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ E TF+ A L+ L E+A + A QK L GRT+TLKL+ F
Sbjct: 239 EPNRPRKSLGKEITFAQDLRTSAELHAALHELAAKVWAGCQKRNLTGRTITLKLRYTDFN 298
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
TR+++L + E + + A LL LPV +RL+G+ ++
Sbjct: 299 QCTRSLSLADPVQDQEILAEMACRLLAPLLPVRAPVRLLGITLS 342
>gi|149408451|ref|XP_001512578.1| PREDICTED: DNA polymerase kappa isoform 1 [Ornithorhynchus
anatinus]
Length = 873
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 139/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E SKGS+++ENE ++E + Q+IE+M + +++S + Q
Sbjct: 25 KAGMEGLDKEKINKIILEASKGSRFYENELKREKQVNQRIENMMQQKDQISSQQLKKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK ++L+ +RDL + +H+DMDAFYAAVE NP L+ KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDKLAMDLDQSRDLRCTIVHIDMDAFYAAVEMRDNPELRDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP L VPT+F KY S R++ +YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPHLTIVPTNFDKYREVSKEVREILTEYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 160/254 (62%), Gaps = 13/254 (5%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S ++ E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 290 GTSAEDVVREIRFRIEQKTTLTASAGIAPNMMLAKVCSDKNKPNGQYRILPTRQAVMDFI 349
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L+ GI TC ++ Q+ +LL +FS S+ FL + LGLGST
Sbjct: 350 KDLPIRKVSGIGKVTEKMLK-ALGITTCTDLYQQRALLSLLFSESSWHNFLHISLGLGST 408
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + RKS+S ERTFS Y E+ L+ D+QKE L+G+T+TLKLK +F
Sbjct: 409 HLEKDGERKSMSIERTFSEISKAEEQYSLCQELCNDLAQDLQKELLKGKTVTLKLKNVNF 468
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAP 448
EVRTRA T+ +S+ E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 469 EVRTRASTVSSGVSTGEEIYAMAKELLRTEIEADFPHPLRLRLMGVRISGFLLEDKRHQ- 527
Query: 449 SDPTQKTLTNFMTS 462
Q+++ +F+ S
Sbjct: 528 ----QRSIISFLQS 537
>gi|345304664|ref|XP_003428244.1| PREDICTED: DNA polymerase kappa isoform 2 [Ornithorhynchus
anatinus]
Length = 882
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 139/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E SKGS+++ENE ++E + Q+IE+M + +++S + Q
Sbjct: 25 KAGMEGLDKEKINKIILEASKGSRFYENELKREKQVNQRIENMMQQKDQISSQQLKKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK ++L+ +RDL + +H+DMDAFYAAVE NP L+ KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDKLAMDLDQSRDLRCTIVHIDMDAFYAAVEMRDNPELRDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP L VPT+F KY S R++ +YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPHLTIVPTNFDKYREVSKEVREILTEYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 160/254 (62%), Gaps = 13/254 (5%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S ++ E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 299 GTSAEDVVREIRFRIEQKTTLTASAGIAPNMMLAKVCSDKNKPNGQYRILPTRQAVMDFI 358
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L+ GI TC ++ Q+ +LL +FS S+ FL + LGLGST
Sbjct: 359 KDLPIRKVSGIGKVTEKMLK-ALGITTCTDLYQQRALLSLLFSESSWHNFLHISLGLGST 417
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + RKS+S ERTFS Y E+ L+ D+QKE L+G+T+TLKLK +F
Sbjct: 418 HLEKDGERKSMSIERTFSEISKAEEQYSLCQELCNDLAQDLQKELLKGKTVTLKLKNVNF 477
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAP 448
EVRTRA T+ +S+ E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 478 EVRTRASTVSSGVSTGEEIYAMAKELLRTEIEADFPHPLRLRLMGVRISGFLLEDKRHQ- 536
Query: 449 SDPTQKTLTNFMTS 462
Q+++ +F+ S
Sbjct: 537 ----QRSIISFLQS 546
>gi|294901592|ref|XP_002777428.1| DNA polymerase IV, putative [Perkinsus marinus ATCC 50983]
gi|239885064|gb|EER09244.1| DNA polymerase IV, putative [Perkinsus marinus ATCC 50983]
Length = 496
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 166/466 (35%), Positives = 238/466 (51%), Gaps = 64/466 (13%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLC---- 165
+DMD FYAAVE +PSL P+AVG SMI TANY AR++GVRAAMPGFIAR+LC
Sbjct: 18 IDMDMFYAAVEIRDDPSLHDVPLAVGGDSMISTANYVARKYGVRAAMPGFIARELCRRQG 77
Query: 166 PELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERG-----ISGI 220
EL F P D +Y S + + Y P M SLDEAY+DIT E IS +
Sbjct: 78 VELRFKPVDMPRYQAASKIFKDTVSLYGPMKM-LSLDEAYIDITAKVAEAAMVDESISEV 136
Query: 221 EIAEELRTSVYEE-----AGLTCSAGVAPNRL-LAKVCSDINKPNGQFVLPNDRMAVMTF 274
E A L + + EE +GLTCSAG+A LAK+ SD+NKPNGQF++P ++ +
Sbjct: 137 EAASLLVSRMREEVCENSSGLTCSAGIARGCFRLAKMASDVNKPNGQFMVPTTTQGMLEW 196
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
+ S+PIRK+ G+G+V+E L GI+ +++ K + L S S + + +G+
Sbjct: 197 LHSMPIRKLHGVGRVSERELSAGLGIHKVGDIIIKAAELLHAMSSSGGHWLIDAAMGVAD 256
Query: 335 TNTPQARFR---KSISSERTFSVTEDKALLYRKLAEIAEMLSADM-----QKEGLRGRTL 386
A KSIS ER+ S + + Y L E+ E L + + +KE GR +
Sbjct: 257 MEDVTAAAESGPKSISQERSLSTAKSGSAAY--LHEVLEELCSQVMELCAEKEQY-GRCV 313
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELPVSLRLIGLRVTQFNED 443
T+KLKT ++V+ ++ TL++ + S + AS L+ A L +RL+G+RV+ F
Sbjct: 314 TVKLKTFEWDVKQKSNTLKREVRSGRLLYSAASELMSTALATLKKPIRLLGVRVSSF--- 370
Query: 444 KVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETSVSLDVSETNNY 503
+ P Q TL +F+ + AS V D+C+ ++
Sbjct: 371 QTAVPQG--QSTLGDFLAAHKASSSRVA---------VDECIT-------------IESH 406
Query: 504 EFGDPVCDNSLPDLNDENCSFSNKISE--VEKIHENEVSQLLEGNS 547
E G V N C+F NK ++ E HEN V + E S
Sbjct: 407 EHGGIV-----EAWNCTVCTFLNKATDRRCEMCHENRVGPVAELGS 447
>gi|384097234|ref|ZP_09998355.1| DNA polymerase IV [Imtechella halotolerans K1]
gi|383837202|gb|EID76602.1| DNA polymerase IV [Imtechella halotolerans K1]
Length = 366
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 133/343 (38%), Positives = 201/343 (58%), Gaps = 11/343 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE L NP L+G P+AVG ++ A+YEAR++GV++AM +IA
Sbjct: 8 RKIIHIDMDAFFASVEQLDNPELRGIPVAVGGSEKRGVVAAASYEARKYGVKSAMSSYIA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+K CPELIFV F +Y S+ +K+F Y SLDEAYLD+T ++ S E
Sbjct: 68 KKKCPELIFVKPRFDRYKEISESIQKIFYDYTDLVEPLSLDEAYLDVT-YNKKGNPSASE 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPI 280
IA+E+R +Y GLT SAG++ N+ +AK+ SD NKPNGQ V P + V +F+ +L I
Sbjct: 127 IAKEIRNRIYLNTGLTASAGISINKFIAKIASDYNKPNGQKTVKPKE---VESFLEALDI 183
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
RK GIGKVT + + GI T +++ K ++ + + G ++
Sbjct: 184 RKFYGIGKVTTEKMY-LLGIFTGKDLKTKSREFLEYHFGNSGSHYYQIVRGFHNSPVKPE 242
Query: 341 RFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R KS+ +E TF + L +L I++ L ++K L G+T+TLK+K + F ++T
Sbjct: 243 RIPKSVGAEHTFLENLSSEVFLKERLDNISQELETRLKKNKLAGKTITLKIKYSDFTLQT 302
Query: 400 RAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 441
R+ TL +IS IL+ A+ LL E L S+RL+G+ ++ N
Sbjct: 303 RSKTLPYFISDKSLILEIATELLYQEKLFNSVRLVGISLSNLN 345
>gi|449278668|gb|EMC86459.1| DNA polymerase kappa, partial [Columba livia]
Length = 864
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/187 (54%), Positives = 134/187 (71%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM G+DKEK+ K++ E +KGS+++ENE +K+ + Q+IE M K+T+ + Q
Sbjct: 24 KAGMQGLDKEKINKIIMEATKGSRFYENELKKDQQVNQRIEKMMQLKEKITTQQLLKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK ++ELE R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDKLVIELEQNRNLSNTIVHIDMDAFYAAVEMRDNPELKEKPIAVGSMSMLSTSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA+KLCP L VP +F KY S R++ +YDPNFM LDEAYL++
Sbjct: 144 RFGVRAAMPGFIAKKLCPHLTIVPLNFEKYGKVSKEVREILSEYDPNFMPMGLDEAYLNL 203
Query: 209 TEVCRER 215
TE ER
Sbjct: 204 TEHLEER 210
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 170/257 (66%), Gaps = 16/257 (6%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ+ +P +R AV+ F+
Sbjct: 278 GNSAEEVVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDCNKPNGQYKIPPERQAVLDFL 337
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 338 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEASWRNFLDISLGLGST 396
Query: 336 NTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
+ + RKS+S+ERTFS ED+ L R E+ L+ ++QKEGL+G+T+TLKLK
Sbjct: 397 HLERDGERKSMSTERTFSEMNTAEDQYSLCR---ELCRDLAQELQKEGLKGKTVTLKLKN 453
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 446
+FEV+TRA T+ +S+ E+I A LL E+ P+ +RL+G+RV+ F ++ +
Sbjct: 454 VNFEVKTRASTVLSSVSTEEEIFAVAKDLLGTEIDSVAPHPLRIRLMGVRVSGFLSEEEK 513
Query: 447 APSDPTQKTLTNFMTSG 463
QK++T+F+ SG
Sbjct: 514 KYQ---QKSITSFLKSG 527
>gi|406663875|ref|ZP_11071888.1| DNA polymerase IV [Cecembia lonarensis LW9]
gi|405551867|gb|EKB47480.1| DNA polymerase IV [Cecembia lonarensis LW9]
Length = 361
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 134/343 (39%), Positives = 196/343 (57%), Gaps = 12/343 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE + NP L+GKP+AVG ++ A+YEAR +GVR+AM G +A
Sbjct: 5 RKIIHVDMDAFYASVEQMDNPDLRGKPVAVGGNRERGVVAAASYEARFYGVRSAMSGKLA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
CP+L+FV F +Y S+ R++F Y SLDEA+LD+TE + S
Sbjct: 65 ALKCPKLVFVKPRFDRYKELSNQIREIFYDYTDLVEPLSLDEAFLDVTE-NKVNNPSATL 123
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPI 280
IA+E+R + EE GL SAG++ N+ LAK SDINKPNGQ +LP + A F+ LPI
Sbjct: 124 IAQEIRGRIREEVGLNASAGISYNKFLAKTASDINKPNGQAVILPKEAEA---FLEKLPI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K GIGKVT ++ + GI+ ++ Q L F S FF ++ G+ +
Sbjct: 181 EKFFGIGKVTAEKMKSI-GIHNGHDLKQFSIQYLTKKFGKSGLHFF-NIVRGIHLSEVQP 238
Query: 340 ARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKS+S+E TF D+ L EI E L + + G++GRT+TLK+K + F ++
Sbjct: 239 NRIRKSLSAENTFEKDLSDRVSFEAALLEIFEELKRRINRTGIKGRTVTLKIKYSDFTIQ 298
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFN 441
TR+ T ++Y + +L + L + +RL G+ ++ N
Sbjct: 299 TRSKTFEQYPEEQKIWETVMDLLQQDALALPVRLFGIGLSNLN 341
>gi|71756021|ref|XP_828925.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834311|gb|EAN79813.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 572
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 146/459 (31%), Positives = 242/459 (52%), Gaps = 36/459 (7%)
Query: 10 SSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIE 69
S+S P +Q T+ N KAGM VDKE+V+ ++ +G+ + NE+R ++++
Sbjct: 34 SASRQPTAFQ--LTLDCN-KAGMGNVDKERVEAIIRGAGEGTPFLLNEQRLVEGREKQLR 90
Query: 70 HMRARCAKLT--------SPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVET 121
++ + + T + + ++ K ELEATR L +++H+DMD FYAAVE
Sbjct: 91 ELKRKSSLFTRLLGGERNAAQRTQWEVKVSKIEQELEATRRLG-TYIHLDMDMFYAAVEI 149
Query: 122 LSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYY 181
+P P+A+GTM+ + TANY AR G+R MPGF+A K+CP L+ +P D Y
Sbjct: 150 KKHPEYATIPLAIGTMTRLQTANYIARGRGIRQGMPGFLALKICPNLLILPPDDDSYNEE 209
Query: 182 SDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRERGISGIE-IAEELRTSVYEEAGLTCS 239
S+ R++ +YDPN++ LDE L+++ + R G E +A ELR V+ E LT S
Sbjct: 210 SNTVRRIVAEYDPNYIVVGLDELALEVSAYIERFEGTKTAEDVASELRVRVFGETKLTAS 269
Query: 240 AGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVF 298
AG+ P LAK+ S+INKPNGQ L + R VMT++ L +R + G+GKVTE +L+
Sbjct: 270 AGIGPTAALAKIASNINKPNGQHDLNLHTREDVMTYVRDLGLRSVPGVGKVTEALLKG-L 328
Query: 299 GINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-------GSTNT-----PQARFRKSI 346
GI T ++ + LC + ++ F L +G+ + NT RK+I
Sbjct: 329 GITTLSDIYNRRVELCYILHNNLFRFLLGASIGIMQWPDAATAANTENCEGATGEQRKAI 388
Query: 347 SSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK 406
SSER+ + K + + + +M+K + R ++L ++ AS+ + +L +
Sbjct: 389 SSERSITTPRTKEGMQEMVDTVFNGAYEEMRKSEIMCRRISLTIRWASYRYQQYTKSLIQ 448
Query: 407 YISSSEDILKHASVLLKAELPVSLR-----LIGLRVTQF 440
+ S + + L+ LP + + L+G+R++
Sbjct: 449 HSDDSATLRRAVDELM---LPHAAKYSEMCLLGVRLSDL 484
>gi|410030700|ref|ZP_11280530.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Marinilabilia sp. AK2]
Length = 358
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/344 (39%), Positives = 198/344 (57%), Gaps = 14/344 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE + NP LKGKP+AVG ++ A+YEAR +GVR+AM G +A
Sbjct: 5 RKIIHVDMDAFYASVEQMDNPDLKGKPVAVGGNRERGVVAAASYEARAYGVRSAMSGKLA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
C +L+FV F +Y S+ R++F Y SLDEA+LD+TE + S
Sbjct: 65 ALKCSKLVFVKPRFDRYKELSNQIREIFYDYTDLVEPLSLDEAFLDVTE-NKVNNPSATL 123
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPI 280
IA+E+R + EE GL SAG++ N+ LAK SDINKPNGQ +LP + A F+ LPI
Sbjct: 124 IAQEIRDRIKEEVGLNASAGISYNKFLAKTASDINKPNGQAVILPKEAEA---FLEKLPI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K GIGKVT ++ + GI+ ++ Q L F S FF ++ G+ +
Sbjct: 181 EKFFGIGKVTAEKMKSI-GIHNGHDLKQFSLQYLTKKFGKSGLHFF-NIVRGIHLSEVQP 238
Query: 340 ARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKS+S+E TF D+ L EI E L + + G++GRT+TLK+K + F ++
Sbjct: 239 NRIRKSLSAENTFEKDLSDRVSFEAALLEIFEELKRRINRTGIKGRTVTLKIKYSDFTIQ 298
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 441
TR+ T ++Y + I + LL+ E L + +RL G+ ++ N
Sbjct: 299 TRSKTFEQY-PEEQKIWETVMDLLQQETLALPVRLFGIGLSNLN 341
>gi|395510536|ref|XP_003759530.1| PREDICTED: DNA polymerase kappa [Sarcophilus harrisii]
Length = 865
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 138/187 (73%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ENE +KE + Q+IE+M + +++T+ + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYENELKKEKQVNQRIENMMQQKSQITTQQLWKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE R+L + +H+DMDAFYAAVE NP L+ KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDKLAMELEQNRNLCCTIIHIDMDAFYAAVEMRDNPELRDKPIAVGSMSMLSTSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+L VP +F KY S R++ YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLTIVPPNFDKYREVSKEVREILADYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRER 215
T+ ER
Sbjct: 204 TKHLEER 210
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 122/283 (43%), Positives = 177/283 (62%), Gaps = 13/283 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + +R AVM FI
Sbjct: 291 GTSADEVVKEIRFRIEQKTSLTASAGIAPNTMLAKVCSDKNKPNGQYQISPNRQAVMDFI 350
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L+ GI TC ++ QK +LL +FS ++ FL + LGLGST
Sbjct: 351 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSDLYQKRALLSLLFSETSWHSFLHISLGLGST 409
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ RKS+S ERTFS LY E+ L+ D+Q+EGL+G+T+T+KLK +F
Sbjct: 410 QMERDGERKSMSIERTFSEINKAEELYSLCQELCNDLAQDLQREGLKGKTVTIKLKNVNF 469
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 449
EV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F+ ++ R
Sbjct: 470 EVKTRASTVAAVVSTAEEIFAIAKELLKVEIDADYPQPLRLRLMGVRISGFSSEEDRKHR 529
Query: 450 DPTQKTLTNFMTSGHASKKIVGDQNSLGSDINDDCLIDDKETS 492
QK++ +F+ G + VG S+ N D ++ ETS
Sbjct: 530 ---QKSIISFLKVGSHTIDPVG---SVLEKNNQDQVMKPPETS 566
>gi|311249680|ref|XP_003123756.1| PREDICTED: DNA polymerase kappa [Sus scrofa]
Length = 878
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/187 (52%), Positives = 139/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE ++E + Q+IE+M + A++TS + Q
Sbjct: 32 KAGMEGLDKEKINKIIMEATKGSRFYGNELKREKQVNQRIENMMQQKAQITSQQLRKAQL 91
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +RDLS + +H+DMDAFYAAVE NP L+ KP+AVG+ +M+ T+NY AR
Sbjct: 92 QVDRFAMELEQSRDLSNTIVHIDMDAFYAAVEMRDNPELRDKPIAVGSRNMLSTSNYHAR 151
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+FGVR AMPGFIA++LCP+LI VP +F KY S +++F YDPNFMA SLDEAYL+I
Sbjct: 152 KFGVRGAMPGFIAKRLCPQLIIVPPNFDKYRAVSSEVKEIFADYDPNFMALSLDEAYLNI 211
Query: 209 TEVCRER 215
T+ ER
Sbjct: 212 TKHLEER 218
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/264 (45%), Positives = 169/264 (64%), Gaps = 14/264 (5%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R VM F
Sbjct: 294 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQVVMDF 352
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC ++ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 353 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTDLYQQRALLSLLFSETSWHYFLHISLGLGS 411
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T P+ RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+TLKLK
Sbjct: 412 TCLPRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKEGLKGRTVTLKLKNVD 471
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRA 447
FEV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F NE++ +
Sbjct: 472 FEVKTRASTVLSVISTAEEIFAIAKELLRTEIDADFPHPLRLRLMGVRLSSFPNEEEKKH 531
Query: 448 PSDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ G+ + G
Sbjct: 532 ----QQRSIIGFLQPGNQTLSATG 551
>gi|393723669|ref|ZP_10343596.1| DNA polymerase IV [Sphingomonas sp. PAMC 26605]
Length = 364
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/344 (38%), Positives = 190/344 (55%), Gaps = 10/344 (2%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE +PSL+G+P+AVG ++ A+YEAR FGVR+AMP A
Sbjct: 13 RKIIHIDMDAFYASVEQRDDPSLRGRPVAVGGSRARGVVAAASYEARVFGVRSAMPSVTA 72
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ CP+L+FVP F Y S R +F Y SLDEAYLD+TE G S
Sbjct: 73 LRRCPDLVFVPPRFDVYGAISQQIRAIFADYTDQIEPLSLDEAYLDVTEDRHGLG-SAKA 131
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAE++R + E LT SAGV+ N+ +AK+ SD NKP+G V+P R + F++SLP++
Sbjct: 132 IAEQIRARIKAETRLTASAGVSYNKFIAKLASDQNKPDGICVIPPARGS--AFVASLPVK 189
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
+ G+G VT + GI T ++ + S AD+ G+ R
Sbjct: 190 RFHGVGPVTATRM-AALGIETGADLRDRPLAFLHAHFGSYADYLYGAARGIDHRPVRSNR 248
Query: 342 FRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
KS+ +ERTF A L+ L +AE +++ G+RGRT+TLKL+ + F TR
Sbjct: 249 ATKSVGAERTFETDIASPADLHAALDRVAEAALVRIERHGVRGRTMTLKLRFSDFRTITR 308
Query: 401 AVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFNE 442
A +L + E + LL A+LPV L RL+GL ++ ++
Sbjct: 309 ARSLSRGAFDRESFVTGGRELLDAQLPVPLGVRLLGLTLSGIHD 352
>gi|423132540|ref|ZP_17120190.1| hypothetical protein HMPREF9714_03590 [Myroides odoratimimus CCUG
12901]
gi|371639611|gb|EHO05227.1| hypothetical protein HMPREF9714_03590 [Myroides odoratimimus CCUG
12901]
Length = 356
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 199/351 (56%), Gaps = 9/351 (2%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGF 159
++R +HVDMDAFYA+VE L P L+GK +AVG +I A+YEAR++GVR+AM
Sbjct: 1 MNRKIIHVDMDAFYASVEQLDFPELRGKALAVGGSEERGVIAAASYEARKYGVRSAMSAM 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+A+K CP LIFV F +Y S + R VF +Y +LDEA+LD+TE + S
Sbjct: 61 MAKKNCPHLIFVKPRFERYKEVSRIIRSVFYEYTDLVEPLALDEAFLDVTE-NKIGCPSA 119
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IA E+R + E GLT S G++ N+ LAK+ SD NKPNGQ + D V+ F+ L
Sbjct: 120 TLIAHEIRMKILERTGLTASVGISINKFLAKIASDYNKPNGQKTIEPDE--VINFLEELE 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
I+K GIGK T + + GI T +++ K + + GL ++
Sbjct: 178 IKKFFGIGKKTADRMYHL-GIFTGKDLKAKSVEFLTEHFGKAGQIYYDIVRGLSNSPVRP 236
Query: 340 ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R KS+ +ERTF + + KL + E LS ++K+GL G+T+TLK+K + F +
Sbjct: 237 NRTIKSVGTERTFDENLSSEVFIETKLDILVEELSLRLKKQGLGGKTITLKIKYSDFVQQ 296
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAP 448
TR+ T+ ++S E IL A VLL E L S+RLIG+ ++ N D+ + P
Sbjct: 297 TRSTTVPYFVSDKEIILDLAKVLLYQEKLKDSVRLIGVSLSNLNTDEKKKP 347
>gi|408823700|ref|ZP_11208590.1| DNA polymerase IV [Pseudomonas geniculata N1]
Length = 386
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/351 (40%), Positives = 197/351 (56%), Gaps = 24/351 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FGVR+AMP A
Sbjct: 26 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVRA 85
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+ IFVP DF +Y S R +F ++ SLDEAYLD+TE SGIE
Sbjct: 86 ERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVTEPK-----SGIE 140
Query: 222 ----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V F+
Sbjct: 141 LATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--VDAFLQP 198
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ ++ G+GKV E L GI TC ++ Q + S + G+
Sbjct: 199 LPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPV 257
Query: 338 PQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ +SISSE TF+ ED L L + ++AE +K G T+ LKLKTA F
Sbjct: 258 EPDQQVQSISSEDTFA--EDLPLEDLGEAIVQLAEKTWKATRKTERVGHTVVLKLKTAQF 315
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 442
+ TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ + F E
Sbjct: 316 RILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVGLGGFRE 365
>gi|305665931|ref|YP_003862218.1| DNA polymerase IV [Maribacter sp. HTCC2170]
gi|88710706|gb|EAR02938.1| DNA polymerase IV [Maribacter sp. HTCC2170]
Length = 366
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 137/344 (39%), Positives = 197/344 (57%), Gaps = 13/344 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE + NP LKGKP+AVG ++ ANYEAR+FGVR+AM G +A
Sbjct: 8 RKIIHVDMDAFYASVEEMDNPELKGKPLAVGGNEVRGVVSAANYEARKFGVRSAMSGVMA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP L FV + +Y S R +F Y SLDEAYLD+T V ++ S
Sbjct: 68 KRNCPHLTFVKPRYNRYKEISKQIRNIFFDYTDLVEPLSLDEAYLDVT-VNKKGNPSATL 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPI 280
IA+E+R + +E GL SAG++ N+ +AKV SD NKPNGQ V P + V+ F+ L I
Sbjct: 127 IAQEIRKRIQDEVGLKASAGISVNKFVAKVASDFNKPNGQKTVNPEE---VLQFLEDLEI 183
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
R G+GKVT + + GI T +E+ K L F S + + V G+ +
Sbjct: 184 RSFFGVGKVTAEKMYKL-GIFTGKELKTKSEEFLIENFGKSGSHYH-KVVRGIHNGAVKP 241
Query: 340 ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R KS+ +ERTFS + + +L IA L + K + G+T+TLK+K + F ++
Sbjct: 242 HRVPKSVGAERTFSENLSSEIFMLERLEHIANELERRLSKTKIAGKTVTLKIKYSDFTLQ 301
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 441
TR+ TL ++S+ IL+ A LL E + S+RL+G+ + N
Sbjct: 302 TRSKTLPYFVSNKSLILEVAKELLYQEKMENSVRLLGISLANLN 345
>gi|397573824|gb|EJK48893.1| hypothetical protein THAOC_32274, partial [Thalassiosira oceanica]
Length = 571
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 158/502 (31%), Positives = 246/502 (49%), Gaps = 76/502 (15%)
Query: 23 TVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENE----ERKEAFIQQKIEHMRARCAKL 78
+ + KAGM G ++++ +++ SKGS + + E+ IQ ++ + + +
Sbjct: 40 VIAASDKAGMKGAPRDRINEIIARESKGSLFMQRAHHLAEKDGEKIQSLLQRLNEKDDQS 99
Query: 79 TSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS 138
+ +S + D ++ + R + + VD+D+F+ + L NP L P VG
Sbjct: 100 DNWRVSMCEDTIDPQLERYRSQRKKVSTRVVVDLDSFFISCHILDNPELDESPCCVGGPK 159
Query: 139 MICTANYEARRFGVRAAMPGFIARKLCPEL-------IFVPTDFTKYTYYSDLTRKVFCK 191
MI T+NY+ARR+GVRAAMPGFI + L EL FV +DF Y S + + +
Sbjct: 160 MISTSNYKARRYGVRAAMPGFIGQVLVKELSGGSECLTFVKSDFKLYHSKSAEVKAILQE 219
Query: 192 YDPNFMAASLDEAYLDI----------TEVCRERGI-------------------SGIEI 222
YD SLDEAY+DI TE R+ S +EI
Sbjct: 220 YDKTLKMCSLDEAYMDIESYLDAYFSITEGDRDHAAITKRMSNSDDDRPPLQEMASILEI 279
Query: 223 AE-------ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTF 274
E +R V+ E GLTCSAG A N ++AK+ SD+NKPNGQ FV P++ + TF
Sbjct: 280 KEVTKNLLHSIRKRVHRETGLTCSAGTASNFMIAKIASDMNKPNGQVFVGPSEE-EIRTF 338
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL-- 332
+S L +RK+ G+G++ E LR G+ T ++ K + + +F +TA F L V +G
Sbjct: 339 LSPLSVRKVCGVGRILEKFLRATLGVVTVADLYAKRAEVNFLFKPATAQFLLRVSIGYSE 398
Query: 333 --------GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 384
G ++ RK +S ERTF T+ + L KL IA L+ D+Q +GL+ R
Sbjct: 399 DSRRESEGGERGDDESAQRKGMSGERTFQPTDTWSDLCVKLESIATRLAKDIQSKGLKPR 458
Query: 385 TLTLKLKTASFEVRTRAVTLQKYI------SSSEDILKHASVLL-----------KAELP 427
T+ LK+K A+F + TR T Q + S++ ++ A LL K +
Sbjct: 459 TIGLKVKLANFNLLTRTNTRQVALFQQAGDGSTQTLVDIAVKLLRDVKRAFVEEHKDKAG 518
Query: 428 VSLRLIGLRVTQFNEDKVRAPS 449
+RL+G+R + F ++ PS
Sbjct: 519 FMVRLLGVRCSNFRLERETQPS 540
>gi|373111204|ref|ZP_09525464.1| hypothetical protein HMPREF9712_03057 [Myroides odoratimimus CCUG
10230]
gi|423135773|ref|ZP_17123418.1| hypothetical protein HMPREF9715_03193 [Myroides odoratimimus CIP
101113]
gi|423329499|ref|ZP_17307305.1| hypothetical protein HMPREF9711_02879 [Myroides odoratimimus CCUG
3837]
gi|371640315|gb|EHO05919.1| hypothetical protein HMPREF9715_03193 [Myroides odoratimimus CIP
101113]
gi|371641265|gb|EHO06852.1| hypothetical protein HMPREF9712_03057 [Myroides odoratimimus CCUG
10230]
gi|404603127|gb|EKB02802.1| hypothetical protein HMPREF9711_02879 [Myroides odoratimimus CCUG
3837]
Length = 356
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 138/352 (39%), Positives = 200/352 (56%), Gaps = 11/352 (3%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGF 159
++R +HVDMDAFYA+VE L P L+GK +AVG +I A+YEAR++GVR+AM
Sbjct: 1 MNRKIIHVDMDAFYASVEQLDFPELRGKALAVGGSEERGVIAAASYEARKYGVRSAMSAM 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-S 218
+A+K CP LIFV F +Y S + R VF +Y +LDEA+LD+TE + G S
Sbjct: 61 MAKKNCPHLIFVKPRFERYKEVSRIIRSVFYEYTDLVEPLALDEAFLDVTE--NKIGCPS 118
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
IA E+R + E GLT SAG++ N+ LAK+ SD NKPNGQ + D V+ F+ L
Sbjct: 119 ATLIAHEIRMKILERTGLTASAGISINKFLAKIASDYNKPNGQKTIEPDE--VINFLEEL 176
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
I+K GIGK T + + GI T +++ K + + GL ++
Sbjct: 177 EIKKFFGIGKKTADRMYHL-GIFTGKDLKAKSVEFLTEHFGKAGQIYYDIVRGLSNSPVR 235
Query: 339 QARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R KS+ +ERTF + + KL + E LS ++K+ L G+T+TLK+K + F
Sbjct: 236 PNRTIKSVGTERTFDENLSSEVFIETKLDMLVEELSLRLKKQSLGGKTITLKIKYSDFVQ 295
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAP 448
+TR+ T+ ++S E IL A VLL E L S+RLIG+ ++ N D+ + P
Sbjct: 296 QTRSTTVPYFVSDKEIILDLAKVLLYQEKLKDSVRLIGVSLSNLNTDEKKKP 347
>gi|417405027|gb|JAA49239.1| Putative dna polymerase kappa [Desmodus rotundus]
Length = 866
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 138/187 (73%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ENE +KE + Q+I++M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYENELKKEKQVNQRIKNMLQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +RDL+ + +H+DMDAFYAAVE NP LK KP+AVG+ SM+ T+NY AR
Sbjct: 85 QVDRCAMELEQSRDLTNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSSSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA+KLCP+L VP +F Y S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKKLCPQLTIVPPNFDIYRAVSREVKEILADYDPNFMATSLDEAYLNI 204
Query: 209 TEVCRER 215
T +ER
Sbjct: 205 TTHLQER 211
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 168/257 (65%), Gaps = 16/257 (6%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 344
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LP+RK+ GIGKVTE +L+ GI TC E+ ++ +LL +FS ++ +FL + +GLGS
Sbjct: 345 IKDLPLRKVSGIGKVTEKMLK-ALGIITCTELYEQRALLSLLFSETSWRYFLQISMGLGS 403
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ P+ RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 404 THLPRDGERKSMSVERTFSEMSKAEEQYSLCQELCSELAQDLQKEGLKGRTVTIKLKNVN 463
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 446
FEV+TRA T+ +S++E+I A LL+ E+ P+ LRL+G+R++ F EDK
Sbjct: 464 FEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDADFPRPLRLRLMGVRLSSFLNEEDKKH 523
Query: 447 APSDPTQKTLTNFMTSG 463
Q+++ F+ SG
Sbjct: 524 Q-----QRSIVGFLQSG 535
>gi|383451945|ref|YP_005358666.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
gi|380503567|emb|CCG54609.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
Length = 359
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 201/346 (58%), Gaps = 11/346 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE L NP LKGKP+AVG ++ A+YEAR++GVR+AM G A
Sbjct: 7 RKIIHIDMDAFYASVEQLDNPELKGKPIAVGGSEVRGVVSAASYEARKYGVRSAMSGVQA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCPEL FV F +Y S R +F +Y SLDEAYLD+TE ++ S
Sbjct: 67 ARLCPELTFVRPRFDRYKEISKQIRAIFLEYTDLVEPLSLDEAYLDVTE-NKKGNPSATL 125
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+E+R ++E+ GLT SAG++ N+ +AK+ SD NKPNGQ + D V FI L ++
Sbjct: 126 IAKEIRQKIFEKTGLTASAGISVNKFVAKIASDYNKPNGQKTVNPDE--VEAFIEVLDVK 183
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
K GIGKVT + + GI T ++ K L F +S F+ ++ G+ +
Sbjct: 184 KFYGIGKVTAEKMYQL-GIYTGLDLKNKTLEYLEQHFGNSGQAFY-NLSRGISYSQVKPN 241
Query: 341 RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R KSI +ERTF+ + + +L IA + ++K + G+T+TLK+K + F +T
Sbjct: 242 RQMKSIGAERTFNENLSSEIYMEERLENIASEIERRIKKYKISGKTITLKIKYSDFTQQT 301
Query: 400 RAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDK 444
R+ TL +I+ I++ A LL E L S+RL+G+ + N ++
Sbjct: 302 RSKTLPYFIADKSLIMETAKELLYQERLKDSVRLLGISLNNLNTNQ 347
>gi|241759928|ref|ZP_04758028.1| DNA polymerase IV [Neisseria flavescens SK114]
gi|241319936|gb|EER56332.1| DNA polymerase IV [Neisseria flavescens SK114]
Length = 352
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 133/344 (38%), Positives = 194/344 (56%), Gaps = 14/344 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LKG P+ V GT S+IC A+YEAR+FG+ +AM A
Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGLPVVVAWDGTRSVICAASYEARKFGLHSAMSVATA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+ +FVP F Y S VF +Y SLDEAYLD+T+ E E
Sbjct: 64 KRLCPQAVFVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTQNF-ENVPYASE 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A+ +R ++EE GLT SAG+APN+ LAK+ SD KPNGQFVLP + +M F+ SLP+
Sbjct: 123 VAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQK--IMAFLESLPLG 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G+GKVT + + GI T ++ ++G LL + + L+ G+ +
Sbjct: 181 KIPGVGKVTLKKM-NALGIQTAGDLRRFERGELLNHFGRYGYRLYDLARGIDERPVKAER 239
Query: 340 ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R + IS+E T A + L +AE L ++++ + + +TLKLKT F + T
Sbjct: 240 ERLQ--ISTEITLPEDLSLAQVSSHLPHLAEDLWRQIERKNVEAKGVTLKLKTHDFRIIT 297
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 440
R++T + S +L+ A LL+ P + RLIG+ V+
Sbjct: 298 RSLTYSSVLPDSTSLLQAAHTLLQRIPPQREDAFRLIGIGVSHL 341
>gi|420238527|ref|ZP_14742925.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium sp. CF080]
gi|398086197|gb|EJL76826.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium sp. CF080]
Length = 366
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 199/355 (56%), Gaps = 19/355 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+GKP+AVG ++ A+YEAR FGV +AMP A
Sbjct: 10 RKIIHVDMDAFYASVEQRDNPDLRGKPLAVGGSAARGVVAAASYEARAFGVHSAMPSVTA 69
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFVP F Y S R++F +Y SLDEAYLD+TE + I+ E
Sbjct: 70 KRKCPDLIFVPPRFDVYKAISQQIREIFAEYTMLIEPLSLDEAYLDVTENLKGMAIA-TE 128
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ PN+ +F+ +LP+
Sbjct: 129 IALEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPNNG---PSFVEALPV 185
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T +R + GI T ++ K + + +F V G+
Sbjct: 186 KKFHGVGPATAERMRKL-GIETGLDLKSKSLIFLQEHFGKSGPYFYGVARGIDERRVRAD 244
Query: 341 RFRKSISSERTFSVTEDKALLYRKLAEIAEM---LSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +E TF ED L R AE+ + + + +G+ G+T+T+K+K + F
Sbjct: 245 RIRKSVGAEDTF--VEDIDDLERATAELKPLSDKIWLYCEAQGISGKTVTVKIKYSDFTQ 302
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPSD 450
TR+ T ++ D+ AS LL P S+RL+G+ ++ +D+ PSD
Sbjct: 303 ATRSRTGIAPFANMSDVFDAASALLATVYPFKRSVRLLGVTLSSLTKDQ---PSD 354
>gi|33592070|ref|NP_879714.1| DNA polymerase IV [Bordetella pertussis Tohama I]
gi|33596271|ref|NP_883914.1| DNA polymerase IV [Bordetella parapertussis 12822]
gi|33602069|ref|NP_889629.1| DNA polymerase IV [Bordetella bronchiseptica RB50]
gi|384203372|ref|YP_005589111.1| DNA polymerase IV [Bordetella pertussis CS]
gi|408415972|ref|YP_006626679.1| DNA-damage-inducible protein p [Bordetella pertussis 18323]
gi|410419849|ref|YP_006900298.1| DNA-damage-inducible protein p [Bordetella bronchiseptica MO149]
gi|410473391|ref|YP_006896672.1| DNA-damage-inducible protein p [Bordetella parapertussis Bpp5]
gi|412338221|ref|YP_006966976.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 253]
gi|427814305|ref|ZP_18981369.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 1289]
gi|427821228|ref|ZP_18988291.1| DNA-damage-inducible protein p [Bordetella bronchiseptica D445]
gi|427821749|ref|ZP_18988811.1| DNA-damage-inducible protein p [Bordetella bronchiseptica Bbr77]
gi|33566040|emb|CAE36936.1| DNA-damage-inducible protein p [Bordetella parapertussis]
gi|33571714|emb|CAE41211.1| DNA-damage-inducible protein p [Bordetella pertussis Tohama I]
gi|33576507|emb|CAE33585.1| DNA-damage-inducible protein p [Bordetella bronchiseptica RB50]
gi|332381486|gb|AEE66333.1| DNA polymerase IV [Bordetella pertussis CS]
gi|401778142|emb|CCJ63525.1| DNA-damage-inducible protein p [Bordetella pertussis 18323]
gi|408443501|emb|CCJ50161.1| DNA-damage-inducible protein p [Bordetella parapertussis Bpp5]
gi|408447144|emb|CCJ58816.1| DNA-damage-inducible protein p [Bordetella bronchiseptica MO149]
gi|408768055|emb|CCJ52813.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 253]
gi|410565305|emb|CCN22860.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 1289]
gi|410572228|emb|CCN20497.1| DNA-damage-inducible protein p [Bordetella bronchiseptica D445]
gi|410587014|emb|CCN02044.1| DNA-damage-inducible protein p [Bordetella bronchiseptica Bbr77]
Length = 361
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 136/367 (37%), Positives = 204/367 (55%), Gaps = 40/367 (10%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGF 159
L R +H+DMDAFYA+VE NP+L+G P+ V G S++C A+YEARR+GV +AM
Sbjct: 4 LQRKIVHIDMDAFYASVEQRDNPALRGLPVVVAWTGPRSVVCAASYEARRYGVHSAMAAA 63
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-S 218
A++LCP+ ++VP DF +Y S R +F ++ SLDEAYLD+T C + G+ S
Sbjct: 64 RAQRLCPDAVYVPPDFNRYREVSRQVRAIFARHTDLIEPLSLDEAYLDVT--CNKLGLAS 121
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
E+A+ +R + EE GLT SAGVAPN+ LAK+ SD NKP+G FV+ R V+ F+ L
Sbjct: 122 ATEVAQIIRRQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVIKPSR--VLDFLQPL 179
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF----------FLSV 328
P+RK+ G+GKV + L + GI T ++ + HS A+ +
Sbjct: 180 PVRKVPGVGKVMQARL-EQLGIQTVGDLSR----------HSVAELEQRFGRYGVRLYEL 228
Query: 329 GLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR----GR 384
G+ + + +S+E TF D L L E E L+A + ++G + GR
Sbjct: 229 ARGIDERAVQADQPAQQVSAETTF----DTDLALEALGEALERLAAKVWEQGAKKGRIGR 284
Query: 385 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPV--SLRLIGLRVTQFN 441
T LKLKT F + TR++TL + S+ ++ A L + +LP RL+G+ ++ F
Sbjct: 285 TTVLKLKTDRFRILTRSLTLMQPPGSAAELAAIARQLCTRVDLPAHTRYRLVGVGMSNFP 344
Query: 442 EDKVRAP 448
+ + AP
Sbjct: 345 DAQAEAP 351
>gi|225010252|ref|ZP_03700724.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-3C]
gi|225005731|gb|EEG43681.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-3C]
Length = 365
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 141/353 (39%), Positives = 206/353 (58%), Gaps = 11/353 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI---CTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE L P L+G P+AVG A+YEAR FGVR+AM G +A
Sbjct: 8 RKIIHVDMDAFFASVEQLDQPELRGIPLAVGGGGKRGVVAAASYEARAFGVRSAMSGIMA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+LIFVP F +Y S +F ++ SLDEAYLD+T ++ S
Sbjct: 68 SRLCPQLIFVPPRFERYKEVSAQISTIFRQHTDLVEPLSLDEAYLDVTH-HKKGNPSASL 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA E+RT + + GL SAG++ N+ +AK+ SDINKPNGQ +P + V++F+ +L IR
Sbjct: 127 IASEIRTEILKLTGLHASAGISINKFVAKIASDINKPNGQKTIPPEE--VLSFLENLDIR 184
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
K GIGKVT + + GI T ++ L+ L F S F+ +V G+ +
Sbjct: 185 KFFGIGKVTADKMYGL-GIFTGADLKLKSEDFLETHFGKSGRYFYRAVR-GVHHSEVSPE 242
Query: 341 RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R +KS+ +ERTF+ + L K+ +AE LS + + L G+T+TLKLK A F +T
Sbjct: 243 RIQKSVGAERTFNENISSEVFLEGKIIALAEELSKRLGRSKLSGKTITLKLKYADFNTQT 302
Query: 400 RAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSDP 451
R+ TL +I++ + I+ A+ LL E L S+RL+G+ + + N +K A P
Sbjct: 303 RSKTLPYFIANKDLIIAAATELLYQEVLSNSVRLLGISMGKLNNEKKEAIKGP 355
>gi|254525120|ref|ZP_05137175.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
gi|219722711|gb|EED41236.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
Length = 364
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 143/351 (40%), Positives = 198/351 (56%), Gaps = 24/351 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FGVR+AMP A
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPALRA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+TE SGIE
Sbjct: 65 ERLCPDAIFVPPDFARYKAVSRQVREIFLRHTDLVEPLSLDEAYLDVTEPK-----SGIE 119
Query: 222 ----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V F++
Sbjct: 120 LATDIARTIREQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--VEAFLTP 177
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ ++ G+GKV E L GI TC ++ Q + S + G+
Sbjct: 178 LPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGVDERPV 236
Query: 338 PQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ +SISSE TF+ ED L L + ++AE +K G T+ LKLKTA F
Sbjct: 237 EADQQVQSISSEDTFA--EDLLLEDLSEAIVQLAEKTWNATRKTERVGHTVVLKLKTAQF 294
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 442
+ TR+ T + S E+ L+ ++ L+A +LP RL+G+ + F E
Sbjct: 295 RILTRSFTPDRPPDSMEE-LRDIALALRARVDLPAETRYRLVGVGLGGFRE 344
>gi|45383754|ref|NP_989514.1| DNA polymerase kappa [Gallus gallus]
gi|26983954|gb|AAM80560.1| DNA polymerase kappa [Gallus gallus]
Length = 867
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 134/187 (71%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM G+DKEK+ K++ E SKGSK++ENE +K+ + Q+IE M K+T + Q
Sbjct: 26 KAGMQGLDKEKINKIIMEASKGSKFYENELKKDQQVNQRIEKMMQLKEKITQQQLLKAQL 85
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +LELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 86 QVDKLVLELERSRNLSCTIVHIDMDAFYAAVEMRDNPELKEKPIAVGSMSMLSTSNYHAR 145
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA+KLCP L VP +F KY S +++ +YDP+FM LDEAYL++
Sbjct: 146 RFGVRAAMPGFIAKKLCPHLTIVPLNFEKYRKVSKEVKEILAEYDPHFMPMGLDEAYLNV 205
Query: 209 TEVCRER 215
TE ER
Sbjct: 206 TEHLEER 212
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ + +R AV+ FI
Sbjct: 280 GTSAEEAVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDRNKPNGQCRISPERQAVLDFI 339
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ FL + LGLGST
Sbjct: 340 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEASWRSFLDISLGLGST 398
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + RKS+S+ERTFS Y E+ L+ D+QKEGL+G+T+TLKLK +F
Sbjct: 399 HLEKDGERKSMSTERTFSEISKAEDQYSLCQELCRELAQDLQKEGLKGKTVTLKLKNVNF 458
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 449
EV+TRA T+ +S+ ++I A +LL E+ P+ +RL+G+RV+ F ++ +
Sbjct: 459 EVKTRASTVLSSVSTEDEIFAVAKMLLGTEIDSVAPHPLRIRLMGVRVSGFLSEEEKKYQ 518
Query: 450 DPTQKTLTNFMTSG 463
QK++ +F+ SG
Sbjct: 519 ---QKSIKSFLKSG 529
>gi|334325286|ref|XP_001368809.2| PREDICTED: DNA polymerase kappa [Monodelphis domestica]
Length = 856
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 137/187 (73%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E SKGS+++ENE +KE + Q+IE+M + +++T+ + Q
Sbjct: 16 KAGMEGLDKEKINKIIMEASKGSRFYENELKKEKQVNQRIENMMQQKSQITTKQLWKAQL 75
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE +RDL + +H+DMDAFYAAVE NP L+ KP+AVG+M M+ T+NY AR
Sbjct: 76 QVDKFAMELEQSRDLHCTIIHIDMDAFYAAVEMRDNPELRDKPIAVGSMRMLATSNYHAR 135
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+L V +F KY S R++ YDPNFMA SLDEAYL+I
Sbjct: 136 RFGVRAAMPGFIAKRLCPQLTIVAPNFDKYRKISKEVREILADYDPNFMAMSLDEAYLNI 195
Query: 209 TEVCRER 215
T+ ER
Sbjct: 196 TKHLEER 202
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 170/265 (64%), Gaps = 16/265 (6%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +P R AVM FI
Sbjct: 280 GTSAEEVVKEIRFRIKQKTSLTASAGIAPNTVLAKVCSDKNKPNGQYQIPPTRQAVMDFI 339
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L+ GI TC ++ QK +LL +FS ++ FL + LGLGST
Sbjct: 340 KDLPIRKVPGIGKVTEKMLK-ALGIITCSDLYQKRALLSLLFSETSWHSFLHISLGLGST 398
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ RKS S ERTF+ LY E+ L+ D+Q+EGL+G+T+T+KLK +F
Sbjct: 399 QMERDGERKSRSIERTFTEISKAEELYSLCQELCSDLAQDLQREGLKGKTVTIKLKNVNF 458
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF-NEDKVRAP 448
EV+TRA T+ +S++E+I A LLKAE+ P+ LRL+G+R++ F NE+
Sbjct: 459 EVKTRASTVAAVVSTAEEIFAIAKELLKAEIDADYPQPLRLRLMGVRISGFANEE----- 513
Query: 449 SDPT--QKTLTNFMTSGHASKKIVG 471
DP Q+++ +F+ +G S +G
Sbjct: 514 -DPKNRQRSIISFLKAGGHSLDTIG 537
>gi|54020922|ref|NP_001005705.1| DNA-directed DNA polymerase kappa [Xenopus (Silurana) tropicalis]
gi|49522302|gb|AAH75278.1| polymerase (DNA directed) kappa [Xenopus (Silurana) tropicalis]
Length = 310
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 135/187 (72%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ + +KGS++++NE +K+ + Q+IE + + ++LT I Q
Sbjct: 26 KAGMEGLDKEKINKIIMDATKGSRFYDNELKKDQQVNQRIEKLMQQKSQLTDQQIKKAQI 85
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ LELE RDLSR +HVDMDAFYAAVE +P LK KPMAVG+ SM+ T+NY AR
Sbjct: 86 QVDRLALELERNRDLSRIIVHVDMDAFYAAVEMRDSPELKDKPMAVGSNSMLSTSNYLAR 145
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA+KLCP L VP +F KY S R++ +YDPNF+ SLDEAYLDI
Sbjct: 146 RFGVRAAMPGFIAKKLCPTLKIVPPNFDKYRAVSSEVREILAQYDPNFLPMSLDEAYLDI 205
Query: 209 TEVCRER 215
T+ ER
Sbjct: 206 TDHLSER 212
>gi|424666909|ref|ZP_18103934.1| DNA polymerase IV [Stenotrophomonas maltophilia Ab55555]
gi|401069578|gb|EJP78099.1| DNA polymerase IV [Stenotrophomonas maltophilia Ab55555]
Length = 364
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 142/351 (40%), Positives = 197/351 (56%), Gaps = 24/351 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FGVR+AMP A
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVRA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+ IFVP DF +Y S R +F ++ SLDEAYLD+TE SGIE
Sbjct: 65 ERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVTEPK-----SGIE 119
Query: 222 ----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V F++
Sbjct: 120 LATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--VDAFLAP 177
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ ++ G+GKV E L GI TC ++ Q + S + G+
Sbjct: 178 LPVNRVPGVGKVMEGKL-AARGIATCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPV 236
Query: 338 PQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ +SISSE TF+ ED L L + ++A +K G T+ LKLKTA F
Sbjct: 237 EPDQQVQSISSEDTFA--EDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLKLKTAQF 294
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 442
+ TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ + F E
Sbjct: 295 RILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVGLGGFRE 344
>gi|383317865|ref|YP_005378707.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Frateuria aurantia DSM 6220]
gi|379044969|gb|AFC87025.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Frateuria aurantia DSM 6220]
Length = 370
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 202/353 (57%), Gaps = 25/353 (7%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGF 159
+ R LH+DMDAFYA+VE NPSL+G+P+ V G S++C A+YEARRFG+ +AMP
Sbjct: 1 MMRKVLHIDMDAFYASVEQRDNPSLRGRPVVVAWKGPRSVVCAASYEARRFGIHSAMPAM 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
A +LCP +FVP DF +Y S +++F ++ SLDEAYLD+T S
Sbjct: 61 RAERLCPTAVFVPPDFARYKRVSGQVQEIFNRHTDLVEPLSLDEAYLDVTTNTLALP-SA 119
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
++A +R +++EE GLT SAGVAPN+ LAK+ SD NKP+G +V+ R V+ F+S LP
Sbjct: 120 TQVARMIRAAIHEETGLTASAGVAPNKFLAKIASDWNKPDGLYVIRPSR--VLEFLSGLP 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL---SVGLGLGSTN 336
+ K+ G+GKV E LRD GI +++ ++ S + L + +G+ +
Sbjct: 178 VGKLPGVGKVMESRLRD-LGIQRVDQLRER---TVDQLERSFGRWGLRLHQLSMGIDESA 233
Query: 337 TPQARFRKSISSERTFSVTEDKAL-----LYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
R RK IS+E TF +D+ L R+LAE A S +++ T+ LKLK
Sbjct: 234 VMPHRVRKQISTEDTFP--DDRRLDQLDTPVRQLAERA--WSTAVRQAMSHPHTIVLKLK 289
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFN 441
T F +R+ TL S+ DI++ A +L+ + LP RL+G+ +T F
Sbjct: 290 THDFINLSRSQTLPSPPRSAADIIEVAKMLMNRVTLPADTRYRLVGIGLTGFK 342
>gi|432875108|ref|XP_004072678.1| PREDICTED: DNA polymerase kappa-like [Oryzias latipes]
Length = 871
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 143/217 (65%), Gaps = 4/217 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+D++K+ ++ E SKGSK++ENE +K+ + Q+IE M + A +T + Q
Sbjct: 23 KAGMEGLDRDKINNIIMESSKGSKFYENELKKDQQVNQRIEKMMLQKANITQAQLKKAQA 82
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+K L LE +RDLSR +HVDMDAFYAAVE LK KPMAVG+MSM+ T+NY AR
Sbjct: 83 QVEKMALALERSRDLSRVIVHVDMDAFYAAVEMRDCAELKTKPMAVGSMSMLSTSNYLAR 142
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
++GVRAAMPGFIA+KLC +L+ VP +F KY SD R++F YDP+F+ SLDEAYLD
Sbjct: 143 KYGVRAAMPGFIAKKLCSDLVIVPPNFDKYRAVSDEIREIFADYDPDFLPMSLDEAYLDF 202
Query: 209 TEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPN 245
TE +R E LRT Y +T + PN
Sbjct: 203 TEHLEQRQT----WPESLRTHRYSSKSITTAVKETPN 235
Score = 206 bits (523), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/264 (44%), Positives = 165/264 (62%), Gaps = 11/264 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ LP R AVM FI
Sbjct: 275 GTSVEEAVREMRFRIEQKTMLTASAGIAPNMMLAKVCSDKNKPNGQYRLPPTREAVMDFI 334
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LP+RK+ GIGKV+E +L + I C + Q+ +LL +FS + F+ V LGLGST
Sbjct: 335 QDLPVRKVCGIGKVSEKML-NALEITKCSHLGQQMALLSLLFSETACQNFMEVSLGLGST 393
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ RKS+S ERTF D Y E+ + L+ DM+KEGL+G+T++LKLK +F
Sbjct: 394 RISRHEERKSMSIERTFKELSDAEEQYSLCRELCKDLAEDMKKEGLKGKTVSLKLKNVNF 453
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 449
EV+TRA TLQ +++ E++ A LLK E+ P+ LRL+G+R++ F +A
Sbjct: 454 EVKTRAQTLQCAVAAEEELFAVAKDLLKTEIDNESPHPLKLRLMGVRMSAFVSSDHKA-- 511
Query: 450 DPTQKTLTNFMTSGHA-SKKIVGD 472
PTQK++ F+ SG + S +I G+
Sbjct: 512 -PTQKSILGFLKSGSSGSSEIKGE 534
>gi|66807269|ref|XP_637357.1| UMUC-like DNA-repair protein [Dictyostelium discoideum AX4]
gi|60465773|gb|EAL63849.1| UMUC-like DNA-repair protein [Dictyostelium discoideum AX4]
Length = 517
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/268 (39%), Positives = 172/268 (64%), Gaps = 5/268 (1%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+ VD E + ++ + S G+ + E ER ++ IE + ++ ++ P YQ+
Sbjct: 7 KAGMEKVDIESINSMLKQFSVGTHFQEKLERDSKRTREYIEGILSKLNEI--PDTEEYQE 64
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D + EL + D SR+++H+DMDAFYA VE + N L G P+AVG++ M+ T+NY AR
Sbjct: 65 KVDSYLTELTSKIDQSRTFIHIDMDAFYANVEEMDNKELIGHPVAVGSIDMLVTSNYAAR 124
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
+GVR+ +PG +A KLCP LI +P+ +Y S + R + K+D N+++ SLDE +DI
Sbjct: 125 AYGVRSGLPGLLAMKLCPHLIILPSRMDRYREVSLIIRNILYKFDKNYVSPSLDEGCIDI 184
Query: 209 TEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 267
TE ++ ++GI++A +L+ ++E+ LTCS G++ + LL+K+ S+INKPNG F L D
Sbjct: 185 TEYLKDNENLTGIDVANQLQNDIFEKTTLTCSMGISCSPLLSKISSEINKPNGYFYL--D 242
Query: 268 RMAVMTFISSLPIRKIGGIGKVTEHILR 295
+ FI ++ I+K+ GIGKV + +L+
Sbjct: 243 KQYSQEFIKTIQIKKLPGIGKVRQELLK 270
>gi|365961688|ref|YP_004943255.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
columnare ATCC 49512]
gi|365738369|gb|AEW87462.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
columnare ATCC 49512]
Length = 358
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/348 (39%), Positives = 205/348 (58%), Gaps = 17/348 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE + +P L G P+AVG ++ A+YEAR+FGVR+AM G A
Sbjct: 6 RKIIHIDMDAFYASVEQMDHPELIGLPIAVGGSEIRGVVSAASYEARKFGVRSAMTGIQA 65
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCPELIFV F +Y S RK+F +Y SLDEAYLD+T+ ++ S
Sbjct: 66 KRLCPELIFVKPRFERYREISLKIRKIFYEYTDLVEPLSLDEAYLDVTQ-NKKNNPSATL 124
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + +E GLT SAG++ N+ +AK+ SD NKPNGQ + P+D V F+ SL I
Sbjct: 125 IASEIRQRIVDEVGLTASAGISINKFVAKIASDYNKPNGQKTIHPDD---VTLFLESLDI 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+K GIGKVT + + GI T +++ K L F S ++ L G +N+P
Sbjct: 182 KKFYGIGKVTTEKMYQL-GIYTGQDLKSKTIEYLEEHFGKSGTHYY---HLVRGISNSPV 237
Query: 340 A--RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R KS+++E TF + + KL IA+ L+ +QK L G+T+TLK+K + F
Sbjct: 238 KPNRASKSVAAEHTFYTNLTSEIFMEEKLERIADELAKRLQKHKLSGKTVTLKIKYSDFS 297
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 443
+TR+ TL +++ +L+ A LL + + S+RL+G+ ++ N +
Sbjct: 298 QQTRSKTLPYFVADRNVLLEVAKELLYQDRMKDSVRLLGISLSNLNTE 345
>gi|456737807|gb|EMF62484.1| DNA polymerase IV [Stenotrophomonas maltophilia EPM1]
Length = 364
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 142/351 (40%), Positives = 197/351 (56%), Gaps = 24/351 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FGVR+AMP A
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVRA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+ IFVP DF +Y S R +F ++ SLDEAYLD+TE SGIE
Sbjct: 65 ERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVTEPK-----SGIE 119
Query: 222 ----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V F++
Sbjct: 120 LATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--VDAFLAP 177
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ ++ G+GKV E L GI TC ++ Q + S + G+
Sbjct: 178 LPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPV 236
Query: 338 PQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ +SISSE TF+ ED L L + ++A +K G T+ LKLKTA F
Sbjct: 237 EPDQQVQSISSEDTFA--EDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLKLKTAQF 294
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 442
+ TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ + F E
Sbjct: 295 RILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVGLGGFRE 344
>gi|418056114|ref|ZP_12694168.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
gi|353210392|gb|EHB75794.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
Length = 360
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 140/351 (39%), Positives = 205/351 (58%), Gaps = 20/351 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFI 160
+R +HVDMDAFYA+VE NP L+GK +AVG + ++ A+YEAR FGVR+AMP
Sbjct: 6 TRKIIHVDMDAFYASVEQRDNPELRGKAIAVGYGAKRGVVAAASYEARAFGVRSAMPSTK 65
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 219
A + CP L+FVP F Y S R +F +Y P SLDEAYLD+TE RG+ +
Sbjct: 66 ALRQCPSLVFVPPRFEIYRAVSQQIRAIFARYTPLIEPLSLDEAYLDVTENL--RGLPTA 123
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
+ A E+R + E GLT SAGV+ N+ LAK+ SD+ KPNGQFV+P R A FI LP
Sbjct: 124 SDTAAEIRARILAETGLTASAGVSYNKFLAKLASDVRKPNGQFVIPPQRGA--EFIEGLP 181
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
+++ G+G VT + + GI T ++ Q L F S A ++ ++ G
Sbjct: 182 VKQFHGVGPVTAEKM-NALGIQTGADLRAQSLEFLQQHFGRSGA-WYYAIARGEDDRPVE 239
Query: 339 QARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKS SE TFS ED+ L + + E+A+ + A +K G T+T+K+K A F
Sbjct: 240 PNRPRKSSGSETTFS--EDRLLPAEIEAGVLEMADDVWAWCEKNQSFGATVTVKIKFADF 297
Query: 396 EVRTRAVTLQKYISSSEDILKHASV-LLKAELPVS--LRLIGLRVTQFNED 443
+ TR+ T + + ++ D+L S+ L+++ PV+ +RL+G+ V++F+ D
Sbjct: 298 RIVTRSRTASRPV-TAHDLLHEISLALVRSIYPVTTGVRLVGVSVSKFSSD 347
>gi|390958702|ref|YP_006422459.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Terriglobus roseus DSM 18391]
gi|390413620|gb|AFL89124.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Terriglobus roseus DSM 18391]
Length = 370
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 207/363 (57%), Gaps = 23/363 (6%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
+R +HVDMDAFYA+VE +P+L+G+P+ V G S++C A+YEARRFG+R+AMP
Sbjct: 6 TRKIVHVDMDAFYASVEQRDDPALRGRPVVVAWKGPRSVVCAASYEARRFGIRSAMPAVR 65
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A +LCPE +FVP DFT+Y S R +F ++ SLDEAYLD+T + +
Sbjct: 66 AERLCPEAVFVPPDFTRYKAVSHAVRAIFERHTDAIEPLSLDEAYLDVT-TNKTSLPTAT 124
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 279
IA+ +R +Y+E LT SAG+APN+ LAK+ SD KPNGQFV+ P++ F+ +LP
Sbjct: 125 LIAKSIRQQIYDELNLTASAGIAPNKFLAKIASDWRKPNGQFVIQPHE---AEEFLRTLP 181
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVG-LGLGSTNTP 338
+ +I G+GKVTE + + GI ++ ++ A + L + L G + P
Sbjct: 182 VGRIPGVGKVTEARMAEA-GIKLVGDIY---AMSLATLEQHFGSYSLRLHELARGIDHNP 237
Query: 339 QA--RFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
R RK +S+E TF ED L L + +AE + + R +T+ LKLKT
Sbjct: 238 VVSNRVRKQVSAEDTFP--EDLPLTELEAHVCRLAEKVWKASEGNARRAKTVVLKLKTKE 295
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFN-EDKVRAPSD 450
F TR++T + +S+ ED++ A L + +LP RL+G+ +T F D A S+
Sbjct: 296 FNSLTRSLTPRTPVSTCEDLISTALGLRDRVDLPAQQLYRLVGVGLTNFELRDDSVADSE 355
Query: 451 PTQ 453
P +
Sbjct: 356 PAE 358
>gi|319638499|ref|ZP_07993261.1| DNA polymerase IV [Neisseria mucosa C102]
gi|317400248|gb|EFV80907.1| DNA polymerase IV [Neisseria mucosa C102]
Length = 352
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 131/344 (38%), Positives = 194/344 (56%), Gaps = 14/344 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LKG P+ V GT S+IC A+YEAR+FG+ +AM A
Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGLPVVVAWDGTRSVICAASYEARKFGLHSAMSVATA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+ +FVP F Y S VF +Y SLDEAYLD+T+ + + E
Sbjct: 64 KRLCPQAVFVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTQNFKNIPYAS-E 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A+ +R ++EE GLT SAG+APN+ LAK+ SD KPNGQFVLP + +M F+ SLP+
Sbjct: 123 VAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPPK--IMAFLESLPLG 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G+GKVT + + G+ T ++ ++G LL + + L+ G+ +
Sbjct: 181 KIPGVGKVTLKKM-NALGMQTAGDLRRFERGELLNHFGRYGYRLYDLARGIDERPVKAER 239
Query: 340 ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R + IS+E T A L +AE L ++++ + + +TLKLKT F + T
Sbjct: 240 ERLQ--ISTEITLPEDLSLAQASSHLPHLAEDLWRQIERKNVEAKGVTLKLKTHDFRIIT 297
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 440
R++T + S +L+ A LL+ P + RLIG+ V+
Sbjct: 298 RSLTYSSVLPDSASLLQAAHTLLQRIPPQREDAFRLIGIGVSHL 341
>gi|386716938|ref|YP_006183264.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
gi|384076500|emb|CCH11081.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
Length = 364
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 146/354 (41%), Positives = 203/354 (57%), Gaps = 30/354 (8%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FGVR+AMP A
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPALRA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+TE SGIE
Sbjct: 65 ERLCPDAIFVPPDFARYKAVSRQVREIFLRHTDLVEPLSLDEAYLDVTEPK-----SGIE 119
Query: 222 ----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V F+
Sbjct: 120 LATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--VDAFLLP 177
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV---GLGLGS 334
LP+ ++ G+GKV E L GI TC + L++ SL+ + F S+ G+
Sbjct: 178 LPVNRVPGVGKVMEGKL-AARGIVTCGD-LRRWSLVD--LEEAFGSFGRSLYNRARGIDE 233
Query: 335 TNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
+ +SISSE TF+ ED L L + ++AE +K G T+ LKLKT
Sbjct: 234 RPVEPDQQVQSISSEDTFA--EDLLLEDLGEAIVQLAEKTWNATRKTERVGHTVVLKLKT 291
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 442
A F + TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ + F E
Sbjct: 292 AQFRILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVGLGGFRE 344
>gi|194364233|ref|YP_002026843.1| DNA polymerase IV [Stenotrophomonas maltophilia R551-3]
gi|226738241|sp|B4SIF5.1|DPO4_STRM5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|194347037|gb|ACF50160.1| DNA-directed DNA polymerase [Stenotrophomonas maltophilia R551-3]
Length = 356
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 141/351 (40%), Positives = 199/351 (56%), Gaps = 24/351 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FGVR+AMP A
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVRA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+TE SG+E
Sbjct: 65 ERLCPDAIFVPPDFARYKAVSQQVREIFLRHTDLVEPLSLDEAYLDVTEPK-----SGME 119
Query: 222 ----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V F+
Sbjct: 120 LATDIARTIRAQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--VDAFLLP 177
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ ++ G+GKV E L GI TC ++ Q + S + G+
Sbjct: 178 LPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGVDERPV 236
Query: 338 PQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ +SISSE TF+ ED L L + ++AE +K G T+ LKLKTA F
Sbjct: 237 EPDQQVQSISSEDTFA--EDLPLEDLGEAIVQLAEKTWNATRKTERVGHTVVLKLKTAQF 294
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 442
+ TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ ++ F +
Sbjct: 295 RILTRSFTPERPPESMEE-LRDIALALRARVDLPADTRYRLVGVGLSGFRD 344
>gi|86134767|ref|ZP_01053349.1| DNA polymerase IV [Polaribacter sp. MED152]
gi|85821630|gb|EAQ42777.1| DNA polymerase IV [Polaribacter sp. MED152]
Length = 360
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 206/347 (59%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI---CTANYEARRFGVRAAMPGFIA 161
R +HVDMDA+YA+V L NP L+GK +AVG A+YEAR+FGV++AM +A
Sbjct: 8 RKIIHVDMDAYYASVAELDNPELRGKAIAVGGGGDRGVVSAASYEARKFGVKSAMSNVLA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP +IFV +DF +Y S R++F +Y SLDEAYLD+T ++ S E
Sbjct: 68 KQKCPHIIFVKSDFARYKELSAQIREIFFEYTDLVEPLSLDEAYLDVTN-NKKNNPSANE 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA E+R +Y++ GL SAG++ N+ +AKV SDINKPNGQ + + V+ F+ LP+
Sbjct: 127 IAREIRQKIYDKTGLRASAGISINKFIAKVASDINKPNGQKTIHPEE--VIQFLEELPVN 184
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K G+GKVT + ++ GI + L+K SL L +F S ++ ++ G+ +
Sbjct: 185 KFYGVGKVTAAKMYNL-GIFVGND-LKKRSLEELTQLFGKSGLHYY-NIVRGIHKSEVKP 241
Query: 340 ARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +ERTF +++ + +L KL +IA+ + M K +G+T+TLK+K + F
Sbjct: 242 NRIRKSVGAERTFRENISSEIYML-DKLNDIADEIEKRMHKSNTKGKTITLKIKYSDFTQ 300
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 443
+TR+ T+ ++IS ++ LL E L S+RL+GL + N +
Sbjct: 301 QTRSKTVGQFISKKKEFFPVVKELLYQEKLENSVRLLGLSFSNLNNN 347
>gi|311747596|ref|ZP_07721381.1| DNA polymerase IV [Algoriphagus sp. PR1]
gi|126575578|gb|EAZ79888.1| DNA polymerase IV [Algoriphagus sp. PR1]
Length = 365
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 196/330 (59%), Gaps = 17/330 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE + +P +GKP+ VG ++ A+YEAR++GV +AM IA
Sbjct: 10 RKIIHVDMDAFYASVEQMDHPEWRGKPLVVGGSRARGVVAAASYEARKYGVYSAMASSIA 69
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
+ CP LIF F +Y S + R+VF +Y SLDEA+LD+TE ++GI S I
Sbjct: 70 VRKCPHLIFAKPRFDRYRELSLMIREVFYEYTDLVEPLSLDEAFLDVTE--NKKGINSAI 127
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLP 279
IA ++R + E+ L SAGV+ N+ LAK+ SD+NKPNGQ ++LP D F+ LP
Sbjct: 128 LIARQIRQKIKEKTNLNASAGVSYNKFLAKIASDLNKPNGQAYILPED---AEEFLEKLP 184
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTP 338
I K GIGKVT ++ + GI+ ++ Q L F S +F ++ G+ +
Sbjct: 185 IGKFFGIGKVTAEKMQKI-GIHNGADLKQFSLQFLSKKFGKSGLHYF-NIVRGIHLSEVQ 242
Query: 339 QARFRKSISSERTFSV--TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+S+E TF V T D+ LL KL I E + + K G++GRT+TLKLK + F
Sbjct: 243 PHRVRKSLSAENTFEVDLTTDEELL-NKLQPIYEEVIRRLDKSGIKGRTVTLKLKYSDFS 301
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAEL 426
++TR+ TL++Y E I + A LL+ E+
Sbjct: 302 LQTRSKTLEQY-PDKEMIWEIAKELLEQEV 330
>gi|255536316|ref|YP_003096687.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
gi|255342512|gb|ACU08625.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
Length = 360
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 191/324 (58%), Gaps = 13/324 (4%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG--TMSMICTANYEARRFGVRAAMPGFIA 161
+R +HVDMDAFYA+VE +P L+GKP+AVG ++ A+YEAR+FGVR+AMPG +A
Sbjct: 4 NRKIIHVDMDAFYASVEQHDHPELRGKPVAVGGGQYGVVAAASYEARKFGVRSAMPGRLA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
+ CP LI V F +Y S R +F +Y SLDEAYLD+TE ++GI S
Sbjct: 64 LEKCPHLIVVKPRFQRYKEISQQIRSIFNEYTDLVEPLSLDEAYLDVTE--NKKGIESAN 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA E+R +YEE GLT SAG++ N+ LAKV SD NKPNGQ + + ++ F+ LPI
Sbjct: 122 DIAREIRGRIYEETGLTASAGISVNKFLAKVASDYNKPNGQKTIHPTQ--ILEFMEELPI 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP 338
K GIGKVT + + ++ + L+ SL L +F S +++ +V G+ ++
Sbjct: 180 EKFYGIGKVTANKMHEMHIFKGAD--LKNKSLEELIRLFGKS-GNYYYNVVRGIHNSEVK 236
Query: 339 QARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R +KS++ E TF D+ ++ +L I+E L + K+ ++G+++TLK+K F
Sbjct: 237 PHRIQKSVAVEETFWDNLLDEEQVFAQLKTISEELEERLLKKEIKGKSITLKIKYKDFTQ 296
Query: 398 RTRAVTLQKYISSSEDILKHASVL 421
TR+ T Y + D + A L
Sbjct: 297 YTRSTTRDSYFGGAHDFFETARKL 320
>gi|190572635|ref|YP_001970480.1| DNA polymerase IV [Stenotrophomonas maltophilia K279a]
gi|226738242|sp|B2FLR2.1|DPO4_STRMK RecName: Full=DNA polymerase IV; Short=Pol IV
gi|190010557|emb|CAQ44166.1| putative DNA-damage-inducible protein p [Stenotrophomonas
maltophilia K279a]
Length = 364
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 141/351 (40%), Positives = 197/351 (56%), Gaps = 24/351 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FGVR+AMP A
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVRA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+ IFVP DF +Y S R +F ++ SLDEAYLD++E SGIE
Sbjct: 65 ERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVSEPK-----SGIE 119
Query: 222 ----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V F++
Sbjct: 120 LATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--VDAFLAP 177
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ ++ G+GKV E L GI TC ++ Q + S + G+
Sbjct: 178 LPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPV 236
Query: 338 PQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ +SISSE TF+ ED L L + ++A +K G T+ LKLKTA F
Sbjct: 237 EPDQQVQSISSEDTFA--EDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLKLKTAQF 294
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 442
+ TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ + F E
Sbjct: 295 RILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVGLGGFRE 344
>gi|325266910|ref|ZP_08133581.1| DNA-directed DNA polymerase IV [Kingella denitrificans ATCC 33394]
gi|324981651|gb|EGC17292.1| DNA-directed DNA polymerase IV [Kingella denitrificans ATCC 33394]
Length = 355
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/346 (36%), Positives = 192/346 (55%), Gaps = 10/346 (2%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFI 160
+R +H+DMDAFYA+VE P L+G P+ V S+IC A+YEAR FG+R+AM
Sbjct: 3 TRKIIHIDMDAFYASVELREQPHLRGLPVVVAWDSPRSVICAASYEARAFGLRSAMSAAR 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ +FVP F Y S ++F +Y +LDEAYLD++ +
Sbjct: 63 AKQLCPQAVFVPPHFDLYRQVSRQIHQIFHQYTDLVEPLALDEAYLDVSH-NKLSVPYAT 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
++A ++R ++++ GLT SAG+APN+ LAKV SD KPNGQFVLP ++A F+ LPI
Sbjct: 122 DVASQIRAQIFQQTGLTASAGIAPNKFLAKVASDWRKPNGQFVLPPPKIA--AFLHGLPI 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
KI G+G+ T L FG T ++ + F + G+ + +
Sbjct: 180 EKIPGVGQKTAQKLHR-FGWKTAGDVQAASRMQLVHLLGQWGYRFYDLVRGVDNRPVQPS 238
Query: 341 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
R R IS+E T + + L ++A +S MQ++ RG+T+TLKLKT+ F + TR
Sbjct: 239 RERVQISTEITVPDDLPREEIALHLPDLAHDISLQMQRKRTRGQTVTLKLKTSDFHIYTR 298
Query: 401 AVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQFNEDK 444
+ T + +E +LK A LL+ ++P RLIG+ ++ D+
Sbjct: 299 SQTYSSPLPDAESLLKAACTLLQ-KMPGEPEYRLIGIGISHLQPDR 343
>gi|225075588|ref|ZP_03718787.1| hypothetical protein NEIFLAOT_00602 [Neisseria flavescens
NRL30031/H210]
gi|224953010|gb|EEG34219.1| hypothetical protein NEIFLAOT_00602 [Neisseria flavescens
NRL30031/H210]
Length = 352
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 133/348 (38%), Positives = 193/348 (55%), Gaps = 22/348 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LKG P+ V GT S+IC A+YEAR+FG+ +AM A
Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGLPVVVAWDGTRSVICAASYEARKFGLHSAMSVATA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI- 220
++LCP+ +FVP F Y S VF +Y SLDEAYLD+T R I
Sbjct: 64 KRLCPQAVFVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVT-----RNFENIP 118
Query: 221 ---EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
E+A+ +R ++EE GLT SAG+APN+ LAK+ SD KPNGQFVLP + +M F+ S
Sbjct: 119 YASEVAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQK--IMAFLES 176
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LP+ KI G+GKVT + + G+ T ++ ++G LL + + L+ G+
Sbjct: 177 LPLGKIPGVGKVTLKKM-NALGMQTAGDLRRFERGELLNHFGRYGYRLYDLARGIDERPV 235
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ R + IS+E T A L +AE L ++++ + + +TLKLKT F
Sbjct: 236 KAERERLQ--ISTEITLPEDLSLAQASSHLPHLAEDLWRQIERKNVEAKGVTLKLKTHDF 293
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 440
+ TR++T + S +L+ A LL+ P + RLIG+ V+
Sbjct: 294 RIITRSLTYSSVLPDSASLLQAAHTLLQRIPPQREDAFRLIGIGVSHL 341
>gi|365877904|ref|ZP_09417398.1| DNA polymerase IV [Elizabethkingia anophelis Ag1]
gi|442586482|ref|ZP_21005311.1| DNA polymerase IV [Elizabethkingia anophelis R26]
gi|365754447|gb|EHM96392.1| DNA polymerase IV [Elizabethkingia anophelis Ag1]
gi|442563801|gb|ELR81007.1| DNA polymerase IV [Elizabethkingia anophelis R26]
Length = 363
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 190/310 (61%), Gaps = 13/310 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM--SMICTANYEARRFGVRAAMPGFIAR 162
R +HVDMDAFYA+VE NP LKGKP+AVG + ++ A+YEAR++GVR+AMP A+
Sbjct: 8 RKIIHVDMDAFYASVEQHDNPELKGKPIAVGGVHRGVVAAASYEARQYGVRSAMPSKTAQ 67
Query: 163 KLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGIE 221
+ CP LIFV F +Y S R++F +Y SLDEAYLD+TE ++GI S +
Sbjct: 68 QKCPNLIFVRPRFLRYKEISQQIRQIFYEYTDLVEPLSLDEAYLDVTE--NKKGIESANQ 125
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R ++E+ GLT SAG++ N+ LAKV SDINKPNGQ + P + V++F+ LPI
Sbjct: 126 IALEIRKKIFEKTGLTASAGISVNKFLAKVASDINKPNGQKTIHPQN---VLSFLEELPI 182
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K GIGKVT + + + I +++ K L +F S ++ +V G+ +
Sbjct: 183 EKFYGIGKVTANKM-NTLSIYKGKDLKNKSLEELVLLFGKSGKHYY-NVVRGIQYSEVKP 240
Query: 340 ARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R KS++ E TF D+ ++ K+ EI + L +++ G++G+TLTLK+K F +
Sbjct: 241 HRIAKSVAVEETFWEDLLDEDTVFEKIDEITDELFRRLERSGIKGKTLTLKIKYKDFTLF 300
Query: 399 TRAVTLQKYI 408
TR+ T +Y+
Sbjct: 301 TRSKTESQYL 310
>gi|296283336|ref|ZP_06861334.1| DNA polymerase IV [Citromicrobium bathyomarinum JL354]
Length = 401
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 133/348 (38%), Positives = 198/348 (56%), Gaps = 14/348 (4%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFI 160
+R +HVDMDAF+A+VE NP L+GKP+AVG S ++ A+YEAR+FGV++AMP
Sbjct: 39 TRKIIHVDMDAFFASVEQRDNPELRGKPVAVGGASGRGVVAAASYEARKFGVKSAMPSVT 98
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 219
A++LCP+LIFV + F Y SD R +F + SLDEAYLD+T + GI S
Sbjct: 99 AKRLCPDLIFVKSRFDAYREASDQIRAIFRHHTDLVEPLSLDEAYLDVT--VNKLGIASA 156
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSL 278
++A+ +R + + LT SAGV+ N+ LAK+ SD NKP+G V+ P + A F+ +L
Sbjct: 157 TQVAQMIRQEIRAKTRLTASAGVSYNKFLAKLASDQNKPDGMCVIRPGEGAA---FVQTL 213
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
PIR+ G+G E + + GI T ++ K + A S D+ G+
Sbjct: 214 PIRRFHGVGPRGEEKMARL-GIATGADLAAKDAAWLAQHFGSFGDYLYRAARGIDDRPVR 272
Query: 339 QARFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ ERTFSV +A R L EI +++ +++ RGRT+TLKLK F++
Sbjct: 273 ANRIRKSVGGERTFSVDRHEAEELRTTLDEIVDIVWERIERAQARGRTVTLKLKYNDFQL 332
Query: 398 RTRAVTLQKYISSSEDI--LKHASVLLKAELPVSLRLIGLRVTQFNED 443
TRA +L + ++ + + HA + LP +RL+GL ++ D
Sbjct: 333 MTRARSLPRNVADKAEFAAIGHAILDELLPLPRPIRLMGLTLSNLERD 380
>gi|374312136|ref|YP_005058566.1| DNA-directed DNA polymerase [Granulicella mallensis MP5ACTX8]
gi|358754146|gb|AEU37536.1| DNA-directed DNA polymerase [Granulicella mallensis MP5ACTX8]
Length = 382
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 141/356 (39%), Positives = 204/356 (57%), Gaps = 22/356 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +P+L+GKP+ V G S++C A+YEARRFGVR+AMP A
Sbjct: 22 RKIVHVDMDAFYASVEQRDDPTLRGKPVVVAWRGNRSVVCAASYEARRFGVRSAMPAITA 81
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCPE IF+P DFT+Y S R++F ++ SLDEAYLD+T V + + +
Sbjct: 82 ERLCPEAIFLPPDFTRYKAVSRAVREIFQRHTDLIEPLSLDEAYLDVT-VNKNGLPTATK 140
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
+A +R + EE LT SAGVAPN+ LAK+ SD KPNG FV+ P D + TF+ LP+
Sbjct: 141 VASAIRQQIREELSLTASAGVAPNKFLAKIASDWRKPNGLFVIQPGD---LDTFLPPLPV 197
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+I G+GKVTE L V GI T ++ + + L A F + G+
Sbjct: 198 GRIPGVGKVTETRLNQV-GIQTVGDLRNFELATLEAQFGRYGLRLH-ELARGIDHNPVVP 255
Query: 340 ARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R KSIS+E TF ++E + L+ R +AE + ++E RT+ LKLKT+ F
Sbjct: 256 DRPTKSISAEDTFQRDIPLSETEELIRR----LAEKVWTASRRESRMARTVVLKLKTSEF 311
Query: 396 EVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVS--LRLIGLRVTQFNEDKVRAP 448
+ TR+ T +S E++ A S+ + +L + RL+G+ ++ F E + P
Sbjct: 312 NILTRSHTPLVPPASCEELTTIALSLRERIDLAATQRFRLVGVGLSNFREQESPPP 367
>gi|402871881|ref|XP_003899876.1| PREDICTED: DNA polymerase kappa isoform 2 [Papio anubis]
Length = 780
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +
Sbjct: 315 TYLTRDGERKSMSVERTFSEINKAEEQYSLCEELCSELARDLQKEGLKGRTVTIKLKNVN 374
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 449 SDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ +G+ + G
Sbjct: 435 Q---QRSIIGFLQAGNQALSATG 454
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/121 (61%), Positives = 95/121 (78%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRA 154
+ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR+FGVRA
Sbjct: 1 MELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPVAVGSMSMLSTSNYHARKFGVRA 60
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ E
Sbjct: 61 AMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEE 120
Query: 215 R 215
R
Sbjct: 121 R 121
>gi|338740349|ref|YP_004677311.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
gi|337760912|emb|CCB66745.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
Length = 361
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 138/349 (39%), Positives = 203/349 (58%), Gaps = 18/349 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+GKP+AVG ++ A+YEAR FGVR+AM A
Sbjct: 7 RKIIHVDMDAFYASVEQRDNPDLRGKPVAVGHGAKRGVVAAASYEARAFGVRSAMASTTA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
+ CP+LIFVP F Y S R++F +Y P F SLDEAYLD+TE RG+ +
Sbjct: 67 LRQCPDLIFVPPRFEVYRAISRQIREIFAEYTPLFEPLSLDEAYLDVTENL--RGLPTAA 124
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+ A E+R+ ++ E GLT SAGV+ N+ LAK+ SD++KPNGQFV+P R A FI +L +
Sbjct: 125 DTATEIRSRIFSETGLTASAGVSYNKFLAKLASDMHKPNGQFVIPPQRGA--EFIEALAV 182
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+K G+G VT L + GI T ++ Q L F S ++ ++ G
Sbjct: 183 KKFHGVGPVTAEKL-NTLGIYTGADLRAQSLEFLQQHFGKS-GGWYYAIARGEDDRPVEP 240
Query: 340 ARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS SE TF ED+ L + + E+A+ + +K G T+T+K+K F+
Sbjct: 241 NRPRKSSGSETTFP--EDRFLPAEIEEGVLEMADDVWVWCEKNRSFGATVTVKIKYTDFQ 298
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNED 443
+ TR+ T+ I++ + + + L+++ PVS +RL+G+ V++F D
Sbjct: 299 IITRSRTVTAPIATHDRLRDISLSLVRSVYPVSKGIRLVGVAVSKFVSD 347
>gi|422320499|ref|ZP_16401558.1| DNA polymerase IV [Achromobacter xylosoxidans C54]
gi|317404723|gb|EFV85111.1| DNA polymerase IV [Achromobacter xylosoxidans C54]
Length = 360
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 128/350 (36%), Positives = 198/350 (56%), Gaps = 12/350 (3%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPG 158
D SR +H+DMDAFYA+VE NP L+GKP+ V G S++C A+YEARRFGV +AM
Sbjct: 3 DASRKIVHIDMDAFYASVEQRDNPELRGKPVVVAWTGPRSVVCAASYEARRFGVHSAMSA 62
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI- 217
A++LCP+ ++VP DF +Y S R++F ++ SLDEAYLD+T + G+
Sbjct: 63 VRAQRLCPQAVYVPPDFNRYREVSRQIRQIFGRHTDLIEPLSLDEAYLDVT--VNKLGLP 120
Query: 218 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
S E+A+ +R + E GLT SAGVAPN+ LAK+ SD NKP+GQ+V+ R V+ F+
Sbjct: 121 SATEVAQVIRQQIRAETGLTASAGVAPNKFLAKIASDWNKPDGQYVIRPSR--VLEFLQP 178
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+RK+ G+GKV + L + GI+T ++ + + + G+
Sbjct: 179 LPVRKVPGVGKVMQARL-EQLGIHTVGDLATHAAQELEHYFGRYGRRLYELARGIDDREV 237
Query: 338 PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+ + +S+E TFS + L +A+ + + K+G GRT+ LKLKT F +
Sbjct: 238 QTDQPLQQVSAETTFSEDVRLEAVGEALDRMADKVWSQALKKGALGRTVVLKLKTDRFRI 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNEDK 444
TR+ T +S+ ++ A +L + +LP RL G+ ++ F + +
Sbjct: 298 LTRSQTNPNPPASAAELATMARLLCERVDLPAQTLYRLAGVGMSNFADPQ 347
>gi|213963495|ref|ZP_03391749.1| DNA polymerase IV [Capnocytophaga sputigena Capno]
gi|213953903|gb|EEB65231.1| DNA polymerase IV [Capnocytophaga sputigena Capno]
Length = 356
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 199/337 (59%), Gaps = 9/337 (2%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVGTMSMI---CTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE L P L+GK +AVG + TA+YEAR+FGVR+A+ G AR+LCP L
Sbjct: 1 MDAFYASVEQLDFPELRGKAIAVGGGEVRGVVATASYEARKFGVRSAISGAQARRLCPHL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFV F +Y S R +F +Y SLDEAYLD+T V ++ S IA+E+R
Sbjct: 61 IFVKPRFERYKQISMQIRAIFDEYTDLVEPLSLDEAYLDVT-VNKKGNPSATLIAQEIRQ 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
++ E GLT SAG++ N+ +AK+ SD +KPNGQ + + V F+ L +RK GIGK
Sbjct: 120 RIFNEIGLTASAGISVNKFIAKIASDYHKPNGQTTI--TQAEVQDFLDKLDVRKFYGIGK 177
Query: 289 VTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISS 348
VT + + GI +++ +K ++ ++ + G+ + R RKS+ +
Sbjct: 178 VTAEKMYQL-GIFKGKDLREKSLAFLERNFGNSGHYYYELSRGIHRSEVQPFRIRKSVGA 236
Query: 349 ERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKY 407
E TF+ + + R+L IAE + ++K+ + G+T+TLK+K + F ++TR+ TL+ +
Sbjct: 237 EETFAENLTSEVYMERELERIAEDVVRRLEKQQVAGKTITLKIKYSDFTIQTRSKTLKDF 296
Query: 408 ISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 443
ISS E+IL H LL E L S+RL+G+ V+ N +
Sbjct: 297 ISSKEEILLHIKELLYQERLSESVRLLGISVSHLNNE 333
>gi|423016898|ref|ZP_17007619.1| DNA polymerase IV [Achromobacter xylosoxidans AXX-A]
gi|338780129|gb|EGP44547.1| DNA polymerase IV [Achromobacter xylosoxidans AXX-A]
Length = 360
Score = 214 bits (546), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 180/308 (58%), Gaps = 13/308 (4%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPG 158
D SR +H+DMDAFYA+VE NP L+G+P+ V G S++C A+YEARRFGV +AM
Sbjct: 3 DASRKIVHIDMDAFYASVEQRDNPDLRGQPVVVAWTGPRSVVCAASYEARRFGVHSAMSA 62
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI- 217
A++LCP+ ++VP DF +Y S R++F ++ SLDEAYLD+T + G+
Sbjct: 63 VRAQRLCPQAVYVPPDFNRYREVSRQIRQIFARHTDLIEPLSLDEAYLDVT--VNKLGLP 120
Query: 218 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
S E+A+ +R + E GLT SAGVAPN+ LAK+ SD NKP+GQFV+ R V+ F+
Sbjct: 121 SATEVAQVIRQQIRAETGLTASAGVAPNKFLAKIASDWNKPDGQFVIRPTR--VLEFLQP 178
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+RK+ G+GKVT+ L + GI T ++ G + + G+
Sbjct: 179 LPVRKVPGVGKVTQARL-EQLGIQTVGDLATHGVQELEHYFGRYGRRLYELARGIDEREV 237
Query: 338 PQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + +S+E TFS ED L + + +AE + + K+G GRT+ LKLKT F
Sbjct: 238 QTDQPLQQVSAETTFS--EDVRLEAIGEAIDRMAEKVWSQALKKGALGRTVVLKLKTDRF 295
Query: 396 EVRTRAVT 403
+ TR+ T
Sbjct: 296 RILTRSQT 303
>gi|20806775|ref|NP_621946.1| DNA polymerase IV [Thermoanaerobacter tengcongensis MB4]
gi|254478433|ref|ZP_05091810.1| ImpB/MucB/SamB family protein [Carboxydibrachium pacificum DSM
12653]
gi|22095608|sp|P58965.1|DPO4_THETN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|20515235|gb|AAM23550.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Thermoanaerobacter tengcongensis MB4]
gi|214035604|gb|EEB76301.1| ImpB/MucB/SamB family protein [Carboxydibrachium pacificum DSM
12653]
Length = 384
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A++E NP +GKP+ VG +S ++ T +YEAR++G+ +AMP +
Sbjct: 1 MKRKIIHVDMDAFFASIEQQDNPEYRGKPVIVGGLSGRGVVSTCSYEARKYGIHSAMPMY 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+A+KLCP+ IF+P +Y S+ ++ P S+DEAYLD+T V + +
Sbjct: 61 MAKKLCPQGIFLPVRRKRYEEVSEQIFRILYDITPFVEPVSIDEAYLDVTHVDK----NP 116
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
+IA E++ V + GLT S G++ N+ LAK+ SD NKP+G V+ D V + LP
Sbjct: 117 EDIALEIKKRVKDATGLTVSVGISYNKFLAKLASDWNKPDGLMVITED--MVPEILKPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
+ K+ GIG+ + LR + GI T E++L+ L +F + + + + G+
Sbjct: 175 VTKVHGIGEKSAEKLRSI-GIETVEDLLKLPQENLIELFGKTGVEIYNRIR-GIDERPVE 232
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R KSI E+T T++K LL + L E +E++S ++ KE L RT+T+K+KTA F V
Sbjct: 233 TMREIKSIGKEKTLEKDTKNKELLIQHLKEFSEIVSEELIKERLYCRTVTVKIKTADFAV 292
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFN 441
T++ T+ KYI SEDI + A +L + +L +RLIGL V+ +
Sbjct: 293 HTKSKTVDKYIRFSEDIYEVAKGILEEWKLEQYVRLIGLSVSNLS 337
>gi|397478338|ref|XP_003810505.1| PREDICTED: DNA polymerase kappa isoform 3 [Pan paniscus]
Length = 781
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 446
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 434
Query: 447 APSDPTQKTLTNFMTSGHAS 466
Q+++ F+ +G+ +
Sbjct: 435 Q-----QRSIIGFLQAGNQA 449
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 95/121 (78%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRA 154
+ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY ARRFGVRA
Sbjct: 1 MELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRA 60
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ E
Sbjct: 61 AMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEE 120
Query: 215 R 215
R
Sbjct: 121 R 121
>gi|348544851|ref|XP_003459894.1| PREDICTED: DNA polymerase kappa-like [Oreochromis niloticus]
Length = 875
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/187 (52%), Positives = 133/187 (71%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+D++K+ K++ E SKGSK++ENE +++ + Q+I M + A++T + Q
Sbjct: 23 KAGMEGLDRDKINKIIMETSKGSKFYENELKRDQQVNQRITKMMLQKARITEQQLKKAQA 82
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+K LE +RDLSR +HVDMDAFYAAVE P LK KPMAVG+MSM+ T+NY AR
Sbjct: 83 QVEKVATALEKSRDLSRVIVHVDMDAFYAAVEMRDCPELKDKPMAVGSMSMLSTSNYHAR 142
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
++GVRAAMPGFIA+KLCP L+ VP +F KY S+ R++F YDPNF SLDEAYLD
Sbjct: 143 KYGVRAAMPGFIAKKLCPSLVIVPLNFDKYRAVSNEIREIFADYDPNFQPLSLDEAYLDF 202
Query: 209 TEVCRER 215
T+ +R
Sbjct: 203 TDHLEQR 209
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 121/259 (46%), Positives = 170/259 (65%), Gaps = 20/259 (7%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ LP+ R AVM FI
Sbjct: 278 GTSVEEAVREMRFRIEQKTMLTASAGIAPNMMLAKVCSDKNKPNGQYRLPSTREAVMDFI 337
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
+LP+RK+ GIGKV+E +L + GI+TC + Q+ +LL +FS + FL V LGLGST
Sbjct: 338 HNLPVRKVCGIGKVSEKML-NALGISTCSHLGQQMALLSLLFSETAWHHFLEVSLGLGST 396
Query: 336 NTPQARFRKSISSERTF---SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
P+ RKS+S+ERTF S E++ L R E+ E L+ DM+KEGL+G+T+TLKLK
Sbjct: 397 YIPRHEERKSMSTERTFKELSKVEEQLSLCR---ELCEDLAEDMKKEGLKGKTVTLKLKN 453
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFN--EDK 444
+FEV+TRA+TL +++ ++I A LLK E+ P+ LRL+G+R++ F +DK
Sbjct: 454 VNFEVKTRAMTLPCAVATVDEIFAVAKDLLKTEIENESPQPLRLRLMGVRISAFASLDDK 513
Query: 445 VRAPSDPTQKTLTNFMTSG 463
P QK++ F+ SG
Sbjct: 514 -----KPLQKSIIGFLQSG 527
>gi|410039233|ref|XP_003950572.1| PREDICTED: DNA polymerase kappa [Pan troglodytes]
Length = 781
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 169/260 (65%), Gaps = 16/260 (6%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 446
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ED+ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKR 434
Query: 447 APSDPTQKTLTNFMTSGHAS 466
Q+++ F+ +G+ +
Sbjct: 435 Q-----QRSIIGFLQAGNQA 449
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 95/121 (78%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRA 154
+ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY ARRFGVRA
Sbjct: 1 MELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRA 60
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ E
Sbjct: 61 AMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEE 120
Query: 215 R 215
R
Sbjct: 121 R 121
>gi|296117372|ref|ZP_06835962.1| DNA-directed DNA polymerase [Gluconacetobacter hansenii ATCC 23769]
gi|295976138|gb|EFG82926.1| DNA-directed DNA polymerase [Gluconacetobacter hansenii ATCC 23769]
Length = 397
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/342 (37%), Positives = 192/342 (56%), Gaps = 10/342 (2%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP+L+G+P+AVG ++ A+YEARRFGVR+AMP IA
Sbjct: 23 RRIIHVDMDAFYASVEQRDNPALRGRPVAVGGDRLRGVVAAASYEARRFGVRSAMPSVIA 82
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
R+ CPEL+FVP F Y S ++F +Y P SLDEAYLD+T RG S E
Sbjct: 83 RRKCPELVFVPPRFDVYRAVSARIHQIFARYTPLIQPLSLDEAYLDVTHPLLPRG-SATE 141
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA E+R ++ E GL SAGV+ N+ LAK+ SD KP+G +V+ A F++ LP+
Sbjct: 142 IAREIRATIRAETGLCASAGVSYNKFLAKLASDHRKPDGLYVITPRHGA--EFVADLPVE 199
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
+ GIG T + GI+T ++ + A A F+ V G+ R
Sbjct: 200 RFHGIGPATAARM-HALGIHTGRDLRARTLEDLARHFGKVAAFYHGVARGVDHRPVESDR 258
Query: 342 FRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
RKS+ +ERTF + + + + ++ + + ++ L GRT+T+K+K F R
Sbjct: 259 PRKSLGTERTFEHDLYEWSDMAAPMTDMCQRVWHGCERRDLTGRTVTIKIKYNDFRQIVR 318
Query: 401 AVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
A TL + +++++++ HA LL+ P +RL+G+ V+
Sbjct: 319 ASTLMQPVATAQELSAHALGLLRGCFPPERGVRLLGVVVSTL 360
>gi|225023349|ref|ZP_03712541.1| hypothetical protein EIKCOROL_00207 [Eikenella corrodens ATCC
23834]
gi|224943827|gb|EEG25036.1| hypothetical protein EIKCOROL_00207 [Eikenella corrodens ATCC
23834]
Length = 361
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 135/348 (38%), Positives = 193/348 (55%), Gaps = 22/348 (6%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
+R +H+DMDAFYA+VE L+GKP+ V G S++C A+YEARRFG+ +AMP
Sbjct: 4 ARKIIHIDMDAFYASVELREQLHLRGKPLVVAWEGGRSVVCAASYEARRFGLHSAMPAAT 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
AR+LCP+ +FVP F Y S VF ++ SLDEAYLD+T ++
Sbjct: 64 ARRLCPQAVFVPPRFHLYREVSQQIHAVFRQHTDLVEPLSLDEAYLDVTH-NKQNLPYAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
EIA +R + + GLT SAG+APN+ LAK+ SD KPNGQFV+P R+A F+ +LP+
Sbjct: 123 EIAAAIRAEILRQTGLTASAGIAPNKFLAKIASDWRKPNGQFVIPPPRIA--QFLLTLPL 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSL--LCAVFSHSTADFFLSVGLGLGSTN 336
KI G+GK T + G+ T ++ +Q+G L L + + D L G N
Sbjct: 181 GKIPGVGKKTLQKMH-ALGLQTAGDLQKMQRGELVNLFGRWGYRLYD------LARGIDN 233
Query: 337 TP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
P R R IS+E T + + R LA++A+ L A Q++ ++ TLTLKLKTA
Sbjct: 234 RPVQPQRERLQISTEITLPQDLPLSKIVRHLADLAKDLWAQAQRKQVQAHTLTLKLKTAD 293
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 440
F + TR+ T + + L+ A+ L +P RLIGL ++
Sbjct: 294 FHILTRSQTYSSVLPDAAA-LEQAARQLAQRMPAGRDYRLIGLGISHL 340
>gi|441658787|ref|XP_004091292.1| PREDICTED: DNA polymerase kappa isoform 2 [Nomascus leucogenys]
Length = 780
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAEEVVKEIRFRIEQKTALTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 449 SDPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ +G+ + G
Sbjct: 435 Q---QRSIIGFLHAGNQALSATG 454
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 95/121 (78%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRA 154
+ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY ARRFGVRA
Sbjct: 1 MELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRA 60
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ E
Sbjct: 61 AMPGFIAKRLCPQLIIVPPNFDKYQAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEE 120
Query: 215 R 215
R
Sbjct: 121 R 121
>gi|62088162|dbj|BAD92528.1| polymerase (DNA directed) kappa variant [Homo sapiens]
Length = 790
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 207 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 265
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 266 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 324
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 325 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 384
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 385 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 444
Query: 449 SDPTQKTLTNFMTSGHAS 466
Q+++ F+ +G+ +
Sbjct: 445 Q---QRSIIGFLQAGNQA 459
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 98/129 (75%)
Query: 87 QKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYE 146
Q D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY
Sbjct: 3 QLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYH 62
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL
Sbjct: 63 ARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYL 122
Query: 207 DITEVCRER 215
+IT+ ER
Sbjct: 123 NITKHLEER 131
>gi|424877132|ref|ZP_18300791.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
gi|393164735|gb|EJC64788.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
Length = 375
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 197/352 (55%), Gaps = 13/352 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L GKP+AVG ++ A+YEAR FGV +AMP A
Sbjct: 23 RKIIHVDMDAFYASVEQRDNPELGGKPLAVGGSAARGVVAAASYEARVFGVHSAMPSVTA 82
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFVP F Y S R++F +Y P SLDEAYLD+TE + ++ E
Sbjct: 83 KRKCPDLIFVPPRFDVYKAVSQQIREIFAEYTPLIEPLSLDEAYLDVTENLKGMEVA-TE 141
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + E GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + F+ +LP+
Sbjct: 142 IALEIRAKIKEVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPG---FVEALPV 198
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T ++ GI T ++ K + +F + G+
Sbjct: 199 KKFHGVGPATAERMKR-HGIETGLDLKSKSLAFLQQNFGKSGPYFYGIARGVDERRVRPD 257
Query: 341 RFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TF +D L +L +AE + + + G+T+T+K+K + F T
Sbjct: 258 RIRKSVGAEDTFVEDIDDLDLAKAELRPLAEKVWRYCEAHDITGKTVTVKIKYSDFSQAT 317
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN-EDKVRAP 448
R+ T+ +S + +L++A LL + P S+RL+G+ ++ N E+ +AP
Sbjct: 318 RSRTMAGSVSDVDMVLENAETLLASVFPFKRSVRLLGITLSSLNTEESEQAP 369
>gi|56160426|gb|AAV80827.1| polymerase kappa isoform 1 [Homo sapiens]
Length = 780
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 449 SDPTQKTLTNFMTSGHAS 466
Q+++ F+ +G+ +
Sbjct: 435 Q---QRSIIGFLQAGNQA 449
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 95/121 (78%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRA 154
+ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY ARRFGVRA
Sbjct: 1 MELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRA 60
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ E
Sbjct: 61 AMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEE 120
Query: 215 R 215
R
Sbjct: 121 R 121
>gi|294669256|ref|ZP_06734336.1| DNA-directed DNA polymerase [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291308888|gb|EFE50131.1| DNA-directed DNA polymerase [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 354
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 136/350 (38%), Positives = 189/350 (54%), Gaps = 26/350 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P L+G P+ V G S+IC A+YEARRFG+ +AM A
Sbjct: 4 RKIIHIDMDAFYASVELREQPHLQGLPVVVAWEGARSVICAASYEARRFGLHSAMSAATA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+ +FVP +F+ Y S +F ++ SLDEAYLD+T + + +
Sbjct: 64 KRLCPQAVFVPPNFSLYRSVSRQIHGIFRRHTDLVEPLSLDEAYLDVT-LNHQNIPYASD 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA +R + E GLT SAGVAPN+ LAK+ SD NKPNGQFVLP + V F++ LP+
Sbjct: 123 IARSIRADILAETGLTASAGVAPNKFLAKIASDWNKPNGQFVLPPQK--VEAFLTGLPLG 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVG-----LGLGSTN 336
KI G+GKVT ++ + G+NT ++ + A+ F G L G N
Sbjct: 181 KIPGVGKVTRQKMQRL-GMNTVGDLRRHS-------PGELANLFGKWGYRLHDLAYGIDN 232
Query: 337 TP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
P R R IS+E T AL+ R L +A+ L +Q R +TLKLKTA
Sbjct: 233 RPVKAERERLQISTEITLPEDLPLALIVRHLPHLADDLWQQLQNRKTEARGVTLKLKTAD 292
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELP----VSLRLIGLRVTQF 440
F + TR++T + S +L A+ L +P + RLIGL V
Sbjct: 293 FRIITRSLTYSSPLPDSAALLS-AARELAGRIPHASDIDYRLIGLGVGHL 341
>gi|58039310|ref|YP_191274.1| DNA polymerase IV [Gluconobacter oxydans 621H]
gi|81557124|sp|Q5FSM8.1|DPO4_GLUOX RecName: Full=DNA polymerase IV; Short=Pol IV
gi|58001724|gb|AAW60618.1| DNA polymerase IV, damage-inducible protein P [Gluconobacter
oxydans 621H]
Length = 356
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 130/344 (37%), Positives = 192/344 (55%), Gaps = 12/344 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+V+ +PSL+G+P+AVG ++ A+YEARRFGVR+AMP A
Sbjct: 4 RRIVHIDMDAFYASVKQRDDPSLRGRPLAVGRGEARGVVAAASYEARRFGVRSAMPSVTA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCPEL+FVP F Y S +F +Y P SLDEAYLD+T+ G S
Sbjct: 64 KRLCPELLFVPARFDVYRSVSAQIHDIFSRYTPLIQPLSLDEAYLDLTDHLGAYG-SATL 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A+ +R ++ E GLT SAGV+ NR LAK+ SD KP+G FV+ M F+++LP+
Sbjct: 123 VADRIRADIHAETGLTASAGVSYNRFLAKLASDYRKPDGLFVI-TPAMGP-EFVAALPVD 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
GIG +R GI T ++ ++ A F+ + G+ R
Sbjct: 181 AFHGIGPAMARKMR-ALGIETGADLRERDIETLTRHFGKAATFYYGISRGIDHRPVVVNR 239
Query: 342 FRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
RKS+ +E+T+ +T + A ++ L +IA L Q+ L+ RT+TLK+K A F T
Sbjct: 240 ERKSLGTEQTYLRDLTSE-ADAHQALTQIAATLWGSAQRRQLQARTVTLKVKYADFRQIT 298
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
RA TL + S E +L+ L+ P +RL+GL ++ F+
Sbjct: 299 RARTLSAPVPSEEVLLETGQSLMAPLFPFVPGVRLLGLTLSGFH 342
>gi|430744026|ref|YP_007203155.1| nucleotidyltransferase/DNA polymerase [Singulisphaera acidiphila
DSM 18658]
gi|430015746|gb|AGA27460.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Singulisphaera acidiphila DSM 18658]
Length = 361
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 139/351 (39%), Positives = 197/351 (56%), Gaps = 22/351 (6%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPG 158
D R +HVDMDAFYA+VE NP L+G+P+AVG ++ A+YEARRFGVR+AMP
Sbjct: 5 DRQRKIIHVDMDAFYASVEQRDNPELRGRPVAVGGSRERGVVAAASYEARRFGVRSAMPS 64
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI- 217
IA++ CPELIFV F Y S R +F +Y P SLDEAYLD+TE +GI
Sbjct: 65 VIAKRKCPELIFVKPRFDVYRAVSQQIRTIFAEYTPLIEPLSLDEAYLDVTE--NRKGIF 122
Query: 218 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
S E+AEE+R + E GLT SAGV+ N+ LAK+ SD KP+G FV+ + + F+ +
Sbjct: 123 SATEVAEEIRAKIRAETGLTASAGVSYNKFLAKMASDERKPDGLFVITPKKGS--AFVEN 180
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
LP+ K GIG VT + + GI+ ++ Q S L F + ++ S+ G+
Sbjct: 181 LPVGKFHGIGPVTRSKM-EALGIHNGGDLRSQTLSFLQKHFRKA-GPYYFSLARGIDERP 238
Query: 337 TPQARFRKSISSERT-----FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
R RKSI +E T F+V E +A L + ++ +RGRT+TLK K
Sbjct: 239 VCADRVRKSIGAETTFNTDLFTVEEARAALEPLIGKVWSYCEGTT----IRGRTVTLKAK 294
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 440
A F+ TR T+ ++S + + S LL+ PVS +RL+G+ ++
Sbjct: 295 YADFQQITRNRTVDVPVTSRAVLEEVVSALLERLFPVSKGIRLLGVALSSL 345
>gi|300022279|ref|YP_003754890.1| DNA-directed DNA polymerase [Hyphomicrobium denitrificans ATCC
51888]
gi|299524100|gb|ADJ22569.1| DNA-directed DNA polymerase [Hyphomicrobium denitrificans ATCC
51888]
Length = 360
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 138/350 (39%), Positives = 202/350 (57%), Gaps = 18/350 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFI 160
+R +HVDMDAFYA+VE NP L+GK +AVG + ++ A+YEAR FGVR+AMP
Sbjct: 6 TRKIIHVDMDAFYASVEQRDNPELRGKALAVGYGAKRGVVAAASYEARAFGVRSAMPSTT 65
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 219
A + CPELIFV F Y S R +F +Y SLDEAYLD+T RG+ +
Sbjct: 66 AIRQCPELIFVQPRFDAYRAVSQQIRAIFARYTDVIEPLSLDEAYLDVT--ANPRGLPTA 123
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
+ A E+R + E GLT SAGV+ N+ LAK+ SD+ KPNGQ+V+P R A FI++LP
Sbjct: 124 SDTATEIRACILSETGLTASAGVSYNKFLAKLASDMRKPNGQYVIPPQRGA--EFIATLP 181
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
++K GIG VT + + GI T ++ Q L F S A ++ ++ G
Sbjct: 182 VKKFHGIGPVTAAKM-NALGIQTGADLRSQSIEFLQRQFGKSGA-WYYAIARGEDDRPVE 239
Query: 339 QARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKS SE TFS ED+ + + + E+A+ + A +K G T T+K+K A F
Sbjct: 240 PNRPRKSSGSETTFS--EDRVIPAEIEAGVLEMADDVWAWCEKNQSFGATATVKIKYADF 297
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNED 443
+ TR+ T + I+S E + + + L+++ PV+ +RL+G+ V+ F+ +
Sbjct: 298 RIVTRSRTASRPITSRELLHETSLALVRSIYPVAIGIRLVGVSVSNFSSN 347
>gi|426384400|ref|XP_004058757.1| PREDICTED: DNA polymerase kappa isoform 2 [Gorilla gorilla gorilla]
Length = 781
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 197 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 255
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 256 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 314
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 315 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 374
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 375 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 434
Query: 449 SDPTQKTLTNFMTSGHAS 466
Q+++ F+ +G+ +
Sbjct: 435 Q---QRSIIGFLQAGNQA 449
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 77/121 (63%), Positives = 95/121 (78%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRA 154
+ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY ARRFGVRA
Sbjct: 1 MELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRA 60
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AMPGFIAR+LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+IT+ E
Sbjct: 61 AMPGFIARRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEE 120
Query: 215 R 215
R
Sbjct: 121 R 121
>gi|291413624|ref|XP_002723070.1| PREDICTED: DNA-directed DNA polymerase kappa, partial [Oryctolagus
cuniculus]
Length = 774
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/258 (46%), Positives = 168/258 (65%), Gaps = 16/258 (6%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ+ V+PN R AVM F
Sbjct: 198 GTSAEEVVKEIRFRIKQKTTLTASAGIAPNTMLAKICSDKNKPNGQYQVIPN-RQAVMNF 256
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ G+ TC E+ Q+ +LL +FS ++ +FL V LGLGS
Sbjct: 257 IKDLPIRKVSGIGKVTEKMLK-ALGVVTCTELYQQRALLSLLFSETSWHYFLHVSLGLGS 315
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK
Sbjct: 316 THLARDGERKSMSIERTFSELSKAEEQYSLCQELCRDLAQDLQKEGLKGRTVTVKLKNVD 375
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQF--NEDKVR 446
FEV+TRA T+ +S+SE+I A LL+ E+ P+ LRL+G+RV+ F EDK +
Sbjct: 376 FEVKTRASTVPCLVSTSEEIFAVAKELLRTEIDADFPHPLRLRLMGVRVSGFPNEEDKKQ 435
Query: 447 APSDPTQKTLTNFMTSGH 464
QK++ F+ +G+
Sbjct: 436 -----QQKSIVGFLQTGN 448
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/125 (61%), Positives = 97/125 (77%)
Query: 91 DKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRF 150
D+ +ELE +R+LS + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY ARRF
Sbjct: 2 DRFAMELEKSRNLSNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRF 61
Query: 151 GVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE 210
GVRAAMPGFIA++LCP+LI VP +F KY S +++ YDP+FMA SLDEAYL+IT+
Sbjct: 62 GVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSQEVKEILADYDPDFMAMSLDEAYLNITK 121
Query: 211 VCRER 215
ER
Sbjct: 122 HLEER 126
>gi|261381373|ref|ZP_05985946.1| DNA-directed DNA polymerase [Neisseria subflava NJ9703]
gi|284795651|gb|EFC50998.1| DNA-directed DNA polymerase [Neisseria subflava NJ9703]
Length = 352
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 131/344 (38%), Positives = 192/344 (55%), Gaps = 14/344 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LKG P+ V GT S+IC A+YEAR+FG+ +AM A
Sbjct: 4 RKIIHIDMDAFYASVELHEQPHLKGLPVVVAWDGTRSVICAASYEARKFGLHSAMSVATA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+ +FV F Y S VF +Y SLDEAYLD+T+ E E
Sbjct: 64 KRLCPQAVFVQPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTQNF-ENIPYASE 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A+ +R ++EE GLT SAG+APN+ LAK+ SD KPNGQFVLP + +M F+ SLP+
Sbjct: 123 VAKRIRAEIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQK--IMAFLESLPLG 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G+GKVT + + G+ T ++ ++G LL + + L+ G+ +
Sbjct: 181 KIPGVGKVTLKKM-NALGMQTAGDLRRFERGELLNHFGRYGYRLYDLARGIDERPVKAER 239
Query: 340 ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R + IS+E T A L +AE L ++++ + + +TLKLKT F + T
Sbjct: 240 ERLQ--ISTEITLPEDLSLAQASSHLPHLAEDLWRQIERKNVEAKGVTLKLKTHDFRIIT 297
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 440
R++T + S +L+ A LL+ P + RLIG+ V+
Sbjct: 298 RSLTYSSVLPDSASLLQAAHTLLQRIPPQREDAFRLIGIGVSHL 341
>gi|402831592|ref|ZP_10880272.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
gi|402281665|gb|EJU30292.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
Length = 366
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 129/344 (37%), Positives = 197/344 (57%), Gaps = 9/344 (2%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGF 159
+ R +H+DMDAF+A+VE +P LKGK +AVG ++ A+YEARR+GVR+AM G
Sbjct: 1 MERKIIHIDMDAFFASVEQHDDPWLKGKAIAVGGEGARGVVAAASYEARRYGVRSAMAGT 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
AR+LCP+LIFV F +Y S R +F +Y SLDEAYLD+T + S
Sbjct: 61 TARQLCPQLIFVKPRFERYREISMQIRTIFYEYTDLVEPLSLDEAYLDVT-TNKMDMPSA 119
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IA+++R ++E+ GLT SAG++ N+ +AK+ SD NKPNGQ +P + V+ F++ L
Sbjct: 120 TLIAQQIRAKIFEQTGLTASAGISINKFIAKIASDYNKPNGQKTVPPEE--VLDFLAQLD 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
I+K GIGKVT + GI T ++ K + + ++F + G+ +
Sbjct: 178 IKKFYGIGKVTAQKMYQK-GIFTGADLRAKTLEELQEYFGNNGEYFYQIARGIHLSPVQP 236
Query: 340 ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R KSI E TF + + L ++ E ++ + K+ L +T+TLKLK + F+ +
Sbjct: 237 FRLVKSIGVEHTFETNISSEIFMEEPLKKLCEEVAQRLAKKQLLAKTVTLKLKYSDFKQQ 296
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 441
TR+ TL ++ S I + S LL E L S+RL+G+ ++ FN
Sbjct: 297 TRSRTLIDFVGDSATIYQVISELLYQERLRESVRLLGVSLSHFN 340
>gi|21230058|ref|NP_635975.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66769949|ref|YP_244711.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. 8004]
gi|188993162|ref|YP_001905172.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. B100]
gi|24211642|sp|Q8PCW8.1|DPO4_XANCP RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81304097|sp|Q4UQI2.1|DPO4_XANC8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21111581|gb|AAM39899.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66575281|gb|AAY50691.1| DNA polymerase IV [Xanthomonas campestris pv. campestris str. 8004]
gi|167734922|emb|CAP53134.1| DNA polymerase IV [Xanthomonas campestris pv. campestris]
Length = 359
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/353 (39%), Positives = 206/353 (58%), Gaps = 18/353 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP+ +FVP DF +Y S R++F ++ SLDEAYLD+TE + G+
Sbjct: 62 ERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTEA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F+ LP+
Sbjct: 120 EIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAFLLPLPV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELQAHFG-SFGQSLYRRARGIDERPVEP 235
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 236 DQEVQSVSSEDTFS--EDLALDALDPHIQRLAEKTWHATRRTERIGRTVVLKLKTSNFRI 293
Query: 398 RTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFNEDKVRA 447
TR+ T ++ +S + ++ A L + ELP RL+G+ ++ F++ +++A
Sbjct: 294 LTRSYTPEQPPASLQGLVDIALGLTRRVELPPETRYRLVGVGLSGFSDPELQA 346
>gi|384426413|ref|YP_005635770.1| ImpB-MucB-SamB family [Xanthomonas campestris pv. raphani 756C]
gi|341935513|gb|AEL05652.1| ImpB-MucB-SamB family [Xanthomonas campestris pv. raphani 756C]
Length = 359
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/353 (39%), Positives = 206/353 (58%), Gaps = 18/353 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP+ +FVP DF +Y S R++F ++ SLDEAYLD+TE + G+
Sbjct: 62 ERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTEA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F+ LP+
Sbjct: 120 EIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAFLLPLPV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELHAHFG-SFGQSLYRRARGIDERPVEP 235
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 236 DQEVQSVSSEDTFS--EDLALDALDPHIQRLAEKTWHATRRTERIGRTVVLKLKTSNFRI 293
Query: 398 RTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFNEDKVRA 447
TR+ T ++ +S + ++ A L + ELP RL+G+ ++ F++ +++A
Sbjct: 294 LTRSYTPEQPPASLQGLVDIALGLTRRVELPPETRYRLVGVGLSGFSDPELQA 346
>gi|293604743|ref|ZP_06687143.1| DNA-directed DNA polymerase IV [Achromobacter piechaudii ATCC
43553]
gi|292816912|gb|EFF75993.1| DNA-directed DNA polymerase IV [Achromobacter piechaudii ATCC
43553]
Length = 360
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 134/350 (38%), Positives = 198/350 (56%), Gaps = 16/350 (4%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPG 158
+L R +HVDMDAFYA+VE NP L+GKP+ V G S++C A+YEARRFG+ +AM
Sbjct: 3 ELLRKIVHVDMDAFYASVEQRDNPELRGKPVVVAWTGPRSVVCAASYEARRFGIHSAMSA 62
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI- 217
A +LCP+ I+VP DF +Y S R++F ++ SLDEAYLD+T + G+
Sbjct: 63 MRAERLCPDAIYVPPDFNRYREVSRQIRQIFARHTDLIEPLSLDEAYLDVTH--NKGGLP 120
Query: 218 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
S E+A+ +R + EE GLT SAG+APN+ LAK+ SD NKP+GQFV+ + V+ F+
Sbjct: 121 SATEVAQVIRHQIREETGLTASAGIAPNKFLAKIASDWNKPDGQFVIRPTK--VLEFLQP 178
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+RK+ G+GKVT+ L + GI+T ++ A + + G+
Sbjct: 179 LPVRKVPGVGKVTQARL-EQLGIHTVGDLATHSLEELAHYFGRYGRRLYELARGIDEREV 237
Query: 338 PQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + +S+E TFS ED L L + +A + K+G GRT+ LKLKT F
Sbjct: 238 QTDQPLQQVSAETTFS--EDIRLDALGEAIDRMAGKVWDQALKKGALGRTVVLKLKTDRF 295
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFNE 442
+ TR+ T S+ ++ A +L + ELP RL G+ ++ F +
Sbjct: 296 RILTRSQTSLNPPGSAAELAAVARLLCERVELPPETLYRLAGVGMSNFAD 345
>gi|384214582|ref|YP_005605746.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
gi|354953479|dbj|BAL06158.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
Length = 366
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 131/349 (37%), Positives = 199/349 (57%), Gaps = 20/349 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG + ++ A+YEAR+FGVR+AMP A
Sbjct: 15 RKIIHIDMDAFYASVEQRDNPELRGKPVAVGGSAERGVVAAASYEARKFGVRSAMPSVTA 74
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFV F Y S R +F ++ P SLDEAYLD+TE + GI
Sbjct: 75 KRQCPDLIFVRPRFEVYKAISRQIRDIFAEHTPIIEPLSLDEAYLDVTE-----NLQGIP 129
Query: 222 IAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
+A + +R + E GL SAG++ N+ LAK+ SD KPNGQFV+ D F+ +
Sbjct: 130 LARDVALLIREKIKAETGLNASAGISYNKFLAKLASDHRKPNGQFVISPDMGP--AFVET 187
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
LP+ K GIG T + + G+ T ++ Q + A F S A ++ + G+
Sbjct: 188 LPVGKFHGIGPATSAKM-NALGLFTGLDIRNQTLEFMNANFGKSGA-YYYWISRGVDERP 245
Query: 337 TPQARFRKSISSERTFSVTEDK-ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKSI +E TFS D+ L +L + + + + G RGRT+TLK+K A F
Sbjct: 246 VRANRIRKSIGAETTFSTDLDEYGALAAELKPLVDKVWRHCETTGNRGRTVTLKIKFADF 305
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNE 442
E+ TR+ ++ ++ +D+ + A LL+AE+P+ +RL+G+ ++ +
Sbjct: 306 EIITRSRSVTAPVAGRDDLERLACGLLEAEMPLPKRVRLLGVSLSALQD 354
>gi|334318683|ref|YP_004551242.1| DNA-directed DNA polymerase [Sinorhizobium meliloti AK83]
gi|334099110|gb|AEG57119.1| DNA-directed DNA polymerase [Sinorhizobium meliloti AK83]
Length = 378
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 136/355 (38%), Positives = 197/355 (55%), Gaps = 16/355 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEAR+FGV +AMP A
Sbjct: 26 RKIIHIDMDAFYASVEQRDNPELRGKPVAVGYPEARGVVAAASYEARKFGVHSAMPSVTA 85
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CPELIFVP F Y S + +F +Y P SLDEAYLD+TE + ++ E
Sbjct: 86 KRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLIEPLSLDEAYLDVTENLKGLRLA-TE 144
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAEE+RT + E LT SAGV+ N+ LAK+ SD KP+G FV+ R F+ +LP++
Sbjct: 145 IAEEIRTRIKAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKRGP--EFVQALPVK 202
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
K G+G T ++ + GI T ++ + + +F + G+ R
Sbjct: 203 KFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDEREVKPDR 261
Query: 342 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRGRTLTLKLKTASFEVR 398
RKSI +E TF ED L A + ++ + G+RG+T+TLK+K A F
Sbjct: 262 IRKSIGAEDTFR--EDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTLKVKWADFTQI 319
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPSDP 451
TR+ T+ I+S ++ + A +LL PV +RL+G VT + DKV S+P
Sbjct: 320 TRSKTIVAPIASVAEMSEIAELLLSPIFPVPKGIRLLG--VTLSSLDKVDDRSEP 372
>gi|374596002|ref|ZP_09669006.1| DNA polymerase IV [Gillisia limnaea DSM 15749]
gi|373870641|gb|EHQ02639.1| DNA polymerase IV [Gillisia limnaea DSM 15749]
Length = 349
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 128/337 (37%), Positives = 197/337 (58%), Gaps = 13/337 (3%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE L NP L+GK +AVG ++ A+YEAR++GV++AM IA++ CP+L
Sbjct: 1 MDAFYASVEQLDNPELRGKALAVGGSEQRGVVAAASYEARKYGVKSAMSSVIAKRNCPDL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IF+ F +Y S+ R +F +Y SLDEAYLD+TE ++ S IA E+R
Sbjct: 61 IFIKPRFERYREISNQIRAIFLEYTDLVEPLSLDEAYLDVTE-NKKGNPSATLIAREIRE 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPIRKIGGIG 287
+ + GL SAG++ N+ +AK+ SDINKPNGQ + P D V+ F+ L +RK G+G
Sbjct: 120 KIKNKTGLNASAGISVNKFIAKIASDINKPNGQKTINPED---VLEFLEKLQVRKFHGVG 176
Query: 288 KVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSI 346
KVT + + GI ++ QK L F S ++ +V G+ + R RKS+
Sbjct: 177 KVTAEKMYQL-GIFNGFDLKQKSLEFLIENFGKSGLHYY-NVVRGIHLSEVKPNRIRKSL 234
Query: 347 SSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQ 405
+ERTF + + +L IAE + +QK + G+T+TLK+K + F TR+ TL
Sbjct: 235 GAERTFDTNISSEIFMLERLQNIAEEIERRLQKSKVAGKTVTLKIKYSDFTQHTRSKTLP 294
Query: 406 KYISSSEDILKHAS-VLLKAELPVSLRLIGLRVTQFN 441
+ISS + +L+ A +L + ++ S+RL+G+ ++ N
Sbjct: 295 YFISSKDLVLECAKELLFQEKMKESVRLLGISLSNLN 331
>gi|440733826|ref|ZP_20913497.1| DNA polymerase IV [Xanthomonas translucens DAR61454]
gi|440358515|gb|ELP95866.1| DNA polymerase IV [Xanthomonas translucens DAR61454]
Length = 353
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 139/350 (39%), Positives = 200/350 (57%), Gaps = 22/350 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +P+L+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIIHVDMDAFYASVEQRDDPALRGKPVVVAWRGMRSVVCAASYEARVFGIRSAMPALRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+TE E + E
Sbjct: 62 ERLCPDAIFVPPDFARYKAVSRQVREIFQRHTDLIEPLSLDEAYLDVTEPKGELA-TATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA+ +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+ P+ V F++ LP+
Sbjct: 121 IAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQ---VDAFLTPLPV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
K+ G+GKV + L ++ GI T ++ G + S G+
Sbjct: 178 SKVPGVGKVMQAKLAEL-GIVTVGDLRTHGEVELEARFGSFGLRLYQRARGIDQRPVEAD 236
Query: 341 RFRKSISSERTFSVTEDKAL-----LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ +SISSE TF+ ED AL R LAE + +A + E + RT+ LKLKTA F
Sbjct: 237 QQVQSISSEDTFA--EDLALDALEPAIRLLAE--KTWTATRRTERI-ARTVVLKLKTAQF 291
Query: 396 EVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LRLIGLRVTQFNE 442
+ TR+ T ++ S + + A L + +LP S RL+G+ + F+E
Sbjct: 292 RILTRSFTPEQPPDSLQALTDIALALRQRVDLPASTRYRLVGVGLAGFHE 341
>gi|288929132|ref|ZP_06422977.1| DNA polymerase IV [Prevotella sp. oral taxon 317 str. F0108]
gi|288329234|gb|EFC67820.1| DNA polymerase IV [Prevotella sp. oral taxon 317 str. F0108]
Length = 367
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 136/361 (37%), Positives = 198/361 (54%), Gaps = 26/361 (7%)
Query: 100 TRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAM 156
+D +R +H+DMDAFYA+VE +PSL+GKP+ +G+ ++CTA+YEAR++GV +AM
Sbjct: 3 AQDFNRKIIHIDMDAFYASVEQRDDPSLRGKPVGIGSEDRRGVLCTASYEARKYGVHSAM 62
Query: 157 PGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERG 216
G A++LCPELIF+P DF KY S ++F +Y SLDEAYLD+T+ + G
Sbjct: 63 SGVQAKRLCPELIFLPPDFKKYKQVSQQVHEIFHRYTDLVEPLSLDEAYLDVTQ--NKLG 120
Query: 217 IS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
I ++IA+ +R + E LT SAGV+ N+ LAKV SD KP+G V+ R M FI
Sbjct: 121 IELAVDIAQRIRQEIRNELHLTASAGVSFNKFLAKVASDFRKPDGITVIHPSR--AMHFI 178
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
+LPI G+G T + + N + L VF + + + + +
Sbjct: 179 DNLPITDFWGVGHKTAETMHAMGIFNGADLRQLSRLRLRQVFGKA-GEMYYNFARAIDPR 237
Query: 336 NTPQARFRKSISSERTFSVTEDKA-------LLYRKLAEIAEMLSADMQKEGLRGRTLTL 388
RKS+ ERTF ED + LYR + E+ E L +K +GRTLTL
Sbjct: 238 PVEPHWIRKSVGCERTFD--EDSSNPTVLLTELYRLVLELVERL----KKNDFKGRTLTL 291
Query: 389 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRVTQFNEDKV 445
K+K F TR+ T + EDIL A LL +E+ S +RL+G++V+ N++
Sbjct: 292 KVKFHDFTQITRSRTAPHVLRKKEDILPIAKALL-SEVNYSGRPIRLLGVQVSNMNDEPH 350
Query: 446 R 446
R
Sbjct: 351 R 351
>gi|414342328|ref|YP_006983849.1| DNA polymerase IV [Gluconobacter oxydans H24]
gi|411027663|gb|AFW00918.1| DNA polymerase IV [Gluconobacter oxydans H24]
Length = 379
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 140/361 (38%), Positives = 197/361 (54%), Gaps = 14/361 (3%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE NPSL+G+P+AVG ++ A+YEAR FGVR+AMP
Sbjct: 3 SRRIVHIDMDAFYASVEQRDNPSLRGRPLAVGRGEARGVVAAASYEARPFGVRSAMPSLK 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+L+FVP F Y S ++F +Y P SLDEAYLD+T+ G S
Sbjct: 63 AKRLCPDLVFVPARFDVYRTVSAQIHEIFARYTPLIQPLSLDEAYLDLTDYLGAYG-SAT 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+AE +R + +E GLT SAGV+ NR LAK+ SD KP+G FV+ RM F++ L +
Sbjct: 122 LVAESIRADIRKETGLTASAGVSYNRFLAKLASDYRKPDGLFVI-TPRMGP-DFVAGLAV 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP 338
+ GIG T +R GI T + L+K L L F S A F+ + G+
Sbjct: 180 DQFHGIGPATARKMR-ALGIETGAD-LRKLDLPTLTRHFGKS-ALFYHGISRGIDERPVV 236
Query: 339 QARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +E+T+ S +D+ L IA L Q++ + GRT+TLK+K A F
Sbjct: 237 VNRERKSLGTEQTYLSDLKDENAARAALGLIATKLWLQAQRKQITGRTVTLKVKYADFRQ 296
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNEDKVRAPSDPTQKT 455
TRA TL ++S + L P++ +RL+GL ++ P P Q
Sbjct: 297 ITRARTLPASVNSEAVLADVGQSLFTPLFPLTPGVRLLGLTMSSLAGTDDATPDSPPQMQ 356
Query: 456 L 456
L
Sbjct: 357 L 357
>gi|453331644|dbj|GAC86558.1| DNA polymerase IV [Gluconobacter thailandicus NBRC 3255]
Length = 379
Score = 212 bits (539), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 191/343 (55%), Gaps = 10/343 (2%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE NPSL+G+P+AVG ++ A+YEAR FGVR+AMP
Sbjct: 3 SRRIVHIDMDAFYASVEQRDNPSLRGRPLAVGRGEARGVVAAASYEARPFGVRSAMPSLT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+L+FVP F Y S ++F +Y P SLDEAYLD+T+ G S
Sbjct: 63 AKRLCPDLVFVPARFDVYRTVSAQIHEIFARYTPLIQPLSLDEAYLDLTDYLGAYG-SAT 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+AE +RT + +E GLT SAGV+ NR LAK+ SD KP+G FV+ RM F++ L +
Sbjct: 122 LVAESIRTDIRKETGLTASAGVSYNRFLAKLASDYRKPDGLFVI-TPRMGP-DFVAGLAV 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+ GIG T +R GI T ++ + + +A F+ + G+
Sbjct: 180 DQFHGIGPATARKMR-ALGIETGADLRKLDLPTLTRYFGKSALFYHGISRGIDERPVVVN 238
Query: 341 RFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E+T+ S +D+ L IA L Q++ + GRT+TLK+K A F T
Sbjct: 239 RERKSLGTEQTYLSDLKDENAARTALGLIATKLWLQAQRKQITGRTVTLKVKYADFRQIT 298
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 440
RA TL ++S + L P++ +RL+GL ++
Sbjct: 299 RARTLPASVNSEAVLADVGQSLFTPLFPLTPGVRLLGLTMSSL 341
>gi|238588488|ref|XP_002391740.1| hypothetical protein MPER_08787 [Moniliophthora perniciosa FA553]
gi|215456822|gb|EEB92670.1| hypothetical protein MPER_08787 [Moniliophthora perniciosa FA553]
Length = 287
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 113/282 (40%), Positives = 172/282 (60%), Gaps = 32/282 (11%)
Query: 9 ASSSENPRPWQSYHTVY------TNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEA 62
+S+ P+P Q ++ ++ KAG+ D+ ++ +++ E SKGSK +ENE+RK+
Sbjct: 13 SSTHSAPQPSQDSASLLKRLAGPSSGKAGLTN-DQTEINRIIAEASKGSKXYENEKRKDK 71
Query: 63 FIQQKIEH-MRARCAKLT----SPVISHYQKVADKRIL--------------ELEATRDL 103
+ ++I ++ R L V +H ++ + ++ ELE+ RDL
Sbjct: 72 DLTERISRILKERNEVLKDVDLQKVEAHVDRIVREHVIAYSRNPLTSYLKISELESQRDL 131
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARK 163
++ +HVDMDAFYA VE L NP LKGKP VG ++ TA+YEAR+FG+R+ M GFIA+K
Sbjct: 132 TQVIVHVDMDAFYANVELLHNPELKGKPFGVGR-GVLTTASYEARKFGIRSGMAGFIAKK 190
Query: 164 LCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIA 223
LCP++I +P +F++Y+ SD +F +YDP+ A DE YL+IT+ C E I+ +
Sbjct: 191 LCPDIILLPINFSRYSEMSDKVMAIFARYDPDMCPAGCDEGYLNITKYCAEHNITPEDCV 250
Query: 224 EELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 265
E+R V+E+ LT SAG+APN++LAK NKPNGQF LP
Sbjct: 251 NEMRRVVFEDTKLTVSAGIAPNKMLAK-----NKPNGQFGLP 287
>gi|421862800|ref|ZP_16294504.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379710|emb|CBX21699.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 352
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 129/344 (37%), Positives = 194/344 (56%), Gaps = 18/344 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VEAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRV 437
+ TR +T + +L+ A +L K P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCASLLQAAQMLTKRVPPQTEDAFRLIGIGV 338
>gi|16119697|ref|NP_396403.1| DNA polymerase IV [Agrobacterium fabrum str. C58]
gi|22095614|sp|Q8UJK7.2|DPO42_AGRT5 RecName: Full=DNA polymerase IV 2; Short=Pol IV 2
gi|15162281|gb|AAK90844.1| DNA polymerase IV [Agrobacterium fabrum str. C58]
Length = 357
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 192/347 (55%), Gaps = 12/347 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA---NYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+G+P+AVG+ + +YEAR FGVR+AMP A
Sbjct: 2 RKIIHVDMDAFYASVEQRDNPELRGRPVAVGSAAARGVVAAASYEAREFGVRSAMPSVTA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ CP+LIFVP F Y S R +F +Y SLDEAYLD+TE + I+ E
Sbjct: 62 ARRCPDLIFVPPRFDVYKAVSQQIRAIFAEYTRLIEPLSLDEAYLDVTENLKGMEIA-TE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F+ L +
Sbjct: 121 IASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---FVEQLAV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T + FGI T ++ K A + +F + G+
Sbjct: 178 KKFHGVGPATAEKMHR-FGIETGADLKSKSLQFLAEHFGKSGAYFYGIARGIDERQVRPD 236
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TFSV D L +L +AE + + + + G+T+T+K+K + F T
Sbjct: 237 RIRKSVGAEDTFSVDINDLDLATAELRPLAEKVWHHCEAQRVSGKTVTVKVKYSDFTQAT 296
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 444
R+ T ++ ++IL+ AS LL P S+RL+G+ ++ D+
Sbjct: 297 RSRTSALPVNGIQEILEAASALLATVYPFRRSVRLLGVTLSSLTNDQ 343
>gi|319788065|ref|YP_004147540.1| DNA-directed DNA polymerase [Pseudoxanthomonas suwonensis 11-1]
gi|317466577|gb|ADV28309.1| DNA-directed DNA polymerase [Pseudoxanthomonas suwonensis 11-1]
Length = 364
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 134/354 (37%), Positives = 198/354 (55%), Gaps = 30/354 (8%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE PSL+G+P+ V G S++C A+YEAR+FGVR+AMP A
Sbjct: 10 RKIIHVDMDAFYASVEQRDAPSLRGRPVVVAWRGARSVVCAASYEARKFGVRSAMPALRA 69
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+ +FVP DF +Y S R++ ++ SLDEAYLD+T R S
Sbjct: 70 ERLCPDAVFVPPDFVRYKAVSRQVREIMLEHTDLVEPLSLDEAYLDVT-TPRTGLPSATA 128
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
+AE +R + E GLT SAGVAPN+ LAK+ SD NKP+G FV+ P V F++ LP+
Sbjct: 129 VAEAIRAKIRAETGLTASAGVAPNKFLAKIASDWNKPDGLFVIRPQH---VERFLTPLPV 185
Query: 281 RKIGGIGKVTEHILRDVFGINTC--------EEMLQK-GSLLCAVFSHSTADFFLSVGLG 331
+I G+GKV + L + GI T EE+ Q+ GS A++ + G
Sbjct: 186 ERIPGVGKVMQGKLAE-LGIATVGELRSRPLEELQQRFGSFGAALYRRAR---------G 235
Query: 332 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
+ + +S+SSE TF+ L + ++AE ++ G G T+ LKLK
Sbjct: 236 IDERPVEPDQPVRSVSSEDTFAGDLPLEALEPAIRQLAEKTWNASRRAGRDGHTVVLKLK 295
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 442
TA F + TR++TL++ +S+ ++ A L + LP RL+G+ ++ F +
Sbjct: 296 TAQFRILTRSLTLERPPASAAELADLACALRERVSLPAETRYRLVGVGLSGFRD 349
>gi|297543787|ref|YP_003676089.1| DNA-directed DNA polymerase [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296841562|gb|ADH60078.1| DNA-directed DNA polymerase [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 389
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 128/345 (37%), Positives = 198/345 (57%), Gaps = 14/345 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE NP KGKP+ VG +S ++ T +YEAR++G+ +AMP +
Sbjct: 1 MKRKIIHVDMDAFFASVEQHDNPKYKGKPVIVGGLSGRGVVSTCSYEARKYGIHSAMPMY 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+ARKLCP IF+ +Y S + P S+DEAYLD+T++ + +
Sbjct: 61 MARKLCPHGIFLSVRRKRYEEVSKQIFDILYSITPLVEPVSIDEAYLDVTDIDKNPEV-- 118
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IA+E++ V E GLT SAGV+ N+ LAK+ SD NKP+G V+ D + + LP
Sbjct: 119 --IAKEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFTVITEDMIP--DILKPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTP 338
+ K+ GIG+ +E L+ + GINT ++L+ L +F + +L + G+
Sbjct: 175 VSKVYGIGEKSEERLKSM-GINTIGDLLKLSQENLVEIFGKVGVEIYLRIR-GIDERPVE 232
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R KSI E+T T+DK LL ++++S ++ + GL RT+T+K+KT+ F +
Sbjct: 233 TMREIKSIGKEKTLEKDTKDKKLLLHYAKLFSDIISEELFRAGLYARTVTVKIKTSDFAI 292
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFN 441
T++ TL KYI SEDI A ++ +L +RLIGL V+ +
Sbjct: 293 HTKSKTLNKYIRLSEDIYNVAYEIIENIKLDQYIRLIGLSVSNLS 337
>gi|294664551|ref|ZP_06729895.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|292605685|gb|EFF48992.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 359
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 198/347 (57%), Gaps = 16/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T+ + G+
Sbjct: 62 ERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F+ L +
Sbjct: 120 EVAQSIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAFLLPLKV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+I G+GKV + L GI T ++ Q+ S G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDERPVEPD 236
Query: 341 RFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 237 QEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRIL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 442
TR+ T ++ +S E + + A L + ELP RL+G+ ++ F++
Sbjct: 295 TRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLSGFSD 341
>gi|335037525|ref|ZP_08530830.1| DNA polymerase IV [Agrobacterium sp. ATCC 31749]
gi|333790976|gb|EGL62368.1| DNA polymerase IV [Agrobacterium sp. ATCC 31749]
Length = 365
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 192/347 (55%), Gaps = 12/347 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA---NYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+G+P+AVG+ + +YEAR FGVR+AMP A
Sbjct: 10 RKIIHVDMDAFYASVEQRDNPELRGRPVAVGSAAARGVVAAASYEAREFGVRSAMPSVTA 69
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ CP+LIFVP F Y S R +F +Y SLDEAYLD+TE + I+ E
Sbjct: 70 ARRCPDLIFVPPRFDVYKAVSQQIRAIFAEYTRLIEPLSLDEAYLDVTENLKGMEIA-TE 128
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F+ L +
Sbjct: 129 IASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---FVEQLAV 185
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T + FGI T ++ K A + +F + G+
Sbjct: 186 KKFHGVGPATAEKMHR-FGIETGADLKSKSLQFLAEHFGKSGAYFYGIARGIDERQVRPD 244
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TFSV D L +L +AE + + + + G+T+T+K+K + F T
Sbjct: 245 RIRKSVGAEDTFSVDINDLDLATAELRPLAEKVWHHCEAQRVSGKTVTVKVKYSDFTQAT 304
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 444
R+ T ++ ++IL+ AS LL P S+RL+G+ ++ D+
Sbjct: 305 RSRTSALPVNGIQEILEAASALLATVYPFRRSVRLLGVTLSSLTNDQ 351
>gi|167038401|ref|YP_001665979.1| DNA polymerase IV [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|167038865|ref|YP_001661850.1| DNA polymerase IV [Thermoanaerobacter sp. X514]
gi|256751141|ref|ZP_05492023.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus CCSD1]
gi|300913550|ref|ZP_07130867.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
gi|307723435|ref|YP_003903186.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
gi|320116805|ref|YP_004186964.1| DNA-directed DNA polymerase [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166853105|gb|ABY91514.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
gi|166857235|gb|ABY95643.1| DNA-directed DNA polymerase [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256750047|gb|EEU63069.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus CCSD1]
gi|300890235|gb|EFK85380.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
gi|307580496|gb|ADN53895.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
gi|319929896|gb|ADV80581.1| DNA-directed DNA polymerase [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 389
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 130/345 (37%), Positives = 199/345 (57%), Gaps = 14/345 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE NP KGKP+ VG +S ++ T +YEAR++G+ +AMP +
Sbjct: 1 MKRKIIHVDMDAFFASVEQHDNPEYKGKPVIVGGLSGRGVVSTCSYEARKYGIHSAMPMY 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+ARKLCP IF+ +Y S + P S+DEAYLD+T++ + I
Sbjct: 61 MARKLCPHGIFLSVRRKRYEEVSAQIFDILYSITPLVEPVSIDEAYLDVTDIDKNPEI-- 118
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IA E++ V E GLT SAGV+ N+ LAK+ SD NKP+G V+ D + + LP
Sbjct: 119 --IALEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFMVITED--MIPDILKPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTP 338
+ K+ GIG+ +E L+ + GINT ++L+ L +F + +L + G+
Sbjct: 175 VSKVYGIGQKSEERLKSM-GINTIGDLLKLSQENLVEIFGKVGVEIYLRIR-GIDERPVE 232
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R KSI E+T T+DK LL R ++++S ++ +E L RT+T+K+KT+ F V
Sbjct: 233 TMREIKSIGKEKTLEKDTKDKKLLLRYAKLFSDIISEELFRERLYARTVTVKIKTSDFTV 292
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFN 441
T++ TL KYI EDI A ++++ +L +RLIGL V+ +
Sbjct: 293 HTKSKTLNKYIRLGEDIYDVAYEIIESLKLDQYIRLIGLSVSNLS 337
>gi|421485956|ref|ZP_15933508.1| DNA polymerase IV [Achromobacter piechaudii HLE]
gi|400195737|gb|EJO28721.1| DNA polymerase IV [Achromobacter piechaudii HLE]
Length = 356
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 201/355 (56%), Gaps = 18/355 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+GKP+ V G S++C A+YEARRFG+ +AM A
Sbjct: 2 RKIVHVDMDAFYASVEQRDNPELRGKPVVVAWTGPRSVVCAASYEARRFGIHSAMSAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
+LCP+ I+VP DF +Y S R++F ++ SLDEAYLD+T + G+ S
Sbjct: 62 ERLCPQAIYVPPDFNRYREVSRQIRQIFARHTDLIEPLSLDEAYLDVT--INKCGLPSAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+ +R + EE GLT SAG+APN+ LAK+ SD NKP+GQFV+ + V+ F+ LP+
Sbjct: 120 EVAQVIRHQIREETGLTASAGIAPNKFLAKIASDWNKPDGQFVVRPGK--VLDFLQPLPV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
RK+ G+GKVT+ L + GI+T ++ + + + G+
Sbjct: 178 RKVPGVGKVTQARL-EQLGIHTVGDLATHSAEELEHYFGRYGRRLYELARGIDEREVQTD 236
Query: 341 RFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+ + +S+E TFS ED L L + +A+ + K+G GRT+ LKLKT F +
Sbjct: 237 QPLQQVSAETTFS--EDIRLDALGDAIDRMADRVWDQALKKGALGRTVVLKLKTDRFRIL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE--DKVRAP 448
TR+ T S+ ++ A +L + ELP RL G+ ++ F + ++ R P
Sbjct: 295 TRSQTSPNPPGSAAELAAVAKLLCERVELPPETLYRLAGVGMSNFADPAEQARQP 349
>gi|289577475|ref|YP_003476102.1| DNA-directed DNA polymerase [Thermoanaerobacter italicus Ab9]
gi|289527188|gb|ADD01540.1| DNA-directed DNA polymerase [Thermoanaerobacter italicus Ab9]
Length = 389
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 128/345 (37%), Positives = 198/345 (57%), Gaps = 14/345 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE NP KGKP+ VG +S ++ T +YEAR++G+ +AMP +
Sbjct: 1 MKRKIIHVDMDAFFASVEQHDNPEYKGKPVIVGGLSGRGVVSTCSYEARKYGIHSAMPMY 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+ARKLCP IF+ +Y S + P S+DEAYLD+T++ + +
Sbjct: 61 MARKLCPHGIFLSVRRKRYEEVSKQIFDILYSITPLVEPVSIDEAYLDVTDIDKNPEV-- 118
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IA+E++ V E GLT SAGV+ N+ LAK+ SD NKP+G V+ D + + LP
Sbjct: 119 --IAKEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFTVITEDMIP--DILKPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTP 338
+ K+ GIG+ +E L+ + GINT ++L+ L +F + +L + G+
Sbjct: 175 VSKVYGIGEKSEERLKSM-GINTIGDLLKLSQENLVEIFGKVGVEIYLRIR-GIDERPVE 232
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R KSI E+T T+DK LL ++++S ++ + GL RT+T+K+KT+ F +
Sbjct: 233 TMREIKSIGKEKTLEKDTKDKKLLLHYAKLFSDIISEELFRAGLYARTVTVKIKTSDFAI 292
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFN 441
T++ TL KYI SEDI A ++ +L +RLIGL V+ +
Sbjct: 293 HTKSKTLNKYIRLSEDIYNVAYEIIENIKLDQYIRLIGLSVSNLS 337
>gi|389872202|ref|YP_006379621.1| DNA polymerase IV [Advenella kashmirensis WT001]
gi|388537451|gb|AFK62639.1| DNA polymerase IV [Advenella kashmirensis WT001]
Length = 354
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 138/354 (38%), Positives = 201/354 (56%), Gaps = 25/354 (7%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGF 159
++R +H+DMDAFYA+VE NP LKG P+ V S+I A+YEAR+FG+R+AM
Sbjct: 1 MTRKIVHIDMDAFYASVELRENPQLKGLPVVVAWDSIRSVIVAASYEARKFGLRSAMSVR 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-S 218
AR+LCP I++ +FT Y S R +F +Y SLDEAYLD+T +GI S
Sbjct: 61 RARELCPHAIYIAPNFTLYREVSRQVRGIFQQYTDRIEPLSLDEAYLDVT--VNHKGIAS 118
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
E+A ++ ++ E LT SAGVAPN+ LAK+ SD NKPNG V+P R VM+F+ L
Sbjct: 119 ATEVARRIQEDIFRETSLTASAGVAPNKFLAKIASDWNKPNGICVVPPSR--VMSFLQDL 176
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF-SHSTADFFLSVGLGLGSTNT 337
P+ KI G+G+VT + + L+ L F ++ F L+ G+ L +T
Sbjct: 177 PLEKIPGVGRVTLAKFHRLQMKTIADLRLRSEWELTHHFGAYGHRLFELARGIDLREVDT 236
Query: 338 PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR----GRTLTLKLKTA 393
Q + IS+E TF D+ L Y +L + + ++ + ++ LR GRT+TLKLK+A
Sbjct: 237 NQQ--SQQISTETTF----DRDLPYLQLQDPLDAIARKLWEQVLRKRKFGRTVTLKLKSA 290
Query: 394 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS-----LRLIGLRVTQFNE 442
SF + TR+ T + S +++ +HA+ L A L RLIGL ++ F E
Sbjct: 291 SFRIVTRSQTYSNPLYSVDEV-RHAAATLLARLEADKRHTLYRLIGLGISAFAE 343
>gi|390169745|ref|ZP_10221678.1| DNA polymerase IV [Sphingobium indicum B90A]
gi|389587749|gb|EIM65811.1| DNA polymerase IV [Sphingobium indicum B90A]
Length = 359
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 138/349 (39%), Positives = 203/349 (58%), Gaps = 16/349 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI---CTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE +PSL+GK +AVG TA+YEAR++GVR+AMPG A
Sbjct: 6 RKIIHIDMDAFYASVEQRDDPSLRGKALAVGGGGPRGVVATASYEARKYGVRSAMPGARA 65
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
R+LCP+L+FV F Y S R++F ++ SLDEAYLD+T + GI S
Sbjct: 66 RRLCPDLLFVRPRFEVYRAVSAQVREIFSRFTDIIQPLSLDEAYLDVTR--NKPGIPSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 279
IAEE+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V+ P + A FI+ +P
Sbjct: 124 RIAEEIRRLIREETGLTASAGVSYNKLIAKLASDQNKPDGICVVRPQEGAA---FIAKMP 180
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+R+I G+G VT ++ GI T ++ + S A F+ G +
Sbjct: 181 VRRIHGVGPVTAKRMQ-ALGIETGADLRARDLPFLQHHFGSAALFYYRASRGEDDRPVHE 239
Query: 340 ARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+ RKS+S E TF +T + AL+ +L IAE L ++K G GRT+ LK+K A F +
Sbjct: 240 RQERKSVSVEDTFFDDLTAEDALIV-ELDRIAENLWGRIEKSGAYGRTVVLKVKFADFRI 298
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFNEDK 444
TR+ + + S + + + LL+A+LP+ + RL+GL V + ++
Sbjct: 299 ITRSRSFAAPLRSPDLLAETGRALLRAQLPLRMGARLLGLGVHNLDHEE 347
>gi|381199359|ref|ZP_09906509.1| DNA polymerase IV [Sphingobium yanoikuyae XLDN2-5]
Length = 365
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 136/341 (39%), Positives = 200/341 (58%), Gaps = 14/341 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI---CTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE +P L+GK +AVG T +YEAR+FGVR+AMPG A
Sbjct: 9 RKIIHIDMDAFYASVEQRDDPGLRGKAIAVGGGGPRGVVATCSYEARKFGVRSAMPGARA 68
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
R+LCPEL+FV F Y S R +F ++ SLDEAYLD+T+ + GI S
Sbjct: 69 RRLCPELLFVKPRFEVYRSVSAQIRVIFARFTDMIQPLSLDEAYLDVTQ--NKPGIASAT 126
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
++A+E+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V+ A F++ +P+
Sbjct: 127 QVAQEIRRLIQEETGLTASAGVSYNKLIAKLASDQNKPDGLCVVRPAEGA--DFMARMPV 184
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
R+I GIG VT + + GI T ++ + S+A F+ G +
Sbjct: 185 RRIHGIGPVTAERMHKL-GIETGADLRDRDLPFLQTHFGSSALFYYRAARGEDDRPVHER 243
Query: 341 RFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+ RKS+S E TF + ++ALL R++ IA+ L A ++K GRT+ LK+K A F +
Sbjct: 244 QERKSVSVEDTFFEDLVAEEALL-REIERIAQSLWARIEKAQAYGRTVVLKVKFADFRII 302
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRV 437
TR+ + + S E +++ LLKA+LP+ + RL+GL V
Sbjct: 303 TRSRSFAAPVRSVEQLVEAGRALLKAQLPLRMGARLLGLGV 343
>gi|325921296|ref|ZP_08183156.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas gardneri ATCC 19865]
gi|325548263|gb|EGD19257.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas gardneri ATCC 19865]
Length = 359
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 139/348 (39%), Positives = 202/348 (58%), Gaps = 18/348 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAMRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP+ +FVP DF +Y S R++F ++ SLDEAYLD+T+ + G+
Sbjct: 62 ERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F+ LP+
Sbjct: 120 EIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAFLLPLPV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELQAHFG-SFGQSLYRRARGIDERPVEP 235
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 236 DQEVQSVSSEDTFS--EDIALDALDPHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRI 293
Query: 398 RTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 442
TR+ T ++ +S E + + A L + ELP RL+G+ ++ F++
Sbjct: 294 LTRSYTPEQPPASLEALAEIALALTRRVELPADTRYRLVGVGLSGFSD 341
>gi|427409478|ref|ZP_18899680.1| hypothetical protein HMPREF9718_02154 [Sphingobium yanoikuyae ATCC
51230]
gi|425711611|gb|EKU74626.1| hypothetical protein HMPREF9718_02154 [Sphingobium yanoikuyae ATCC
51230]
Length = 365
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 135/341 (39%), Positives = 199/341 (58%), Gaps = 14/341 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI---CTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE +P L+GK +AVG T +YEAR+FGVR+AMPG A
Sbjct: 9 RKIIHIDMDAFYASVEQRDDPGLRGKAIAVGGGGPRGVVATCSYEARKFGVRSAMPGARA 68
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
R+LCPEL+FV F Y S R +F ++ SLDEAYLD+T+ + GI S
Sbjct: 69 RRLCPELLFVKPRFEVYRSVSAQIRAIFARFTDMIQPLSLDEAYLDVTQ--NKPGIASAT 126
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
++A+E+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V+ A F++ +P+
Sbjct: 127 QVAQEIRRLIQEETGLTASAGVSYNKLIAKLASDQNKPDGLCVVRPTEGA--DFMARMPV 184
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
R+I GIG VT + + GI T ++ + S+A F+ G +
Sbjct: 185 RRIHGIGPVTAERMHKL-GIETGADLRDRDMPFLKTHFGSSALFYYRAARGEDDRPVHER 243
Query: 341 RFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+ RKS+S E TF + ++ALL R++ IA+ L A ++K GRT+ LK+K A F +
Sbjct: 244 QGRKSVSVEDTFFEDLVAEEALL-REIERIAQSLWARIEKAQAYGRTVVLKVKFADFRII 302
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRV 437
TR+ + + S E ++ LLKA+LP+ + RL+GL +
Sbjct: 303 TRSRSFAAPVRSVEQLVDAGRALLKAQLPLRMGARLLGLGI 343
>gi|399926725|ref|ZP_10784083.1| DNA polymerase IV, damage-inducible protein DinB [Myroides
injenensis M09-0166]
Length = 347
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 137/343 (39%), Positives = 196/343 (57%), Gaps = 11/343 (3%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE L P L+GK +AVG S ++ A+YEAR FGVR+A+ G +A+K CP L
Sbjct: 1 MDAFYASVEQLDFPELRGKAIAVGGSSERGVVAAASYEAREFGVRSAISGVLAKKRCPHL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFV F +Y S RK+F +Y SLDEA+LD+T+ + S IA E+R
Sbjct: 61 IFVKPRFDRYKEISREIRKIFHEYTDLVEPLSLDEAFLDVTK-NKINCPSATLIAYEIRK 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
+YE LT SAG++ N+ LAK+ SD NKPNGQ + D V+ F+ +L I+K GIGK
Sbjct: 120 KIYERLQLTASAGISINKFLAKIASDYNKPNGQKTINPDE--VIEFLENLEIKKFFGIGK 177
Query: 289 VTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSIS 347
T + FGI T +++ +K L F + D++ ++ G+ + R KS+
Sbjct: 178 KTAEKMYH-FGIFTGKDLKEKSLDFLVTHFGKAGTDYY-NIVRGVHESPVQPNRKIKSVG 235
Query: 348 SERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK 406
+ERTF + L +L I E L ++K+ + G+T+TLKLK + F +TR+ T+
Sbjct: 236 TERTFDENLSSEVFLMERLDLIVEELGLRLKKQNVAGKTITLKLKYSDFSQQTRSATVPY 295
Query: 407 YISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAP 448
YIS E IL LL E L S+RLIG+ V+ N + + P
Sbjct: 296 YISDRELILDKVKELLYQEKLKDSVRLIGVAVSNLNTEASKKP 338
>gi|407690031|ref|YP_006813615.1| DNA polymerase IV 2 [Sinorhizobium meliloti Rm41]
gi|407321206|emb|CCM69808.1| DNA polymerase IV 2 [Sinorhizobium meliloti Rm41]
Length = 378
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 192/345 (55%), Gaps = 14/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEAR+FGV +AMP A
Sbjct: 26 RKIIHIDMDAFYASVEQRDNPELRGKPVAVGYPEARGVVAAASYEARKFGVHSAMPSVTA 85
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CPELIFVP F Y S + +F +Y P SLDEAYLD+TE + ++ E
Sbjct: 86 KRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLIEPLSLDEAYLDVTENLKGLRLA-TE 144
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAEE+RT + E LT SAGV+ N+ LAK+ SD KP+G FV+ R F+ +LP++
Sbjct: 145 IAEEIRTRIKAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKRGP--EFVQALPVK 202
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
K G+G T ++ + GI T ++ + + +F + G+ R
Sbjct: 203 KFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDEREVKPDR 261
Query: 342 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRGRTLTLKLKTASFEVR 398
RKSI +E TF ED L A + ++ + G+RG+T+TLK+K A F
Sbjct: 262 IRKSIGAEDTFR--EDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTLKVKWADFTQI 319
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
TR+ T+ I+S ++ + A +LL PV +RL+G+ ++ +
Sbjct: 320 TRSKTIVAPIASVAEMREIAELLLSPIFPVPKGIRLLGVTLSSLD 364
>gi|380513106|ref|ZP_09856513.1| DNA polymerase IV [Xanthomonas sacchari NCPPB 4393]
Length = 356
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 138/349 (39%), Positives = 199/349 (57%), Gaps = 20/349 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +P+L+GKP+ V G S++C A+YEAR FGVR+AMP A
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPALRGKPVVVAWRGMRSVVCAASYEARVFGVRSAMPALRA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T E + E
Sbjct: 65 ERLCPDAIFVPPDFARYKAVSRQVREIFQRHTDMIEPLSLDEAYLDVTAPKGELR-TATE 123
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+ +R + E LT SAG+APN+ LAK+ SD KP+GQFV+ R V F++ LP+
Sbjct: 124 IAQTIRAQIRAETELTASAGIAPNKFLAKIASDWRKPDGQFVIRPHR--VEAFLTPLPVN 181
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
K+ G+GKV E L ++ GI T ++ + S G+ +
Sbjct: 182 KVPGVGKVMEAKLAEL-GIATVGDLRARSEAELEARFGSFGLRLYQRARGIDERPVESDQ 240
Query: 342 FRKSISSERTFSVTEDKAL-----LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
+SISSE TF+ ED AL R+LAE + +A + E + RT+ LKLKTA F
Sbjct: 241 PVQSISSEDTFA--EDLALDALEPAIRQLAE--KTWNATRRTERI-ARTVVLKLKTAQFR 295
Query: 397 VRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LRLIGLRVTQFNE 442
+ TR+ T ++ S + ++ A L + +LP S RL+G+ ++ F+E
Sbjct: 296 ILTRSFTPEQPPESLQTLIDIALALRARVDLPASTRYRLVGVGLSGFHE 344
>gi|421540704|ref|ZP_15986846.1| DNA polymerase IV [Neisseria meningitidis 93004]
gi|402318254|gb|EJU53778.1| DNA polymerase IV [Neisseria meningitidis 93004]
Length = 352
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 130/345 (37%), Positives = 196/345 (56%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTHNFKNIPYAG- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFRLIGIGV 338
>gi|341613645|ref|ZP_08700514.1| DNA polymerase IV [Citromicrobium sp. JLT1363]
Length = 380
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 196/347 (56%), Gaps = 14/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE NP L+GKP+AVG S ++ A+YEAR+FGV++AMP A
Sbjct: 22 RKIIHVDMDAFFASVEQRDNPELRGKPVAVGGSSGRGVVAAASYEARKFGVKSAMPSVTA 81
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
++LCP+LIFV + F Y S+ R +F + SLDEAYLD+TE + GI +
Sbjct: 82 KRLCPDLIFVKSRFDAYREASEQIRTIFRHHTDLVEPLSLDEAYLDVTE--NKLGIAAAT 139
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 279
++A+ +R + + LT SAGV+ N+ LAK+ SD NKP+G V+ P + A F+ +LP
Sbjct: 140 QVAQMIRQEIRAKTQLTASAGVSYNKFLAKLASDQNKPDGMCVIRPGEGAA---FVQTLP 196
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
IR+ G+G E + + GI T ++ K A S ++ G+
Sbjct: 197 IRRFHGVGPRGEEKMARL-GIATGADLAAKDRAWLAQHFGSFGEYLYRAARGIDERPVRV 255
Query: 340 ARFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKSI ERTFS +A R L EI E++ +++ RGRT+TLKLK F++
Sbjct: 256 NRIRKSIGGERTFSADRHEAEELRTTLDEIVEIVWERIERAQARGRTVTLKLKYNDFQLM 315
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNED 443
TRA +L + + + +L++ LP+ +RL+GL ++ D
Sbjct: 316 TRARSLPRNVDGKVEFAALGHEILESLLPLPKPIRLMGLTLSNLERD 362
>gi|348551130|ref|XP_003461383.1| PREDICTED: DNA polymerase kappa-like [Cavia porcellus]
Length = 853
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/262 (43%), Positives = 165/262 (62%), Gaps = 10/262 (3%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 287 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRQAVMEFI 346
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRKI GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 347 KDLPIRKISGIGKVTEKMLK-ALGIITCAELYQQRALLSLLFSETSWHYFLHISLGLGST 405
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + RKS+S ERTF+ Y E+ ++ D+QKEGL+GRT+T+KLK +F
Sbjct: 406 HLARDGERKSMSVERTFNEINKAEDQYSLCQELCSEIAQDLQKEGLKGRTVTVKLKNVNF 465
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 449
EV+TRA T+ +S+ E+I A LL+ E+ P+ LRL+G+R++ F + A
Sbjct: 466 EVKTRASTVSSVVSTEEEIFAIAKELLRTEIDAASPYPLRLRLMGVRISSFPSE---ADK 522
Query: 450 DPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ +G+ + G
Sbjct: 523 KHQQRSIIGFLQAGNQALSAPG 544
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 86/154 (55%), Positives = 114/154 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMGATKGSRFYGNELKKEKQVNQRIENMMQQKARITSQQLREAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE RDLS + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEHCRDLSNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYS 182
RFGVRAAMPGFIA++LCP LI VP +F KY S
Sbjct: 145 RFGVRAAMPGFIAKRLCPHLIIVPLNFDKYRVVS 178
>gi|393773805|ref|ZP_10362197.1| DNA polymerase IV [Novosphingobium sp. Rr 2-17]
gi|392720746|gb|EIZ78219.1| DNA polymerase IV [Novosphingobium sp. Rr 2-17]
Length = 373
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 133/345 (38%), Positives = 194/345 (56%), Gaps = 16/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+G P+AVG S ++ A+YEAR FGVR+AMP A
Sbjct: 18 RKIIHVDMDAFYASVEQRDDPSLRGLPVAVGGSSGRGVVAAASYEARVFGVRSAMPSARA 77
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+L+F F Y S R +F Y P+ SLDEAYLD+T + G S
Sbjct: 78 VRLCPDLVFCKPRFEVYREVSQQIRAIFLDYTPHVEPLSLDEAYLDVTADLKGIG-SATR 136
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA+E+R + E GLT SAGV+ N+ +AK+ SD NKP+G V+ P D A F+++LP+
Sbjct: 137 IAQEIRRRIRAETGLTASAGVSYNKFIAKLASDENKPDGLCVIRPGDGAA---FVAALPV 193
Query: 281 RKIGGIG-KVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTP 338
R+ G+G + E + R GI T ++ K + L A F S A++ G+
Sbjct: 194 RRFHGVGPRGAEKMAR--LGIETGADLASKDLAFLRANFG-SFAEYLFRAARGVDLRQVR 250
Query: 339 QARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ ERT F D L + I +++ +++ RGRT+TLKL+ A F+
Sbjct: 251 ADRPRKSVGGERTFFENIVDPVALRETMDHIVDVVWERIERSQARGRTVTLKLRYADFQT 310
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
TRA +L +++ + LL E+P+ +RL+GL ++
Sbjct: 311 LTRARSLPHFVADKAEFAALGHALLDEEMPLPQPIRLMGLTLSAL 355
>gi|294625057|ref|ZP_06703705.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292600642|gb|EFF44731.1| DNA polymerase IV [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
Length = 359
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 198/347 (57%), Gaps = 16/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T+ + G+
Sbjct: 62 ERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F+ L +
Sbjct: 120 EVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAFLLPLKV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+I G+GKV + L GI T ++ Q+ S G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDERPVEPD 236
Query: 341 RFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 237 QEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRIL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 442
TR+ T ++ +S E + + A L + ELP RL+G+ ++ F++
Sbjct: 295 TRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLSGFSD 341
>gi|340028073|ref|ZP_08664136.1| DNA-directed DNA polymerase [Paracoccus sp. TRP]
Length = 363
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 195/355 (54%), Gaps = 12/355 (3%)
Query: 100 TRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM--SMICTANYEARRFGVRAAMP 157
T + R +HVDMDAFYA+VE N L+G+P+AVG + ++ A+YEARRFGVR+AMP
Sbjct: 5 TEERVRRIVHVDMDAFYASVEQRDNSELRGRPVAVGGIRRGVVAAASYEARRFGVRSAMP 64
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A +LCP+L+FV F Y S R +F +Y P SLDEAYLD+T+ + R
Sbjct: 65 SMRAMRLCPDLVFVKPRFDVYRAVSQQVRDIFFEYTPLVEPLSLDEAYLDLTDYLQGR-- 122
Query: 218 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
+ IA+E+R + E GLT SAGV+ N+ LAK+ SD KP+G FV+P + A F+
Sbjct: 123 TATRIAQEIRARIREATGLTASAGVSYNKFLAKLASDQRKPDGLFVIPPE--AGPEFVHG 180
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
LPI + GIG T + + GI T ++ Q L A F S ++ ++ G+ +
Sbjct: 181 LPIGRFHGIGPATAARM-ESHGILTGADLARQTLEFLTARFGKS-GTYYWNIARGIDTRE 238
Query: 337 TPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKSI +E T F D + L +A+ + G GRT+TLK+K F
Sbjct: 239 VKPNRIRKSIGAENTYFEDLRDLPAAHEALEVLADKVWRHATNAGRVGRTVTLKVKYGDF 298
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQFNEDKVRAP 448
TRA +L + + S +++L A LL P +RL+G+ ++ +E + P
Sbjct: 299 RQITRARSLPRPVESRDEMLGMARDLLGPVFADPHGVRLLGITLSGLDEARQDEP 353
>gi|31127116|gb|AAH52820.1| Polk protein [Mus musculus]
Length = 739
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 166/262 (63%), Gaps = 10/262 (3%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 150 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 209
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 210 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 268
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 269 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 328
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 449
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 329 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ 388
Query: 450 DPTQKTLTNFMTSGHASKKIVG 471
Q+++ F+ +G+ + G
Sbjct: 389 ---QRSIIGFLQAGNQALSSTG 407
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 189 FCKYDPNFMAASLDEAYLDITEVCRER 215
F +YDPNFMA SLDEAYL+IT+ +ER
Sbjct: 48 FYEYDPNFMAMSLDEAYLNITQHLQER 74
Score = 42.4 bits (98), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 24/27 (88%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFE 55
KAGM+G+DKEK+ K++ E +KGS+++E
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYE 50
>gi|304317842|ref|YP_003852987.1| DNA-directed DNA polymerase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779344|gb|ADL69903.1| DNA-directed DNA polymerase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 378
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 214/355 (60%), Gaps = 22/355 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE NP LKGKP+ VG +S ++ T +YEAR++G+ +AMP ++A
Sbjct: 2 RKIIHVDMDAFFASVEQHDNPKLKGKPVIVGGLSGRGVVSTCSYEARKYGIHSAMPMYMA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVF-CKYDPNFMA--ASLDEAYLDITEVCRERGIS 218
+ LCP +F+P F +Y ++++KVF Y+ + S+DEAYLD+T++ +
Sbjct: 62 KTLCPHGVFLPVRFERY---REVSKKVFDILYEITNIVEPLSIDEAYLDVTDIDKNPE-- 116
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
+IA+E++ VY GLT SAGV+ N+ LAK+ SD NKP+G V+ D V + L
Sbjct: 117 --DIAKEIKEKVYMTTGLTVSAGVSYNKFLAKIASDWNKPDGLMVISED--MVPDILRPL 172
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSV-GLGLGSTN 336
+ K+ GIG+ + L+ + GI +++L+ L +F + + + G+ L
Sbjct: 173 SVSKVYGIGEKSSERLKKI-GIEKVDDLLKLSEEELTNIFGKYGKEIYDRIRGIDLRPVE 231
Query: 337 TPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
T R KSI E T T+D LL + L ++++S+++++E L RT+T+K+KT+ F
Sbjct: 232 T--YRETKSIGKETTLKKDTDDIDLLSKYLKRFSKIISSELKEERLYCRTVTVKIKTSHF 289
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFNEDKVRAPS 449
V T++ TL +YI S EDI A+ +LK +++ +RLIGL V+ + +K++ S
Sbjct: 290 TVHTKSRTLNEYIDSPEDIYNVATAILKESKISQPVRLIGLSVSNLSRNKIKQLS 344
>gi|433469657|ref|ZP_20427074.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
gi|432202554|gb|ELK58614.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
Length = 352
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 195/345 (56%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCASLLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|384215689|ref|YP_005606855.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
gi|354954588|dbj|BAL07267.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 6]
Length = 368
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 199/350 (56%), Gaps = 20/350 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEAR+FGVR+AMP A
Sbjct: 17 RKIIHIDMDAFYASVEQRDNPDLRGKPVAVGGSRERGVVAAASYEARKFGVRSAMPSVTA 76
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFV F Y S R++F ++ P SLDEAYLD+TE + GI
Sbjct: 77 KRQCPDLIFVKPRFEVYKAVSQQIREIFAEHTPTIEPLSLDEAYLDVTE-----NLQGIP 131
Query: 222 IAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
+A + +R + E GL SAG++ N+ LAK+ SD KPNGQ+V+ + F+ +
Sbjct: 132 LARDVALAIRAKIKEVTGLNASAGISYNKFLAKLASDHRKPNGQYVITPEMGP--AFVEN 189
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ K GIG T + + G+ T +M + ++ S+ G+ +
Sbjct: 190 LPVGKFHGIGPATGAKM-NALGLYTGLDMRNQSLEFMQTNFGKAGTYYYSISRGVDNREV 248
Query: 338 PQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKS+ +E TFS + E +A++ ++ + + + +++G RGRT+TLK+K A F
Sbjct: 249 RADRVRKSVGAENTFSTDLIEFEAMV-SEVQPLIDKVWRHCEEKGSRGRTVTLKVKFADF 307
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAE--LPVSLRLIGLRVTQFNED 443
E+ TR+ ++ +SS D+ + LL+ E LP +RL+G+ ++ + +
Sbjct: 308 EIMTRSRSVPTAVSSRSDLERLVISLLENETPLPRPVRLLGISLSSLHPE 357
>gi|21244347|ref|NP_643929.1| DNA polymerase IV [Xanthomonas axonopodis pv. citri str. 306]
gi|24211643|sp|Q8PGJ4.1|DPO4_XANAC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21110002|gb|AAM38465.1| DNA polymerase IV [Xanthomonas axonopodis pv. citri str. 306]
Length = 359
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 136/347 (39%), Positives = 197/347 (56%), Gaps = 16/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARIFGIRSAMPAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP+ IFVP DFT+Y S R++F ++ SLDEAYLD+T + G+
Sbjct: 62 ERLCPDAIFVPPDFTRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F+ L +
Sbjct: 120 EVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAFLLPLKV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+I G+GKV + L GI T ++ Q+ S G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDERPVEPD 236
Query: 341 RFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 237 QEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRIL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 442
TR+ T ++ +S E + + A L + ELP RL+G+ + F++
Sbjct: 295 TRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGFSD 341
>gi|163856930|ref|YP_001631228.1| DNA polymerase IV [Bordetella petrii DSM 12804]
gi|163260658|emb|CAP42960.1| DNA polymerase IV [Bordetella petrii]
Length = 371
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 130/350 (37%), Positives = 204/350 (58%), Gaps = 20/350 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +HVDMDAFYA+VE NP+L+G P+ V G S++C A+YEARR+GV +AM
Sbjct: 5 SRKIVHVDMDAFYASVEQRDNPALRGLPVVVAWEGPRSVVCAASYEARRYGVHSAMSVAR 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP DF +Y S R++F ++ SLDEAYLD+T V ++ S
Sbjct: 65 AQRLCPDAVYVPPDFNRYRDVSRQVRQIFARHTDLIEPLSLDEAYLDVT-VNKQGLPSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
++A +R+ + +E LT SAGVAPN+ LAK+ SD +KP+G FV+ + V+ F+ LP+
Sbjct: 124 DVARSIRSEILQETRLTASAGVAPNKFLAKIASDWDKPDGLFVIKPAQ--VLAFLQPLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFF-----LSVGLGLGST 335
RK+ G+GKV + L + G++T ++ + ++ H + LS G+
Sbjct: 182 RKVPGVGKVMQARL-EALGVHTVGDLARHTAV---ELEHHFGRYGIRLHELSQGIDRREV 237
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
P A ++ IS+E TF+V + L L +A + K+G GRT+ LKLKT F
Sbjct: 238 Q-PDAPLQQ-ISAETTFAVDQPLHALSEPLGRLAVKVWGQAVKKGAVGRTVVLKLKTDRF 295
Query: 396 EVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LRLIGLRVTQFNE 442
+ TR +TL + +S+E + + A L + +LP RL G+ ++ F++
Sbjct: 296 RILTRTLTLTRAPTSAEALAEVAFQLCARVDLPAGTRYRLAGVGMSNFDD 345
>gi|452751626|ref|ZP_21951371.1| DNA polymerase IV [alpha proteobacterium JLT2015]
gi|451960845|gb|EMD83256.1| DNA polymerase IV [alpha proteobacterium JLT2015]
Length = 362
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 188/332 (56%), Gaps = 19/332 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE NP L+GKP+AVG ++ A+YEAR FGVR+AMP A
Sbjct: 9 RKIIHVDMDAFFASVEQRDNPDLRGKPVAVGGSKARGVVAAASYEARVFGVRSAMPSVTA 68
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+LIFV + F Y S R++F ++ SLDEAYLD+T R E
Sbjct: 69 QRLCPDLIFVKSRFDVYRSVSQQIREIFARHTDLIEPLSLDEAYLDVTASGR----PATE 124
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + LT SAGV+ N+ LAK+ SD NKP+G V+ P++ A F++ LP+
Sbjct: 125 IAREIRAEILSTTRLTASAGVSYNKFLAKLASDQNKPDGLCVIRPHEGAA---FVAGLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
++ G+G VT + + FGI T ++ K L F S AD++ G+
Sbjct: 182 KRFHGVGPVTAAKM-ERFGIRTGADLAAKSREWLQGNFGRS-ADYYYGAARGIDHRPVRA 239
Query: 340 ARFRKSISSERTFSVTED---KALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
+R RKSI +ERTFS ED +A L L + E + + + G GRT+TLK+K A F+
Sbjct: 240 SRVRKSIGAERTFS--EDFRTRADLLAALEPVIEAVWERIDRAGAAGRTVTLKIKFADFQ 297
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV 428
TRA + + +S + LL+ ELPV
Sbjct: 298 QITRARSFETPVSDRGMFTRIGHDLLERELPV 329
>gi|87200669|ref|YP_497926.1| DNA polymerase IV [Novosphingobium aromaticivorans DSM 12444]
gi|87136350|gb|ABD27092.1| DNA-directed DNA polymerase [Novosphingobium aromaticivorans DSM
12444]
Length = 378
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 134/343 (39%), Positives = 191/343 (55%), Gaps = 12/343 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE NP L+GKP+AVG S ++ A+YEAR+FGVR+AMP A
Sbjct: 18 RKVIHVDMDAFFASVEQRDNPDLRGKPVAVGGSSGRGVVAAASYEARKFGVRSAMPSARA 77
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
LCP+LIF F Y S R +F Y P+ SLDEAYLD+T+ R G S
Sbjct: 78 IVLCPDLIFCRPRFDVYRSVSQQIRAIFLDYTPHVEPLSLDEAYLDVTDDVRGIG-SATR 136
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAE +R + + GLT SAGV+ N+ LAK+ SD NKP+G V+ A F++SLP+R
Sbjct: 137 IAELIRRRIKADTGLTASAGVSYNKFLAKIASDQNKPDGMCVIRPGEGA--QFVASLPVR 194
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
+ GIG + GI T ++ + S AD+ G+ R
Sbjct: 195 RFHGIGPRGAEKM-AALGIETGADLRARDLPFLRQHFGSLADYLYRAVRGIDLRQVKADR 253
Query: 342 FRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
RKS+ +ERTF ++ A L L I E++ +++ G GRT+TLK+K F T
Sbjct: 254 PRKSVGAERTFERDISSGPA-LRETLERILEIVWDRIERSGASGRTVTLKMKFNDFTPIT 312
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 440
RA +L + I+ E+ + + LL A+LP++ +RL+GL ++
Sbjct: 313 RARSLPRPIADKEEFARLSRELLDAQLPLAKPIRLMGLTLSAL 355
>gi|334345787|ref|YP_004554339.1| DNA polymerase IV [Sphingobium chlorophenolicum L-1]
gi|334102409|gb|AEG49833.1| DNA polymerase IV [Sphingobium chlorophenolicum L-1]
Length = 359
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 134/347 (38%), Positives = 201/347 (57%), Gaps = 12/347 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI---CTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE +PSL+GK +AVG TA+YEAR++GVR+AMPG A
Sbjct: 6 RKIIHIDMDAFYASVEQRDDPSLRGKALAVGGGGPRGVVATASYEARKYGVRSAMPGARA 65
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
R+LCP+L+FV F Y S R++F ++ SLDEAYLD+T + S
Sbjct: 66 RRLCPDLLFVRPRFEVYRAVSAQVREIFSRFTDIIQPLSLDEAYLDVTR-NKPDIPSATR 124
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAEE+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V+ + A FI+ +P+R
Sbjct: 125 IAEEIRRLIREETGLTASAGVSYNKLIAKLASDQNKPDGICVVRPEEGA--AFIAKMPVR 182
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
+I G+G VT ++ GI T ++ + S A F+ G + +
Sbjct: 183 RIHGVGPVTAKRMQ-ALGIETGADLRARDLAFLQHHFGSAALFYYRASRGEDDRPVHERQ 241
Query: 342 FRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
RKS+S E TF +T + AL+ ++ IAE L + ++K G GRT+ LK+K A F + T
Sbjct: 242 ERKSVSVEDTFFDDLTAEDALIT-EIDRIAENLWSRIEKSGAYGRTVVLKVKFADFRIIT 300
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFNEDK 444
R+ + + S + + + LL+A+LP+ + RL+GL V + ++
Sbjct: 301 RSKSFGGPVRSPDILAETGRALLRAQLPLRMGARLLGLGVHNLDHEE 347
>gi|385341648|ref|YP_005895519.1| DNA polymerase IV [Neisseria meningitidis M01-240149]
gi|385857505|ref|YP_005904017.1| DNA polymerase IV [Neisseria meningitidis NZ-05/33]
gi|325201854|gb|ADY97308.1| DNA polymerase IV [Neisseria meningitidis M01-240149]
gi|325208394|gb|ADZ03846.1| DNA polymerase IV [Neisseria meningitidis NZ-05/33]
Length = 352
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 195/345 (56%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCASLLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|254283888|ref|ZP_04958856.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR51-B]
gi|219680091|gb|EED36440.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR51-B]
Length = 371
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 143/363 (39%), Positives = 199/363 (54%), Gaps = 15/363 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+GKP+AVG + ++ A+YEAR FGVR+AMP A
Sbjct: 10 RKIIHVDMDAFYASVEQRDNPDLRGKPIAVGGSAQRGVVAAASYEARTFGVRSAMPSITA 69
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ C EL+FV F Y S + +F +Y SLDEAYLD++E RER S E
Sbjct: 70 KRKCSELLFVKPRFDVYRTVSQQIQAIFRRYTALVEPLSLDEAYLDVSE-DRERVGSATE 128
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
AE +R ++EE GLT SAGV+ N+ LAKV SD NKPNG V+ P++ A F + LP
Sbjct: 129 TAERIRREIFEEVGLTASAGVSYNKFLAKVASDQNKPNGLCVIRPHEGAA---FAAGLPA 185
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
R+ G+G T + GI++ ++ Q L F S A + G
Sbjct: 186 RRFFGVGPKTAQRM-AALGIHSGADLRAQSLDFLQQHFGKS-ALYLYRASRGEDFREVRP 243
Query: 340 ARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKSI ERT+S + L L +I +++ ++ RGRT+TLK+K + F
Sbjct: 244 NRERKSIGGERTYSTDLKHSQELRAALVDIIDLVWRRIEARTARGRTVTLKIKFSDFRQI 303
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF-NEDKVRAPSDPTQKT 455
TRA ++ I S E + A LL+ LPV +RLIGL ++ + D + ++P K
Sbjct: 304 TRARSVHSCIDSLEGFSQIAHALLETVLPVERGVRLIGLTLSSLESSDAPTSSAEPATKA 363
Query: 456 LTN 458
LT
Sbjct: 364 LTQ 366
>gi|313668564|ref|YP_004048848.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
gi|313006026|emb|CBN87485.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
Length = 352
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 194/347 (55%), Gaps = 18/347 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWKGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VEAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 440
+ TR +T + +L+ A +L P + RLIG+ V +
Sbjct: 295 IITRTLTYSSVLPDCASLLQAAQMLTNRVPPQTEDAFRLIGIGVGRL 341
>gi|385338282|ref|YP_005892155.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis WUE 2594]
gi|433475868|ref|ZP_20433205.1| impB/mucB/samB family protein [Neisseria meningitidis 88050]
gi|433513766|ref|ZP_20470555.1| impB/mucB/samB family protein [Neisseria meningitidis 63049]
gi|433515222|ref|ZP_20471995.1| impB/mucB/samB family protein [Neisseria meningitidis 2004090]
gi|433518610|ref|ZP_20475345.1| impB/mucB/samB family protein [Neisseria meningitidis 96023]
gi|433524427|ref|ZP_20481085.1| impB/mucB/samB family protein [Neisseria meningitidis 97020]
gi|433528518|ref|ZP_20485127.1| impB/mucB/samB family protein [Neisseria meningitidis NM3652]
gi|433530726|ref|ZP_20487310.1| impB/mucB/samB family protein [Neisseria meningitidis NM3642]
gi|433532988|ref|ZP_20489550.1| impB/mucB/samB family protein [Neisseria meningitidis 2007056]
gi|433534767|ref|ZP_20491305.1| impB/mucB/samB family protein [Neisseria meningitidis 2001212]
gi|319410696|emb|CBY91075.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis WUE 2594]
gi|432208977|gb|ELK64948.1| impB/mucB/samB family protein [Neisseria meningitidis 88050]
gi|432247075|gb|ELL02518.1| impB/mucB/samB family protein [Neisseria meningitidis 63049]
gi|432251130|gb|ELL06502.1| impB/mucB/samB family protein [Neisseria meningitidis 96023]
gi|432255018|gb|ELL10351.1| impB/mucB/samB family protein [Neisseria meningitidis 2004090]
gi|432258654|gb|ELL13935.1| impB/mucB/samB family protein [Neisseria meningitidis 97020]
gi|432265319|gb|ELL20515.1| impB/mucB/samB family protein [Neisseria meningitidis NM3652]
gi|432265536|gb|ELL20728.1| impB/mucB/samB family protein [Neisseria meningitidis NM3642]
gi|432266344|gb|ELL21530.1| impB/mucB/samB family protein [Neisseria meningitidis 2007056]
gi|432271036|gb|ELL26166.1| impB/mucB/samB family protein [Neisseria meningitidis 2001212]
Length = 352
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 195/345 (56%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCTALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|365885711|ref|ZP_09424698.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. ORS 375]
gi|365285650|emb|CCD97229.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. ORS 375]
Length = 368
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 127/356 (35%), Positives = 200/356 (56%), Gaps = 20/356 (5%)
Query: 98 EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRA 154
+A + R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEAR+FGVR+
Sbjct: 9 DAAPTVIRKIIHIDMDAFYASVEQRDNPELRGKPVAVGGSRERGVVAAASYEARKFGVRS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AMP A++LCP+LIFV F Y S R +F ++ P SLDEAYLD+T+
Sbjct: 69 AMPSVTAKRLCPDLIFVKPRFEVYKAISQQIRAIFAEHTPVIEPLSLDEAYLDVTD---- 124
Query: 215 RGISGI----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMA 270
+ GI +IA ++R + E GL SAG++ N+ LAK+ SD KPNGQ+V+ + A
Sbjct: 125 -NLQGIPLARDIALQIRARIKAETGLNASAGISYNKFLAKLASDHRKPNGQYVISPEMGA 183
Query: 271 VMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL 330
F+ LP+ K GIG T + GI+T ++ + ++ +
Sbjct: 184 --AFVEGLPVGKFHGIGPATAAKF-NALGIHTGLDIRNQSLPFLQQHFGKAGSYYYWISR 240
Query: 331 GLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 388
G+ R RKSI +E TF+ +TE + + +L + + + + G RGRT+TL
Sbjct: 241 GIDHRPVRANRIRKSIGAENTFAADLTEFEPMAA-ELQPLIDKVWRHCEATGNRGRTVTL 299
Query: 389 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 442
K+K A FE+ TR+ ++ +++ ++ + + LL+AELP+ +RL+G+ ++ E
Sbjct: 300 KVKFADFEIITRSRSVVTVVATRAELERLSLALLQAELPLPKPVRLLGVSLSSLQE 355
>gi|218768451|ref|YP_002342963.1| DNA polymerase IV [Neisseria meningitidis Z2491]
gi|433480065|ref|ZP_20437352.1| impB/mucB/samB family protein [Neisseria meningitidis 63041]
gi|433520223|ref|ZP_20476941.1| impB/mucB/samB family protein [Neisseria meningitidis 65014]
gi|433541303|ref|ZP_20497752.1| impB/mucB/samB family protein [Neisseria meningitidis 63006]
gi|22095638|sp|Q9JRG1.1|DPO4_NEIMA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|6900413|emb|CAB72023.1| putative DNA-damage inducible protein P [Neisseria meningitidis]
gi|121052459|emb|CAM08795.1| impB/mucB/samB family protein [Neisseria meningitidis Z2491]
gi|432215025|gb|ELK70916.1| impB/mucB/samB family protein [Neisseria meningitidis 63041]
gi|432253761|gb|ELL09100.1| impB/mucB/samB family protein [Neisseria meningitidis 65014]
gi|432276950|gb|ELL32002.1| impB/mucB/samB family protein [Neisseria meningitidis 63006]
Length = 352
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 195/345 (56%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERECLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCTALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|269214646|ref|ZP_05986970.2| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
gi|269209306|gb|EEZ75761.1| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
Length = 368
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 194/347 (55%), Gaps = 18/347 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 19 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 78
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G
Sbjct: 79 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG- 137
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 138 DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 195
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 196 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 250
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 251 VEAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 310
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 440
+ TR +T + +L+ A +L P + RLIG+ V +
Sbjct: 311 IITRTLTYSSVLPDCASLLQAAQMLTNRVPPQTEDAFRLIGIGVGRL 357
>gi|304382732|ref|ZP_07365223.1| DNA-directed DNA polymerase IV [Prevotella marshii DSM 16973]
gi|304336127|gb|EFM02372.1| DNA-directed DNA polymerase IV [Prevotella marshii DSM 16973]
Length = 400
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 135/345 (39%), Positives = 192/345 (55%), Gaps = 19/345 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE P L+GKP+AVG ++CTA+YEARRFGVR+AMP A
Sbjct: 41 RKIIHIDMDAFFASVEQRERPELRGKPVAVGFDGPRGVLCTASYEARRFGVRSAMPVKKA 100
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+ CP+LI VP + Y S+ ++F +Y SLDEA+LDIT ++GI +
Sbjct: 101 KLRCPQLIIVPVRHSLYREISEQVHEIFGRYTDLIEPLSLDEAFLDITH--NKKGIEMAV 158
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+E+R S+ EE LT SAG++ N+ LAK+ SD KP+G FV+ DR + FI+ LPI
Sbjct: 159 DIAKEIRQSIREELHLTASAGISYNKFLAKIASDFRKPDGLFVIHPDR--ALDFIARLPI 216
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
G+G T + + + + L VF + A ++ G+
Sbjct: 217 HDFWGVGSKTAAVFHKMGVFDGAQLRACSRRHLTEVFGKAGAMYY-EFARGIDHRPVVTE 275
Query: 341 RFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKS+S E+TF + + +L +L E L ++K G G TLTLK+K F
Sbjct: 276 RERKSVSCEQTFEEDIYSNSTVLI-ELYHTMEDLVRRLEKTGFEGHTLTLKIKYGDFSQV 334
Query: 399 TRAVTLQKYISSSEDILKHASVLLKA-----ELPVSLRLIGLRVT 438
TR++T K + S DIL A LLK+ E P+ RLIGL V+
Sbjct: 335 TRSMTTGKTLRSKADILPRAKQLLKSISWSVEKPI--RLIGLAVS 377
>gi|298368851|ref|ZP_06980169.1| DNA polymerase IV [Neisseria sp. oral taxon 014 str. F0314]
gi|298282854|gb|EFI24341.1| DNA polymerase IV [Neisseria sp. oral taxon 014 str. F0314]
Length = 352
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 129/344 (37%), Positives = 192/344 (55%), Gaps = 14/344 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LKGKP+ V G+ S+IC A+YEAR+FG+ +AM A
Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGKPVVVAWEGSRSVICAASYEARQFGLHSAMSVATA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+ ++VP F Y S +F +Y SLDEAYLD+T+ ++ + +
Sbjct: 64 KRLCPQAVYVPPHFDLYRSISAQIHGIFRRYTTLIEPLSLDEAYLDVTDNLQQIPYAS-D 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+AE++R + E GLT SAG+APN+ LAK+ SD KPNGQFVLP + A F+ +LP+
Sbjct: 123 VAEKIRAEILAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKAA--AFLETLPLG 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G+GKVT ++ + G+ T ++ ++G LL +F + + G+
Sbjct: 181 KIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELLN-LFGRYGYRLY-DLARGVDERPVKP 237
Query: 340 ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R R IS+E T A L +AE L +Q++ + +++TLKLKT F + T
Sbjct: 238 DRERLQISTEITLPEDLSLAQAAGHLPHLAEDLWRQIQRKNVEAKSVTLKLKTHDFRIIT 297
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 440
R++T + S +L+ A L P + RLIGL V
Sbjct: 298 RSLTYSSVLPDSAALLRAAQTLAGRIPPQREDAFRLIGLGVAHL 341
>gi|408380616|ref|ZP_11178199.1| DNA polymerase IV [Agrobacterium albertimagni AOL15]
gi|407745470|gb|EKF57003.1| DNA polymerase IV [Agrobacterium albertimagni AOL15]
Length = 364
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 134/348 (38%), Positives = 191/348 (54%), Gaps = 14/348 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+GKP+AVG + ++ A+YEAR FGV +AMP A
Sbjct: 9 RKIIHVDMDAFYASVEQRDNPELRGKPLAVGGAAERGVVAAASYEARLFGVHSAMPSVTA 68
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ CP LIFV F Y S+ R +F +Y P SLDEAYLD+TE ++ I+ E
Sbjct: 69 ARKCPGLIFVKPRFDAYREVSEKIRAIFSEYTPIIEPLSLDEAYLDVTENLKDMPIA-TE 127
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA ++R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ TF+ L ++
Sbjct: 128 IALQIRARIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPRHGP--TFVEELAVK 185
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
K G+G T +R + GI T ++ K + FF + G+ R
Sbjct: 186 KFHGVGPATAEKMRRL-GIETGADLKAKSLTFLSQHFGKAGPFFYGIARGIDERPVRPDR 244
Query: 342 FRKSISSERTFSVTEDKALLYR---KLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
RKSI +E TF+ D + L +L +A+ + + + +GL G+TLTLK+K A F
Sbjct: 245 ERKSIGAEDTFAA--DISALQAASDELRPLAQKVWSSCRAKGLSGKTLTLKVKYADFTQV 302
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 444
TR+ T + ED+L+ A VLL P +RL+GL ++ DK
Sbjct: 303 TRSRTTSVPFAGVEDMLELAHVLLVGLHPFKRPVRLLGLTLSSLVIDK 350
>gi|52695703|pdb|1T94|A Chain A, Crystal Structure Of The Catalytic Core Of Human Dna
Polymerase Kappa
gi|52695704|pdb|1T94|B Chain B, Crystal Structure Of The Catalytic Core Of Human Dna
Polymerase Kappa
Length = 459
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 220 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 278
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 279 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 337
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 338 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 397
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 446
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 398 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDR 455
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/140 (57%), Positives = 104/140 (74%)
Query: 76 AKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG 135
A++TS + Q D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG
Sbjct: 5 AQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVG 64
Query: 136 TMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPN 195
+MSM+ T+NY ARRFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPN
Sbjct: 65 SMSMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPN 124
Query: 196 FMAASLDEAYLDITEVCRER 215
FMA SLDEAYL+IT+ ER
Sbjct: 125 FMAMSLDEAYLNITKHLEER 144
>gi|187478526|ref|YP_786550.1| DNA polymerase IV [Bordetella avium 197N]
gi|115423112|emb|CAJ49643.1| DNA polymerase IV [Bordetella avium 197N]
Length = 360
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 132/348 (37%), Positives = 196/348 (56%), Gaps = 18/348 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P L+G+P+ V G S++C A+YEARRFGV +AM A
Sbjct: 6 RKIVHIDMDAFYASVEQRDRPELRGQPVVVAWTGARSVVCAASYEARRFGVHSAMAVSRA 65
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
++LCP+ ++VP DF +Y S R++F ++ SLDEAYLD+T + G+ S
Sbjct: 66 QRLCPDAVYVPPDFNRYRAVSRQVREIFSRHTDLIEPLSLDEAYLDVT--VNKLGLPSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+AE +R + E GLT SAGVAPN+ LAK+ SD NKP+G FVL + V+ F+ LP+
Sbjct: 124 AVAEAIRAQIQRETGLTASAGVAPNKFLAKIASDWNKPDGLFVLRPAK--VLEFLQPLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFL---SVGLGLGSTNT 337
RK+ G+G+VT+ L + GI+T ++ + A H L + GL
Sbjct: 182 RKVPGVGRVTQARL-ESLGIHTVGDL---ATCAPAELEHHFGRHGLRLHELARGLDEREV 237
Query: 338 PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+ + +S+E TF A L L +A + +K+G GRT LKLKT F +
Sbjct: 238 QPDQPLQQVSAENTFERDLRLADLGEALDRLAARVWEQARKKGQLGRTAVLKLKTDRFRL 297
Query: 398 RTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LRLIGLRVTQFNE 442
TR++TL + SS+E++ A L + +LP RL G+ ++ F +
Sbjct: 298 LTRSLTLSQPPSSAEELAAIARRLCARVDLPAHTRYRLAGVGMSNFTD 345
>gi|242277745|ref|YP_002989874.1| DNA-directed DNA polymerase [Desulfovibrio salexigens DSM 2638]
gi|242120639|gb|ACS78335.1| DNA-directed DNA polymerase [Desulfovibrio salexigens DSM 2638]
Length = 389
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 192/345 (55%), Gaps = 9/345 (2%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGF 159
+ + +H+DMDAF+A+VE L NP L+GKP+ VG+M S++ A+YEAR+FGVR+AMP
Sbjct: 1 MQKYIMHIDMDAFFASVEQLDNPELRGKPVGVGSMHERSVLSAASYEARKFGVRSAMPVR 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
A KLCP+L V +Y S Y P AS+DEAY+DIT + G +
Sbjct: 61 QALKLCPQLQVVSGSRHRYKEISRKVMAALSNYSPIVEQASIDEAYIDITGTEKLFG-TP 119
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
++IA ++ + + GLT S G+AP + LAK+ SD+NKP+G ++ ++ V F+ +LP
Sbjct: 120 LQIARSIKADIRKATGLTASVGIAPVKFLAKIASDLNKPDGISIITAEQ--VQDFLKTLP 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+ KI G+GK LR +GI ++ + G G+ T +
Sbjct: 178 VEKIPGVGKKALPRLRS-YGITYAADLRRYPPEFWKERFGERGLVLYEKGAGIDPTPVTE 236
Query: 340 ARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
KS S+E TF D L L + +E ++AD++K G++GRT+TLK+K F
Sbjct: 237 GGAMKSSSAENTFGEDVSDIHTLKTLLLKQSERIAADIRKHGVKGRTVTLKVKFPDFRQI 296
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQFNE 442
TR+ TL S + I K A LL AELP+ +RLIG+ ++ F E
Sbjct: 297 TRSRTLDSRTSHAGTIYKTACSLLDAELPIGPIRLIGVGISNFEE 341
>gi|311105525|ref|YP_003978378.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
gi|310760214|gb|ADP15663.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
Length = 359
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 132/358 (36%), Positives = 197/358 (55%), Gaps = 20/358 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+GKP+ V G S++C A+YEARRFG+ +AM A
Sbjct: 5 RKIVHVDMDAFYASVEQRDNPDLRGKPVVVAWTGPRSVVCAASYEARRFGIHSAMSAARA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
+LCP I+VP DF +Y S R++F ++ SLDEAYLD+T + G+ S
Sbjct: 65 ERLCPHAIYVPPDFNRYRDVSRQVRQIFARHTDLIEPLSLDEAYLDVT--INKLGLPSAT 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+ +R + EE GLT SAGVAPN+ LAK+ SD NKP+G FV+ + V+ F+ LP+
Sbjct: 123 EVAQVIRHQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVVRPAK--VLAFLEPLPV 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
RK+ G+GKVT+ L + GI+T ++ + + + G+
Sbjct: 181 RKVPGVGKVTQARL-EQLGIHTVGDLATHSAQELEHYFGRYGRRLYELARGIDEREVQTD 239
Query: 341 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
+ + +SSE TFS + + +AE + K+G GRT+ LKLKT F + TR
Sbjct: 240 QPLQQVSSETTFSQDIRLDAVGEAIDRMAERVWDQALKKGALGRTVVLKLKTDRFRILTR 299
Query: 401 AVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNEDKVRAPSDPTQKT 455
+ T S+ ++ A +L + +LP RL G+ ++ F +DP ++T
Sbjct: 300 SQTSPGPPGSAAELAAVARLLCERVDLPPETLYRLAGVGMSNF--------ADPQEQT 349
>gi|261377452|ref|ZP_05982025.1| DNA-directed DNA polymerase [Neisseria cinerea ATCC 14685]
gi|269146178|gb|EEZ72596.1| DNA-directed DNA polymerase [Neisseria cinerea ATCC 14685]
Length = 352
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 195/345 (56%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHTVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCTALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|418936247|ref|ZP_13489976.1| DNA polymerase IV [Rhizobium sp. PDO1-076]
gi|375056985|gb|EHS53180.1| DNA polymerase IV [Rhizobium sp. PDO1-076]
Length = 359
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 127/347 (36%), Positives = 191/347 (55%), Gaps = 12/347 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+G+P+AVG ++ A+YEAR FGV +AMP A
Sbjct: 7 RKIIHVDMDAFYASVEQRDNPDLRGRPLAVGGSAARGVVAAASYEARTFGVHSAMPSVTA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
R+ CP+LIFVP F Y S R++F +Y P SLDEAYLD+TE + I+ E
Sbjct: 67 RRKCPDLIFVPPRFEVYRQVSQQIREIFAEYTPLIEPLSLDEAYLDVTENRKGMEIA-TE 125
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + F+ +LP+
Sbjct: 126 IALEIRAKIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPG---FVEALPV 182
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T ++ GI T ++ K + +F + G+
Sbjct: 183 KKFHGVGPATAERMKQ-HGIETGLDLKSKSLAFLQQHFGKSGPYFYGIARGIDERRVRPD 241
Query: 341 RFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TF D L + +L +AE + + + G+T+T+K+K + F T
Sbjct: 242 RIRKSVGAEDTFIEDIDNLDLAKAELRPMAEKVWRYCEAHDITGKTITVKIKYSDFSQAT 301
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 444
R+ T+ S + IL+ A LL + P +RL+G+ ++ N ++
Sbjct: 302 RSKTVAGSFSDIDMILEIAETLLASVFPFKHPVRLLGITLSSLNTEE 348
>gi|209547183|ref|YP_002279101.1| DNA polymerase IV [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209538427|gb|ACI58361.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 363
Score = 209 bits (531), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 190/343 (55%), Gaps = 12/343 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+GKP+AVG ++ A+YEAR+FGV +AMP A
Sbjct: 11 RKIVHVDMDAFYASVEQRDNPELRGKPIAVGGSAARGVVAAASYEARKFGVHSAMPSVTA 70
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CPELIFVP F Y S R++F +Y P SLDEAYLD+T + I+ E
Sbjct: 71 KRKCPELIFVPPRFDVYKAVSQQIREIFAEYTPLIEPLSLDEAYLDVTHNLKGMEIA-TE 129
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + E GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F+ +LP+
Sbjct: 130 IALEIRARIKEVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---FVEALPV 186
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T + + GI+T + +K + +F + G+
Sbjct: 187 KKFHGVGPATAERMHRL-GIDTGASLKEKSLEFLVEHFGKSGPYFYGIARGIDERQVKPN 245
Query: 341 RFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TFS R+ L + E + A + G+ +T+TLK+K A F T
Sbjct: 246 RVRKSVGAEDTFSQDLHTFEPAREGLQPLIEKVWAYCEANGIGAKTVTLKVKYADFNQIT 305
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
R+ T+ + + D+ + S+LL P +RL+G+ ++
Sbjct: 306 RSKTVPAPLPAIADLEEIISLLLVPIFPPRKGVRLLGVTLSSL 348
>gi|385852932|ref|YP_005899446.1| DNA polymerase IV [Neisseria meningitidis H44/76]
gi|416196178|ref|ZP_11618024.1| DNA polymerase IV [Neisseria meningitidis CU385]
gi|433465393|ref|ZP_20422874.1| impB/mucB/samB family protein [Neisseria meningitidis NM422]
gi|433490777|ref|ZP_20447897.1| impB/mucB/samB family protein [Neisseria meningitidis NM418]
gi|433505380|ref|ZP_20462318.1| impB/mucB/samB family protein [Neisseria meningitidis 9506]
gi|433507449|ref|ZP_20464355.1| impB/mucB/samB family protein [Neisseria meningitidis 9757]
gi|325140607|gb|EGC63127.1| DNA polymerase IV [Neisseria meningitidis CU385]
gi|325199936|gb|ADY95391.1| DNA polymerase IV [Neisseria meningitidis H44/76]
gi|432202592|gb|ELK58651.1| impB/mucB/samB family protein [Neisseria meningitidis NM422]
gi|432226697|gb|ELK82421.1| impB/mucB/samB family protein [Neisseria meningitidis NM418]
gi|432240672|gb|ELK96206.1| impB/mucB/samB family protein [Neisseria meningitidis 9506]
gi|432240723|gb|ELK96256.1| impB/mucB/samB family protein [Neisseria meningitidis 9757]
Length = 352
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 128/344 (37%), Positives = 194/344 (56%), Gaps = 18/344 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRV 437
+ TR +T + +L+ A +L+ P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLMARVSPQTEDAFRLIGIGV 338
>gi|433677041|ref|ZP_20509074.1| DNA polymerase IV [Xanthomonas translucens pv. translucens DSM
18974]
gi|430817838|emb|CCP39428.1| DNA polymerase IV [Xanthomonas translucens pv. translucens DSM
18974]
Length = 353
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 142/360 (39%), Positives = 204/360 (56%), Gaps = 42/360 (11%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +P+L+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIIHVDMDAFYASVEQRDDPALRGKPVVVAWRGMRSVVCAASYEARVFGIRSAMPALRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T E + E
Sbjct: 62 ERLCPDAIFVPPDFARYKAVSRQVREIFQRHTDLIEPLSLDEAYLDVTAPKGELA-TATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA+ +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+ P+ V F++ LP+
Sbjct: 121 IAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQ---VDAFLTPLPV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGL------- 330
K+ G+GKV + L ++ GI T ++ +H A+ F S GL
Sbjct: 178 SKVPGVGKVMQAKLAEL-GIVTVGDLR----------THGEAELEARFGSFGLRLYQRAR 226
Query: 331 GLGSTNTPQARFRKSISSERTFSVTEDKAL-----LYRKLAEIAEMLSADMQKEGLRGRT 385
G+ + +SISSE TF+ ED AL R LAE + +A + E + RT
Sbjct: 227 GIDQRPVEADQQVQSISSEDTFA--EDLALDALEPAIRLLAE--KTWTATRRTERI-ART 281
Query: 386 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LRLIGLRVTQFNE 442
+ LKLKTA F + TR+ T ++ S + + A L + +LP S RL+G+ + F+E
Sbjct: 282 VVLKLKTAQFRILTRSFTPEQPPDSLQALTDIALALRQRVDLPASTRYRLVGVGLAGFHE 341
>gi|260583597|ref|ZP_05851345.1| DNA polymerase IV [Granulicatella elegans ATCC 700633]
gi|260158223|gb|EEW93291.1| DNA polymerase IV [Granulicatella elegans ATCC 700633]
Length = 352
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 132/350 (37%), Positives = 198/350 (56%), Gaps = 22/350 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R LH+DMDAF+A+VE + +P L+GKP+ VG ++ T +YEAR FGVR+AMP
Sbjct: 2 RKILHIDMDAFFASVEQMDHPHLRGKPIIVGGKVNQRGVVATCSYEARAFGVRSAMPTSK 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A +LCP+ I VP +F +Y S R++F +Y P S+DEAYLD+TE + + + I
Sbjct: 62 AIRLCPKAIIVPPNFERYRQLSLQIREIFHRYTPLVEPMSIDEAYLDVTENSKNQTSATI 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA E++ ++Y+E GLTCS GV+ N+ LAK+ S KP G V+ D+ + FI +LP+
Sbjct: 122 -IAREIQEAIYKEVGLTCSVGVSFNKFLAKIASGQRKPAGITVI--DQESFPEFIKTLPV 178
Query: 281 RKIGGIGKVTE---HILRDVFG---INTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
K G+G+ T H + + G +N +E L K F + V G +
Sbjct: 179 EKFFGVGQATTKKLHQKKLLIGEDILNCSKEYLIK------YFGKQGEALYRQVR-GQSN 231
Query: 335 TNTPQARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 393
R RKS E T T D+ +L + + + +E +S ++K L +T+T+KLK +
Sbjct: 232 DQLTLYRERKSYGKEETLLEDTTDEDVLQKYIEQFSEQISKWLKKNKLAAKTITIKLKQS 291
Query: 394 SFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-PVSLRLIGLRVTQFNE 442
FE +TR+ TL+ Y+ S E + A LL + S+RLIGL V+QF +
Sbjct: 292 DFETKTRSKTLETYVQSKEKLEIEAYHLLMEQYNNESVRLIGLTVSQFEQ 341
>gi|402823561|ref|ZP_10872979.1| DNA polymerase IV [Sphingomonas sp. LH128]
gi|402262917|gb|EJU12862.1| DNA polymerase IV [Sphingomonas sp. LH128]
Length = 375
Score = 208 bits (530), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 130/346 (37%), Positives = 193/346 (55%), Gaps = 14/346 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PS++G P+AVG S ++ A+YEAR+FGVR+AMP A
Sbjct: 20 RKIIHVDMDAFYASVEQRDDPSIRGLPVAVGGSSGRGVVAAASYEARKFGVRSAMPSARA 79
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+L+F F Y S R +F Y P+ SLDEAYLD+T + G S
Sbjct: 80 VRLCPDLVFRKPRFEVYREVSQQIRAIFLDYTPHVEPLSLDEAYLDVTADLKGIG-SATR 138
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+E+R + + LT SAGV+ N+ LAK+ SD NKP+G V+ A F++ LP+R
Sbjct: 139 IAQEIRRRIKADTRLTASAGVSYNKFLAKLASDQNKPDGLCVIRPGEGA--QFVAGLPVR 196
Query: 282 KIGGIG-KVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+ G+G + E + R GI T ++ K + L A F S A++ G+
Sbjct: 197 RFHGVGPRGAEKMAR--LGIETGADLAGKDLAFLRANFG-SFAEYLFRAARGVDLRQVRA 253
Query: 340 ARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKS+ ERT F ED L + I + + +++ G RGRT+T+KL+ A F+
Sbjct: 254 DRPRKSVGGERTFFENIEDPVALRETMDHIVDTVWERIERSGARGRTVTMKLRYADFQTL 313
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 442
TRA +L +++ + LL+ LP+ +RL+GL ++ +
Sbjct: 314 TRARSLHHFVADKAEFSAIGHALLEDHLPLPQPIRLMGLTLSALEQ 359
>gi|424912575|ref|ZP_18335952.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392848606|gb|EJB01129.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 365
Score = 208 bits (530), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 192/347 (55%), Gaps = 12/347 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA---NYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+GKP+AVG + +YEAR FGVR+AMP A
Sbjct: 10 RKIIHVDMDAFYASVEQRDNPELRGKPLAVGGAAARGVVAAASYEAREFGVRSAMPSVTA 69
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ CP+LIFV F Y S R++F +Y P SLDEAYLD+TE ++ I+ E
Sbjct: 70 ARKCPDLIFVKPRFEVYRAVSQQIREIFAEYTPLIEPLSLDEAYLDVTENLKDMPIA-TE 128
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F+ L +
Sbjct: 129 IALEIRARIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---FVEQLAV 185
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T + + GI T ++ K + +F + G+
Sbjct: 186 KKFHGVGPATAEKMHRL-GIETGADLKAKSLPFLVEHFGKSGPYFYGIARGIDERQVRPD 244
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TF+ +D L R+L +AE + + + +G G+T+T+K+K + F T
Sbjct: 245 RVRKSVGAEDTFTADIDDLELATRELRPLAEKVWSYCEAKGFSGKTVTVKIKYSDFTQAT 304
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 444
R+ T S++EDIL A+ LL P +RL+G+ ++ DK
Sbjct: 305 RSRTTAIPYSNAEDILDAANTLLAGVYPFKRPVRLLGVTLSSLTNDK 351
>gi|421538412|ref|ZP_15984588.1| DNA polymerase IV [Neisseria meningitidis 93003]
gi|402316439|gb|EJU51984.1| DNA polymerase IV [Neisseria meningitidis 93003]
Length = 352
Score = 208 bits (530), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 194/345 (56%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ +G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFDRGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFRLIGIGV 338
>gi|71756015|ref|XP_828922.1| DNA polymerase kappa [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834308|gb|EAN79810.1| DNA polymerase kappa, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 497
Score = 208 bits (530), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 126/358 (35%), Positives = 197/358 (55%), Gaps = 19/358 (5%)
Query: 96 ELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAA 155
ELEATR L +++H+DMD FYAAVE +P P+A+GT++ + T NY AR G+R
Sbjct: 50 ELEATRRLG-TYIHLDMDMFYAAVEIKKHPEYAAIPLAIGTITRLITTNYVARGRGIRQG 108
Query: 156 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE-VCRE 214
MPGF+A K+CP L+ +P DF Y S+ R++ +YDPN+++ LD+ L+++ + R
Sbjct: 109 MPGFLALKICPNLLILPPDFDAYNEESNTVRRIVAEYDPNYISFGLDDFTLEVSAYIERF 168
Query: 215 RGISGIE-IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVM 272
G E +A ELR V+ E LT SAG+ P LAK+ S+INKPNGQ L + R VM
Sbjct: 169 EGTKTAEDVASELRVRVFGETKLTASAGIGPTAALAKIASNINKPNGQHDLNLHTRGDVM 228
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
T++ L +R + G+GKVTE +L+ + GI T ++ + LC + ++ F L +G+
Sbjct: 229 TYVRDLGLRSVPGVGKVTEALLKGL-GITTLSDIYNRRVELCYILHNNLFRFLLGASIGI 287
Query: 333 -------GSTNT-----PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEG 380
+ NT RK+ISSER+ + K + L + +M+K
Sbjct: 288 MQWPDAATAANTENCEGATGEQRKAISSERSITTPRTKEGMQEMLDTVFNGAYEEMRKSE 347
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGLR 436
L R ++L+++ AS+ + +L +Y S + + LL A + L+G+R
Sbjct: 348 LMCRRISLRIRWASYRYQQYTKSLIQYSDDSATLRRAVDGLLLPHAAKYSEISLLGVR 405
>gi|365857221|ref|ZP_09397216.1| putative DNA polymerase IV [Acetobacteraceae bacterium AT-5844]
gi|363716526|gb|EHL99927.1| putative DNA polymerase IV [Acetobacteraceae bacterium AT-5844]
Length = 364
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 142/375 (37%), Positives = 200/375 (53%), Gaps = 30/375 (8%)
Query: 99 ATRDLS---RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGV 152
AT DL R +HVDMDAFYA+VE NP L+G P+AVG ++ A+YEAR+FGV
Sbjct: 2 ATNDLPPVVRRIIHVDMDAFYASVEQRDNPELRGIPLAVGGSRARGVVAAASYEARKFGV 61
Query: 153 RAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVC 212
+AMP AR+ CPEL+FV F Y S +F +Y SLDEAYLD+TE
Sbjct: 62 HSAMPSVTARRKCPELVFVKPRFDVYRAVSRQIHDIFARYTTLIQPLSLDEAYLDVTEPL 121
Query: 213 RERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVM 272
+RG S IAEE+R ++ E GLT SAGV+ N+ LAK+ SD KP+G FV+ RM
Sbjct: 122 LDRG-SATAIAEEIRAAIRAETGLTASAGVSYNKFLAKMASDHRKPDGLFVI-TPRMG-P 178
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F+ +L I K G+G T + + GI+ ++ Q+ D++ +V G+
Sbjct: 179 AFVETLAIGKFHGVGPATAAKM-NRLGIHNGHDLRQQTREFLQHHFGKAGDYYFNVARGV 237
Query: 333 GSTNTPQARFRKSISSERTFS----VTEDK----ALLYRKLAEIAEMLSADMQKEGLRGR 384
+ R RKS+ +E TF V ED A L+ K+ EI + K G GR
Sbjct: 238 DNRPVNPDRTRKSVGAETTFERDLIVWEDAVPAMAPLFSKVWEI-------VAKSGRGGR 290
Query: 385 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 442
T+T+K+K A F TR+ + ++S E + LL+ P +RL+G+ ++ F++
Sbjct: 291 TVTVKVKYADFRQITRSRSCAPPLASLEMFEEIGLELLRPVFPAPEGVRLLGVTISNFDD 350
Query: 443 DKVRAPSDPTQKTLT 457
D S P Q LT
Sbjct: 351 DTR---SHPAQLALT 362
>gi|357418538|ref|YP_004931558.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
gi|355336116|gb|AER57517.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
Length = 366
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 133/353 (37%), Positives = 193/353 (54%), Gaps = 28/353 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R LH+DMDAFYA+VE +P+L+GKP+ VG + ++C A+YEAR++GVR+AMPG A
Sbjct: 2 RKILHIDMDAFYASVEQRDDPALRGKPVVVGGSAPRGVVCAASYEARKYGVRSAMPGVTA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
R+LCP+ IFV DF +Y S R++F + SLDEAYLD+T R S
Sbjct: 62 RRLCPQAIFVAPDFARYRAVSRQIREIFLAHTDLVEPLSLDEAYLDVT-APRIASSSATA 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
A+ +R ++E GLT SAG+APN+ LAK+ SD NKPNGQ+V+ + V F++ L +
Sbjct: 121 TAQAIRAQIFETTGLTASAGIAPNKFLAKIASDWNKPNGQYVIKPAQ--VEAFLTPLKVG 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM---------LQKGSLLCAVFSHSTADFFLSVGLGL 332
+I G+GKV E L ++ G+ T ++ L+ G A++ + G+
Sbjct: 179 RIPGVGKVAERKLAEL-GVATVGDLRRFTLDELQLRFGRFGAALYRRAR---------GI 228
Query: 333 GSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
+ +SIS+E TF V A L +A +A+ K G T+ LKLKT
Sbjct: 229 DERPVQPDQQVQSISAEDTFEVDLPLAELGPAIARMADKAWRATGKTARIGHTVVLKLKT 288
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 442
A F + TR+ T + SS A L + +LPV RL+G+ + F E
Sbjct: 289 AQFRILTRSFTPEAPPSSLAQFTAIALALRDRVDLPVDTRYRLVGVGLAGFRE 341
>gi|390944951|ref|YP_006408712.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Belliella baltica DSM 15883]
gi|390418379|gb|AFL85957.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Belliella baltica DSM 15883]
Length = 360
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 137/350 (39%), Positives = 200/350 (57%), Gaps = 16/350 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE L NP L GKP+AVG ++ A+YEAR+FGVR+AM G +A
Sbjct: 5 RKIIHVDMDAFYASVEQLDNPDLIGKPVAVGGNRERGVVAAASYEARKFGVRSAMSGKMA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
CP LIFV F +Y S R++F +Y SLDEA+LD+TE E S
Sbjct: 65 ALKCPHLIFVRPRFERYKEISLQIREIFFEYTDLVEPLSLDEAFLDVTENKFENP-SATL 123
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPI 280
+A+E+R + + GL SAG++ N+ LAK+ SDINKPNGQ +LP + A F+ LPI
Sbjct: 124 LAKEIRAKIKSQTGLNASAGISYNKFLAKIASDINKPNGQAVILPKEAEA---FLEKLPI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K GIGKVT ++ FGI+ +++ + L F S F+ ++ G+ +
Sbjct: 181 EKFFGIGKVTAEKMKK-FGIHQGKDLKEYSLQFLTKKFGKSGLHFY-NIVRGIHMSEVQP 238
Query: 340 ARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKSIS+E TF + + + L + E L ++K ++GRT+TLK+K F ++
Sbjct: 239 NRERKSISAENTFEKDLPTQVEWEEALKGVFEELMRRIEKTRIKGRTITLKIKYKDFTLQ 298
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN--EDKV 445
TR+ + +Y E I + LL E L ++RL G+ ++ N E+K+
Sbjct: 299 TRSKSFDQY-PDKEKIWETVLELLNQERLTDAVRLFGIGISNLNLLEEKI 347
>gi|222149470|ref|YP_002550427.1| DNA polymerase IV [Agrobacterium vitis S4]
gi|221736453|gb|ACM37416.1| DNA-damage-inducible protein [Agrobacterium vitis S4]
Length = 385
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 125/347 (36%), Positives = 190/347 (54%), Gaps = 12/347 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE P L GKP+AVG ++ A+YEAR FGV +AMP A
Sbjct: 33 RKIIHVDMDAFYASVEQRDKPELLGKPVAVGGSAARGVVAAASYEARAFGVHSAMPSVTA 92
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFVP F Y S R++F +Y P SLDEAYLD+TE + I+ E
Sbjct: 93 KRKCPDLIFVPPRFDVYRQVSHQIREIFAEYTPLIEPLSLDEAYLDVTENLKGMEIA-TE 151
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + F+ +LP+
Sbjct: 152 IALEIRAKIKAATGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPG---FVEALPV 208
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
++ G+G T ++ GI T ++ K + +F + G+
Sbjct: 209 KRFHGVGPATAERMQR-HGIETGLDLKSKSLQFLQTHFGKSGSYFYGIARGIDERQVRAD 267
Query: 341 RFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TF D R +L +AE + + ++G+T+T+K+K + F T
Sbjct: 268 RIRKSVGAEDTFVEDIDDLDPARAELRPLAEKVWRYCESHDIKGKTITVKIKYSDFSQAT 327
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 444
R+ T+ Y+S + I+ A LL + P +RL+G+ ++ N ++
Sbjct: 328 RSKTVAGYVSDIDMIMGIAEPLLASVFPFKHPVRLLGITLSSLNTEE 374
>gi|418517734|ref|ZP_13083893.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|410705578|gb|EKQ64049.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 359
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 196/347 (56%), Gaps = 16/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARIFGIRSAMPAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T + G+
Sbjct: 62 ERLCPDAIFVPPDFARYKAVSRQVREIFHRHTELVEPLSLDEAYLDVTHA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F+ L +
Sbjct: 120 EVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAFLLPLKV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+I G+GKV + L GI T ++ Q+ S G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDERPVEPD 236
Query: 341 RFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 237 QEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRIL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 442
TR+ T ++ +S E + + A L + ELP RL+G+ + F++
Sbjct: 295 TRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGFSD 341
>gi|294948988|ref|XP_002785996.1| DNA polymerase IV, putative [Perkinsus marinus ATCC 50983]
gi|239900104|gb|EER17792.1| DNA polymerase IV, putative [Perkinsus marinus ATCC 50983]
Length = 585
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 147/403 (36%), Positives = 213/403 (52%), Gaps = 51/403 (12%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPE-- 167
+DMD FYAAVE +PSL P+AVG +MI TANY AR++GVRAAMPGFIAR+LC
Sbjct: 18 IDMDMFYAAVEIRDDPSLHDVPLAVGGDAMISTANYVARKYGVRAAMPGFIARELCRRQG 77
Query: 168 ------------------LIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDIT 209
L F P D +Y S + + Y P M SLDEAY+DIT
Sbjct: 78 VELRLEGPSGVVVMMEGGLRFKPVDMPRYQAASKIFKDTVSLYGPMKM-LSLDEAYIDIT 136
Query: 210 EVCRERG-----ISGIEIAEELRTSVYEE-----AGLTCSAGVAPNRL-LAKVCSDINKP 258
E IS +E A L + + EE +GLTCSAG+A LAK+ SD+NKP
Sbjct: 137 AKVAEAAMVDESISEVEAASLLVSRMREEVCEKSSGLTCSAGIARGCFRLAKMASDVNKP 196
Query: 259 NGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFS 318
NGQF++P ++ ++ S+PIRK+ G+G+V+E L GI+ +++ K + L S
Sbjct: 197 NGQFMVPTTTQGMLEWLHSMPIRKLHGVGRVSERELSAGLGIHKVGDIIIKAAELLHAMS 256
Query: 319 HSTADFFLSVGLGLGSTNTPQARFR---KSISSERTFSVTEDKALLYRKLAEIAEMLSAD 375
S + + +G+ A KSIS ER+ S + + Y L E+ E L +
Sbjct: 257 SSGGHWLIDAAMGVTDMEDVTAAAESGPKSISQERSLSTAKSGSAAY--LHEVLEELCSQ 314
Query: 376 M-----QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK---AELP 427
+ +KE GR +T+KLKT ++V+ ++ TL++ + S + + AS L+ A L
Sbjct: 315 VMELCAEKEQY-GRCVTVKLKTFEWDVKQKSNTLKREVRSGRLLYEAASELMSTALATLK 373
Query: 428 VSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIV 470
+RL+G+RV+ F + P Q TL +F+ + AS V
Sbjct: 374 KPIRLLGVRVSSF---QTAVPQG--QSTLGDFLAAHKASSSRV 411
>gi|418520920|ref|ZP_13086967.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410703343|gb|EKQ61837.1| DNA polymerase IV [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
Length = 359
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 196/347 (56%), Gaps = 16/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARIFGIRSAMPAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T + G+
Sbjct: 62 ERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F+ L +
Sbjct: 120 EVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAFLLPLKV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+I G+GKV + L GI T ++ Q+ S G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDERPVEPD 236
Query: 341 RFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 237 QEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRIL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 442
TR+ T ++ +S E + + A L + ELP RL+G+ + F++
Sbjct: 295 TRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGFSD 341
>gi|260909969|ref|ZP_05916656.1| DNA-directed DNA polymerase IV [Prevotella sp. oral taxon 472 str.
F0295]
gi|260635919|gb|EEX53922.1| DNA-directed DNA polymerase IV [Prevotella sp. oral taxon 472 str.
F0295]
Length = 365
Score = 208 bits (529), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 131/359 (36%), Positives = 199/359 (55%), Gaps = 22/359 (6%)
Query: 100 TRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAM 156
+D +R +H+DMDAFYA+VE +PSL+GKP+ +G+ ++CTA+YEAR++GV +AM
Sbjct: 3 AQDFNRKIIHIDMDAFYASVEQRDDPSLRGKPVGIGSEDKRGVLCTASYEARKYGVHSAM 62
Query: 157 PGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERG 216
G A+++CPELI +P +F KY S +++F +Y SLDEAYLD+T+ ++G
Sbjct: 63 SGVQAKRMCPELILIPPNFKKYKQVSQQVQEIFHRYTDIVEPLSLDEAYLDVTQ--NKQG 120
Query: 217 IS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
I ++IA+ ++ +Y+E LT SAGV+ N+ LAKV SD KPNG V+ R M FI
Sbjct: 121 IELAVDIAKRIKQEIYDELHLTASAGVSFNKFLAKVASDFRKPNGITVIHPSR--AMQFI 178
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPI G+G T + + N + L VF + ++ + +
Sbjct: 179 DKLPITDFWGVGHKTAETMHAMGIFNGADLRQLSRLRLRQVFGKAGETYY-NFARAIDPR 237
Query: 336 NTPQARFRKSISSERTF---SVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKL 390
RKS+ ERTF S + L LYR + E+ E L ++ +GRTLTLK+
Sbjct: 238 PVEPHWVRKSVGCERTFEEDSSNPNVLLTELYRLVLELVERL----KRNDFKGRTLTLKV 293
Query: 391 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRVTQFNEDKVR 446
K F TR+ T + E+IL A LL +++ S +RL+G++V+ N+ R
Sbjct: 294 KFHDFTQITRSRTALHILRKKEEILPIAKALL-SDVDYSSHPIRLLGVQVSNINDGPHR 351
>gi|443243201|ref|YP_007376426.1| DNA polymerase IV, damage-inducible protein [Nonlabens dokdonensis
DSW-6]
gi|442800600|gb|AGC76405.1| DNA polymerase IV, damage-inducible protein [Nonlabens dokdonensis
DSW-6]
Length = 349
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 130/340 (38%), Positives = 199/340 (58%), Gaps = 13/340 (3%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE +P L+GKP+AVG S ++ A+YEAR++GVR+AMP A++LCP+L
Sbjct: 1 MDAFYASVEQHDDPDLRGKPIAVGGGSDRGVVAAASYEARKYGVRSAMPSVTAKRLCPDL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFV + F +Y S R++F Y SLDEAYLD+TE + + I IA E+R
Sbjct: 61 IFVKSRFDRYREVSAQIREIFHDYTDLVEPLSLDEAYLDVTENKYDFPSATI-IAYEIRR 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPIRKIGGIG 287
+YE G+T SAG++ N+ +AK+ SD NKPNGQ ++P + + + + RK GIG
Sbjct: 120 RIYETTGITASAGISVNKFIAKIASDYNKPNGQKTIVPEEIIEFLEELEI---RKFHGIG 176
Query: 288 KVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSI 346
KVT + FGI T +++ +K L F S + ++ + G+ + R RKS+
Sbjct: 177 KVTAEKMYQ-FGIFTGKDLKRKSLEFLVENFGKSGSHYY-KIVRGIHKSPVKPDRIRKSL 234
Query: 347 SSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQ 405
+ERTFS + + +L +IAE + + K + G+T+TLK+K F+ +TR+ TL
Sbjct: 235 GAERTFSENISSEVFMKERLIQIAEEIEKRIAKSDVSGKTVTLKIKYRDFKTQTRSKTLP 294
Query: 406 KYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDK 444
+I + IL A L++ E S+RL+G+ ++ N K
Sbjct: 295 YFIRDKQTILNTAIELMEQESFRESVRLLGITLSNLNTGK 334
>gi|359797341|ref|ZP_09299927.1| DNA polymerase IV [Achromobacter arsenitoxydans SY8]
gi|359364842|gb|EHK66553.1| DNA polymerase IV [Achromobacter arsenitoxydans SY8]
Length = 365
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/310 (40%), Positives = 175/310 (56%), Gaps = 10/310 (3%)
Query: 98 EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRA 154
E TR R +HVDMDAFYA+VE NP L+GKP+ V G S++C A+YEARRFG+ +
Sbjct: 5 ETTRS-PRKIVHVDMDAFYASVEQRDNPELRGKPVVVAWTGPRSVVCAASYEARRFGIHS 63
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A +LCP I+VP DF +Y S R++F ++ SLDEAYLD+T V +
Sbjct: 64 AMSAIKAERLCPHAIYVPPDFNRYRDVSRQVRQIFARHTDLIEPLSLDEAYLDVT-VNKC 122
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMT 273
S E+A+ +R + EE GLT SAGVAPN+ LAK+ SD NKP+G FV+ PN V+
Sbjct: 123 GLPSATEVAQVIRQQIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVVRPNK---VLA 179
Query: 274 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 333
F+ LP+RK+ G+GKVT+ L + GI T ++ + + + G+
Sbjct: 180 FLEPLPVRKVPGVGKVTQARL-EQLGIQTVGDLATHSAQELEHYFGRYGRRLYELARGID 238
Query: 334 STNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 393
+ + +S+E TFS + + +AE + K+G GRT+ LKLKT
Sbjct: 239 EREVQPDQPLQQVSAETTFSRDVRLDAVGEAIDRMAEKVWDQALKKGALGRTVVLKLKTD 298
Query: 394 SFEVRTRAVT 403
F + TR+ T
Sbjct: 299 RFRILTRSQT 308
>gi|385323903|ref|YP_005878342.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis 8013]
gi|385328701|ref|YP_005883004.1| DNA-damage-inducible protein P [Neisseria meningitidis alpha710]
gi|385850975|ref|YP_005897490.1| DNA polymerase IV [Neisseria meningitidis M04-240196]
gi|416169881|ref|ZP_11608241.1| DNA polymerase IV [Neisseria meningitidis OX99.30304]
gi|416182644|ref|ZP_11612119.1| DNA polymerase IV [Neisseria meningitidis M13399]
gi|416187280|ref|ZP_11614150.1| DNA polymerase IV [Neisseria meningitidis M0579]
gi|416212875|ref|ZP_11622033.1| DNA polymerase IV [Neisseria meningitidis M01-240013]
gi|421551063|ref|ZP_15997063.1| DNA polymerase IV [Neisseria meningitidis 69166]
gi|421555045|ref|ZP_16000984.1| DNA polymerase IV [Neisseria meningitidis 98008]
gi|421556829|ref|ZP_16002739.1| DNA polymerase IV [Neisseria meningitidis 80179]
gi|421561526|ref|ZP_16007368.1| impB/mucB/samB family protein [Neisseria meningitidis NM2657]
gi|433471763|ref|ZP_20429146.1| impB/mucB/samB family protein [Neisseria meningitidis 68094]
gi|433477892|ref|ZP_20435210.1| impB/mucB/samB family protein [Neisseria meningitidis 70012]
gi|433488729|ref|ZP_20445887.1| impB/mucB/samB family protein [Neisseria meningitidis M13255]
gi|433509644|ref|ZP_20466510.1| impB/mucB/samB family protein [Neisseria meningitidis 12888]
gi|433511655|ref|ZP_20468478.1| impB/mucB/samB family protein [Neisseria meningitidis 4119]
gi|433522170|ref|ZP_20478857.1| impB/mucB/samB family protein [Neisseria meningitidis 61103]
gi|433526276|ref|ZP_20482906.1| impB/mucB/samB family protein [Neisseria meningitidis 69096]
gi|433539224|ref|ZP_20495699.1| impB/mucB/samB family protein [Neisseria meningitidis 70030]
gi|261392290|emb|CAX49816.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis 8013]
gi|308389553|gb|ADO31873.1| DNA-damage-inducible protein P [Neisseria meningitidis alpha710]
gi|325130510|gb|EGC53265.1| DNA polymerase IV [Neisseria meningitidis OX99.30304]
gi|325134571|gb|EGC57215.1| DNA polymerase IV [Neisseria meningitidis M13399]
gi|325136508|gb|EGC59112.1| DNA polymerase IV [Neisseria meningitidis M0579]
gi|325144732|gb|EGC67027.1| DNA polymerase IV [Neisseria meningitidis M01-240013]
gi|325205798|gb|ADZ01251.1| DNA polymerase IV [Neisseria meningitidis M04-240196]
gi|389605414|emb|CCA44332.1| DNA polymerase IV [Neisseria meningitidis alpha522]
gi|402328597|gb|EJU63964.1| DNA polymerase IV [Neisseria meningitidis 69166]
gi|402332198|gb|EJU67529.1| DNA polymerase IV [Neisseria meningitidis 98008]
gi|402336083|gb|EJU71345.1| DNA polymerase IV [Neisseria meningitidis 80179]
gi|402337822|gb|EJU73068.1| impB/mucB/samB family protein [Neisseria meningitidis NM2657]
gi|432207720|gb|ELK63708.1| impB/mucB/samB family protein [Neisseria meningitidis 68094]
gi|432214708|gb|ELK70604.1| impB/mucB/samB family protein [Neisseria meningitidis 70012]
gi|432222595|gb|ELK78386.1| impB/mucB/samB family protein [Neisseria meningitidis M13255]
gi|432246145|gb|ELL01602.1| impB/mucB/samB family protein [Neisseria meningitidis 12888]
gi|432246416|gb|ELL01864.1| impB/mucB/samB family protein [Neisseria meningitidis 4119]
gi|432258548|gb|ELL13830.1| impB/mucB/samB family protein [Neisseria meningitidis 61103]
gi|432261040|gb|ELL16297.1| impB/mucB/samB family protein [Neisseria meningitidis 69096]
gi|432272947|gb|ELL28049.1| impB/mucB/samB family protein [Neisseria meningitidis 70030]
Length = 352
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 195/345 (56%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|255068100|ref|ZP_05319955.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|340362974|ref|ZP_08685331.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|349610910|ref|ZP_08890230.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
gi|255047615|gb|EET43079.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|339886785|gb|EGQ76409.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|348615332|gb|EGY64854.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
Length = 352
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 193/346 (55%), Gaps = 18/346 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LKG P+ V G S+IC A+YEAR+FG+ +AM A
Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGLPVVVAWEGARSVICAASYEARQFGLHSAMSVATA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + + E
Sbjct: 64 KRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTHNFKNIPYAS-E 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPLG 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 181 KIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERPV 235
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R+ + ++ ED +L L +AE L + ++ + + +TLKLKT F +
Sbjct: 236 KAERERLQISTEITLPEDLSLEQAAGHLPHLAEDLWRQIARKNVEAKGVTLKLKTHDFRI 295
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 440
TR++T + ++ +L A L++ P + RLIG+ V
Sbjct: 296 ITRSLTYSSVLPDTDALLCAAQTLMQRVPPQREDAFRLIGIGVNHL 341
>gi|406892189|gb|EKD37611.1| hypothetical protein ACD_75C01070G0002 [uncultured bacterium]
Length = 370
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 134/348 (38%), Positives = 196/348 (56%), Gaps = 13/348 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMDAF+A++E N SLKGKP+ VG + ++ +YEARRFG+ +AMP
Sbjct: 5 RKIIHIDMDAFFASIEQKDNGSLKGKPLIVGGSPQSRGVVAACSYEARRFGIHSAMPCAK 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A +LCP IFV ++Y S ++F +Y P SLDEAYLD+T V S
Sbjct: 65 AARLCPNAIFVRPRMSRYKEISVKIMEIFHQYTPLVEPLSLDEAYLDVT-VNNSNNPSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+AE++R ++ E LT SAGV+ N+ LAKV SDINKPNG +P D+ + F++SLPI
Sbjct: 124 LLAEKIRRHIFRELQLTASAGVSFNKFLAKVASDINKPNGITTIPPDK--ALEFLASLPI 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
RK G+GK TE + + GI T E+ Q + L F FF + G+ +
Sbjct: 182 RKFHGVGKATERKMHQL-GITTGYELRQWREDQLIRHFG-KYGSFFHDIVRGIDNRPVEP 239
Query: 340 ARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKSI E T + T+D + LA++AE L + K + G LTLK++ F
Sbjct: 240 QRIRKSIGCETTLATDTDDIGTINAILADLAEELDHSLGKRRIGGYNLTLKVRYLDFITI 299
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNEDK 444
+R++T++ + +S DIL LL A S +RL+GL +++ ++K
Sbjct: 300 SRSITVKTPLFTSADILPLLPTLLHATAAGSRKIRLLGLSLSKLVDEK 347
>gi|440224781|ref|YP_007338177.1| DNA polymerase IV (Pol IV) [Rhizobium tropici CIAT 899]
gi|440043653|gb|AGB75631.1| DNA polymerase IV (Pol IV) [Rhizobium tropici CIAT 899]
Length = 371
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 197/362 (54%), Gaps = 13/362 (3%)
Query: 98 EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRA 154
+A +L R +HVDMDAFYA+VE NP L+GKP+AVG ++ A+YEAR FGV +
Sbjct: 9 DANANLVRKIIHVDMDAFYASVEQRDNPELRGKPLAVGGSAARGVVAAASYEARAFGVHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AMP A++ CP LIFVP F Y S R++F +Y SLDEAYLD+T+ +
Sbjct: 69 AMPSVTAKRKCPNLIFVPPRFDVYRAVSQQIREIFAEYTSMIEPLSLDEAYLDVTQNHKG 128
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMT 273
I+ EIA E+RT + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A
Sbjct: 129 MEIA-TEIALEIRTRIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA--- 184
Query: 274 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 333
F+ +LP++K G+G T + +GI T ++ K +F + G+
Sbjct: 185 FVETLPVKKFHGVGPATAERMHK-YGIETGLDLKSKSLAFLQEHFGKAGPYFYGIARGID 243
Query: 334 STNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
R RKSI +E TF +D L +L +A+ + + G +T+T+K+K
Sbjct: 244 ERQVKPDRIRKSIGAEDTFVEDIDDLELATAELRPLAQKVWRYCETGGFSAKTVTVKIKY 303
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF-NEDKVRAPS 449
+ F TR+ T ++ + +L+ A+ LL P + +RL+G+ ++ NE+ S
Sbjct: 304 SDFTQATRSRTSSLPVADAGAVLETAAALLATVHPFARPIRLLGITLSSLTNEEADDGRS 363
Query: 450 DP 451
P
Sbjct: 364 QP 365
>gi|170759086|ref|YP_001788136.1| DNA polymerase IV [Clostridium botulinum A3 str. Loch Maree]
gi|169406075|gb|ACA54486.1| DNA polymerase IV [Clostridium botulinum A3 str. Loch Maree]
Length = 349
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 197/350 (56%), Gaps = 14/350 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE + N LKGKP+ VG + ++ TA+YEAR++GV +AMP F
Sbjct: 1 MDRVIIHVDMDAFFASVEQMDNKKLKGKPVIVGGIGERGVVSTASYEARKYGVHSAMPVF 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
IA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 61 IAKKRCPFGIYVPGRHERYKEVSNSIFKILYKITPIIEPVSIDEAYLDITNIKEE----S 116
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
I++AE ++ V +E GLT S G++ N+ LAK+ S+ NKP+G ++ D + + + LP
Sbjct: 117 IKVAEHIKKRVKDEMGLTLSVGISYNKFLAKLASEWNKPDGIKIIRQDMIP--SILMPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGSTNTP 338
I KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 175 INKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDYREVK 232
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKSI E T DK + + L + + +S ++ K G+T+T+K+KT++F+
Sbjct: 233 VSRERKSIGKEITLKKDITDKEEMKKYLLDFSNKVSTNLYKRNSGGKTVTVKIKTSNFQT 292
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 446
TR+ T+ YI ++I A +L +RLIGL V+ E+K++
Sbjct: 293 HTRSKTVDDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGENKIK 342
>gi|121635137|ref|YP_975382.1| DNA polymerase IV [Neisseria meningitidis FAM18]
gi|385340339|ref|YP_005894211.1| DNA polymerase IV [Neisseria meningitidis G2136]
gi|416178473|ref|ZP_11610615.1| DNA polymerase IV [Neisseria meningitidis M6190]
gi|416192460|ref|ZP_11616642.1| DNA polymerase IV [Neisseria meningitidis ES14902]
gi|416203316|ref|ZP_11620044.1| DNA polymerase IV [Neisseria meningitidis 961-5945]
gi|421542743|ref|ZP_15988849.1| DNA polymerase IV [Neisseria meningitidis NM255]
gi|433467593|ref|ZP_20425047.1| impB/mucB/samB family protein [Neisseria meningitidis 87255]
gi|433492845|ref|ZP_20449935.1| impB/mucB/samB family protein [Neisseria meningitidis NM586]
gi|433494972|ref|ZP_20452039.1| impB/mucB/samB family protein [Neisseria meningitidis NM762]
gi|433497141|ref|ZP_20454176.1| impB/mucB/samB family protein [Neisseria meningitidis M7089]
gi|433499204|ref|ZP_20456211.1| impB/mucB/samB family protein [Neisseria meningitidis M7124]
gi|433501175|ref|ZP_20458160.1| impB/mucB/samB family protein [Neisseria meningitidis NM174]
gi|433503328|ref|ZP_20460288.1| impB/mucB/samB family protein [Neisseria meningitidis NM126]
gi|189027672|sp|A1KUQ3.1|DPO4_NEIMF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|120866843|emb|CAM10601.1| impB/mucB/samB family protein [Neisseria meningitidis FAM18]
gi|325132193|gb|EGC54889.1| DNA polymerase IV [Neisseria meningitidis M6190]
gi|325138126|gb|EGC60699.1| DNA polymerase IV [Neisseria meningitidis ES14902]
gi|325142626|gb|EGC65017.1| DNA polymerase IV [Neisseria meningitidis 961-5945]
gi|325198583|gb|ADY94039.1| DNA polymerase IV [Neisseria meningitidis G2136]
gi|402316662|gb|EJU52204.1| DNA polymerase IV [Neisseria meningitidis NM255]
gi|432202427|gb|ELK58491.1| impB/mucB/samB family protein [Neisseria meningitidis 87255]
gi|432227708|gb|ELK83416.1| impB/mucB/samB family protein [Neisseria meningitidis NM586]
gi|432229620|gb|ELK85305.1| impB/mucB/samB family protein [Neisseria meningitidis NM762]
gi|432233226|gb|ELK88858.1| impB/mucB/samB family protein [Neisseria meningitidis M7089]
gi|432233631|gb|ELK89257.1| impB/mucB/samB family protein [Neisseria meningitidis M7124]
gi|432235148|gb|ELK90765.1| impB/mucB/samB family protein [Neisseria meningitidis NM174]
gi|432239638|gb|ELK95186.1| impB/mucB/samB family protein [Neisseria meningitidis NM126]
Length = 352
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 195/345 (56%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFRLIGIGV 338
>gi|421544771|ref|ZP_15990844.1| DNA polymerase IV [Neisseria meningitidis NM140]
gi|421546859|ref|ZP_15992901.1| DNA polymerase IV [Neisseria meningitidis NM183]
gi|421549106|ref|ZP_15995128.1| DNA polymerase IV [Neisseria meningitidis NM2781]
gi|421553074|ref|ZP_15999043.1| DNA polymerase IV [Neisseria meningitidis NM576]
gi|421559533|ref|ZP_16005406.1| DNA polymerase IV [Neisseria meningitidis 92045]
gi|433537101|ref|ZP_20493603.1| impB/mucB/samB family protein [Neisseria meningitidis 77221]
gi|402322503|gb|EJU57961.1| DNA polymerase IV [Neisseria meningitidis NM183]
gi|402322684|gb|EJU58135.1| DNA polymerase IV [Neisseria meningitidis NM140]
gi|402324927|gb|EJU60349.1| DNA polymerase IV [Neisseria meningitidis NM2781]
gi|402329587|gb|EJU64947.1| DNA polymerase IV [Neisseria meningitidis NM576]
gi|402335332|gb|EJU70598.1| DNA polymerase IV [Neisseria meningitidis 92045]
gi|432272862|gb|ELL27967.1| impB/mucB/samB family protein [Neisseria meningitidis 77221]
Length = 352
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 194/345 (56%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPYK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ +G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFDRGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|387790872|ref|YP_006255937.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Solitalea canadensis DSM 3403]
gi|379653705|gb|AFD06761.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Solitalea canadensis DSM 3403]
Length = 366
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/351 (37%), Positives = 199/351 (56%), Gaps = 18/351 (5%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM-----SMICTANYEARRFGVRAAMP 157
L R +H+DMDAFYA+VE NP KGKP+ VG + ++ TA+YEARRFGVR+AMP
Sbjct: 6 LQRKIIHIDMDAFYASVEQRDNPDYKGKPIIVGGLPQGRGGVVATASYEARRFGVRSAMP 65
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A++LCP IFV F Y S R++F +Y SLDEAYLD+T E G
Sbjct: 66 SKKAQQLCPHAIFVRPRFAAYKEVSQKIREIFHRYTDLIEPLSLDEAYLDVTHDKLEIG- 124
Query: 218 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFIS 276
S IEIA +++ ++ +E LT SAGV+ N+ +AK+ SDINKP+G F+ P+ + +F+
Sbjct: 125 SAIEIAMQIKKAIKDELNLTASAGVSVNKFVAKIASDINKPDGLTFIGPS---KIESFME 181
Query: 277 SLPIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
SL + K GIG+VT ++ ++F +++ ++ LL F+ + G+
Sbjct: 182 SLAVEKFHGIGRVTAEKMKRMNLFTGADLKKLTEEQLLLHF---GKPGKFYYKIVRGIDD 238
Query: 335 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 393
R KS+ +E TF D + +L +IA+ ++ +Q+ L+GRTLTLK+K +
Sbjct: 239 REVQPNRVTKSVGAEDTFPYDLTDLEEMNVELDKIAKTVADRLQRYQLKGRTLTLKIKYS 298
Query: 394 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQFNE 442
F+ TR + I+ + I + A LL P +RL+G+ ++ FNE
Sbjct: 299 DFKQITRNQSFLHEINDLQTIAQTAKELLLKTSPEDKKIRLLGITLSNFNE 349
>gi|254805229|ref|YP_003083450.1| DNA polymerase IV [Neisseria meningitidis alpha14]
gi|421568021|ref|ZP_16013752.1| DNA polymerase IV [Neisseria meningitidis NM3001]
gi|254668771|emb|CBA06675.1| DNA-damage-inducible protein p [Neisseria meningitidis alpha14]
gi|254672331|emb|CBA05492.1| DNA polymerase IV [Neisseria meningitidis alpha275]
gi|402342966|gb|EJU78122.1| DNA polymerase IV [Neisseria meningitidis NM3001]
Length = 352
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 195/345 (56%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|384420785|ref|YP_005630145.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353463698|gb|AEQ97977.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 369
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 141/355 (39%), Positives = 201/355 (56%), Gaps = 18/355 (5%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGF 159
L R +HVDMDAFYA+VE P L+GKP+ V G S++C A+YEAR FG+R+AMP
Sbjct: 10 LMRKIVHVDMDAFYASVEQRDAPGLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAV 69
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS- 218
A +LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T+ + G+
Sbjct: 70 RAERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQA--KTGMQL 127
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R + F+ L
Sbjct: 128 ATEIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--IDAFLLPL 185
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
+ +I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 186 KVNRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFG-SFGQSLYRRARGIDERPV 243
Query: 338 PQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F
Sbjct: 244 EPDQDVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERIGRTVVLKLKTSNF 301
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNEDKVRA 447
+ TR+ T + S E + + A L + ELP RL+G+ ++ FN+ + RA
Sbjct: 302 RILTRSCTPGQPPVSQEALAQIALALTRRVELPAQTRYRLVGVGLSGFNDVEERA 356
>gi|381170537|ref|ZP_09879693.1| ImpB/MucB/SamB family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380688994|emb|CCG36180.1| ImpB/MucB/SamB family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 359
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 196/347 (56%), Gaps = 16/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARIFGIRSAMPAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T + G+
Sbjct: 62 ERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F+ L +
Sbjct: 120 EVAQLIRTQIREEIQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAFLLPLKV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+I G+GKV + L GI T ++ Q+ S G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDERPVEPD 236
Query: 341 RFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 237 QEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRIL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 442
TR+ T ++ +S E + + A L + ELP RL+G+ + F++
Sbjct: 295 TRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGFSD 341
>gi|78049296|ref|YP_365471.1| DNA polymerase IV [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325924733|ref|ZP_08186170.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas perforans 91-118]
gi|346726392|ref|YP_004853061.1| DNA polymerase IV [Xanthomonas axonopodis pv. citrumelo F1]
gi|123584151|sp|Q3BP42.1|DPO4_XANC5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|78037726|emb|CAJ25471.1| DNA polymerase IV [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|325544825|gb|EGD16171.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas perforans 91-118]
gi|346651139|gb|AEO43763.1| DNA polymerase IV [Xanthomonas axonopodis pv. citrumelo F1]
Length = 359
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 134/347 (38%), Positives = 196/347 (56%), Gaps = 16/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +P L+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPGLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T + G+
Sbjct: 62 ERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F+ L +
Sbjct: 120 EVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAFLLPLKV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+I G+GKV + L GI T ++ Q+ S G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDERPVEPD 236
Query: 341 RFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 237 QEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRIL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 442
TR+ T ++ +S E + + A L + ELP RL+G+ ++ F++
Sbjct: 295 TRSYTPEQPPTSQEALAQIALALTRRVELPTQTRYRLVGVGLSGFSD 341
>gi|170748058|ref|YP_001754318.1| DNA-directed DNA polymerase [Methylobacterium radiotolerans JCM
2831]
gi|170654580|gb|ACB23635.1| DNA-directed DNA polymerase [Methylobacterium radiotolerans JCM
2831]
Length = 360
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 140/363 (38%), Positives = 203/363 (55%), Gaps = 21/363 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE +PSL+GKP+AVG ++ A+YEARRFGVR+AMP A
Sbjct: 8 RKIIHIDMDAFYASVEQRDDPSLRGKPLAVGGSRERGVVAAASYEARRFGVRSAMPSATA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
R+LCP+L+FV F Y S+ R VF ++ +LDEAYLD+TE G+ +
Sbjct: 68 RRLCPDLLFVKPRFEVYRAISEEIRAVFARHTAVIEPVALDEAYLDVTENL--LGLPTAT 125
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+A+ +R + E GL SAGV+ N+ LAKV SD KPN FV+ M F+++LPI
Sbjct: 126 AVAKAIRAEILERTGLVASAGVSYNKFLAKVASDHRKPNALFVI-TPAMG-PDFVAALPI 183
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+ G+G VTE ++ + GI T ++ L F + A ++ +V G+
Sbjct: 184 GRFHGVGPVTEAKMKRL-GIETGADLRAWTPERLRETFGSAGA-YYHAVARGIDGRPVRA 241
Query: 340 ARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKSI +E TFS +D A +L +LA + + + A +G+R RT+TLKLK + F
Sbjct: 242 HRVRKSIGAETTFS--DDTAAFEVLAARLAPLFDKVWAAADAKGMRARTVTLKLKFSDFA 299
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPSDPTQK 454
TRA +L ++ + + LL P+ S RLIG+ ++ F +D AP P Q
Sbjct: 300 QVTRARSLPVPVADRAGLERIGLDLLAGLFPLRRSARLIGVSLSGFAQD---APEAPLQL 356
Query: 455 TLT 457
L
Sbjct: 357 GLA 359
>gi|384539827|ref|YP_005723910.1| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti SM11]
gi|336035170|gb|AEH81101.1| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti SM11]
Length = 378
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 127/345 (36%), Positives = 192/345 (55%), Gaps = 14/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEAR+FGV +AMP A
Sbjct: 26 RKIIHIDMDAFYASVEQRDNPELRGKPVAVGYPEARGVVAAASYEARKFGVHSAMPSVTA 85
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFVP F Y S + +F +Y P SLDEAYLD+TE + ++ E
Sbjct: 86 KRKCPDLIFVPHRFDVYRAVSRQIQAIFAEYTPLIEPLSLDEAYLDVTENLKGLRLA-TE 144
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAEE+RT + + LT SAGV+ N+ LAK+ SD KP+G FV+ R F+ +LP++
Sbjct: 145 IAEEIRTRIKAKTHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKRGP--EFVQALPVK 202
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
K G+G T ++ + GI T ++ + + +F + G+ R
Sbjct: 203 KFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDEREVKPDR 261
Query: 342 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRGRTLTLKLKTASFEVR 398
RKSI +E TF ED L A + ++ + G+RG+T+TLK+K A F
Sbjct: 262 IRKSIGAEDTFR--EDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTLKVKWADFTQI 319
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
TR+ T+ I+S ++ + A +LL PV +RL+G+ ++ +
Sbjct: 320 TRSKTIVAPIASVAEMREIAELLLSPIFPVPKGIRLLGVTLSSLD 364
>gi|376296835|ref|YP_005168065.1| DNA-directed DNA polymerase [Desulfovibrio desulfuricans ND132]
gi|323459397|gb|EGB15262.1| DNA-directed DNA polymerase [Desulfovibrio desulfuricans ND132]
Length = 386
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 134/351 (38%), Positives = 196/351 (55%), Gaps = 18/351 (5%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAF+A+VE + NP L+GKP+AVG S ++ A+YE RR+GV +AM ARKLCPE+
Sbjct: 1 MDAFFASVEQMDNPELRGKPVAVGGTSDRSVVSAASYEVRRYGVHSAMSVVKARKLCPEI 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
I VP +Y S L ++ P AS+DEAYLD T + R G EI ++
Sbjct: 61 ILVPGRMGRYKEVSHLVMDALREFSPTVEQASVDEAYLDGTGLERLFGPVD-EIGRRIKA 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
V E GLTCS G AP R LAK+ SD++KP+G F++ ++ +A F+ +LP+ KI G+G
Sbjct: 120 RVKEATGLTCSVGAAPVRFLAKIASDMDKPDGMFIVRHEEVA--EFLQTLPVGKIPGVGA 177
Query: 289 VTEHILRDVFGINTCEEMLQK-GSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSIS 347
+L+ G+ TC ++L K G A + G+ T KS S
Sbjct: 178 KLLEVLKR-LGVRTCGDILLKPGEYWEERLGKYGAALY-DRARGIDPTPVTPCEAAKSCS 235
Query: 348 SERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQK 406
+E TF T D+ALL + L +E + D+++ G +GRT+TLK+K A F TR+ +L+
Sbjct: 236 AENTFREDTTDRALLRKWLLAQSERVGEDLRRHGYKGRTVTLKVKYADFSQITRSRSLEA 295
Query: 407 YISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTL 456
++ I + A LL + +LP ++RLIG+ V+ F + P Q TL
Sbjct: 296 RTDNTAVIFETACGLLEQVKLPRAVRLIGVGVSNFG-------ARPRQVTL 339
>gi|333897923|ref|YP_004471797.1| DNA polymerase IV [Thermoanaerobacterium xylanolyticum LX-11]
gi|333113188|gb|AEF18125.1| DNA polymerase IV [Thermoanaerobacterium xylanolyticum LX-11]
Length = 379
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/353 (35%), Positives = 205/353 (58%), Gaps = 14/353 (3%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A++E NP L+GKP+ VG +S ++ T +YEAR++GV +AMP +
Sbjct: 1 MMRKIIHVDMDAFFASIEQHDNPKLRGKPVIVGGLSGRGVVSTCSYEARKYGVHSAMPMY 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+A+ LCP IF+P F +Y S+ + + S+DEAYLD+T++ +
Sbjct: 61 MAKTLCPHGIFLPVRFQRYREVSEKVFDILYEVTDIVEPLSIDEAYLDVTDIDKNPE--- 117
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
+IA+E++ V+ GLT SAGV+ N+ LAK+ SD NKP+G ++ D V + L
Sbjct: 118 -DIAKEIKEKVHMVTGLTVSAGVSYNKFLAKIASDWNKPDGLMIITED--MVPDILRPLS 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
+ K+ GIGK + L+ + G+ +++L+ L +F + + + G+ S
Sbjct: 175 VSKVYGIGKKSSERLKKI-GVEKVDDLLKLSQDELTNIFGKYGKEIYDRIR-GIDSRPVE 232
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R KSI E T T D LL + L A+++S++++ E L RT+T+K+KT++F +
Sbjct: 233 TYRETKSIGKETTLKKDTSDADLLLKYLRGFADIVSSELKGERLYCRTVTVKIKTSNFTL 292
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFNEDKVRAPS 449
TR+ TL +YI SS+DI A + K A++ +RLIGL V+ + K++ S
Sbjct: 293 HTRSRTLNEYIDSSDDIYSVAEAIFKEAKMTQPVRLIGLSVSNLSATKIKQLS 345
>gi|329893969|ref|ZP_08269988.1| DNA polymerase IV [gamma proteobacterium IMCC3088]
gi|328923368|gb|EGG30686.1| DNA polymerase IV [gamma proteobacterium IMCC3088]
Length = 361
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 192/337 (56%), Gaps = 18/337 (5%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVGTMSM---ICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE NP L+GKP+AVG + + A+YEAR+FGV++AMP A++LCP+L
Sbjct: 1 MDAFYASVEQRDNPELRGKPIAVGGARLRGVVAAASYEARKFGVKSAMPSVTAQRLCPDL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFV F Y S R++F +Y SLDEAYLD+T+ R G S ++IA +R
Sbjct: 61 IFVKARFDVYRSVSAQIREIFSRYTDVIEPLSLDEAYLDVTQDKRGVG-SAVKIAHMIRK 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLPIRKIGGIG 287
S+YEE LT SAG++ N+ +AK+ SD NKPNGQ VLP++ A F+ LP+R+ G+G
Sbjct: 120 SIYEELNLTASAGISYNKFIAKIASDQNKPNGQCVVLPDEGEA---FVGQLPVRRFYGVG 176
Query: 288 -KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSI 346
K E + R + T ++ A S+AD+ G+ R RKS+
Sbjct: 177 PKTAEKMAR--LNLQTGADIRACSLAFLAENFGSSADYLYKASRGVDHRPVRPNRIRKSV 234
Query: 347 SSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVT 403
+ERT+ ED + L + IAE + QK G +G+T TLK+K F+ TRA++
Sbjct: 235 GAERTY--PEDLSQLESLREAVVSIAEEVWVRSQKNGCQGKTATLKIKFNDFQQITRAMS 292
Query: 404 LQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
L S ++ + LL+ E P+ +RL+G +++
Sbjct: 293 LDHLFGSEAELREVLLGLLQKEWPLRRPVRLVGAQLS 329
>gi|332667689|ref|YP_004450477.1| DNA polymerase IV [Haliscomenobacter hydrossis DSM 1100]
gi|332336503|gb|AEE53604.1| DNA polymerase IV [Haliscomenobacter hydrossis DSM 1100]
Length = 358
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 199/347 (57%), Gaps = 14/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI---CTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE NP L+G+P+AVG +A+YEAR++GVR+AM G +A
Sbjct: 2 RKIIHIDMDAFFASVEQRDNPDLRGRPLAVGGGGPRGVVASASYEARKYGVRSAMSGGMA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
R+LCPE++FV + F Y S R +F Y SLDEAYLD+TE ++ S
Sbjct: 62 RRLCPEIVFVRSRFDVYRSVSYQIRDIFLDYTDLVEPLSLDEAYLDVTE-NKKNMTSATL 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLPI 280
IA+E+R + E GLT SAGV+ N+ LAK+ SDINKPNG + + P + +A F+ L +
Sbjct: 121 IAQEIRKRIEAETGLTASAGVSFNKFLAKIASDINKPNGIKVITPEEAIA---FLEQLAV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
K G+GKVT + ++ GI T ++ Q+ F ++ + +
Sbjct: 178 EKFHGVGKVTARKMHNM-GIYTGGDLKQRSEADLVRFFGKAGRYYYRIVRAEDNREVNPH 236
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKSI +ERTF+ D ++ KL ++AE + M K GRT+TLKLK+ F++ T
Sbjct: 237 RIRKSIGAERTFNEDVSDPEIMKNKLTDLAEGVHRYMDKTQNFGRTVTLKLKSPDFKILT 296
Query: 400 RAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGLRVTQFNED 443
R+ + I + +++++ LL E P+ +RL+G+ ++ ++
Sbjct: 297 RSRSFASEIRNLDELIRIVHDLLDQHIEEAPI-VRLLGVTLSNLEKE 342
>gi|296314223|ref|ZP_06864164.1| DNA-directed DNA polymerase [Neisseria polysaccharea ATCC 43768]
gi|296839124|gb|EFH23062.1| DNA-directed DNA polymerase [Neisseria polysaccharea ATCC 43768]
Length = 352
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 194/345 (56%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ TR +T + +L+ A +L A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCVALLQ-AVQMLMARVPPQTEDAFRLIGIGV 338
>gi|153939133|ref|YP_001392095.1| DNA polymerase IV [Clostridium botulinum F str. Langeland]
gi|384463083|ref|YP_005675678.1| DNA polymerase IV [Clostridium botulinum F str. 230613]
gi|152935029|gb|ABS40527.1| DNA polymerase IV [Clostridium botulinum F str. Langeland]
gi|295320100|gb|ADG00478.1| DNA polymerase IV [Clostridium botulinum F str. 230613]
Length = 349
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 197/350 (56%), Gaps = 14/350 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE + N L+GKP+ VG + ++ TA+YEAR++GV +AMP F
Sbjct: 1 MDRVIIHVDMDAFFASVEQMDNKKLRGKPVIVGGIGERGVVSTASYEARKYGVHSAMPVF 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
IA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 61 IAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEE----P 116
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ D + + + LP
Sbjct: 117 IKVAEHIKKKVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQDMIP--SILMPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGSTNTP 338
I KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 175 INKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDYREVK 232
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKSI E T +K + + L + + +SA++ K G+T+T+K+KT++F+
Sbjct: 233 VSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSANLYKRNSGGKTVTVKIKTSNFQT 292
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 446
TR+ T+ YI ++I A +L +RLIGL V+ E+K++
Sbjct: 293 HTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGENKIK 342
>gi|433656055|ref|YP_007299763.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433294244|gb|AGB20066.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 379
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 132/357 (36%), Positives = 211/357 (59%), Gaps = 22/357 (6%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE NP LKGKP+ VG +S ++ T +YEAR++G+ +AMP +
Sbjct: 1 MMRKIIHVDMDAFFASVEQHDNPKLKGKPVIVGGLSGRGVVSTCSYEARKYGIHSAMPMY 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVF-CKYDPNFMA--ASLDEAYLDITEVCRERG 216
+A++LCP IF+P F +Y ++++KVF Y+ + S+DEAYLD+T++ +
Sbjct: 61 MAKRLCPNGIFLPVRFERY---REVSKKVFDILYEVTDIVEPLSIDEAYLDVTDIDKNPE 117
Query: 217 ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 276
+IA+E++ VY GLT SAGV+ N+ LAK+ SD NKP+G V+ D V +
Sbjct: 118 ----DIAKEIKEKVYMTTGLTVSAGVSYNKFLAKIASDWNKPDGLMVITED--MVPDILR 171
Query: 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSV-GLGLGS 334
L + K+ GIG+ + L+ + GI +++L+ L +F + + + G+ L
Sbjct: 172 PLNVSKVYGIGEKSSERLKKI-GIEKVDDLLKLSEEELTNIFGKYGKEIYDRIRGIDLRP 230
Query: 335 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 393
T R KSI E T T+D +L + L + +S +++KE L RT+T+K+KT
Sbjct: 231 VET--YRETKSIGKETTLKEDTDDIEILSKYLGGFSRTISLELKKEKLYCRTVTVKIKTW 288
Query: 394 SFEVRTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFNEDKVRAPS 449
+F V T++ TL +YI S EDI AS +LK + + +RLIGL V+ + + ++ S
Sbjct: 289 NFTVHTKSRTLNEYIDSPEDIYNVASSILKESNISQPVRLIGLSVSNLSTNNIKQLS 345
>gi|182418367|ref|ZP_02949662.1| DNA polymerase IV [Clostridium butyricum 5521]
gi|237666322|ref|ZP_04526307.1| DNA polymerase IV [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182377749|gb|EDT75293.1| DNA polymerase IV [Clostridium butyricum 5521]
gi|237657521|gb|EEP55076.1| DNA polymerase IV [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 348
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 133/354 (37%), Positives = 200/354 (56%), Gaps = 23/354 (6%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
++ + LHVDMDAF+A+VE + NP LKGKP+ VG +S ++ T +YEAR++GV +AMP F
Sbjct: 1 MNNNILHVDMDAFFASVEQMDNPELKGKPVIVGGVSERGVVSTCSYEARKYGVHSAMPIF 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+A++ CP IFV + +YT S K+ P S+DE YLD+++ R +G
Sbjct: 61 MAKEKCPNGIFVAGRYGRYTKISQEIFKILSDVTPIIEQVSIDEGYLDLSQ---SRFENG 117
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
I+ A ++ V++E GLT S G++ N+ LAK+ SD NKPNG + R + + LP
Sbjct: 118 IDAARYIKNKVFKEIGLTISVGISYNKFLAKLASDWNKPNG--IKEISRSMIPDILLPLP 175
Query: 280 IRKIGGIGKVTEHILRD--VFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
+ KI G+GK++ L + +F I M +K + D + + G+ +
Sbjct: 176 LSKIHGLGKISVGKLNNMGIFYIKDLYNMEKK--FYIEYLGKNGLDIYDRIR-GIDNRKI 232
Query: 338 PQARFRKSISSERTFSV-TEDKALLYRKLA----EIAEMLSADMQKEGLRGRTLTLKLKT 392
R RKS+ ERT T++K L + L EI EML A + + G+T+TLK KT
Sbjct: 233 ETIRERKSVGKERTLKFDTDNKEELLQYLKEFSFEIEEMLCA----KNVVGKTVTLKFKT 288
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFNEDKV 445
FE TR+ TL YIS EDI + LL++ EL +LRLIG+ ++ F E ++
Sbjct: 289 KDFENHTRSRTLNNYISYHEDIFNVSKELLESEELKSNLRLIGVSISSFKEKEI 342
>gi|419797103|ref|ZP_14322604.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
gi|385698791|gb|EIG29135.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
Length = 382
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 193/346 (55%), Gaps = 18/346 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LKG P+ V G S+IC A+YEAR+FG+ +AM A
Sbjct: 34 RKIIHIDMDAFYASVELREQPHLKGLPVVVAWEGARSVICAASYEARQFGLHSAMSVATA 93
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + + E
Sbjct: 94 KRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTHNFKNIPYAS-E 152
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 153 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPLG 210
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 211 KIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERPV 265
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R+ + ++ ED +L L +AE L + ++ + + +TLKLKT F +
Sbjct: 266 KAERERLQISTEITLPEDLSLEQAAGHLPHLAEDLWRQIARKNVEAKGVTLKLKTHDFRI 325
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 440
TR++T + ++ +L A L++ P + RLIG+ V
Sbjct: 326 ITRSLTYSSVLPDTDALLCAAQTLMQRVPPQREDAFRLIGIGVNHL 371
>gi|148380777|ref|YP_001255318.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 3502]
gi|153932271|ref|YP_001385062.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 19397]
gi|153934711|ref|YP_001388531.1| DNA polymerase IV [Clostridium botulinum A str. Hall]
gi|148290261|emb|CAL84381.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 3502]
gi|152928315|gb|ABS33815.1| DNA polymerase IV [Clostridium botulinum A str. ATCC 19397]
gi|152930625|gb|ABS36124.1| DNA polymerase IV [Clostridium botulinum A str. Hall]
Length = 349
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 196/350 (56%), Gaps = 14/350 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE + N LKGKP+ VG + ++ TA+YEAR++GV +AMP F
Sbjct: 1 MDRVIIHVDMDAFFASVEQMDNKKLKGKPVIVGGIGERGVVSTASYEARKYGVHSAMPVF 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
IA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 61 IAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEE----P 116
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ D + + + LP
Sbjct: 117 IKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQDMIP--SILMPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGSTNTP 338
I KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 175 INKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDYREVK 232
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKSI E T +K + + L + + +S ++ K G+T+T+K+KT++F+
Sbjct: 233 VSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNTGGKTVTVKIKTSNFQT 292
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 446
TR+ T+ YI ++I A +L +RLIGL V+ E+K++
Sbjct: 293 HTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGENKIK 342
>gi|27375972|ref|NP_767501.1| DNA polymerase IV [Bradyrhizobium japonicum USDA 110]
gi|27349111|dbj|BAC46126.1| DNA-damage-inducible protein [Bradyrhizobium japonicum USDA 110]
Length = 366
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/349 (36%), Positives = 195/349 (55%), Gaps = 20/349 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG + ++ A+YEAR+FGVR+AMP A
Sbjct: 15 RKIIHIDMDAFYASVEQRDNPELRGKPVAVGGSAERGVVAAASYEARKFGVRSAMPSVTA 74
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFV F Y S R++F ++ P SLDEAYLD+TE + GI
Sbjct: 75 KRQCPDLIFVRPRFEVYKAISRQIREIFAEHTPIIEPLSLDEAYLDVTE-----NLQGIP 129
Query: 222 IAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
+A + +R + E GL SAG++ N+ LAK+ SD KPNGQFV+ + F+ +
Sbjct: 130 LARDVALRIREKIKAETGLNASAGISYNKFLAKLASDHRKPNGQFVISPEMGP--AFVEA 187
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
LP+ K GIG T + + GI T +M Q + A F + A ++ + G+
Sbjct: 188 LPVGKFHGIGPATSAKM-NALGIFTGRDMRNQTLEFMNANFGKAGA-YYYWISRGVDERP 245
Query: 337 TPQARFRKSISSERTFSVTEDKA-LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKSI +E TF D+ L L + + + + G RGRT+TLK+K A F
Sbjct: 246 VRANRIRKSIGAETTFQADLDEFDALVAALKPLVDKVWRHCEATGNRGRTVTLKIKFADF 305
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNE 442
E+ TR+ + ++ +D+ + LL+ E+P+ +RL+G+ ++ +
Sbjct: 306 EIITRSRSAPTPVAGRDDLERLTCGLLEVEMPLPKRVRLLGVSLSALQD 354
>gi|345016684|ref|YP_004819037.1| DNA polymerase IV [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032027|gb|AEM77753.1| DNA polymerase IV [Thermoanaerobacter wiegelii Rt8.B1]
Length = 389
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 197/351 (56%), Gaps = 26/351 (7%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE NP KGKP+ VG +S ++ T +YEAR++G+ +AMP +
Sbjct: 1 MKRKIIHVDMDAFFASVEQHDNPEYKGKPVIVGGLSERGVVSTCSYEARKYGIHSAMPMY 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+A+KLCP IF+ +Y S + P S+DEAYLD+T + + I
Sbjct: 61 MAKKLCPHGIFLSVRRKRYEEVSKQIFDILYSITPLVEPVSIDEAYLDVTYIDKNPEI-- 118
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IA E++ V E GLT SAGV+ N+ LAK+ SD NKP+G V+ D + + LP
Sbjct: 119 --IALEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFMVITEDMIP--DILKPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-------GL 332
+ K+ GIG+ +E L+ GINT +++L+ + S + F +GL G+
Sbjct: 175 VSKVYGIGEKSEQKLK-AMGINTIDDLLK-------LSQESLIEIFGKLGLEIYNRIRGI 226
Query: 333 GSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
R KSI E+T T+DK LL + ++++S ++ +E L RT+T+K+K
Sbjct: 227 DERPVETMREIKSIGKEKTLEKDTKDKKLLLHYVKLFSDIISEELVRERLYARTVTVKIK 286
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFN 441
T F V T++ TL KYI EDI A ++++ +L +RLIGL V+ +
Sbjct: 287 TPDFAVHTKSKTLNKYIRLGEDIYDVAYEIIESLKLDQYIRLIGLSVSNLS 337
>gi|168184461|ref|ZP_02619125.1| DNA polymerase IV [Clostridium botulinum Bf]
gi|237796253|ref|YP_002863805.1| DNA polymerase IV [Clostridium botulinum Ba4 str. 657]
gi|182672433|gb|EDT84394.1| DNA polymerase IV [Clostridium botulinum Bf]
gi|229262753|gb|ACQ53786.1| DNA polymerase IV [Clostridium botulinum Ba4 str. 657]
Length = 349
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 196/350 (56%), Gaps = 14/350 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE + N LKGKP+ VG + ++ TA+YEAR++GV +AMP F
Sbjct: 1 MDRVIIHVDMDAFFASVEQMDNKKLKGKPIIVGGIGERGVVSTASYEARKYGVHSAMPVF 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
IA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 61 IAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEE----P 116
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ D + + + LP
Sbjct: 117 IKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQDMIP--SILMPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGSTNTP 338
I KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 175 INKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDYREVK 232
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKSI E T +K + + L + + +S ++ K G+T+T+K+KT++F+
Sbjct: 233 VSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGKTVTVKIKTSNFQT 292
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 446
TR+ T+ YI ++I A +L +RLIGL V+ E+K++
Sbjct: 293 HTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGENKIK 342
>gi|375144729|ref|YP_005007170.1| DNA polymerase IV [Niastella koreensis GR20-10]
gi|361058775|gb|AEV97766.1| DNA polymerase IV [Niastella koreensis GR20-10]
Length = 358
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 200/344 (58%), Gaps = 12/344 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM----SMICTANYEARRFGVRAAMPGFI 160
R +H+DMDAFYA+VE NP L+GK +AVG + ++ TA+YEAR+FGVR+AMP
Sbjct: 4 RKIIHIDMDAFYASVEQRDNPELRGKAIAVGGLPENRGVVATASYEARKFGVRSAMPSKR 63
Query: 161 ARKLCPELIFV-PTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
A +LCPEL+FV P F Y S R++F +Y SLDEAYLD+TE ++ G S
Sbjct: 64 AVQLCPELVFVAPPRFAVYKAVSRQVREIFHRYTDLIEPLSLDEAYLDVTEDKQQIG-SA 122
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
I IA++++ ++ +E LT SAGV+ N+ +AK+ SD+NKP+G +P D+ V F+ SLP
Sbjct: 123 IGIAKQIKAAIRDELQLTASAGVSINKFVAKIASDMNKPDGLTFIPPDK--VEAFMESLP 180
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+ K G+GKVT + + + T ++ + + F+ + G+
Sbjct: 181 VNKFHGVGKVTAEKM-NTLNLFTGADLKKLTEVELVRLFGKPGSFYYKIVRGIDDRPVEP 239
Query: 340 ARFRKSISSERTFSVTEDKAL-LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R KSIS+E TF D + + +L +A +++ +Q+ L+G+T+TLK++ + F+
Sbjct: 240 NRETKSISAEDTFLNDLDNPVEMKEQLDRLAAVVTNRLQQYELKGKTITLKIRYSDFKQL 299
Query: 399 TRAVTLQKYISSSEDILKHA-SVLLKAELP-VSLRLIGLRVTQF 440
TR+ TL + E I +LLK ++ +RL+G+ V+ F
Sbjct: 300 TRSQTLPAAVCDQETIAATVLQLLLKTDIQEAKIRLLGVGVSNF 343
>gi|387819084|ref|YP_005679431.1| DNA polymerase IV [Clostridium botulinum H04402 065]
gi|322807128|emb|CBZ04702.1| DNA polymerase IV [Clostridium botulinum H04402 065]
Length = 349
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 196/350 (56%), Gaps = 14/350 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE + N LKGKP+ VG + ++ TA+YEAR++GV +AMP F
Sbjct: 1 MDRVIMHVDMDAFFASVEQMDNKKLKGKPVIVGGIGERGVVSTASYEARKYGVHSAMPVF 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
IA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 61 IAKKRCPFGIYVPGRHERYKEVSNNIFKILYKITPIIEPVSIDEAYLDITNIKEE----P 116
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ D + + + LP
Sbjct: 117 IKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQD--MIPSILMPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGSTNTP 338
I KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 175 INKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDYREVK 232
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKSI E T +K + + L + + +S ++ K G+T+T+K+KT++F+
Sbjct: 233 VSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGKTVTVKIKTSNFQT 292
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 446
TR+ T+ YI ++I A +L +RLIGL V+ E+K++
Sbjct: 293 HTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGENKIK 342
>gi|116254503|ref|YP_770339.1| DNA polymerase IV [Rhizobium leguminosarum bv. viciae 3841]
gi|115259151|emb|CAK10264.1| putative DNA polymerase [Rhizobium leguminosarum bv. viciae 3841]
Length = 370
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 125/347 (36%), Positives = 190/347 (54%), Gaps = 12/347 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L G P+AVG ++ A+YEAR FGV +AMP A
Sbjct: 18 RKIIHVDMDAFYASVEQRDNPELHGLPLAVGGSAARGVVAAASYEARVFGVHSAMPSVTA 77
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFVP F Y S R++F +Y P SLDEAYLD+TE + I+ E
Sbjct: 78 KRKCPDLIFVPPRFEVYRQVSQQIREIFAEYTPLIEPLSLDEAYLDVTENLKGMEIA-TE 136
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + F+ +LP+
Sbjct: 137 IALEIRAKIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPG---FVEALPV 193
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T ++ GI T ++ K + +F + G+
Sbjct: 194 KKFHGVGPATAERMKR-HGIETGLDLKSKSLAFLQQHFGKSGPYFYGIARGIDERQVRPD 252
Query: 341 RFRKSISSERTFSVTEDKALLYR-KLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TF D L + +L +AE + + + G+T+T+K+K + F T
Sbjct: 253 RIRKSVGAEDTFVEDIDNFDLAKAELRPLAEKVRRYCEAHDITGKTVTVKIKYSDFSQAT 312
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 444
R+ T+ +S + +L+ A LL + P +RL+G+ ++ N ++
Sbjct: 313 RSQTVSGAVSDVDQMLEIAETLLASVFPFKRPVRLLGVTLSSLNTEE 359
>gi|285019488|ref|YP_003377199.1| DNA polymerase iv protein [Xanthomonas albilineans GPE PC73]
gi|283474706|emb|CBA17205.1| probable dna polymerase iv protein [Xanthomonas albilineans GPE
PC73]
Length = 353
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 140/356 (39%), Positives = 199/356 (55%), Gaps = 34/356 (9%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +P+L+GKP+ V G S++C A+YEAR FGVR+AMP A
Sbjct: 2 RKIIHVDMDAFYASVEQRDDPALRGKPVVVAWRGMRSVVCAASYEARVFGVRSAMPALRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+ IFVP DF +Y S R +F ++ SLDEAYLD+T V + + E
Sbjct: 62 ERLCPDAIFVPPDFARYKAVSRQVRAIFQRHTDLIEPLSLDEAYLDVT-VPKGGPAAATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+ +R + EE LT SAG+APN+ LAK+ SD KP+GQ V+ R V F++ LP+
Sbjct: 121 IAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQCVIHPHR--VEAFLTPLPVN 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGL-------G 331
K+ G+GKV + L GI T ++ C S A+ F S GL G
Sbjct: 179 KVPGVGKVMQSKL-AALGIVTVGDLRD-----C-----SEAELEARFGSFGLRLYQRARG 227
Query: 332 LGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLK 389
+ + +SISSE TF+ ED AL L + +AE ++ RT+ LK
Sbjct: 228 IDERPVESDQPVQSISSEDTFA--EDLALEALEPAIRRLAEKTWDATRRTDRVARTVVLK 285
Query: 390 LKTASFEVRTRAVTLQKYISSSEDILKHASVL-LKAELPVS--LRLIGLRVTQFNE 442
LKTA F + TR+ T ++ S + ++ A L + +LP S RL+G+ ++ F+E
Sbjct: 286 LKTAQFRILTRSFTPERPPESLQTLIDIALALRQRVDLPASTRYRLVGVGLSGFHE 341
>gi|226950227|ref|YP_002805318.1| DNA polymerase IV [Clostridium botulinum A2 str. Kyoto]
gi|226843691|gb|ACO86357.1| DNA polymerase IV [Clostridium botulinum A2 str. Kyoto]
Length = 349
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 196/350 (56%), Gaps = 14/350 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE + N LKGKP+ VG + ++ TA+YEAR++GV +AMP F
Sbjct: 1 MDRVIIHVDMDAFFASVEQMDNKKLKGKPVIVGGIGERGVVSTASYEARKYGVHSAMPVF 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
IA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 61 IAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEE----P 116
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ D + + + LP
Sbjct: 117 IKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQDMIP--SILMPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGSTNTP 338
I KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 175 INKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDYREVK 232
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKSI E T +K + + L + + +S ++ K G+T+T+K+KT++F+
Sbjct: 233 VSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGKTVTVKIKTSNFQT 292
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 446
TR+ T+ YI ++I A +L +RLIGL V+ E+K++
Sbjct: 293 HTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGENKIK 342
>gi|254670271|emb|CBA05549.1| DNA polymerase IV [Neisseria meningitidis alpha153]
Length = 400
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 133/360 (36%), Positives = 201/360 (55%), Gaps = 21/360 (5%)
Query: 90 ADKRILELEATRDLS-RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANY 145
A RI L + +S R +H+DMDAFYA+VE P LKG+P+ V G S+IC A+Y
Sbjct: 36 AGSRISLLSSAEPMSSRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASY 95
Query: 146 EARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAY 205
EAR+FG+ +AM A++LCP+ ++VP F Y S VF +Y SLDEAY
Sbjct: 96 EARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAY 155
Query: 206 LDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP 265
LD+T + + E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP
Sbjct: 156 LDVTRNFKNIPYAS-EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLP 214
Query: 266 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTAD 323
+ VM F+ +LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H
Sbjct: 215 PHK--VMAFLETLPLGKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRY 267
Query: 324 FFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGL 381
+ L G+ P R+ + ++ ED L L +AE L + ++ +
Sbjct: 268 GYRLYDLVRGTDERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNV 327
Query: 382 RGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+++TLKLKT F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 328 EAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 386
>gi|59801155|ref|YP_207867.1| DNA polymerase IV [Neisseria gonorrhoeae FA 1090]
gi|240014082|ref|ZP_04720995.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
DGI18]
gi|240016516|ref|ZP_04723056.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
FA6140]
gi|240121643|ref|ZP_04734605.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
PID24-1]
gi|268599074|ref|ZP_06133241.1| impB/mucB/samB family protein [Neisseria gonorrhoeae MS11]
gi|268684378|ref|ZP_06151240.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-92-679]
gi|268686699|ref|ZP_06153561.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-93-1035]
gi|293399022|ref|ZP_06643187.1| DNA polymerase IV [Neisseria gonorrhoeae F62]
gi|75432500|sp|Q5F8N2.1|DPO4_NEIG1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|59718050|gb|AAW89455.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae FA
1090]
gi|268583205|gb|EEZ47881.1| impB/mucB/samB family protein [Neisseria gonorrhoeae MS11]
gi|268624662|gb|EEZ57062.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-92-679]
gi|268626983|gb|EEZ59383.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-93-1035]
gi|291610436|gb|EFF39546.1| DNA polymerase IV [Neisseria gonorrhoeae F62]
Length = 352
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 194/347 (55%), Gaps = 20/347 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVATV 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G E
Sbjct: 64 KRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG-E 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPLG 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 181 KIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDEHPV 235
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F +
Sbjct: 236 KAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRI 295
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRVTQF 440
TR +T + +L+ A +L+ A +P + RLIG+ V +
Sbjct: 296 ITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGVGRL 341
>gi|424796310|ref|ZP_18222059.1| DNA polymerase IV [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|422795030|gb|EKU23796.1| DNA polymerase IV [Xanthomonas translucens pv. graminis ART-Xtg29]
Length = 353
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 139/359 (38%), Positives = 200/359 (55%), Gaps = 40/359 (11%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +P+L+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIIHVDMDAFYASVEQRDDPALRGKPVVVAWRGMRSVVCAASYEARVFGIRSAMPALRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI--SG 219
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T +G +
Sbjct: 62 ERLCPDAIFVPPDFARYKAVSRQVREIFQRHTDLIEPLSLDEAYLDVTA---PKGALSTA 118
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSL 278
EIA+ +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+ P+ V F++ L
Sbjct: 119 TEIAQTIRAQIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQ---VDAFLTPL 175
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGL----- 330
P+ K+ G+GKV + L GI T ++ +H A+ F S GL
Sbjct: 176 PVSKVHGVGKVMQAKL-AALGIVTVGDLR----------THGEAELEARFGSFGLRLYQR 224
Query: 331 --GLGSTNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTL 386
G+ + +SISSE TF+ ED AL L + +AE ++ RT+
Sbjct: 225 ARGIDPRPVEANQQVQSISSEDTFA--EDLALDALAPAIRLLAEKTWTATRRTERIARTV 282
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 442
LKLKTA F + TR+ T ++ S + + A L + +LP S RL+G+ + F+E
Sbjct: 283 VLKLKTAQFRILTRSFTPEQPPDSLQALTDIALALCQRVDLPASTRYRLVGVGLAGFHE 341
>gi|421565721|ref|ZP_16011491.1| DNA polymerase IV [Neisseria meningitidis NM3081]
gi|402343298|gb|EJU78447.1| DNA polymerase IV [Neisseria meningitidis NM3081]
Length = 352
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 194/345 (56%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPYK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ +G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFDRGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|421563647|ref|ZP_16009463.1| DNA polymerase IV [Neisseria meningitidis NM2795]
gi|421907165|ref|ZP_16337050.1| DNA polymerase IV [Neisseria meningitidis alpha704]
gi|393291682|emb|CCI73036.1| DNA polymerase IV [Neisseria meningitidis alpha704]
gi|402340132|gb|EJU75335.1| DNA polymerase IV [Neisseria meningitidis NM2795]
Length = 352
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 128/345 (37%), Positives = 194/345 (56%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHTVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L + P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARSTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VEAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSILPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|334140370|ref|YP_004533572.1| DNA polymerase IV [Novosphingobium sp. PP1Y]
gi|333938396|emb|CCA91754.1| DNA polymerase IV [Novosphingobium sp. PP1Y]
Length = 374
Score = 206 bits (524), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 136/356 (38%), Positives = 194/356 (54%), Gaps = 18/356 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPG 158
D R +HVDMDAFYA+VE +P L+GKP+AVG S ++ A+YEAR+FGVR+AMP
Sbjct: 16 DGLRKIIHVDMDAFYASVEQRDDPELRGKPVAVGGSSGRGVVAAASYEARKFGVRSAMPS 75
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS 218
A + CP LIF F Y S R +F +Y P+ SLDEAYLD+T + G S
Sbjct: 76 TRAARQCPGLIFRKPRFEVYRAVSQQIRAIFHEYTPHVEPLSLDEAYLDVTADLKGLG-S 134
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISS 277
IAEE+R + E GLT SAGV+ N+ LAK+ SD NKP+G V+ P + A F++
Sbjct: 135 ATRIAEEIRRRIKSETGLTASAGVSYNKFLAKLASDQNKPDGLCVIRPGEGAA---FVAM 191
Query: 278 LPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
LP+R+ G+G + E + R GI T ++ K S A++ G+
Sbjct: 192 LPVRRFHGVGPRGAEKMAR--LGIETGADLRGKDIHFLRQHFGSFAEYLYRAARGVDLRQ 249
Query: 337 TPQARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 393
R RKS+ ERTF ED A L + I +++ +++ RGRT+TLKL+ A
Sbjct: 250 VRANRPRKSVGGERTF--FEDIARADALRETMDSIIDIVWDRIERAETRGRTITLKLRYA 307
Query: 394 SFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNEDKVRA 447
F TRA +L +++ E+ + LL LP +RL+GL ++ ++ A
Sbjct: 308 DFRTITRARSLSHFVTGKEEFGQIGHALLDDLMPLPQPIRLMGLTLSALEREEAVA 363
>gi|416161050|ref|ZP_11606273.1| DNA polymerase IV [Neisseria meningitidis N1568]
gi|418288632|ref|ZP_12901092.1| DNA polymerase IV [Neisseria meningitidis NM233]
gi|418290884|ref|ZP_12902979.1| DNA polymerase IV [Neisseria meningitidis NM220]
gi|433473835|ref|ZP_20431195.1| impB/mucB/samB family protein [Neisseria meningitidis 97021]
gi|433481353|ref|ZP_20438620.1| impB/mucB/samB family protein [Neisseria meningitidis 2006087]
gi|433484383|ref|ZP_20441607.1| impB/mucB/samB family protein [Neisseria meningitidis 2002038]
gi|433486655|ref|ZP_20443847.1| impB/mucB/samB family protein [Neisseria meningitidis 97014]
gi|325128493|gb|EGC51371.1| DNA polymerase IV [Neisseria meningitidis N1568]
gi|372200836|gb|EHP14847.1| DNA polymerase IV [Neisseria meningitidis NM220]
gi|372201466|gb|EHP15389.1| DNA polymerase IV [Neisseria meningitidis NM233]
gi|432209296|gb|ELK65265.1| impB/mucB/samB family protein [Neisseria meningitidis 97021]
gi|432218110|gb|ELK73973.1| impB/mucB/samB family protein [Neisseria meningitidis 2006087]
gi|432220314|gb|ELK76137.1| impB/mucB/samB family protein [Neisseria meningitidis 2002038]
gi|432221174|gb|ELK76987.1| impB/mucB/samB family protein [Neisseria meningitidis 97014]
Length = 352
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 130/349 (37%), Positives = 194/349 (55%), Gaps = 28/349 (8%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T R I
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVT-----RNFKNI 117
Query: 221 ----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 276
E+A+E+R +++ E GLT SAG+A N+ LAK+ SD KPNGQFVLP + VM F+
Sbjct: 118 PYDSEVAKEIRAAIFAETGLTASAGIASNKFLAKIASDWRKPNGQFVLPPHK--VMAFLE 175
Query: 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGS 334
+LP+ KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+
Sbjct: 176 TLPLGKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGT 230
Query: 335 TNTPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
P R+ + ++ ED L L +AE L + ++ + +++TLKLKT
Sbjct: 231 DERPVKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKT 290
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
F + TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 291 YDFRIITRTLTYSSVLPDCASLLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|93117311|gb|ABE99573.1| DinB [Neisseria meningitidis]
gi|93117319|gb|ABE99577.1| DinB [Neisseria meningitidis]
Length = 336
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 188/331 (56%), Gaps = 16/331 (4%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELP 427
+ TR +T + +L+ A +L+ A +P
Sbjct: 295 IITRTLTYSSVLPDCTALLQAAQMLM-ARVP 324
>gi|256379783|ref|YP_003103443.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
gi|255924086|gb|ACU39597.1| DNA-directed DNA polymerase [Actinosynnema mirum DSM 43827]
Length = 430
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 133/358 (37%), Positives = 197/358 (55%), Gaps = 13/358 (3%)
Query: 93 RILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARR 149
R+ E + D LHVDMDAFYA+VE P L P+ VG + ++ +ANY AR
Sbjct: 16 RVREGDVPDDAGCRMLHVDMDAFYASVEIRDRPELARLPVVVGGTAHRGVVASANYLARE 75
Query: 150 FGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDIT 209
FGVR+AMP AR+L P +F+P DFTKY S ++F + P SLDEA+LD+
Sbjct: 76 FGVRSAMPTAHARRLAPHAVFLPPDFTKYRDVSRGVMELFRQVTPLVEPLSLDEAFLDVG 135
Query: 210 EVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRM 269
R + EIA +R V E G+TCS GVA + LAK+ S + KP+G V+P DR
Sbjct: 136 GALRRLRATPAEIAARVRVDVEREHGITCSVGVASTKFLAKLSSGMCKPDGLMVVPKDR- 194
Query: 270 AVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSV 328
+ F+ LP+ + G+GK T L D G+ T ++ L L + A+ +
Sbjct: 195 -ALEFLHPLPVGALWGVGKRTAEQL-DRLGLETVGDVAAAPLLRLRKAVGVALAEHLYA- 251
Query: 329 GLGLGSTNTPQARF--RKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRT 385
L G + P + KSI +E TF V D+A+L +L ++E +A ++ +GLRGRT
Sbjct: 252 -LARGHDDRPVVPYTREKSIGAEETFEVDHFDRAVLKLELLRLSERTAASLRAKGLRGRT 310
Query: 386 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNE 442
+++K++ A F TR+ TL+ + ++ A+ LL +P ++RLIG+RV Q +E
Sbjct: 311 VSIKVRFADFTTITRSKTLRVATDVAREVYATATSLLDDHVPPGAVRLIGVRVEQLSE 368
>gi|390933370|ref|YP_006390875.1| DNA polymerase IV [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389568871|gb|AFK85276.1| DNA polymerase IV [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 379
Score = 206 bits (523), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 128/353 (36%), Positives = 203/353 (57%), Gaps = 14/353 (3%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE NP L+GKP+ VG +S ++ T +YEAR++GV +AMP +
Sbjct: 1 MMRKIIHVDMDAFFASVEQHDNPKLRGKPVIVGGLSGRGVVSTCSYEARKYGVHSAMPMY 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+A+ LCP +F+P F +Y S+ + S+DEAYLD+T++ +
Sbjct: 61 MAKTLCPHGVFLPVRFQRYREVSEKVFDILYSVTDIVEPLSIDEAYLDVTDIDKNPE--- 117
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
+IA+E++ VY GLT SAGV+ N+ LAK+ SD NKP+G V+ D V + L
Sbjct: 118 -DIAKEIKEKVYMTTGLTVSAGVSYNKFLAKIASDWNKPDGLMVITED--MVPDILRPLS 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGS-LLCAVFSHSTADFFLSVGLGLGSTNTP 338
+ K+ GIGK + L+ + G+ +++L+ L +F + + + G+ S
Sbjct: 175 VSKVYGIGKKSSERLKKI-GVEKVDDLLKLSQDELRNIFGKYGKEIYDRIR-GIDSRPVE 232
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R KSI E T T D LL + L A ++S++++ EGL RT+T+K+KT++F V
Sbjct: 233 TYRETKSIGKETTLKKDTSDVDLLLKYLRGFANIVSSELKSEGLYCRTVTVKIKTSNFIV 292
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVRAPS 449
TR+ TL +YI +DI A S+ +A++ +RLIGL V+ + K++ S
Sbjct: 293 HTRSRTLNEYIDLPDDIYSVAESIFKEAKIIQPVRLIGLSVSNLSAIKIKQLS 345
>gi|300773786|ref|ZP_07083655.1| DNA-directed DNA polymerase IV [Sphingobacterium spiritivorum ATCC
33861]
gi|300759957|gb|EFK56784.1| DNA-directed DNA polymerase IV [Sphingobacterium spiritivorum ATCC
33861]
Length = 359
Score = 206 bits (523), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 140/370 (37%), Positives = 209/370 (56%), Gaps = 24/370 (6%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMP 157
++ R +H+DMDAFYA+VE P L+GKP+AVG ++ TA+YEAR++GV++AM
Sbjct: 2 EIQRKIIHLDMDAFYASVEQRDFPELRGKPLAVGGSPDGRGVVATASYEARKYGVKSAMS 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A +LCP+LIF F Y S R++F +Y SLDEAYLD+TE ++GI
Sbjct: 62 SRQALQLCPQLIFTRPRFDVYKEVSQQIRQIFLRYTDLIEPLSLDEAYLDVTE--DKQGI 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S I+IA +++ + EE LT SAGV+ N+ +AK+ SDINKP+G F+ P+ V+ F+
Sbjct: 120 GSAIDIARQIKQEIREELNLTVSAGVSVNKFVAKIASDINKPDGLTFIGPSK---VVAFM 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPI K G+GKVT ++ + GI+ +M Q T FF ++ G+ +
Sbjct: 177 EHLPIEKFFGVGKVTASKMKKL-GIHRGADMKQWTQEALTRHFGKTGKFFYNIVRGVDNR 235
Query: 336 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
R KSIS E TF+ D +L L E++ L+ + + L G+T+TLK+K +
Sbjct: 236 PVQPNRQTKSISVEDTFAQDIADLQVLEDILKELSGRLAKRLNAKQLAGKTVTLKVKFSD 295
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVTQF-NEDKVRAPS 449
F TR++T + ++ E + + AS LL AE+ V RL+G+ V+ F ED P
Sbjct: 296 FSQATRSMTSLEVVTGEEVLYQIASELLNKVSLAEMKV--RLLGVGVSNFTGED----PD 349
Query: 450 DPTQKTLTNF 459
+ LT F
Sbjct: 350 QQINRQLTLF 359
>gi|398825840|ref|ZP_10584115.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. YR681]
gi|398222485|gb|EJN08859.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. YR681]
Length = 366
Score = 206 bits (523), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 128/349 (36%), Positives = 199/349 (57%), Gaps = 20/349 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG + ++ A+YEAR+FGVR+AMP A
Sbjct: 15 RKIIHIDMDAFYASVEQRDNPELRGKPVAVGGSAERGVVAAASYEARKFGVRSAMPSVTA 74
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFV F Y S R++F ++ P SLDEAYLD+TE + GI
Sbjct: 75 KRQCPDLIFVRPRFEVYKAISRQIREIFAEHTPVIEPLSLDEAYLDVTE-----NLQGIP 129
Query: 222 IAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
+A + +R + E GL SAG++ N+ LAK+ SD KPNGQ+V+ + F+ +
Sbjct: 130 LARDVALRIRDKIKAETGLNASAGISYNKFLAKLASDHRKPNGQYVISPEMGP--AFVET 187
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
LP+ K GIG T + + G+ T ++ Q + A F S A ++ + G+
Sbjct: 188 LPVGKFHGIGPATAAKM-NALGLFTGLDIRNQTLEFMNANFGKSGA-YYYWISRGVDERP 245
Query: 337 TPQARFRKSISSERTFSVTEDKA-LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKSI +E TFS D L +L + + + + G RGRT+TLK+K A F
Sbjct: 246 VRANRIRKSIGAETTFSTDLDTFDALAAELRPLVDKVWRHCETSGNRGRTVTLKVKFADF 305
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 442
E+ TR+ ++ ++ +++ + A LL+ E+P+ S+RL+G+ ++ +
Sbjct: 306 EIVTRSRSVPAPVAGRDELERLACGLLEVEMPLPKSVRLLGVSLSSLQD 354
>gi|170755759|ref|YP_001782423.1| DNA polymerase IV [Clostridium botulinum B1 str. Okra]
gi|429244890|ref|ZP_19208309.1| DNA polymerase IV [Clostridium botulinum CFSAN001628]
gi|169120971|gb|ACA44807.1| DNA polymerase IV [Clostridium botulinum B1 str. Okra]
gi|428758080|gb|EKX80533.1| DNA polymerase IV [Clostridium botulinum CFSAN001628]
Length = 349
Score = 206 bits (523), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 126/350 (36%), Positives = 196/350 (56%), Gaps = 14/350 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE + N L+GKP+ VG + ++ TA+YEAR++GV +AMP F
Sbjct: 1 MDRVIIHVDMDAFFASVEQMDNKKLRGKPVIVGGIGERGVVSTASYEARKYGVHSAMPVF 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
IA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 61 IAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEE----P 116
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ D + + + LP
Sbjct: 117 IKVAEHIKKKVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQDMIP--SILMPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGSTNTP 338
I KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 175 INKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDYREVK 232
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKSI E T +K + + L + + +S ++ K G+T+T+K+KT++F+
Sbjct: 233 VSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGKTVTVKIKTSNFQT 292
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 446
TR+ T+ YI ++I A +L +RLIGL V+ E+K++
Sbjct: 293 HTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGENKIK 342
>gi|22095624|sp|Q92XH8.2|DPO42_RHIME RecName: Full=DNA polymerase IV 2; Short=Pol IV 2
Length = 354
Score = 206 bits (523), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 127/345 (36%), Positives = 189/345 (54%), Gaps = 14/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEAR+FGV +AMP A
Sbjct: 2 RKIIHIDMDAFYASVEQRDNPELRGKPVAVGYPEARGVVAAASYEARKFGVHSAMPSVTA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CPELIFVP F Y S + +F +Y P SLDEAYLD+TE R ++ E
Sbjct: 62 KRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTENFRGLKLA-TE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAEE+R + E LT SAGV+ N+ LAK+ SD KP+G FV+ F+ +LP++
Sbjct: 121 IAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKHGP--DFVQALPVK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
K G+G T ++ + GI T ++ + + +F + G+ R
Sbjct: 179 KFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDERKVKPDR 237
Query: 342 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRGRTLTLKLKTASFEVR 398
RKSI +E TF ED L A + ++ + G+RG+T+TLK+K A F
Sbjct: 238 IRKSIGAEDTFR--EDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTLKVKWADFTQI 295
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
TR+ T+ I+S ++ + A +LL P +RL+G+ ++ +
Sbjct: 296 TRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVTLSSLD 340
>gi|326389369|ref|ZP_08210937.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus JW 200]
gi|392939169|ref|ZP_10304813.1| LOW QUALITY PROTEIN: nucleotidyltransferase/DNA polymerase involved
in DNA repair [Thermoanaerobacter siderophilus SR4]
gi|325994732|gb|EGD53156.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus JW 200]
gi|392290919|gb|EIV99362.1| LOW QUALITY PROTEIN: nucleotidyltransferase/DNA polymerase involved
in DNA repair [Thermoanaerobacter siderophilus SR4]
Length = 389
Score = 206 bits (523), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 128/351 (36%), Positives = 197/351 (56%), Gaps = 26/351 (7%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE NP +GKP+ +G +S ++ T +YEAR++G+ +AMP +
Sbjct: 1 MKRKIIHVDMDAFFASVEQHDNPEYRGKPVIIGGLSERGVVSTCSYEARKYGIHSAMPMY 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+ARKLCP IF+ +Y S + P S+DEAYLD+T + + I
Sbjct: 61 MARKLCPHGIFLSVRRKRYEEVSAQIFNILYSITPLVEPVSIDEAYLDVTYIDKNPEI-- 118
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IA E++ V E GLT SAGV+ N+ LAK+ SD NKP+G V+ D + + LP
Sbjct: 119 --IALEIKKKVKETTGLTISAGVSYNKFLAKLASDWNKPDGFMVITEDMIP--DILKPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-------GL 332
+ K+ GIG+ +E L+ GINT +++L+ + S + F +GL G+
Sbjct: 175 VSKVYGIGEKSEQKLK-AMGINTIDDLLK-------LSQESLIEIFGKLGLEIYNRIRGI 226
Query: 333 GSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
R KSI E+T T+DK LL + ++++S ++ +E L RT+T+K+K
Sbjct: 227 DERPVETMREIKSIGKEKTLEKDTKDKKLLLHYVKLFSDIISEELVRERLYARTVTVKIK 286
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFN 441
T F V T++ TL KYI EDI A ++++ +L +RLIGL V+ +
Sbjct: 287 TPDFAVHTKSKTLNKYIRLGEDIYDVAYEIIESLKLDQYIRLIGLSVSNLS 337
>gi|146338544|ref|YP_001203592.1| DNA polymerase IV [Bradyrhizobium sp. ORS 278]
gi|146191350|emb|CAL75355.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. ORS 278]
Length = 368
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 128/358 (35%), Positives = 195/358 (54%), Gaps = 38/358 (10%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+G+P+AVG ++ A+YEAR+FGVR+AMP A
Sbjct: 16 RKIIHIDMDAFYASVEQRDNPELRGRPVAVGGSRERGVVAAASYEARKFGVRSAMPSMTA 75
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI- 220
++LCP+LIFV F Y S R +F ++ P SLDEAYLD+T+ + GI
Sbjct: 76 KRLCPDLIFVKPRFEVYKAISQQIRAIFAEHTPIIEPLSLDEAYLDVTD-----NLQGIP 130
Query: 221 ---EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
+IA ++R + E GL SAG++ N+ LAK+ SD KPNGQ+V+ + A F+
Sbjct: 131 LARDIALQIRARIKAETGLNASAGISYNKFLAKLASDHRKPNGQYVISPETGA--AFVEG 188
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ + GIG T + GI+T ++ + ++ + G+
Sbjct: 189 LPVGRFHGIGPATAAKF-NALGIHTGLDIRNQTLPFLQQHFGKAGSYYYWISRGIDHRPV 247
Query: 338 PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK-----------EGLRGRTL 386
R RKSI +E TF+ L E E ++A++Q G RGRT+
Sbjct: 248 RANRIRKSIGAENTFAT---------DLIEF-EPMAAELQPLIDKVWRHCDATGNRGRTV 297
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 442
TLK+K A F+V TR+ ++ +SS ++ + + LL+AELP+ +RL+G+ ++ E
Sbjct: 298 TLKVKFADFDVITRSRSVATAVSSRAELERLSLALLQAELPLPKPVRLLGVSLSSLQE 355
>gi|167645987|ref|YP_001683650.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
gi|167348417|gb|ABZ71152.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
Length = 373
Score = 205 bits (522), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 126/350 (36%), Positives = 195/350 (55%), Gaps = 20/350 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFI 160
+R +H+DMDAFYA+VE +PSL+G+P+AVG + ++ A+YEAR+FGVR+AMP
Sbjct: 4 ARKIIHIDMDAFYASVEQRDDPSLRGRPLAVGHGARRGVVAAASYEARKFGVRSAMPSTT 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 219
A CP+LIFVP F Y S +F Y SLDEAYLD+T RG++
Sbjct: 64 ALAKCPQLIFVPPRFEVYKAVSRQIHAIFADYTDLIEPLSLDEAYLDVT--ANRRGLATA 121
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
+ A E+R + E GLT SAG++ N+ LAK+ SD KPNGQFV+P + F+ +LP
Sbjct: 122 TDTALEIRARILETTGLTASAGISYNKFLAKLASDQRKPNGQFVVPPGKGE--AFVQTLP 179
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
I + G+G VTE ++ + I+T E++ ++ + ++ ++ G
Sbjct: 180 IGRFYGVGAVTEAKMKSL-DIHTGEDLHRQSLAFLQQHFGKSGPWYYAIARGEDHRRVNP 238
Query: 340 ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD-----MQKEGLRGRTLTLKLKTAS 394
R RKS SE TF D+ + + E + AD QK G R RT+T+K+K A
Sbjct: 239 DRVRKSSGSETTF----DQDHIAPEPIEAGVLAMADDVWAWCQKTGARARTVTVKIKWAD 294
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQFNE 442
F+ TR+ +L I+ E + + L+++ P + +RL+G+ ++ F++
Sbjct: 295 FQQATRSRSLPSPIADHETLRRTGLDLIRSVYPPRMGIRLVGVTLSNFDQ 344
>gi|220905578|ref|YP_002480890.1| DNA-directed DNA polymerase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869877|gb|ACL50212.1| DNA-directed DNA polymerase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 426
Score = 205 bits (522), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 133/353 (37%), Positives = 199/353 (56%), Gaps = 36/353 (10%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKL 164
+H+DMDAF+A+VE + NP L+G+P+ VG S ++ T +YEAR FGV +AMP +AR+L
Sbjct: 3 IHIDMDAFFASVEQMDNPDLRGRPVIVGGSSDRGVVSTCSYEARTFGVHSAMPMVVARRL 62
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI-EIA 223
CP+ + V + +Y S + P AS+DEAY+D T + ER + E+
Sbjct: 63 CPQAVIVRGRYQRYAELSHAIMSALKDFSPLVEPASVDEAYMDATGL--ERLFGPLEELV 120
Query: 224 EELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRK 282
++T + + GLTCS G AP + LAK+CSD+NKP+G F+L + M F+ +LP+ +
Sbjct: 121 AGIKTRIVDVTGGLTCSVGAAPVKFLAKICSDVNKPDGVFILRQENMD--AFLCALPVGR 178
Query: 283 IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF----FLSVGLGL------ 332
I G+GK T L+D+ G+ T ++ + DF F GL L
Sbjct: 179 IPGVGKRTVQSLQDL-GVRTVAQL-----------RRFSPDFMERRFGKWGLALYERAQG 226
Query: 333 -GSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 390
S R KS S+E TF+ T D+ L R L AE + + +++ G RGRT+TLK+
Sbjct: 227 RDSRKVETEREAKSESAECTFAEDTRDRDFLQRMLMAHAERVGSSLRRHGYRGRTITLKV 286
Query: 391 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
K F TR+ TL++ +S++E I + LL AELP+ +RLIGL V+ F+
Sbjct: 287 KFCDFRQITRSRTLEEAVSATETIFETGCRLL-AELPLPQPVRLIGLGVSGFD 338
>gi|433615571|ref|YP_007192366.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sinorhizobium meliloti GR4]
gi|429553818|gb|AGA08767.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sinorhizobium meliloti GR4]
Length = 369
Score = 205 bits (522), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 127/345 (36%), Positives = 189/345 (54%), Gaps = 14/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEAR+FGV +AMP A
Sbjct: 17 RKIIHIDMDAFYASVEQRDNPELRGKPVAVGYPEARGVVAAASYEARKFGVHSAMPSVTA 76
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CPELIFVP F Y S + +F +Y P SLDEAYLD+TE R ++ E
Sbjct: 77 KRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTENFRGLKLA-TE 135
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAEE+R + E LT SAGV+ N+ LAK+ SD KP+G FV+ F+ +LP++
Sbjct: 136 IAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKHGP--DFVQALPVK 193
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
K G+G T ++ + GI T ++ + + +F + G+ R
Sbjct: 194 KFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDEREVKPDR 252
Query: 342 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRGRTLTLKLKTASFEVR 398
RKSI +E TF ED L A + ++ + G+RG+T+TLK+K A F
Sbjct: 253 IRKSIGAEDTFR--EDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTLKVKWADFTQI 310
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
TR+ T+ I+S ++ + A +LL P +RL+G+ ++ +
Sbjct: 311 TRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVTLSSLD 355
>gi|58580386|ref|YP_199402.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|188578682|ref|YP_001915611.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae PXO99A]
gi|58424980|gb|AAW74017.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|188523134|gb|ACD61079.1| ImpB/MucB/SamB family [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 369
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 138/349 (39%), Positives = 198/349 (56%), Gaps = 18/349 (5%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGF 159
L R +HVDMDAFYA+VE +P L+GKP+ V G S++C A+YEAR FG+R+AMP
Sbjct: 10 LMRKIVHVDMDAFYASVEQRDDPGLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAV 69
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS- 218
A +LCP IFVP DF +Y S R++F ++ SLDEAYLD+T+ + G+
Sbjct: 70 RAERLCPNAIFVPPDFVRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQA--KTGMQL 127
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R + F+ L
Sbjct: 128 ATEIAQLIRTQIREETELTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--IDAFLLPL 185
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
+ +I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 186 KVNRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFG-SFGQSLYRRARGIDERPV 243
Query: 338 PQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F
Sbjct: 244 EPDQDVQSVSSEDTFS--EDLALDALDTHILRLAEKTWLATRRTERIGRTVVLKLKTSNF 301
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFN 441
+ TR+ T ++ S E + + A L + ELP RL+G+ ++ F+
Sbjct: 302 RILTRSCTPEQPPVSQEALAQIALALTRRVELPAQTRYRLVGVGLSGFS 350
>gi|383775145|ref|YP_005454214.1| DNA polymerase IV [Bradyrhizobium sp. S23321]
gi|381363272|dbj|BAL80102.1| DNA polymerase IV [Bradyrhizobium sp. S23321]
Length = 366
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 131/349 (37%), Positives = 197/349 (56%), Gaps = 22/349 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG + ++ A+YEAR FGVR+AMP A
Sbjct: 15 RKIIHIDMDAFYASVEQRDNPELRGKPVAVGGSAERGVVAAASYEARAFGVRSAMPSVTA 74
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
R+ CP+LIFV F Y S R +F ++ P SLDEAYLD+TE + GI
Sbjct: 75 RRQCPDLIFVKPRFEVYKAISRQIRDIFAEHTPVIEPLSLDEAYLDVTE-----NLQGIP 129
Query: 222 IAEE----LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
+A + +R ++ E GL SAG++ N+ LAK+ SD KPNGQFV+ + F+ +
Sbjct: 130 LARDVALRIRETIKAETGLNASAGISYNKFLAKLASDHRKPNGQFVISPEMGP--AFVET 187
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
LP+ K GIG T + + G+ T ++ Q + A F S A ++ + G+
Sbjct: 188 LPVGKFHGIGPATSAKM-NALGLFTGLDIRNQSLEFMNANFGKSGA-YYYWISRGVDERP 245
Query: 337 TPQARFRKSISSERTFSVTED--KALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
R RKSI +E TF D AL+ +L + + + + G RGRT+TLK+K A
Sbjct: 246 VRANRVRKSIGAETTFQADLDVFDALII-ELRPLVDKVWRHCEATGNRGRTVTLKIKFAD 304
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 441
FE+ TR+ +L +S +++ + A LL+ E+P+ +RL+G+ ++
Sbjct: 305 FEIITRSRSLPAPVSGRDELERLACGLLEVEMPLPKRVRLLGVSLSALQ 353
>gi|193782767|ref|NP_436520.4| DNA polymerase IV [Sinorhizobium meliloti 1021]
gi|193073223|gb|AAK65932.2| Nucleotidyltransferase/DNA polymerase [Sinorhizobium meliloti 1021]
Length = 369
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 127/345 (36%), Positives = 189/345 (54%), Gaps = 14/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEAR+FGV +AMP A
Sbjct: 17 RKIIHIDMDAFYASVEQRDNPELRGKPVAVGYPEARGVVAAASYEARKFGVHSAMPSVTA 76
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CPELIFVP F Y S + +F +Y P SLDEAYLD+TE R ++ E
Sbjct: 77 KRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTENFRGLKLA-TE 135
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAEE+R + E LT SAGV+ N+ LAK+ SD KP+G FV+ F+ +LP++
Sbjct: 136 IAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKHGP--DFVQALPVK 193
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
K G+G T ++ + GI T ++ + + +F + G+ R
Sbjct: 194 KFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDERKVKPDR 252
Query: 342 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRGRTLTLKLKTASFEVR 398
RKSI +E TF ED L A + ++ + G+RG+T+TLK+K A F
Sbjct: 253 IRKSIGAEDTFR--EDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTLKVKWADFTQI 310
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
TR+ T+ I+S ++ + A +LL P +RL+G+ ++ +
Sbjct: 311 TRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVTLSSLD 355
>gi|224091441|ref|XP_002187639.1| PREDICTED: DNA polymerase kappa-like, partial [Taeniopygia guttata]
Length = 633
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 169/257 (65%), Gaps = 16/257 (6%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAK+CSD NKPNGQ+ + +R+AV+ F+
Sbjct: 47 GTSAEEVVKEIRFRIEQKTQLTASAGIAPNTMLAKMCSDHNKPNGQYRISPERLAVLDFL 106
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS + FL + LGLGST
Sbjct: 107 KDLPIRKVPGIGKVTEKMLK-ALGIVTCSELYQQRALLSLLFSEVSWRNFLDISLGLGST 165
Query: 336 NTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
+ + RKS+S+ERTFS ED+ L R E+ L+ D+QKEGL+G+T+TLKLK
Sbjct: 166 HLEKDGERKSMSTERTFSEINTAEDQYSLCR---ELCRDLAQDLQKEGLKGKTVTLKLKN 222
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVR 446
+FEV+TRA T+ +S+ E+I A LL E+ P+ +RL+G+RV+ F ++ +
Sbjct: 223 VNFEVKTRASTVLSSVSTEEEIFTVAKDLLGTEINSVAPHPLRIRLMGVRVSGFLTEEEK 282
Query: 447 APSDPTQKTLTNFMTSG 463
QK++T+F+ SG
Sbjct: 283 KYQ---QKSITSFLKSG 296
>gi|365886913|ref|ZP_09425808.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3809]
gi|365337547|emb|CCD98339.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3809]
Length = 368
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 197/349 (56%), Gaps = 20/349 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+G+P+AVG ++ A+YEAR+FGVR+AMP A
Sbjct: 16 RKIIHIDMDAFYASVEQRDNPDLRGRPVAVGGSRERGVVAAASYEARKFGVRSAMPSVTA 75
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI- 220
++LCP+LIFV F Y S R +F ++ P SLDEAYLD+T+ + GI
Sbjct: 76 KRLCPDLIFVKPRFEVYKAISQQIRAIFAEHTPIIEPLSLDEAYLDVTD-----NLQGIP 130
Query: 221 ---EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
+IA ++R + E GL SAG++ N+ LAK+ SD KPNGQ+V+ + A F+ S
Sbjct: 131 LARDIALQIRARIKAETGLNASAGISYNKFLAKLASDHRKPNGQYVISPEMGA--AFVES 188
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ + GIG T + GI+T ++ + ++ + G+
Sbjct: 189 LPVGRFHGIGPATAAKFNGL-GIHTGLDIRNQTLPFLQHHFGKAGSYYYWISRGIDHRPV 247
Query: 338 PQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKSI +E TF+ +TE + + +L + + + + G RGRT+TL++K A F
Sbjct: 248 RANRIRKSIGAENTFATDLTEFEPMAA-ELQPLIDKVWRHCEATGNRGRTVTLRVKFADF 306
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 442
++ TR+ ++ +SS ++ + LL+AE+PV +RL+G+ ++ E
Sbjct: 307 DMITRSRSVATAVSSRAELEHLSLALLQAEMPVKKPVRLLGVSLSSLRE 355
>gi|93117313|gb|ABE99574.1| DinB [Neisseria meningitidis]
Length = 336
Score = 205 bits (521), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 188/331 (56%), Gaps = 16/331 (4%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERECLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELP 427
+ TR +T + +L+ A +L+ A +P
Sbjct: 295 IITRTLTYSSVLPDCTALLQAAQMLM-ARVP 324
>gi|93117305|gb|ABE99570.1| DinB [Neisseria meningitidis H44/76]
Length = 335
Score = 205 bits (521), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 122/326 (37%), Positives = 186/326 (57%), Gaps = 15/326 (4%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLL 422
+ TR +T + +L+ A +L+
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLM 320
>gi|421766181|ref|ZP_16202958.1| DNA polymerase IV [Lactococcus garvieae DCC43]
gi|407625350|gb|EKF52056.1| DNA polymerase IV [Lactococcus garvieae DCC43]
Length = 365
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 204/371 (54%), Gaps = 29/371 (7%)
Query: 94 ILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKP-------MAVGTMSMICTANYE 146
+L D SR +H+DMDAF+A+VE NP LKGKP M G ++ T +YE
Sbjct: 1 MLTFPLINDTSRKIIHIDMDAFFASVEVRDNPKLKGKPVVIARNPMETGGRGVVSTCSYE 60
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
AR FG+ +AM A LCP+ IF+ ++ KY S R++F +Y AAS+DEAYL
Sbjct: 61 ARVFGIHSAMSAKEAYDLCPQAIFISGNYEKYRAVSKQVREIFNRYTEEVEAASIDEAYL 120
Query: 207 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 265
D+TE + S I+IA+ ++ +Y E GLTCSAGV+ N+ LAK+ SD KP+G ++P
Sbjct: 121 DVTE-NKIGSTSAIKIAKLIQHDIYVELGLTCSAGVSYNKFLAKIASDYEKPHGLTVIMP 179
Query: 266 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADF 324
+D F++ LP+ K G+GK T L D+ GI ++ + L L F +
Sbjct: 180 DD---AKEFLAELPVEKFHGVGKATGAKLHDM-GIFKGTDIQKVDPLDLADRFGIYGWNL 235
Query: 325 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQK 378
FL G+ + +R RKS+ ERT+ LLY ++LA ++E +S ++ +
Sbjct: 236 FLKAN-GIHDSAVVTSRQRKSVGKERTYG-----KLLYQIEDIKQELANLSERVSRNLNQ 289
Query: 379 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGL 435
L G T+ LKL+ + F T+ L + IS ++DI A LL+ + + +RL+G+
Sbjct: 290 HQLTGDTVVLKLRYSDFRTLTKRKKLAEKISKADDIAHTAHDLLEEIDYDDTLGVRLLGV 349
Query: 436 RVTQFNEDKVR 446
+T F +++R
Sbjct: 350 TLTGFGVEELR 360
>gi|168179226|ref|ZP_02613890.1| DNA polymerase IV [Clostridium botulinum NCTC 2916]
gi|182669759|gb|EDT81735.1| DNA polymerase IV [Clostridium botulinum NCTC 2916]
Length = 349
Score = 204 bits (520), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 126/350 (36%), Positives = 196/350 (56%), Gaps = 14/350 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE + N LKGKP+ VG + ++ TA+YEAR++GV +AMP F
Sbjct: 1 MDRVIIHVDMDAFFASVEQMDNKKLKGKPVIVGGIGERGVVSTASYEARKYGVHSAMPVF 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
IA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 61 IAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEE----P 116
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ D + + + LP
Sbjct: 117 IKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQDMIP--SILMPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGSTNTP 338
I KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 175 INKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDYREVK 232
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKSI E T +K + + L + + +S ++ K G+T+T+K+KT++F+
Sbjct: 233 VSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGKTVTVKIKTSNFQT 292
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 446
TR+ T+ YI ++I A +L +RLIGL V+ ++K++
Sbjct: 293 HTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNLGKNKIK 342
>gi|384531775|ref|YP_005717379.1| DNA-directed DNA polymerase [Sinorhizobium meliloti BL225C]
gi|333813951|gb|AEG06619.1| DNA-directed DNA polymerase [Sinorhizobium meliloti BL225C]
Length = 369
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 126/345 (36%), Positives = 189/345 (54%), Gaps = 14/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEAR+FGV +AMP A
Sbjct: 17 RKIIHIDMDAFYASVEQRDNPELRGKPVAVGYPEARGVVAAASYEARKFGVHSAMPSVTA 76
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CPELIFVP F Y S + +F +Y P SLDEAYLD+TE R ++ E
Sbjct: 77 KRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTENFRGLKLA-TE 135
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAEE+R + E LT SAG++ N+ LAK+ SD KP+G FV+ F+ +LP++
Sbjct: 136 IAEEIRGRIRAETHLTASAGISYNKFLAKMASDQRKPDGLFVITPKHGP--DFVQALPVK 193
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
K G+G T ++ + GI T ++ + + +F + G+ R
Sbjct: 194 KFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDEREVKPDR 252
Query: 342 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRGRTLTLKLKTASFEVR 398
RKSI +E TF ED L A + ++ + G+RG+T+TLK+K A F
Sbjct: 253 IRKSIGAEDTFR--EDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTLKVKWADFTQI 310
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
TR+ T+ I+S ++ + A +LL P +RL+G+ ++ +
Sbjct: 311 TRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVTLSSLD 355
>gi|390990143|ref|ZP_10260433.1| ImpB/MucB/SamB family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372555108|emb|CCF67408.1| ImpB/MucB/SamB family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
Length = 359
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 134/347 (38%), Positives = 195/347 (56%), Gaps = 16/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARIFGIRSAMPAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T + G+
Sbjct: 62 ERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+ +RT + EE LT SAG+A N+ LAK+ SD KP+GQFV+ R V F+ L +
Sbjct: 120 EVAQLIRTQIREETQLTASAGIASNKFLAKIASDWRKPDGQFVIAPSR--VDAFLLPLKV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+I G+GKV + L GI T ++ Q+ S G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDERPVEPD 236
Query: 341 RFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 237 QEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRIL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 442
TR+ T ++ +S E + + A L + ELP RL+G+ + F++
Sbjct: 295 TRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGFSD 341
>gi|261364541|ref|ZP_05977424.1| DNA-directed DNA polymerase [Neisseria mucosa ATCC 25996]
gi|288567106|gb|EFC88666.1| DNA-directed DNA polymerase [Neisseria mucosa ATCC 25996]
Length = 352
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 126/346 (36%), Positives = 191/346 (55%), Gaps = 18/346 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LKG P+ V G S+IC A+YEAR+FG+ +AM A
Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGLPVVVAWEGARSVICAASYEARQFGLHSAMSVATA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + + E
Sbjct: 64 KRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTHNFKNIPYAS-E 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + +M F+ +LP+
Sbjct: 123 VATEIRAAIFAEIGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--IMAFLETLPLG 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 181 KIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERPV 235
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R+ + ++ ED +L L +AE L + ++ + + +TLKLKT F +
Sbjct: 236 KAERERLQISTEITLPEDLSLEQAGGHLPHLAEDLWRQITRKNVEAKGVTLKLKTHDFRI 295
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQF 440
TR++T + + +L A L++ P + RLIG+ V
Sbjct: 296 ITRSLTYSSVLPDIDALLCAAQTLMQRVPPQHEDAFRLIGIGVNHL 341
>gi|359398362|ref|ZP_09191383.1| DNA polymerase IV [Novosphingobium pentaromativorans US6-1]
gi|357600274|gb|EHJ61972.1| DNA polymerase IV [Novosphingobium pentaromativorans US6-1]
Length = 401
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 141/380 (37%), Positives = 201/380 (52%), Gaps = 21/380 (5%)
Query: 81 PVISHYQKVADKRILEL---EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM 137
PVI K R E E D R +HVDMDAF+A+VE +P L+GKP+AVG
Sbjct: 19 PVIGPISKTMSSRDGESGDGEEEADGLRKIIHVDMDAFFASVEQRDDPELRGKPVAVGGS 78
Query: 138 S---MICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDP 194
S ++ A+YEAR+FGVR+AMP A + CP LIF F Y S R +F +Y P
Sbjct: 79 SGRGVVAAASYEARKFGVRSAMPSARAARQCPGLIFRKPRFEVYREVSQQIRAIFHEYTP 138
Query: 195 NFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSD 254
+ SLDEAYLD+T + G S IAEE+R + E GLT SAGV+ N+ LAK+ SD
Sbjct: 139 HVEPLSLDEAYLDVTADLKGIG-SATRIAEEIRRRIRTETGLTASAGVSYNKFLAKLASD 197
Query: 255 INKPNGQFVL-PNDRMAVMTFISSLPIRKIGGIG-KVTEHILRDVFGINTCEEMLQKGSL 312
NKP+G V+ P + A F++ LP+R+ G+G + E + R GI T ++ +
Sbjct: 198 QNKPDGLCVIRPGEGAA---FVAGLPVRRFHGVGPRGAEKMAR--LGIETGADLRDRDIH 252
Query: 313 LCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKA---LLYRKLAEIA 369
S A++ G+ R RKS+ ERTF ED A L + I
Sbjct: 253 FLRQHFGSFAEYLYRAARGVDLRQVRANRPRKSVGGERTF--FEDIARADALRETMDSII 310
Query: 370 EMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELP 427
+++ +++ RGRT+TLKL+ A F TRA +L +++ E+ + LL LP
Sbjct: 311 DIVWDRIERAEARGRTVTLKLRYADFRTITRARSLPHFVTGKEEFGQIGHALLDDLMPLP 370
Query: 428 VSLRLIGLRVTQFNEDKVRA 447
+RL+GL ++ ++ A
Sbjct: 371 QPIRLMGLTLSALEREEAVA 390
>gi|149185736|ref|ZP_01864052.1| DNA polymerase IV [Erythrobacter sp. SD-21]
gi|148830956|gb|EDL49391.1| DNA polymerase IV [Erythrobacter sp. SD-21]
Length = 370
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 132/348 (37%), Positives = 194/348 (55%), Gaps = 14/348 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE NP L+GKP+AVG S ++ A+YEAR+FGV++AMP A
Sbjct: 16 RKIIHVDMDAFFASVEQRDNPDLRGKPVAVGGSSGRGVVAAASYEARKFGVKSAMPSVTA 75
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
++LCP+LIFV + F Y S R +F + SLDEAYLD+TE + GI S
Sbjct: 76 KRLCPDLIFVKSRFDAYREVSQQIRAIFRHHTDLVEPLSLDEAYLDVTE--DKLGIGSAT 133
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IAE +R + + LT SAGV+ N+ LAK+ SD NKP+G V+ A F+ SLP+
Sbjct: 134 RIAELIRQEIRAKTRLTASAGVSYNKFLAKLASDQNKPDGMCVIRPGEGA--DFVQSLPV 191
Query: 281 RKIGGIG-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
R+ G+G K E + D GI T E+ K S AD+ G+
Sbjct: 192 RRFHGVGPKGAEKM--DRLGIQTGAELAAKDIEWLRAHFGSFADYLYRAARGIDLRPVRS 249
Query: 340 ARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+R RKS+ ERTFS + L L +I +++ +++ +GRT+TLK+K F++
Sbjct: 250 SRIRKSVGGERTFSRDLSSGSELRETLEDIIDIVWGYIERAEAKGRTVTLKMKYIDFQIF 309
Query: 399 TRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNEDK 444
+RA T+ + I+ + LL+ LP+ +RL+GL +++ K
Sbjct: 310 SRAKTVDQPITDRAQFEALSRQLLEEVLPLPMPIRLMGLTLSKLEGGK 357
>gi|385855494|ref|YP_005902007.1| DNA polymerase IV [Neisseria meningitidis M01-240355]
gi|325204435|gb|ADY99888.1| DNA polymerase IV [Neisseria meningitidis M01-240355]
Length = 352
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 128/345 (37%), Positives = 193/345 (55%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+F + +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFELHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPYK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ +G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFDRGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>gi|398382571|ref|ZP_10540656.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sphingobium sp. AP49]
gi|397726677|gb|EJK87110.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Sphingobium sp. AP49]
Length = 364
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 140/345 (40%), Positives = 204/345 (59%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI---CTANYEARRFGVRAAMPGFI 160
+R +HVDMDAFYA+VE +PSL+GK +AVG T +YEAR+FGVR+AMPG
Sbjct: 8 TRKIIHVDMDAFYASVEQRDDPSLRGKAIAVGGGGPRGVVATCSYEARKFGVRSAMPGAR 67
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 219
AR+LCP+L+FV F Y S R +F ++ SLDEAYLD+T+ + GI S
Sbjct: 68 ARRLCPDLLFVKPRFEVYRAVSAQIRAIFGRFTDMVQPLSLDEAYLDVTQ--NKPGIASA 125
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSL 278
+A+E+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V+ P + A F++ +
Sbjct: 126 TLVAQEIRRLIREETGLTASAGVSYNKLIAKLASDQNKPDGLCVVRPAEGAA---FMAGM 182
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNT 337
P+R+I GIG VT + + GI T ++ + S L A F S+A F+ G
Sbjct: 183 PVRRIHGIGPVTAERMHKL-GIQTGADLRDRDLSFLQAQFG-SSALFYYRAARGEDDRPV 240
Query: 338 PQARFRKSISSERTF---SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
+ + RKS+S E TF VTE+ L +++ IA+ L + K GRT+ LK+K A
Sbjct: 241 HERQERKSVSVEDTFLEDLVTEEA--LVQEINRIADNLWNRIDKAQAYGRTVVLKVKFAD 298
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRV 437
F + TR+ + + S E +++ LL+A+LP+ + RL+GL V
Sbjct: 299 FRIITRSRSFTAPVRSLEQLMETGRGLLRAQLPLRIGARLLGLGV 343
>gi|385335758|ref|YP_005889705.1| DNA polymerase IV [Neisseria gonorrhoeae TCDC-NG08107]
gi|317164301|gb|ADV07842.1| DNA polymerase IV [Neisseria gonorrhoeae TCDC-NG08107]
Length = 368
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/347 (36%), Positives = 194/347 (55%), Gaps = 20/347 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LKG+P+ V G S+IC A+Y+AR+FG+ +AM A
Sbjct: 20 RKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYDARQFGLHSAMSVATA 79
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+ ++VP F Y S VF +Y S DEAYLD+T + +G E
Sbjct: 80 KRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSPDEAYLDVTRNFKNIPYAG-E 138
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 139 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPLG 196
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 197 KIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDEHPV 251
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F +
Sbjct: 252 KAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRI 311
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRVTQF 440
TR +T + +L+ A +L+ A +P + RLIG+ V +
Sbjct: 312 ITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGVGRL 357
>gi|456357588|dbj|BAM92033.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Agromonas oligotrophica S58]
Length = 357
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 128/353 (36%), Positives = 194/353 (54%), Gaps = 26/353 (7%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFI 160
+R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEARRFGVR+AMP
Sbjct: 4 TRKIIHIDMDAFYASVEQRDNPDLRGKPVAVGGSRERGVVAAASYEARRFGVRSAMPSVT 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++ CP+LIFV F Y S R +F ++ P SLDEAYLD+TE + GI
Sbjct: 64 AKRQCPDLIFVKPRFEVYKAISQQIRAIFAEHTPIIEPLSLDEAYLDVTE-----NLQGI 118
Query: 221 ----EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 276
+IA ++R + E L SAG++ N+ LAK+ SD KPNGQ+V+ + A F+
Sbjct: 119 PLARDIALQIRAKIKAETDLNASAGISYNKFLAKLASDHRKPNGQYVISPEMGA--AFVE 176
Query: 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
LP+ K GIG T + GI+T ++ + ++ + G+
Sbjct: 177 GLPVGKFHGIGPATTAKF-NALGIHTGLDIRNQTLPFLQQHFGKAGSYYYWISRGVDDRP 235
Query: 337 TPQARFRKSISSERTFS--VTE---DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
R RKS+ +E TFS +TE KA L + ++ A K GRT+TLK+K
Sbjct: 236 VRANRIRKSVGAENTFSTDLTEFEPMKAELLPLIDKVWRHCEATCNK----GRTVTLKVK 291
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 442
A FE+ TR+ ++ + S +D+ + + LL++E+P+ +RL+G+ ++ E
Sbjct: 292 FADFEIMTRSRSVASAVGSRDDLERLSVALLQSEMPLPKPVRLLGVSLSSLQE 344
>gi|325918965|ref|ZP_08181032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas vesicatoria ATCC 35937]
gi|325534810|gb|EGD06739.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Xanthomonas vesicatoria ATCC 35937]
Length = 359
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 136/348 (39%), Positives = 200/348 (57%), Gaps = 18/348 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPALRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP+ +FVP DF +Y S R++F ++ SLDEAYLD+T + G+
Sbjct: 62 ERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
EIA+ +RT + +E LT SAG+APN+ LAK+ SD KP+GQFV+ R V F+ L +
Sbjct: 120 EIAQLIRTQIRDETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAFLLPLKV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFG-SFGQSLYRRARGIDERPVEP 235
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 236 DQEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRI 293
Query: 398 RTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFNE 442
TR+ T ++ +S + + + A L + ELP RL+G+ ++ F++
Sbjct: 294 LTRSYTPEQPPASLDALAQIALALTRRVELPDETRYRLVGVGLSGFSD 341
>gi|421096936|ref|ZP_15557635.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str.
200901122]
gi|410800181|gb|EKS02242.1| ImpB/MucB/SamB family protein [Leptospira borgpetersenii str.
200901122]
Length = 362
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 188/325 (57%), Gaps = 13/325 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +HVDMDAFYA+VE P KGKP+ VG + S++ A+YEAR+FGVR+AMP
Sbjct: 4 RKIIHVDMDAFYASVEQRDFPEYKGKPLIVGGPPNSRSVVAAASYEARKFGVRSAMPCSK 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 219
A +L P+ IFV F Y SD R++F +Y SLDE YLD+T ++ I
Sbjct: 64 AAQLAPQAIFVSPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT--FNKKNIPFA 121
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSL 278
+ IA+E+R +++ GLT SAGV ++ +AK+ S+ NKPNG VLP+D V+TFI L
Sbjct: 122 VTIAKEIRAEIFKRTGLTASAGVGNSKFIAKLASEKNKPNGLVVVLPDD---VITFIDPL 178
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
P+ G+GKVT ++++ GI+T +++ K + T ++ + G
Sbjct: 179 PVSSFHGVGKVTAQKMKEL-GIHTGKDLRTKNIDELVQYFGKTGIYYYKISRGEDEREVE 237
Query: 339 QARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +E TF + D+ L ++L E+A + ++K G+TLTLK+K F +
Sbjct: 238 SCRERKSLGAENTFDQDKIDQEDLLQQLREVAVEVERRLKKRNFAGKTLTLKIKFQDFSL 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLL 422
+TR+ TL + I S++++ A+ L
Sbjct: 298 KTRSKTLSEPIFSADELYSIAAELF 322
>gi|93117315|gb|ABE99575.1| DinB [Neisseria meningitidis]
gi|93117317|gb|ABE99576.1| DinB [Neisseria meningitidis]
Length = 336
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 188/331 (56%), Gaps = 16/331 (4%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELP 427
+ TR +T + +L+ A +L+ A +P
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLM-ARVP 324
>gi|93117309|gb|ABE99572.1| DinB [Neisseria meningitidis]
Length = 335
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 188/331 (56%), Gaps = 16/331 (4%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELP 427
+ TR +T + +L+ A +L+ A +P
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLM-ARVP 324
>gi|194098704|ref|YP_002001766.1| DNA polymerase IV [Neisseria gonorrhoeae NCCP11945]
gi|193933994|gb|ACF29818.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
NCCP11945]
Length = 368
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/347 (36%), Positives = 193/347 (55%), Gaps = 20/347 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 20 RKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVATV 79
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+ ++VP F Y S VF +Y S DEAYLD+T + +G E
Sbjct: 80 KRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSPDEAYLDVTRNFKNIPYAG-E 138
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 139 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPLG 196
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 197 KIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDEHPV 251
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F +
Sbjct: 252 KAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRI 311
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRVTQF 440
TR +T + +L+ A +L+ A +P + RLIG+ V +
Sbjct: 312 ITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGVGRL 357
>gi|254493799|ref|ZP_05106970.1| impB/mucB/samB family protein [Neisseria gonorrhoeae 1291]
gi|268594856|ref|ZP_06129023.1| DNA polymerase IV [Neisseria gonorrhoeae 35/02]
gi|268596764|ref|ZP_06130931.1| DNA polymerase IV [Neisseria gonorrhoeae FA19]
gi|268601428|ref|ZP_06135595.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID18]
gi|268603758|ref|ZP_06137925.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID1]
gi|268682227|ref|ZP_06149089.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID332]
gi|291043738|ref|ZP_06569454.1| DNA polymerase IV [Neisseria gonorrhoeae DGI2]
gi|226512839|gb|EEH62184.1| impB/mucB/samB family protein [Neisseria gonorrhoeae 1291]
gi|268548245|gb|EEZ43663.1| DNA polymerase IV [Neisseria gonorrhoeae 35/02]
gi|268550552|gb|EEZ45571.1| DNA polymerase IV [Neisseria gonorrhoeae FA19]
gi|268585559|gb|EEZ50235.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID18]
gi|268587889|gb|EEZ52565.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID1]
gi|268622511|gb|EEZ54911.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID332]
gi|291012201|gb|EFE04190.1| DNA polymerase IV [Neisseria gonorrhoeae DGI2]
Length = 352
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/347 (36%), Positives = 194/347 (55%), Gaps = 20/347 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LKG+P+ V G S+IC A+Y+AR+FG+ +AM A
Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYDARQFGLHSAMSVATA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+ ++VP F Y S VF +Y S DEAYLD+T + +G E
Sbjct: 64 KRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSPDEAYLDVTRNFKNIPYAG-E 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPLG 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 181 KIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDEHPV 235
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F +
Sbjct: 236 KAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRI 295
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRVTQF 440
TR +T + +L+ A +L+ A +P + RLIG+ V +
Sbjct: 296 ITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGVGRL 341
>gi|84622350|ref|YP_449722.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|123523174|sp|Q2P7M9.1|DPO4_XANOM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|84366290|dbj|BAE67448.1| DNA polymerase IV [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 359
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 136/347 (39%), Positives = 197/347 (56%), Gaps = 18/347 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +P L+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPGLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP IFVP DF +Y S R++F ++ SLDEAYLD+T+ + G+
Sbjct: 62 ERLCPNAIFVPPDFVRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R + F+ L +
Sbjct: 120 EIAQLIRTQIREETELTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--IDAFLLPLKV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+I G+GKV + L GI T ++ L+ L A F + G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFGSFGQSLYRR-ARGIDERPVEP 235
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 236 DQDVQSVSSEDTFS--EDLALDALDTHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRI 293
Query: 398 RTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFN 441
TR+ T ++ S E + + A L + ELP RL+G+ ++ F+
Sbjct: 294 LTRSCTPEQPPVSQEALAQIALALTRRVELPAQTRYRLVGVGLSGFS 340
>gi|350566930|ref|ZP_08935549.1| DNA-directed DNA polymerase IV [Peptoniphilus indolicus ATCC 29427]
gi|348660650|gb|EGY77359.1| DNA-directed DNA polymerase IV [Peptoniphilus indolicus ATCC 29427]
Length = 349
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/339 (36%), Positives = 190/339 (56%), Gaps = 16/339 (4%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKL 164
+H+D+DAFYA+VE + NPSL GKP+ VG S +I TANYEAR++G+ +AMP FIA+
Sbjct: 7 IHIDIDAFYASVEEIDNPSLIGKPVVVGGRSNRGIITTANYEARKYGLHSAMPLFIAKNS 66
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 224
CP LI VP +Y S + Y S+DEAYLD++ ++ +++A+
Sbjct: 67 CPNLIIVPGRMQRYLEKSKEVFDILHSYTEILEKVSIDEAYLDLSN-----SLNSVDVAK 121
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLP-NDRMAVMTFISSLPIRKI 283
+++ V + GLT S G++ N+ LAK+ SD NKP+G V+ ND V + L I+K+
Sbjct: 122 QIKNEVKDRTGLTVSCGISYNKFLAKLASDWNKPDGLKVISKND---VPDILLPLDIKKV 178
Query: 284 GGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARF 342
G+G+ ++ LR++ GINT E+M Q L +F + + + G+ + R
Sbjct: 179 HGLGRKSQEKLRNI-GINTVEDMFQLDLEFLEKIFGKMGYEIYQRIR-GIDNRAVNSQRS 236
Query: 343 RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAV 402
RKS+ ERTF T DK +L +L + + LS D+ + L +TLTLKLKT F++ T +
Sbjct: 237 RKSLGVERTFPDTRDKYILLNRLIQYSVELSKDLSSKNLGFKTLTLKLKTFDFKINTHSK 296
Query: 403 TLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQF 440
T I+ ++I A L LRL+G+ +
Sbjct: 297 TYSHVINDKQEIENLALELFNTHYKGEKLRLMGISASNL 335
>gi|167644442|ref|YP_001682105.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
gi|167346872|gb|ABZ69607.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
Length = 375
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/350 (35%), Positives = 195/350 (55%), Gaps = 20/350 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE +PSL+G+P+AVG ++ A+YEAR+FGVR+AMP A
Sbjct: 7 RKIIHIDMDAFYASVEQRDDPSLRGRPLAVGHGAQRGVVAAASYEARKFGVRSAMPSTTA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
CP+L+FVP F Y S ++F Y SLDEAYLD+T RG+ +
Sbjct: 67 LAKCPQLVFVPPRFEVYKAVSRQIHEIFADYTDLIEPLSLDEAYLDVT--ANRRGLETAS 124
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E A+E+R + E GLT SAGV+ N+ LAK+ SD KPNGQFV+P + F+ +LPI
Sbjct: 125 ETAKEIRARILETTGLTASAGVSYNKFLAKLASDQRKPNGQFVVPPGKGE--AFVQTLPI 182
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+ G+G VTE ++ + G++T E++ ++ + ++ ++ G
Sbjct: 183 GRFHGVGAVTEAKMKRL-GVHTGEDLHRQSLAFLQQHFGRSGPWYYAIARGEDDRRVNPD 241
Query: 341 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD-----MQKEGLRGRTLTLKLKTASF 395
R RKS SE TF D+ + + E + AD K G R RT+T+K+K A F
Sbjct: 242 RVRKSSGSETTF----DQDHIAPEPIEAGVLAMADDVWAWCAKTGDRARTVTVKIKWADF 297
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQFNED 443
+ TR+ + ++ E + + + L+++ P + +RL+G+ ++ F ++
Sbjct: 298 QQATRSRSRPSPVADHETLRQTSLDLIRSVYPPRLGIRLVGVTLSNFEQE 347
>gi|399887391|ref|ZP_10773268.1| DNA polymerase IV [Clostridium arbusti SL206]
Length = 347
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 128/349 (36%), Positives = 201/349 (57%), Gaps = 14/349 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ + +HVDMDAF+A+VE + N SL+GKP+ VG +S ++ T +YEAR FGVR+AMP +
Sbjct: 1 MDKVIMHVDMDAFFASVEVMDNRSLRGKPVIVGGISERGVVATCSYEARAFGVRSAMPIY 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+A+ CP IF+P +Y S+ +F + P S+DEAYLD+T V ++
Sbjct: 61 MAKAKCPNGIFLPVRHERYREISNKVFNIFNEITPLIEPLSIDEAYLDLTHVNKD----S 116
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
+ IA ++ + +E GL S G++ N+ LAK+ SD NKPNG V+ + + F L
Sbjct: 117 LYIASFIKNRIKKETGLNISIGLSYNKFLAKLASDWNKPNGLKVIKKSDVPEILF--PLS 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
I K+ G+GK + L D+ GI T EE+ + + L +F + + + G+ +
Sbjct: 175 IDKVHGLGKKSVKKLNDI-GIFTVEELYKLPVNFLIDLFGKFGPEIYDRIR-GIDNREVK 232
Query: 339 QARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKSI E T + T+DK + + A ++ M+ + L G+ +T+K+KT+SF
Sbjct: 233 ILRERKSIGKETTLINDTDDKEDIKPYIKSFASSIANIMESKNLSGKNITIKIKTSSFIN 292
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKV 445
T++ TL YI+S EDI K A S+L K +L +RLIGL ++ F E ++
Sbjct: 293 HTKSKTLTHYINSEEDIYKEACSILEKLKLEEKIRLIGLSISSFKEKRI 341
>gi|389797332|ref|ZP_10200375.1| DNA polymerase IV [Rhodanobacter sp. 116-2]
gi|388447706|gb|EIM03706.1| DNA polymerase IV [Rhodanobacter sp. 116-2]
Length = 366
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 190/355 (53%), Gaps = 12/355 (3%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR LHVDMDAFYA+VE +PSL+GKP+AV G S++C A+YEAR FGVR+AMP
Sbjct: 13 SRKILHVDMDAFYASVEQRDDPSLRGKPVAVAWRGARSVVCAASYEARVFGVRSAMPAIR 72
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A +LCP+LIFVP DF +Y S R++F ++ SLDEAYLD+T G S
Sbjct: 73 AERLCPQLIFVPPDFVRYKAVSRQVREIFARHTELIEPLSLDEAYLDVTTTKSGLG-SAT 131
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
AE +R ++ +E LT SAGVAPN+ LAK+ SD KP+G FV+ + V F++ LP+
Sbjct: 132 ATAEAIREAIRKETRLTASAGVAPNKFLAKIASDFRKPDGLFVIRPQQ--VEAFLTPLPV 189
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
++ G+GKV E L GI T E+ + G+
Sbjct: 190 GRLPGVGKVMEAKL-AALGIATVGELRAFAQAELEQRFGRWGRRLHELAQGIDEHPVQPQ 248
Query: 341 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE-GLRGRTLTLKLKTASFEVRT 399
R +S+E TF L + ++AE A Q+E G RT+ LKLKTA F T
Sbjct: 249 RPTLQVSAEDTFEHDLRLDELEPHIRQLAEKAWAGHQREHGRVARTVVLKLKTADFHTLT 308
Query: 400 RAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF-NEDKVRAPSD 450
R++T S+ ++ A L + + P RL+G+ + F + D +A SD
Sbjct: 309 RSLTPPTRPMSAAELADIACALRERVQRPADSRYRLVGVGLAGFVDRDGYQAQSD 363
>gi|325860095|ref|ZP_08173221.1| DNA polymerase IV [Prevotella denticola CRIS 18C-A]
gi|325482380|gb|EGC85387.1| DNA polymerase IV [Prevotella denticola CRIS 18C-A]
Length = 359
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 202/368 (54%), Gaps = 30/368 (8%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE NP L+GKP+AVG ++ TA+YEAR FGV +AMP A
Sbjct: 2 RKIIHIDMDAFFASVEQRDNPGLRGKPIAVGFDGPRGVVSTASYEARPFGVHSAMPMAQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
R+ CP L+ VP F +Y S VF +Y SLDEA+LD+TE ++G+ +
Sbjct: 62 RRRCPHLVVVPCHFDRYKAVSRQIHAVFHEYTDLVEPISLDEAFLDVTE--NKKGMDLAV 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA E++ + + LT SAG++ N+LLAK+ SD+ KP+G F + DR + F+ SLP+
Sbjct: 120 DIAREIKQKILDRTSLTASAGISYNKLLAKISSDMRKPDGLFTVHPDR--ALGFVGSLPV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K+ G+G T + D+ G+ T E++ Q L VF + + G+ +
Sbjct: 178 EKLWGVGPKTAKRMHDM-GVFTGEQLRQVSRRHLVQVFG-KMGNIYYDFSRGIDNRPVVA 235
Query: 340 ARFRKSISSERTFSVTEDKAL-------LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
RKS+ ERTF ED + LY + E+ E L+ + G GRTLTLKLK
Sbjct: 236 VHERKSVGCERTF--LEDLHVGSKIIIELYHIVLELVERLA----RSGFEGRTLTLKLKW 289
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKA----ELPVSLRLIGLRVTQFNEDKVRAP 448
+ TR++T Q+ + + +DIL A LLK + PV RL+GL V+ +K +
Sbjct: 290 DATTQITRSLTQQRVLRTKDDILPLAKQLLKETSCHDRPV--RLMGLSVSSPLPEKEESS 347
Query: 449 SDPTQKTL 456
P + L
Sbjct: 348 HVPVEGLL 355
>gi|294507553|ref|YP_003571611.1| DNA polymerase IV [Salinibacter ruber M8]
gi|294343881|emb|CBH24659.1| DNA polymerase IV [Salinibacter ruber M8]
Length = 373
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/350 (37%), Positives = 190/350 (54%), Gaps = 15/350 (4%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPS-LKGKPMAVG---TMSMICTANYEARRFGVRAAMPGF 159
+R +HVDMDAFYA +E P GKP+AVG ++ TA+YEAR +GV +A P
Sbjct: 18 ARRIVHVDMDAFYAQIEQRDFPDRYAGKPIAVGGNPPRGVVQTASYEARPYGVHSAQPAV 77
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
A + CP+LIFV Y S RK+ +Y SLDEAYLD+TE R SG
Sbjct: 78 EADRKCPDLIFVSPRMDVYQEESKRIRKILRRYTDLVEPLSLDEAYLDVTEPKTGRP-SG 136
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IA LR +YEE GLT SAGV P + +AKV SD++KP+G V+ D M FI+ LP
Sbjct: 137 TLIARRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKPDGLTVVRPDEQ--MEFIAQLP 194
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
I K GIG VT +++ GI T ++ + F ++ +G
Sbjct: 195 IEKFHGIGPVTAAKMQE-LGIQTGADLQETPERTLIHHFGKRGRHFKTLAVGTDDRPVQP 253
Query: 340 ARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ +ERTF ED A + +L+ IAE ++ +++ +GRT+TLKLK+ +
Sbjct: 254 DRDRKSVGAERTFP--EDIARAETMLERLSPIAERVAQRLRQANRKGRTVTLKLKSHDHQ 311
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 444
V TR T+ + + + + ++ LL+ P+ +RL+G+ V+ E++
Sbjct: 312 VSTRQTTVDRPLRAEDALMTITERLLRRPHPLDEPVRLLGISVSSLTEEE 361
>gi|296446214|ref|ZP_06888161.1| DNA-directed DNA polymerase [Methylosinus trichosporium OB3b]
gi|296256251|gb|EFH03331.1| DNA-directed DNA polymerase [Methylosinus trichosporium OB3b]
Length = 357
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 192/347 (55%), Gaps = 20/347 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE +P+L+G+P+AVG+ ++ A+YEAR+FGVR+AMP A
Sbjct: 5 RKIIHIDMDAFYASVEQRDDPALRGRPVAVGSPRERGVVAAASYEARKFGVRSAMPSVTA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CPELIFVP F Y S R +F Y P SLDEAYLD+TE R+ S
Sbjct: 65 QRRCPELIFVPPRFDVYREVSRGLRAIFLDYTPLVEPLSLDEAYLDVTE-NRKAMASATR 123
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAEE+R + EE GLT SAGV+ N+ LAK+ SD KP+G FV+ +M +F++ L +
Sbjct: 124 IAEEIRARIKEETGLTASAGVSYNKFLAKLASDHRKPDGLFVV-TPQMG-PSFVADLAVG 181
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+ G+G T + + GI T ++ Q L F S A F+ + G+
Sbjct: 182 RFHGVGPATTKKM-NALGIETGRDLRAQSLEFLQRNFGKSGA-FYYGIARGVDERPVRPD 239
Query: 341 RFRKSISSERTFSV-----TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKSI +E TF+ E +A LA I + + Q+ GRT+T+K+K A F
Sbjct: 240 RIRKSIGAEVTFARDLHAHEEARA----ALAPIVARVWSHCQRAATSGRTVTVKVKYADF 295
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQF 440
TR TL ++ + ++ + A L+ P +RL+G+ ++
Sbjct: 296 RQITRRSTLAAPVAGAAELERSALALMHPLFPSPAGVRLLGVTLSSL 342
>gi|189044612|sp|Q1JF59.1|DPO4_STRPD RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94544652|gb|ABF34700.1| DNA polymerase IV [Streptococcus pyogenes MGAS10270]
Length = 364
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 209/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>gi|410465504|ref|ZP_11318750.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfovibrio magneticus str. Maddingley MBC34]
gi|409981467|gb|EKO38032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfovibrio magneticus str. Maddingley MBC34]
Length = 394
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 127/339 (37%), Positives = 190/339 (56%), Gaps = 8/339 (2%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTM--SMICTANYEARRFGVRAAMPGFIARKLC 165
LH+DMDAF+A+VE PSLKGKP+ +G ++ A+YEAR +GVR+AMP A++ C
Sbjct: 5 LHLDMDAFFASVEQHDEPSLKGKPVIIGHHHRGVVSAASYEARVYGVRSAMPVSEAKRRC 64
Query: 166 PELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEE 225
P +F+P + +Y+ S L ++ P AS+DEAY+DIT C+ +A
Sbjct: 65 PHGVFLPGNRRRYSEVSRLVMATLGRFSPLVEPASIDEAYVDITG-CQTLFGPPETMARA 123
Query: 226 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGG 285
++ ++ E GL CS GVAP + +AK+ SD +KP+G ++ + + F+ LP+ KI G
Sbjct: 124 MKAAIREATGLPCSVGVAPVKFIAKIASDYDKPDGLTIVTPE--TALDFLGPLPVSKIPG 181
Query: 286 IGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKS 345
+GK E L + GI ++ + A + GS R KS
Sbjct: 182 VGKRAEETLARL-GIRLVADIRRHEPEFLARHCGKWGLDLYNKAHARGSAVVSTDREAKS 240
Query: 346 ISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL 404
+S+E TF T D+ +L L + AE + ++++EGLRGRT+T+KLK +F TR+ TL
Sbjct: 241 VSAENTFEADTADRDILAAWLLKQAERVGRELRQEGLRGRTVTIKLKFNTFRQITRSRTL 300
Query: 405 QKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNE 442
+ +S I + A LL AE LP LRLIG+ V+QF E
Sbjct: 301 AEPTASDSAIFETARALLNAEPLPNPLRLIGVGVSQFGE 339
>gi|189912993|ref|YP_001964882.1| DNA polymerase IV [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|189913320|ref|YP_001964549.1| DNA polymerase IV [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|167777669|gb|ABZ95969.1| DNA damage-inducible protein DNA polymerase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167781388|gb|ABZ99685.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 358
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 128/356 (35%), Positives = 199/356 (55%), Gaps = 19/356 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMDAFYA+VE P ++GKP+ VG + ++C A+YEAR+FG+R+A+ +
Sbjct: 2 RKIIHIDMDAFYASVEQRDFPEMRGKPVVVGGSPHSRGVVCAASYEARKFGIRSAISCYQ 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP+ IF P F Y S R++F +Y SLDEAYLD+T ++
Sbjct: 62 AYKLCPDAIFTPPRFEVYKSVSKEIRRIFLEYTDLVEPLSLDEAYLDVTTNKPNLPLAST 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTFISSLP 279
IA+E+R ++E GLTCSAGVA N+ LAK+ S+ NKPNG + VLP + ++F+ LP
Sbjct: 122 -IAKEIRKKIWEGTGLTCSAGVATNKFLAKMASEKNKPNGLYVVLPGEE---LSFLDELP 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
+ + GIGK T + + G + +++ L S L F + F+ + G+
Sbjct: 178 LYQFFGIGKKTYEKFQHL-GFSKGKDLRLADESFLLKEFGKMGSVFY-RMARGIDDREVI 235
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R KSI E TF+ +ED + L +A+ L M K+ +G+TLTLK+K F V
Sbjct: 236 PFRDPKSIGVETTFTHDSEDFSYFLLTLETLAKELEGRMLKKNKKGKTLTLKVKFEDFTV 295
Query: 398 RTRAVTLQKYISSSEDILKHASVLL------KAELPVSLRLIGLRVTQFNEDKVRA 447
+ +++T ++++ + +S LL + P +RL+GL VT F E +++
Sbjct: 296 KQKSITSDSVFFLADNLFQQSSNLLANVWKDNFDPPKKIRLLGLSVTNFYEKEIKG 351
>gi|19746777|ref|NP_607913.1| DNA polymerase IV [Streptococcus pyogenes MGAS8232]
gi|24211640|sp|Q8NZI1.1|DPO4_STRP8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|19749010|gb|AAL98412.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
MGAS8232]
Length = 364
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 209/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>gi|325103858|ref|YP_004273512.1| DNA-directed DNA polymerase [Pedobacter saltans DSM 12145]
gi|324972706|gb|ADY51690.1| DNA-directed DNA polymerase [Pedobacter saltans DSM 12145]
Length = 366
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 128/354 (36%), Positives = 201/354 (56%), Gaps = 16/354 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +H+DMDAFYA+VE P L+GK +AVG ++ T +YEAR++GVR+AM
Sbjct: 10 RKIIHIDMDAFYASVEQRDFPELRGKAIAVGGSPDGRGVVATCSYEARKYGVRSAMSSRT 69
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP LIF F Y S R +F +Y SLDEAYLD+T+ + G S I
Sbjct: 70 AIKLCPHLIFTRPRFDVYKEVSSHIRSIFYRYTDIIEPLSLDEAYLDVTDDKQNIG-SAI 128
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 279
+IA++++ + +E LT SAG++ ++ +AK+ SD KP+G F+ P+ ++ FI +LP
Sbjct: 129 DIAKKIKQEIKDELDLTASAGISTSKFIAKIASDFQKPDGLTFIGPS---KIVPFIEALP 185
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
I K G+GKVT ++ + N + K + L F S FF + G+ + +
Sbjct: 186 IEKFFGVGKVTAAKMKKLGIFNGADLKKWKQNDLTKQFGKS-GKFFYEIVRGIDNRSVKP 244
Query: 340 ARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R KS+ +E TF + +D +L +L +++E +S + + +G+T+TLK+K + F
Sbjct: 245 NRISKSVGAEDTFENDIDDIEILNEELQKLSERVSRRLNDKEFKGKTMTLKVKFSDFTQI 304
Query: 399 TRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFNEDKVRAPSD 450
TR+ TL Y +S + I +HAS LL+ +RL+G+ V+ F +K P+D
Sbjct: 305 TRSTTLDFYTNSFDIIFEHASSLLEHVDREEKRIRLLGVSVSHFFHEK---PAD 355
>gi|393765264|ref|ZP_10353849.1| DNA-directed DNA polymerase [Methylobacterium sp. GXF4]
gi|392729263|gb|EIZ86543.1| DNA-directed DNA polymerase [Methylobacterium sp. GXF4]
Length = 360
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 135/354 (38%), Positives = 199/354 (56%), Gaps = 18/354 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE +P+L+G P+AVG ++ A+YEARRFGVR+AMP A
Sbjct: 8 RKIIHIDMDAFYASVEQRDDPALRGLPLAVGGSRERGVVMAASYEARRFGVRSAMPSATA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
R+LCP+L+FV F Y S+ R VF ++ P +LDEAYLD+TE G+ +
Sbjct: 68 RRLCPDLLFVKPRFEVYRAVSEEIRAVFARHTPVIEPVALDEAYLDVTENL--LGLPTAT 125
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+A+ +R + E GL SAGV+ N+ LAKV SD KP+ FV+ M F+++LPI
Sbjct: 126 AVAKAIRAEILERTGLVASAGVSYNKFLAKVASDYRKPDALFVI-TPAMG-PDFVAALPI 183
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+ G+G VTE ++ + GI T ++ L F + A ++ +V GL
Sbjct: 184 GRFHGVGPVTEAKMKRL-GIETGADLRAWDPDRLREAFGSAGA-YYHAVARGLDMRPVRA 241
Query: 340 ARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKSI +E TFS ED A +L +LA + + + A +G+R RT+TLKLK + F
Sbjct: 242 HRVRKSIGAETTFS--EDTAAFEILAARLAPLFDKVWAGADAKGMRARTVTLKLKFSDFA 299
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAP 448
TRA +L ++ + + LL P+ S RLIG+ ++ F + + P
Sbjct: 300 QVTRAKSLSVPVADRAALERIGLDLLAGLFPLRRSARLIGIALSGFEQGEKEEP 353
>gi|350572217|ref|ZP_08940522.1| DNA-directed DNA polymerase IV [Neisseria wadsworthii 9715]
gi|349790473|gb|EGZ44382.1| DNA-directed DNA polymerase IV [Neisseria wadsworthii 9715]
Length = 383
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 130/349 (37%), Positives = 197/349 (56%), Gaps = 18/349 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LKG P+ V G S+IC A+YEARRFG+ +AM A
Sbjct: 35 RKIIHIDMDAFYASVELREQPHLKGLPVVVAWEGPRSVICAASYEARRFGLHSAMSVASA 94
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+ +++P +F Y S VF ++ SLDEAYLD+T + + +
Sbjct: 95 QRLCPQAVYIPPNFPLYREISQQVHAVFRQHTDLIEPLSLDEAYLDVTRNFQNIPYAS-Q 153
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A+ +R ++ + GLT SAGVAPN+ LAK+ SD KPNGQFVLP +++A F+ +LP
Sbjct: 154 VAKTIRAEIFRQTGLTASAGVAPNKFLAKIASDWRKPNGQFVLPPEKVA--EFLHTLPPE 211
Query: 282 KIGGIGKVTEHILRDVFGINTCEEML--QKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G+GKVT ++ + GI+T ++L ++G L +F + + G+ +
Sbjct: 212 KIPGVGKVTRLKMQSL-GIDTVGDLLRFERGE-LANLFGKWGYRLY-ELARGIDNRAVKP 268
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R R IS+E T + ED L + L +A+ L ++ R++TLKLKTA F +
Sbjct: 269 SRERVQISTEIT--LPEDLPLNQILLHLPHLADDLWQQAARKKAAFRSVTLKLKTADFRI 326
Query: 398 RTRAVTLQKYISSSEDILKHA---SVLLKAELPVSLRLIGLRVTQFNED 443
TR+ T + + +L+ A S L L + RLIGL V+ +
Sbjct: 327 ITRSQTFSSPLPDAASLLQAAHQISTRLPHTLHATYRLIGLGVSHLEPN 375
>gi|139473158|ref|YP_001127873.1| DNA polymerase IV [Streptococcus pyogenes str. Manfredo]
gi|189044614|sp|A2RCQ1.1|DPO4_STRPG RecName: Full=DNA polymerase IV; Short=Pol IV
gi|134271404|emb|CAM29624.1| DNA polymerase IV [Streptococcus pyogenes str. Manfredo]
Length = 364
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 209/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>gi|71904218|ref|YP_281021.1| DNA polymerase IV [Streptococcus pyogenes MGAS6180]
gi|123639299|sp|Q48RJ4.1|DPO4_STRPM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|71803313|gb|AAX72666.1| DNA polymerase IV [Streptococcus pyogenes MGAS6180]
Length = 364
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 208/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTN--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGITM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>gi|352089863|ref|ZP_08954168.1| DNA-directed DNA polymerase [Rhodanobacter sp. 2APBS1]
gi|351679031|gb|EHA62174.1| DNA-directed DNA polymerase [Rhodanobacter sp. 2APBS1]
Length = 367
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 136/355 (38%), Positives = 190/355 (53%), Gaps = 12/355 (3%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR LHVDMDAFYA+VE +PSL+GKP+AV G S++C A+YEAR FGVR+AMP
Sbjct: 13 SRKILHVDMDAFYASVEQRDDPSLRGKPVAVAWRGARSVVCAASYEARVFGVRSAMPAIR 72
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A +LCP+LIFVP DF +Y S R++F ++ SLDEAYLD+T G S
Sbjct: 73 AERLCPQLIFVPPDFVRYKAVSRQVREIFARHTELIEPLSLDEAYLDVTTTKSGLG-SAT 131
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
AE +R ++ +E LT SAGVAPN+ LAK+ SD KP+G FV+ + V F++ LP+
Sbjct: 132 ATAEAIREAIRKETRLTASAGVAPNKFLAKIASDFRKPDGLFVIRPQQ--VEAFLTPLPV 189
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
++ G+GKV E L GI T E+ + G+
Sbjct: 190 GRLPGVGKVMEAKL-AALGIATVGELRAFAQAELEQRFGRWGRRLHELAQGIDEHPVQPQ 248
Query: 341 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE-GLRGRTLTLKLKTASFEVRT 399
R +S+E TF L + ++AE A Q+E G RT+ LKLKTA F T
Sbjct: 249 RPTLQVSAEDTFEHDLRLDELEPHIRQLAEKAWAGHQREHGRVARTVVLKLKTADFHTLT 308
Query: 400 RAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF-NEDKVRAPSD 450
R++T S+ ++ A L + + P RL+G+ + F + D +A +D
Sbjct: 309 RSLTPPTRPMSAAELADIACALRERVQRPADSRYRLVGVGLAGFVDRDSYQAQAD 363
>gi|302382770|ref|YP_003818593.1| DNA-directed DNA polymerase [Brevundimonas subvibrioides ATCC
15264]
gi|302193398|gb|ADL00970.1| DNA-directed DNA polymerase [Brevundimonas subvibrioides ATCC
15264]
Length = 358
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 130/361 (36%), Positives = 204/361 (56%), Gaps = 17/361 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE +P+L+G P+AVG + ++ A+YEAR FGVR+AMP A
Sbjct: 7 RKIIHVDMDAFFASVEQRDDPALRGSPVAVGYAAQRGVVAAASYEARVFGVRSAMPSTTA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
+ CP+L+FVP F Y S + +F Y P SLDEAYLD+T+ RG+ +
Sbjct: 67 LRQCPDLVFVPPRFEVYRAVSKQIQAIFADYTPLVEPLSLDEAYLDVTDNL--RGLPTAS 124
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E A E+R + EE GLT SAG++ N+ LAK+ SD KPNGQFV+P R F+ LP+
Sbjct: 125 ETAVEIRARILEETGLTASAGISYNKFLAKLASDQRKPNGQFVVPPGRGE--AFVEILPV 182
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
++ G+G VT + + GI T E++ ++ L + ++ ++ G
Sbjct: 183 KRFYGVGPVTAAKMSRL-GIETGEDLRRQSLALLQQHFGKSGPWYYAISRGEDHRAVNPN 241
Query: 341 RFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKS SE TF +T+ A+ LA ++ +K GRT+T+K++ A F+
Sbjct: 242 RERKSSGSETTFGSDLTDPSAIEAGVLAMTGDVWGW-CEKSDAYGRTVTVKVRWADFQQS 300
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNEDKVRAPSDPTQKTL 456
TR+ + + ++S + + + + +L+++ P + +RL+G+ ++ F KV APS Q L
Sbjct: 301 TRSRSFPEPVTSKDRLEEISLLLVRSLYPPAKGIRLVGVSLSNF---KVPAPSASDQLAL 357
Query: 457 T 457
Sbjct: 358 A 358
>gi|389809863|ref|ZP_10205529.1| DNA polymerase IV [Rhodanobacter thiooxydans LCS2]
gi|388441393|gb|EIL97669.1| DNA polymerase IV [Rhodanobacter thiooxydans LCS2]
Length = 363
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 138/354 (38%), Positives = 187/354 (52%), Gaps = 12/354 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R LHVDMDAFYA+VE +P+L+GKP+AV G S++C A+YEAR FGVR+AMP A
Sbjct: 10 RKILHVDMDAFYASVEQRDDPALRGKPVAVAWRGARSVVCAASYEARVFGVRSAMPAIRA 69
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+LIFVP DF +Y S R++F ++ SLDEAYLD+T G S
Sbjct: 70 ERLCPQLIFVPPDFVRYKAVSRQIREIFARHTELIEPLSLDEAYLDVTTTKSALG-SATA 128
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
AE +R ++ EE LT SAGVAPN+ LAK+ SD KP+G FV+ + V TF++ LP+
Sbjct: 129 TAEAIRAAIREETRLTASAGVAPNKFLAKIASDFRKPDGLFVVRPQQ--VETFLTPLPVG 186
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
++ G+GKV E L GI T E+ + G+ R
Sbjct: 187 RLPGVGKVMEAKL-AALGIATVGELRAFAQAELEQRFGRWGRRLHELSRGVDEHPVQPER 245
Query: 342 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR-GRTLTLKLKTASFEVRTR 400
IS+E TF L + +A A Q E R RT+ LKLKTA F TR
Sbjct: 246 PTLQISAEDTFEHDLLLEELEPHIRRLAAKAWAAYQHEHARVARTVVLKLKTADFHTLTR 305
Query: 401 AVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF-NEDKVRAPSD 450
++T + S+ ++ A L + E P RL G+ + F N D +A +D
Sbjct: 306 SLTPVQRPRSAAELADIACALRERVERPADSRYRLAGVGLAGFVNGDSYQAQAD 359
>gi|209559938|ref|YP_002286410.1| DNA polymerase IV [Streptococcus pyogenes NZ131]
gi|209541139|gb|ACI61715.1| DNA polymerase IV [Streptococcus pyogenes NZ131]
Length = 364
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 208/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFAL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALFQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>gi|365899200|ref|ZP_09437117.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3843]
gi|365420001|emb|CCE09659.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. STM 3843]
Length = 367
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 197/347 (56%), Gaps = 14/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEAR FGVR+AMP A
Sbjct: 16 RKIIHIDMDAFYASVEQRDNPDLRGKPVAVGGSKERGVVAAASYEARAFGVRSAMPSVTA 75
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFV F Y S R +F ++ SLDEAYLD+TE + ++ +
Sbjct: 76 KRKCPDLIFVRPRFEVYKAISREIRDIFAEHTAIIEPLSLDEAYLDVTENLQHIPVA-TD 134
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA +R + E LT SAG++ N+ LAK+ SD KPNGQFV+ +M F+ LP+
Sbjct: 135 IATAIRAKILRETCLTASAGISYNKFLAKLASDHRKPNGQFVI-TPKMGP-AFVEELPVG 192
Query: 282 KIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
K GIG T + + GI T +M Q + A F + A ++ + G+
Sbjct: 193 KFHGIGPATNAKM-NRLGIFTGMDMRNQTLEFMNAHFGKAGA-YYYWISRGVDERPVRAN 250
Query: 341 RFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKS+ +E TFS +TE AL+ +L + + + + G GRT+TLK+K + FE+
Sbjct: 251 RIRKSVGAENTFSGDLTEFAALVA-ELDPLVDKIWGHCESTGNFGRTVTLKVKFSDFEII 309
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNED 443
TR+ +L ISS +D+ + LL++E+P +RL+G+ ++ +
Sbjct: 310 TRSRSLASAISSRQDLGRLTIGLLESEMPTPKPVRLLGVSLSSLQSE 356
>gi|317154691|ref|YP_004122739.1| DNA-directed DNA polymerase [Desulfovibrio aespoeensis Aspo-2]
gi|316944942|gb|ADU63993.1| DNA-directed DNA polymerase [Desulfovibrio aespoeensis Aspo-2]
Length = 392
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 136/347 (39%), Positives = 203/347 (58%), Gaps = 18/347 (5%)
Query: 105 RSW-LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFI 160
++W LH+DMDAF+A+VE L +P +GKP+AVG S ++ A+YEAR++GVR+AM
Sbjct: 2 QTWILHIDMDAFFASVEQLDHPEYRGKPLAVGGTSDRSVVSAASYEARKWGVRSAMSVVK 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
ARKLCP+L+ V +Y S+ ++ P AS+DEAYLD T + ER I
Sbjct: 62 ARKLCPDLLLVSGRMGRYKEISNQVMAALHEFSPTVEQASVDEAYLDGTGL--ERLFGPI 119
Query: 221 -EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSL 278
++A +++T V E GLTCS G AP R LAK+ SD+NKP+G F+L P D V F+ +L
Sbjct: 120 DQVARQIKTRVREVTGLTCSVGAAPVRFLAKIASDVNKPDGMFILRPED---VAGFLRTL 176
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA--VFSHSTADFFLSVGLGLGSTN 336
P+ +I G+G LR + G TC ++L + V + A + G+ ST
Sbjct: 177 PVGRIPGVGAKLAETLRHM-GARTCGDILGRPRSYWEQRVGKYGGALHDRAGGID-PSTV 234
Query: 337 TPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
TP + KS S+E TF T D+ +L R L +E + +D++ G +GRT+TLK+K A F
Sbjct: 235 TPTSEA-KSCSAENTFHEDTTDREVLNRWLLAQSERVGSDLRGHGYKGRTVTLKVKFADF 293
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFN 441
TR+ +L ++ I + A LL + +L ++RLIG+ V+ F+
Sbjct: 294 TQITRSRSLDARTDNTALICETARDLLGQLDLRRAVRLIGVGVSNFS 340
>gi|408793588|ref|ZP_11205194.1| ImpB/MucB/SamB family protein [Leptospira meyeri serovar Hardjo
str. Went 5]
gi|408462092|gb|EKJ85821.1| ImpB/MucB/SamB family protein [Leptospira meyeri serovar Hardjo
str. Went 5]
Length = 358
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 129/348 (37%), Positives = 191/348 (54%), Gaps = 17/348 (4%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFIARK 163
+H+DMDAFYA+VE P ++GKP+ VG + ++C A+YEAR+FGVR+A+P F A K
Sbjct: 5 IHIDMDAFYASVEQRDFPEMRGKPVVVGGSPHSRGVVCAASYEARKFGVRSAIPCFQAYK 64
Query: 164 LCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIA 223
LCP+ IF P F Y S R +F +Y SLDEAYLD+T + ++ IA
Sbjct: 65 LCPDAIFTPPRFEVYKSISKEIRSIFLEYTDLVEPLSLDEAYLDVTSNKLQIPLAST-IA 123
Query: 224 EELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTFISSLPIRK 282
+E+R +++ GLTCSAGVA N+ LAK+ S+ NKPNG + VLP + F+ +P+
Sbjct: 124 KEIRKKIFDRTGLTCSAGVAQNKFLAKMASEKNKPNGLYVVLPGEE---EKFLDDIPLYS 180
Query: 283 IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARF 342
GIGK T L + E + S L F A F+ + GL R
Sbjct: 181 FFGIGKKTYERLSQLGYTKGSELRKAEESFLVGEFGKMGAVFY-RMARGLDDREVIPFRD 239
Query: 343 RKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRA 401
KSI E TFS +ED A L L +++ L M ++ +G+TLTLK+K F V+ ++
Sbjct: 240 PKSIGVETTFSHDSEDFAYLLLTLENLSKELELRMGRKNKQGKTLTLKIKFEDFTVKQKS 299
Query: 402 VTLQKYISSSEDILKHASVLL------KAELPVSLRLIGLRVTQFNED 443
++ + ++++ + +S LL E +RL+G+ VT F+ D
Sbjct: 300 ISSESVFYLADNLFQQSSNLLANVWKENTEPMKKIRLLGISVTNFSSD 347
>gi|326386774|ref|ZP_08208395.1| DNA polymerase IV [Novosphingobium nitrogenifigens DSM 19370]
gi|326208827|gb|EGD59623.1| DNA polymerase IV [Novosphingobium nitrogenifigens DSM 19370]
Length = 380
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 191/345 (55%), Gaps = 14/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA---NYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE +PSL+G+P+AVG + +YEAR FGVR+AMP A
Sbjct: 16 RKVIHIDMDAFYASVEQRDDPSLRGRPVAVGGAAARGVVAAASYEARTFGVRSAMPSTRA 75
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCPEL+FVP F Y S VF Y P SLDEAYLD+T R G S
Sbjct: 76 ARLCPELVFVPPRFDVYRAVSRQIHAVFRDYTPLVEPLSLDEAYLDVTADLRGIG-SATR 134
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAE +R + E GLT SAGV+ N+ LAK+ SD NKP+G V+ A F++ LP+
Sbjct: 135 IAEIIRQRIRAETGLTASAGVSYNKFLAKLASDQNKPDGLCVIRPGEGA--DFVAGLPVA 192
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGLGSTNTPQ 339
+ GIG + + GI T ++ +G L + H + AD+ G+ +
Sbjct: 193 RFHGIGPRGAERM-EALGIRTGADL--RGVELAVLRKHFGAQADYLFRAARGIDLRSVEP 249
Query: 340 ARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKS+ ERTF R+ L +I E++ A + K G+ GRT+TLKLKT+ F+
Sbjct: 250 DRPRKSVGGERTFDRDLSSGTALREALDKITEIVWARIVKAGVHGRTVTLKLKTSDFQAI 309
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
TRA + + ++ ++ + LL A LP+ +RL+GL ++ +
Sbjct: 310 TRARSFARPVADQDEFARAGRELLDALLPLPQPIRLMGLTLSGLD 354
>gi|50914926|ref|YP_060898.1| DNA polymerase IV [Streptococcus pyogenes MGAS10394]
gi|306826715|ref|ZP_07460017.1| DNA-directed DNA polymerase IV [Streptococcus pyogenes ATCC 10782]
gi|73620812|sp|Q5XA48.1|DPO4_STRP6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|50904000|gb|AAT87715.1| DNA polymerase IV [Streptococcus pyogenes MGAS10394]
gi|304431004|gb|EFM34011.1| DNA-directed DNA polymerase IV [Streptococcus pyogenes ATCC 10782]
Length = 364
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 208/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTN--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>gi|383480538|ref|YP_005389432.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS15252]
gi|383494519|ref|YP_005412195.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS1882]
gi|378928528|gb|AFC66734.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS15252]
gi|378930246|gb|AFC68663.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS1882]
Length = 364
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 209/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVIM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>gi|238021390|ref|ZP_04601816.1| hypothetical protein GCWU000324_01289 [Kingella oralis ATCC 51147]
gi|237868370|gb|EEP69376.1| hypothetical protein GCWU000324_01289 [Kingella oralis ATCC 51147]
Length = 360
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 133/356 (37%), Positives = 197/356 (55%), Gaps = 19/356 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P L+GKP+ V G S+IC A+YEAR++G+R+AM A
Sbjct: 5 RKIIHIDMDAFYASVELREQPHLRGKPVVVAWDGARSVICAASYEARKYGLRSAMAVATA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
++LCP +F+P F Y S ++F + +LDEAYLD+T C ++ I+
Sbjct: 65 KRLCPHAVFIPPQFALYRQVSRQIHQIFRLHTDLIEPLALDEAYLDVT--CNKQNIAYAR 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 279
+IA +R ++ + GLT SAG+APN+ LAK+ SD KPNGQFV+ P + V F+ +LP
Sbjct: 123 DIALAIRAEIHRQTGLTASAGIAPNKFLAKIASDWRKPNGQFVIAPQN---VNAFLHTLP 179
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP- 338
+ KI G+GK T L + G T + LQ+ L + + L L G N P
Sbjct: 180 LGKISGVGKKTLAKL-NAQGWRTVGD-LQRVPLGMLINLFGRWGYRLH-DLAHGVDNRPV 236
Query: 339 -QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R R IS+E T + R + ++A L+ MQ+ G+TLTLKLKT+ F
Sbjct: 237 EPERERVQISTEITLPDDLPLGQIVRHIPDLARDLAQQMQRRHTIGQTLTLKLKTSDFRT 296
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPSDP 451
TR+ T + S++ +++ A L K +P RLIG+ ++ +D+ R P P
Sbjct: 297 LTRSQTYSSALPSAQTLIQAAQQLAK-RMPSEHEYRLIGIGISHL-QDENRQPELP 350
>gi|424917329|ref|ZP_18340693.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM597]
gi|392853505|gb|EJB06026.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM597]
Length = 363
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 126/343 (36%), Positives = 189/343 (55%), Gaps = 12/343 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+GKP+AVG ++ A+YEAR+FGV +AMP A
Sbjct: 11 RKIVHVDMDAFYASVEQRDNPELRGKPIAVGGSAARGVVAAASYEARKFGVHSAMPSVTA 70
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFV F Y S R++F +Y P SLDEAYLD+T + I+ E
Sbjct: 71 KRKCPDLIFVLPRFDVYKAVSQQIREIFAEYTPLIEPLSLDEAYLDVTHNLKGMEIA-TE 129
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + E GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F+ +LP+
Sbjct: 130 IALEIRARIKEVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---FVEALPV 186
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T + + GI+T + +K + +F + G+
Sbjct: 187 KKFHGVGPATAERMHRL-GIDTGASLKEKSLEFLVEHFGKSGPYFYGIARGIDERQVKPN 245
Query: 341 RFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TFS R+ L + E + A + G+ +T+TLK+K A F T
Sbjct: 246 RVRKSVGAEDTFSQDLHTFEPAREGLQPLIEKVWAYCEANGIGAKTVTLKVKYADFNQIT 305
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
R+ T+ + + D+ + S+LL P +RL+G+ ++
Sbjct: 306 RSKTVPAPLPAIADLEEIISLLLVPIFPPRKGVRLLGVTLSSL 348
>gi|325270034|ref|ZP_08136642.1| DNA-directed DNA polymerase IV [Prevotella multiformis DSM 16608]
gi|324987619|gb|EGC19594.1| DNA-directed DNA polymerase IV [Prevotella multiformis DSM 16608]
Length = 364
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 200/365 (54%), Gaps = 28/365 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE NP L+GKP+AVG ++ TA+YEAR FGV +AMP A
Sbjct: 2 RKIIHIDMDAFFASVEQRDNPGLRGKPIAVGFDGPRGVVSTASYEARPFGVHSAMPMAQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
R+ CP L+ VP F +Y S VF +Y SLDEA+LD+TE ++G+ +
Sbjct: 62 RRRCPHLVVVPCHFDRYKAVSRQIHAVFHEYTDLVEPISLDEAFLDVTE--NKKGMELAV 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA E++ + + LT SAGV+ N+LLAK+ SD+ KP+G F + DR + FI SLP+
Sbjct: 120 DIAREIKQKILDRTSLTASAGVSYNKLLAKISSDMRKPDGLFTVHPDR--ALGFIGSLPV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVF---SHSTADFFLSVGLGLGSTN 336
K+ GIG T + D+ G+ T ++ Q L VF H DF G+ +
Sbjct: 178 EKLWGIGPKTAKRMHDM-GVFTGGQLRQVSRRHLVQVFGKMGHVYYDF----SRGIDNRR 232
Query: 337 TPQARFRKSISSERTF---SVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
RKS+ ERTF E K + LY + E+ E L+ + G GRTLTLKLK
Sbjct: 233 VVAFHERKSVGCERTFLEDIHVESKIIIELYHIVLELVERLA----RSGFEGRTLTLKLK 288
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGLRVTQFNEDKVRAPS 449
+ TR++T ++ + + +DIL A LL A +RL+GL V+ +K AP
Sbjct: 289 WDAASQITRSLTQERVLRTKDDILPLAKRLLGETAYHDRPVRLMGLSVSSPVIEKADAPG 348
Query: 450 DPTQK 454
P +
Sbjct: 349 RPVWR 353
>gi|289665427|ref|ZP_06487008.1| DNA polymerase IV [Xanthomonas campestris pv. vasculorum NCPPB 702]
gi|289668390|ref|ZP_06489465.1| DNA polymerase IV [Xanthomonas campestris pv. musacearum NCPPB
4381]
Length = 359
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 135/348 (38%), Positives = 199/348 (57%), Gaps = 18/348 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T + G+
Sbjct: 62 ERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R + F+ L +
Sbjct: 120 EIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--IDAFLLPLKV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFG-SFGQSLYRRARGIDERPVEP 235
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+ +S+SSE TFS ED L L + +A ++ GRT+ LKLKT++F +
Sbjct: 236 DQEVQSVSSEDTFS--EDLPLDALDPHILRLAGKTWLATRRTERIGRTVVLKLKTSNFRI 293
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVS--LRLIGLRVTQFNE 442
TR+ T ++ +S E + + A S+ + E+P RL+G+ ++ F++
Sbjct: 294 LTRSYTPEQPPASQEALAQIALSLTRRVEMPAQTRYRLVGVGLSGFSD 341
>gi|347530139|ref|YP_004836887.1| DNA polymerase IV [Sphingobium sp. SYK-6]
gi|345138821|dbj|BAK68430.1| DNA polymerase IV [Sphingobium sp. SYK-6]
Length = 366
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 141/354 (39%), Positives = 201/354 (56%), Gaps = 18/354 (5%)
Query: 97 LEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI---CTANYEARRFGVR 153
+EA R +HVDMDAFYA+VE +PSL+GKP+AVG A+YEAR FGVR
Sbjct: 1 MEAAPVQHRKIIHVDMDAFYASVEQRDDPSLRGKPIAVGGGGPRGVVAAASYEARVFGVR 60
Query: 154 AAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR 213
+AMPG AR+LCPEL+FV F Y S R +F ++ SLDEAYLD+T+
Sbjct: 61 SAMPGGQARRLCPELVFVRARFDAYRAVSQQIRGIFERFTDVIQPLSLDEAYLDVTQ--N 118
Query: 214 ERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAV 271
+ GI S +A+E+R + EE GLT SAGV+ N+L+AK+ SD NKP+G V P + A
Sbjct: 119 KLGIVSATYVAQEIRRLIREETGLTASAGVSCNKLIAKLASDQNKPDGLCIVKPEEAEA- 177
Query: 272 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVG 329
F++++P+ +I GIG VT + GI++ ++ K L A+ H +A F+
Sbjct: 178 --FMAAMPVGRIHGIGPVTARRM-ATLGIHSGADL--KAWPLPALQRHFGKSATFYHDAA 232
Query: 330 LGLGSTNTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 388
G+ RKSIS E TF S + L +L +IA L + GRT+TL
Sbjct: 233 RGIDDRPVRDRETRKSISVEDTFESDIGAEGQLLAELEKIAARLWTRVIAARALGRTVTL 292
Query: 389 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQF 440
K+K F + TR+ TL ++ED+ + LL+A+LP+ + RL+GL ++
Sbjct: 293 KIKLGDFRILTRSRTLPAPPVNAEDLYAIGTDLLRAQLPLPIGARLLGLGLSNL 346
>gi|386399214|ref|ZP_10083992.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. WSM1253]
gi|385739840|gb|EIG60036.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. WSM1253]
Length = 367
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 203/365 (55%), Gaps = 27/365 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE +P L+GKP+AVG + ++ A+YEAR FGVR+AMP A
Sbjct: 15 RKIIHIDMDAFYASVEQRDHPELRGKPVAVGGSAERGVVAAASYEAREFGVRSAMPSVTA 74
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI- 220
++ CP+LIFV F Y S R +F ++ SLDEAYLD+TE + GI
Sbjct: 75 KRQCPDLIFVKPRFEVYKAISRQIRDIFAEHTAIIEPLSLDEAYLDVTE-----NLQGIP 129
Query: 221 ---EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
+IA ++R + E GL SAG++ N+ LAK+ SD KPNGQFV+ + F+ +
Sbjct: 130 LARDIALKIRERIKAETGLNASAGISYNKFLAKLASDHRKPNGQFVISPEMGP--AFVET 187
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ K GIG T + + + Q + A F S A ++ + G+
Sbjct: 188 LPVGKFHGIGPATGAKMNALGMFTGLDIRRQTLEFMNANFGKSGA-YYYWISRGVDERPV 246
Query: 338 PQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKSI +E TFS +TE L+ +L + + + + G RGRT+TLK+K A F
Sbjct: 247 RANRVRKSIGAETTFSSDLTEFDTLVA-ELKPLVDKVWRHCEATGSRGRTVTLKIKFADF 305
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT--QFNEDKVRAPSDP 451
E+ TR+ + ++ +D+ + A LL+ E+P+ S+RL+G+ ++ Q +D ++P
Sbjct: 306 EIITRSRSALSPVAGRDDLERLACGLLEGEMPLPKSVRLLGVSLSSLQAGDD-----AEP 360
Query: 452 TQKTL 456
Q TL
Sbjct: 361 PQLTL 365
>gi|386363358|ref|YP_006072689.1| impB/mucB/samB family protein [Streptococcus pyogenes Alab49]
gi|350277767|gb|AEQ25135.1| impB/mucB/samB family protein [Streptococcus pyogenes Alab49]
Length = 364
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 208/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CPE IF+ ++ KY + R++F +Y S+DEAYLD+T +
Sbjct: 69 AMSSKEAYERCPEAIFISGNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYLDVTN--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>gi|390444078|ref|ZP_10231861.1| DNA polymerase IV [Nitritalea halalkaliphila LW7]
gi|389665309|gb|EIM76780.1| DNA polymerase IV [Nitritalea halalkaliphila LW7]
Length = 367
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 132/347 (38%), Positives = 197/347 (56%), Gaps = 20/347 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE +P L+GKP+AVG ++ A+YEAR +GVR+AMPG +A
Sbjct: 16 RKIIHVDMDAFFASVEQRDHPELRGKPVAVGGDGERGVVAAASYEARAYGVRSAMPGKLA 75
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
+ CP L+FVP F+ Y S +++F + SLDEA+LD+TE + G S I
Sbjct: 76 IRKCPHLLFVPPRFSVYKEVSQQVQEIFFSFTDFVEPLSLDEAFLDVTE--NKFGYKSAI 133
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQ-FVLPNDRMAVMTFISSLP 279
+A +R +++E GLT SAGV+ N+ LAK SD+ KPNGQ +LP D F+ LP
Sbjct: 134 YMAYLIRKRIFQETGLTASAGVSYNKFLAKTASDLRKPNGQAVILPED---AAEFLERLP 190
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGLGSTNT 337
+ K G+GKVT L + FGI + ++ K L + H + + + G+ +
Sbjct: 191 VEKFYGVGKVTAAKL-NRFGIYSGADL--KSFSLAFLTKHFGKSGQHYYQIVRGIHDSPV 247
Query: 338 PQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKSIS E TF ++ L + L + E L ++K+GL+GRT LKLK + F
Sbjct: 248 QPDRMRKSISVESTFEQDISARNELDF-ALQRLLEDLKKRLRKQGLKGRTAVLKLKYSDF 306
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFN 441
+TR+ + + YI E + + LL+ E L +RL+G+ + + N
Sbjct: 307 SQQTRSRSQEHYI-PEEALEEFYRALLEQEPLKQPIRLMGVGLQKLN 352
>gi|352516889|ref|YP_004886206.1| DNA polymerase IV [Tetragenococcus halophilus NBRC 12172]
gi|348600996|dbj|BAK94042.1| DNA polymerase IV [Tetragenococcus halophilus NBRC 12172]
Length = 378
Score = 202 bits (513), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/359 (34%), Positives = 200/359 (55%), Gaps = 18/359 (5%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE NP L P+ + G ++ TANY+A
Sbjct: 7 LQFPLKNDTSRKVIHIDMDAFFASVEERDNPKLAQYPLVIARHPKDTGGRGVVTTANYKA 66
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R++G+ +AM A +LCP FVP + KY S R++F Y S+DEAYLD
Sbjct: 67 RKYGIHSAMSAQKAYELCPHATFVPGNHQKYREISQKIREIFHCYTDIIEPVSIDEAYLD 126
Query: 208 ITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 267
+T + S I+IA+ ++ +++E LTCSAGV+ N+ LAK+ SD KP G V+ D
Sbjct: 127 VTN-NKINSSSAIKIAKLIQHDIWQEVHLTCSAGVSYNKFLAKLASDYQKPRGLTVVTPD 185
Query: 268 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFL 326
+ F+ LPI K G+GK T + ++ GI T ++ QK + L +F +
Sbjct: 186 E--AVEFLRDLPIEKFHGVGKKTVPKMHEL-GIYTGNDLYQKSEMELIQIFGKMGYSLYR 242
Query: 327 SVGLGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 384
V G+ ++ R RKS+ ERT+ ++T ++ L +L +AE ++ ++KE G+
Sbjct: 243 KVR-GIHNSPVQVTRERKSVGRERTYGKALTSEQECL-SQLRIMAEQVTESLKKEQKHGK 300
Query: 385 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 441
T+ LKL+ + FE T+ T+Q+YI +DI AS++ + A++ +RL+G+ +T +
Sbjct: 301 TVVLKLRYSDFETITKRATVQEYIYQKDDIFSQASLIFEEVAQVEKGVRLLGITMTNLD 359
>gi|374578695|ref|ZP_09651791.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. WSM471]
gi|374427016|gb|EHR06549.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bradyrhizobium sp. WSM471]
Length = 367
Score = 202 bits (513), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 203/365 (55%), Gaps = 27/365 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE +P L+GKP+AVG + ++ A+YEAR FGVR+AMP A
Sbjct: 15 RKIIHIDMDAFYASVEQRDHPELRGKPVAVGGSAERGVVAAASYEAREFGVRSAMPSVTA 74
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI- 220
++ CP+LIFV F Y S R +F ++ P SLDEAYLD+T+ + GI
Sbjct: 75 KRQCPDLIFVKPRFEVYKAISRQIRDIFAEHTPIIEPLSLDEAYLDVTQ-----NLQGIP 129
Query: 221 ---EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
+IA ++R + E GL SAGV+ N+ LAK+ SD KPNGQFV+ + F+ +
Sbjct: 130 LARDIALKIRERIKAETGLNASAGVSYNKFLAKLASDHRKPNGQFVISPEMGP--AFVET 187
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ K GIG T + + + Q + A F S A ++ + G+
Sbjct: 188 LPVGKFHGIGPATGAKMNALGMFTGLDIRRQTLEFMNANFGKSGA-YYYWISRGVDDRPV 246
Query: 338 PQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKSI +E TFS +T+ L+ +L + + + + G RGRT+TLK+K A F
Sbjct: 247 RANRVRKSIGAETTFSNDLTQFDTLVA-ELKPLIDKVWRHCEATGSRGRTVTLKIKFADF 305
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT--QFNEDKVRAPSDP 451
E+ TR+ + ++ D+ + A LL+ E+P+ S+RL+G+ ++ Q +D ++P
Sbjct: 306 EIITRSRSAVSPVAGRADLERLACGLLEVEMPLPKSVRLLGVSLSSLQAGDD-----AEP 360
Query: 452 TQKTL 456
Q TL
Sbjct: 361 PQLTL 365
>gi|304439728|ref|ZP_07399627.1| NAD(+) kinase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371803|gb|EFM25410.1| NAD(+) kinase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 346
Score = 202 bits (513), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 130/335 (38%), Positives = 190/335 (56%), Gaps = 18/335 (5%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKL 164
LHVD+DAFYA+VE L NP+LKGKP+ VG S +I TANYEAR+FG+ +AMP F+AR L
Sbjct: 3 LHVDIDAFYASVEELDNPNLKGKPVVVGGRSRRGVITTANYEARKFGLHSAMPIFMARSL 62
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI--TEVCRERGISGIEI 222
CP++I VP +Y S + Y S+DEAYLDI TE G E+
Sbjct: 63 CPQVIIVPGRMYRYKEKSIEVFSILKTYAKVIEQVSIDEAYLDIAGTE-------DGREL 115
Query: 223 AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRK 282
A ++++ V E+ GLT S G++ N+ LAK+ SD NKP+G + D V + L I K
Sbjct: 116 AMKIKSEVKEKTGLTISVGLSYNKFLAKIASDWNKPDGFMEIDED--MVPEILYDLDISK 173
Query: 283 IGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
+ GIGKV+E LR++ GIN ++++ + F+ + + + G+ R
Sbjct: 174 VHGIGKVSEDRLREL-GINNVKDLMSLSREYMTLEFNKMGHELYDRIR-GIDRREVKGDR 231
Query: 342 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRA 401
RKS+ ERTF+ T D+ +LY + ++ LS D+++ T+T+K+KT F++ T +
Sbjct: 232 KRKSMGVERTFTPTGDEKILYEYIDRFSKELSEDLKRIDKSAMTITIKIKTDKFKIHTIS 291
Query: 402 VTLQKYISSSEDILKHASVLL-KAELPVSLRLIGL 435
T + I EDI A L K E LRL+G+
Sbjct: 292 KTFLESIEKYEDIKNIAEELYDKLENRERLRLLGI 326
>gi|436840478|ref|YP_007324856.1| DNA polymerase IV [Desulfovibrio hydrothermalis AM13 = DSM 14728]
gi|432169384|emb|CCO22752.1| DNA polymerase IV [Desulfovibrio hydrothermalis AM13 = DSM 14728]
Length = 389
Score = 202 bits (513), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 128/344 (37%), Positives = 191/344 (55%), Gaps = 11/344 (3%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGF 159
+ + +H+DMDAF+A+VE L NP+L+G+P+ VG+M S++ A+YEAR+FGVR+AMP
Sbjct: 1 MQKYIMHIDMDAFFASVEQLDNPALRGRPVGVGSMHRRSVLSAASYEARKFGVRSAMPVH 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
A KLCP+L V +Y SD KV Y P AS+DEAYLDIT + G
Sbjct: 61 QALKLCPQLQVVSGTRGRYKEISDQVMKVLGNYSPVVEQASIDEAYLDITGTQKLFGPPR 120
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSL 278
++A+ ++ +Y+ GLT S G+AP + LAK+ SD+NKPNG ++ P++ V F+ +L
Sbjct: 121 -KLAQSIKDDIYKTTGLTASVGIAPVKFLAKIASDLNKPNGISIIEPHE---VEEFLKTL 176
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
P+ KI G+GK L F + ++ + G G+ T
Sbjct: 177 PVEKIPGVGKKALPRLH-AFSVKFAADLRKYSPEFWKERFGERGLVLYEKGAGIDPTPVT 235
Query: 339 QARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
KS S+E TF D +L L + +E ++AD++++GL+GRT+TLK+K F
Sbjct: 236 LGGQMKSSSAENTFDDDVSDPHVLKTLLLKQSERIAADIRRKGLKGRTITLKIKFPDFRQ 295
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPVS-LRLIGLRVTQF 440
TR+ TL S S I K LL E + +RLIG+ ++ F
Sbjct: 296 ITRSKTLDFRTSHSGTIYKTGCKLLDNEGRIGPVRLIGIGISNF 339
>gi|42521969|ref|NP_967349.1| DNA polymerase IV [Bdellovibrio bacteriovorus HD100]
gi|39574499|emb|CAE78003.1| DNA polymerase IV [Bdellovibrio bacteriovorus HD100]
Length = 356
Score = 202 bits (513), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 137/362 (37%), Positives = 195/362 (53%), Gaps = 25/362 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD FYAAVE P LKGKP+ +G T S++CTA+YEAR+FGVR+AMP
Sbjct: 2 RKIIHIDMDCFYAAVEVKYRPELKGKPLGIGGPPNTRSVLCTASYEARKFGVRSAMPSSQ 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A +LCP+L+ +P F Y S R++ ++ SLDEAYLD+T+ C + G S
Sbjct: 62 AVRLCPQLVLIPPHFDLYKAESRKVREIMERFTNKIEPLSLDEAYLDVTD-CEQFGGSAT 120
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 279
IA+E+R ++ E LT SAGVAPN+ LAK+ SD KPNGQFV+ P D V TF+ LP
Sbjct: 121 LIAQEIRRLIFTELNLTASAGVAPNKFLAKIASDWKKPNGQFVVRPQD---VETFVKDLP 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+ KI G+GKVT + D+ G+ TC ++ + L + + S A G+
Sbjct: 178 VEKIFGVGKVTAQKMHDL-GLRTCGDIQKYTVLELSHWFGSRAAELYDFSRGIDHREVIT 236
Query: 340 ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG------RTLTLKLKTA 393
RKS++ E T++ +D L L + L D + RG + L +KLK
Sbjct: 237 EWERKSLTVEETYN--KDLPTLQDCLKTLPS-LYEDFVRRMDRGQYHDRIKGLVIKLKFF 293
Query: 394 SFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFNEDKVRAPSDP 451
F + T ++ IS + +L KA V +RL+GL V + K + SD
Sbjct: 294 DF----KQTTHEEVISELPTLQDFERLLEKAWNRRGVPVRLVGLGVRLGTQKKFSSESDS 349
Query: 452 TQ 453
+Q
Sbjct: 350 SQ 351
>gi|212703647|ref|ZP_03311775.1| hypothetical protein DESPIG_01692 [Desulfovibrio piger ATCC 29098]
gi|212672942|gb|EEB33425.1| ImpB/MucB/SamB family protein [Desulfovibrio piger ATCC 29098]
Length = 407
Score = 202 bits (513), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 196/363 (53%), Gaps = 20/363 (5%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG--TMSMICTANYEARRFGVRAAMPGFI 160
R LH+DMDAF+A+VE + +P +GKP+ +G T ++ TA+YEARRFGV +AMP
Sbjct: 8 FPRIILHLDMDAFFASVEQMDHPEWRGKPVIIGGETRGVVSTASYEARRFGVHSAMPMAT 67
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A +LCP+ IFV + +Y S + P AS+DEAYLD T + ER +
Sbjct: 68 AHRLCPQAIFVRGNRRRYAEISGRIMAALQDFSPLVEPASIDEAYLDATGL--ERLFGPV 125
Query: 221 E-IAEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISS 277
E + ++ V E GLTCS G AP + LAK+CSDINKP+G ++L P D V F+
Sbjct: 126 EQLIPAIKARVREVTGGLTCSVGAAPVKFLAKICSDINKPDGIYILRPED---VDGFLGG 182
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
L +R++ G+G+ L + GI E++ + L + G+
Sbjct: 183 LDVRRLPGVGRRMVAEL-EALGIRRVEQLRRYSPELLEQRFGKWGRELHARARGIDPRPV 241
Query: 338 PQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
KS S+E TF+ T D+ L L AE + A +++ GLR RT+TLK+K A F
Sbjct: 242 VPEHEAKSESAETTFARDTRDREFLKTMLLGHAERVGASLRRHGLRSRTVTLKIKFADFR 301
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 455
TR+ TL + +S+E I + + LL+AE LP +RLIGL V+ F S PTQ+
Sbjct: 302 QITRSRTLSEATNSTETIYETGTALLEAEALPQPVRLIGLGVSGFG-------SAPTQEL 354
Query: 456 LTN 458
L
Sbjct: 355 LPG 357
>gi|345430002|ref|YP_004823122.1| DNA polymerase IV [Haemophilus parainfluenzae T3T1]
gi|301156065|emb|CBW15536.1| DNA polymerase IV [Haemophilus parainfluenzae T3T1]
Length = 377
Score = 202 bits (513), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 138/350 (39%), Positives = 197/350 (56%), Gaps = 26/350 (7%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGF 159
+R +H+DMD FYA+VE NP+L+GKP+AVG S ++ T NYEAR+FG+ +AMP
Sbjct: 26 TRKIIHIDMDCFYASVEIRENPTLQGKPVAVGGSSRQRGVLTTCNYEARKFGLHSAMPTA 85
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
A K CP LI VP + Y S ++F +Y SLDEAYLD+T+ C + S
Sbjct: 86 QAIKKCPNLILVPVNMPLYKQVSAQIHQIFQRYTSIIEPLSLDEAYLDVTD-CTQCSGSA 144
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSL 278
IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ P++ V F+ +L
Sbjct: 145 TWIAQEIRQAIFDELKLTASAGVAPLKFLAKIASDMNKPNGQFVIQPHE---VEQFVKTL 201
Query: 279 PIRKIGGIGKVT-EHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGST 335
P++KI G+GKVT E +L+ G+ TCE+ +QK S+L +F + G+
Sbjct: 202 PLKKIPGVGKVTSERLLK--MGLETCED-VQKLDQSILLNIFGKMGKRIW-DFSHGIDER 257
Query: 336 NTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQKEGLRG-RTLTLK 389
R RKSI ERT S + + ALL AE+ + L R + +K
Sbjct: 258 EIQAHRERKSIGVERTLSENIRHLEQGIALLDNLYAELIRRIERSAPNIPLTAFRKIGVK 317
Query: 390 LKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVT 438
LK F+V T T L I S + +L+ + + S+RL+GL VT
Sbjct: 318 LKFEDFQVTTLEKTGLPLSIKSFQQLLEQ---IWQRSQGKSIRLVGLHVT 364
>gi|159901912|gb|ABX10645.1| DNA-directed DNA polymerase IV [uncultured planctomycete 3FN]
Length = 384
Score = 202 bits (513), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 123/348 (35%), Positives = 199/348 (57%), Gaps = 16/348 (4%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFIARK 163
+HVDMDAFYA++E P L+G P+ VG ++ ANY AR FGV +AMP A++
Sbjct: 3 VHVDMDAFYASIEERDRPELRGLPVIVGGDAQRRGVVSAANYVARSFGVHSAMPAATAKR 62
Query: 164 LCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIA 223
LCP+ +F+PT Y S R++F ++ P +LDEA+LD+T R G EI
Sbjct: 63 LCPQGVFLPTRMPHYVDVSCQIREIFGRFTPLVEPLALDEAFLDVTGSSRLFGPPE-EIG 121
Query: 224 EELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKI 283
++T++++E L S G+APN+ LAK+ SD++KP+G FV+ N + A+ F+ LP+ ++
Sbjct: 122 RTIKTAIHDELQLVASVGIAPNKFLAKLASDLDKPDG-FVVVNPK-AIHAFLDPLPVTRL 179
Query: 284 GGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
G+GK L D+ GI ++ L + S L F S +L + G+ + R
Sbjct: 180 WGVGKAAARKL-DLIGIQHIAQLRALPRES-LADNFGASGDQLWL-LANGIDDRDVIPDR 236
Query: 342 FRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
KSIS E TF+V +D L LA++ E ++ ++ LRGRT+ LK++ + F+ TR
Sbjct: 237 DAKSISHETTFAVDVDDMERLRGVLAQLTEQVARRVRAAELRGRTVQLKIRYSDFQTYTR 296
Query: 401 AVTLQKYISSSEDILKHASVLLKAELP---VSLRLIGLRVTQFNEDKV 445
+ L + +++I + A +L LP +++RL+G+ V+Q + K+
Sbjct: 297 STKLSQPTDVTDEIWQAAQSMLATRLPERTLAVRLLGIGVSQLDRSKL 344
>gi|198284367|ref|YP_002220688.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666878|ref|YP_002427031.1| DNA polymerase IV [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198248888|gb|ACH84481.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218519091|gb|ACK79677.1| DNA polymerase IV [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 378
Score = 202 bits (513), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 130/346 (37%), Positives = 189/346 (54%), Gaps = 17/346 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +HVDMDAF+AAVE +P L+G+P+ VG ++ T +YEARRFG+ +AM
Sbjct: 13 RKIIHVDMDAFFAAVEQRDHPELRGQPVIVGGDPAGRGVVATCSYEARRFGIHSAMTAAR 72
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
AR LCP+ +FV Y S + Y P SLDEA+LD+T + G+ +
Sbjct: 73 ARSLCPQAVFVRPRMDAYREASRQVMGILRCYTPLVEPLSLDEAFLDVTAATAD-GVLAV 131
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA E+R + E GLT SAGV+ N+LLAK+ S+ KPNG FV+P + + F++ LP+
Sbjct: 132 RIAREIRARIERETGLTASAGVSYNKLLAKLASEWRKPNGLFVVPPEHG--LAFLAPLPV 189
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K+ G+G T L GI+T ++ +L A F + +F V G+ S
Sbjct: 190 GKLHGVGPATVKKL-SAMGIHTVLDLRNASREVLIAQFGKA-GLWFYEVARGIDSRPVQT 247
Query: 340 ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+R RKS+ ERTF ED ++ L ++A +SA +Q GL GRT+++K + FE
Sbjct: 248 SRQRKSVGYERTFPQNLEDPKVMLSTLRQMAGQVSARLQALGLAGRTVSIKARFPDFETV 307
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPVSL------RLIGLRVT 438
TRA T + I +E I+ LL +P SL RL+G+ V+
Sbjct: 308 TRAHTDAQAIWRTEAIIACLPGLLAKAIPASLPMHASVRLLGVTVS 353
>gi|162146654|ref|YP_001601113.1| DNA polymerase IV [Gluconacetobacter diazotrophicus PAl 5]
gi|209543354|ref|YP_002275583.1| DNA-directed DNA polymerase [Gluconacetobacter diazotrophicus PAl
5]
gi|161785229|emb|CAP54775.1| putative DNA polymerase IV [Gluconacetobacter diazotrophicus PAl 5]
gi|209531031|gb|ACI50968.1| DNA-directed DNA polymerase [Gluconacetobacter diazotrophicus PAl
5]
Length = 381
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 126/343 (36%), Positives = 187/343 (54%), Gaps = 10/343 (2%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +P+L+G+P+AVG ++ A+YEARR+GVR+AMP A
Sbjct: 20 RRIIHVDMDAFYASVEQRDDPALRGRPLAVGGSRQRGVVAAASYEARRYGVRSAMPSVTA 79
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
R+ CP+LIFVP F Y S +F +Y SLDEAYLD+T+ +R S
Sbjct: 80 RRKCPDLIFVPPRFDVYRAVSAQIHAIFARYTGLIQPLSLDEAYLDVTDPLIDR-PSATA 138
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+++R ++ E GLT SAGV+ N+ LAK+ SD KP+G +V+ RM F+ SLP+
Sbjct: 139 IAQDIRAAIRAETGLTASAGVSYNKFLAKLASDYRKPDGLYVI-TPRMGP-RFVESLPVE 196
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
GIG T +R GI T ++ A A F+ + G R
Sbjct: 197 AFHGIGPATAARMR-AMGIRTGLDLRAHDMDSLARHFGKAAAFYYGIARGRDDRPVEADR 255
Query: 342 FRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
RKS+ +ERTF D A L + + + + +K GL RT+T+K+K A F+ R
Sbjct: 256 RRKSVGTERTFEHDIHDWAEALSALDGMVDRVWGECRKRGLVARTVTVKVKYADFQQTGR 315
Query: 401 AVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
A +L + +++ + A LL+ P +RL+G+ ++ +
Sbjct: 316 ARSLPQPLAAHAVFRQVACDLLRPFFPPERGIRLLGVTLSNLD 358
>gi|90418642|ref|ZP_01226553.1| DNA polymerase IV [Aurantimonas manganoxydans SI85-9A1]
gi|90336722|gb|EAS50427.1| DNA polymerase IV [Aurantimonas manganoxydans SI85-9A1]
Length = 399
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 134/364 (36%), Positives = 199/364 (54%), Gaps = 23/364 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE +PSL+G+P+AVG ++ A+YEAR +GVR+AMP A
Sbjct: 45 RKIIHIDMDAFYASVEQRDDPSLRGRPVAVGGSRERGVVAAASYEARVYGVRSAMPSVTA 104
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
R+ CP+LIFV F Y S R +F ++ P SLDEAYLD+TE + S +
Sbjct: 105 RRRCPDLIFVKPRFEVYKAISAEIRAIFAEHTPIIEPLSLDEAYLDVTENLHDIP-SATQ 163
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAE +R + E GLT SAGV+ N+ LAK+ SD KP+G FV+ M F+ LPI
Sbjct: 164 IAEMIRQRIREVTGLTASAGVSYNKFLAKLASDYRKPDGIFVV-TPAMGP-GFVEDLPIG 221
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
+ G+G T ++ FGI+T ++ K T ++ S+ G+ R
Sbjct: 222 RFHGVGPATAAKMQR-FGIHTGRDLHDKSLPFLQEHFGKTGPYYYSISRGIDERPVRANR 280
Query: 342 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQK-------EGLRGRTLTLKLKTAS 394
RKS+ +E TF A L+ E+ E L + K +RGRT+TLK+K A
Sbjct: 281 IRKSVGAENTFG-----ADLF-AFDEMREALQPILDKVWRYCETSTIRGRTVTLKVKFAD 334
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPSDPT 452
F+ TRA + + ++S +D+ + A LL A +P +RL+G+ ++ + + + PT
Sbjct: 335 FQQITRARSAVQPVASRDDLERIALSLLGAAMPFDKGVRLLGVALSSLIREGM-SDETPT 393
Query: 453 QKTL 456
Q +L
Sbjct: 394 QFSL 397
>gi|421892458|ref|ZP_16323115.1| DNA polymerase IV [Streptococcus pyogenes NS88.2]
gi|379981806|emb|CCG26837.1| DNA polymerase IV [Streptococcus pyogenes NS88.2]
Length = 364
Score = 201 bits (512), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 207/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D ++F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIHRIFKRYTDVVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D M
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AM 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + + I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNVAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>gi|93117307|gb|ABE99571.1| DinB [Neisseria meningitidis]
Length = 329
Score = 201 bits (512), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 186/327 (56%), Gaps = 16/327 (4%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIARKL 164
+H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM A++L
Sbjct: 1 IHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVATAKRL 60
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 224
CP+ ++VP F Y S VF +Y SLDEAYLD+T + + E+A+
Sbjct: 61 CPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS-EVAK 119
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 284
E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+ KI
Sbjct: 120 EIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPLGKIP 177
Query: 285 GIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARF 342
G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 178 GVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERPVKAE 232
Query: 343 RKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F + TR
Sbjct: 233 RERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRIITR 292
Query: 401 AVTLQKYISSSEDILKHASVLLKAELP 427
+T + +L+ A +L+ A +P
Sbjct: 293 TLTYSSVLPDCAALLQAAQMLM-ARVP 318
>gi|421595932|ref|ZP_16039866.1| DNA polymerase IV, partial [Bradyrhizobium sp. CCGE-LA001]
gi|404271960|gb|EJZ35706.1| DNA polymerase IV, partial [Bradyrhizobium sp. CCGE-LA001]
Length = 393
Score = 201 bits (512), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 129/348 (37%), Positives = 196/348 (56%), Gaps = 20/348 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE +P L+GKP+AVG + ++ A+YEAR+FGVR+AMP A
Sbjct: 42 RKIIHIDMDAFYASVEQRDHPELRGKPVAVGGSAERGVVAAASYEARKFGVRSAMPSVTA 101
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI- 220
++ CP+LIFV F Y S R +F ++ SLDEAYLD+TE + GI
Sbjct: 102 KRQCPDLIFVKPRFEVYKAISRQIRDIFAEHTDIIEPLSLDEAYLDVTE-----NLQGIP 156
Query: 221 ---EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
+IA ++R V E GL SAG++ N+ LAK+ SD KPNGQFV+ + F+
Sbjct: 157 LARDIALKIREKVRAETGLNASAGISYNKFLAKLASDHRKPNGQFVISPEMGP--AFVEM 214
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
LP+ K GIG T + + G+ T ++ Q + + A F S A ++ + G+
Sbjct: 215 LPVGKFHGIGPATAAKM-NALGLFTGLDIRNQTLAFMNANFGKSGA-YYYWISRGVDERP 272
Query: 337 TPQARFRKSISSERTFSVTEDKA-LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKSI +E TFS D L +L + + + + G RGRT+TLK+K A F
Sbjct: 273 VRANRIRKSIGAENTFSTDLDAYDALAAELRPLVDKVWRHCEATGNRGRTVTLKIKFADF 332
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 441
E+ TR+ ++ ++ +D+ + A LL+ E+P+ +RL+G+ ++
Sbjct: 333 EIITRSRSIPAPVARRDDLERLACGLLEIEMPLPKRVRLLGVSLSALQ 380
>gi|71911381|ref|YP_282931.1| DNA polymerase IV [Streptococcus pyogenes MGAS5005]
gi|71854163|gb|AAZ52186.1| DNA polymerase IV [Streptococcus pyogenes MGAS5005]
Length = 364
Score = 201 bits (512), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 209/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVKKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEIA---EMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI+ + ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNVKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>gi|150377463|ref|YP_001314058.1| DNA polymerase IV [Sinorhizobium medicae WSM419]
gi|150032010|gb|ABR64125.1| DNA-directed DNA polymerase [Sinorhizobium medicae WSM419]
Length = 378
Score = 201 bits (512), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 120/342 (35%), Positives = 186/342 (54%), Gaps = 10/342 (2%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEAR+FGV +AMP A
Sbjct: 26 RKIIHIDMDAFYASVEQRDNPELRGKPVAVGYPAARGVVAAASYEARKFGVHSAMPSVTA 85
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFVP F Y S +F +Y P SLDEAYLD+TE + ++ E
Sbjct: 86 KRKCPDLIFVPHRFEVYRAVSRQIHAIFAEYTPLIEPLSLDEAYLDVTENLKGMELA-TE 144
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAEE+R + E GLT SAGV+ N+ LAK+ SD KP+G FV+ F+ LP++
Sbjct: 145 IAEEIRARIRAETGLTASAGVSYNKFLAKIASDQRKPDGLFVITPKHGP--EFVQMLPVK 202
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
K G+G T ++ + GI T ++ + + +F + G+ R
Sbjct: 203 KFHGVGPATAEKMKRL-GIETGADLKARDLAFLQQHFGKSGPYFYWIARGIDGREVKPDR 261
Query: 342 FRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
RKS+ +E TF D L + + + + +RG+T+TLK+K + F TR
Sbjct: 262 IRKSVGAEDTFREDIHDLETAREGLRPLMDKVWHYCEAGSIRGKTVTLKVKWSDFTQITR 321
Query: 401 AVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 440
+ TL ++S+ ++ + +LL + P + +RL+G+ ++
Sbjct: 322 SKTLPAPVASAAEMAQIVDLLLSSIFPAAKGIRLLGVTLSSL 363
>gi|375088530|ref|ZP_09734868.1| hypothetical protein HMPREF9703_00950 [Dolosigranulum pigrum ATCC
51524]
gi|374561495|gb|EHR32834.1| hypothetical protein HMPREF9703_00950 [Dolosigranulum pigrum ATCC
51524]
Length = 395
Score = 201 bits (512), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 130/359 (36%), Positives = 197/359 (54%), Gaps = 22/359 (6%)
Query: 98 EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM-------SMICTANYEARRF 150
E TRD SR +H+DMDAFYA+VE +PSL+GKP+ + ++ TA+YEAR+F
Sbjct: 29 EPTRDTSRKIIHIDMDAFYASVERREDPSLEGKPVVIARHPKDTEGRGVVTTASYEARQF 88
Query: 151 GVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE 210
G+ +AM A +LCP IF+P +FT Y S +F +Y SLDEAYLD+T
Sbjct: 89 GIHSAMSAAKAYELCPRAIFIPPNFTLYRQISAQIHDIFYQYTDLVQPLSLDEAYLDVTN 148
Query: 211 VCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMA 270
++ S IA++L+ +YE+ LTCSAGV+ N+ +AK+ SD KP+G V+ +
Sbjct: 149 -NKKSMPSATMIAQQLQKIIYEQTQLTCSAGVSYNKFIAKIASDYQKPSGLTVVTP--AS 205
Query: 271 VMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVG 329
F+ LPI K G+G+ T + I T E++ Q+ L F + V
Sbjct: 206 AHHFLMQLPIEKFFGVGEKTLEKMH-ALNIYTGEDLYQQTLDDLMHRFGKMGYSLYHKVR 264
Query: 330 LGLGSTNTPQA--RFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRT 385
G N+P R RKS+ E T++ +T D ++ ++L +++ A ++K L G+T
Sbjct: 265 ---GIDNSPVVADRTRKSVGKESTYAHVITHDDEVI-QQLRRLSQQTFASLEKHRLHGKT 320
Query: 386 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 442
+ LK + ++F T+ TL YI S+ED+ AS L E V +RL+G+ VT N+
Sbjct: 321 VVLKYRYSNFSTHTKRRTLFNYIHSAEDLFNIASDLWYEEGDVEQGVRLLGVTVTNLNK 379
>gi|15675671|ref|NP_269845.1| DNA polymerase IV [Streptococcus pyogenes SF370]
gi|22095631|sp|Q99Y66.1|DPO4_STRP1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|13622885|gb|AAK34566.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes M1
GAS]
Length = 364
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 209/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVKKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTPQA--RFRKSISSERTFSVTEDKALLYRKL---AEIA---EMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI+ + ++A +Q
Sbjct: 236 YRKARGISNSPVKYDRIRKSIGSERTYA-----KLLYQETDIKAEISKNVKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>gi|359686511|ref|ZP_09256512.1| DNA polymerase IV [Leptospira santarosai str. 2000030832]
Length = 360
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 129/352 (36%), Positives = 196/352 (55%), Gaps = 22/352 (6%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGF 159
SR +HVDMDAFYA+VE P KGKP+ VG S++ A+YEAR+FGVR+AMP
Sbjct: 3 SRKIIHVDMDAFYASVEQRDFPEYKGKPLIVGGPPNGRSVVAAASYEARKFGVRSAMPCS 62
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS- 218
A +L P IFV F Y SD R++F +Y SLDE YLD+T ++ I
Sbjct: 63 KAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT--FNKKNIPF 120
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISS 277
++IA+E+R+ +++ LT SAGV ++L+AK+ S+ NKPNG VLP+D V FI
Sbjct: 121 AVKIAKEIRSEIFKRTELTASAGVGNSKLIAKLASEKNKPNGLTVVLPDD---VTAFIDP 177
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LPI G+GKVT ++ + GI+T +++ K T ++ + G
Sbjct: 178 LPIGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQHFGKTGIYYYKISRGEDEREV 236
Query: 338 PQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ SE TF + D+ L+R+L EIA ++K G+TLTLK+K F
Sbjct: 237 EPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAGKTLTLKIKFQDFS 296
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQ 439
++TR+ TL + I +++++ A+ L + + ++RL+G+ ++
Sbjct: 297 LKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTSTKAIRLLGINLSH 348
>gi|359687051|ref|ZP_09257052.1| DNA polymerase IV [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418751085|ref|ZP_13307371.1| ImpB/MucB/SamB family protein [Leptospira licerasiae str. MMD4847]
gi|418757063|ref|ZP_13313251.1| ImpB/MucB/SamB family / IMS family HHH motif / ImpB/MucB/SamB
family C-terminal domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|384116734|gb|EIE02991.1| ImpB/MucB/SamB family / IMS family HHH motif / ImpB/MucB/SamB
family C-terminal domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|404273688|gb|EJZ41008.1| ImpB/MucB/SamB family protein [Leptospira licerasiae str. MMD4847]
Length = 367
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 129/349 (36%), Positives = 198/349 (56%), Gaps = 21/349 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R LHVDMDAFYA+VE NPS +GKP+ VG + ++C A+YEAR+FGVR+AMP
Sbjct: 3 RKILHVDMDAFYASVEQRDNPSYRGKPIIVGGPPDSRGVVCAASYEARKFGVRSAMPCSQ 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 219
A +LCP IFV F Y S R++F +Y SLDEA+LD+T+ ++ I
Sbjct: 63 AARLCPSGIFVTPRFEAYKKVSSKIRQIFLEYTDLVEMLSLDEAFLDVTQ--NKKNIPYA 120
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
++A+E+R ++EE LT SAGV+ N+ LAK+ +D NKPNG ++ ++ V FI SL
Sbjct: 121 TQVAKEIREKIFEETQLTASAGVSINKFLAKIATDQNKPNGMTIVRPEQ--VEKFIESLD 178
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+ GIGKVT + GI +++ +K + + +F +V GL
Sbjct: 179 VSVFPGIGKVTLKKMH-ALGIKKGKDLKEKSLEMLDQNFGKSGRWFYAVCRGLDDRPVEP 237
Query: 340 ARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKS+ +E TF+ E+ + ++R+L++IAE L + ++ G+T+TLK+K + F +
Sbjct: 238 FRERKSLGAESTFAKDLENSSEIFRELSDIAEELERRLLQKPFPGKTITLKVKFSDFTQK 297
Query: 399 TRAVTLQKYISSSEDILKHASVLL--------KAELPVSLRLIGLRVTQ 439
TR++T ++ + S LL KA P+ RL+GL ++
Sbjct: 298 TRSITEDYSYLDKNELYRIGSKLLEEFILGSGKAIFPI--RLLGLSLSH 344
>gi|88705924|ref|ZP_01103633.1| DNA polymerase IV [Congregibacter litoralis KT71]
gi|88699995|gb|EAQ97105.1| DNA polymerase IV [Congregibacter litoralis KT71]
Length = 410
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 202/370 (54%), Gaps = 24/370 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +P+L+GKP+AVG + ++ A+YEAR+FGV++AMPG A
Sbjct: 47 RKIIHVDMDAFYASVEQRDDPALRGKPLAVGGSAKRGVVAAASYEARKFGVKSAMPGVTA 106
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
R+ CP+L+FV F Y S +F +Y SLDEAYLD+T G S
Sbjct: 107 RRRCPQLLFVKPRFEVYRAVSQQLHGIFARYTHIIEPLSLDEAYLDVTADLAGLG-SATA 165
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAE +R + E LT SAGV+ N+ +AKV SD NKP+G FV+ + A F+++LP R
Sbjct: 166 IAEAIRGDIRRELRLTASAGVSYNKFIAKVASDQNKPDGVFVVRPEEGA--AFVATLPAR 223
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+ G+G T + + GI T ++ Q L F S A + G
Sbjct: 224 RFFGVGPKTAERMSSL-GIQTGADIRAQTLGFLEQHFGKS-AHYLYRASRGEDYRAVKAD 281
Query: 341 RFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKSI ERT+S ++ D+A L L I +++ + + RGRT+T+K+K A F+
Sbjct: 282 RERKSIGGERTYSDDLSTDEA-LRDALEHIIDIVWERIHRNNARGRTVTIKVKYADFQQI 340
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF---------NEDKVRA 447
TRA ++ + + E + + LL+A LPV +RL+GL ++ E V A
Sbjct: 341 TRARSVSPPVDTREAFERLSRGLLEALLPVPKGVRLLGLTLSSLESSQEPAHTGESGV-A 399
Query: 448 PSDPTQKTLT 457
S P Q++L
Sbjct: 400 ESGPVQESLA 409
>gi|418398635|ref|ZP_12972189.1| DNA polymerase IV [Sinorhizobium meliloti CCNWSX0020]
gi|359507493|gb|EHK80001.1| DNA polymerase IV [Sinorhizobium meliloti CCNWSX0020]
Length = 346
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/340 (36%), Positives = 189/340 (55%), Gaps = 16/340 (4%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE NP L+GKP+AVG ++ A+YEAR+FGV +AMP A++ CPEL
Sbjct: 1 MDAFYASVEQRDNPELRGKPVAVGYPEAPGVVAAASYEARKFGVHSAMPSVTAKRKCPEL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFVP F Y S + +F +Y P SLDEAYLD+TE + ++ EIAEE+R
Sbjct: 61 IFVPHRFDVYRAVSRQIQAIFAEYTPLIEPLSLDEAYLDVTENLKGMQLA-TEIAEEIRA 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPIRKIGGIG 287
+ E LT SAGV+ N+ LAK+ SD KP+G FV+ P A F+ +LP++K G+G
Sbjct: 120 RIRAETQLTASAGVSYNKFLAKIASDQRKPDGLFVITPKHGPA---FVQALPVKKFHGVG 176
Query: 288 KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSIS 347
T ++ + GI T ++ + + +F + G+ R RKS+
Sbjct: 177 PATAEKMKKL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDEREVKPNRIRKSVG 235
Query: 348 SERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRGRTLTLKLKTASFEVRTRAVTL 404
+E TF ED L A + ++ + G+RG+T+TLK+K A F TR+ T+
Sbjct: 236 AEDTFR--EDVHYLEAARAGLKPLIDKVWHYCEASGIRGKTVTLKVKWADFTQITRSKTI 293
Query: 405 QKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNE 442
I+S+ ++ + A +LL P + +RL+G+ ++ ++
Sbjct: 294 VAPIASAAEMGEIAELLLSPIFPAAKGIRLLGVTLSSLDQ 333
>gi|299144467|ref|ZP_07037547.1| DNA polymerase IV [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518952|gb|EFI42691.1| DNA polymerase IV [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 347
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 190/343 (55%), Gaps = 13/343 (3%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGF 159
+ S LH+D+DAFYA+VE L NPSL GKP+ V + S++ TANYEAR++ + +AMP F
Sbjct: 1 MKNSILHIDIDAFYASVEELDNPSLVGKPVVVSGLNDKSIVTTANYEARKYKIHSAMPLF 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+A+KLCP LI P +Y SD K+ KY S+DE Y+DI+E +
Sbjct: 61 MAKKLCPHLIVAPMRRNRYIEKSDEVFKILSKYSDIIEKVSIDECYMDISENKNQ----P 116
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
++I ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ + + +S +
Sbjct: 117 VDIVFSIKKKVKNETGLTVSVGLSYNKFLAKMASDWNKPDGMMIIS--KSEIPQLLSKID 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
I KI G+G ++ LR++ GIN EE+L+ L +F + + + G+ +
Sbjct: 175 IGKIHGLGNKSQEKLRNL-GINKIEELLELDREFLFELFGKMGYEVYDRIR-GIDNRAVT 232
Query: 339 QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKS+ ERTFS T + L L + L+ D++ L +T+TLK+KT +F+V
Sbjct: 233 PNRERKSLGIERTFSDTNNVKELISYLDRYSFELAEDLKNRNLGFKTITLKIKTDNFKVS 292
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIGLRVTQF 440
T + T + IS EDI K+ + + LRLIG+ +
Sbjct: 293 TYSKTYSRAISEYEDIFKNVKDIFEYNYKNQKLRLIGISASNL 335
>gi|386585380|ref|YP_006081782.1| DNA polymerase IV [Streptococcus suis D12]
gi|353737526|gb|AER18534.1| DNA polymerase IV [Streptococcus suis D12]
Length = 355
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 128/364 (35%), Positives = 203/364 (55%), Gaps = 42/364 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
DLSR +HVDMDAF+AA+E NP+LKGKP+ +G ++ T NYEAR FG+ +
Sbjct: 9 DLSRKIIHVDMDAFFAAIEVRDNPALKGKPVIIGADPRLSGGRGVVSTCNYEARAFGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY R++F +Y S+DEAYLD+TE +
Sbjct: 69 AMSSKEAYERCPQAIFISGNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP+G +LP D + ++
Sbjct: 127 LGISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGIL 186
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
+SLP+ K G+GK T L ++ G+ T +++L ++ D F G L
Sbjct: 187 ---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL-------IDRFGRFGFDL 235
Query: 333 -----GSTNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEMLSADMQKE 379
G +N+P R RKSI ERT+ + LLYR +L + + ++A +++
Sbjct: 236 YRKARGISNSPVKVDRVRKSIGKERTY-----RKLLYREEDVLKELISLCQRVAASLKRN 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G +GRT+ LK++ F T+ +L+ Y +E I K L++ ++ +RL+G+ V
Sbjct: 291 GKKGRTIVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEEIGKIEKGIRLLGVTV 350
Query: 438 TQFN 441
T F
Sbjct: 351 TNFQ 354
>gi|410944344|ref|ZP_11376085.1| DNA polymerase IV [Gluconobacter frateurii NBRC 101659]
Length = 379
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 178/313 (56%), Gaps = 12/313 (3%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE NPSL+G+P+AVG ++ A+YEAR FGVR+AMP
Sbjct: 3 SRRIVHIDMDAFYASVEQRDNPSLRGRPLAVGRGEARGVVAAASYEARPFGVRSAMPSLK 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+L+FVP F Y S +F +Y P SLDEAYLD+T+ G S
Sbjct: 63 AKRLCPDLVFVPGRFDVYRAVSAQIHDIFARYTPLIQPLSLDEAYLDLTDYLGAYG-SAT 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+AE +R + +E GLT SAGV+ NR LAK+ SD KP+G FV+ M F++ L +
Sbjct: 122 LVAERIRADIRKETGLTASAGVSYNRFLAKLASDYRKPDGLFVI-TPGMGP-DFVTGLTV 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGLGSTNTP 338
+ GIG T +R GI T ++ + L + H +A F+ + G+
Sbjct: 180 DQFHGIGPATAQKMR-ALGIETGADLRKVD--LPTLMRHFGKSAPFYHGISRGIDERPVV 236
Query: 339 QARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +E+T+ S + K L IA L +Q++ L GRT+TLK+K A+F
Sbjct: 237 VNRERKSLGTEQTYLSDLQKKDEAEAALDLIATKLWLQVQRKQLTGRTVTLKVKYANFRQ 296
Query: 398 RTRAVTLQKYISS 410
TRA TL I+S
Sbjct: 297 ITRARTLPAPITS 309
>gi|398353762|ref|YP_006399226.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
gi|390129088|gb|AFL52469.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
Length = 374
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/348 (35%), Positives = 194/348 (55%), Gaps = 20/348 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEAR+FGV +AMP A
Sbjct: 22 RKIIHIDMDAFYASVEQRDNPELRGKPVAVGGSAARGVVAAASYEARKFGVHSAMPSVTA 81
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFV F Y S+ R++F +Y P SLDEAYLD+TE + I+ +
Sbjct: 82 KRKCPDLIFVIPRFDVYRAVSEQIRQIFAEYTPLIEPLSLDEAYLDVTENLKGMEIA-TD 140
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IAEE+R + GLT SAGV+ N+ LAK+ SD KP+G FV+ P + A F+ +LP+
Sbjct: 141 IAEEIRAKIKATTGLTASAGVSYNKFLAKMASDQRKPDGLFVITPRNGPA---FVEALPV 197
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T ++ + GI T ++ + + + +F + G+
Sbjct: 198 KKFHGVGPATAERMKRL-GIETGLDLKTRSLVFLQEHFGKSGAYFYGIARGIDQREVKPD 256
Query: 341 RFRKSISSERTFSVTEDKALL-----YRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKS+ +E TF+ ED LL ++L + E + + + RT+T+K+K + F
Sbjct: 257 RVRKSVGAEDTFA--ED--LLEFEPASKELVPLVEKVWRYCEANAISARTVTVKIKYSDF 312
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
TR+ TL ++ +I + A LL P S+RL+G+ ++ +
Sbjct: 313 TQATRSRTLPVPVTGPAEIAEIARALLSMVYPFRRSIRLLGVTLSSLD 360
>gi|86360880|ref|YP_472767.1| DNA polymerase IV [Rhizobium etli CFN 42]
gi|86284982|gb|ABC94040.1| DNA-directed DNA polymerase protein [Rhizobium etli CFN 42]
Length = 363
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/345 (35%), Positives = 191/345 (55%), Gaps = 16/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDA+YA+VE NP L+GKP+AVG ++ A+YEAR+FGV +AMP A
Sbjct: 11 RKIIHIDMDAYYASVEQRDNPELRGKPIAVGGSAARGVVAAASYEARKFGVHSAMPSVTA 70
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFVP F Y S R++F +Y P SLDEAYLD+T + I+ E
Sbjct: 71 KRKCPDLIFVPPRFDIYKAVSQQIREIFAEYTPMIEPLSLDEAYLDVTHNLKGMEIA-TE 129
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F+ +LP+
Sbjct: 130 IALEIRARIKAITGLNASAGISYNKFLAKMASDLNKPNGQAVITPRNGPA---FVEALPV 186
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGLGSTNTP 338
+K G+G T + + GI+T ++ KG L + H + +F + G+
Sbjct: 187 KKFHGVGPATAEKMHRL-GIDTGADL--KGKTLEFLVEHFGKSGPYFYGIARGIDERQVK 243
Query: 339 QARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +E TFS R+ L + E + + G+ +T+ LK+K A F
Sbjct: 244 PNRVRKSVGAEDTFSQDLHAYEPAREALQPLIEKVWGYCEANGIGAKTVMLKVKYADFNQ 303
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
TR+ T+ +++ D+ + +LL P +RL+G+ ++
Sbjct: 304 ITRSKTVPIPLAAIADLEEIVGLLLAPIFPPRKGIRLLGVSLSSL 348
>gi|28210190|ref|NP_781134.1| DNA polymerase IV [Clostridium tetani E88]
gi|28202626|gb|AAO35071.1| putative DNA polymerase IV [Clostridium tetani E88]
Length = 352
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/351 (35%), Positives = 197/351 (56%), Gaps = 18/351 (5%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +H+D+DAF+A+VE NP L+GKP+ VG S ++ TA+YEAR++GV +AMP F
Sbjct: 1 MDRIIMHIDLDAFFASVEQRDNPKLRGKPVIVGGTSGRGVVATASYEARKYGVHSAMPVF 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+AR+ CP I+VP+ +Y S K+F + P S+DEAYLDIT RE
Sbjct: 61 MAREKCPNGIYVPSRHDRYREVSKNIFKIFYEITPIVEPVSIDEAYLDITNCGRE----P 116
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
+EI + ++ +++ GLT S G++ N+ LAK+ SD NKPNG ++ D + + LP
Sbjct: 117 LEIVKYIKKEIWKREGLTASMGISYNKFLAKLASDWNKPNGVKIIKKD--MIPNILLPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVG---LGLGSTN 336
I K+ G+GK + + ++ GI E+M + L +F F L + G +
Sbjct: 175 INKVHGMGKKSVEKMNNI-GIFKIEDMYK---LPLDLFIEYFGKFGLEIYERIRGFDNRE 230
Query: 337 TPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKSI +E T T+D + + L ++ +S ++K + G+T+T+K+K F
Sbjct: 231 VQVGRERKSIGNETTLRKDTKDTEEIKKYLYTFSKSISEGLKKNHMWGKTVTVKIKNYKF 290
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFNEDKV 445
E T++ TL+ YI+ E I A +L + + LRLIGL ++ +E K+
Sbjct: 291 ETTTKSKTLKDYINEEEKIYIEACKILDSINIKEPLRLIGLTLSNLSESKI 341
>gi|327312331|ref|YP_004327768.1| DNA polymerase IV [Prevotella denticola F0289]
gi|326945721|gb|AEA21606.1| DNA polymerase IV [Prevotella denticola F0289]
Length = 359
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 201/368 (54%), Gaps = 30/368 (8%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE NP L+GKP+AVG ++ TA+YEAR FGV +AMP A
Sbjct: 2 RKIIHIDMDAFFASVEQRDNPGLRGKPIAVGFDGPRGVVSTASYEARPFGVHSAMPMAQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
R+ CP L+ VP F +Y S VF +Y SLDEA+LD+TE ++G+ +
Sbjct: 62 RRRCPHLVVVPCHFDRYKAVSRQIHAVFHEYTDLVEPISLDEAFLDVTE--NKKGMDLAV 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA E++ + + LT SAG++ N+LLAK+ SD+ KP+G F + DR + F+ SLP+
Sbjct: 120 DIAREIKQKILDRTSLTASAGISYNKLLAKISSDMRKPDGLFTVHPDR--ALGFVGSLPV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K+ G+G T + D+ G+ T ++ Q L VF + + G+ +
Sbjct: 178 EKLWGVGPKTAKRMHDM-GVFTGGQLRQVSRRHLVQVFG-KMGNIYYDFSRGIDNRPVVA 235
Query: 340 ARFRKSISSERTFSVTEDKAL-------LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
RKS+ ERTF ED + LY + E+ E L+ + G GRTLTLKLK
Sbjct: 236 VHERKSVGCERTF--LEDLHVGSKIIIELYHIVLELVERLA----RSGFEGRTLTLKLKW 289
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKA----ELPVSLRLIGLRVTQFNEDKVRAP 448
+ TR++T Q+ + + +DIL A LLK + PV RL+GL V+ +K +
Sbjct: 290 DATTQITRSLTQQRVLRTKDDILPLAKQLLKETSCHDRPV--RLMGLSVSSPLPEKEESS 347
Query: 449 SDPTQKTL 456
P + L
Sbjct: 348 HVPVEGLL 355
>gi|357032073|ref|ZP_09094013.1| DNA polymerase IV [Gluconobacter morbifer G707]
gi|356414300|gb|EHH67947.1| DNA polymerase IV [Gluconobacter morbifer G707]
Length = 376
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/335 (37%), Positives = 183/335 (54%), Gaps = 22/335 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE +P+L+G+P+AVG ++ A+YEAR FGVR+AMP A
Sbjct: 21 RRIVHIDMDAFFASVEQRDHPALRGRPIAVGRGEARGVVAAASYEARPFGVRSAMPSLKA 80
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+L+FVP F Y S R +F +Y P SLDEAYLD+T+ G S
Sbjct: 81 KRLCPDLLFVPPRFDVYRAVSAQIRDIFARYTPLIQPLSLDEAYLDLTDHLGAYG-SATL 139
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-----PNDRMAVMTFIS 276
IAE +R + E GLT SAGV+ NR LAK+ SD KP+G F++ PN F++
Sbjct: 140 IAERIREDIRMETGLTASAGVSYNRFLAKLASDYRKPDGLFLITPAMGPN-------FVA 192
Query: 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
LP+ GIG T +R GI T +++ + A F+ + G+
Sbjct: 193 DLPVSSFHGIGPATARRMR-TLGIETGKDLRDVSLAVLTRHFGKAALFYHGISRGIDDRP 251
Query: 337 TPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 393
R RKS+ +E+T+ D +L L +IA L + + L+ RT+TLK+K A
Sbjct: 252 VVVDRERKSLGTEQTY--LTDLLILSEALEALDQIAAKLWSQSLRRNLQARTVTLKVKYA 309
Query: 394 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV 428
F TRA TL + ++S ++ + +L++ PV
Sbjct: 310 DFRQITRARTLARPVASEAELREVGQILMRPLFPV 344
>gi|349687672|ref|ZP_08898814.1| DNA polymerase IV [Gluconacetobacter oboediens 174Bp2]
Length = 361
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 127/353 (35%), Positives = 191/353 (54%), Gaps = 15/353 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE +P+L+G+P+AVG + ++ A+YEARRFGVR+AMP IA
Sbjct: 8 RRIIHVDMDAFFASVEQRDDPALRGRPLAVGDVGRRGVVAAASYEARRFGVRSAMPSVIA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ CP+L+FVP F Y S +F ++ P SLDEAYLD+T + S
Sbjct: 68 LRKCPDLVFVPPRFDVYRAVSAQIHDIFSRFTPLIQPLSLDEAYLDVTHPLQPYP-SATA 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+++R + E GLT SAG++ N+ LAK+ SD KP+GQFV+ RM F+++LP+
Sbjct: 127 IAQDIRDRIRAETGLTASAGISYNKFLAKLASDYRKPDGQFVI-TPRMG-PDFVATLPVE 184
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGLGSTNTPQ 339
+ GIG T + GI T ++ Q+ L + H ADF+ + G+
Sbjct: 185 QFHGIGPATAARMH-ALGIRTGLDLRQQP--LSRLLRHFGKAADFYYGIARGIDERPVEV 241
Query: 340 ARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R R+SI +ERTF V D A + +++ + L G T+T+K+K F
Sbjct: 242 NRPRRSIGAERTFEVDIHDWAAALDVIMDLSTRVWNRCTARSLTGITVTIKVKYNDFRQI 301
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN-EDKVRAP 448
R T + + + D++ A LL P +RL+G+ V+ D + AP
Sbjct: 302 VRGRTALEPVRDATDLVDRAQGLLAPCFPPPRGIRLLGVTVSGLRARDALAAP 354
>gi|254293831|ref|YP_003059854.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
gi|254042362|gb|ACT59157.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
Length = 360
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 196/337 (58%), Gaps = 15/337 (4%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAF+A+VE +P+L+GKP+AVG ++ A+YEAR +GVR+AM
Sbjct: 6 SRKIIHIDMDAFFASVEQRDDPTLRGKPVAVGGGEARGVVAAASYEAREYGVRSAMASVA 65
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 219
A+K CP+LIFVP F Y S+ R +F +Y SLDEAYLD+T+ +GI S
Sbjct: 66 AKKRCPDLIFVPPRFDVYKSVSNQIRNIFAQYTHLIEPLSLDEAYLDVTDNL--KGIESA 123
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
+IA E+R + +E GLT SAGV+ N+ +AK+ SD NKPNGQ V+P + F++ LP
Sbjct: 124 TQIAMEIRAEILKETGLTASAGVSYNKFIAKLASDENKPNGQCVIPPK--SGEQFVAGLP 181
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTP 338
IR+ G+G VT + + GI T ++ + S L F +S AD++ + G
Sbjct: 182 IRRFYGVGPVTAKKM-ERLGILTGADLKKADLSWLRQNFGNS-ADYYYAAARGKDDRIVQ 239
Query: 339 QARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ ERT+S + E + +L + ++ +L +++ G T+ LK+K + F+
Sbjct: 240 PNRIRKSVGVERTYSKDLFEKEEIL-TETEKLITLLWERIERANAVGHTIVLKVKFSDFK 298
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLI 433
TR+ TL+ I+ E + A +LL LP ++ I
Sbjct: 299 QITRSHTLEHSITEIEHLDVSAQLLL-GHLPRPIKPI 334
>gi|392953721|ref|ZP_10319275.1| DNA-directed DNA polymerase [Hydrocarboniphaga effusa AP103]
gi|391859236|gb|EIT69765.1| DNA-directed DNA polymerase [Hydrocarboniphaga effusa AP103]
Length = 362
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 136/353 (38%), Positives = 196/353 (55%), Gaps = 16/353 (4%)
Query: 97 LEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVR 153
+ A+ R +HVDMDAFYA+V +PSL+GKP+ V G S++C A+YEAR+FGVR
Sbjct: 1 MSASPPAQRKIIHVDMDAFYASVAQRDDPSLRGKPVVVAWRGGRSVVCAASYEARKFGVR 60
Query: 154 AAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR 213
+AMP A +LCP+ IF P DFT+Y S R++F ++ SLDEAYLD+T
Sbjct: 61 SAMPAVRAERLCPDAIFTPPDFTRYRAVSRQVREIFLRHTDLVEPLSLDEAYLDVTTNKT 120
Query: 214 ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVM 272
E + +A+ +R + EE LT SAGVAPN+ LAK+ SD NKP+G FV+ P D +
Sbjct: 121 ELP-TATAVAQCIREQIREELSLTASAGVAPNKFLAKIASDWNKPDGLFVIRPGD---ID 176
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFF-LSVGL 330
+ LP+ ++ G+GKV E L ++ GI + ++ L+ + L A F LS+G+
Sbjct: 177 RVLPPLPVGRLPGVGKVMEGKLAEM-GIGSVGDLRLRTAAELEARFGRYGLRLHQLSLGI 235
Query: 331 GLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 390
G R +SIS+E TF + L + +AE +K GRT+ LKL
Sbjct: 236 DHGEVKP--DRPTQSISAEDTFERDIPLSELEPHIRRMAEKAWNAARKTPRIGRTVVLKL 293
Query: 391 KTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF 440
KTA F++ TR++T + S E A L + LP RL+G+ + F
Sbjct: 294 KTADFQILTRSLTPGRPPESLERFANIAVELRDRVNLPADRLYRLVGVGLGNF 346
>gi|452852653|ref|YP_007494337.1| DNA polymerase IV [Desulfovibrio piezophilus]
gi|451896307|emb|CCH49186.1| DNA polymerase IV [Desulfovibrio piezophilus]
Length = 381
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 128/337 (37%), Positives = 189/337 (56%), Gaps = 15/337 (4%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE L NP L+G P+AVG S ++ A+YE R FGVR+AM AR+LCP++
Sbjct: 1 MDAFYASVEQLDNPELRGLPVAVGGTSDRSVVSAASYEVRTFGVRSAMSVVKARQLCPQI 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE-IAEELR 227
+ VP +Y S + V ++ P AS+DEAYLD T + ER IE + E++
Sbjct: 61 VMVPVRMKRYKEISHMVMGVLKEFSPTVEQASVDEAYLDGTGL--ERLFGPIETVGSEIK 118
Query: 228 TSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPIRKIGGI 286
+ + GLTCS G AP R LAK+ SD++KP+G F++ P+ V TF+ LP+RKI G+
Sbjct: 119 KRMRQVTGLTCSVGAAPVRFLAKIASDMDKPDGMFIIHPHQ---VETFLRDLPVRKIPGV 175
Query: 287 G-KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKS 345
G K+ E + R + TC ++L K G+ + KS
Sbjct: 176 GKKLVETLAR--LRVQTCGDILHKERDFWVERLGKYGGALHDRARGIDPNGVIVSSGAKS 233
Query: 346 ISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL 404
S+E TF T D+ L L E AE + AD+++ G +GRT+TLK+K F+ TR+++L
Sbjct: 234 CSAENTFHEDTTDRETLTTWLLEQAERVGADLRRHGYKGRTITLKIKYTDFKQVTRSLSL 293
Query: 405 QKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQF 440
++ I + A LL+ +L ++RLIG+ V+ F
Sbjct: 294 DTRTDTTSVIFETACTLLRQLDLRRAVRLIGVGVSNF 330
>gi|240142517|ref|YP_002967028.1| DNA polymerase IV [Methylobacterium extorquens AM1]
gi|240012462|gb|ACS43687.1| DNA polymerase IV [Methylobacterium extorquens AM1]
Length = 408
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 139/373 (37%), Positives = 204/373 (54%), Gaps = 36/373 (9%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPG 158
D R +HVDMDAFYA+VE +PSL+G+P+AVG ++ A+YEAR+FGVR+AM
Sbjct: 54 DRPRKIIHVDMDAFYASVEQRDDPSLRGRPIAVGGSRERGVVAAASYEARKFGVRSAMAS 113
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI- 217
A++ CPEL+FV F Y S R +F ++ P SLDEAYLD+TE +G
Sbjct: 114 VTAKRKCPELVFVKPRFEVYREVSMAIRAIFAEHTPIIEPLSLDEAYLDVTENL--KGFE 171
Query: 218 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
+ EIA E++T++ E LT SAGV+ + LAK+ SD KP+G FV+ RM F+ +
Sbjct: 172 TATEIAREIKTAIRERLNLTASAGVSYQKFLAKIASDYRKPDGLFVI-TPRMGP-KFVLT 229
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTN 336
LP+ + GIG TE + + GI T ++ K + L F S A +F + G+
Sbjct: 230 LPVGRFHGIGPATEAKMARL-GIATGADLKSKSLAFLQEHFGKSGA-YFHGIARGVDHRP 287
Query: 337 TPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LSADMQK-------EGLRGRTL 386
R RKS+ +E TF R LA I EM L + K G+RGRT+
Sbjct: 288 VRPDRIRKSVGAENTFE---------RDLAGIEEMREHLQPIVDKVWSRCAATGVRGRTV 338
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFNEDK 444
TLK+K + FE TR+ + + S +D+ A+ LL+ P+ L RL+G+ ++ + ++
Sbjct: 339 TLKVKFSDFEQITRSRSTAVDVGSRDDLEGIAADLLRQLFPMRLGVRLLGVTMSGLDNER 398
Query: 445 VRAPSDPTQKTLT 457
+P Q +L
Sbjct: 399 ----EEPRQLSLA 407
>gi|421836285|ref|ZP_16270813.1| DNA polymerase IV, partial [Clostridium botulinum CFSAN001627]
gi|409741873|gb|EKN41498.1| DNA polymerase IV, partial [Clostridium botulinum CFSAN001627]
Length = 337
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 191/344 (55%), Gaps = 14/344 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE + N LKGKP+ VG + ++ TA+YEAR++GV +AMP F
Sbjct: 1 MDRVIIHVDMDAFFASVEQMDNKKLKGKPVIVGGIGERGVVSTASYEARKYGVHSAMPVF 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
IA+K CP I+VP +Y S+ K+ K P S+DEAYLDIT + E
Sbjct: 61 IAKKRCPFGIYVPGRHERYKEVSNNIFKILYKVTPIIEPVSIDEAYLDITNIKEE----P 116
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
I++AE ++ V E GLT S G++ N+ LAK+ SD NKP+G ++ D + + + LP
Sbjct: 117 IKVAEHIKKRVKNEMGLTLSVGISYNKFLAKLASDWNKPDGIKIIRQDMIP--SILMPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGSTNTP 338
I KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 175 INKIHGIGKKSVEKLNNI-GIYTVEDMHKLSRDFCIEYFGKFGVEIYERI-RGIDYREVK 232
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKSI E T +K + + L + + +S ++ K G+T+T+K+KT++F+
Sbjct: 233 VSRERKSIGKEITLKKDITNKEEMKKYLLDFSNKVSTNLYKRNSGGKTVTVKIKTSNFQT 292
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQF 440
TR+ T+ YI ++I A +L +RLIGL V+
Sbjct: 293 HTRSKTVNDYIRDKDEIYNIACDILEHINFKEPIRLIGLTVSNL 336
>gi|424892013|ref|ZP_18315593.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM2297]
gi|424893756|ref|ZP_18317336.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393183294|gb|EJC83331.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393185037|gb|EJC85074.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 362
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 187/343 (54%), Gaps = 12/343 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+GKP+AVG ++ A+YEAR FGV +AMP A
Sbjct: 10 RKIVHVDMDAFYASVEQRDNPELRGKPIAVGGSAARGVVAAASYEARAFGVHSAMPSVTA 69
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ C +LIFVP F Y S R++F +Y P SLDEAYLD+TE + I+ E
Sbjct: 70 KRKCLDLIFVPPRFDVYKAVSQQIREIFAEYTPLIEPLSLDEAYLDVTENLKGMDIA-TE 128
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + +A F+ +LP+
Sbjct: 129 IALEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPRNGLA---FVEALPV 185
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T + + GI+T ++ +K + +F + G+
Sbjct: 186 KKFHGVGPATAEKMHRL-GIDTGADLKEKTLEFLVEHFGKSGPYFYGIARGIDERRVKPD 244
Query: 341 RFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TFS R+ L + E + A + + +T+TLK+K A F T
Sbjct: 245 RVRKSVGAEDTFSQDLHSYEPAREGLQPLIEKVWAYCEANAIGAKTVTLKVKYADFNQIT 304
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
R+ T+ + D+ LL P+ +RL+G+ ++
Sbjct: 305 RSKTVPAALPGITDLEDIVDFLLAPIFPLRKGIRLLGVSLSSL 347
>gi|340385234|ref|XP_003391115.1| PREDICTED: DNA polymerase kappa-like, partial [Amphimedon
queenslandica]
Length = 336
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 138/214 (64%), Gaps = 9/214 (4%)
Query: 9 ASSSENPRPWQSYHT--------VYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERK 60
S++E+P P + + + TN KAGM+G+DK K+ +++ + SKGSKY+ENE +K
Sbjct: 13 GSNAESPGPMEQLQSSPPLSRIGLNTN-KAGMEGLDKTKIDQIIIQASKGSKYYENELQK 71
Query: 61 EAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVE 120
E +++KI+ M +L+ I +D I +E RDL+ +HVDMDAFYAAVE
Sbjct: 72 ERKVKEKIDTMLKELKQLSPSAIETSVAASDNDIEAIELRRDLNHIIVHVDMDAFYAAVE 131
Query: 121 TLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTY 180
+PSL PMAVG SM+ T+NY ARR+GVRAAMPGFIA+KLCP+L+ V + F+KY
Sbjct: 132 MRDDPSLLNVPMAVGGQSMLSTSNYLARRYGVRAAMPGFIAKKLCPQLVIVKSHFSKYQE 191
Query: 181 YSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
S R++ YDP F + LDEAYLDITE E
Sbjct: 192 VSQTVREILSNYDPLFSSVGLDEAYLDITEYVTE 225
>gi|83814230|ref|YP_445661.1| DNA polymerase IV [Salinibacter ruber DSM 13855]
gi|83755624|gb|ABC43737.1| putative DNA polymerase IV [Salinibacter ruber DSM 13855]
Length = 373
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/350 (36%), Positives = 189/350 (54%), Gaps = 15/350 (4%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPS-LKGKPMAVG---TMSMICTANYEARRFGVRAAMPGF 159
+R +HVDMDAFYA +E P GKP+AVG ++ TA+YEAR +GV +A P
Sbjct: 18 ARRIVHVDMDAFYAQIEQRDFPDRYAGKPIAVGGDPPRGVVQTASYEARPYGVHSAQPAV 77
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
A + CP+LIFV Y S RK+ +Y SLDEAYLD+TE R SG
Sbjct: 78 EADRKCPDLIFVSPRMDVYQEESKRIRKILRRYTDLVEPLSLDEAYLDVTEPKTGRP-SG 136
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IA LR +YEE GLT SAGV P + +AKV SD++KP+G V+ D M FI+ LP
Sbjct: 137 TLIARRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKPDGLTVVRPDEQ--MEFIAQLP 194
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
I K GIG VT +++ GI T ++ + F ++ +G
Sbjct: 195 IEKFHGIGPVTAAKMQE-LGIQTGADLQETPERTLIHHFGKRGRHFKTLAVGTDDRPVQP 253
Query: 340 ARFRKSISSERTFSVTEDKA---LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ +ERTF ED A + +L+ IAE ++ +++ +GRT+TLKLK+ +
Sbjct: 254 DRDRKSVGAERTFP--EDIARAETMLDRLSPIAERVAQRLRQANRKGRTVTLKLKSHDHQ 311
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 444
V TR T+ + + + + ++ LL+ P +RL+G+ V+ +++
Sbjct: 312 VSTRQTTVDRPLRAEDALMTITERLLRRPHPPDEPVRLLGISVSSLTDEE 361
>gi|85859606|ref|YP_461807.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
gi|85722697|gb|ABC77640.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
Length = 362
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 126/354 (35%), Positives = 196/354 (55%), Gaps = 17/354 (4%)
Query: 101 RDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS------MICTANYEARRFGVRA 154
+ R LH+DMDAF+A+VE P LKGKP+ +G M ++ TANYEAR++G+ +
Sbjct: 10 KSFGRRILHIDMDAFFASVEENRKPELKGKPVVIGGMGDPSKRGVVSTANYEARKYGISS 69
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AMP A KLCP IF+P D+ Y S + V +DEAYLDI+E R+
Sbjct: 70 AMPLRTAYKLCPRAIFLPVDYKAYLAVSRYFKAVLLNITTIMEDVGIDEAYLDISE-NRD 128
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 274
+ +I+E+++T +YE+ GLTCS G+APN+LLAK+ SD+NKP+G + + +
Sbjct: 129 ---TDEKISEKIKTGIYEKTGLTCSIGIAPNKLLAKIASDMNKPDGLTIFSGED--IENR 183
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLG 333
+ LPIRK+ GIG TE L+ I T ++ +L A F S + G+
Sbjct: 184 LWPLPIRKLYGIGPKTEEHLK-ALNIATIGQLAALPPEVLVARFGPSYGHYLHEASRGID 242
Query: 334 STNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
+ + KS S E TF V E + + R LAE+ + + +D+ ++G R + LK++
Sbjct: 243 ESPIITSWEPKSFSREITFQVDEKNWQAIARTLAELTKEVVSDLAEKGYAARNVILKIRY 302
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELP-VSLRLIGLRVTQFNEDK 444
+ F TRA ++ + + E+I + A S L + +L +RL+G+RV + + K
Sbjct: 303 SDFRTVTRACSIDQAVGKEEEIRRMAFSCLKRVDLSGKKIRLVGVRVGRLEKIK 356
>gi|407451872|ref|YP_006723597.1| nucleotidyltransferase/DNA polymerase [Riemerella anatipestifer
RA-CH-1]
gi|403312856|gb|AFR35697.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-1]
Length = 360
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 186/321 (57%), Gaps = 9/321 (2%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT--MSMICTANYEARRFGVRAAMPGFIAR 162
R +H+DMDAFYA+VE P LKGKP+AVG ++ A+YEAR++GVR+AM +A+
Sbjct: 6 RKIIHIDMDAFYASVEQRDFPELKGKPVAVGGEHRGVVAAASYEARKYGVRSAMSSVVAK 65
Query: 163 KLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGIE 221
K CP++IFV F +Y S+ R +F +Y SLDEAYLD+T ++GI S
Sbjct: 66 KKCPQIIFVKPRFHRYKEISEQIRAIFFEYTDLVEPLSLDEAYLDVTH--NKKGIDSANL 123
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+E+R ++E GLT SAG++ N+ LAKV SDINKPNGQ + + V++F+ +LPI
Sbjct: 124 IAKEIRRKIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIHPTK--VLSFLENLPIE 181
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
+ GIG VT + + + GI +++ +K + + G+ + R
Sbjct: 182 RFYGIGNVTANKMYQL-GIYKGKDLKEKSLEYLITHFGKMGRHYYDIVRGIHRSEVKPHR 240
Query: 342 FRKSISSERTFSVTED-KALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
KS+ E T++ D + + ++L +A+ L +K+ ++G++LTLK+K F + TR
Sbjct: 241 IAKSVGVEHTYADDIDTEKDIDQQLIRLAQELYERAEKKQVKGKSLTLKIKYKDFSLFTR 300
Query: 401 AVTLQKYISSSEDILKHASVL 421
+ T Y + E++ + A L
Sbjct: 301 SKTQDLYFETEEEMYQIARFL 321
>gi|148254691|ref|YP_001239276.1| DNA polymerase IV [Bradyrhizobium sp. BTAi1]
gi|146406864|gb|ABQ35370.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Bradyrhizobium sp. BTAi1]
Length = 354
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 130/349 (37%), Positives = 196/349 (56%), Gaps = 22/349 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEAR+FGVR+AMP A
Sbjct: 3 RKIIHIDMDAFYASVEQRDNPELRGKPVAVGGSRERGVVAAASYEARKFGVRSAMPSVTA 62
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI- 220
++ CP+LIFV F Y S R +F ++ P SLDEAYLD+TE + GI
Sbjct: 63 KRQCPDLIFVKPRFEVYKAISLQVRAIFAEHTPLIEPLSLDEAYLDVTE-----NLQGIP 117
Query: 221 ---EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
+IA +R ++ E GL SAG++ N+ LAK+ SD KPNGQ+V+ + F+ +
Sbjct: 118 LARDIALRIRETIKTETGLNASAGISYNKFLAKLASDHRKPNGQYVISPEMGP--AFVET 175
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
LP+ K GIG T L GI T ++ Q + L F S A ++ + G+
Sbjct: 176 LPVGKFHGIGPATAAKL-TALGIRTGLDIRRQSLAFLQQHFGKSGA-YYYWISRGIDERP 233
Query: 337 TPQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
R RKS+ +E TF VT+ L + +L + + + + G GRT+TLK+K +
Sbjct: 234 VRADRIRKSVGAETTF-VTDLTELEPMTAELRPLIDKVWRHCESTGKSGRTVTLKVKFSD 292
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
FE+ TR+ +L ++ D+ + A LL+AE+P+ +RL+G+ ++
Sbjct: 293 FEIITRSRSLLSPVTGRTDLERLAVGLLQAEMPLPKPVRLLGVALSSLQ 341
>gi|404406098|ref|ZP_10997682.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Alistipes sp. JC136]
Length = 353
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 127/338 (37%), Positives = 187/338 (55%), Gaps = 18/338 (5%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIARKL 164
+HVDMDAFYA++E P L+G+P+AVG ++ TA+YEAR FGVR+A+ +AR+L
Sbjct: 6 IHVDMDAFYASIEQRDRPELRGRPIAVGYDGPRGVVATASYEARPFGVRSAISSVLARRL 65
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 224
CP LIFVP F Y S R +F Y SLDEA+LD++ V S +A
Sbjct: 66 CPALIFVPARFDVYKAVSQQIRDIFHDYTDLVEPLSLDEAFLDVSHVR-----SATLVAR 120
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 284
E++ + E GLT SAG++ N++LAK+ SD KP+G FV+P DR + F++ LP+ +
Sbjct: 121 EIKARIRAETGLTASAGISVNKMLAKIASDYRKPDGLFVIPPDR--IDAFVAELPVERFF 178
Query: 285 GIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQARFR 343
GIG+VT + GI T ++ Q L L F + ++ G+ R R
Sbjct: 179 GIGEVTAEKMH-ALGIRTGADLRQWEELELVRHFGKAGRSYY-GYARGIDPRPVVPNRIR 236
Query: 344 KSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAV 402
KS+ +E TF T D+ +L +L ++ E + + + RGRT+ LKLK F TR+
Sbjct: 237 KSLGAETTFEADTADREVLLGELEQVCEEVWRRLVRHKFRGRTVVLKLKFDDFRQITRSR 296
Query: 403 TLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRV 437
TL + + S + + A LL A + +RLIG+ V
Sbjct: 297 TLSRPVDSHDGLCLVAGELL-AGVDFGGHRIRLIGVTV 333
>gi|410450101|ref|ZP_11304144.1| ImpB/MucB/SamB family protein [Leptospira sp. Fiocruz LV3954]
gi|410016110|gb|EKO78199.1| ImpB/MucB/SamB family protein [Leptospira sp. Fiocruz LV3954]
Length = 360
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 202/374 (54%), Gaps = 33/374 (8%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGF 159
SR +HVDMDAFYA+VE P KGKP+ VG S++ A+YEAR+FGVR+AMP
Sbjct: 3 SRKIIHVDMDAFYASVEQRDFPEYKGKPLIVGGPPNGRSVVAAASYEARKFGVRSAMPCS 62
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS- 218
A +L P IFV F Y SD R++F +Y SLDE YLD+T ++ I
Sbjct: 63 KAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT--FNKKNIPF 120
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISS 277
++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VLP+D V FI
Sbjct: 121 AVKIAKEIRSEIFKRIELTASAGVGNSKFIAKLASEKNKPNGLTVVLPDD---VTAFIDP 177
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LPI G+GKVT ++++ GI+T +++ K T ++ + G
Sbjct: 178 LPIGSFHGVGKVTAQKMKEL-GIHTGKDLRTKNINELVQHFGKTGIYYYKISRGEDEREV 236
Query: 338 PQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ SE TF + D+ L+R+L EIA ++K G+TLTLK+K F
Sbjct: 237 EPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAGKTLTLKIKFQDFS 296
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQFNEDKVRA 447
++TR+ TL + I +++++ A+ L + + ++RL+G+ +
Sbjct: 297 LKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTPTKAIRLLGINL---------- 346
Query: 448 PSDPTQKTLTNFMT 461
S PT K + F T
Sbjct: 347 -SHPTDKEPSLFQT 359
>gi|440782777|ref|ZP_20960697.1| DNA polymerase IV [Clostridium pasteurianum DSM 525]
gi|440219823|gb|ELP59033.1| DNA polymerase IV [Clostridium pasteurianum DSM 525]
Length = 347
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 201/349 (57%), Gaps = 14/349 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ + +HVDMDAF+A+VE + N SL+GKP+ VG MS ++ T +YEAR FGVR+AMP +
Sbjct: 1 MDKVIMHVDMDAFFASVEVIDNRSLRGKPVIVGGMSERGVVATCSYEARAFGVRSAMPIY 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+A+ CP IF+P + +Y S+ +F + S+DEAYLD+T V R+
Sbjct: 61 MAKAKCPNGIFLPVRYERYKEISNKIFDIFNEITTLIEPLSIDEAYLDLTHVNRD----S 116
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
+ IA ++ + +E GL S G++ N+ LAK+ SD NKPNG ++ + + F L
Sbjct: 117 LYIASFIKNRIKKETGLNISIGLSYNKFLAKLASDWNKPNGLKIIKKSDVPKILF--PLS 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTP 338
I K+ G+GK + L ++ GI T EE+ + + L +F + + + G+ +
Sbjct: 175 IDKVHGLGKKSVKKLNNI-GIFTVEELYKLSVNFLVDLFGKFGPEIYDRIR-GIDNREVK 232
Query: 339 QARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKSI E T + T+D+ + + A ++ M+ + L G+ +T+K++TASF
Sbjct: 233 ILRERKSIGKETTLINDTDDEEDIKPYIKSFASSIANIMKNKNLSGKNITIKIRTASFIN 292
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKV 445
T++ TL YI+S EDI + A S+L K +L +RLIG+ ++ F E K+
Sbjct: 293 HTKSKTLTYYINSEEDIYREACSILEKLKLEEKIRLIGISISSFKEKKI 341
>gi|15677305|ref|NP_274460.1| DNA polymerase IV [Neisseria meningitidis MC58]
gi|22095639|sp|Q9JYS8.1|DPO4_NEIMB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|7226689|gb|AAF41808.1| DNA-damage-inducible protein P [Neisseria meningitidis MC58]
Length = 318
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 178/307 (57%), Gaps = 15/307 (4%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVT 403
+ TR +T
Sbjct: 295 IITRTLT 301
>gi|225871905|ref|YP_002753359.1| DNA polymerase IV [Acidobacterium capsulatum ATCC 51196]
gi|225791585|gb|ACO31675.1| putative DNA polymerase IV [Acidobacterium capsulatum ATCC 51196]
Length = 374
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 137/357 (38%), Positives = 201/357 (56%), Gaps = 20/357 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE P L+GKP+ V G S++C A+YEAR+FGVR+AMP A
Sbjct: 14 RKIVHVDMDAFYASVEQRDAPELRGKPVVVAWRGRRSVVCAASYEARQFGVRSAMPAVTA 73
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
+LCP+ IFVP DFT+Y S R++F ++ SLDEAYLD+T + G+ +
Sbjct: 74 ERLCPQAIFVPPDFTRYKAVSRAVREIFERHTDLIEPLSLDEAYLDVTH--NKTGLPTAT 131
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 279
++A +R + EE LT SAGVAPN+ LAK+ SD KP+G FV+ P D + TF+ L
Sbjct: 132 KVAITIRRQIREELSLTASAGVAPNKFLAKIASDWRKPDGLFVIQPQD---LATFLPPLA 188
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV-GLGLGSTNTP 338
+ +I G+GKVTE L GI T + LQ L A + + L + L G ++P
Sbjct: 189 VGRIPGVGKVTEERLAR-LGIRTAGD-LQHYDL--ATLESNFGRYGLRLYHLARGVDHSP 244
Query: 339 QA--RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R KS+S+E TF + + ++E + ++E RT+ LKLKT F
Sbjct: 245 VTPNRPTKSVSAEDTFEADIPLSATEPVIRRLSEKVWNASRREARIARTVVLKLKTGDFH 304
Query: 397 VRTRAVTLQKYISSSEDILKHA-SVLLKAELPVS--LRLIGLRVTQFNEDKVRAPSD 450
+ TR++T + +S E++ A S+ + +L RLIG+ ++ F + + A D
Sbjct: 305 IHTRSLTPETPPASCEELTAIALSLRERVDLGADRLYRLIGVGLSNFRDPEPDAAED 361
>gi|152979117|ref|YP_001344746.1| DNA polymerase IV [Actinobacillus succinogenes 130Z]
gi|150840840|gb|ABR74811.1| DNA-directed DNA polymerase [Actinobacillus succinogenes 130Z]
Length = 357
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 140/360 (38%), Positives = 197/360 (54%), Gaps = 32/360 (8%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPG 158
R +H+DMD FYAAVE PSL GKP+AVG S ++ T NYE R+FG R+AMP
Sbjct: 5 FQRKIIHIDMDCFYAAVEMREAPSLVGKPVAVGGHSRQRGVLTTCNYEVRKFGCRSAMPT 64
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS 218
A KLCP+LI +P T Y S ++F +Y SLDEAYLD+T+ + G S
Sbjct: 65 AQAVKLCPDLIVLPVRMTLYKQVSQQIHQIFHRYTDIIEPLSLDEAYLDVTDSGKCCG-S 123
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
IA+E+R ++++E LT SAG+AP + LAK+ SD NKPNGQFV+ + V F+ +L
Sbjct: 124 ATWIAQEIRQAIFDELHLTASAGIAPLKFLAKIASDQNKPNGQFVINPEN--VTEFVRTL 181
Query: 279 PIRKIGGIGKVT-EHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTN 336
P+RKI G+GKVT EH+L G+ TCE++ G S+L F + G+
Sbjct: 182 PLRKIPGVGKVTSEHLLE--MGLYTCEDVQHAGLSVLLNRFGKIGKRIW-DFSHGIDERE 238
Query: 337 TPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG---------RTLT 387
R RKS+ ERT S ++ L + +A + E L +++++ LR R +
Sbjct: 239 VQPHRERKSVGVERTLS--QNIFTLEQGMA-VLEELCSELKRRILRAKPDISLSRYRKMG 295
Query: 388 LKLKTASFEVRT---RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 444
+KLK F+V T AV Q+ E S + + S+RL+GL VT E+K
Sbjct: 296 VKLKFDDFQVTTLEKSAVEFQQ-----ETFATLLSQIWQRAEGRSVRLVGLHVTIPEEEK 350
>gi|114321922|ref|YP_743605.1| DNA-directed DNA polymerase [Alkalilimnicola ehrlichii MLHE-1]
gi|122310678|sp|Q0A4X2.1|DPO4_ALHEH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|114228316|gb|ABI58115.1| DNA-directed DNA polymerase [Alkalilimnicola ehrlichii MLHE-1]
Length = 355
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 197/343 (57%), Gaps = 16/343 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +HVDMDAFYA+VE P L+G+P+ VG ++ A+YEARR G+ +AMP +
Sbjct: 4 RKIIHVDMDAFYASVEQRDRPGLRGRPVVVGGDPNGRGVVAAASYEARRHGIHSAMPAWR 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A +LCP+ +F+ F Y S + +F +Y P SLDEAYLD+++ C RG S
Sbjct: 64 AARLCPDAVFLRPRFDVYRSISAQIQALFREYTPLVEPLSLDEAYLDVSD-CPRRGGSAT 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA E+R ++E+ GLT SAGV+ N+ LAK+ SD++KP+G V+P ++ F+++LP+
Sbjct: 123 LIAREIRARIHEQTGLTASAGVSCNKFLAKIASDLDKPDGLHVIPPEQ--AEAFVAALPV 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
KI G+G+ T + + G+ T ++ + L S A F+ + G
Sbjct: 181 GKIHGVGQATRQRM-ERMGVRTGADLRRLTLLELQRAFGSRARFYYELARGRDERPVRPR 239
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TF + A + ++A +A+ ++A + + GL GRT+TLK+K F T
Sbjct: 240 RERKSVGAETTFGEDLNNPAEMLERMAPLADKVAASLHRRGLAGRTVTLKVKYHDFRQIT 299
Query: 400 RAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVT 438
R+++ + + S+++I LL+ + PV RL+G+ V+
Sbjct: 300 RSLS-GRPVQSADEIRARLPALLQDTEAGDRPV--RLLGVTVS 339
>gi|339017671|ref|ZP_08643821.1| DNA polymerase IV [Acetobacter tropicalis NBRC 101654]
gi|338753217|dbj|GAA07125.1| DNA polymerase IV [Acetobacter tropicalis NBRC 101654]
Length = 367
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 174/317 (54%), Gaps = 14/317 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP+L+G P+AVG ++ A+YEAR FGVR+AMP +A
Sbjct: 6 RRIIHIDMDAFYASVEQRDNPNLRGLPVAVGRSRERGVVAAASYEARTFGVRSAMPSVVA 65
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP L+FVP F Y S+ +F +Y SLDEAYLD+T+ R + I
Sbjct: 66 KRKCPNLVFVPPRFEVYRAVSNQIHAIFARYTALIQPLSLDEAYLDVTQPLLPRPYATI- 124
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+E+R ++ E GLT SAG++ N+ LAK+ SD KPNGQFV+P A F++ LP+
Sbjct: 125 IAQEIRAAILAETGLTASAGISYNKFLAKLASDYRKPNGQFVIPPG--AGEAFVADLPVS 182
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
GIG T + + GI T ++ Q S L F + A + G+ G N P
Sbjct: 183 AFHGIGPATAARM-NSLGIYTGADLRTQSLSTLAHHFGKAAAFYH---GIARGEDNRPVE 238
Query: 341 --RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKSI E TF A L+ L +++ + K L GRT+TLKL+ F
Sbjct: 239 VNRPRKSIGKETTFERDIRLPADLHAALGNLSQAVWQASAKRTLSGRTVTLKLRYEDFTQ 298
Query: 398 RTRAVTLQKYISSSEDI 414
TR+ +L + S +
Sbjct: 299 LTRSKSLPHCVQGSAQL 315
>gi|401888778|gb|EJT52727.1| hypothetical protein A1Q1_02062 [Trichosporon asahii var. asahii
CBS 2479]
Length = 618
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 141/419 (33%), Positives = 216/419 (51%), Gaps = 78/419 (18%)
Query: 39 KVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQKV---ADKRIL 95
++ +++ E SKGSK++EN+ RK+ + +KI A+ +L + +K+ AD+ ++
Sbjct: 116 EINRIIAEASKGSKFYENQVRKDKELTEKIAWFCAKRDELLRE--TPREKILADADRILM 173
Query: 96 ELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAA 155
E+EA RDLS++ +HVD+DAFYAAVE +PSLKGK VG ++ TA+
Sbjct: 174 EVEADRDLSQTIVHVDVDAFYAAVECKRDPSLKGKAFGVG-QGVLTTASLTGS------- 225
Query: 156 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCK------------YDPNFMAASLDE 203
P F YT S R+V K YD N M A LDE
Sbjct: 226 ---------------TPLHFDLYTEASRKIREVLLKVSYAILHRADIQYDANLMMAGLDE 270
Query: 204 AYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFV 263
IT ++ ++ +E E+LR V GLT SAG+APNR+LA KPNG F
Sbjct: 271 G---ITGYIQQHDVTALEAVEKLRAEVEAATGLTISAGIAPNRMLA-------KPNGVFE 320
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 323
L +R ++ F+ LP+RKI G G+VTE L + FG+ L +H
Sbjct: 321 LEFNRATIVKFMHDLPVRKIPGFGRVTERCL-EGFGVE-----------LTGSKAH---- 364
Query: 324 FFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 383
+G+ S + RKS+ ERTF + + +LA IAE L D+++ G
Sbjct: 365 ----LGIADNSVQPYKREERKSVGVERTFRDKWEDEDILAELANIAEELEDDLKRLQYSG 420
Query: 384 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 442
+T+T+K K ++E ++RA +++KYI++ +DIL ELPV +RL+G+R++ +
Sbjct: 421 KTVTVKYKLHTYESKSRAQSVKKYINTKDDIL--------PELPVRIRLLGIRLSNLKD 471
>gi|260593234|ref|ZP_05858692.1| DNA-directed DNA polymerase [Prevotella veroralis F0319]
gi|260534791|gb|EEX17408.1| DNA-directed DNA polymerase [Prevotella veroralis F0319]
Length = 362
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 137/352 (38%), Positives = 203/352 (57%), Gaps = 20/352 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE NP L+GKP+AVG ++ TA+YEAR +GV +AM A
Sbjct: 2 RKIIHIDMDAFFASVEQRDNPELRGKPIAVGYDGPRGVVSTASYEARPYGVHSAMSIAQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
++ CP+LI VP F +Y S +VF +Y SLDEA+LD+TE ++GI+ +
Sbjct: 62 KRRCPDLIIVPCHFERYKEVSGQIHEVFHEYTDLVEPISLDEAFLDVTE--NKKGIALAV 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA++++ ++E LT SAGV+ N+LLAK+ SDI KPNG +++ +R M FI+ LPI
Sbjct: 120 DIAKDIKQKIFERTSLTASAGVSYNKLLAKIASDIRKPNGIYIVHPER--AMNFIARLPI 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP 338
K+ GIG T + ++ G+ T E+ L+K S L VF + G+
Sbjct: 178 EKLWGIGPKTAIKMHEM-GVFTGEQ-LRKISYNHLVQVFG-KMGKVYYDFSRGIDERPVV 234
Query: 339 QARFRKSISSERTFSVTED---KALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+R RKS+ ERTF ED K+ + +L I L + + GRTLTLKLK +
Sbjct: 235 ISRERKSVGCERTF--LEDLHVKSKIVIELYHITLELVERLSRSKFEGRTLTLKLKWDAT 292
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLK-AELPV-SLRLIGLRVTQFNEDKV 445
TR++T +K + + EDIL A LL+ E +RL+GL V+ D++
Sbjct: 293 TQITRSLTQEKILRTKEDILPLAKQLLRETEYETRPIRLMGLSVSFPTNDEI 344
>gi|421113191|ref|ZP_15573639.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. JET]
gi|410801366|gb|EKS07536.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. JET]
Length = 360
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 133/374 (35%), Positives = 202/374 (54%), Gaps = 33/374 (8%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGF 159
SR +HVDMDAFYA+VE P KGKP+ VG S++ A+YEAR+FGVR+AMP
Sbjct: 3 SRKIIHVDMDAFYASVEQRDFPEYKGKPLIVGGPPNGRSVVAAASYEARKFGVRSAMPCS 62
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS- 218
A +L P IFV F Y SD R++F +Y SLDE YLD+T ++ I
Sbjct: 63 KAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT--FNKKNIPF 120
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISS 277
++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VLP+D V FI
Sbjct: 121 AVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLPDD---VTAFIDP 177
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ G+GKVT ++++ GI+T +++ K T ++ + G
Sbjct: 178 LPVGSFHGVGKVTAQKMKEL-GIHTGKDLRTKNINELVQHFGKTGIYYYKISRGEDEREV 236
Query: 338 PQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ SE TF + D+ L+R+L EIA ++K G+TLTLK+K F
Sbjct: 237 EPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAGKTLTLKIKFQDFS 296
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQFNEDKVRA 447
++TR+ TL + I +++++ A+ L + + ++RL+G+ +
Sbjct: 297 LKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTPTKAIRLLGINL---------- 346
Query: 448 PSDPTQKTLTNFMT 461
S PT K + F T
Sbjct: 347 -SHPTDKEPSLFQT 359
>gi|418743619|ref|ZP_13299980.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. CBC379]
gi|410795642|gb|EKR93537.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. CBC379]
Length = 360
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 128/352 (36%), Positives = 195/352 (55%), Gaps = 22/352 (6%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGF 159
SR +HVDMDAFYA+VE P KGKP+ VG S++ A+YEAR+FGVR+AMP
Sbjct: 3 SRKIIHVDMDAFYASVEQRDFPEYKGKPLIVGGPPNGRSVVAAASYEARKFGVRSAMPCS 62
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS- 218
A +L P IFV F Y SD R++F +Y SLDE YLD+T ++ I
Sbjct: 63 KAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT--FNKKNIPF 120
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISS 277
++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VLP+D V FI
Sbjct: 121 AVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLPDD---VTAFIDP 177
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LPI G+GKVT ++ + GI+T +++ K T ++ + G
Sbjct: 178 LPIGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQHFGKTGIYYYKISRGEDEREV 236
Query: 338 PQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ SE TF + D+ L+R+L EIA ++K G+TLTLK+K F
Sbjct: 237 EPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAGKTLTLKIKFQDFS 296
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQ 439
++TR+ TL + I +++++ A+ L + + ++RL+G+ ++
Sbjct: 297 LKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTPTKAIRLLGINLSH 348
>gi|86156570|ref|YP_463355.1| DNA-directed DNA polymerase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85773081|gb|ABC79918.1| DNA-directed DNA polymerase [Anaeromyxobacter dehalogenans 2CP-C]
Length = 418
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 129/354 (36%), Positives = 200/354 (56%), Gaps = 20/354 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R+ LH+D+DAFYA+VE L +P L+G+P+ VG ++C A+YEARRFGVR+A+P A
Sbjct: 11 RTILHLDLDAFYASVEQLDHPELRGRPVIVGGTGNRGVVCAASYEARRFGVRSALPTARA 70
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVF---CKYDPNFMAASLDEAYLDITEVCRERGIS 218
R+LCP+ +F+P F + YS+L+R+VF +Y P SLDEA+LD+T R
Sbjct: 71 RRLCPDGVFLPPRFGR---YSELSRRVFDVYRRYTPLVEPLSLDEAFLDVT-ASRALHGG 126
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
G +IA ++ +V E GL SAGVA ++ AK+ +D+ KP+G V+P V F++ L
Sbjct: 127 GPDIARAIKAAVRGECGLAVSAGVADVKMAAKIATDLGKPDGLVVVPPG--GVAAFLAPL 184
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNT 337
P+ ++ G+G+VTE LR + G+ T ++ + S L A + A ++ G
Sbjct: 185 PVGRLWGVGEVTEAALRRI-GVATIGDLARMPESALAAALGPTHARGLRALACGEDPREV 243
Query: 338 PQARFRKSISSERTFSVTED---KALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
KS+ +E TF +D + L R+L A ++ ++ GL G +TLK+K A
Sbjct: 244 VPDEEAKSVGAEDTFD--QDLLGRPALERELLAQAGTVARRLRAAGLAGHVVTLKVKYAD 301
Query: 395 FEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVRA 447
F + TR VTL++ I A + L + +L +RL G+ V+ F D+ R
Sbjct: 302 FTLVTRRVTLERATDDDRAIFDAACAQLARVDLRRPVRLTGISVSGFAGDEERG 355
>gi|313206275|ref|YP_004045452.1| DNA-directed DNA polymerase [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|386321740|ref|YP_006017902.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-GD]
gi|442314536|ref|YP_007355839.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-2]
gi|312445591|gb|ADQ81946.1| DNA-directed DNA polymerase [Riemerella anatipestifer ATCC 11845 =
DSM 15868]
gi|325336283|gb|ADZ12557.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-GD]
gi|441483459|gb|AGC40145.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-2]
Length = 360
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/321 (36%), Positives = 184/321 (57%), Gaps = 9/321 (2%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT--MSMICTANYEARRFGVRAAMPGFIAR 162
R +H+DMDAFYA+VE P LKGKP+ VG ++ A+YEAR++GVR+AM +A+
Sbjct: 6 RKIIHIDMDAFYASVEQRDFPELKGKPVVVGGEHRGVVAAASYEARKYGVRSAMSSVVAK 65
Query: 163 KLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGIE 221
K CP++IFV F +Y S+ R +F +Y SLDEAYLD+T ++GI S
Sbjct: 66 KKCPQIIFVKPRFHRYKEVSEQIRTIFFEYTDLVEPLSLDEAYLDVTH--NKKGIVSANL 123
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+E+R ++E GLT SAG++ N+ LAKV SDINKPNGQ + + V++F+ +LPI
Sbjct: 124 IAKEIRQKIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIHPTK--VLSFLENLPIE 181
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
+ GIG VT + + + GI +++ +K + + G+ + R
Sbjct: 182 RFYGIGNVTANKMYQL-GIYKGKDLKEKPLEYLVTHFGKMGGHYYDIVRGIHRSEVKPHR 240
Query: 342 FRKSISSERTFSVTEDKAL-LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
KS+ E T+ D + ++L +A+ L ++K+ ++G++LTLK+K F + TR
Sbjct: 241 IAKSVGVEHTYVDDIDTEQDIDKQLMRLAQELYRRIEKKKVKGKSLTLKIKYKDFSLFTR 300
Query: 401 AVTLQKYISSSEDILKHASVL 421
+ T Y + E++ + A L
Sbjct: 301 SKTQNLYFETEEEMYQTARFL 321
>gi|340377599|ref|XP_003387317.1| PREDICTED: DNA polymerase kappa-like, partial [Amphimedon
queenslandica]
Length = 723
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 138/215 (64%), Gaps = 9/215 (4%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DK K+ +++ + SKGSKY+ENE +KE +++KI+ M +L+ I
Sbjct: 15 KAGMEGLDKTKIDQIIIQASKGSKYYENELQKERKVKEKIDTMLKELKQLSPSAIETSVA 74
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
+D I +E RDL+ +HVDMDAFYAAVE +PSL PMAVG SM+ T+NY AR
Sbjct: 75 ASDNDIATIELRRDLNHIIVHVDMDAFYAAVEMRDDPSLLNVPMAVGGQSMLSTSNYLAR 134
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
R+GVRAAMPGFIA+KLCP+L+ V + F+KY S R++ YDP F + LDEAYLDI
Sbjct: 135 RYGVRAAMPGFIAKKLCPQLVIVKSHFSKYQEVSQTVREILSNYDPLFSSVGLDEAYLDI 194
Query: 209 TEVCRE--RGISGIEIAEELRTSVYEEAGLTCSAG 241
TE E RG +E + V EE +T S G
Sbjct: 195 TEYVTELMRG-------KEEQVPVEEENRVTQSFG 222
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 151/233 (64%), Gaps = 6/233 (2%)
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
++ E+R ++ LT SAG+A N++LAK+ SD+NKPNGQ+++P R ++ FI LPI
Sbjct: 311 KVVSEIRERIHLTTQLTASAGIASNKMLAKIASDMNKPNGQYMIPPSREKILEFIRKLPI 370
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
RK+ GIGKVTE +L + GI T ++ K LL +FS + D+F+++ LG+GS
Sbjct: 371 RKVSGIGKVTEKML-NALGIVTGADIYDKRGLLRLMFSKCSYDYFMNICLGIGSCTVHSE 429
Query: 341 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
RKSIS+ERTF + L++K ++ L+ ++++ ++G+T+TLKLKT++FEV+ R
Sbjct: 430 WERKSISTERTFPDIWKPSELFQKCHKLCYSLTEEVEESNIKGKTVTLKLKTSAFEVKQR 489
Query: 401 AVTLQKYISSSEDILKHASVLLKAELP----VSLRLIGLRVTQFNEDKVRAPS 449
++T ISS DI K A +LL+ E+ + LRL+G+R++ E ++PS
Sbjct: 490 SMTFPNPISSFADIHKAARILLETEMKNNSQLKLRLMGVRLSSL-EGTSKSPS 541
>gi|163790782|ref|ZP_02185208.1| DNA-damage-inducible protein P [Carnobacterium sp. AT7]
gi|159873962|gb|EDP68040.1| DNA-damage-inducible protein P [Carnobacterium sp. AT7]
Length = 377
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 127/356 (35%), Positives = 198/356 (55%), Gaps = 18/356 (5%)
Query: 98 EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEARRF 150
E RD +R +H+DMDAF+A+VE NP LKGKP+ + G ++ TANYEAR+F
Sbjct: 10 EPKRDTTRKIIHIDMDAFFASVEERENPDLKGKPVIIARHPKETGGKGVVATANYEARKF 69
Query: 151 GVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE 210
GV +AM A +LCP F+ + Y S R +F +Y SLDEAYLD+TE
Sbjct: 70 GVHSAMSAQKAFELCPHGNFISGHYELYREISKQVRAIFERYTDIIEPLSLDEAYLDVTE 129
Query: 211 VCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMA 270
++ S I IA+ ++ +++E LT SAGV+ N+ +AK+ SD +KP G V+P D+
Sbjct: 130 -NKKNLTSAIYIAKLIQRDIWQEVRLTSSAGVSYNKFIAKLASDYHKPAGITVIPPDK-- 186
Query: 271 VMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVG 329
+ F+ LPI K G+GK T + ++ GI T E++ QK + L F + V
Sbjct: 187 ALEFLRELPIEKFYGVGKKTVEKMHEL-GIYTGEDLYQKDEMELIQRFGRMGYSLYRKV- 244
Query: 330 LGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 387
G+ + +R RKS+ E T+ ++T ++ +L +L IA + +QK G+T+
Sbjct: 245 RGIDNAPVQVSRERKSVGRELTYGKNLTTEQEVL-SELRFIANKVQLSLQKNQKHGKTVV 303
Query: 388 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 441
LK++ ++FE T+ +TL Y+ E+I HA + +S +RL+G+ VT +
Sbjct: 304 LKVRYSNFETATKRITLPNYVKDGEEIFFHAQNIWDEIGVISRGIRLLGITVTNLD 359
>gi|406697434|gb|EKD00693.1| hypothetical protein A1Q2_04885 [Trichosporon asahii var. asahii
CBS 8904]
Length = 618
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 141/419 (33%), Positives = 216/419 (51%), Gaps = 78/419 (18%)
Query: 39 KVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQKV---ADKRIL 95
++ +++ E SKGSK++EN+ RK+ + +KI A+ +L + +K+ AD+ ++
Sbjct: 116 EINRIIAEASKGSKFYENQVRKDKELTEKIAWFCAKRDELLRE--TPREKILADADRILM 173
Query: 96 ELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAA 155
E+EA RDLS++ +HVD+DAFYAAVE +PSLKGK VG ++ TA+
Sbjct: 174 EVEADRDLSQTIVHVDVDAFYAAVECKRDPSLKGKAFGVG-QGVLTTASLTGS------- 225
Query: 156 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCK------------YDPNFMAASLDE 203
P F YT S R+V K YD N M A LDE
Sbjct: 226 ---------------TPLHFDLYTEASRKIREVLLKVSYTILHRADIQYDANLMMAGLDE 270
Query: 204 AYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFV 263
IT ++ ++ +E E+LR V GLT SAG+APNR+LA KPNG F
Sbjct: 271 G---ITGYIQQHDVTALEAVEKLRAEVEAATGLTISAGIAPNRMLA-------KPNGVFE 320
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 323
L +R ++ F+ LP+RKI G G+VTE L + FG+ L +H
Sbjct: 321 LEFNRATIVKFMHDLPVRKIPGFGRVTERCL-EGFGVE-----------LTGSKAH---- 364
Query: 324 FFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRG 383
+G+ S + RKS+ ERTF + + +LA IAE L D+++ G
Sbjct: 365 ----LGIADNSVQPYKREERKSVGVERTFRDKWEDEDILAELANIAEELEDDLKRLQYSG 420
Query: 384 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNE 442
+T+T+K K ++E ++RA +++KYI++ +DIL ELPV +RL+G+R++ +
Sbjct: 421 KTVTVKYKLHTYESKSRAQSVKKYINTKDDIL--------PELPVRIRLLGIRLSNLKD 471
>gi|302875636|ref|YP_003844269.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
gi|307688072|ref|ZP_07630518.1| DNA polymerase IV [Clostridium cellulovorans 743B]
gi|302578493|gb|ADL52505.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B]
Length = 353
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 125/355 (35%), Positives = 199/355 (56%), Gaps = 22/355 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE L + SLKGKP+ VG +S ++ T +YEAR++GV++AMP +IA
Sbjct: 4 RIIMHVDMDAFFASVEVLDDKSLKGKPIIVGGISDRGVVSTCSYEARKYGVKSAMPVYIA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+K CP IF+P + +Y S K+FC P S+DEAYLD++ + + IE
Sbjct: 64 KKKCPHGIFLPVRYWRYKEISKEIFKIFCSLTPYVEPLSIDEAYLDLSYINED----PIE 119
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
A+ ++ V +E GL S G++ N+ LAK+ SD NKPNG V+ + + + F L I
Sbjct: 120 CAKYIKQKVQKEIGLNLSIGISYNKFLAKLASDWNKPNGLKVITEEMIPELLF--PLEIS 177
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
++ GIG + L D+ G+ E++ LL + + + + G +
Sbjct: 178 RVYGIGNKSVKRLNDI-GVFNIEQLYNLPKELLRELMGKMGIEVYERIR-GYDNREVVVE 235
Query: 341 RFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKSI E T + + E K L+Y E A+ +S ++ + + + +T+K+KTA F
Sbjct: 236 RERKSIGRETTLAKDVEQIEELKELIY----EFAKSISKTLKAKNISAKNVTIKIKTADF 291
Query: 396 EVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVRAPS 449
+ T++ TL YI EDI K A ++L ++ +RL+G+ ++ F EDK+ S
Sbjct: 292 KSHTKSKTLNHYIVGEEDIFKEAYNILENLDIKDKIRLVGVSMSSFKEDKLEQIS 346
>gi|342904369|ref|ZP_08726170.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
gi|341953609|gb|EGT80113.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
Length = 355
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 132/351 (37%), Positives = 191/351 (54%), Gaps = 24/351 (6%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFIARK 163
+H+DMD FYA++E NP+L+GKP+AVG S ++ T NYEAR+FG+ +AMP A K
Sbjct: 8 IHIDMDCFYASIEIRENPNLQGKPVAVGGSSRQRGVLTTCNYEARKFGLHSAMPTAQAIK 67
Query: 164 LCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIA 223
CP LI VP + Y S ++F +Y SLDEAYLD+T C++ S IA
Sbjct: 68 KCPNLILVPVNMALYKQVSVQIHQIFQRYTDIIEPLSLDEAYLDVTH-CQKCSGSATWIA 126
Query: 224 EELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPIRK 282
+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ PN+ V FI +LP+ K
Sbjct: 127 QEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNE---VSEFIKTLPLNK 183
Query: 283 IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARF 342
I G+GKVT L D+ G+ TC ++ ++ G+ R
Sbjct: 184 IPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRIWDFSHGIDDREVQAHRE 242
Query: 343 RKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
RKS+ E+T ++ + AL LY++L E +S ++ R + +KLK
Sbjct: 243 RKSVGVEQTLIENIHTIEQASALLNNLYQELIRRLERVSCNIPLSAF--RKIGIKLKFED 300
Query: 395 FEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 444
F+V T T L + S + +L + K S+RLIGL V E+K
Sbjct: 301 FQVTTLEKTGLSLSLESFQQLLPQIFMRSKGR---SIRLIGLHVNLPEENK 348
>gi|223932767|ref|ZP_03624765.1| DNA-directed DNA polymerase [Streptococcus suis 89/1591]
gi|302023273|ref|ZP_07248484.1| DNA polymerase IV [Streptococcus suis 05HAS68]
gi|330832046|ref|YP_004400871.1| DNA polymerase IV [Streptococcus suis ST3]
gi|386583321|ref|YP_006079724.1| DNA polymerase IV [Streptococcus suis D9]
gi|223898600|gb|EEF64963.1| DNA-directed DNA polymerase [Streptococcus suis 89/1591]
gi|329306269|gb|AEB80685.1| DNA polymerase IV [Streptococcus suis ST3]
gi|353735467|gb|AER16476.1| DNA polymerase IV [Streptococcus suis D9]
Length = 355
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 128/364 (35%), Positives = 202/364 (55%), Gaps = 42/364 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
DLSR +HVDMDAF+AA+E NP+LKGKP+ +G ++ T NYEAR FG+ +
Sbjct: 9 DLSRKIIHVDMDAFFAAIEVRDNPALKGKPVIIGADPRLSGGRGVVSTCNYEARAFGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY R++F +Y S+DEAYLD+TE +
Sbjct: 69 AMSSKEAYECCPQAIFISGNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP G +LP D + ++
Sbjct: 127 LGISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPYGLTLILPEDAVGIL 186
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
+SLP+ K G+GK T L ++ G+ T +++L ++ D F G L
Sbjct: 187 ---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL-------IDRFGRFGFDL 235
Query: 333 -----GSTNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEMLSADMQKE 379
G +N+P R RKSI ERT+ + LLYR +L + + ++A +++
Sbjct: 236 YRKARGISNSPVKVDRVRKSIGKERTY-----RKLLYREEDVLKELISLCQRVAASLKRN 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G +GRT+ LK++ F T+ +L+ Y +E I K L++ ++ +RL+G+ V
Sbjct: 291 GKKGRTIVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEEIGKIEKGIRLLGVTV 350
Query: 438 TQFN 441
T F
Sbjct: 351 TNFQ 354
>gi|422002069|ref|ZP_16349308.1| DNA polymerase IV [Leptospira santarosai serovar Shermani str. LT
821]
gi|417259281|gb|EKT88659.1| DNA polymerase IV [Leptospira santarosai serovar Shermani str. LT
821]
Length = 360
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 126/351 (35%), Positives = 194/351 (55%), Gaps = 20/351 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGF 159
SR +HVDMDAFYA+VE P KGKP+ VG S++ A+YEAR+FGVR+AMP
Sbjct: 3 SRKIIHVDMDAFYASVEQRDFPEYKGKPLIVGGPPNGRSVVAAASYEARKFGVRSAMPCS 62
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
A +L P IFV F Y SD R++F +Y SLDE YLD+T ++
Sbjct: 63 KAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT-FNKKNMPFA 121
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 278
++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VLP+D V FI L
Sbjct: 122 VKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLPDD---VTAFIDPL 178
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
P+ G+GKVT ++ + GI+T +++ K T ++ + G
Sbjct: 179 PVGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQHFGKTGIYYYKISRGEDEREVE 237
Query: 339 QARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ SE TF + D+ L+R+L EIA ++K G+TLTLK+K F +
Sbjct: 238 PFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAGKTLTLKIKFQDFSL 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQ 439
+TR+ TL + I +++++ A+ L + + ++RL+G+ ++
Sbjct: 298 KTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTSTKAIRLLGINLSH 348
>gi|91978101|ref|YP_570760.1| DNA polymerase IV [Rhodopseudomonas palustris BisB5]
gi|91684557|gb|ABE40859.1| DNA-directed DNA polymerase [Rhodopseudomonas palustris BisB5]
Length = 396
Score = 199 bits (506), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 128/349 (36%), Positives = 195/349 (55%), Gaps = 18/349 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L G+P+AVG ++ A+YEAR+FGVR+AMP A
Sbjct: 44 RKIIHVDMDAFYASVEQRDNPELWGRPVAVGGSRERGVVAAASYEARKFGVRSAMPSVTA 103
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
R+ CP L+FV F Y S R++F ++ SLDEAYL +TE +GIS
Sbjct: 104 RRQCPGLVFVKPRFEVYKAISQQIREIFAEHTLVIEPLSLDEAYLYVTENL--QGISLAR 161
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA +R + E GL SAG++ N+ LAK+ SD KPNGQ+V+ + F+ +LP+
Sbjct: 162 DIALAIRARIKTETGLNASAGISYNKFLAKLASDHRKPNGQYVISPETGP--AFVEALPV 219
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGLGSTNTP 338
K GIG T GI T ++ +G L + +H ++ + G+
Sbjct: 220 GKFHGIGPATAARFH-ALGIQTGLDI--RGRTLTFLEAHFGKAGAYYYWISRGIDERPVR 276
Query: 339 QARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ +E TFS +TE A+ +L + + + + G RGRT+TLK+K A FE
Sbjct: 277 ANRIRKSVGAENTFSQDLTEFDAMAA-ELQPLIDKVWRHCETTGNRGRTVTLKVKFADFE 335
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNED 443
+ +R+ ++ + ED+ + A LL+A +P+ ++RL+G+ ++ D
Sbjct: 336 IMSRSRSVPTAVGGREDLERLAVGLLQAAMPLPKAVRLLGVSLSSLRSD 384
>gi|373467387|ref|ZP_09558686.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
gi|371758922|gb|EHO47678.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
Length = 355
Score = 199 bits (506), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 131/351 (37%), Positives = 192/351 (54%), Gaps = 24/351 (6%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFIARK 163
+H+DMD FYA++E NP+L+GKP+AVG S ++ T NYEAR+FG+ +AMP A K
Sbjct: 8 IHIDMDCFYASIEIRENPNLQGKPVAVGGSSRQRGVLTTCNYEARKFGLHSAMPTAQAIK 67
Query: 164 LCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIA 223
CP LI VP + T Y S ++F +Y SLDEAYLD+T C++ S IA
Sbjct: 68 KCPNLILVPVNMTLYKQVSAQIHQIFQRYTDIIEPLSLDEAYLDVTH-CQKCSGSATWIA 126
Query: 224 EELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPIRK 282
+E+R ++++E LT SAG+AP + LAK+ SD+NKPNGQFV+ PN+ V FI +LP+ K
Sbjct: 127 QEIRQAIFDELKLTASAGIAPLKFLAKIASDMNKPNGQFVIKPNE---VSEFIKTLPLNK 183
Query: 283 IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARF 342
I G+GKVT L D+ G+ TC ++ ++ G+ R
Sbjct: 184 IPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRIWDFSHGIDDREVQAHRE 242
Query: 343 RKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
RKS+ E+T ++ + AL LY +L E +++++ R + +KLK
Sbjct: 243 RKSVGVEQTLIENIHTIEQASALLNNLYDELIRRLERINSNIPLSAF--RKIGVKLKFED 300
Query: 395 FEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 444
F+V T T L + S + +L + K S+RLIGL V E+K
Sbjct: 301 FQVTTLEKTGLPLSLESFQQLLPQIFMRAKGR---SIRLIGLHVNLPEENK 348
>gi|418753975|ref|ZP_13310210.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. MOR084]
gi|409965705|gb|EKO33567.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. MOR084]
Length = 360
Score = 199 bits (506), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 195/352 (55%), Gaps = 22/352 (6%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGF 159
SR +HVDMDAFYA+VE P KGKP+ VG S++ A+YEAR+FGVR+AMP
Sbjct: 3 SRKIIHVDMDAFYASVEQRDFPEYKGKPLIVGGPPNGRSVVAAASYEARKFGVRSAMPCS 62
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS- 218
A +L P IFV F Y SD R++F +Y SLDE YLD+T ++ I
Sbjct: 63 KAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT--FNKKNIPF 120
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISS 277
++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VLP+D V FI
Sbjct: 121 AVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLPDD---VTAFIDP 177
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ G+GKVT ++ + GI+T +++ K T ++ + G
Sbjct: 178 LPVGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQHFGKTGIYYYKISRGEDEREV 236
Query: 338 PQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ SE TF + D+ L+R+L EIA ++K G+TLTLK+K F
Sbjct: 237 EPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAGKTLTLKIKFQDFS 296
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQ 439
++TR+ TL + I +++++ A+ L + + ++RL+G+ ++
Sbjct: 297 LKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTSTKAIRLLGINLSH 348
>gi|323138008|ref|ZP_08073082.1| DNA-directed DNA polymerase [Methylocystis sp. ATCC 49242]
gi|322396727|gb|EFX99254.1| DNA-directed DNA polymerase [Methylocystis sp. ATCC 49242]
Length = 382
Score = 199 bits (506), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 124/345 (35%), Positives = 193/345 (55%), Gaps = 14/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE NP L+GK +AVG S ++ A+YEAR+FGV +AMP A
Sbjct: 30 RKIIHVDMDAFFASVEQRDNPDLRGKAVAVGGSSERGVVAAASYEARKFGVHSAMPSVTA 89
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
R+ CP+LIFV F Y S R++F +Y SLDEAYLD+T +GI +
Sbjct: 90 RRKCPDLIFVKPRFDVYKAVSTQIREIFAEYTAIIEPLSLDEAYLDVT--TNLKGIETAT 147
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
EIA+E+R ++ + GLT SAGV+ N+ LAK+ SD KP+G FV+ RM F+ + +
Sbjct: 148 EIAQEIRAAIRSKIGLTASAGVSYNKFLAKLASDHRKPDGMFVI-TPRMGP-AFVEGMAV 205
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K G+G T+ + + GI+T ++ Q L F + F+ + G+
Sbjct: 206 EKFHGVGPATKAKM-NRLGIHTGRDLRSQALPFLIENFGKAGGHFYW-ISRGVDHRPVRA 263
Query: 340 ARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKS+ +E+TF++ D A + L + + + + G+RGRT+TLK+K + F++
Sbjct: 264 DRIRKSVGAEQTFALDMTDLAAMREALEPVIDKVWRHCETTGVRGRTVTLKVKFSDFDLI 323
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
TR+ TL I + ++ ++ L P +RL+G+ ++
Sbjct: 324 TRSRTLPHAIDTRAELARNVFETLTGAFPFRKPVRLLGVSISSLG 368
>gi|392329945|ref|ZP_10274561.1| DNA polymerase IV [Streptococcus canis FSL Z3-227]
gi|391419817|gb|EIQ82628.1| DNA polymerase IV [Streptococcus canis FSL Z3-227]
Length = 364
Score = 199 bits (506), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 135/367 (36%), Positives = 208/367 (56%), Gaps = 41/367 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP L+GKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPILRGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY R++F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYDKYRSVGHQIRRIFRRYTDLVEPMSIDEAYLDVTDNKLD 128
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 273
S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP G VLP D ++
Sbjct: 129 IK-SAVKIAKLIQHDIWQEVGLTCSAGVSYNKFLAKLASDFEKPRGLTLVLPQD---ALS 184
Query: 274 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL- 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 185 FLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDLY 236
Query: 333 ----GSTNTPQA--RFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEG 380
G +++P R RKSI SERT++ LLY++ AEI A+ ++A +Q+
Sbjct: 237 RKARGISHSPVKPDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQEHK 291
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVT 438
G+T+ LK++ A F T+ VTL + + I + A+ + + E PV +RL+G+ +T
Sbjct: 292 KLGKTVVLKVRYADFTTLTKRVTLTELTREAAQIEQVAADIFDSLIENPVGIRLLGVTMT 351
Query: 439 QFNEDKV 445
EDKV
Sbjct: 352 NL-EDKV 357
>gi|220915280|ref|YP_002490584.1| DNA-directed DNA polymerase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953134|gb|ACL63518.1| DNA-directed DNA polymerase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 418
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 199/352 (56%), Gaps = 16/352 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R+ LH+D+DAFYA+VE L +P L+G+P+ VG ++C A+YEAR+FGVR+A+P A
Sbjct: 10 RTILHLDLDAFYASVEQLDHPELRGRPVIVGGTGNRGVVCAASYEARKFGVRSALPTARA 69
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVF---CKYDPNFMAASLDEAYLDITEVCRERGIS 218
R+LCP+ +F+P F + YS+L+R+VF +Y P SLDEA+LD++ R +
Sbjct: 70 RRLCPDGVFLPPRFGR---YSELSRRVFDVYRRYTPLVEPLSLDEAFLDVS-ASRALHGT 125
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
G EIA ++ +V E GL SAGVA ++ AK+ +D+ KP+G V+P V F++ L
Sbjct: 126 GPEIARAIKVAVRGECGLAVSAGVAEVKMAAKIATDLGKPDGLVVVPAG--GVAAFLAPL 183
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNT 337
P+ ++ G+G+VTE LR + G+ T ++ + S L A + A ++ G +
Sbjct: 184 PVGRLWGVGEVTEATLRRI-GVATIGDLARMPESALAAALGPNHARGLRALARGEDAREV 242
Query: 338 PQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
KS+ +E TF + L R+L A + ++ GL G +TLK+K A F
Sbjct: 243 VPDEEAKSVGAEDTFDHDLLGRTALERELLAQAGTVGRRLRAAGLAGHVVTLKVKYADFT 302
Query: 397 VRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDKVRA 447
+ TR VTL++ I + A L + +L +RL G+ V+ F D+ R
Sbjct: 303 LVTRRVTLERATDDDRAIFEAARAQLERVDLRRPVRLTGISVSGFAGDEERG 354
>gi|187735823|ref|YP_001877935.1| DNA-directed DNA polymerase [Akkermansia muciniphila ATCC BAA-835]
gi|254781918|sp|B2UKN1.1|DPO4_AKKM8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|187425875|gb|ACD05154.1| DNA-directed DNA polymerase [Akkermansia muciniphila ATCC BAA-835]
Length = 359
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 131/349 (37%), Positives = 188/349 (53%), Gaps = 16/349 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM---ICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA++E +P +GKP+AVG M + A+YEARRFGVR+AMP A
Sbjct: 4 RKIIHVDMDAFYASIEQRDHPEYRGKPIAVGRPEMRGVVAAASYEARRFGVRSAMPSMKA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
KLCP LIF Y S +F +Y SLDEA+LD+TE + GI +
Sbjct: 64 LKLCPHLIFTRNRMDVYKAVSAQIHAIFHRYTDLVEPLSLDEAFLDVTE--NKPGIPLAV 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA ++ + E LT SAGV+ N+ LAK+ SD KP+G F + R FI++LPI
Sbjct: 122 DIARRIKKEIRRELHLTASAGVSYNKFLAKIASDYRKPDGLFTIHPSRAE--KFIAALPI 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
G+G T +R + N + + L F + A F+ + G+ +
Sbjct: 180 EAFWGVGHATAERMRALSITNGAQLRARDKDFLVRHFGKTGAIFY-NFARGVDDRPVEPS 238
Query: 341 RFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKS+ E T+ +VT +AL R L +AE L+ + + G RG TLTLK+K F +
Sbjct: 239 RMRKSVGCEETYRENVTRAEALEQR-LPLLAEELAGRLARSGFRGNTLTLKVKFPDFVQK 297
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQFNEDK 444
TR T+ + ++ E IL A L++ EL + RL+GL V+ E++
Sbjct: 298 TRCATVPEILTEKEGILPLARTLME-ELDSGDRTFRLLGLSVSHPQEEQ 345
>gi|419802488|ref|ZP_14327674.1| DNA polymerase IV [Haemophilus parainfluenzae HK262]
gi|419845026|ref|ZP_14368313.1| DNA polymerase IV [Haemophilus parainfluenzae HK2019]
gi|385190048|gb|EIF37498.1| DNA polymerase IV [Haemophilus parainfluenzae HK262]
gi|386416952|gb|EIJ31444.1| DNA polymerase IV [Haemophilus parainfluenzae HK2019]
Length = 374
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 136/350 (38%), Positives = 197/350 (56%), Gaps = 26/350 (7%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGF 159
+R +H+DMD FYA++E NP+L+GKP+AVG S ++ T NYEAR+FG+ +AMP
Sbjct: 23 TRKIIHIDMDCFYASIEIRENPTLQGKPVAVGGSSRQRGVLTTCNYEARKFGLHSAMPTA 82
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
A K CP LI VP + Y S ++F +Y SLDEAYLD+T+ C + S
Sbjct: 83 QAIKKCPNLILVPVNMPLYKQVSAQIHQIFQRYTSIIEPLSLDEAYLDVTD-CTQCSGSA 141
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSL 278
IA+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ P++ V F+ +L
Sbjct: 142 TWIAQEIRQAIFDELKLTASAGVAPLKFLAKIASDMNKPNGQFVIQPHE---VEQFVKTL 198
Query: 279 PIRKIGGIGKVT-EHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGST 335
P++KI G+GKVT E +L+ G+ TCE+ +QK S+L +F + G+
Sbjct: 199 PLKKIPGVGKVTSERLLK--MGLETCED-VQKLDQSILLNIFGKMGKRIW-DFSHGIDDR 254
Query: 336 NTPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQKEGLR-GRTLTLK 389
R RKSI ERT S + + ALL AE+ + L R + +K
Sbjct: 255 EIQAYRERKSIGVERTLSENIRHLEQGIALLDNLYAELIRRIERSAPNVPLTVFRKIGVK 314
Query: 390 LKTASFEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVT 438
LK F+V T T L + S + +L+ + + S+RL+GL VT
Sbjct: 315 LKFEDFQVTTLEKTGLPLSLKSFQQLLEQ---IWQRSQGKSIRLVGLHVT 361
>gi|427827542|ref|ZP_18994574.1| impB/mucB/samB family protein [Neisseria meningitidis H44/76]
gi|316984579|gb|EFV63544.1| impB/mucB/samB family protein [Neisseria meningitidis H44/76]
Length = 342
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 188/336 (55%), Gaps = 18/336 (5%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM A++LCP+
Sbjct: 1 MDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVATAKRLCPQA 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
++VP F Y S VF +Y SLDEAYLD+T + +G ++A+E+R
Sbjct: 61 VYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG-DVAKEIRA 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
+++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+ KI G+GK
Sbjct: 120 AIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPLGKIPGVGK 177
Query: 289 VTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSI 346
VT ++ + G+ T ++ ++G LL +H + L G+ P R+ +
Sbjct: 178 VTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERPVKAERERL 232
Query: 347 SSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL 404
++ ED L L +AE L + ++ + +++TLKLKT F + TR +T
Sbjct: 233 QISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRIITRTLTY 292
Query: 405 QKYISSSEDILKHASVLLKAELPV---SLRLIGLRV 437
+ +L+ A +L+ P + RLIG+ V
Sbjct: 293 SSVLPDCAALLQAAQMLMARVSPQTEDAFRLIGIGV 328
>gi|357060135|ref|ZP_09120909.1| DNA polymerase IV [Alloprevotella rava F0323]
gi|355377025|gb|EHG24265.1| DNA polymerase IV [Alloprevotella rava F0323]
Length = 371
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 132/352 (37%), Positives = 196/352 (55%), Gaps = 15/352 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMD F+AAVE NP L+GKP+AVG S++ TA+YEAR+FGV +A +A
Sbjct: 5 RKIIHVDMDCFFAAVEQRDNPELRGKPVAVGNDEERSVVTTASYEARKFGVHSAQSVQVA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
++LCP LI VP F KY + ++F Y S+DEA+LD+TE ++G+ +
Sbjct: 65 KRLCPSLIIVPCHFEKYRAVNRQISEIFHDYTDQVEFLSVDEAFLDVTE--NKKGVELAV 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA E++ + EE LT SAGV+ +LLAK+ SD KP+G + D+ + FI+ LP+
Sbjct: 123 DIAREIKNRIQEELQLTASAGVSYCKLLAKIASDYRKPDGLCTIHPDK--ALRFIAHLPV 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP 338
K+ G+G T L + GI T E+ L++ SL L F F + G+
Sbjct: 181 TKLWGVGPKTAERLHQM-GIYTGEQ-LREYSLHSLTQAFG-KMGQVFYNFARGIDERPVV 237
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R KS+ E TF + +A + +L + L ++K GRTLTLK+K A F
Sbjct: 238 TTREAKSVGCEHTFEKDLQTQAPVIVELYHVTLKLVERIKKHKFEGRTLTLKVKYADFTQ 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDKVRAP 448
TR++T Q+ + + + IL A LL K + +RL+GL V+ E+ V+ P
Sbjct: 298 ITRSLTQQELLRTKKQILPLAKQLLAKTDTSRPIRLLGLSVSSPKEENVKKP 349
>gi|217979283|ref|YP_002363430.1| DNA-directed DNA polymerase [Methylocella silvestris BL2]
gi|217504659|gb|ACK52068.1| DNA-directed DNA polymerase [Methylocella silvestris BL2]
Length = 359
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 188/344 (54%), Gaps = 12/344 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE NP L+GKP+AVG S ++ A+YEAR FGVR+AMP A
Sbjct: 7 RKIIHIDMDAFFASVEQRDNPELRGKPVAVGGSSQRGVVAAASYEARAFGVRSAMPSVTA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
R+ CPELIFV F Y SD R +F +Y P SLDEAYLD++E +S E
Sbjct: 67 RRKCPELIFVKPRFDVYRAVSDEMRAIFAEYTPIIEPLSLDEAYLDVSETL-NGALSATE 125
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+++R + E LT SAGV+ N+ LAK+ SD KP+G FV+ +M F+ LP+R
Sbjct: 126 IAQQIRAKIRERTNLTASAGVSYNKFLAKLASDHRKPDGLFVI-TPKMGP-AFVEPLPVR 183
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
K G+G T ++ + GI T ++ Q + + F + ++ V G+
Sbjct: 184 KFHGVGPATAAKMKRL-GIETGFDLKAQSLAFMQQQFGKA-GPYYYGVARGVDERPVRAH 241
Query: 341 RFRKSISSERTFSVTEDKALLYRKLAE-IAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TF R+ E I + + + G GRTLTLK+K A F+ T
Sbjct: 242 RIRKSVGAENTFFADLFTFEAAREAMEPIVDKVWRHCETAGAHGRTLTLKVKYADFQQIT 301
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
R+ T ++ ++ + + LL P +RL+G+ ++ +
Sbjct: 302 RSRTGMTPFATRAELERQSLDLLAPLFPCDKGVRLLGVSLSSLD 345
>gi|344199852|ref|YP_004784178.1| DNA polymerase IV [Acidithiobacillus ferrivorans SS3]
gi|343775296|gb|AEM47852.1| DNA polymerase IV [Acidithiobacillus ferrivorans SS3]
Length = 399
Score = 199 bits (505), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 130/346 (37%), Positives = 189/346 (54%), Gaps = 17/346 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +HVDMDAF+AAVE +P L+G+P+ VG ++ T +YEARRFG+ +AM
Sbjct: 34 RKIIHVDMDAFFAAVEQRDHPELRGQPVIVGGDPGGRGVVATCSYEARRFGIHSAMTAAR 93
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
AR LCP+ IF+ Y S L + Y P SLDEA+LD T + GI +
Sbjct: 94 ARSLCPQAIFLRPRMEAYREASRLVMGILRCYTPLVEPLSLDEAFLDATAATAD-GILAV 152
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA E+R + E GLT SAGV+ N+LLAK+ SD KPNG FV+P +R +TF++ LP+
Sbjct: 153 QIAREIRARIERETGLTASAGVSYNKLLAKLASDWRKPNGLFVVPPERG--LTFLAPLPV 210
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K+ G+G T L + GI+T ++ L A F T +F + G+
Sbjct: 211 SKLHGVGPATVKKLSSM-GIHTVLDLRNMSREALIAQFG-KTGLWFYEIARGIDLRPVQP 268
Query: 340 ARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+R RKS+ +ERTF D ++ L ++A ++A +Q GL GRT+++K + F
Sbjct: 269 SRQRKSVGTERTFPKNLADPKVMLATLQQMAGQVAARLQVLGLAGRTVSIKARFPDFATV 328
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELP------VSLRLIGLRVT 438
TRA T + I +E I LL +P S+RL+G+ V+
Sbjct: 329 TRAHTDAQAIWRTEAISALLPGLLAKAIPTRLPVHASVRLLGVTVS 374
>gi|385833731|ref|YP_005871506.1| DNA-damage-inducible protein P [Lactococcus garvieae Lg2]
gi|343182884|dbj|BAK61222.1| DNA-damage-inducible protein P [Lactococcus garvieae Lg2]
Length = 365
Score = 199 bits (505), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 128/371 (34%), Positives = 205/371 (55%), Gaps = 29/371 (7%)
Query: 94 ILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYE 146
+L D+SR +H+DMDAF+A+VE NP LKGKP+ + G ++ T +YE
Sbjct: 1 MLTFPLVNDISRKIIHIDMDAFFASVEIRDNPELKGKPVVIARNPLETGGRGVVSTCSYE 60
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
AR FG+ +AM A +LCP+ +F+ ++ KY S+ R++F +Y AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYELCPQAVFISGNYEKYRAISEQVREIFNRYTDEVEAASIDEAYL 120
Query: 207 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 265
D+T + S I++A+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP G +LP
Sbjct: 121 DVTR-NKIGSTSAIKVAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPYGLTVILP 179
Query: 266 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADF 324
A F++ LP+ K G+GK T L ++ GI T E+ LL A F +
Sbjct: 180 E---AAKDFLAELPVEKFHGVGKATGAKLHEL-GIFTGAEIQAADPLLLAERFGVYGWNL 235
Query: 325 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQK 378
FL G+ +R RKS+ ERT+S LLY ++L ++E +S ++++
Sbjct: 236 FLKAN-GIHHAPVVTSRQRKSVGKERTYS-----KLLYNSEDIKKELTNLSERVSTNLKR 289
Query: 379 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGL 435
L G T+ LKL+ + F+ T+ L + I+ + + A LL+ + + +RL+G+
Sbjct: 290 HQLLGDTVVLKLRYSDFKTITKRKKLSEKINEATTLAHVAQDLLEEVDYDETLGVRLLGV 349
Query: 436 RVTQFNEDKVR 446
+T F +++R
Sbjct: 350 TLTGFGAEELR 360
>gi|347522347|ref|YP_004779918.1| DNA-damage-inducible protein P [Lactococcus garvieae ATCC 49156]
gi|343180915|dbj|BAK59254.1| DNA-damage-inducible protein P [Lactococcus garvieae ATCC 49156]
Length = 365
Score = 199 bits (505), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 128/371 (34%), Positives = 205/371 (55%), Gaps = 29/371 (7%)
Query: 94 ILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYE 146
+L D+SR +H+DMDAF+A+VE NP LKGKP+ + G ++ T +YE
Sbjct: 1 MLTFPLVNDISRKIIHIDMDAFFASVEIRDNPELKGKPVVIARNPLETGGRGVVSTCSYE 60
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
AR FG+ +AM A +LCP+ +F+ ++ KY S+ R++F +Y AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYELCPQAVFISGNYEKYRAISEQVREIFNRYTDEVEAASIDEAYL 120
Query: 207 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 265
D+T + S I++A+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP G +LP
Sbjct: 121 DVTR-NKIGSTSAIKVAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPYGLTVILP 179
Query: 266 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADF 324
A F++ LP+ K G+GK T L ++ GI T E+ LL A F +
Sbjct: 180 E---AAKDFLAELPVEKFHGVGKATGAKLHEL-GIFTGAEIQAADPLLLAERFGVYGWNL 235
Query: 325 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQK 378
FL G+ +R RKS+ ERT+S LLY ++L ++E +S ++++
Sbjct: 236 FLKAN-GIHHAPVVTSRQRKSVGKERTYS-----KLLYNSEDIKKELTNLSERVSTNLKR 289
Query: 379 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGL 435
L G T+ LKL+ + F+ T+ L + I+ + + A LL+ + + +RL+G+
Sbjct: 290 HQLLGDTVVLKLRYSDFKTITKRKKLSEKINEATTLAHVAQDLLEEIDYDETLGVRLLGV 349
Query: 436 RVTQFNEDKVR 446
+T F +++R
Sbjct: 350 TLTGFGAEELR 360
>gi|47226716|emb|CAG07875.1| unnamed protein product [Tetraodon nigroviridis]
Length = 520
Score = 198 bits (504), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 165/259 (63%), Gaps = 19/259 (7%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ LP R AVM F+
Sbjct: 269 GTSVEEAVREMRFRIEQKTMLTASAGIAPNMMLAKVCSDKNKPNGQYRLPPTREAVMEFV 328
Query: 276 SSLPIRK-IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
LP+RK + G+GKV+E +L GI++C + QK +LL +FS ++ FL V LGLGS
Sbjct: 329 CDLPVRKVVSGVGKVSEKLL-SALGISSCSHLGQKMALLSLLFSETSWHHFLQVSLGLGS 387
Query: 335 TNTPQARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 390
P+ RKS+S+ERTF +V E +L + E+ E L+ D++KEGL+G+T+TLKL
Sbjct: 388 AFIPRHEERKSMSTERTFKEMSAVEEQLSLCH----ELCEDLANDLKKEGLKGKTVTLKL 443
Query: 391 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAE------LPVSLRLIGLRVTQFNEDK 444
K +FEV+TRA+TL ++++++I A LLK E P+ LRL+G+RV+ F
Sbjct: 444 KNVNFEVKTRALTLPYPVATADEIFTVAKDLLKTERDNESPQPLRLRLMGVRVSAFVSSD 503
Query: 445 VRAPSDPTQKTLTNFMTSG 463
+ P Q+++ F+ SG
Sbjct: 504 HK---KPLQRSIVGFLNSG 519
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/244 (43%), Positives = 135/244 (55%), Gaps = 65/244 (26%)
Query: 29 KAGMDGVDKEKVQKVVYEMSK-----------------------------------GSKY 53
KAGM+G+D++K+ K++ E SK GSK+
Sbjct: 8 KAGMEGLDRDKINKIIMETSKVSVMSFKPASMSLSEETDSHGAEGILLVIVLVSIQGSKF 67
Query: 54 FENEERKEAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMD 113
+ENE ++E Q++E M A ELE +RDL+R+ +HVDMD
Sbjct: 68 YENELKRE----QQVERMVA----------------------ELEESRDLTRAIVHVDMD 101
Query: 114 AFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPT 173
AFYAAVE P LK KPMAVG+MSM+ T+NY AR++GVRAAMPGFIA+KLCP L+ VPT
Sbjct: 102 AFYAAVEMRDCPELKDKPMAVGSMSMLSTSNYLARKYGVRAAMPGFIAKKLCPHLVIVPT 161
Query: 174 DFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEE 233
+F KY S+ R++F YDP FM SLDEAYLD TE +R E LRT Y
Sbjct: 162 NFDKYRAVSNEIREIFTDYDPGFMPVSLDEAYLDFTEHVEKRQ----SWPESLRTRRYRA 217
Query: 234 AGLT 237
+ T
Sbjct: 218 STTT 221
>gi|85709267|ref|ZP_01040332.1| DNA polymerase IV [Erythrobacter sp. NAP1]
gi|85687977|gb|EAQ27981.1| DNA polymerase IV [Erythrobacter sp. NAP1]
Length = 383
Score = 198 bits (504), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 196/351 (55%), Gaps = 23/351 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMIC---TANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE +P L+GKP+AVG A+YEAR+FGVR+AMP A
Sbjct: 22 RKIIHVDMDAFFASVEQRDDPELRGKPVAVGGSGGRGVVAAASYEARKFGVRSAMPSVTA 81
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
++LCP+LIFV F Y S R++F + P+ SLDEAYLD+TE GI S
Sbjct: 82 KRLCPDLIFVRHRFDAYKEASRQIRRIFEHHTPHVEPLSLDEAYLDVTE--DRLGIGSAT 139
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IAE +R + + LT SAGV+ N+ LAK+ SD NKPNG V+ + A F++ LPI
Sbjct: 140 RIAELIRQEIRAKTKLTASAGVSYNKFLAKLASDQNKPNGLCVIRPGQGA--DFVAGLPI 197
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
R+ G+G E ++ + GI T ++ K L A F S AD+ G+
Sbjct: 198 RRFHGVGPKAEEKMKRL-GIETGADLAAKDIEFLRANFG-SFADYLYRAARGIDLRPVRA 255
Query: 340 ARFRKSISSERTFSVTED---KALLYRKLAEIAEML-----SADMQKEGLRGRTLTLKLK 391
R RKS+ ERTFS ED A L L I E++ +A + RGRT+TLK+K
Sbjct: 256 HRVRKSVGGERTFS--EDISSGAALRDTLENIIEIVWGRIENASKDDKPTRGRTITLKVK 313
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQF 440
F++ +RA ++ +I ++ + + LL+ LP+ + RL+GL ++
Sbjct: 314 FTDFQIMSRAKSVPHWIEDKQEFARLSRELLEEALPLPMPIRLMGLTLSNL 364
>gi|429770091|ref|ZP_19302173.1| putative DNA polymerase IV [Brevundimonas diminuta 470-4]
gi|429185547|gb|EKY26522.1| putative DNA polymerase IV [Brevundimonas diminuta 470-4]
Length = 359
Score = 198 bits (503), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 124/347 (35%), Positives = 195/347 (56%), Gaps = 16/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE +P+L+G+P+AVG + ++ A+YEAR+FGVR+AMP A
Sbjct: 7 RKIIHVDMDAFFASVEQRDDPALRGRPVAVGHAASRGVVAAASYEARKFGVRSAMPSSTA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
+ CP+LIF P F Y S VF Y SLDEAYLD+T RG+ +
Sbjct: 67 LRRCPQLIFTPPRFEIYRAVSAQIHAVFADYTDLIEPLSLDEAYLDVT--ANRRGLPTAS 124
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
AEE+R + E GLT SAG++ N+ LAK+ SD KPNGQFV+P R F+ LP+
Sbjct: 125 ATAEEIRDRILEATGLTASAGISYNKFLAKLASDQRKPNGQFVVPPGRGE--AFVQDLPV 182
Query: 281 RKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
++ G+G VT E + R GI T ++ + + ++ ++ G
Sbjct: 183 KRFHGVGPVTAEKMTR--LGIETGADLRHQSLAFLQHHFGKSGPWYYAIARGEDHRPVNP 240
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS SE TF+ + E +A+ + E+A+ + A +K G GRT+T+K+K A F+
Sbjct: 241 DRERKSSGSETTFARDLVEPEAI-EAGVEEMADEVWAWCEKAGSLGRTVTVKVKWADFQQ 299
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNE 442
TR+ + + ++S + + + +L ++ P + +RL+G+ ++ +
Sbjct: 300 STRSRSFAEPVASKARLREISRLLARSLYPPTKGVRLVGVTISNLEK 346
>gi|303257690|ref|ZP_07343702.1| ATP-NAD kinase [Burkholderiales bacterium 1_1_47]
gi|302859660|gb|EFL82739.1| ATP-NAD kinase [Burkholderiales bacterium 1_1_47]
Length = 366
Score = 198 bits (503), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 130/344 (37%), Positives = 196/344 (56%), Gaps = 14/344 (4%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPG 158
D R LH+D+DAF+A+VE NPSL+GK +AVG S ++ +A+YEAR+FGVR+AMP
Sbjct: 4 DNYRRILHLDLDAFFASVEQRDNPSLQGKAIAVGLNSARGVVASASYEARKFGVRSAMPS 63
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS 218
+A +LCP LIFVP +Y S ++F +Y S+DEA+LD+T+V R+ G +
Sbjct: 64 SVAARLCPNLIFVPGRMDEYKKASAEVFEIFSRYTNLIEQVSIDEAFLDVTDVWRDYGYA 123
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISS 277
+EIA+ ++ V E GL SAGV+ N+ LAK+ SD KP+G V+ PN A + FI
Sbjct: 124 -MEIAKLIKEDVRREVGLIISAGVSYNKFLAKIASDWRKPDGLCVIHPN---AALKFIDR 179
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTN 336
LP++ I G+G VT + + GI T +++ +K S L F S ++ + +
Sbjct: 180 LPVKAIWGVGPVTSQKM-EALGIFTGKDLREKDLSFLVEQFGSSGLSYY-NFARCIDDRP 237
Query: 337 TPQARFRKSISSERTFSVTEDKA-LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RK +S+E T S E L L+E+ + L ++K GR+LTLK++ +F
Sbjct: 238 VRTERIRKQVSAEITLSKDEGNLNKLEDTLSELTDYLMTRLRKNDFLGRSLTLKVRFHNF 297
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLL-KAELP-VSLRLIGLRV 437
+ TR T + ILK A LL K + ++RL+G+ +
Sbjct: 298 KTITRTQTSNSVFNEKSQILKTAESLLEKIDFNHQTVRLLGIAI 341
>gi|116512975|ref|YP_811882.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris SK11]
gi|123025143|sp|Q02WA3.1|DPO4_LACLS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|116108629|gb|ABJ73769.1| Nucleotidyltransferase/DNA polymerase for DNA repair [Lactococcus
lactis subsp. cremoris SK11]
Length = 364
Score = 198 bits (503), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 202/369 (54%), Gaps = 29/369 (7%)
Query: 94 ILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYE 146
+L D SR +H+DMDAF+A+VE NPSLKGKP+ + G ++ T +YE
Sbjct: 1 MLTFPLINDTSRKIIHIDMDAFFASVEVRDNPSLKGKPVVIARNPLQTGGRGVVSTCSYE 60
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
AR FG+ +AM A LCP+ IF+ ++ KYT S R++F +Y N AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDNIEAASIDEAYL 120
Query: 207 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 265
D+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P
Sbjct: 121 DVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMP 179
Query: 266 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADF 324
++ + F++ LP+ K G+GK T L G T ++ + + L F +
Sbjct: 180 DE---ALEFLAKLPVEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAEKFGIYGWEL 235
Query: 325 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQK 378
F G+ ++ R RKS+ ERT+ LLY +L +I++ +S +++
Sbjct: 236 FQKAN-GIHNSKVKNHRERKSVGKERTYG-----KLLYLPDDIKAELIKISKQVSESLKR 289
Query: 379 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGL 435
L+G + LKL+ + F T+ ++ + + S EDI + A + + + + +RL+G+
Sbjct: 290 HQLKGNIIILKLRYSDFTTLTKRKSMVENLDSPEDIAEAAQQIFEEIDYDESLGVRLLGV 349
Query: 436 RVTQFNEDK 444
V+ F K
Sbjct: 350 TVSGFGVQK 358
>gi|223934355|ref|ZP_03626276.1| DNA-directed DNA polymerase [bacterium Ellin514]
gi|223896818|gb|EEF63258.1| DNA-directed DNA polymerase [bacterium Ellin514]
Length = 368
Score = 198 bits (503), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 190/333 (57%), Gaps = 16/333 (4%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFIARK 163
H+DMDAFYA+VE NP L+GKP+ VG ++C A+YEAR+FGVR+AMP +A++
Sbjct: 6 FHLDMDAFYASVEQRDNPELRGKPLIVGAPPTQRGVVCAASYEARKFGVRSAMPSVVAKR 65
Query: 164 LCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERG-----IS 218
LCP+ F+ Y S+ ++ S+DEAYLD++ VC+ +S
Sbjct: 66 LCPDGFFIRPRMDHYRAESNQIMQIVAASGAIIEQVSIDEAYLDLSPVCQRSDLDSSLLS 125
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
+ +A +L+ ++ E GLT S G+A N+LLAK+ SD NKPNG ++P +R V+ F+ +
Sbjct: 126 AVPLAAQLKDKIFSERGLTTSIGIASNKLLAKIASDFNKPNGLTLIP-ERDKVL-FLRPM 183
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
PIR I G+G+VTE +L+ G+ T ++ G L V S S G +T
Sbjct: 184 PIRAIPGVGRVTEEMLKKS-GVETIGDLQDFPGDLRSMVGSFGPTLKRFSFGEDNRQLDT 242
Query: 338 PQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
KSISSE TF TED+ +L L E AE ++A ++++ + +T+ +KL+ + F
Sbjct: 243 --GDVIKSISSENTFLKDTEDRKILKTCLREQAEEIAAKLKRKQIGAQTIQVKLRYSDFT 300
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPVS 429
TR +++++ I+ + DI + LL E VS
Sbjct: 301 TLTRQLSVEEPITEAADIYRLGCYLLAREKLVS 333
>gi|383640097|ref|ZP_09952503.1| DNA-directed DNA polymerase [Sphingomonas elodea ATCC 31461]
Length = 361
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 189/343 (55%), Gaps = 12/343 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA---NYEARRFGVRAAMPGFIA 161
R LH+DMDAFYA+VE +PSL+GKP+AVG+ + +YEAR FGVR+A+P A
Sbjct: 7 RKILHIDMDAFYASVEQRDDPSLRGKPVAVGSAAARGVVAAASYEARAFGVRSALPSVTA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ CP+LIFV F Y S +F Y SLDEAYLD+TE R G +
Sbjct: 67 LRRCPDLIFVRPRFDVYKAVSQAIHAIFADYTDLIQPLSLDEAYLDVTEDRRRLG-TAWA 125
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
A+E+R + E GLT SAG++ N+ LAK+ SD KPNGQF + + A ++ +LP+
Sbjct: 126 TAKEIRARILAETGLTASAGISYNKFLAKLASDHRKPNGQFAVTPEMGAA--WVETLPVS 183
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
+ G+G VT +R + GI T ++ K A S A+++ + G+ R
Sbjct: 184 RFHGVGPVTAAKMRRL-GIETGADLRAKSMDFLARHFGSNAEWYHQIVRGVDERPVNPNR 242
Query: 342 FRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
RKS SE TFS +T+D + L + ++ + +G GRT T+K+K A F++ T
Sbjct: 243 ERKSSGSETTFSRDLTDDAEIEAAVLGQADDVWEWCERTQGF-GRTATVKIKYADFQIIT 301
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
R+ + ++S E + + LL+ LP +RL+G+ V+ F
Sbjct: 302 RSRSQPAPMTSREQLHAASLALLRLVLPTPKGIRLVGVTVSNF 344
>gi|389690299|ref|ZP_10179316.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Microvirga sp. WSM3557]
gi|388589817|gb|EIM30105.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Microvirga sp. WSM3557]
Length = 378
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 132/361 (36%), Positives = 194/361 (53%), Gaps = 17/361 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +H DMDAF+A+VE NP L+GKP+AVG ++ A+YEARRFGV +AMP A
Sbjct: 26 RRVIHCDMDAFFASVEQRDNPDLRGKPVAVGGSRERGVVAAASYEARRFGVHSAMPSVTA 85
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
R+ C +LIFV F Y S R++F +Y P SLDEAYLD+TE +GI
Sbjct: 86 RRKCADLIFVKPRFDVYKQVSLQIREIFHEYTPLVEPLSLDEAYLDVTENL--KGIPYAT 143
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
++A E+R +++E GLT S G++ + LAK+ SD KPNG FV+ + F+ LPI
Sbjct: 144 QVAREIRAKIFQETGLTASVGISYQKFLAKMASDQRKPNGMFVITPEMGP--AFMEQLPI 201
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K GIG T + GI T ++ + ++ + G+
Sbjct: 202 QKFHGIGPATAAKF-NRLGIFTGLDLKGRSLEFLQERFGKAGSYYYWLAQGVDHRPVCPD 260
Query: 341 RFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKS+ +E TFS +TE +A + L I + + + G+RGRT+TLK+K A F
Sbjct: 261 RIRKSVGAENTFSNDLTELEA-MKTALQPIIDKVWRHCDQTGVRGRTVTLKVKYADFHQI 319
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPSDPTQKTL 456
TR+ TL + E + + LL A +P +RL+G+ ++ N D+ S+P Q +L
Sbjct: 320 TRSRTLSGMVEGREALEAASFELLSALVPFPKPVRLLGVSLSTLNTDE---ESEPPQLSL 376
Query: 457 T 457
Sbjct: 377 A 377
>gi|322434446|ref|YP_004216658.1| DNA-directed DNA polymerase [Granulicella tundricola MP5ACTX9]
gi|321162173|gb|ADW67878.1| DNA-directed DNA polymerase [Granulicella tundricola MP5ACTX9]
Length = 368
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 135/336 (40%), Positives = 190/336 (56%), Gaps = 36/336 (10%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
R +HVDMDAFYA+VE + L+G+P+ V G S++C A+YEARRFGVR+AMP
Sbjct: 16 GRKIVHVDMDAFYASVEQRDDAGLRGRPVVVAWKGRRSVVCAASYEARRFGVRSAMPAVT 75
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 219
A +LCPE IFVP DFT+Y S R++F ++ SLDEAYLD+TE + G++
Sbjct: 76 AERLCPEAIFVPPDFTRYKAVSRAVREIFERHTDLVEPLSLDEAYLDVTE--NKLGLATA 133
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSL 278
+A+ +R + EE LT SAGVAPN+ LAK+ SD KP+G FV+ P++ V F+ L
Sbjct: 134 TRVAKMIREQIREELNLTASAGVAPNKFLAKIASDWKKPDGLFVIQPHE---VQGFLMPL 190
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD-FFLSVG-----LGL 332
P+ +I G+GKVTE ++ V GI T ++ H T + F G L
Sbjct: 191 PVGRIPGVGKVTEERMKSV-GIATVGDL--------HAMDHPTLEQHFGRYGRRLYELAR 241
Query: 333 GSTNTPQA--RFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTL 386
G P R KS+S+E TF + E + L+ R+LAE + S ++ RT+
Sbjct: 242 GVDENPVVANRSSKSLSAEDTFEKDIPLAETEPLV-RRLAEKVWLAS---RQNARMARTV 297
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLL 422
LKLKT F TR++T +S+E +L +V L
Sbjct: 298 VLKLKTKEFSTLTRSLTPLAMPTSAE-MLGDVAVFL 332
>gi|393719670|ref|ZP_10339597.1| DNA polymerase IV [Sphingomonas echinoides ATCC 14820]
Length = 361
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 180/339 (53%), Gaps = 9/339 (2%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE +P+L+G+P+AVG ++ A+YEAR FGVR+AMP A
Sbjct: 11 RKIIHIDMDAFFASVEQRDDPTLRGRPVAVGGSRARGVVAAASYEARAFGVRSAMPSVTA 70
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ CP+L+FVP F Y S R +F Y SLDEAYLD+TE G S
Sbjct: 71 LRRCPDLVFVPPRFEAYRAVSAQIRAIFDDYTDLVEPLSLDEAYLDVTEDRHGLG-SARA 129
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAE++R + E LT SAGV+ N+ +AK+ SD NKP+G V+ A F++SLP++
Sbjct: 130 IAEQIRARIKAETALTASAGVSYNKFIAKLASDQNKPDGLCVISPRHGA--AFVASLPVK 187
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
+ G+G VT + GI T ++ ++ S D+ G+ R
Sbjct: 188 RFHGVGPVTARRM-AALGIETGADLRERPLAFLHAHFGSYGDYLYGAARGVDHRPVRSER 246
Query: 342 FRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
KS+ +ERTF A L+ L + E + + RGRT+TLKL+ + F TR
Sbjct: 247 PSKSVGAERTFETDLSAPADLHAALDRVGEAAWVRIDRHSARGRTVTLKLRFSDFRTITR 306
Query: 401 AVTLQKYISSSEDI-LKHASVLLKAELPVSLRLIGLRVT 438
A +L + + HA + LP+ +RL+GL ++
Sbjct: 307 ARSLNSVVDRDAFFAIGHALLDAHLPLPLGVRLLGLTLS 345
>gi|328957028|ref|YP_004374414.1| DNA polymerase IV [Carnobacterium sp. 17-4]
gi|328673352|gb|AEB29398.1| DNA polymerase IV [Carnobacterium sp. 17-4]
Length = 377
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 126/356 (35%), Positives = 195/356 (54%), Gaps = 18/356 (5%)
Query: 98 EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEARRF 150
E RD +R +H+DMDAF+A+VE NP LKGKP+ + G ++ TANYEAR++
Sbjct: 10 EPKRDTTRKIIHIDMDAFFASVEERENPDLKGKPVIIARHPKETGGKGVVATANYEARKY 69
Query: 151 GVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE 210
GV +AM A +LCP F+ + Y S R +F +Y SLDEAYLD+T
Sbjct: 70 GVHSAMSAQKAYELCPHGNFISGHYDLYREISAEVRSIFERYTDTIEPLSLDEAYLDVT- 128
Query: 211 VCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMA 270
V + S IA+ ++ +++E LT SAGV+ N+ +AK+ SD +KP G V+P D
Sbjct: 129 VNKHNLTSATYIAKLIQRDIWQEVQLTSSAGVSYNKFIAKLASDYHKPAGITVIPPDE-- 186
Query: 271 VMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVG 329
+ F+ LPI K G+GK T + D+ I T E++ QK + L F + V
Sbjct: 187 ALDFLRKLPIEKFYGVGKKTVEKMHDL-SIYTGEDLFQKNEMELIQRFGRMGYSLYRKVR 245
Query: 330 LGLGSTNTPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 387
G+ ++ +R RKS+ E T+ ++T ++ +L +L IA + +QK G+T+
Sbjct: 246 -GIDNSPVRVSRERKSVGRELTYGKNLTTEQEVL-SELRFIANKVQLSLQKNQKHGKTVV 303
Query: 388 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 441
LK++ ++FE T+ +TL Y+ + E+I HA L L +RL+G+ VT +
Sbjct: 304 LKVRYSNFETATKRLTLPNYVKNGEEIFFHAQNLWDEIGVLDRGIRLLGITVTNLD 359
>gi|197120569|ref|YP_002132520.1| DNA-directed DNA polymerase [Anaeromyxobacter sp. K]
gi|196170418|gb|ACG71391.1| DNA-directed DNA polymerase [Anaeromyxobacter sp. K]
Length = 418
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 126/352 (35%), Positives = 199/352 (56%), Gaps = 16/352 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R+ LH+D+DAFYA+VE L +P L+G+P+ VG ++C A+YEAR+FGVR+A+P A
Sbjct: 10 RTILHLDLDAFYASVEQLDHPELRGRPVIVGGTGNRGVVCAASYEARKFGVRSALPTARA 69
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVF---CKYDPNFMAASLDEAYLDITEVCRERGIS 218
R+LCP+ +F+P F + YS+L+R+VF +Y P SLDEA+LD++ R +
Sbjct: 70 RRLCPDGVFLPPRFGR---YSELSRRVFDVYRRYTPLVEPLSLDEAFLDVS-ASRALHGT 125
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
G +IA ++ +V E GL SAGVA ++ AK+ +D+ KP+G V+P V F++ L
Sbjct: 126 GPDIARAIKAAVRGECGLAVSAGVAEVKMAAKIATDLGKPDGLVVVPAG--GVAAFLAPL 183
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNT 337
P+ ++ G+G+VTE LR + G+ T ++ + S L A + A ++ G +
Sbjct: 184 PVGRLWGVGEVTEATLRRI-GVATIGDLARMPESALAAALGPTHARGLRALARGEDAREV 242
Query: 338 PQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
KS+ +E TF + L R+L A + ++ GL G +TLK+K A F
Sbjct: 243 VPDEEAKSVGAEDTFDHDLLGRPALERELLAQAGTVGRRLRAAGLAGHVVTLKVKYADFT 302
Query: 397 VRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDKVRA 447
+ TR VTL++ I + A L + +L +RL G+ V+ F D+ R
Sbjct: 303 LVTRRVTLERATDDDRAIFEAARAQLERVDLRRPVRLTGISVSGFAGDEERG 354
>gi|433608670|ref|YP_007041039.1| DNA polymerase IV [Saccharothrix espanaensis DSM 44229]
gi|407886523|emb|CCH34166.1| DNA polymerase IV [Saccharothrix espanaensis DSM 44229]
Length = 427
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 193/343 (56%), Gaps = 9/343 (2%)
Query: 106 SWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIAR 162
S LHVDMDAFYA+VE NP L GKP+ VG + ++ ANY AR +GVR+AMP AR
Sbjct: 31 SMLHVDMDAFYASVEIRDNPELAGKPVIVGGTANRGVVSAANYLAREYGVRSAMPTAHAR 90
Query: 163 KLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEI 222
+L P +FV ++ +Y S +F P SLDEA+LD++ R + I
Sbjct: 91 RLAPHAVFVTPNYARYQEVSRGVMAIFRDITPLVEPLSLDEAFLDVSGALRRLRATPGAI 150
Query: 223 AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRK 282
AE +R V G+TCS GVAP + LAK+ S + KP+G V+P + AV+ F+ LP+
Sbjct: 151 AETIRDQVERAEGVTCSVGVAPTKFLAKLASGMCKPDGMMVVP--KAAVLEFLHPLPVSA 208
Query: 283 IGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
+ G+GK T L D G+ T ++ L V + A+ ++ GL +
Sbjct: 209 LWGVGKRTAEQL-DRVGLETVADVAATPLPRLRRVLGVALAEHLHALAQGLDDRPVVPSS 267
Query: 342 FRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
KSI +E TF V D+ LL R+L ++E + +++ GLRGRT+++K++ A F TR
Sbjct: 268 REKSIGAEETFEVDHFDRELLRRELLRLSERSAGTLRERGLRGRTVSIKVRFADFTTITR 327
Query: 401 AVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNE 442
+ TL+ ++++ K A+ LL ++P ++RLIG+R+ Q E
Sbjct: 328 SKTLRVATDVTQEVYKTAATLLDEQVPPGAVRLIGVRIEQLVE 370
>gi|304387164|ref|ZP_07369408.1| DNA-directed DNA polymerase IV [Neisseria meningitidis ATCC 13091]
gi|304338768|gb|EFM04878.1| DNA-directed DNA polymerase IV [Neisseria meningitidis ATCC 13091]
Length = 342
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 189/337 (56%), Gaps = 20/337 (5%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM A++LCP+
Sbjct: 1 MDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVATAKRLCPQA 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
++VP F Y S VF +Y SLDEAYLD+T + + E+A+E+R
Sbjct: 61 VYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS-EVAKEIRA 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
+++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+ KI G+GK
Sbjct: 120 AIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPLGKIPGVGK 177
Query: 289 VTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSI 346
VT ++ + G+ T ++ ++G LL +H + L G+ P R+ +
Sbjct: 178 VTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERPVKAERERL 232
Query: 347 SSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL 404
++ ED L L +AE L + ++ + +++TLKLKT F + TR +T
Sbjct: 233 QISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRIITRTLTY 292
Query: 405 QKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ +L+ A +L+ A +P + RLIG+ V
Sbjct: 293 SSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGV 328
>gi|94995023|ref|YP_603121.1| DNA polymerase IV [Streptococcus pyogenes MGAS10750]
gi|189044613|sp|Q1J509.1|DPO4_STRPF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94548531|gb|ABF38577.1| DNA polymerase IV [Streptococcus pyogenes MGAS10750]
Length = 364
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 207/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAY+D+T +
Sbjct: 69 AMSCKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYVDVTN--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ L K+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDMWKEVGLTCSAGVSYNKFLGKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>gi|21911131|ref|NP_665399.1| DNA polymerase IV [Streptococcus pyogenes MGAS315]
gi|28895184|ref|NP_801534.1| DNA polymerase IV [Streptococcus pyogenes SSI-1]
gi|341958651|sp|P0DA78.1|DPO4_STRP3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|341958652|sp|P0DA79.1|DPO4_STRPQ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21905342|gb|AAM80202.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
MGAS315]
gi|28810429|dbj|BAC63367.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
SSI-1]
Length = 365
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 206/368 (55%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ + A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVVALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + + I + A + E V +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFITLTKRVTLPELTRDAAQIEQVAESIFDTLPEHTVGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDK+
Sbjct: 351 TNL-EDKM 357
>gi|161870317|ref|YP_001599487.1| DNA polymerase IV [Neisseria meningitidis 053442]
gi|161595870|gb|ABX73530.1| putative DNA-damage inducible protein P [Neisseria meningitidis
053442]
Length = 342
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 189/337 (56%), Gaps = 20/337 (5%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM A++LCP+
Sbjct: 1 MDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVATAKRLCPQA 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
++VP F Y S VF +Y SLDEAYLD+T + + E+A+E+R
Sbjct: 61 VYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS-EVAKEIRA 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
+++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+ KI G+GK
Sbjct: 120 AIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPLGKIPGVGK 177
Query: 289 VTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSI 346
VT ++ + G+ T ++ ++G LL +H + L G+ P R+ +
Sbjct: 178 VTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERPVKAERERL 232
Query: 347 SSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL 404
++ ED L L +AE L + ++ + +++TLKLKT F + TR +T
Sbjct: 233 QISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRIITRTLTY 292
Query: 405 QKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ +L+ A +L+ A +P + RLIG+ V
Sbjct: 293 SSVLPDCAALLQAAQMLI-ARVPPQTEDAFRLIGIGV 328
>gi|456877106|gb|EMF92144.1| ImpB/MucB/SamB family protein [Leptospira santarosai str. ST188]
Length = 360
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 194/352 (55%), Gaps = 22/352 (6%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGF 159
SR +HVDMDAFYA+VE P KGKP+ VG S++ A+YEAR+FGV +AMP
Sbjct: 3 SRKIIHVDMDAFYASVEQRDFPEYKGKPLIVGGPPNGRSVVAAASYEARKFGVHSAMPCS 62
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS- 218
A +L P IFV F Y SD R++F +Y SLDE YLD+T ++ I
Sbjct: 63 KAAQLAPRAIFVFPRFEVYKEVSDRIREIFLEYTDRVEMLSLDEGYLDVT--FNKKNIPF 120
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISS 277
++IA+E+R+ +++ LT SAGV ++ +AK+ S+ NKPNG VLP+D V FI
Sbjct: 121 AVKIAKEIRSEIFKRTELTASAGVGNSKFIAKLASEKNKPNGLTVVLPDD---VTAFIDP 177
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LPI G+GKVT ++ + GI+T +++ K T ++ + G
Sbjct: 178 LPIGSFHGVGKVTAQKMKKL-GIHTGKDLRTKNINELVQHFGKTGIYYYKISRGEDEREV 236
Query: 338 PQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ SE TF + D+ L+R+L EIA ++K G+TLTLK+K F
Sbjct: 237 EPFRERKSLGSENTFDQDKTDREDLFRQLREIAVETERRLKKRNFAGKTLTLKIKFQDFS 296
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQ 439
++TR+ TL + I +++++ A+ L + + ++RL+G+ ++
Sbjct: 297 LKTRSKTLSEPIFNADELYSIAAELFEEFFEIKDGKQTPTKAIRLLGINLSH 348
>gi|420143241|ref|ZP_14650742.1| DNA polymerase IV (Pol IV) [Lactococcus garvieae IPLA 31405]
gi|391856760|gb|EIT67296.1| DNA polymerase IV (Pol IV) [Lactococcus garvieae IPLA 31405]
Length = 365
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 128/371 (34%), Positives = 205/371 (55%), Gaps = 29/371 (7%)
Query: 94 ILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYE 146
+L D SR +H+DMDAF+A+VE NP LKGKP+ + G ++ T +YE
Sbjct: 1 MLTFPLVNDTSRKIIHIDMDAFFASVEIRDNPELKGKPVVIARNPLETGGRGVVSTCSYE 60
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
AR FG+ +AM A +LCP+ +F+ ++ KY S+ R++F +Y AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYELCPQAVFISGNYEKYRAISEQVREIFNRYTDEVEAASIDEAYL 120
Query: 207 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 265
D+T + S I++A+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G +LP
Sbjct: 121 DVTR-NKIGSTSAIKVAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTVILP 179
Query: 266 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADF 324
A F++ LP+ K G+GK T L ++ GI T E+ LL A F +
Sbjct: 180 E---AAKDFLAELPVEKFHGVGKATGAKLHEL-GIFTGAEIQAADPLLLAERFGVYGWNL 235
Query: 325 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQK 378
FL G+ +R RKS+ ERT+S LLY ++L ++E +S ++++
Sbjct: 236 FLKAN-GIHHAPVITSRQRKSVGKERTYS-----KLLYNSEDIKKELTNLSERVSTNLKR 289
Query: 379 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGL 435
L G T+ LKL+ + F+ T+ L + I+ + + A LL+ + + +RL+G+
Sbjct: 290 HQLLGDTVVLKLRYSDFKTITKRKKLPEKINEATALAHVAQDLLEEVDYDETLGVRLLGV 349
Query: 436 RVTQFNEDKVR 446
+T F +++R
Sbjct: 350 TLTGFGAEELR 360
>gi|125625067|ref|YP_001033550.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris MG1363]
gi|389855450|ref|YP_006357694.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris NZ9000]
gi|189027668|sp|A2RNH9.1|DPO4_LACLM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|124493875|emb|CAL98869.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris MG1363]
gi|300071872|gb|ADJ61272.1| DNA polymerase IV [Lactococcus lactis subsp. cremoris NZ9000]
Length = 364
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 202/369 (54%), Gaps = 29/369 (7%)
Query: 94 ILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYE 146
+L D SR +H+DMDAF+A+VE NPSLKGKP+ + G ++ T +YE
Sbjct: 1 MLTFPLINDTSRKIIHIDMDAFFASVEVRDNPSLKGKPVVIARNPLQTGGRGVVSTCSYE 60
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
AR FG+ +AM A LCP+ IF+ ++ KYT S R++F +Y N AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDNIEAASIDEAYL 120
Query: 207 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 265
D+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P
Sbjct: 121 DVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMP 179
Query: 266 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADF 324
++ + F++ LP+ K G+GK T L G T ++ + + L F +
Sbjct: 180 DE---ALEFLAKLPVEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAERFGIYGWEL 235
Query: 325 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQK 378
F G+ ++ R RKS+ ERT+ LLY +L +I++ +S +++
Sbjct: 236 FQKAN-GIHNSKVKNHRERKSVGKERTYG-----KLLYLPDDIKAELIKISKQVSESLKR 289
Query: 379 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGL 435
L+G + LKL+ + F T+ ++ + + S EDI + A + + + + +RL+G+
Sbjct: 290 HQLKGNIIILKLRYSDFTTLTKRKSMVENLDSPEDIAEAARQIFEEIDYDESLGVRLLGV 349
Query: 436 RVTQFNEDK 444
V+ F K
Sbjct: 350 TVSGFGVQK 358
>gi|299821605|ref|ZP_07053493.1| DNA-directed DNA polymerase IV [Listeria grayi DSM 20601]
gi|299817270|gb|EFI84506.1| DNA-directed DNA polymerase IV [Listeria grayi DSM 20601]
Length = 356
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/349 (36%), Positives = 193/349 (55%), Gaps = 17/349 (4%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA++E +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASIEQRDHPEYRGKPLIIGGDPNKRGVVSTCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP+ IF+ + + Y S+ R +F +Y SLDEAYLD+T+ + G+
Sbjct: 62 TKQAVKLCPQGIFIHGNMSHYVEVSNQIRAIFHRYTDLIEPLSLDEAYLDVTD--NKVGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 276
S +A++++ +++ E GLT SAGV+ N+ +AK+ SD +KP+G V+P + F+
Sbjct: 120 KSATYLAQDIQRTIFRELGLTASAGVSYNKFIAKIASDYHKPHGITVVPPEEAE--AFLE 177
Query: 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGS 334
+PI K G+GKVT L + GI T ++ + LL + H + V G S
Sbjct: 178 GIPITKFYGVGKVTAEKLHRL-GIYTGADLKAWSEWDLLRELNKHGY-QLYRHV-RGQSS 234
Query: 335 TNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 393
R RKS+ E TF D+ ++ R L + A +S +QK G+T+ LK++
Sbjct: 235 NIVNPNRDRKSVGKETTFEKDVWDEIMIQRYLRKFAAQISERLQKIHKNGKTVVLKIRYR 294
Query: 394 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
F TR +TL +Y++ SE I + LL A S+RLIGL VT
Sbjct: 295 DFTTYTRRLTLSEYVNDSEAIFQAGKALLNASYSGEESIRLIGLTVTNL 343
>gi|333375949|ref|ZP_08467746.1| DNA-directed DNA polymerase IV [Kingella kingae ATCC 23330]
gi|332969247|gb|EGK08275.1| DNA-directed DNA polymerase IV [Kingella kingae ATCC 23330]
Length = 363
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 189/346 (54%), Gaps = 18/346 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
+R +H+DMDAFYA+VE P L G P+ V G S+IC A+YEAR+FG+R+AMP
Sbjct: 18 TRKIIHIDMDAFYASVELREQPHLCGLPVVVAWDGARSVICAASYEARQFGLRSAMPVAT 77
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ +FVP F Y S +F Y SLDEAYLD+T+ ++ +
Sbjct: 78 AKRLCPQAVFVPPHFDLYRQVSQQIHTIFQCYTDLIEPISLDEAYLDVTQNKQQLPYAS- 136
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 279
++A+++R + + GLT SAG+APN+ LAK+ SD KPNGQFV+ P++ + F+ LP
Sbjct: 137 QVAKQIRAEILAQTGLTASAGIAPNKFLAKIASDWRKPNGQFVIQPHE---IEYFLRDLP 193
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLGLGSTN 336
+ K+ G+GK T ++ G T ++ Q A H F + G+
Sbjct: 194 VGKVWGVGKKTLLKMQQ-HGWQTIGDLRQVSR---AELVHWFGKFGYRLYDLARGVDERP 249
Query: 337 TPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R R IS+E T S +K + L +++ L MQ++ ++ TLTLKLK+ F+
Sbjct: 250 VQAERERLQISTEMTLSDNLNKQAISMYLDNLSKDLWQQMQRKKMQAYTLTLKLKSTEFQ 309
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELP-VSLRLIGLRVTQFN 441
V TR+ T + E L A++ L A +P RLIGL V+
Sbjct: 310 VFTRSQTYSAAL--PEQGLLQAALQLIARMPDGEFRLIGLGVSHLQ 353
>gi|149277809|ref|ZP_01883949.1| putative DNA polymerase [Pedobacter sp. BAL39]
gi|149231497|gb|EDM36876.1| putative DNA polymerase [Pedobacter sp. BAL39]
Length = 365
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 204/351 (58%), Gaps = 26/351 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM-----SMICTANYEARRFGVRAAMPGF 159
R +H+DMD+FYA+VE NPSLKGK +AVG ++ TA+YEAR+FGV +AMP
Sbjct: 10 RKIIHIDMDSFYASVEQRDNPSLKGKAIAVGGSPEGRGGVVATASYEARKFGVHSAMPSK 69
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-S 218
A +LCP LIFV F Y S R++F +Y SLDEAYLD+TE + GI S
Sbjct: 70 RALQLCPHLIFVYPRFAAYKEVSRHIREIFRRYTDLIQPLSLDEAYLDVTE--DKLGIGS 127
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISS 277
I+IA E++ ++ +E LT SAGV+ N+ +AKV SD++KP+G F+ P+ + FI
Sbjct: 128 AIDIAMEIKQAIKDELNLTASAGVSINKFVAKVASDMDKPDGLTFIGPSK---IERFIEQ 184
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LP+ K G+GKVT ++ + G++ ++ L +G L+ +F S FF + G+
Sbjct: 185 LPVEKFHGVGKVTAEKMK-IRGLHKGADLKKLTEGELV-HLFGKS-GHFFYKIVRGIDHR 241
Query: 336 NTPQARFRKSISSERTFSVTEDKALLY---RKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
+ KSI +E TFS ED LL +L +IA + M++ L GRTLT+K+K
Sbjct: 242 PVQANQETKSIGAEDTFS--EDLELLTEMNEELCKIAGTVCNRMEQHRLYGRTLTIKIKF 299
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRVTQF 440
+ F+ TR+ + + I + I+ A LL A +S +RL+G+ ++ F
Sbjct: 300 SDFKQITRSRSFSEPIRELDMIISIAEALLVAA-DISGKKVRLLGISISNF 349
>gi|389776484|ref|ZP_10193973.1| DNA polymerase IV [Rhodanobacter spathiphylli B39]
gi|388436634|gb|EIL93490.1| DNA polymerase IV [Rhodanobacter spathiphylli B39]
Length = 357
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 140/361 (38%), Positives = 200/361 (55%), Gaps = 26/361 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R LHVDMDAFYA+VE +PSL+GKP+AV G S++C A+YEAR FGVR+AMP A
Sbjct: 5 RKILHVDMDAFYASVEQRDDPSLRGKPVAVAWRGARSVVCAASYEARVFGVRSAMPAVSA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
+LCP+L+FVP DF +Y S R++F ++ SLDEAYLD+TE + G+ S
Sbjct: 65 ERLCPQLVFVPPDFVRYKAVSRQIREIFARHTDLIEPLSLDEAYLDVTET--KTGLPSAT 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 279
AE +R ++ EE LT SAGVAPN+ LAK+ SD KP+G FV+ P+ V F++ L
Sbjct: 123 ATAEAIRAAIREETQLTASAGVAPNKFLAKIASDFRKPDGLFVVRPHQ---VEAFLAPLK 179
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLGLGSTN 336
+ ++ G+GKV E L I T ++ +L A + + LG+
Sbjct: 180 VGRLPGVGKVMEAKL-AALQIVTVADL---RALALAELEQRFGRWGRRLHELSLGIDEHP 235
Query: 337 TPQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLR-GRTLTLKLKTA 393
R IS+E TF +T D L + ++A A Q+E R RT+ LKLKT+
Sbjct: 236 VQPDRPTLQISAEDTFEHDLTLDD--LEPHIRQLAAKAWAGYQRERERVARTVVLKLKTS 293
Query: 394 SFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQF-NEDKVRAPS 449
F TR++T S++++ A L + E P RL+G+ ++ F + D +A S
Sbjct: 294 DFRTLTRSLTPSTRPLSADELGDIACALRERVERPADSRYRLVGVGLSGFVDRDSYQAQS 353
Query: 450 D 450
D
Sbjct: 354 D 354
>gi|254514854|ref|ZP_05126915.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR5-3]
gi|219677097|gb|EED33462.1| DNA-directed DNA polymerase protein [gamma proteobacterium NOR5-3]
Length = 373
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 200/371 (53%), Gaps = 24/371 (6%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFI 160
+R +HVDMDAFYA+VE +P+L+GKP+AVG + ++ A+YEAR+FGV++AMPG
Sbjct: 9 TRKIIHVDMDAFYASVEQRDDPALRGKPLAVGGSAKRGVVAAASYEARKFGVKSAMPGVT 68
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
AR+ CP+L+FV F Y S ++F +Y SLDEAYLD+T G S
Sbjct: 69 ARRRCPQLLFVKPRFDVYRSVSRQLHEIFARYTDLIEPLSLDEAYLDVTADTAGMG-SAT 127
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IAE +R + +E LT SAGV+ N+ +AKV SD NKP+G FV+ A F+++LP
Sbjct: 128 AIAEAIRRDIRDELCLTASAGVSYNKFIAKVASDQNKPDGVFVVRPGEGA--DFVAALPA 185
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
R+ G+G T + GI++ ++ + +A + G
Sbjct: 186 RRFYGVGPRTAERM-STLGIHSGADIRAQSLHFLEQHFGKSAQYLYRASRGEDYRPVRPD 244
Query: 341 RFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKSI ERT++ ED L L + L I +++ + + GRT+TLK+K A F+
Sbjct: 245 RQRKSIGGERTYA--EDLLLDEDLRKALEHIIDIVWERIDRHRSLGRTVTLKVKYADFQQ 302
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT---------QFNEDKVR 446
TRA ++ + + D + + LL+A LPV +RL+GL ++ N V
Sbjct: 303 ITRARSVSPPVETRADFERLSRELLEALLPVPKGVRLLGLTLSGLEAPQAAGSLNPGVVA 362
Query: 447 APSDPTQKTLT 457
PS P Q++L
Sbjct: 363 EPS-PVQESLA 372
>gi|418058732|ref|ZP_12696699.1| DNA polymerase IV [Methylobacterium extorquens DSM 13060]
gi|373567718|gb|EHP93680.1| DNA polymerase IV [Methylobacterium extorquens DSM 13060]
Length = 408
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 138/373 (36%), Positives = 204/373 (54%), Gaps = 36/373 (9%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPG 158
D R +HVDMDAFYA+VE +PSL+G+P+AVG ++ A+YEAR+FGVR+AM
Sbjct: 54 DRPRKIIHVDMDAFYASVEQRDDPSLRGRPIAVGGSRERGVVAAASYEARKFGVRSAMAS 113
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI- 217
A++ CPEL+FV F Y S R +F ++ P SLDEAYLD+TE +G+
Sbjct: 114 VTAKRKCPELVFVKPRFEVYREVSMAIRAIFAEHTPIIEPLSLDEAYLDVTENL--KGLE 171
Query: 218 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
+ EIA E++T++ E LT SAGV+ + LAK+ SD KP+G FV+ RM F+ +
Sbjct: 172 TATEIAREIKTAIRERLNLTASAGVSYQKFLAKIASDYRKPDGLFVI-TPRMGP-EFVLT 229
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTN 336
LP+ + GIG TE + + GI T ++ K + L F S A +F + G+
Sbjct: 230 LPVGRFHGIGPATEAKMARL-GIATGADLKSKSLAFLQEHFGKSGA-YFHGIARGVDHRP 287
Query: 337 TPQARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LSADMQK-------EGLRGRTL 386
R RKS+ +E TF R LA I EM L + K G+R RT+
Sbjct: 288 VRPDRIRKSVGAENTFE---------RDLAGIEEMREHLQPIVDKVWSRCAATGVRCRTV 338
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFNEDK 444
TLK+K + FE TR+ + + S +D+ A+ LL+ P+ L RL+G+ ++ + ++
Sbjct: 339 TLKVKFSDFEQITRSRSTAVDVGSRDDLEGIAADLLRQLFPMRLGVRLLGVTMSGLDNER 398
Query: 445 VRAPSDPTQKTLT 457
+P Q +L
Sbjct: 399 ----EEPRQLSLA 407
>gi|256426123|ref|YP_003126776.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
gi|256041031|gb|ACU64575.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
Length = 371
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/360 (35%), Positives = 205/360 (56%), Gaps = 21/360 (5%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM-----SMICTANYEARR 149
+E E + L R +H+DMDAFYA+VE NP +GK +AVG ++ TA+YEAR+
Sbjct: 1 MESETNKKL-RKIIHIDMDAFYASVEQRDNPEYRGKAIAVGGSPEGRGGVVATASYEARK 59
Query: 150 FGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDIT 209
FGVR+AMP A +LCPELIF+ F Y S R++F ++ SLDEA+LD+T
Sbjct: 60 FGVRSAMPSKRALQLCPELIFIRPRFDVYKEASRKIREIFSRHTDIIEPLSLDEAFLDVT 119
Query: 210 EVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDR 268
E ++ G S IEIA+ ++ ++ +E LT SAGV+ N+ +AK+ SD+NKP+G F+ P+
Sbjct: 120 EDKQQIG-SAIEIAKLIKQAIKDELQLTASAGVSVNKFVAKIASDLNKPDGLTFIGPS-- 176
Query: 269 MAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSV 328
++ +F+ LP+ K G+GKVT ++ + G++T ++ + F+ +
Sbjct: 177 -SIESFMEKLPVEKFFGVGKVTADKMKRM-GLHTGADLKRLSENDLKTHFGKVGAFYYRI 234
Query: 329 GLGLGSTNTPQARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGR 384
G+ R KS+ +E TF + TE+ + +L +IA + +++ GL+GR
Sbjct: 235 VRGIDEREVQPHRETKSLGAEDTFPYDLTRTEE---MNAELEKIAVTVYERLKRYGLKGR 291
Query: 385 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQFNE 442
T+TLK+K + F TR + + E IL+ A LL + P +RL+G+ ++ F E
Sbjct: 292 TVTLKIKYSDFRQITRNQSFPVPVGDLEKILETAKQLLLSTEPEDKPVRLLGISLSNFGE 351
>gi|168187738|ref|ZP_02622373.1| DNA polymerase IV [Clostridium botulinum C str. Eklund]
gi|169294384|gb|EDS76517.1| DNA polymerase IV [Clostridium botulinum C str. Eklund]
Length = 347
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 126/352 (35%), Positives = 199/352 (56%), Gaps = 20/352 (5%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R LHVDMDAF+A+VE + PSLKGKP+ VG +S ++ T +YEAR++G+R+AMP +
Sbjct: 1 MDRVILHVDMDAFFASVEVMDKPSLKGKPVVVGGISERGVVSTCSYEARKYGIRSAMPVY 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVF---CKYDPNFMAASLDEAYLDITEVCRERG 216
A+ LCP +F+PT ++ Y +++RKVF K S+DEAYLDIT +
Sbjct: 61 KAKALCPSAVFLPT---RHYRYKEISRKVFEILSKVTNKIEQVSIDEAYLDITNI----N 113
Query: 217 ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 276
++ ++A ++ + E GLT S G++ N+ LAK+ SD NKP+G ++ D + +
Sbjct: 114 MNPKDLAVNIKNMIKENMGLTISVGISYNKFLAKLASDWNKPDGLKIITKDMIP--DILM 171
Query: 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGST 335
L I K+ GIG+ + L ++ GI T +++ L F D + + G+ +
Sbjct: 172 PLSINKVHGIGRKSAKKLNNI-GIFTVKQLYTLPKKLFYEYFGKFGLDIYNRIR-GIDNR 229
Query: 336 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
R +KSI E T T+DK L + L A + + ++G+T+TLK+KTA
Sbjct: 230 EVITVREQKSIGKETTLKKDTKDKDELKKFLWIFAINIEEKLTTSNVKGKTITLKIKTAY 289
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFNEDKV 445
FE TR+ +L KYISS ++I K A +L + E +RLIG ++ + +V
Sbjct: 290 FENHTRSKSLDKYISSRQEIYKVACAILDSIEFSEKIRLIGTSISSLKDVEV 341
>gi|436836274|ref|YP_007321490.1| DNA-directed DNA polymerase [Fibrella aestuarina BUZ 2]
gi|384067687|emb|CCH00897.1| DNA-directed DNA polymerase [Fibrella aestuarina BUZ 2]
Length = 364
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 192/348 (55%), Gaps = 22/348 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP+L+GKP+AVG ++ A+YEAR FGVR+AMP A
Sbjct: 7 RKIIHIDMDAFYASVEQRDNPALRGKPVAVGGSRERGVVAAASYEARVFGVRSAMPSSTA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
R+ CP+L+FV F Y S R +F +Y P SLDEAYLD+TE R S +
Sbjct: 67 RRKCPDLLFVKPRFDVYKAVSQQIRAIFAEYTPLIEPLSLDEAYLDVTE-NRPGLASATQ 125
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA E++ + E GLT SAGV+ N+ LAK+ SD NKP+G FV+ + A + F+ SL +
Sbjct: 126 IAREIKVKIREATGLTASAGVSYNKFLAKLASDHNKPDGLFVIKPE--AGLAFVESLRVG 183
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
+ GIG T + + GI T ++ + F+ ++ + + R
Sbjct: 184 QFHGIGPATAGKMNQL-GIATGLDLRHQTEAFLVRHFGKMGHFYHAIAHAIDNRPVRPDR 242
Query: 342 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSA---DMQKEGLR----GRTLTLKLKTAS 394
RKS+ SE TF+ L+ + E+ + LS D+ ++ +R GRTLTLK+K A
Sbjct: 243 ERKSVGSETTFATD-----LF-EWDELTDGLSGPITDLWQDCVRLQTTGRTLTLKIKFAD 296
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
F+ TR+ + I+S + LL+ +LP+ +RL+G+ ++
Sbjct: 297 FQQITRSRSFGSPIASEAQLTYLTHELLRTQLPLPKGVRLLGVSLSNL 344
>gi|294502105|ref|YP_003566170.1| DNA polymerase IV, damage-inducible protein P [Salinibacter ruber
M8]
gi|294342089|emb|CBH22754.1| DNA polymerase IV, damage-inducible protein P [Salinibacter ruber
M8]
Length = 393
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 199/363 (54%), Gaps = 38/363 (10%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNP-SLKGKPMAVG---TMSMICTANYEARRFGVRAAMP 157
+ +R LHVDMDAFYA++E P G+P+AVG ++ A+YEAR +GV +A P
Sbjct: 31 EAARRILHVDMDAFYASIEQRDFPDKYAGEPIAVGGDPPTGVVKAASYEARPYGVHSAQP 90
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A + CP LIFVP Y S R++ +Y SLDEAYLD+TE ++
Sbjct: 91 AVEADRQCPGLIFVPPRMEVYQEESRRIREILRRYTDVIEPLSLDEAYLDVTE-PKKGPP 149
Query: 218 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFIS 276
SG +A +R +Y+E GLT SAGV P++ +AKV SD +KP+G V+ P ++ + FI+
Sbjct: 150 SGTLVARRIREEIYQETGLTASAGVGPSKFVAKVASDRDKPDGLTVIRPEEQ---LDFIA 206
Query: 277 SLPIRKIGGIGKVTEHILRDVFGI-------NTCEEMLQKGSLLCAVFSHSTADFFLSVG 329
LP+ GIG VTE ++++ GI +T E+ L++ F F
Sbjct: 207 GLPVGDFHGIGPVTEEKMQEM-GIESGAGLQDTPEKALRR------RFGKRGGHFKK--- 256
Query: 330 LGLGSTNTP--QARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG----- 380
L +G + P R KS+ +ERTFS ++E K +L R L IAE ++ + G
Sbjct: 257 LAMGEDDRPVQPDRESKSVGAERTFSEDISEPKEMLSR-LEPIAERVAGRLGSAGPEGTP 315
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
+RGRT+TLKLK+ EV TR TL++ I S E +++ A LL P +RL+GL V+
Sbjct: 316 VRGRTVTLKLKSHDHEVSTRQTTLRRAIRSEEALMRLAKWLLSRPHPPEEPVRLLGLSVS 375
Query: 439 QFN 441
Sbjct: 376 SLT 378
>gi|150019053|ref|YP_001311307.1| DNA polymerase IV [Clostridium beijerinckii NCIMB 8052]
gi|149905518|gb|ABR36351.1| DNA-directed DNA polymerase [Clostridium beijerinckii NCIMB 8052]
Length = 348
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 126/347 (36%), Positives = 192/347 (55%), Gaps = 11/347 (3%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKL 164
LHVDMDAF+A+VE NP +KGKP+ VG +S ++ T +YEAR++GV +AMP F+AR+
Sbjct: 6 LHVDMDAFFASVEQRDNPDIKGKPVIVGGISERGVVSTCSYEARKYGVHSAMPMFMAREK 65
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 224
CP IFV + KY S ++F + P S+DE +LD+++ + GIE A
Sbjct: 66 CPNGIFVSGRYGKYAKVSQEIFEIFNEVTPLVEPVSIDEGFLDLSQ---GKIKDGIEAAR 122
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 284
++ V++E GLT S G++ N+ LAK+ S+ NKPNG + + + + F LPI K+
Sbjct: 123 YIKNRVFKEVGLTLSIGISYNKFLAKLASEWNKPNGIKEIRKEMIPDILF--PLPISKVH 180
Query: 285 GIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRK 344
G+GKV+ L ++ GI EE+ + + G+ R RK
Sbjct: 181 GLGKVSVAKLNNM-GIYYIEELYKMPKEFYIEYLGKNGIEIYDRIRGIDGRKVELIRERK 239
Query: 345 SISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVT 403
SI ERT T++K L + E + + + ++ + G+T+TLK KT FE TR+ T
Sbjct: 240 SIGKERTLKFDTKNKEELREYIKEFSFEIEEILNRKNVSGKTVTLKFKTKDFENHTRSKT 299
Query: 404 LQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPS 449
L YI + +I K A LL +E L +RLIG+ ++ F E +V+ S
Sbjct: 300 LNYYIGTQLEIYKVAEELLDSEQLKEEVRLIGVSISSFKETEVQQMS 346
>gi|239905076|ref|YP_002951815.1| DNA polymerase IV [Desulfovibrio magneticus RS-1]
gi|239794940|dbj|BAH73929.1| DNA polymerase IV [Desulfovibrio magneticus RS-1]
Length = 394
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/339 (36%), Positives = 188/339 (55%), Gaps = 8/339 (2%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTM--SMICTANYEARRFGVRAAMPGFIARKLC 165
LH+DMDAF+A+VE PSLKGKP+ +G ++ A+YEAR +GVR+AMP A++ C
Sbjct: 5 LHLDMDAFFASVEQHDEPSLKGKPVIIGHHHRGVVSAASYEARVYGVRSAMPVSEAKRRC 64
Query: 166 PELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEE 225
P +F+P + +Y+ S + + ++ P AS+DEAY+DIT G +A
Sbjct: 65 PHGVFLPGNRRRYSEVSRIVMETLGRFSPLVEPASIDEAYVDITGSQTLFGPPET-MARA 123
Query: 226 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGG 285
++ + E GL CS GVAP + +AK+ SD +KP+G ++ + + F+ LP+ KI G
Sbjct: 124 MKADIREATGLPCSVGVAPVKFIAKIASDYDKPDGLTIVTPE--TALDFLGPLPVSKIPG 181
Query: 286 IGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKS 345
+GK E L + GI ++ + A GS R KS
Sbjct: 182 VGKRAEESLARL-GIRVVADIRRHEPEFLARHCGKWGLDLYDKAHARGSAVVCTDREAKS 240
Query: 346 ISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL 404
+S+E TF T D+ +L L + AE + ++++E LRGRT+T+KLK +F+ TR+ TL
Sbjct: 241 VSAENTFEADTADRDILAAWLLKQAERVGRELRQESLRGRTVTIKLKFNTFKQITRSRTL 300
Query: 405 QKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNE 442
+ +S I + A LL AE LP LRLIG+ V+QF E
Sbjct: 301 AEPTASDSAIFETARALLDAEPLPHPLRLIGVGVSQFGE 339
>gi|241258700|ref|YP_002978584.1| DNA polymerase IV [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240863170|gb|ACS60833.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 365
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 196/355 (55%), Gaps = 14/355 (3%)
Query: 98 EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRA 154
E +R+ R +HVDMDAFYA+VE NP L+G P+AVG+ + ++ A+YEAR+FGV +
Sbjct: 5 EESRERPRKIVHVDMDAFYASVEQRDNPELRGLPVAVGSPAARGVVAAASYEARKFGVHS 64
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AMP A++ CP+LIFV F Y S R VF +Y P SLDEAYLD+TE +
Sbjct: 65 AMPSVTAQRKCPDLIFVKPRFDVYKAVSLQIRTVFAEYTPMIEPLSLDEAYLDVTENLKG 124
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMT 273
I+ EIA E+R + GLT SAG++ N+ LAK+ SD NKP+GQFV+ P + A
Sbjct: 125 MEIA-TEIAAEIRAKIKATTGLTASAGISYNKFLAKMASDQNKPDGQFVITPKNGPA--- 180
Query: 274 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGL 332
F+ LP++K G+G T ++ + GI T ++ ++ L F S +F + G+
Sbjct: 181 FVERLPVKKFHGVGPATAEKMQRL-GIETGADLKERTLDFLVEHFGKS-GPYFYGIARGI 238
Query: 333 GSTNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLK 391
+ R RKSI +E TFS R+ L + + + + + +T+TLK+K
Sbjct: 239 DNRQVKPDRVRKSIGAEDTFSQDIHSFEPAREGLQPLISKVWSYCEANEIGAKTVTLKVK 298
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 444
A F TR+ T+ + + D+ + +LL P +RL+G+ ++ + +
Sbjct: 299 YADFSQITRSKTVPAPLPAITDLDEVVDLLLAPIFPPRKGIRLLGVTLSSLEKRR 353
>gi|103486248|ref|YP_615809.1| DNA polymerase IV [Sphingopyxis alaskensis RB2256]
gi|98976325|gb|ABF52476.1| DNA-directed DNA polymerase [Sphingopyxis alaskensis RB2256]
Length = 376
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 132/364 (36%), Positives = 197/364 (54%), Gaps = 14/364 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +P+L+GKP+AVG S ++ A+YEARRFGVR+AMP A
Sbjct: 19 RKIIHVDMDAFYASVEQRDDPALRGKPVAVGGSSRRGVVAAASYEARRFGVRSAMPSITA 78
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP LIFVP F Y S R +F Y SLDEAYLD++ G S
Sbjct: 79 KRQCPGLIFVPPRFEVYREVSHQIRAIFRDYADEVEPLSLDEAYLDVSADKAGLG-SATA 137
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
A +R + EE GLT SAGV+ N+ +AK+ SD NKP+G V+P + A F+ +L IR
Sbjct: 138 TARLIRRRIREETGLTASAGVSYNKFIAKLASDQNKPDGLTVIPPGKGA--AFVQTLSIR 195
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
+ GIG VT + + G+ + ++ K L A ++A++ ++ G+ R
Sbjct: 196 RFHGIGPVTAAKMEGL-GVFSGADLAAKDPLWLAEHFANSAEWLYNLARGIDHRRVKSNR 254
Query: 342 FRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
KS+ ERTF +T+ + + LA + ++ K+G RGRT+TLKL+ A F
Sbjct: 255 PLKSLGGERTFFNDLITDTE--IREALAHVCTVVWDRAVKKGARGRTVTLKLRYADFRTI 312
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPSDPTQKTL 456
TRA ++ I +L +L LP +RL+G+ +++F ++ P L
Sbjct: 313 TRAKSVPSPIRDGASLLAVGEAILAPLLPSEQGIRLLGVTLSKFEGEEEEGDEAPAPADL 372
Query: 457 TNFM 460
+ +
Sbjct: 373 LSLI 376
>gi|374586349|ref|ZP_09659441.1| DNA polymerase IV [Leptonema illini DSM 21528]
gi|373875210|gb|EHQ07204.1| DNA polymerase IV [Leptonema illini DSM 21528]
Length = 372
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 197/347 (56%), Gaps = 19/347 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMDAFYA+VE +P L+G+P+ VG + S++CTA+YEAR+FG+R+AM
Sbjct: 22 RKIIHIDMDAFYASVEQRDDPDLRGRPVVVGGPPDSRSVVCTASYEARKFGIRSAMACSK 81
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A +LCP+ +FV F Y SD R +F Y SLDEAYLD+T + + +
Sbjct: 82 AYRLCPDAVFVFPRFDVYKEVSDQIRAIFVSYTDLVEPLSLDEAYLDVTS-NKFQIPYAV 140
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLP 279
IA +++ + EE GLT SAGVA + LAK+ S +NKP+G +LP+ +A F+ +LP
Sbjct: 141 TIARQIKARIKEETGLTASAGVASGKFLAKIASGMNKPDGLTVILPDQAIA---FLEALP 197
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTP 338
+ G+GKVTE +++ GI T ++ + S L ++F S + V G+
Sbjct: 198 VGDFFGVGKVTEKKMKE-HGIFTGADLKSRSLSELVSLFGKSGMHLYRLV-RGIDEAPVI 255
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ E TFS D L ++L ++AE LS + + G GRT+T+K+K A FE
Sbjct: 256 PFRERKSVGIEDTFSADVSDVVELMQRLRQLAEGLSFRLARHGKPGRTITVKVKYADFET 315
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAEL----PVSLRLIGLRVTQF 440
+++ T +++ + + LL+ L PV RL+GL V F
Sbjct: 316 HSKSETRSSIPVAADALHQMGRSLLEQLLEEGRPV--RLLGLSVHGF 360
>gi|259046578|ref|ZP_05736979.1| DNA-directed DNA polymerase [Granulicatella adiacens ATCC 49175]
gi|259036743|gb|EEW37998.1| DNA-directed DNA polymerase [Granulicatella adiacens ATCC 49175]
Length = 352
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 133/352 (37%), Positives = 197/352 (55%), Gaps = 19/352 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM----SMICTANYEARRFGVRAAMPGFI 160
R LHVDMDAF+A+VE +P +GKP+ VG ++ T +YEAR FGVR+AMP
Sbjct: 2 RKILHVDMDAFFASVEQREHPEWRGKPVIVGGKPNERGVVSTCSYEARAFGVRSAMPTAK 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 219
A KLCP+ I P +++ Y S R+VF + S+DEAYLD+T RGI S
Sbjct: 62 AMKLCPKAILTPGNYSLYKEISSQVREVFKSFTNMIEPLSIDEAYLDVTN--NSRGIASA 119
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
+A ++ VYE+ GLTCS GV+ N+ LAK+ S KP+G V+ + FI ++P
Sbjct: 120 TLVAHLIQKEVYEKTGLTCSVGVSFNKFLAKMASGYQKPSGITVITPEN--AQEFIRTIP 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
I G+GKV+ LR GI T E++L + L + F + + V G+ +
Sbjct: 178 IGDFYGVGKVSAEKLRRA-GIETGEDLLHLSKAELESRFGNLGPRLYAQVR-GISNDQLT 235
Query: 339 QARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ SERT T D +L L + + +++ +QK L RT++LKL+ ++F
Sbjct: 236 LYRERKSMGSERTLIKDTTDHGILSEYLEKFSLEIASMLQKRALASRTISLKLRDSNFNT 295
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGLRVTQFNE-DKV 445
+++VTL+ Y + E+IL+ A L + E P+ RLIGL V+ + DK+
Sbjct: 296 TSKSVTLRDYFNKKEEILQLALQLFEEMMDEKPI--RLIGLSVSHLEKTDKI 345
>gi|94989203|ref|YP_597304.1| DNA polymerase IV [Streptococcus pyogenes MGAS9429]
gi|94993090|ref|YP_601189.1| DNA polymerase IV [Streptococcus pyogenes MGAS2096]
gi|417856180|ref|ZP_12501239.1| DNA polymerase IV [Streptococcus pyogenes HKU QMH11M0907901]
gi|189044610|sp|Q1JA16.1|DPO4_STRPB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044611|sp|Q1JK63.1|DPO4_STRPC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94542711|gb|ABF32760.1| DNA polymerase IV [Streptococcus pyogenes MGAS9429]
gi|94546598|gb|ABF36645.1| DNA polymerase IV [Streptococcus pyogenes MGAS2096]
gi|387933135|gb|EIK41248.1| DNA polymerase IV [Streptococcus pyogenes HKU QMH11M0907901]
Length = 364
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 207/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE N +LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNLALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY + R++F +Y S+DEAYLD+T +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYLDVTN--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>gi|218780742|ref|YP_002432060.1| DNA-directed DNA polymerase [Desulfatibacillum alkenivorans AK-01]
gi|254781919|sp|B8FBE8.1|DPO4_DESAA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|218762126|gb|ACL04592.1| DNA-directed DNA polymerase [Desulfatibacillum alkenivorans AK-01]
Length = 396
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 127/342 (37%), Positives = 192/342 (56%), Gaps = 16/342 (4%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKL 164
+HVDMDAFYA+VE L NP L+G+ + VG S ++C+A+YEAR GVR+AMP ARKL
Sbjct: 7 IHVDMDAFYASVELLDNPELRGQCVIVGGASNRGVVCSASYEARALGVRSAMPIVTARKL 66
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 224
CP +F+P +Y S ++F +Y P SLDEA++D+T R G SG EIA
Sbjct: 67 CPRGVFLPVRRARYQEISRKVFEIFHQYTPLVEPISLDEAFMDVTSSTRLFG-SGEEIAA 125
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 284
+R + G+T SAG+A N+L+AK+ SD+ KPNG V+P D+ F+ LPI ++
Sbjct: 126 NIRRQIESSLGITASAGIAKNKLVAKIASDLCKPNGLLVVPADQ--TQEFLDPLPISRLW 183
Query: 285 GIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR 343
G+G + + L G+ T ++ + +L A F + + + G+
Sbjct: 184 GVGPASRNKLIS-LGVKTIRDVRKLTQEMLSANFGRN-GEVIYAFARGMDDRPVEPPGAA 241
Query: 344 KSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
KSI E TF T ++A Y+ + ++E ++ M+KE GRT+ +K+K A F TR
Sbjct: 242 KSIGREITFDRNVYTLEEA--YKWMLFLSERVARRMRKEEATGRTVNIKVKYADFIQVTR 299
Query: 401 AVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 440
+VTL+ +I HA LL+ L S +RL+G+ ++Q
Sbjct: 300 SVTLESPTDDPGEIYTHAKKLLQKTLVGSKAVRLLGVTLSQL 341
>gi|424877038|ref|ZP_18300697.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
gi|393164641|gb|EJC64694.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium leguminosarum bv. viciae WSM1455]
Length = 364
Score = 196 bits (498), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 129/348 (37%), Positives = 189/348 (54%), Gaps = 14/348 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+G P+AVG T ++ A+YEAR FGV +AMP A
Sbjct: 11 RKIVHVDMDAFYASVEQRDNPELRGLPVAVGSPATRGVVAAASYEARTFGVHSAMPSVTA 70
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CPELIFV F Y S R +F +Y P SLDEAYLD+TE + I+ E
Sbjct: 71 QRKCPELIFVKPRFDVYKAVSLQIRTIFAEYTPMIEPLSLDEAYLDVTENLKGMEIA-TE 129
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + GLT SAG++ N+ LAK+ SD NKPNGQFV+ P + A F+ LP+
Sbjct: 130 IAAEIRARIKSTTGLTASAGISYNKFLAKMASDQNKPNGQFVITPKNGPA---FVERLPV 186
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+K G+G T + + GI+T ++ +K L F S +F + G+ +
Sbjct: 187 KKFHGVGPATAEKMHRL-GIDTGADLKEKTLDFLVEHFGKS-GPYFYGIARGIDNRLVKP 244
Query: 340 ARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKS+ +E TFS R+ L + E + + + +T+TLK+K A F
Sbjct: 245 DRVRKSVGAEDTFSQDIHSFEPAREGLQPLIEKVWGYCEANEIAAKTVTLKVKYADFSQI 304
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 444
TR+ T + + D+ + +LL P +RL+G+ ++ + +
Sbjct: 305 TRSKTALAPLPAITDLDEVVGLLLAPLFPPRKGIRLLGVTLSSLEKRR 352
>gi|291514181|emb|CBK63391.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Alistipes shahii WAL 8301]
Length = 356
Score = 196 bits (498), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 190/340 (55%), Gaps = 16/340 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P +G+P+AVG ++ TA+YEAR +GV +A+ +A
Sbjct: 4 RKIIHIDMDAFYASVEQRDRPEYRGRPIAVGYDGPRGVVATASYEARPYGVHSALSSVLA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCPELIFVP F Y S R +F +Y SLDEA+LD++ V S
Sbjct: 64 KRLCPELIFVPARFDVYKAVSRQIRAIFGEYTELVEPLSLDEAFLDVSHVR-----SATL 118
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A E++ + E GLT SAG++ N++LAK+ SD KP+G F +P +R + F++ LP+
Sbjct: 119 VAREIKAHILAETGLTASAGISVNKMLAKIASDYRKPDGLFTIPPER--IEEFVAGLPVE 176
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+ GIG+VT + + GI T ++ L + L F + ++ G+
Sbjct: 177 RFFGIGEVTAEKMHRL-GIRTGADLRLWNEAALVQQFGKAGHSYY-GYARGIDEREVTPN 234
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TF+ T+D+ L +L+ + E + + + RG+T+ LKLK +F T
Sbjct: 235 RVRKSLGAETTFAEDTDDRERLRLELSAVREEVWNRVMRHEFRGKTVVLKLKFDNFRQIT 294
Query: 400 RAVTLQKYISSSEDILKHASVLLKAE--LPVSLRLIGLRV 437
R+ TL + S+E + + + LL A +RLIGL V
Sbjct: 295 RSKTLFTPVDSAETLRRVSEELLAAADFHGRKIRLIGLTV 334
>gi|146320049|ref|YP_001199760.1| DNA polymerase IV [Streptococcus suis 98HAH33]
gi|253751099|ref|YP_003024240.1| DNA polymerase IV [Streptococcus suis SC84]
gi|253753000|ref|YP_003026140.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|253754823|ref|YP_003027963.1| DNA polymerase IV [Streptococcus suis BM407]
gi|386577190|ref|YP_006073595.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|386581236|ref|YP_006077640.1| DNA polymerase IV [Streptococcus suis SS12]
gi|386587467|ref|YP_006083868.1| DNA polymerase IV [Streptococcus suis A7]
gi|403060877|ref|YP_006649093.1| DNA polymerase IV [Streptococcus suis S735]
gi|189044615|sp|A4VZ21.1|DPO4_STRS2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|145690855|gb|ABP91360.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus suis 98HAH33]
gi|251815388|emb|CAZ50961.1| DNA polymerase IV [Streptococcus suis SC84]
gi|251817287|emb|CAZ55017.1| DNA polymerase IV [Streptococcus suis BM407]
gi|251819245|emb|CAR44505.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|292557652|gb|ADE30653.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|353733382|gb|AER14392.1| DNA polymerase IV [Streptococcus suis SS12]
gi|354984628|gb|AER43526.1| DNA polymerase IV [Streptococcus suis A7]
gi|402808203|gb|AFQ99694.1| DNA polymerase IV [Streptococcus suis S735]
Length = 355
Score = 196 bits (498), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 202/364 (55%), Gaps = 42/364 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
DLSR +HVDMDAF+AA+E +P+LKGKP+ +G ++ T NYEAR FG+ +
Sbjct: 9 DLSRKIIHVDMDAFFAAIEVRDSPALKGKPVIIGADPRLSGGRGVVSTCNYEARAFGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY R++F +Y S+DEAYLD+TE +
Sbjct: 69 AMSSKEAYERCPQAIFISGNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP+G +LP D + ++
Sbjct: 127 LGISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGIL 186
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
+SLP+ K G+GK T L ++ G+ T +++L ++ D F G L
Sbjct: 187 ---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL-------IDRFGRFGFDL 235
Query: 333 -----GSTNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEMLSADMQKE 379
G +N+P R RKS ERT+ + LLYR +L + + ++A +++
Sbjct: 236 YRKARGISNSPVKVDRVRKSSGKERTY-----RKLLYREEDVLKELISLCQRVAASLKRN 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G +GRT+ LK++ F T+ +L+ Y +E I K L++ ++ +RL+G+ V
Sbjct: 291 GKKGRTIVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEEIGKIEKGIRLLGVTV 350
Query: 438 TQFN 441
T F
Sbjct: 351 TNFQ 354
>gi|256822627|ref|YP_003146590.1| DNA-directed DNA polymerase [Kangiella koreensis DSM 16069]
gi|256796166|gb|ACV26822.1| DNA-directed DNA polymerase [Kangiella koreensis DSM 16069]
Length = 369
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 115/272 (42%), Positives = 156/272 (57%), Gaps = 10/272 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +HVDMD +YAA+E +PSL+ P+AVG +I T NYEAR +GVR+AMP
Sbjct: 12 RKIIHVDMDCYYAAIEMRDDPSLQNHPIAVGGSPDRRGVIATCNYEARSYGVRSAMPSAY 71
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
AR+LCP LI VP +F KY + S + R +F +Y SLDEAYLD+T+ C E S
Sbjct: 72 ARRLCPGLIIVPPNFDKYRHDSKVIRDIFAQYTDLIEPLSLDEAYLDVTD-CTEYKGSAT 130
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+ +R ++E+ LT SAGVAPN+ LAK+ SD NKPNGQFVL D V F+ LP+
Sbjct: 131 YIAQAIRYQIFEKLQLTASAGVAPNKFLAKIASDWNKPNGQFVLTPDE--VEGFVERLPV 188
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
KI G+GK T + + GI TC+E+ + L + S + G+ +
Sbjct: 189 NKIHGVGKKTAEKFQRM-GIETCKELREVDLLTLSKTFGSFGQRLYELSRGIDNRKVITH 247
Query: 341 RFRKSISSERTFSVTEDKALLYRKLAEIAEML 372
RKS+S E T+ +D L L E+ +L
Sbjct: 248 YPRKSLSVENTYD--QDLVTLEECLEELPHLL 277
>gi|325280117|ref|YP_004252659.1| DNA polymerase IV [Odoribacter splanchnicus DSM 20712]
gi|324311926|gb|ADY32479.1| DNA polymerase IV [Odoribacter splanchnicus DSM 20712]
Length = 363
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 133/375 (35%), Positives = 200/375 (53%), Gaps = 40/375 (10%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFI 160
+R +H+DMDAFYA+VE +P +GKP+AVG ++ A+YEAR+FG+R+AM
Sbjct: 6 NRKIIHIDMDAFYASVEQRDHPEYRGKPLAVGRPEERGVVAAASYEARKFGIRSAMSSMQ 65
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP+LIFV Y S+ ++F +Y +LDEA+LD+TE + ++ +
Sbjct: 66 ALKLCPDLIFVRGRMEHYKAVSEEIHRIFHEYTDLIEPLALDEAFLDVTENKKNIPLA-V 124
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA ++ + E+ GL SAGV+ N+ LAK+ SD KP+G FV+ + A FI+ LPI
Sbjct: 125 DIARAIKKEIREKLGLVASAGVSYNKFLAKIASDYRKPDGLFVIHPRKAA--AFIARLPI 182
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM-----------LQKGSLLCAVFSHSTADFFLSVG 329
GIGKVT H + GI+ ++ K L FSH
Sbjct: 183 EVFWGIGKVTAHKMH-ALGIHNGAQLRNCSLEFLNRNFGKAGQLYYDFSH---------- 231
Query: 330 LGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 387
G+ R RKS+ E TF +T AL+ +L +A+ L + K G +G TLT
Sbjct: 232 -GVDLRPVEVVRIRKSVGCENTFEKDLTTHTALII-ELWHVADELIRRLGKAGFKGHTLT 289
Query: 388 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRVTQFNEDK 444
LK+K F +TR++++ + + ++IL A LL A L ++ +RL+GL V+ +
Sbjct: 290 LKIKFHDFTQKTRSISVGHELYTMKEILPLAKQLL-AGLQLTHYRIRLMGLTVS----NP 344
Query: 445 VRAPSDPTQKTLTNF 459
V +P DP Q T
Sbjct: 345 VSSPDDPEQGIPTQL 359
>gi|387773575|ref|ZP_10128933.1| DNA polymerase IV [Haemophilus parahaemolyticus HK385]
gi|386904924|gb|EIJ69707.1| DNA polymerase IV [Haemophilus parahaemolyticus HK385]
Length = 365
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 111/269 (41%), Positives = 158/269 (58%), Gaps = 17/269 (6%)
Query: 92 KRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEA 147
K+IL++ A + +R +H+DMD FYAAVE NP LKGKP+AVG + ++ T NYEA
Sbjct: 2 KKILQMTAEQK-TRKIIHIDMDCFYAAVEIRENPLLKGKPVAVGGKANQRGVLTTCNYEA 60
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AMP A KLCP LI +P + Y S ++F +Y SLDEAYLD
Sbjct: 61 RKFGLHSAMPTATALKLCPGLILLPVNMPLYKSVSAQIHQIFRRYTQIIEPLSLDEAYLD 120
Query: 208 ITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 267
+T+ C + S IAE +R +++ E LT SAGVAP + LAK+ SD NKPNGQFV+P +
Sbjct: 121 VTD-CEQHSGSATWIAENIRQAIWNELHLTASAGVAPLKFLAKIASDQNKPNGQFVIPPE 179
Query: 268 RMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC----AVFSHSTAD 323
V F+ +LP++KI G+GKVT+ L + G+ TC+++ Q + F D
Sbjct: 180 E--VQNFVKNLPLKKIPGVGKVTQEKLAQM-GLLTCQDVQQSSQTVIYQEFGKFGQRLWD 236
Query: 324 FFLSVGLGLGSTNTPQARFRKSISSERTF 352
F + + + P RKS++ E T
Sbjct: 237 FCHGIDIREVEIDRP----RKSLAVENTL 261
>gi|386579169|ref|YP_006075574.1| DNA polymerase IV [Streptococcus suis JS14]
gi|319757361|gb|ADV69303.1| DNA polymerase IV [Streptococcus suis JS14]
Length = 355
Score = 196 bits (497), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 202/364 (55%), Gaps = 42/364 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
DLSR +HVDMDAF+AA+E +P+LKGKP+ +G ++ T NYEAR FG+ +
Sbjct: 9 DLSRKIIHVDMDAFFAAIEVRDSPALKGKPVIIGADPRLSGGRGVVSTCNYEARAFGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY R++F +Y S+DEAYLD+TE +
Sbjct: 69 AMSSKEAYERCPQAIFISGNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP+G +LP D + ++
Sbjct: 127 LGISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGIL 186
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
+SLP+ K G+GK T L ++ G+ T +++L ++ D F G L
Sbjct: 187 ---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL-------IDRFGRFGFDL 235
Query: 333 -----GSTNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEMLSADMQKE 379
G +N+P R RKS ERT+ + LLYR +L + + ++A +++
Sbjct: 236 YRKARGISNSPVKVDRVRKSSGKERTY-----RKLLYREEDVLKELISLCQRVAASLKRN 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G +GRT+ LK++ F T+ +L+ Y +E I K L++ ++ +RL+G+ V
Sbjct: 291 GKKGRTIVLKVRYGDFSTLTKRHSLEVYTDKTETIEKEVRQLIEEIGKIEKGIRLLGVTV 350
Query: 438 TQFN 441
T F
Sbjct: 351 TNFQ 354
>gi|332715601|ref|YP_004443067.1| DNA polymerase IV [Agrobacterium sp. H13-3]
gi|325062286|gb|ADY65976.1| DNA polymerase IV [Agrobacterium sp. H13-3]
Length = 359
Score = 196 bits (497), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 185/338 (54%), Gaps = 12/338 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP+L+G P+AVG ++ A+YEAR FGV +AMP A
Sbjct: 7 RKIIHIDMDAFYASVEQRDNPALRGLPVAVGGSAARGVVAAASYEARTFGVHSAMPSVTA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFVP F Y S R++F +Y P SLDEAYLD+TE + I+ E
Sbjct: 67 KRKCPDLIFVPPRFEVYRQVSQQIREIFAEYTPLIEPLSLDEAYLDVTENLKGMEIA-TE 125
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + L SAG++ N+ LAK+ SD+NKPNGQ V+ P + F+ +L +
Sbjct: 126 IALEIRAKIKAVTSLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPG---FVEALAV 182
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T ++ GI T ++ K + +F ++ G+
Sbjct: 183 KKFHGVGPATAERMKR-HGIETGLDLKSKSLGFLQQHFGKSGPYFYNIARGIDERQVKPD 241
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TF+ +D L +L +A+ + + + G+T+T+K+K + F T
Sbjct: 242 RIRKSVGAEDTFAEDIDDLNLAKAELGPLAQKVWRYCEAHDITGKTVTVKIKYSDFSQAT 301
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 435
R+ T+ +S I + + LL + P +RL+G+
Sbjct: 302 RSKTVSGAVSDLATIQEMSETLLASVFPFKRPVRLLGI 339
>gi|384141455|ref|YP_005524165.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii MDR-ZJ06]
gi|385235754|ref|YP_005797093.1| DNA polymerase IV [Acinetobacter baumannii TCDC-AB0715]
gi|387125587|ref|YP_006291469.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Acinetobacter baumannii MDR-TJ]
gi|416150487|ref|ZP_11603372.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii
AB210]
gi|417571512|ref|ZP_12222369.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC189]
gi|417874790|ref|ZP_12519632.1| DNA polymerase IV [Acinetobacter baumannii ABNIH2]
gi|421205151|ref|ZP_15662251.1| dna polymerase iv [Acinetobacter baumannii AC12]
gi|421536653|ref|ZP_15982890.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii AC30]
gi|421665373|ref|ZP_16105491.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC087]
gi|421670582|ref|ZP_16110574.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC099]
gi|421701851|ref|ZP_16141338.1| DNA polymerase IV [Acinetobacter baumannii ZWS1122]
gi|421705664|ref|ZP_16145086.1| DNA polymerase IV [Acinetobacter baumannii ZWS1219]
gi|424054052|ref|ZP_17791583.1| DNA polymerase IV [Acinetobacter baumannii Ab11111]
gi|425754620|ref|ZP_18872477.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-113]
gi|323516262|gb|ADX90643.1| DNA polymerase IV [Acinetobacter baumannii TCDC-AB0715]
gi|333363953|gb|EGK45967.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii
AB210]
gi|342227896|gb|EGT92804.1| DNA polymerase IV [Acinetobacter baumannii ABNIH2]
gi|347591948|gb|AEP04669.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii MDR-ZJ06]
gi|385880079|gb|AFI97174.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Acinetobacter baumannii MDR-TJ]
gi|395551960|gb|EJG17969.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC189]
gi|398325341|gb|EJN41519.1| dna polymerase iv [Acinetobacter baumannii AC12]
gi|404667538|gb|EKB35459.1| DNA polymerase IV [Acinetobacter baumannii Ab11111]
gi|407195442|gb|EKE66575.1| DNA polymerase IV [Acinetobacter baumannii ZWS1219]
gi|407195695|gb|EKE66822.1| DNA polymerase IV [Acinetobacter baumannii ZWS1122]
gi|409985414|gb|EKO41630.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii AC30]
gi|410384422|gb|EKP36931.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC099]
gi|410390444|gb|EKP42833.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC087]
gi|425496514|gb|EKU62640.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-113]
Length = 351
Score = 196 bits (497), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 128/346 (36%), Positives = 194/346 (56%), Gaps = 16/346 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P L+ P+ + + ++I A+Y AR+FG+R+AM A
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLRHLPVVISSHHPRAVIAAASYPARQFGLRSAMSMSQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S E
Sbjct: 62 RKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A +FI LP++
Sbjct: 121 VAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--SFIQDLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP-Q 339
KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P Q
Sbjct: 179 KIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPVQ 234
Query: 340 A-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
A R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 235 AERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQTL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 441
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 295 QHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 340
>gi|315639680|ref|ZP_07894820.1| DNA-directed DNA polymerase IV [Enterococcus italicus DSM 15952]
gi|315484641|gb|EFU75097.1| DNA-directed DNA polymerase IV [Enterococcus italicus DSM 15952]
Length = 374
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 128/355 (36%), Positives = 198/355 (55%), Gaps = 24/355 (6%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEARRFGVRA 154
DLSR +H+DMDAF+A+VE PSL P+ + G ++ TANY AR++G+ +
Sbjct: 11 DLSRKIIHIDMDAFFASVEERDAPSLAKSPLVIARHPKDTGGRGVVTTANYLARQYGIHS 70
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A +LCP+ +F+P ++ KY S R++F +Y S+DEAYLD+TE +
Sbjct: 71 AMSAQKAYELCPQAVFLPGNYEKYRAVSKQVREIFQRYTDLVEPMSIDEAYLDVTE-NKI 129
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 273
+ S I++A+ ++ ++ E LTCSAGV+ N+ LAK+ SD KP G V+P D +A
Sbjct: 130 QAKSAIKVAKCIQYDIWHELQLTCSAGVSYNKFLAKLASDYQKPRGLTVVMPEDAVA--- 186
Query: 274 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS-LLCAVFSHSTADFFLSV-GLG 331
F+ LPI K G+GK T + ++ GI+T ++ +K L F F V G+
Sbjct: 187 FLKKLPIEKFHGVGKKTVPKMHEL-GIHTGADLYEKDEFFLIQQFGKMGYSLFRKVRGIH 245
Query: 332 LGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTL 388
L T R RKS+ ERT+ TE+ L +L +++E ++ ++K G + L
Sbjct: 246 LSPVVT--TRERKSVGKERTYGTLLTTEESCL--TQLRQLSEEVADLLKKLERHGNIVVL 301
Query: 389 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
K++TA F +T+ +TL + E+I ASVL + E V +RL+G+ VT N
Sbjct: 302 KMRTADFVTKTKRMTLNRATHRKEEIFSVASVLFEEENQVDRGIRLLGVTVTGLN 356
>gi|417842070|ref|ZP_12488165.1| DNA polymerase IV [Haemophilus haemolyticus M19501]
gi|341947850|gb|EGT74491.1| DNA polymerase IV [Haemophilus haemolyticus M19501]
Length = 355
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 133/351 (37%), Positives = 190/351 (54%), Gaps = 24/351 (6%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFIARK 163
+H+DMD FYA++E NP+L+GKP+AVG S ++ T NYEAR+FG+ +AMP A K
Sbjct: 8 IHIDMDCFYASIEIRENPNLQGKPVAVGGSSRQRGVLTTCNYEARKFGLHSAMPTAQAIK 67
Query: 164 LCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIA 223
CP LI VP + T Y S ++F +Y SLDEAYLD+T C++ S IA
Sbjct: 68 KCPNLILVPVNMTLYKQVSAQIHQIFHRYTDIIEPLSLDEAYLDVTH-CQKCSGSATWIA 126
Query: 224 EELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPIRK 282
+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ PN+ V FI +L + K
Sbjct: 127 QEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNE---VEEFIKTLSLNK 183
Query: 283 IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARF 342
I G+GKVT L D+ G+ TC ++ ++ G+ R
Sbjct: 184 IPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRIWDFSHGIDDREVQAHRE 242
Query: 343 RKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
RKS+ E+T +V + AL LY +L E +S ++ R + +KLK
Sbjct: 243 RKSVGVEQTLIENIHTVEQALALLNNLYDELIRRLERVSRNIPLSSF--RKIGVKLKFED 300
Query: 395 FEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 444
F+V T T L + S + +L + K S+RLIGL V E+K
Sbjct: 301 FQVTTLEKTGLPLSLESFQQLLPQIFMRSKGR---SIRLIGLHVNLPEENK 348
>gi|281424755|ref|ZP_06255668.1| DNA-directed DNA polymerase [Prevotella oris F0302]
gi|281401125|gb|EFB31956.1| DNA-directed DNA polymerase [Prevotella oris F0302]
Length = 366
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 202/357 (56%), Gaps = 22/357 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE P L+GKP+AVG ++CTA+YEAR+FGVR+AM +A
Sbjct: 2 RKIIHIDMDAFFASVEQRDRPELRGKPIAVGYDGARGVVCTASYEARKFGVRSAMSMQLA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
++LC ELI V ++ Y S +F Y SLDEA+LD+T ++GIS +
Sbjct: 62 KRLCRELIVVEGNYQHYREVSGQLHGIFHDYTDIIEPLSLDEAFLDVT--INKKGISLAV 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+E++ + +E GLT SAG++ N+LLAK+ SD KP+G + D+ M F++ LP+
Sbjct: 120 DIAKEIKQRIKDELGLTASAGISYNKLLAKIASDYRKPDGLCTIHPDK--AMNFVAKLPV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP 338
+ G+G T + + N + L+ SL L VF S F+ + G+
Sbjct: 178 EDLWGVGPKTARRMHRMGIFNALQ--LRACSLEHLKMVFGKSGPAFY-NYARGIDERPVV 234
Query: 339 QARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LSADMQKEGLRGRTLTLKLKTASF 395
R RKS+ E+TF ED +L L E+ + L+ ++K G+TLTLK+K A F
Sbjct: 235 VERTRKSVGCEQTF--LEDISLPSALLIELYHLVLELTTRIEKGNFEGKTLTLKIKYADF 292
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGLRVTQ-FNEDKVRAP 448
+ TR++T +K + + +DIL A LL + ++RL+GL V+ ED AP
Sbjct: 293 KQITRSITGRKLLKTKDDILPLAKRLLHLVHYDNAHAIRLMGLSVSNPSGEDGDAAP 349
>gi|329119433|ref|ZP_08248118.1| DNA-directed DNA polymerase IV [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464366|gb|EGF10666.1| DNA-directed DNA polymerase IV [Neisseria bacilliformis ATCC
BAA-1200]
Length = 358
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 131/357 (36%), Positives = 193/357 (54%), Gaps = 28/357 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P L+G+P+ V G S++C A+YEARRFG+ +AM A
Sbjct: 4 RKIIHIDMDAFYASVELRERPELRGQPLVVAWEGARSVVCAASYEARRFGLHSAMSAAAA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
R+ CP+ +FVP F Y S +F ++ SLDEAYLD+T + +G +
Sbjct: 64 RRRCPQAVFVPPQFPLYRQVSQQIHGIFRRHTDLIEPLSLDEAYLDVTRNKQNHPYAG-D 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA +R + E GLT SAG+APN+ LAK+ SD +KP+GQF LP + + F+++LP+
Sbjct: 123 IARLIRADILAETGLTASAGIAPNKFLAKIASDWHKPDGQFSLPPQK--IEAFLAALPLG 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVG-----LGLGS 334
KI G+GKVT + + G+ T ++ +++G L A+ F G L G
Sbjct: 181 KIPGVGKVTLQKMHRL-GLKTAGDLRRMERGEL---------ANLFGKWGYRLYDLARGI 230
Query: 335 TNTP--QARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
N P R R IS+E T AL+ + L +A L A ++ R R++TLKLKT
Sbjct: 231 DNRPVKAERERVQISTEITLPEDLPLALILQHLPHLAADLWAQAARKQCRARSVTLKLKT 290
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRVTQFNEDKVR 446
A F TR++T + + +L A L P + RLIGL V+ + ++
Sbjct: 291 ARFRTLTRSLTYSSPLPDTTALLAAARELAARIPPDTEGGYRLIGLGVSHLEQPGIQ 347
>gi|429743284|ref|ZP_19276854.1| putative DNA polymerase IV [Neisseria sp. oral taxon 020 str.
F0370]
gi|429165943|gb|EKY07963.1| putative DNA polymerase IV [Neisseria sp. oral taxon 020 str.
F0370]
Length = 360
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 179/313 (57%), Gaps = 29/313 (9%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P L+G P+ V G S++C A+YEAR++G+ +AMP A
Sbjct: 4 RKIIHIDMDAFYASVELRERPELRGLPVVVAWEGARSVVCAASYEARKYGLHSAMPAVTA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
R+LCP+ +FV F Y S +F ++ SLDEAYLD+T + +G +
Sbjct: 64 RRLCPQAVFVAPRFPLYRQVSQQIHGIFRRHTDLIEPLSLDEAYLDVTRNKQNLPYAG-D 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA +R + E GLT SAG+A N+ LAK+ SD NKP+GQF LP + F+++LP+
Sbjct: 123 IARLIRADIRSETGLTASAGIAANKFLAKIASDWNKPDGQFSLPPQKSE--AFLATLPLG 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVG-----LGLGS 334
KI G+GKVT + + G++T ++ +G L A+ F G L G+
Sbjct: 181 KIPGVGKVTLQKMHRL-GLSTAGDLRRFSRGEL---------ANLFGKWGYRLYDLARGT 230
Query: 335 TNTP--QARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 390
N P R R IS+E T + + ALL L ++AE L A +++ R R++TLKL
Sbjct: 231 DNRPVKPDRERLQISTETTLARDLPLSAALLC--LPQLAEELWAQAERKKCRARSVTLKL 288
Query: 391 KTASFEVRTRAVT 403
KTASF + TR++T
Sbjct: 289 KTASFRILTRSLT 301
>gi|258546266|ref|ZP_05706500.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
gi|258518488|gb|EEV87347.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
Length = 353
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 182/347 (52%), Gaps = 14/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMDAFYA+VE +P +GKP+ V + ++ A+YEARR+G+ +AM
Sbjct: 4 RKIIHIDMDAFYASVEQRDHPEWRGKPLIVARAAEERGVVAAASYEARRYGIHSAMSTHR 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++ CP+LI P F Y S R + SLDEAYLD+++ E G S
Sbjct: 64 AQQRCPQLILAPPRFAVYRAVSLQIRALMLAITDAVEPLSLDEAYLDVSDSPHENG-SAT 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IAE L + GLT SAGV+ N++LAK+ SD+NKPNG V+ + A F++SL I
Sbjct: 123 RIAERLSAEILAATGLTASAGVSYNKMLAKIASDLNKPNGIAVITPAQGA--DFVASLAI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
+ GIGK T + GI T ++ L + +L H DF+ + G+
Sbjct: 181 ERFHGIGKATAAHMH-ALGIQTGADLRRLSRETLRHEFGKHG--DFYYDMARGIDLRPVE 237
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
AR RKSI SE TF+ ED A LY+ L AD+Q+ L+ TLTLKLK + F
Sbjct: 238 AARERKSIGSETTFARDIEDHAALYQALLAQNREAFADVQRRHLQPHTLTLKLKYSDFSQ 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNED 443
TR TL + ED + LL+ P +RL+G+ + ED
Sbjct: 298 TTRRQTLSTPFAREEDAHYWIARLLQEIAPARPVRLVGITYSGLRED 344
>gi|254229504|ref|ZP_04922918.1| ImpB/MucB/SamB family [Vibrio sp. Ex25]
gi|262393489|ref|YP_003285343.1| DNA polymerase IV [Vibrio sp. Ex25]
gi|151937969|gb|EDN56813.1| ImpB/MucB/SamB family [Vibrio sp. Ex25]
gi|262337083|gb|ACY50878.1| DNA polymerase IV [Vibrio sp. Ex25]
Length = 356
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 143/370 (38%), Positives = 193/370 (52%), Gaps = 36/370 (9%)
Query: 99 ATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRA 154
A DL R +HVDMD FYAAVE NPS +G +AVG +I T NYEAR++GVR+
Sbjct: 2 AMSDLIRKIIHVDMDCFYAAVEMRDNPSYRGIALAVGGHEKQRGVISTCNYEARKYGVRS 61
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A +LCP L+ VP Y S R +F +Y P SLDEAYLD+T+
Sbjct: 62 AMSTARALQLCPHLLVVPGRMHVYKQVSQQIRAIFERYTPIIEPLSLDEAYLDVTDSTAC 121
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 274
RG S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P D+ V
Sbjct: 122 RG-SATLIAESIRRDIWNELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPPDK--VQEV 178
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLG 333
I +LP+ I G+GKV+ L G CE++ L F A + G+
Sbjct: 179 IDTLPLENIPGVGKVSLEKLHQA-GFYRCEDIKNSDYRELLRQFGRQGASLW-QRSHGID 236
Query: 334 STNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSAD--MQKEG 380
+ R RKS+ ERTFS V EDK LY +L + E S D + K+G
Sbjct: 237 NREVVVERERKSVGVERTFSQNISSYDECWQVIEDK--LYPELEKRLERASPDKSIIKQG 294
Query: 381 LRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ 439
+K+K A F++ T + Q + + +L+ +LK + +RL+GL V
Sbjct: 295 -------IKVKFADFQLTTIEHIHPQLELEDFKILLRD---ILKRQNGREIRLLGLNVML 344
Query: 440 FNEDKVRAPS 449
E++ R S
Sbjct: 345 KPENQARQLS 354
>gi|424835122|ref|ZP_18259792.1| DNA polymerase IV [Clostridium sporogenes PA 3679]
gi|365978249|gb|EHN14341.1| DNA polymerase IV [Clostridium sporogenes PA 3679]
Length = 349
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 122/350 (34%), Positives = 193/350 (55%), Gaps = 14/350 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE + N LKGKP+ VG ++ TA+YEAR++GV +AMP F
Sbjct: 1 MDRVIMHVDMDAFFASVEQIDNKKLKGKPVIVGGTGERGVVSTASYEARKYGVHSAMPVF 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
IA+K CP I+VP +Y S+ K+ + P S+DEAYLDI+ + E
Sbjct: 61 IAKKRCPFGIYVPGRHDRYKEVSNNIFKILFQITPIVEPVSIDEAYLDISHIKEE----P 116
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
I++A+ ++ V +E GLT S G++ N+ LAK+ SD NKP+G ++ D + + L
Sbjct: 117 IKVAKHIKKRVKDEIGLTLSVGISYNKFLAKLASDWNKPDGIKIIKEDMIP--RILMPLS 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCA-VFSHSTADFFLSVGLGLGSTNTP 338
I KI GIGK + L ++ GI T E+M + C F + + + G+
Sbjct: 175 INKINGIGKKSVERLNNI-GIYTVEDMHKLSKDFCIEYFGKFGVEIYERIR-GIDYREVK 232
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKSI E T +K + + L + + +S ++ K G+T+T+K+KT++F+
Sbjct: 233 VSRERKSIGKEITLKKDIINKEEMKKYLLDFSNKISTNLYKRNSAGKTITVKIKTSNFKT 292
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 446
TR+ T+ Y ++I A +L +RLIGL V+ E+K++
Sbjct: 293 HTRSKTVNNYTRDKDEIYSIACDILDNINFKEPIRLIGLTVSNLGENKIK 342
>gi|378827935|ref|YP_005190667.1| DNA polymerase IV [Sinorhizobium fredii HH103]
gi|365180987|emb|CCE97842.1| DNA polymerase IV [Sinorhizobium fredii HH103]
Length = 371
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 186/343 (54%), Gaps = 12/343 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+G P+AVG ++ A+YEAR+FGV +AMP A
Sbjct: 19 RKIVHVDMDAFYASVEQRDNPELRGLPVAVGYPAARGVVAAASYEARKFGVHSAMPSVTA 78
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFV F Y S R +F +Y P SLDEAYLD+TE + I+ E
Sbjct: 79 KRKCPDLIFVKPRFDVYRAVSLQIRSIFAEYTPMIEPLSLDEAYLDVTENLKGIEIA-TE 137
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F+ ++P+
Sbjct: 138 IAAEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGQA---FVEAVPV 194
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T + + GI T ++ K + +F + G+ +
Sbjct: 195 KKFHGVGPATAEKMHRL-GIETGADLKGKTQEFLVEHFGKSGPYFYGIARGIDNREVKPD 253
Query: 341 RFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TFS R+ L + E + + G+ +T+TLK+K A F T
Sbjct: 254 RVRKSVGAEDTFSEDIHSFEPAREGLQPLIEKVWDYCEANGIGAKTVTLKVKYADFSQIT 313
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
R+ T+ + + D+ + +LL P +RL+G+ ++
Sbjct: 314 RSKTVAAPLQTIGDLEEVVGLLLAPIFPPRRGIRLLGVTLSSL 356
>gi|399924340|ref|ZP_10781698.1| DNA polymerase IV [Peptoniphilus rhinitidis 1-13]
Length = 348
Score = 195 bits (496), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 124/347 (35%), Positives = 189/347 (54%), Gaps = 14/347 (4%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKL 164
+HVD+DAFYA+VE L + SL GKP+ VG S ++ TANY AR++G+ +AMP ++A+ L
Sbjct: 5 IHVDIDAFYASVEELDDKSLIGKPVVVGGKSNHGIVTTANYVARKYGIHSAMPMYMAKNL 64
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 224
C LI +P +Y S V Y S+DE+YLDI + + I
Sbjct: 65 CDHLIIMPMRRDRYLEKSREVFDVLKTYTKVIEKVSIDESYLDIEGLGYDENI-----VY 119
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 284
E++ VY GL S G++ N+ LAK+ SD NKP G ++ + + F L IRK+
Sbjct: 120 EIQKDVYNRTGLNVSIGMSYNKFLAKLASDWNKPKGIMIIKKRDIPEILF--PLDIRKVH 177
Query: 285 GIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR 343
GIGK +E LR++ GINT EE+ L ++F S + + + G+ + R
Sbjct: 178 GIGKKSEKKLRNI-GINTVEELYSLSYDFLVSMFKKSGEEIYNRIR-GIDNRKVTPNTVR 235
Query: 344 KSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVT 403
KS+ +E TF VT + L L E + +S D+ + + G TLTLK+K F+V+TR+ T
Sbjct: 236 KSLGTETTFEVTSKRDELIGYLKEFSHEISEDLIVKEISGYTLTLKMKNEDFKVKTRSKT 295
Query: 404 LQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVRAPS 449
+K I + +DI K + + +A LRLIG+ ++ + +R S
Sbjct: 296 YEKAIYAEDDIYKKSLEIFDEAYGGEKLRLIGITISNLADLSIRQLS 342
>gi|389855914|ref|YP_006358157.1| DNA polymerase IV [Streptococcus suis ST1]
gi|353739632|gb|AER20639.1| DNA polymerase IV [Streptococcus suis ST1]
Length = 355
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 127/360 (35%), Positives = 198/360 (55%), Gaps = 34/360 (9%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
DLSR +HVDMDAF+AA+E NP LKGKP+ +G ++ T NYEAR FG+ +
Sbjct: 9 DLSRKIIHVDMDAFFAAIEVRDNPELKGKPVIIGADPRLSGGRGVVSTCNYEARAFGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ + KY R++F +Y S+DEAYLD+TE +
Sbjct: 69 AMSSKEAYERCPQAIFISGHYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
G+ S ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP+G +LP + M V+
Sbjct: 127 LGLSSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEEAMGVL 186
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLG 331
+SLPI K G+GK T L D+ G+ T +++L + L F D +
Sbjct: 187 ---ASLPIEKFHGVGKKTVERLHDM-GVYTGQDLLDVPEMVLIDTFGRFGFDLYRK---A 239
Query: 332 LGSTNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEMLSADMQKEGLRG 383
G +N+P R RKSI ERT+ + LLYR +L + + ++A +++ +G
Sbjct: 240 RGISNSPVKVDRVRKSIGKERTY-----RKLLYREEDVLKELTSLCQRVAASLERNEKKG 294
Query: 384 RTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 441
RT+ LK++ F T+ +L +Y + I K L++ ++ +RL+G+ VT F
Sbjct: 295 RTIVLKVRYGDFSTLTKRHSLDEYTDQLDIIEKVVRQLIEEIGQVEKGIRLLGVTVTNFQ 354
>gi|392966693|ref|ZP_10332112.1| DNA-directed DNA polymerase [Fibrisoma limi BUZ 3]
gi|387845757|emb|CCH54158.1| DNA-directed DNA polymerase [Fibrisoma limi BUZ 3]
Length = 374
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 130/360 (36%), Positives = 197/360 (54%), Gaps = 16/360 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE NP L+GKP+AVG ++ A+YEAR++GVR+AM +A
Sbjct: 21 RKIIHVDMDAFFASVEQRDNPDLRGKPVAVGGSRERGVVAAASYEARQYGVRSAMSSLMA 80
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ CP LIFV F Y S R +F Y SLDEAYLD+TE ++ +
Sbjct: 81 IRKCPHLIFVKPRFEVYKTVSAQIRTIFADYTDLIEPLSLDEAYLDVTERA-SADLTATQ 139
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA+E++ + +E LT SAGV+ N+ LAK+ SD KP+G FV+ P+ +A F+ L +
Sbjct: 140 IAQEIKERIRQETQLTASAGVSYNKFLAKLASDYRKPDGLFVIKPHQGLA---FVEQLNV 196
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+ G+G+VT + + GI T ++ Q+ + S+ +
Sbjct: 197 GQFHGVGRVTAEKMNQL-GIFTGLDLRQQTEAFLTRHFGKVGHHYYSIARAIDDRPVTAN 255
Query: 341 RFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKS+ SE TFS +TE+ LL L + + + A ++ G+ GRT+TLK+K A F+
Sbjct: 256 RVRKSVGSENTFSHDLTEESELL-TGLEPLTDDVWAYCERTGVYGRTVTLKVKYADFQQI 314
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPSDPTQKTL 456
TR+ TL ++S + + + LL LP+ +RL+G+ ++ N D V S Q L
Sbjct: 315 TRSRTLPTTVASRNILQQITADLLTGLLPLPKPVRLLGVSIS--NLDTVTTTSANGQLAL 372
>gi|227539640|ref|ZP_03969689.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
gi|227240553|gb|EEI90568.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
Length = 350
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 137/360 (38%), Positives = 202/360 (56%), Gaps = 20/360 (5%)
Query: 110 VDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFIARKLC 165
+DMDAFYA+VE P L+GKP+AVG ++ TA+YEAR++GV++AM A +LC
Sbjct: 1 MDMDAFYASVEQRDFPELRGKPLAVGGSPDGRGVVATASYEARKYGVKSAMSSRQALQLC 60
Query: 166 PELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGIEIAE 224
P+LIF F Y S R++F +Y SLDEAYLD+TE ++GI S I+IA
Sbjct: 61 PDLIFTRPRFDIYKEVSQQIRQIFLRYTDLIEPLSLDEAYLDVTE--DKQGIGSAIDIAR 118
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSLPIRKI 283
+++ + EE LT SAGV+ N+ +AK+ SDINKP+G F+ P+ V+ F+ LPI K
Sbjct: 119 QIKQEIQEELNLTVSAGVSVNKFVAKIASDINKPDGLTFIGPS---KVVAFMEHLPIEKF 175
Query: 284 GGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR 343
G+GKVT ++ + GI +M Q T +FF ++ G+ + R
Sbjct: 176 FGVGKVTASKMKKL-GIYRGADMKQWTQEALTRHFGKTGEFFYNIVRGIDNRPVQPNRQT 234
Query: 344 KSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAV 402
KSIS E TF+ D +L L E++ L + + L G+T+TLK+K + F TR++
Sbjct: 235 KSISVEDTFAQDIADIQVLEDILKELSVRLVKRLNAKELAGKTVTLKVKFSDFSQATRSM 294
Query: 403 TLQKYISSSEDILKHASVLL-KAELP-VSLRLIGLRVTQF-NEDKVRAPSDPTQKTLTNF 459
T ++ E + + AS LL K L + +RL+G+ V+ F ED P + LT F
Sbjct: 295 TALDVVTGEEVLYQIASELLNKVSLTEMKVRLLGVGVSNFTGED----PDRQINRQLTLF 350
>gi|417548493|ref|ZP_12199574.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-18]
gi|417566604|ref|ZP_12217476.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC143]
gi|395552276|gb|EJG18284.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC143]
gi|400388792|gb|EJP51864.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-18]
Length = 351
Score = 195 bits (495), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 128/346 (36%), Positives = 193/346 (55%), Gaps = 16/346 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P L+ P+ + + ++I A+Y AR FG+R+AM A
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLRHLPVVISSHHPRAVIAAASYPAREFGLRSAMSMSQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S E
Sbjct: 62 RKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A +FI LP++
Sbjct: 121 VAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--SFIQGLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP-Q 339
KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P Q
Sbjct: 179 KIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPVQ 234
Query: 340 A-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
A R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 235 AERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQTL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 441
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 295 QHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 340
>gi|338215016|ref|YP_004646508.1| DNA polymerase IV [Runella slithyformis DSM 19594]
gi|336309135|gb|AEI52232.1| DNA polymerase IV [Runella slithyformis DSM 19594]
Length = 355
Score = 195 bits (495), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 134/372 (36%), Positives = 194/372 (52%), Gaps = 32/372 (8%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
++R +H+DMDAFYA+VE +PSL+GKP+AVG S ++ A+YEAR++GVR+AM
Sbjct: 1 MNRKIIHIDMDAFYASVEQRDDPSLRGKPVAVGGSSDRGVVAAASYEARKYGVRSAMSSK 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+A + CP LIFV F Y Y S+ R +F ++ P SLDEAYLD+TE ++ S
Sbjct: 61 VAARKCPALIFVKPRFEVYKYVSEQIRGIFAEFTPLIEPLSLDEAYLDVTENLKKMR-SA 119
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IA+E++ + E LT SAGV+ N+ LAK+ SD KPNG +V+ D F+++L
Sbjct: 120 TLIAQEIKQRIVETTQLTASAGVSYNKFLAKLASDFRKPNGIYVIGPDEGE--AFVANLT 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+ K GIGKVT + + GI T ++ K ++ ++ G+
Sbjct: 178 VNKFHGIGKVTAEKMNQL-GIQTGMDLKSKTEFFLRTHFGKMGSYYYNIARGIDQRPVEA 236
Query: 340 ARFRKSISSERTFSVTEDKALLYRKLAEIAEM------LSADMQKEGLR----GRTLTLK 389
R RKS+ SE TF R L +AEM L D+ K R GRT TLK
Sbjct: 237 DRIRKSVGSENTFD---------RDLETLAEMEGGLLPLIEDVWKWCTRTQIYGRTATLK 287
Query: 390 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRA 447
+K F++ TR+ + I K LL P +RL+G+ + +V
Sbjct: 288 IKFNDFQMITRSQSAFLPIREKALFEKIIFELLNKNFPTDKPVRLLGVSIHNL---EVTH 344
Query: 448 PSDPTQKTLTNF 459
P++ Q TL NF
Sbjct: 345 PTEGQQLTL-NF 355
>gi|169797618|ref|YP_001715411.1| DNA polymerase IV [Acinetobacter baumannii AYE]
gi|184156526|ref|YP_001844865.1| DNA polymerase IV [Acinetobacter baumannii ACICU]
gi|215484969|ref|YP_002327210.1| DNA polymerase IV(Pol IV) [Acinetobacter baumannii AB307-0294]
gi|239502137|ref|ZP_04661447.1| DNA polymerase IV(Pol IV) [Acinetobacter baumannii AB900]
gi|260556426|ref|ZP_05828645.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|301510902|ref|ZP_07236139.1| DNA polymerase IV [Acinetobacter baumannii AB058]
gi|332851008|ref|ZP_08433143.1| DNA polymerase IV [Acinetobacter baumannii 6013150]
gi|332865620|ref|ZP_08436453.1| DNA polymerase IV [Acinetobacter baumannii 6013113]
gi|332875005|ref|ZP_08442852.1| DNA polymerase IV [Acinetobacter baumannii 6014059]
gi|384130174|ref|YP_005512786.1| DNA polymerase IV [Acinetobacter baumannii 1656-2]
gi|403673120|ref|ZP_10935433.1| DNA polymerase IV [Acinetobacter sp. NCTC 10304]
gi|417554988|ref|ZP_12206057.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-81]
gi|417563117|ref|ZP_12213996.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC137]
gi|417577028|ref|ZP_12227873.1| DNA polymerase IV [Acinetobacter baumannii Naval-17]
gi|417870856|ref|ZP_12515804.1| DNA polymerase IV [Acinetobacter baumannii ABNIH1]
gi|417880013|ref|ZP_12524558.1| DNA polymerase IV [Acinetobacter baumannii ABNIH3]
gi|417884379|ref|ZP_12528580.1| DNA polymerase IV [Acinetobacter baumannii ABNIH4]
gi|421201172|ref|ZP_15658331.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC109]
gi|421456702|ref|ZP_15906040.1| putative DNA polymerase IV [Acinetobacter baumannii IS-123]
gi|421623016|ref|ZP_16063906.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC074]
gi|421627446|ref|ZP_16068256.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC098]
gi|421629411|ref|ZP_16070144.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC180]
gi|421634758|ref|ZP_16075369.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-13]
gi|421644682|ref|ZP_16085159.1| putative DNA polymerase IV [Acinetobacter baumannii IS-235]
gi|421647102|ref|ZP_16087533.1| putative DNA polymerase IV [Acinetobacter baumannii IS-251]
gi|421649774|ref|ZP_16090157.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC0162]
gi|421658940|ref|ZP_16099167.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-83]
gi|421662434|ref|ZP_16102599.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC110]
gi|421673404|ref|ZP_16113344.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC065]
gi|421680541|ref|ZP_16120395.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC111]
gi|421687638|ref|ZP_16127358.1| putative DNA polymerase IV [Acinetobacter baumannii IS-143]
gi|421689691|ref|ZP_16129365.1| putative DNA polymerase IV [Acinetobacter baumannii IS-116]
gi|421695286|ref|ZP_16134895.1| putative DNA polymerase IV [Acinetobacter baumannii WC-692]
gi|421699297|ref|ZP_16138830.1| putative DNA polymerase IV [Acinetobacter baumannii IS-58]
gi|421791630|ref|ZP_16227802.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-2]
gi|421796731|ref|ZP_16232787.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-21]
gi|421802523|ref|ZP_16238472.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-694]
gi|421806537|ref|ZP_16242400.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC035]
gi|424061480|ref|ZP_17798969.1| DNA polymerase IV [Acinetobacter baumannii Ab33333]
gi|424064969|ref|ZP_17802453.1| DNA polymerase IV [Acinetobacter baumannii Ab44444]
gi|425749660|ref|ZP_18867631.1| putative DNA polymerase IV [Acinetobacter baumannii WC-348]
gi|445397472|ref|ZP_21429297.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-57]
gi|445462986|ref|ZP_21449183.1| DNA polymerase IV [Acinetobacter baumannii OIFC338]
gi|445480792|ref|ZP_21455703.1| DNA polymerase IV [Acinetobacter baumannii Naval-78]
gi|445487709|ref|ZP_21457924.1| putative DNA polymerase IV [Acinetobacter baumannii AA-014]
gi|169150545|emb|CAM88453.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii AYE]
gi|183208120|gb|ACC55518.1| Nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii
ACICU]
gi|193076069|gb|ABO10667.2| DNA polymerase IV [Acinetobacter baumannii ATCC 17978]
gi|213988136|gb|ACJ58435.1| DNA polymerase IV(Pol IV) [Acinetobacter baumannii AB307-0294]
gi|260410481|gb|EEX03780.1| nucleotidyltransferase/DNA polymerase [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|322506394|gb|ADX01848.1| DNA polymerase IV [Acinetobacter baumannii 1656-2]
gi|332730291|gb|EGJ61615.1| DNA polymerase IV [Acinetobacter baumannii 6013150]
gi|332735209|gb|EGJ66287.1| DNA polymerase IV [Acinetobacter baumannii 6013113]
gi|332736815|gb|EGJ67795.1| DNA polymerase IV [Acinetobacter baumannii 6014059]
gi|342226754|gb|EGT91714.1| DNA polymerase IV [Acinetobacter baumannii ABNIH1]
gi|342226802|gb|EGT91760.1| DNA polymerase IV [Acinetobacter baumannii ABNIH3]
gi|342234417|gb|EGT99076.1| DNA polymerase IV [Acinetobacter baumannii ABNIH4]
gi|395525699|gb|EJG13788.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC137]
gi|395563204|gb|EJG24857.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC109]
gi|395570249|gb|EJG30911.1| DNA polymerase IV [Acinetobacter baumannii Naval-17]
gi|400210406|gb|EJO41375.1| putative DNA polymerase IV [Acinetobacter baumannii IS-123]
gi|400391405|gb|EJP58452.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-81]
gi|404564254|gb|EKA69436.1| putative DNA polymerase IV [Acinetobacter baumannii IS-143]
gi|404565597|gb|EKA70761.1| putative DNA polymerase IV [Acinetobacter baumannii IS-116]
gi|404566300|gb|EKA71456.1| putative DNA polymerase IV [Acinetobacter baumannii WC-692]
gi|404571691|gb|EKA76742.1| putative DNA polymerase IV [Acinetobacter baumannii IS-58]
gi|404666357|gb|EKB34304.1| DNA polymerase IV [Acinetobacter baumannii Ab33333]
gi|404673052|gb|EKB40856.1| DNA polymerase IV [Acinetobacter baumannii Ab44444]
gi|408504675|gb|EKK06416.1| putative DNA polymerase IV [Acinetobacter baumannii IS-235]
gi|408512515|gb|EKK14156.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC0162]
gi|408516896|gb|EKK18455.1| putative DNA polymerase IV [Acinetobacter baumannii IS-251]
gi|408693128|gb|EKL38740.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC098]
gi|408693899|gb|EKL39494.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC074]
gi|408701548|gb|EKL46975.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC180]
gi|408703781|gb|EKL49163.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-13]
gi|408709114|gb|EKL54373.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-83]
gi|408714774|gb|EKL59907.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC110]
gi|410386265|gb|EKP38738.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC065]
gi|410389456|gb|EKP41870.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC111]
gi|410398429|gb|EKP50648.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-21]
gi|410402559|gb|EKP54674.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-2]
gi|410414716|gb|EKP66512.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-694]
gi|410417717|gb|EKP69486.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC035]
gi|425488001|gb|EKU54342.1| putative DNA polymerase IV [Acinetobacter baumannii WC-348]
gi|444768127|gb|ELW92346.1| putative DNA polymerase IV [Acinetobacter baumannii AA-014]
gi|444771115|gb|ELW95248.1| DNA polymerase IV [Acinetobacter baumannii Naval-78]
gi|444780511|gb|ELX04458.1| DNA polymerase IV [Acinetobacter baumannii OIFC338]
gi|444784058|gb|ELX07889.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-57]
gi|452954105|gb|EME59509.1| DNA polymerase IV [Acinetobacter baumannii MSP4-16]
Length = 351
Score = 195 bits (495), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 128/346 (36%), Positives = 193/346 (55%), Gaps = 16/346 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P L+ P+ + + ++I A+Y AR FG+R+AM A
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLRHLPVVISSHHPRAVIAAASYPAREFGLRSAMSMSQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S E
Sbjct: 62 RKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A +FI LP++
Sbjct: 121 VAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--SFIQDLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP-Q 339
KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P Q
Sbjct: 179 KIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPVQ 234
Query: 340 A-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
A R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 235 AERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQTL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 441
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 295 QHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 340
>gi|407716219|ref|YP_006837499.1| DNA-directed DNA polymerase protein [Cycloclasticus sp. P1]
gi|407256555|gb|AFT66996.1| DNA-directed DNA polymerase protein [Cycloclasticus sp. P1]
Length = 365
Score = 195 bits (495), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 174/310 (56%), Gaps = 11/310 (3%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPG 158
L R +H+DMDAF+A+VE P L+GKP+ VG + ++ +YEAR+FG+ +AMP
Sbjct: 4 LQRKIIHIDMDAFFASVEQRDQPELQGKPVIVGGQPNSRGVVAACSYEARQFGIHSAMPC 63
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS 218
A +LCP+ IF+P F Y S + ++F +Y + SLDEAYLD++ +G S
Sbjct: 64 SRAYRLCPQAIFIPPRFDAYKAVSKIIHEIFWRYATDVEPLSLDEAYLDVSHSSEYKG-S 122
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISS 277
IAE ++ + E L SAGV+ N+ LAK+ SD++KP+G +V+ P A FI++
Sbjct: 123 ATRIAEAIKHDIKAETQLIASAGVSYNKFLAKIASDMDKPDGLYVIRPEQGEA---FIAT 179
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LPI G+G TE I + GI T ++ K S+ +A++F + G+
Sbjct: 180 LPIGSFYGVGPATE-IKMNKLGIKTGRDLRSKSSVELTKHFGKSAEYFFQIARGIDHRPV 238
Query: 338 PQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ E TF DK LL KL ++A+ + ++ + +T+T+K+K A+F+
Sbjct: 239 RSTRIRKSLGKETTFKTDVYDKTLLLEKLNQLAQKVFENLAAQQFMAKTITVKIKYANFK 298
Query: 397 VRTRAVTLQK 406
TR+ + K
Sbjct: 299 SVTRSYSSTK 308
>gi|315497515|ref|YP_004086319.1| DNA-directed DNA polymerase [Asticcacaulis excentricus CB 48]
gi|315415527|gb|ADU12168.1| DNA-directed DNA polymerase [Asticcacaulis excentricus CB 48]
Length = 362
Score = 195 bits (495), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 130/364 (35%), Positives = 200/364 (54%), Gaps = 23/364 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM--SMICTANYEARRFGVRAAMPGFIAR 162
R +HVDMDAFYA+VE NP L+GKP+AVG + ++ A+YEAR++G+R+AMP AR
Sbjct: 10 RKIIHVDMDAFYASVEQRDNPELRGKPVAVGGLERGVVAAASYEARKYGIRSAMPSVTAR 69
Query: 163 KLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGIE 221
+ CPELIFV F Y S R +F Y SLDEAYLD+T + I S
Sbjct: 70 RKCPELIFVKPRFDAYKAVSKQIRDIFEDYTELVEPLSLDEAYLDVTH--NHKAIASATL 127
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+E+R + GLT SAGV+ N+ LAK+ SD KP+G +V+ RM F+ +L +
Sbjct: 128 IAQEIRARIKLATGLTASAGVSYNKFLAKMASDYRKPDGLYVI-TPRMG-PEFVETLMVG 185
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+ GIG TE + + GI T ++ Q + L F S D++ ++ G+
Sbjct: 186 RFHGIGPATEEKM-NRLGILTGADLKAQDLAFLQKHFGVS-GDYYYNIARGIDHRRVQPD 243
Query: 341 RFRKSISSERT-----FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKS+ +E T FS+ +A L+ I + + + G RGRT+TLK+K F
Sbjct: 244 RVRKSVGAENTFFQDIFSLEAARA----ALSPIVDKVWRYCDQHGTRGRTVTLKVKYTDF 299
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNEDKVRAPSDPTQ 453
+ TR+ T + + ++ + + LL++ P++ +RL+G+ ++ + +A +P Q
Sbjct: 300 QQITRSHTAAAIVLNKGELARLSGSLLESVFPIAKGIRLLGVTLSSLGGSQAQA--EPQQ 357
Query: 454 KTLT 457
+L
Sbjct: 358 LSLA 361
>gi|445453449|ref|ZP_21445121.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-92]
gi|444753425|gb|ELW78075.1| putative DNA polymerase IV [Acinetobacter baumannii WC-A-92]
Length = 351
Score = 195 bits (495), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 128/346 (36%), Positives = 193/346 (55%), Gaps = 16/346 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P L+ P+ + + ++I A+Y AR FG+R+AM A
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLRHLPVVISSHHPRAVIAAASYPAREFGLRSAMSMSQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S E
Sbjct: 62 RKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A +FI LP++
Sbjct: 121 VAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--SFIQDLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP-Q 339
KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P Q
Sbjct: 179 KIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPVQ 234
Query: 340 A-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
A R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 235 AERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQTL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 441
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 295 QHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 340
>gi|381401525|ref|ZP_09926424.1| DNA polymerase IV [Kingella kingae PYKK081]
gi|380833500|gb|EIC13369.1| DNA polymerase IV [Kingella kingae PYKK081]
Length = 338
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 124/338 (36%), Positives = 185/338 (54%), Gaps = 18/338 (5%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE P L+G P+ V G S+IC A+YEAR+FG+R+AMP A++LCP+
Sbjct: 1 MDAFYASVELREQPHLRGLPVVVAWDGARSVICAASYEARQFGLRSAMPVATAKRLCPQA 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
+FVP F Y S +F +Y SLDEAYLD+T+ ++ + ++A+++R
Sbjct: 61 VFVPPHFDLYRQMSQQIHMIFQRYTDLIEPISLDEAYLDVTQNKQQLPYAS-QVAKQIRA 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPIRKIGGIG 287
+ + GLT SAG+APN+ LAK+ SD KPNGQFV+ P++ + F+ LP+ K+ G+G
Sbjct: 120 EILAQTGLTASAGIAPNKFLAKIASDWRKPNGQFVIQPHE---IEYFLRDLPVGKVWGVG 176
Query: 288 KVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLGLGSTNTPQARFRK 344
K T ++ G T ++ Q A H F + G+ R R
Sbjct: 177 KKTLLKMQQ-HGWQTIGDLRQVSR---AELVHWFGKFGYRLYDLARGVDERPVQAERERL 232
Query: 345 SISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL 404
IS+E T S +K + L +++ L MQ++ ++ TLTLKLK+ F+V TR+ T
Sbjct: 233 QISTEMTLSDNLNKQAISMYLDNLSKDLWQQMQRKKMQAYTLTLKLKSTEFQVFTRSQTY 292
Query: 405 QKYISSSEDILKHASVLLKAELP-VSLRLIGLRVTQFN 441
+ E L A++ L A +P RLIGL V+
Sbjct: 293 SAAL--PEQGLLQAALQLIARMPDGEFRLIGLGVSHLQ 328
>gi|398356293|ref|YP_006529620.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
gi|399995501|ref|YP_006575739.1| hypothetical protein SFHH103_04725 [Sinorhizobium fredii HH103]
gi|365182348|emb|CCE99198.1| hypothetical protein SFHH103_04725 [Sinorhizobium fredii HH103]
gi|390131540|gb|AFL54920.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
Length = 363
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 123/345 (35%), Positives = 185/345 (53%), Gaps = 16/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+G P+AVG ++ A+YEARRFGV +AMP A
Sbjct: 11 RKIVHVDMDAFYASVEQRDNPELRGLPVAVGYPAARGVVAAASYEARRFGVHSAMPSVTA 70
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+L+FV F Y S R +F +Y P SLDEAYLD+TE + I+ E
Sbjct: 71 KRKCPDLVFVRPRFDVYKAVSLQIRAIFAEYTPMIEPLSLDEAYLDVTENLKGMEIA-TE 129
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F+ LPI
Sbjct: 130 IAAEIRAKIKQVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---FVEQLPI 186
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T + + GI T ++ +K + +F + G+ +
Sbjct: 187 KKFHGVGPATAEKMHRL-GIETGADLKEKSFEFLVEHFGKSGPYFYGIARGIDNREIKPN 245
Query: 341 RFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +E TFS ED L + E + + + +T+TLK+K A F
Sbjct: 246 RVRKSVGAEDTFS--EDIHAFEPAREGLQPLMEKVWGYCEANEIGAKTVTLKVKYADFTQ 303
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
TR+ T+ + + ++ + +LL P +RL+G+ ++
Sbjct: 304 ITRSKTVAAPLQTISNLEEVVGLLLAPIFPPRKGIRLLGVSLSSL 348
>gi|281492632|ref|YP_003354612.1| DNA polymerase IV [Lactococcus lactis subsp. lactis KF147]
gi|281376296|gb|ADA65787.1| DNA polymerase IV [Lactococcus lactis subsp. lactis KF147]
Length = 364
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/370 (34%), Positives = 202/370 (54%), Gaps = 31/370 (8%)
Query: 94 ILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYE 146
+L D SR +H+DMDAF+A+VE NPSLKGKP+ + G ++ T +YE
Sbjct: 1 MLTFPLINDTSRKIIHIDMDAFFASVEVRDNPSLKGKPVVIARNPLQTGGRGVVSTCSYE 60
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
AR FG+ +AM A LCP+ IF+ ++ KYT S R++F +Y + AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDDIEAASIDEAYL 120
Query: 207 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 265
D+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P
Sbjct: 121 DVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMP 179
Query: 266 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTAD 323
+ + F++ LP+ K G+GK T L + N + LQK L F +
Sbjct: 180 EE---ALEFLAKLPVEKFHGVGKATVPKLHALGFFNGGD--LQKADPVDLAERFGVYGWE 234
Query: 324 FFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQ 377
+ G+ ++ R RKS+ ERT+ LLY +L++I+ +S ++
Sbjct: 235 LYQKAN-GIHNSKVKNYRERKSVGKERTYG-----KLLYLPDDIKAELSKISGKVSDSLK 288
Query: 378 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELPVSLRLIG 434
L+G + LKL+ + F T+ +L + + S E+I + A + L+ + + +RL+G
Sbjct: 289 SHQLKGSIVILKLRYSDFTTLTKRKSLAEKLESPEEIAEVAQEIFEELEYDESLGVRLLG 348
Query: 435 LRVTQFNEDK 444
+ VT+F K
Sbjct: 349 VTVTEFGVQK 358
>gi|383811006|ref|ZP_09966486.1| ImpB/MucB/SamB family protein [Prevotella sp. oral taxon 306 str.
F0472]
gi|383356411|gb|EID33915.1| ImpB/MucB/SamB family protein [Prevotella sp. oral taxon 306 str.
F0472]
Length = 378
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 131/351 (37%), Positives = 196/351 (55%), Gaps = 22/351 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE NP L+GKP+AVG ++ TA+YEAR +GV +AM A
Sbjct: 19 RKIIHIDMDAFFASVEQRDNPELRGKPIAVGYDGPRGVVSTASYEARPYGVHSAMSIVQA 78
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
++ CP+L+ VP F +Y S ++F +Y SLDEA+LD+TE ++GIS I
Sbjct: 79 KRRCPDLVIVPCHFDRYKEVSRQIHQIFHEYTDLVEPISLDEAFLDVTE--NKKGISMAI 136
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+E++ ++E LT SAGV+ N+LLAK+ SD+ KP+G +++ DR M FI SLPI
Sbjct: 137 DIAKEIKQKIFERTSLTASAGVSYNKLLAKIASDMRKPDGIYIVHPDR--AMDFIGSLPI 194
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K+ G+G T + ++ G+ E++ + + VF + + G+
Sbjct: 195 EKLWGVGPRTAAKMHEM-GVFKGEQLRNISYNHMTQVFG-KMGKIYYNFSRGIDERPVIV 252
Query: 340 ARFRKSISSERTFS---VTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
+R RKS+ E TF E K + LY E+ E L+ + GRTLTLKLK +
Sbjct: 253 SRERKSVGCEHTFREDLHIESKIIIELYHLTLELVERLT----RNQFEGRTLTLKLKWDA 308
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 443
TR++T K + + DIL A +LL S+RL+GL V+ D
Sbjct: 309 TTQITRSLTQGKILRTKHDILPLAKLLLSETGYKKHSIRLMGLSVSSSTTD 359
>gi|257455879|ref|ZP_05621098.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
gi|257446727|gb|EEV21751.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
Length = 351
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 126/346 (36%), Positives = 192/346 (55%), Gaps = 28/346 (8%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +H+DMDAF+A+VE NP L+GKP+ VG ++ A+YE R+FGV +AM +
Sbjct: 2 RKIIHIDMDAFFASVEQRDNPELQGKPLVVGGDPNGRGVVAAASYEIRKFGVHSAMSCYR 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
AR+LCP+ IFV F Y S+ R + +Y SLDEAYLD+T+ E+ S
Sbjct: 62 ARQLCPQAIFVKPRFEVYREVSEQIRAIMHQYTLLVEPLSLDEAYLDVTDSPYEKN-SAT 120
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA +R + + LT SAGV+ N++LAK+ SD+NKPNG V+ ++ + FI++LP+
Sbjct: 121 LIANRIRQQILRQTQLTASAGVSYNKMLAKIASDLNKPNGIAVITPEQG--LDFIANLPV 178
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K GIGK T +L D+ GI T ++ + + DFF + G+ +
Sbjct: 179 KKFHGIGKATVKMLHDM-GIFTGLDLRNTPADVLKQHFGKRGDFFHQIAHGIDNREVKAE 237
Query: 341 RFRKSISSERTF--SVTEDK---ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R KS+ SE TF + +DK A LYR+ ++ + D+QK+ + RT+T+K+K + F
Sbjct: 238 RNHKSVGSETTFVHNTMDDKVIVAALYRENSQAFK----DLQKKQRKARTITIKIKYSDF 293
Query: 396 EVRTRAVTLQKYISSSEDI------LKHASVLLKAELPVSLRLIGL 435
V TR+ ++ + D L H + L LPV RL+G+
Sbjct: 294 SVITRSHSISSHFEQESDAHYWIQWLYHHTPKL---LPV--RLVGV 334
>gi|255034132|ref|YP_003084753.1| DNA-directed DNA polymerase [Dyadobacter fermentans DSM 18053]
gi|254946888|gb|ACT91588.1| DNA-directed DNA polymerase [Dyadobacter fermentans DSM 18053]
Length = 372
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 134/370 (36%), Positives = 210/370 (56%), Gaps = 25/370 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +H+DMDAFYA+VE P +GKP+AVG ++ TA+YEAR+FGVR+AMP
Sbjct: 11 RKIIHIDMDAFYASVEQRDFPEYRGKPLAVGGSPTGRGVVATASYEARKFGVRSAMPSRQ 70
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 219
A +LCP++IFV F Y S R++F +Y SLDEAYLD+TE + GI S
Sbjct: 71 AIQLCPQIIFVHPRFEVYKSVSRSIREIFSRYTDLIEPLSLDEAYLDVTE--DKMGIGSA 128
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 278
+EIA++++ ++ EE LT SAGV+ N+ +AK+ SDI+KPNG F+ P+ + F+ L
Sbjct: 129 MEIAKQIKQAIQEELHLTASAGVSVNKFVAKIASDIHKPNGLTFIGPS---KIERFMDQL 185
Query: 279 PIRKIGGIGKVTEHILR--DVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
P+ K G+GKVT ++ +F + +++ ++ L F T F+ + G+
Sbjct: 186 PVEKFHGVGKVTADKMKGMQLFTGSDLKKLTEEE--LVNHFG-KTGHFYYRIVRGIDDRE 242
Query: 337 TPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 393
R KS+ +E TF+ T D+ + ++L I ++ ++ + L+GRT+TLK+K +
Sbjct: 243 VQTHRETKSLGAEDTFTYDLTTPDE--MNKELDRIGVTVANRLETKKLKGRTVTLKVKFS 300
Query: 394 SFEVRTRAVTLQKYISSSEDILKHASVLL-KAELP-VSLRLIGLRVTQFNEDKV--RAPS 449
F TR + + + I A LL K +L ++RL+G+ ++ F+E +V R
Sbjct: 301 DFTQITRNHSFAHPVGDLDTITDTAKQLLEKLDLEGKAVRLLGISLSNFHEPEVKYRKYK 360
Query: 450 DPTQKTLTNF 459
DP Q L F
Sbjct: 361 DPEQLELFPF 370
>gi|187778600|ref|ZP_02995073.1| hypothetical protein CLOSPO_02195 [Clostridium sporogenes ATCC
15579]
gi|187772225|gb|EDU36027.1| ImpB/MucB/SamB family protein [Clostridium sporogenes ATCC 15579]
Length = 349
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 197/356 (55%), Gaps = 26/356 (7%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A+VE + N LKGKP+ VG + ++ TA+YEAR++GV +AMP F
Sbjct: 1 MDRVIMHVDMDAFFASVEQMDNKKLKGKPVIVGGIGERGVVSTASYEARKYGVHSAMPVF 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+A+K CP I+VP +Y S+ K+ K P S+DEAYLDI+ + +E+
Sbjct: 61 MAKKKCPFGIYVPGRHNRYREVSNNIFKILYKVTPIIEPVSIDEAYLDISHI-KEK---P 116
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
I++A+ ++ V +E GLT S G++ N+ LAK+ SD NKP+G ++ D + + LP
Sbjct: 117 IKVAKYIKNRVKDEIGLTLSVGISYNKFLAKLASDWNKPDGIKIINKDMIP--RILMPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-------GL 332
I KI GIGK + L ++ G+ T +M + C ++F G+ G+
Sbjct: 175 INKIHGIGKKSVEKLHNI-GVFTVADMHKLSKDFC-------IEYFGKFGVEIYDRIRGI 226
Query: 333 GSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
+R RKSI E T +K + + L + + +S ++ K G+T+T+K+K
Sbjct: 227 DYREVKVSRERKSIGKEITLKKDIINKEEMKKYLLDFSNKISTNLYKRNSAGKTVTVKIK 286
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVR 446
T++F+ TR+ T+ Y ++I A +L +RLIGL V+ E+K++
Sbjct: 287 TSNFKTHTRSKTVNDYTRDKDEIYSIACDILDNINFKEPIRLIGLTVSNLGENKIK 342
>gi|299117623|emb|CBN75465.1| hypothetical protein Esi_0099_0091 [Ectocarpus siliculosus]
Length = 713
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 130/197 (65%), Gaps = 1/197 (0%)
Query: 24 VYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVI 83
V++N KAGM VDKE+V +++YEMSK S YF+ + ++ + QK+ M+ + L +
Sbjct: 3 VFSNNKAGMGSVDKERVNRIIYEMSKNSSYFKQAKLQDDKLDQKVAEMKVKLKALGTVRK 62
Query: 84 SHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA 143
+ + ADK ELEA R L + +DMD FYAAVE P L KP+AVG SMI T
Sbjct: 63 AQRTRQADKIATELEAQRQLDEVCMVIDMDMFYAAVEVRDRPELADKPVAVGGESMISTT 122
Query: 144 NYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDE 203
NY+AR GVR+AMPGFI RKLCPEL+FV D+ KYT ++ R++F +YDP A SLDE
Sbjct: 123 NYQARLKGVRSAMPGFIGRKLCPELVFVKPDYEKYTVVAEQIREIFREYDPRMRAYSLDE 182
Query: 204 AYLDITEVCRER-GISG 219
AYL++T+V ER G+ G
Sbjct: 183 AYLNVTKVLTERLGLDG 199
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 154/278 (55%), Gaps = 22/278 (7%)
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+AEE+R + E LT S G+ PN +LAK+ SD NKP+GQ + DR V+ F+ LP+R
Sbjct: 283 LAEEIRGRIREATKLTASVGIGPNFMLAKIASDWNKPDGQMCIGGDRAEVLRFLHDLPVR 342
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN----T 337
KIGG+GKV E LR+ G+ TC ++ ++ + V + T+ + + LG+ S + T
Sbjct: 343 KIGGVGKVQEKCLREALGVVTCGDLFRERGSVIHVMTPHTSRWLIKASLGIASADHDVAT 402
Query: 338 PQARF-----RKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
QA+ RK IS ERTF L K EI + L+A+M +GL +T+ LK+KT
Sbjct: 403 EQAQAVGAVTRKQISKERTFGELSAPRDLLNKCREICDSLAAEMATKGLEAKTVGLKVKT 462
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL-----------PVSLRLIGLRVTQFN 441
F+VRT+ T Y+SS++D+ AS LL+ E+ + LRL+G+R + F
Sbjct: 463 TKFQVRTQDSTGNAYVSSADDLFSAASALLQREIQGAAAASAPGGKLRLRLMGVRASGFR 522
Query: 442 EDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSD 479
+ AP P Q TL F++S A G+ S G+D
Sbjct: 523 -GQAGAPILPGQATLDGFLSSKAAEGGCQGEDES-GND 558
>gi|13488542|ref|NP_109549.1| DNA polymerase IV [Mesorhizobium loti MAFF303099]
gi|22095629|sp|Q98NW7.1|DPO43_RHILO RecName: Full=DNA polymerase IV 3; Short=Pol IV 3
gi|14028296|dbj|BAB54888.1| DNA-damage-inducible protein P [Mesorhizobium loti MAFF303099]
Length = 361
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 137/348 (39%), Positives = 193/348 (55%), Gaps = 19/348 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA---NYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+GKP+AVG + +YEAR FGVR+AMP A
Sbjct: 10 RKIIHVDMDAFYASVEQRDNPELRGKPLAVGGAAARGVVAAASYEARAFGVRSAMPSVTA 69
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CPELIFVP F Y S R VF ++ SLDEAYLD+T+ R S
Sbjct: 70 KRKCPELIFVPPRFDVYRAVSAQIRDVFAEHTDLIEPLSLDEAYLDVTQ-NRLNISSATT 128
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IAE +R + E GLT SAG++ N+ LAK+ SD NKPNGQFV+ P A F+ +LP+
Sbjct: 129 IAEMIRAKILEVTGLTASAGISYNKFLAKMASDQNKPNGQFVITPRHGPA---FVETLPV 185
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K G+G T + + GI T ++ ++ S L F S ++ + +
Sbjct: 186 NKFHGVGPATAAKM-EALGIETGADLKERSLSFLQQHFGKSGL-WYYQIARAIDERAVDP 243
Query: 340 ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRGRTLTLKLKTASFE 396
R RKSI +E TF+ D L LAE+ +++ + +G+RGRT+TLK+K A F+
Sbjct: 244 DRPRKSIGAEDTFAA--DIVDLETSLAELKPLVAKVWGYCEGKGIRGRTVTLKIKFADFQ 301
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 442
TR+ T+ I S D A+ LL + PV +RL+G+ ++ +
Sbjct: 302 QITRSRTVAVPIELS-DFEHLAADLLGSVFPVRKGIRLLGVTLSSLGD 348
>gi|121998646|ref|YP_001003433.1| DNA-directed DNA polymerase [Halorhodospira halophila SL1]
gi|254781922|sp|A1WY69.1|DPO4_HALHL RecName: Full=DNA polymerase IV; Short=Pol IV
gi|121590051|gb|ABM62631.1| DNA-directed DNA polymerase [Halorhodospira halophila SL1]
Length = 356
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 127/351 (36%), Positives = 186/351 (52%), Gaps = 16/351 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +H+DMDAFYA+VE +PSL+G+P+ VG ++ A+YEAR FG+R+A P
Sbjct: 4 RKIIHIDMDAFYASVEQRDDPSLRGQPVVVGGSPEGRGVVAAASYEARAFGIRSAQPAAW 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
AR+ CPE IF+ F +Y S +F + SLDEAYLD+T R RG S
Sbjct: 64 ARRRCPEAIFLRPRFDRYRAISRQIHGIFADFATTIEPLSLDEAYLDVTGSQRFRG-SAT 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+A+ +R + EE GLT SAGV+ N+LLAK+ SD KP+G +V+P + ++++ PI
Sbjct: 123 HMAQAIRRRIREETGLTASAGVSYNKLLAKLASDEGKPDGLYVVPPEDGP--AYVAAQPI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
R++ G+G T L + GI ++L VF + A G+
Sbjct: 181 RRLHGVGPATAARL-ERLGIRQVGDLLDWELADLHVFLGNRAGTLHDAARGIDHRPVRPR 239
Query: 341 RFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKSI +ERTF T D ++++LA + ++ ++ L RT+TLKL+ A FE T
Sbjct: 240 RSRKSIGAERTFGDDTRDLGEIHQRLAPLITKVATRLEHHELVARTVTLKLRYADFESIT 299
Query: 400 RAVTLQKYISSSEDILKHASVLL----KAELPVSL---RLIGLRVTQFNED 443
R V+ ++ + DI LL PV L L GL+ Q +D
Sbjct: 300 RRVSPPGPVAQAADIEALIPALLAETEAGSRPVRLLGVSLSGLQPKQREQD 350
>gi|260551121|ref|ZP_05825325.1| nucleotidyltransferase/DNA polymerase [Acinetobacter sp. RUH2624]
gi|424057302|ref|ZP_17794819.1| DNA polymerase IV [Acinetobacter nosocomialis Ab22222]
gi|260405888|gb|EEW99376.1| nucleotidyltransferase/DNA polymerase [Acinetobacter sp. RUH2624]
gi|407440835|gb|EKF47352.1| DNA polymerase IV [Acinetobacter nosocomialis Ab22222]
Length = 351
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 192/347 (55%), Gaps = 18/347 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LK P+ + + ++I A+Y AR FG+R+AM A
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLKHLPVVISSHHPRAVIAAASYPAREFGLRSAMSMTQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP ++ + +F KY S +F +Y SLDEAYLD+TE ++ S E
Sbjct: 62 RKLCPHVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+ + V +FI LP++
Sbjct: 121 VAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQ--VGSFIQDLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP-Q 339
KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P Q
Sbjct: 179 KIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPVQ 234
Query: 340 A-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
A R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 235 AERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQTL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPVS----LRLIGLRVTQFN 441
+ + + I S +D+++ +LL E+ +S RLIG+ V Q
Sbjct: 295 QHSKSFKNPIHSQQDLIQVLFLLLN-EMHISENFQFRLIGIGVYQLQ 340
>gi|402826938|ref|ZP_10876079.1| DNA-directed DNA polymerase [Sphingomonas sp. LH128]
gi|402259526|gb|EJU09748.1| DNA-directed DNA polymerase [Sphingomonas sp. LH128]
Length = 367
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 125/354 (35%), Positives = 192/354 (54%), Gaps = 30/354 (8%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE +PSL+G+P+AVG + ++ A+YEAR+FGV++A+P A
Sbjct: 7 RKIIHVDMDAFFASVEQRDDPSLRGRPVAVGHGASRGVVAAASYEARKFGVKSALPSVTA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
+ CPELIFVP F Y S +VF +Y SLDEAYLD+T + GI +
Sbjct: 67 LRRCPELIFVPPRFEVYKDVSRQIHEVFARYTDLIQPLSLDEAYLDVT--ANKSGIETAW 124
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
A+ +R ++ +E GLT SAG++ N+ LAK+ SD KPNGQF + D ++ +LP+
Sbjct: 125 RTAKAIRKAILDETGLTASAGISYNKFLAKLASDHRKPNGQFAVTPDMGE--AWVETLPV 182
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+ G+G VT ++ + GI T + K S+A+++ ++ G+
Sbjct: 183 SRFHGVGPVTAEKMKRL-GIETGAHLRAKSLGFLQQNFGSSAEWYFAIARGVDDRPVNPN 241
Query: 341 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSA--DMQKEGLR--------GRTLTLKL 390
R RKS SE TF R L E E+ + M + R GRT+T+K+
Sbjct: 242 RVRKSCGSETTFD---------RDLTEPGEIEAGILRMADDVWRWCEARETFGRTVTVKI 292
Query: 391 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 442
K F+ TR+ + I + E++ + A L++ LP +RL+G+ V+ F E
Sbjct: 293 KYGDFQQITRSRSQPSVIVTQENLQRCAIDLVRTVLPPIKGIRLVGVTVSNFGE 346
>gi|426402348|ref|YP_007021319.1| DNA polymerase IV [Bdellovibrio bacteriovorus str. Tiberius]
gi|425859016|gb|AFY00052.1| DNA polymerase IV [Bdellovibrio bacteriovorus str. Tiberius]
Length = 356
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 151/254 (59%), Gaps = 10/254 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD FYAAVE P LKGKP+ +G T S++CTA+YEAR+FGVR+AMP
Sbjct: 2 RKIIHIDMDCFYAAVEVKFRPELKGKPLGIGGPPNTRSVLCTASYEARKFGVRSAMPSSQ 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A +LCP+L+ +P F Y S R++ ++ SLDEAYLD+T+ C + G S
Sbjct: 62 AVRLCPQLVLIPPHFDLYKAESRKVREILERFTNKIEPLSLDEAYLDVTD-CEQFGGSAT 120
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 279
IA+E+R ++ E LT SAGVAPN+ LAK+ SD KPNGQFV+ P D V F+ LP
Sbjct: 121 LIAQEIRRLIFTELKLTASAGVAPNKFLAKIASDWKKPNGQFVVRPQD---VEGFVKDLP 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+ KI G+GKVT + D+ G+ TC ++ + L + + S A G+
Sbjct: 178 VEKIFGVGKVTAQKMHDL-GLRTCGDIQKYTVLELSHWFGSRAAELYDFSRGIDHREVIT 236
Query: 340 ARFRKSISSERTFS 353
RKS++ E T++
Sbjct: 237 EWERKSLTVEETYN 250
>gi|302346217|ref|YP_003814515.1| DNA polymerase IV [Prevotella melaninogenica ATCC 25845]
gi|302150325|gb|ADK96586.1| DNA polymerase IV [Prevotella melaninogenica ATCC 25845]
Length = 366
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 131/346 (37%), Positives = 194/346 (56%), Gaps = 22/346 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE NP LKGKP+AVG ++ TA+YEAR FGV +AM A
Sbjct: 2 RKIIHIDMDAFFASVEQRDNPELKGKPIAVGFDGPRGVVSTASYEARPFGVHSAMSMAQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
++ CP+LI V + F +Y S VF +Y SLDEA+LD++E ++GI +
Sbjct: 62 KRRCPQLIVVSSHFDRYKEVSRQIHAVFHEYTDLVEPISLDEAFLDVSE--NKKGIELAV 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+E++ ++E LT SAG++ N+LLAK+ SD+ KPNG F + DR + FI LPI
Sbjct: 120 DIAKEIKQKIFERTSLTASAGISYNKLLAKIASDMRKPNGIFTVHPDR--ALDFIGKLPI 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K+ G+G T + + G+ T E++ + L VF + + G+ +
Sbjct: 178 EKLWGVGPKTAERMHSM-GVFTGEQLREISREHLVQVFG-KMGNVYYDFSRGIDNRPVIV 235
Query: 340 ARFRKSISSERTFSV---TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
A RKS+ ERTF E K ++ +L I L ++ + +GRTLTLKLK +
Sbjct: 236 AYERKSVGCERTFLEDLHVESKIII--ELYHITLELVERIKTKDFKGRTLTLKLKWDATT 293
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVT 438
TR++T K + + +DIL A LLK P+ RL+GL V+
Sbjct: 294 QITRSLTQDKILRTKDDILPLAKQLLKDTDYHNRPI--RLMGLSVS 337
>gi|325955402|ref|YP_004239062.1| DNA polymerase IV [Weeksella virosa DSM 16922]
gi|323438020|gb|ADX68484.1| DNA polymerase IV [Weeksella virosa DSM 16922]
Length = 357
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 134/357 (37%), Positives = 205/357 (57%), Gaps = 26/357 (7%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
++R +H+DMDAFYA+VE +P L+GK +AVG+ S ++ TA+YEARR+GVR+AMP
Sbjct: 1 MTRKIIHIDMDAFYASVEQRDHPELRGKCIAVGSSSDRGVVATASYEARRYGVRSAMPSA 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+A++ CP+LIFV +F Y S+ +++F +Y SLDEAYLD+T
Sbjct: 61 VAKRKCPQLIFVKGNFAAYKEVSNQIKEIFAEYTDLIEPLSLDEAYLDVTH-----NHPN 115
Query: 220 IE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
IE IA+E++ + E LT SAGV+ N+ LAK+ SD KP+G FV+ +MA F+
Sbjct: 116 IEYATTIAKEIKQKIKETTKLTASAGVSFNKFLAKIASDYRKPDGLFVI-TPKMA-EKFV 173
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLG 333
LPI K GIGK T +R + I T ++ L+K SL + F S ++ ++ +
Sbjct: 174 EELPIEKFYGIGKQTAQRMR-MMNIETGKD-LKKLSLEKILREFGKSGL-YYYNIARAID 230
Query: 334 STNTPQARFRKSISSERTFSVTE--DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
R RKSI +E TF VT+ D L ++L + E + K GRT+TLK+K
Sbjct: 231 HREVKSHRIRKSIGTENTF-VTDLNDLQELKKRLIPMIEEVWMWTVKNQTYGRTITLKMK 289
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHAS--VLLKAELPV-SLRLIGLRVTQFNEDKV 445
F+V T++ T I ++ + K A+ +L +A P +RLIG+ ++ + +K+
Sbjct: 290 FNDFQVSTKSKTFLFSIQDAQ-LFKQAALELLQEAYTPFRPVRLIGISLSNLDHNKL 345
>gi|167627838|ref|YP_001678338.1| DNA polymerase IV [Francisella philomiragia subsp. philomiragia
ATCC 25017]
gi|226738231|sp|B0TZS5.1|DPO4_FRAP2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|167597839|gb|ABZ87837.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 350
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 195/347 (56%), Gaps = 27/347 (7%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGF 159
+R +H+DMD F+A VE +NPSLK KP AVG + +I T NY AR +GVR+AMP
Sbjct: 4 TRKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGVRSAMPTA 63
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
IA + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E S
Sbjct: 64 IAMQKCPNLILLNTDFAKYKATSAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEYKNSA 122
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ ++ V +F+ LP
Sbjct: 123 TLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQ--VDSFVKDLP 180
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV-----FSHSTADFFLSVGLGLGS 334
++K+ G+GKV++ L+++ + TC + LQ+ SL V F S ++ G+ +
Sbjct: 181 VKKLFGVGKVSQEKLKNM-NVETCLD-LQQLSLATLVDKFGKFGSSLYNY----ARGIDN 234
Query: 335 TNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLKL 390
R RKS+S E T+ ED L KL + L++ M +E + + +K
Sbjct: 235 REVNPVRIRKSVSVENTY--LEDLKTLEACLEKLPNLYNKLTSRMTEEHYKSIIGIVVKF 292
Query: 391 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 437
F +T + K + + +LK+ + L + +RLIG+ +
Sbjct: 293 TDTKFN-KTSLTRVAKTL--DKKVLKNLIIELHQKQNYHIRLIGIGI 336
>gi|213155590|ref|YP_002317635.1| DNA polymerase IV [Acinetobacter baumannii AB0057]
gi|301346037|ref|ZP_07226778.1| DNA polymerase IV [Acinetobacter baumannii AB056]
gi|301596200|ref|ZP_07241208.1| DNA polymerase IV [Acinetobacter baumannii AB059]
gi|417575406|ref|ZP_12226259.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC-5]
gi|421788645|ref|ZP_16224929.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-82]
gi|421799153|ref|ZP_16235155.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC1]
gi|213054750|gb|ACJ39652.1| DNA polymerase IV [Acinetobacter baumannii AB0057]
gi|400206139|gb|EJO37119.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC-5]
gi|410401585|gb|EKP53724.1| putative DNA polymerase IV [Acinetobacter baumannii Naval-82]
gi|410410628|gb|EKP62527.1| putative DNA polymerase IV [Acinetobacter baumannii Canada BC1]
Length = 351
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 128/346 (36%), Positives = 193/346 (55%), Gaps = 16/346 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P L+ P+ + + ++I A+Y AR FG+R+AM A
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLRHLPVVISSHHPRAVIAAASYPAREFGLRSAMSMSQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S E
Sbjct: 62 RKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A +FI LP++
Sbjct: 121 VAMYIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--SFIQDLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP-Q 339
KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P Q
Sbjct: 179 KIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPVQ 234
Query: 340 A-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
A R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 235 AERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQTL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 441
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 295 QHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 340
>gi|374674123|dbj|BAL52014.1| DNA polymerase IV [Lactococcus lactis subsp. lactis IO-1]
Length = 364
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 127/370 (34%), Positives = 202/370 (54%), Gaps = 31/370 (8%)
Query: 94 ILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYE 146
+L D SR +H+DMDAF+A+VE NPSLKGKP+ + G ++ T +YE
Sbjct: 1 MLTFPLINDTSRKIIHIDMDAFFASVEVRDNPSLKGKPVVIARNPLQTGGRGVVSTCSYE 60
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
AR FG+ +AM A LCP+ IF+ ++ KYT S R++F +Y + AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDDIEAASIDEAYL 120
Query: 207 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 265
D+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P
Sbjct: 121 DVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMP 179
Query: 266 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTAD 323
+ + F++ LP+ K G+GK T L + N + LQK L F +
Sbjct: 180 EE---ALEFLAKLPVEKFHGVGKATVPKLHALGFFNGGD--LQKADPVDLAERFGVYGWE 234
Query: 324 FFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQ 377
+ G+ ++ R RKS+ ERT+ LLY +L++I+ +S ++
Sbjct: 235 LYQKAN-GIHNSKVKNYRERKSVGKERTYG-----KLLYLPDDIKAELSKISGKVSDSLK 288
Query: 378 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL---LKAELPVSLRLIG 434
L+G + LKL+ + F T+ +L + + S E+I + A + L+ + + +RL+G
Sbjct: 289 SHQLKGSIVILKLRYSDFTTLTKRKSLAEKLESPEEIAEVAQEIFEELEYDESLGVRLLG 348
Query: 435 LRVTQFNEDK 444
+ VT+F K
Sbjct: 349 VTVTEFGVPK 358
>gi|407473475|ref|YP_006787875.1| DNA polymerase IV [Clostridium acidurici 9a]
gi|407049983|gb|AFS78028.1| DNA polymerase IV [Clostridium acidurici 9a]
Length = 339
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 123/338 (36%), Positives = 197/338 (58%), Gaps = 20/338 (5%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA+VE + NP LKG P+ VG S ++ TANY ARR+GV +AMPGFIAR+ CP
Sbjct: 1 MDAFYASVEEVDNPKLKGLPVIVGGQSEHGVVTTANYHARRYGVHSAMPGFIARQRCPNG 60
Query: 169 IFVPTDFTKYTYYSDLTRKVF-CKYDPNFM--AASLDEAYLDITEVCRERGISGIEIAEE 225
F+P + Y +++R+VF Y+ + S+DEAYLD++ + + + +EI EE
Sbjct: 61 QFLPVRMER---YKEVSRQVFGILYEIADLIEPVSIDEAYLDVSNIEK----NPLEIVEE 113
Query: 226 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGG 285
++ V +E GLT S G++ N+ LAK+ SD NKPNG ++ + V + L + + G
Sbjct: 114 IKYKVLKETGLTMSRGISYNKFLAKLASDWNKPNGIKIITKE--MVPDILLPLSVSSVHG 171
Query: 286 IGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRK 344
IGK + L ++ GI T +E+++ L F S + + + G+ + + RK
Sbjct: 172 IGKKSSQKLNNI-GIYTIKELMRLPEDFLVDFFGKSGREIYNRIR-GIDNRTVNISSERK 229
Query: 345 SISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVT 403
SI ERTF+ T++K +L L + + L ++ + ++ +T+TLK+K +F +TR +T
Sbjct: 230 SIGVERTFTNHTKNKEILQEYLYKFSLELELSLKSKEMQAKTITLKIKDTNFRTQTRGIT 289
Query: 404 LQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQF 440
L +I+SS++I + LLK + +RLIGL V+
Sbjct: 290 LSNHITSSKEIFNISKNLLKEVSISADIRLIGLSVSNL 327
>gi|329850033|ref|ZP_08264879.1| impB/mucB/samB family protein [Asticcacaulis biprosthecum C19]
gi|328841944|gb|EGF91514.1| impB/mucB/samB family protein [Asticcacaulis biprosthecum C19]
Length = 365
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/360 (35%), Positives = 199/360 (55%), Gaps = 14/360 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE P L+GKP+AVG ++ A+YEAR++GV +AMP A
Sbjct: 10 RKIIHVDMDAFFASVEQRDFPDLRGKPVAVGGDGLRGVVAAASYEARKYGVYSAMPSVTA 69
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFV F Y S R +F Y P SLDEAYLD+TE + S +
Sbjct: 70 KRKCPDLIFVKHRFEVYREVSHQIRDIFFDYTPLVEPLSLDEAYLDVTENLKGM-TSATQ 128
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAE++R + + LT SAGV+ N+ LAK+ SD NKP+G FV+ + F++SLP++
Sbjct: 129 IAEDIRARIRDVTQLTASAGVSYNKFLAKIASDQNKPDGLFVIKPSQGP--DFVASLPVK 186
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
K G+G T + + G+ T ++ + + ++ +V G+ R
Sbjct: 187 KFYGVGPATASKM-NRLGLYTGMDIRNQTLAFLQKHFGISGSYYYNVSRGICHRQVKPDR 245
Query: 342 FRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
RKS+ E TF ED + L + +L I + + ++ +G++GRT+TLK+K A F
Sbjct: 246 ERKSVGGENTF--FEDVSTLDSAWAQLLPILDKVWRHIEGKGIKGRTVTLKVKYADFTTI 303
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDKVRAPSDPTQKTL 456
TR+ T ++ + + + LL+ PV ++RL+G+ ++ +ED+ P D Q +L
Sbjct: 304 TRSKTFAAAVADRDTMTRIGRELLEGVFPVVKNIRLLGISLSSLSEDEADEPEDMRQLSL 363
>gi|451821300|ref|YP_007457501.1| DNA polymerase IV [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787279|gb|AGF58247.1| DNA polymerase IV [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 348
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/341 (36%), Positives = 192/341 (56%), Gaps = 13/341 (3%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKL 164
LH+DMDAF+A+VE L NP+L+GKP+ VG S ++ T +YEAR+FGV +AMP F+A++
Sbjct: 6 LHIDMDAFFASVEQLDNPALRGKPVIVGGASERGVVSTCSYEARKFGVHSAMPIFMAKEK 65
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 224
CP IFVP + +YT S K+F + P S+DE +LDI++ + G+E A
Sbjct: 66 CPNGIFVPGRYGRYTKVSQEIFKIFNEVTPLVEQVSIDEGFLDISQ---GKFNDGMEAAR 122
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 284
++ V+ E GLT S G++ N+ LAK+ SD NKPNG + + + + F LPI KI
Sbjct: 123 YIKNKVFREVGLTLSIGISYNKFLAKLASDWNKPNGIKEINKEMLPDILF--PLPISKIH 180
Query: 285 GIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR 343
G+GKV+ L ++ GI +++ F + D + + G+ + R
Sbjct: 181 GLGKVSVAKLNNI-GIYYVKDLYNMPKDFYIDCFGKNGIDIYNRI-RGIDNRKVETLHER 238
Query: 344 KSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAV 402
KS+ E T T +K L L E + + ++++ + G+T+TLK KT +FE TR+
Sbjct: 239 KSVGKETTLKFDTRNKEELAEYLKEFSFEIEEILRRKNVVGKTITLKFKTKNFENHTRSK 298
Query: 403 TLQKYISSSEDILKHAS-VLLKAELPVSLRLIGLRVTQFNE 442
TL YI ++ +I A +L EL +RLIG+ ++ F E
Sbjct: 299 TLNYYIGNNSEIFNVAKELLEDEELNEEVRLIGISISSFKE 339
>gi|89256328|ref|YP_513690.1| DNA polymerase IV [Francisella tularensis subsp. holarctica LVS]
gi|156502401|ref|YP_001428466.1| DNA polymerase IV [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254367662|ref|ZP_04983683.1| DNA polymerase IV, DNA damage inducible protein P [Francisella
tularensis subsp. holarctica 257]
gi|290952880|ref|ZP_06557501.1| DNA polymerase IV [Francisella tularensis subsp. holarctica URFT1]
gi|422938730|ref|YP_007011877.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC200]
gi|423050677|ref|YP_007009111.1| DNA polymerase IV [Francisella tularensis subsp. holarctica F92]
gi|122500763|sp|Q2A3L2.1|DPO4_FRATH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|226738232|sp|A7NC07.1|DPO4_FRATF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|89144159|emb|CAJ79420.1| DNA polymerase IV, devoid of proofreading,damage inducible protein
P [Francisella tularensis subsp. holarctica LVS]
gi|134253473|gb|EBA52567.1| DNA polymerase IV, DNA damage inducible protein P [Francisella
tularensis subsp. holarctica 257]
gi|156253004|gb|ABU61510.1| ImpB/MucB/SamB family protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|407293881|gb|AFT92787.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC200]
gi|421951399|gb|AFX70648.1| DNA polymerase IV [Francisella tularensis subsp. holarctica F92]
Length = 349
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 195/343 (56%), Gaps = 21/343 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE +NPSLK KP AVG + +I T NY AR +GVR+AMP I
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGVRSAMPTAI 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E S
Sbjct: 65 AMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEYKNSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+ LP+
Sbjct: 124 LIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQ--VDSFVKDLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLGSTNTP 338
+K+ G+GKV++ L+ + G+ TC + LQ+ SL V F + + + G+ +
Sbjct: 182 KKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGIDNREVN 238
Query: 339 QARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLKLKTAS 394
R RKS+S E T+ ED L KL + + L++ M +E + + +K
Sbjct: 239 PVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHYKSIIGIVVKFTDTK 296
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 437
F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 297 FN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>gi|418408826|ref|ZP_12982140.1| DNA polymerase IV [Agrobacterium tumefaciens 5A]
gi|358004842|gb|EHJ97169.1| DNA polymerase IV [Agrobacterium tumefaciens 5A]
Length = 359
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/338 (35%), Positives = 184/338 (54%), Gaps = 12/338 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP+L+G P+AVG ++ A+YEAR FGV +AMP A
Sbjct: 7 RKIIHIDMDAFYASVEQRDNPALRGLPVAVGGSAARGVVAAASYEARTFGVHSAMPSVTA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CP+LIFVP F Y S R++F +Y P SLDEAYLD+TE + I+ E
Sbjct: 67 KRKCPDLIFVPPRFEVYRQVSQQIREIFAEYTPLIEPLSLDEAYLDVTENLKGMEIA-TE 125
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + L SAG++ N+ LAK+ SD+NKPNGQ V+ P + F+ +L +
Sbjct: 126 IALEIRAKIKAVTSLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPG---FVEALAV 182
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T ++ GI T ++ K + +F ++ G+
Sbjct: 183 KKFHGVGPATAERMKR-HGIETGLDLKSKSLGFLQQHFGKSGPYFYNIARGIDERQVKPD 241
Query: 341 RFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TF +D L +L +A+ + + + G+T+T+K+K + F T
Sbjct: 242 RIRKSVGAEDTFVEDIDDLDLAKAELGPLAQKVWRYCEAHDITGKTVTVKIKYSDFSQAT 301
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 435
R+ T+ +S I + + LL + P +RL+G+
Sbjct: 302 RSKTVSGAVSDLATIQEMSESLLASVFPFKRPVRLLGI 339
>gi|94497839|ref|ZP_01304405.1| DNA-directed DNA polymerase [Sphingomonas sp. SKA58]
gi|94422728|gb|EAT07763.1| DNA-directed DNA polymerase [Sphingomonas sp. SKA58]
Length = 360
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 193/347 (55%), Gaps = 14/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI---CTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+G P+AVG T +YEAR FGVR+AMPG A
Sbjct: 7 RKIIHVDMDAFYASVEQRDDPSLRGLPIAVGGGGPRGVVATCSYEARTFGVRSAMPGARA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
R+LCP+L+FV F Y S R++F ++ SLDEAYLD+T + GI S
Sbjct: 67 RRLCPDLLFVKPRFEVYRAVSVQIREIFARFTDMIQPLSLDEAYLDVT--VNKPGIASAT 124
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 279
+A+E+R + E GLT SAGV+ N+L+AK+ SD NKP+G V+ P + A FI+++P
Sbjct: 125 RVAQEIRRMIRAETGLTASAGVSYNKLIAKLASDQNKPDGICVVRPAEGAA---FIAAMP 181
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+R+I G+G VT ++ GI T ++ + S ADF+ G +
Sbjct: 182 VRRIHGVGPVTARRMQ-ALGIETGADLRARDLPFLQAHFGSAADFYYRAARGEDDRPVRE 240
Query: 340 ARFRKSISSERT-FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+ RKS+S E T F D+ L +L I+ L ++K GRT+ LK+K A F +
Sbjct: 241 RQSRKSVSVEDTFFGDLTDRDALVTELDRISASLWTRIEKAQAWGRTVVLKVKFADFRII 300
Query: 399 TRAVTLQKYISSSEDILKHA--SVLLKAELPVSLRLIGLRVTQFNED 443
TR+ + + S+E + + +L + LP+ RL+GL V D
Sbjct: 301 TRSRSFASPVRSAEQLAQAGRELLLAQLPLPLGARLLGLGVHNLEGD 347
>gi|417845577|ref|ZP_12491603.1| DNA polymerase IV [Haemophilus haemolyticus M21639]
gi|341954646|gb|EGT81119.1| DNA polymerase IV [Haemophilus haemolyticus M21639]
Length = 355
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 130/351 (37%), Positives = 188/351 (53%), Gaps = 24/351 (6%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFIARK 163
+H+DMD FYA++E NP+L+GKP+AVG S ++ T NYEAR+FG+ +AMP A K
Sbjct: 8 IHIDMDCFYASIEIRENPNLQGKPVAVGGSSRQRGVLTTCNYEARKFGLHSAMPTAQAIK 67
Query: 164 LCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIA 223
CP LI VP + Y S ++F +Y SLDEAYLD+T C++ S IA
Sbjct: 68 KCPNLILVPVNMALYKQVSAQIHQIFQRYTDIIEPLSLDEAYLDVTH-CQKCSGSATWIA 126
Query: 224 EELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPIRK 282
+E+R +++ E LT SAGVAP + LAK+ SD+NKPNGQFV+ PN+ V FI +L + K
Sbjct: 127 QEIRQAIFNELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNE---VEEFIKTLSLNK 183
Query: 283 IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARF 342
I G+GKVT L D+ G+ TC ++ ++ G+ R
Sbjct: 184 IPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRIWDFSHGIDDREVQAHRE 242
Query: 343 RKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
RKS+ E+T ++ + AL LY++L E +S ++ R + +KLK
Sbjct: 243 RKSVGVEQTLIENIHTIEQASALLNNLYQELIRRLERVSRNIPLSAF--RKIGVKLKFED 300
Query: 395 FEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 444
F+V T T L + S + +L + K +RLIGL V E+K
Sbjct: 301 FQVTTLEKTGLPLSLESFQQLLPQIFMRAKGR---KIRLIGLHVNLPEENK 348
>gi|148556499|ref|YP_001264081.1| DNA-directed DNA polymerase [Sphingomonas wittichii RW1]
gi|148501689|gb|ABQ69943.1| DNA-directed DNA polymerase [Sphingomonas wittichii RW1]
Length = 380
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 129/350 (36%), Positives = 193/350 (55%), Gaps = 20/350 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFI 160
R +H+DMDAFYA+VE +P+LKG+P+AVG ++ A+YEAR++GVR+AM +
Sbjct: 23 GRKIIHIDMDAFYASVEQRDDPALKGRPVAVGGTRERGVVAAASYEARKYGVRSAMASAL 82
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 219
AR+LCP+L+FV F Y S +F Y SLDEAYLD+T +GI+
Sbjct: 83 ARRLCPDLLFVRPRFEVYREVSRQIHLIFADYTDLVEPLSLDEAYLDVTN--NHQGIATA 140
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
E+A ++R + EE GLT SAGV+ N+ +AK+ SD NKP+G V+ D+ + FI+ P
Sbjct: 141 TEVARQIRARIREETGLTASAGVSYNKFIAKLASDHNKPDGLCVVRPDQG--LAFIAMQP 198
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
+ + G+G VT + + GI+T ++ + L F S D+F +
Sbjct: 199 VGRFHGVGPVTATRM-EKLGIHTGADLRRCSREFLGQQFGKS-GDYFYLAARAIDHRAVR 256
Query: 339 QARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
R RKSI SE TF ED L L E +E ++ ++ G GRT+++KL+ +
Sbjct: 257 PDRVRKSIGSENTFFHDLYSHED---LAAALLESSESVARHAERTGKAGRTISIKLRYSD 313
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFNE 442
F TRA TL ++ + I + A LL PV+L RL+G+ ++ E
Sbjct: 314 FRTLTRARTLPAPVADAARIQEVALALLAPLEPVALGVRLLGVTLSSLGE 363
>gi|408673241|ref|YP_006872989.1| DNA polymerase IV [Emticicia oligotrophica DSM 17448]
gi|387854865|gb|AFK02962.1| DNA polymerase IV [Emticicia oligotrophica DSM 17448]
Length = 355
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 128/342 (37%), Positives = 191/342 (55%), Gaps = 16/342 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +H+DMDAF+A+VE L+GKP+AVG S ++ A+YEAR+FGVR+AM
Sbjct: 1 MHRKIIHIDMDAFFASVEQRDFAELRGKPVAVGGSSERGVVAAASYEARKFGVRSAMSSR 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-S 218
IA++ CP LIFV F Y S R++F +Y P SLDEAYLD+TE +GI +
Sbjct: 61 IAKQKCPSLIFVKPRFEVYKQVSREIREIFLEYTPLVEPLSLDEAYLDVTENL--KGIAT 118
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISS 277
EIA+E++ + E+ LT SAGV+ N+ LAK+ SD KP+G FV+ P+ A F+
Sbjct: 119 ATEIAQEIKVRIKEKTTLTASAGVSVNKFLAKIASDYRKPDGLFVIKPSQAEA---FVEK 175
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
L I K GIG+VT + + GI T +E+ +K ++ + G+ + +
Sbjct: 176 LEIAKFHGIGRVTAEKMHKM-GIFTGKELREKSLEFLVNNFGKVGRYYHDIARGIDNRSV 234
Query: 338 PQARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
RKS+ E TF +TE LY +L +I E L MQ+ G+++TLK+K A F
Sbjct: 235 NPDSIRKSVGVENTFDRDLTEPDD-LYHELDDIIEQLWRRMQRANAFGKSITLKIKFADF 293
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGL 435
+ TR+ T + + + K + +L LP +RL+G+
Sbjct: 294 DTITRSRTTHLPVFEKDFLAKVSYEMLNNLFPLPKGVRLMGV 335
>gi|445429972|ref|ZP_21438363.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC021]
gi|444761010|gb|ELW85437.1| putative DNA polymerase IV [Acinetobacter baumannii OIFC021]
Length = 351
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 129/346 (37%), Positives = 191/346 (55%), Gaps = 16/346 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LK P+ + + ++I A+Y AR FG+R+AM A
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLKHLPVVISSHHPRAVIAAASYPAREFGLRSAMSMSQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S E
Sbjct: 62 RKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A +R ++ GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A FI LP++
Sbjct: 121 VAMHIREDIFRLTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--NFIQDLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP-Q 339
KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P Q
Sbjct: 179 KIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPVQ 234
Query: 340 A-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
A R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 235 AERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQTL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 441
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 295 QHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 340
>gi|417091376|ref|ZP_11956303.1| DNA polymerase IV [Streptococcus suis R61]
gi|353533248|gb|EHC02913.1| DNA polymerase IV [Streptococcus suis R61]
Length = 364
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/363 (34%), Positives = 201/363 (55%), Gaps = 30/363 (8%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
DLSR +HVDMDAF+AA+E NP+LKGKP+ +G ++ T NYEAR FG+ +
Sbjct: 9 DLSRKIIHVDMDAFFAAIEVRDNPALKGKPVIIGADPRLSGGRGVVSTCNYEARAFGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY R++F +Y S+DEAYLD+TE +
Sbjct: 69 AMSSKEAYERCPQAIFISGNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP+G +LP D + ++
Sbjct: 127 LGIGSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGIL 186
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLG 331
+SLP+ K G+GK T L ++ G+ T +++L + L F D + G
Sbjct: 187 ---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMALIDCFGRFGYDLYRK-ARG 241
Query: 332 LGSTNTPQARFRKSISSERTFSVTEDKALLYR------KLAEIAEMLSADMQKEGLRGRT 385
+ ++ R RKSI ERT+ + LLYR +L + + ++A +++ +GRT
Sbjct: 242 ISNSPVKTNRVRKSIGKERTY-----RKLLYRDEDVLKELVSLCQRVAASLERNEKQGRT 296
Query: 386 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 443
+ LK++ F T+ +L++ + ++ I K L + +RL+G+ VT F E
Sbjct: 297 IVLKIRYGDFSTLTKRHSLEEPTNQAQVIEKEIRQLFEEVGRAEKGVRLLGVTVTNFMEG 356
Query: 444 KVR 446
+ R
Sbjct: 357 ESR 359
>gi|398827094|ref|ZP_10585309.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Phyllobacterium sp. YR531]
gi|398220334|gb|EJN06787.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Phyllobacterium sp. YR531]
Length = 353
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/340 (37%), Positives = 183/340 (53%), Gaps = 16/340 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP+L+G P+AVG ++ TA+YEAR+FGV +AMP A
Sbjct: 3 RKIIHIDMDAFYASVEQRDNPALRGLPIAVGGSGARGVLTTASYEARKFGVHSAMPSVTA 62
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ CP LIFV Y S R++FC Y P SLDEAYLD+TE + I+ E
Sbjct: 63 ARKCPSLIFVKPRLEVYRDVSQQIREIFCDYTPLVEPLSLDEAYLDVTENLKGMEIA-TE 121
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA E+R + GLT SAG++ N+ LAK+ SD+NKPNGQ V+P +FI LP++
Sbjct: 122 IASEIRARILAVTGLTASAGISYNKFLAKIASDLNKPNGQAVIPPKTGP--SFIQRLPVK 179
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
K G+G T + + GI T ++ Q+ L F + A +F + G+ + +
Sbjct: 180 KFHGVGPATAEKMHQL-GIETGADLKQRSFEFLSQHFGKAGA-YFYGIARGIDNRDVQPD 237
Query: 341 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQ---KEGLRGRTLTLKLKTASFEV 397
R RKSI +E TF ED L ++ ++S Q +T+TLK+K F+
Sbjct: 238 RKRKSIGAEDTFP--EDVFELETAREQLHPLVSKVCQFCSNNDTGAKTVTLKVKYFDFQT 295
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGL 435
TR+ T + + LL++ P +RL+G+
Sbjct: 296 ITRSRTSPAASRTEASVWIILEPLLQSVFPTRKGIRLLGV 335
>gi|417861785|ref|ZP_12506840.1| DNA polymerase IV [Agrobacterium tumefaciens F2]
gi|338822189|gb|EGP56158.1| DNA polymerase IV [Agrobacterium tumefaciens F2]
Length = 359
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 185/344 (53%), Gaps = 12/344 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP+L+G P+AVG ++ A+YEAR FGV +AMP A
Sbjct: 7 RKIIHIDMDAFYASVEQRDNPALRGLPVAVGGSAARGVVAAASYEARTFGVHSAMPSVTA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
R+ CP+LIFV F Y S R++F +Y P SLDEAYLD+TE + I+ E
Sbjct: 67 RRKCPDLIFVLPRFDVYRQVSQQIREIFAEYTPLIEPLSLDEAYLDVTENLKGMEIA-TE 125
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + F+ +L +
Sbjct: 126 IALEIRARIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPG---FVEALAV 182
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T +R GI T ++ K + +F ++ G+
Sbjct: 183 KKFHGVGPATAERMRR-HGIETGLDLKSKSLGFLQQHFGKSGPYFYNIARGIDERQVRPD 241
Query: 341 RFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TF +D L +L A+ + + + G+T+T+K+K + F T
Sbjct: 242 RIRKSVGAEDTFIEDIDDLDLAKAELGPFAQKVWRYCEAHDITGKTVTVKIKYSDFTQAT 301
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
R+ T+ + I + A LL + P +RL+G+ ++ +
Sbjct: 302 RSRTVSGAVPDLATIQEMAETLLASVFPFKRPVRLLGVTLSSLS 345
>gi|418297525|ref|ZP_12909366.1| DNA polymerase IV [Agrobacterium tumefaciens CCNWGS0286]
gi|355537711|gb|EHH06966.1| DNA polymerase IV [Agrobacterium tumefaciens CCNWGS0286]
Length = 365
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 127/347 (36%), Positives = 188/347 (54%), Gaps = 12/347 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA---NYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+GKP+AVG + +YEAR FGVR+AMP A
Sbjct: 10 RKIIHVDMDAFYASVEQRDNPELRGKPLAVGGAAARGVVAAASYEAREFGVRSAMPSVTA 69
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ CP+LIFV F Y S R++F +Y P SLDEAYLD+TE ++ I+ +
Sbjct: 70 ARKCPDLIFVKPRFEVYRAVSQQIREIFAEYTPIIEPLSLDEAYLDVTENLKDMPIA-TD 128
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F+ L +
Sbjct: 129 IALEIRARIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---FVEQLAV 185
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T ++ + GI T ++ K + +F + G+
Sbjct: 186 KKFHGVGPATAEKMQRL-GIETGTDLKAKSLQFLVEHFGKSGPYFYGIARGIDDRRVRPD 244
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TF+ D L +L +AE + A + +G G+T+T+K+K + F T
Sbjct: 245 RVRKSVGAEDTFTADISDLDLATSELRPLAEKVWAYCEAKGFSGKTVTVKIKYSDFTQAT 304
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 444
R+ T S +DI A+ LL P +RL+G+ ++ +K
Sbjct: 305 RSRTSALPYSGIKDIFDAANALLAGVYPFKRPVRLLGVTLSSLTNEK 351
>gi|323345436|ref|ZP_08085659.1| DNA-directed DNA polymerase IV [Prevotella oralis ATCC 33269]
gi|323093550|gb|EFZ36128.1| DNA-directed DNA polymerase IV [Prevotella oralis ATCC 33269]
Length = 381
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 130/349 (37%), Positives = 192/349 (55%), Gaps = 18/349 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+AAVE NP L+GKP+AVG ++ TA+YEAR+FGV +AM A
Sbjct: 20 RKIIHIDMDAFFAAVEQRDNPDLRGKPIAVGYDGPRGVVTTASYEARKFGVHSAMSIAKA 79
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP LI VP Y S+ ++F +Y S+DEA+LD+T ++ +
Sbjct: 80 KQLCPHLIIVPNRRNVYREISNEVHEIFQEYTDLVEPLSIDEAFLDVTHNSFNISLAQ-D 138
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+E++ + + LT SAG++ N+ LAK+ SD KP+G V+ R + FIS LPI
Sbjct: 139 IAKEIKDKIRKRLNLTASAGISYNKFLAKIASDYRKPDGLMVIHPHR--ALDFISKLPIE 196
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K G+G T I+ + N + LQ+ SL L F S + + + G+ +
Sbjct: 197 KFWGVGPKTAQIMHHIGIFNGAQ--LQEVSLHHLIETFGKS-GNIYYNFARGIDNRPVIA 253
Query: 340 ARFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+ RKS+ E TF + + A+L +L I LS + K GRTLTLK+K F
Sbjct: 254 SAIRKSVGCEHTFLEDIRLNSAILI-ELYHIVTELSGRISKSKFNGRTLTLKVKFTDFTQ 312
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQFNED 443
TR+ T+ K + S +DIL A LL +E+ + S+RL+GL V+ D
Sbjct: 313 ITRSKTVHKVLISKDDILPLAKELL-SEVDLTKQSVRLLGLCVSNLYND 360
>gi|425743150|ref|ZP_18861241.1| putative DNA polymerase IV [Acinetobacter baumannii WC-487]
gi|425484302|gb|EKU50707.1| putative DNA polymerase IV [Acinetobacter baumannii WC-487]
Length = 351
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 129/346 (37%), Positives = 191/346 (55%), Gaps = 16/346 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LK P+ + + ++I A+Y AR FG+R+AM A
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLKHLPVVISSHHPRAVIAAASYPAREFGLRSAMSMSQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP ++ + +F KY S +F +Y SLDEAYLD+TE ++ S E
Sbjct: 62 RKLCPHVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A +R ++ GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A +FI LP++
Sbjct: 121 VAMHIREDIFRLTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--SFIQDLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP-Q 339
KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P Q
Sbjct: 179 KIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPVQ 234
Query: 340 A-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
A R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 235 AERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQTL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 441
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 295 QHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 340
>gi|313674610|ref|YP_004052606.1| DNA-directed DNA polymerase [Marivirga tractuosa DSM 4126]
gi|312941308|gb|ADR20498.1| DNA-directed DNA polymerase [Marivirga tractuosa DSM 4126]
Length = 359
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 131/350 (37%), Positives = 196/350 (56%), Gaps = 16/350 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE + P LK KP+AVG ++ A+YEAR++G+ +AMP +A
Sbjct: 7 RKIIHVDMDAFYASVEQMDFPDLKDKPVAVGGNRQRGVVAAASYEARKYGIHSAMPSKLA 66
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
C +L+FV F +Y S L R++F +Y SLDEAYLD+TE + GIS
Sbjct: 67 ASKCKDLVFVKPRFDRYRELSHLIREIFYRYTDLVEPLSLDEAYLDVTE--NKMGISTAT 124
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA E++ ++ E GLT SAGV+ N+ LAK+ SD KP+G F++ + V++FI LPI
Sbjct: 125 DIAIEIKKAIKSEIGLTASAGVSINKFLAKIASDYRKPDGIFIIKPHQ--VLSFIEQLPI 182
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP 338
K G+GK T + + I T + LQ SL L F +F SV G
Sbjct: 183 EKFFGVGKKTAEKMHRL-NIKTGAD-LQAKSLKELVKHFG-KQGRYFYSVSRGEDYRKVN 239
Query: 339 QARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +E TFS++ + K+ + L IAE ++ T+TLK+K F+
Sbjct: 240 PNRIRKSVGAENTFSISLKTKSAILEALQPIAEKCWKRYKQSDANAHTITLKVKFDDFKQ 299
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFN-EDKV 445
TR+ + ++ I S+ + L+ + EL S+RL+G ++ F E+K+
Sbjct: 300 ITRSKSFEEAIYSAAIFDQGLESLMDSFELYQSVRLVGCSLSNFEIEEKI 349
>gi|116873410|ref|YP_850191.1| DNA polymerase IV [Listeria welshimeri serovar 6b str. SLCC5334]
gi|123463973|sp|A0AK80.1|DPO4_LISW6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|116742288|emb|CAK21412.1| DNA polymerase IV [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 356
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 194/351 (55%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFI 275
S +A +++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V+ P + A F+
Sbjct: 120 KSATMVARDIQQTIYHELGLTASAGVSFNKFIAKIASDFKKPAGMTVVAPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYHLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L + A+ + A + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEARLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|152979982|ref|YP_001355275.1| DNA-damage-inducible protein p [Janthinobacterium sp. Marseille]
gi|151280059|gb|ABR88469.1| DNA-damage-inducible protein p [Janthinobacterium sp. Marseille]
Length = 401
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 128/380 (33%), Positives = 186/380 (48%), Gaps = 39/380 (10%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM------------------------ 139
R H+DMDAFYA+VE L P L+G+P+ +G MS+
Sbjct: 21 GRRIAHLDMDAFYASVELLRYPELRGQPVVIGGMSVHAPLTQADGSRQYARLRDYAGRGV 80
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T+ YEAR GV +AM A KL P+ I +P DF Y +YS L ++ P+
Sbjct: 81 VTTSTYEARALGVFSAMGIMKAAKLAPDAILLPVDFDAYRHYSRLFKQAVADIAPHIENR 140
Query: 200 SLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPN 259
+DE Y+D++E E +A ++ +V + GL+CS G+APN+LLAK+CSD+ KPN
Sbjct: 141 GIDEIYIDLSEHAEETH----ALASRIKNAVQQATGLSCSIGIAPNKLLAKICSDLEKPN 196
Query: 260 GQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEML-QKGSLLCAVFS 318
G +L +A T I LP RKI GIG L G+NT EE+ +LL F
Sbjct: 197 GLTILTQADIA--TRIWPLPARKINGIGPRAAEKL-TALGLNTIEELAGADATLLHEHFG 253
Query: 319 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS----VTEDKALLYRKLAEIAEMLSA 374
S AD+ V G+ KS+S E TF D+ L + E ++
Sbjct: 254 RSYADWLGRVAQGIDERPVVTYSEPKSVSRETTFENNLHAKRDREALGGIFTRLCERVAG 313
Query: 375 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRL 432
D++++G GRT+ +KL+ A F + TR +TL Y + I + A LK +P+ RL
Sbjct: 314 DLERKGYVGRTVGIKLRFADFRIVTRDLTLPAYTDDAVAIRQAAGECLK-RIPLDQPFRL 372
Query: 433 IGLRVTQFNEDKVRAPSDPT 452
+G+R+ DP
Sbjct: 373 LGVRIGTLARKDSLPAEDPV 392
>gi|417918196|ref|ZP_12561748.1| DNA polymerase IV [Streptococcus parasanguinis SK236]
gi|342828651|gb|EGU63017.1| DNA polymerase IV [Streptococcus parasanguinis SK236]
Length = 368
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 131/362 (36%), Positives = 197/362 (54%), Gaps = 40/362 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NPSLKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPSLKGKPVVIGQDPRQSGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A LCP+ IF+ ++ KY + R++F +Y S+DEAYLD+TE +
Sbjct: 69 AMSSKEALDLCPQAIFISGNYEKYREVGEQVREIFKRYTDLIEPMSIDEAYLDVTE-NKI 127
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 273
+ S ++IA ++ +++EE LT SAGV+ N+ LAK+ SD KP G VLP D
Sbjct: 128 QSKSAVKIARLIQHAIWEELHLTASAGVSYNKFLAKMASDYQKPRGLTVVLPED---AED 184
Query: 274 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL- 332
F+S + I K G+GK T L ++ GI T G+ L A+ + D F G L
Sbjct: 185 FLSQMDIAKFHGVGKKTVERLHEM-GIYT-------GADLLAIPEMTLIDRFGRFGYDLF 236
Query: 333 ----GSTNTP--QARFRKSISSERTFSVTEDKALLYRK---LAEIAEM---LSADMQKEG 380
G N+P R RKSI ERT+ + LLY + L EIA + ++ ++K G
Sbjct: 237 RKARGIHNSPVKNHRIRKSIGKERTY-----RKLLYAEDDILEEIANLSSKVAQSLEKHG 291
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVT 438
+G+TL LK++ F T+ +TL + +E I + A + + + +RL+G+ +T
Sbjct: 292 KQGKTLVLKVRYGDFTTLTKRMTLTEPTREAERINRSARHIFQEIESINTGIRLLGVTMT 351
Query: 439 QF 440
F
Sbjct: 352 NF 353
>gi|424714844|ref|YP_007015559.1| DNA polymerase IV [Listeria monocytogenes serotype 4b str. LL195]
gi|424014028|emb|CCO64568.1| DNA polymerase IV [Listeria monocytogenes serotype 4b str. LL195]
Length = 368
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 130/355 (36%), Positives = 195/355 (54%), Gaps = 21/355 (5%)
Query: 98 EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVR 153
+A D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV
Sbjct: 10 DAVMDTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVH 69
Query: 154 AAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR 213
+AMP A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE
Sbjct: 70 SAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--N 127
Query: 214 ERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAV 271
++G+ S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V P + A
Sbjct: 128 KKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA- 186
Query: 272 MTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSV 328
F+ +P+ K G+GKVT L + GI T + L+K S L+ + H +
Sbjct: 187 --FLEQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYHLYRHVR 242
Query: 329 GLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 387
G N P R RKS+ E TF D +L + L + A+ + + K G+T+
Sbjct: 243 GRSNNIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVV 300
Query: 388 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
LKL+ + F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 301 LKLRYSDFTTITKRLTLNEYTNDTSQIYQAAALLLRESYTGQDSIRLIGLTVTNL 355
>gi|349575619|ref|ZP_08887530.1| DNA-directed DNA polymerase IV [Neisseria shayeganii 871]
gi|348012887|gb|EGY51823.1| DNA-directed DNA polymerase IV [Neisseria shayeganii 871]
Length = 394
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 167/306 (54%), Gaps = 15/306 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE L P L +P+ V G S++C ANYEAR+FGVR+AM A
Sbjct: 36 RKIIHIDMDAFFASVELLRRPELCSRPVVVAWEGARSVVCAANYEARKFGVRSAMALATA 95
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG-- 219
R+ CP+L+ +P DF +Y S +F ++ SLDEAYLD++ R +SG
Sbjct: 96 RRRCPQLVCLPPDFARYRAVSAQIHAIFRRHTDIIEPLSLDEAYLDVS-----RPLSGHR 150
Query: 220 --IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
+IA+ +R + E GLT SAGVAPN+L+AK+ SD KPNGQ V+ ++ V+ F+
Sbjct: 151 YARDIAQAIRAEIRAETGLTASAGVAPNKLIAKIASDWRKPNGQTVVAPEQ--VLRFLHP 208
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP KI G+GKVT + D GI T +M Q + + G+
Sbjct: 209 LPPAKIPGVGKVTAAKMAD-LGIRTIADMAQWPREHLVLHFGRYGHRLYDLARGIDERPV 267
Query: 338 PQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R K +S E T + A L L IAE + + ++ R LTLKLKTA F+V
Sbjct: 268 RPEREYKQVSVEHTLAQDVPLAGLLPMLPGIAEEVWRQLARKRYAARRLTLKLKTADFQV 327
Query: 398 RTRAVT 403
TR+ T
Sbjct: 328 LTRSAT 333
>gi|340780896|ref|YP_004747503.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
gi|340555049|gb|AEK56803.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
Length = 373
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 180/343 (52%), Gaps = 11/343 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +HVDMDAF+AAVE P L+G P+ VG ++ T +YEARRFG+R+AM
Sbjct: 12 RKIIHVDMDAFFAAVEQRDRPELRGLPVIVGGDPNGRGVVATCSYEARRFGIRSAMSAAR 71
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
AR LCP+ IFV Y S + Y SLDEA+LD+T + G +
Sbjct: 72 ARSLCPQAIFVRPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFLDVTAATTD-GTLAV 130
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
EIA E+ ++ E GLT SAGV+ N+LLAK+ SD KP+G FV+P +R + F++ LP+
Sbjct: 131 EIAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPPERG--LAFLAPLPV 188
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
K+ G+G T L G+ T ++ + +F V + +
Sbjct: 189 GKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFGKSGGWFYDVARAIDERPVQPS 247
Query: 341 RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +ERTFS ED++++ L E+A ++A +Q L G T+ +K + F T
Sbjct: 248 RQRKSVGTERTFSKNLEDRSVMRTTLQEMAAQVAARLQALNLAGHTVNIKARFPDFTTVT 307
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQF 440
RA T + I S + I LL +P S+RL+G+ V+
Sbjct: 308 RAYTATEGIGSVDAIAALLPELLDRAVPKSASVRLLGITVSSL 350
>gi|153003022|ref|YP_001377347.1| DNA-directed DNA polymerase [Anaeromyxobacter sp. Fw109-5]
gi|152026595|gb|ABS24363.1| DNA-directed DNA polymerase [Anaeromyxobacter sp. Fw109-5]
Length = 399
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 129/344 (37%), Positives = 186/344 (54%), Gaps = 14/344 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIA 161
R+ LH+D+DAF+A+VE L + SL+G+P+ VG S ++C A+YEARRFGVR+AMP A
Sbjct: 5 RTILHLDLDAFFASVEQLDDASLRGRPVIVGGPSRRGVVCAASYEARRFGVRSAMPTAQA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCPE FV F +Y S+ ++ +Y P SLDEA+LD+T R G +
Sbjct: 65 RKLCPEGTFVAPRFARYAELSERVFGIYRRYTPLVEPLSLDEAFLDVT-ASRALHGGGRD 123
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA ++ +V E GL SAGVA +L AK+ +D+ KP+G +P V F++ LP+
Sbjct: 124 IATAVKRAVRGECGLAVSAGVAEVKLAAKIATDLGKPDGLVEVPPG--GVAAFLAPLPVG 181
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
++ G+G VTE LR G+ E+ + + L AV S A ++ G
Sbjct: 182 RLWGVGPVTEGALRK-LGVTLVGELARLPETALAAVVGASNARGLRALASGEDPREVVPD 240
Query: 341 RFRKSISSERTFSVTED---KALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+S+ +E TF ED +A L R L E A + ++ GL G T+TLK+K A F +
Sbjct: 241 EEARSVGAEETFG--EDVTGRAALERALLEQAGRVGRRLRAAGLAGHTVTLKVKYADFTL 298
Query: 398 RTRAVTLQKYISSSEDILKHASV-LLKAELPVSLRLIGLRVTQF 440
TR TL I + A L + E +RL G+ V+ F
Sbjct: 299 VTRRTTLAHPTDDDRAIYEAARAQLARVEADRPVRLTGVSVSGF 342
>gi|115314775|ref|YP_763498.1| DNA polymerase IV [Francisella tularensis subsp. holarctica OSU18]
gi|122325207|sp|Q0BM23.1|DPO4_FRATO RecName: Full=DNA polymerase IV; Short=Pol IV
gi|115129674|gb|ABI82861.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
holarctica OSU18]
Length = 349
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 195/343 (56%), Gaps = 21/343 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE +NPSLK KP AVG + +I T NY AR +GVR+AMP I
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGVRSAMPTAI 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E S
Sbjct: 65 AMQKCPNLILLNTDFAKYKAASAVIRDIFYYFTDKVEPLSLDEAYLDVTDV-KEYKNSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+ LP+
Sbjct: 124 LIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQ--VDSFVKDLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLGSTNTP 338
+K+ G+GKV++ L+ + G+ TC + LQ+ SL V F + + + G+ +
Sbjct: 182 KKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGIDNREVN 238
Query: 339 QARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLKLKTAS 394
R RKS+S E T+ ED L KL + + L++ M +E + + +K
Sbjct: 239 PVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHYKSIIGIVVKFTDTK 296
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 437
F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 297 FN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>gi|299142010|ref|ZP_07035144.1| ATP-NAD kinase [Prevotella oris C735]
gi|298576472|gb|EFI48344.1| ATP-NAD kinase [Prevotella oris C735]
Length = 366
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 132/357 (36%), Positives = 202/357 (56%), Gaps = 22/357 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE P L+GKP+AVG ++CTA+YEAR+FGVR+AM +A
Sbjct: 2 RKIIHIDMDAFFASVEQRDRPELRGKPIAVGYDGARGVVCTASYEARKFGVRSAMSVQLA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
++LC ELI V ++ Y S+ +F Y SLDEA+LD+T ++GIS +
Sbjct: 62 KRLCRELIVVEGNYQHYREVSEQLHGIFHDYTDIIEPLSLDEAFLDVT--VNKKGISLAV 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+E++ + +E LT SAG++ N+LLAK+ SD KP+G + D+ M F++ LP+
Sbjct: 120 DIAKEIKQRIKDELRLTASAGISYNKLLAKIASDYRKPDGLCTIHPDK--AMNFVAKLPV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP 338
+ G+G T + + N + L+ SL L VF S F+ + G+
Sbjct: 178 EDLWGVGPKTARRMHRMGIFNALQ--LRACSLEHLKMVFGKSGPAFY-NYARGIDERPVV 234
Query: 339 QARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LSADMQKEGLRGRTLTLKLKTASF 395
R RKS+ E+TF ED +L L E+ + L+ ++K G+TLTLK+K A F
Sbjct: 235 VERTRKSVGCEQTF--LEDISLPSALLIELYHLVLELTTRIEKGNFEGKTLTLKIKYADF 292
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGLRVTQ-FNEDKVRAP 448
+ TR++T +K + + +DIL A LL + ++RL+GL V+ ED AP
Sbjct: 293 KQITRSITGRKLLKTKDDILPLAKRLLHLVHYDNAHAIRLMGLSVSNPGGEDGDAAP 349
>gi|167563378|ref|ZP_02356294.1| DNA polymerase IV [Burkholderia oklahomensis EO147]
gi|167570546|ref|ZP_02363420.1| DNA polymerase IV [Burkholderia oklahomensis C6786]
Length = 394
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 130/350 (37%), Positives = 196/350 (56%), Gaps = 24/350 (6%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPG 158
+R +H D D FYA+VE +PSL+G+P+AVG +I T NYEARR+GV +AM
Sbjct: 21 FARKIIHCDCDCFYASVEMRDDPSLRGRPLAVGGRPDQRGVIATCNYEARRYGVHSAMSS 80
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS 218
+A + CPEL+ +P +Y S L ++ Y P+ SLDEAYLD++ R +G S
Sbjct: 81 ALAMRKCPELLILPPAMDRYRAASRLIMAIYRDYTPDVEPLSLDEAYLDVSRATRCQG-S 139
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISS 277
G IA E+R V++ G+T SAGVAPN+ +AK+ SD NKP+G FV+ P++ V F+++
Sbjct: 140 GTLIAREIRERVHDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRPHE---VDAFVAA 196
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLGLGS 334
LP+RK+ G+GKVT L D GI TC+E L+ SL H F + G+
Sbjct: 197 LPVRKLHGVGKVTAARL-DRLGIRTCDE-LRGWSLF--DLHHEFGAFGRRLYELAHGIDE 252
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKEG-LRG-RTLTLK 389
+ RKS+S E T+ +D L + AEI +L A +++ G +R R L +K
Sbjct: 253 RPVRADQERKSVSVETTY--VQDLDTLDQCAAEIRRLTALLDARIERAGAVRSIRKLYVK 310
Query: 390 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ 439
++ A F+ RT + + + A L++ + PV L +G+R+ +
Sbjct: 311 IRFADFQ-RTTVECVADATDAETAVALLAKGLVRRKQPVRLLGVGVRIDE 359
>gi|404370742|ref|ZP_10976062.1| hypothetical protein CSBG_01957 [Clostridium sp. 7_2_43FAA]
gi|226913130|gb|EEH98331.1| hypothetical protein CSBG_01957 [Clostridium sp. 7_2_43FAA]
Length = 348
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 124/349 (35%), Positives = 194/349 (55%), Gaps = 13/349 (3%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R LHVDMDAF+A+VE L N +L+GKP+ VG +S ++ T +YEAR++GV +AMP F
Sbjct: 1 MERVILHVDMDAFFASVEQLDNKNLRGKPVIVGGVSERGVVSTCSYEARKYGVHSAMPIF 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+A+KLCP I++ T +Y S+ + S+DEAYLDIT + SG
Sbjct: 61 MAQKLCPHGIYLRTRMFRYKEVSNQVFDILKDVTSIIQPISIDEAYLDITHSNFK---SG 117
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
+E A ++ V +E GLT S G++ N+ LAK+ SD NKPNG ++ + + + P
Sbjct: 118 MEAARYIKNRVLKEIGLTISVGISYNKFLAKLASDWNKPNGIKIITKE--MIPHILLPFP 175
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
+ +I G+GK + L ++ GI T +++ + S + + + G+ +
Sbjct: 176 VSRIHGVGKKSVEKLNNI-GIFTVKDLYEMPKSFYIEYLGKYGLEIYDRIR-GIDNREVE 233
Query: 339 QARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS ERT S T DK L L + + +S + + L G+T+T+K KT+ F+
Sbjct: 234 VERDRKSYGKERTLKSDTHDKEELMLYLKDFSNEISGYLIRGNLEGKTITVKYKTSDFQN 293
Query: 398 RTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDKV 445
TR+ TL Y ++ EDI + +L E+ +RLIG+ V+ F E+KV
Sbjct: 294 HTRSKTLNYYTNNFEDIYRTCEEILDNEEINEEVRLIGVTVSSFKENKV 342
>gi|218961283|ref|YP_001741058.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Candidatus Cloacamonas acidaminovorans]
gi|167729940|emb|CAO80852.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Candidatus Cloacamonas acidaminovorans str. Evry]
Length = 353
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 122/341 (35%), Positives = 189/341 (55%), Gaps = 11/341 (3%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFIARK 163
+H+DMDAF+AA+E NP LKGK + VG + ++ T +YEAR+FGV + M + A
Sbjct: 5 IHIDMDAFFAAIEIRENPRLKGKCVIVGGPPNSRGVVSTCSYEARKFGVHSGMSSYQAWN 64
Query: 164 LCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIA 223
LCPE IF+ F Y S R++F ++ SLDEAYLD+TE + ++IA
Sbjct: 65 LCPEAIFIHPHFNLYKKVSHQIREIFYQWTDLVEPLSLDEAYLDVTE-NKLGEDDAVKIA 123
Query: 224 EELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKI 283
+ ++ + E+ GLTCSAGV+ N+ LAK+ SD+NKP+G +P ++ + + F +LPI K
Sbjct: 124 KLIKAEILEKTGLTCSAGVSYNKFLAKIGSDLNKPDGLTYIPPEKASEILF--ALPIEKF 181
Query: 284 GGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR 343
GIGKVT L+ GIN ++ + F+ V G+
Sbjct: 182 YGIGKVTSAKLKKK-GINNGADLYKYELKDLIRLLGKAGHFYYYVVRGIDKREVITEFEP 240
Query: 344 KSISSERTFSVTEDKA-LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAV 402
KS+S E TF D L L ++AE LS ++++G+RG +TLK+K +FE+ TR+
Sbjct: 241 KSLSCETTFYEDIDNLDYLLIILQQLAERLSNRLRQKGIRGNNITLKIKYDNFELITRSS 300
Query: 403 TLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 441
YI+ ++++ + LL A S +RL+GL + + +
Sbjct: 301 NTPSYINKADELFAYGEQLLIANWDSSRKVRLLGLAIGKLD 341
>gi|78358660|ref|YP_390109.1| DNA-directed DNA polymerase [Desulfovibrio alaskensis G20]
gi|78221065|gb|ABB40414.1| DNA-directed DNA polymerase [Desulfovibrio alaskensis G20]
Length = 385
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 130/340 (38%), Positives = 189/340 (55%), Gaps = 10/340 (2%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMI--CTANYEARRFGVRAAMPGFIARKLC 165
+H+DMDAF+A+VE L N +L+G+P+ VG A+YEARR+G+R+AMP AR+LC
Sbjct: 1 MHIDMDAFFASVEQLDNAALRGRPVVVGGGKRGVVAAASYEARRYGIRSAMPSGQARRLC 60
Query: 166 PELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEE 225
P +FV +Y S +V ++ P AS+DEAYLD T R G E+A
Sbjct: 61 PHAVFVKGRMHRYKEISAQVMQVLHEFSPLVEQASVDEAYLDATGSARLFGPPE-EMARR 119
Query: 226 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGG 285
+R +V E LTCS GVAP + LAK+ SD+NKP+G FVL D +A F++ LP+ I G
Sbjct: 120 IRAAVREAVSLTCSVGVAPVKFLAKIASDVNKPDGLFVLQPDEVA--GFLAVLPVGDIPG 177
Query: 286 IGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRK 344
+G+ L+ G+ T ++L+ + F F + G+ K
Sbjct: 178 VGRHFAGQLQ-ALGVRTAGDVLRYPETFWQRRFGKGGLGLF-ARAQGIDPRVVEPYTQAK 235
Query: 345 SISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVT 403
S S+E TF T+D+ LL L + AE + + ++ GL GRT+TLK+K A F TR+ T
Sbjct: 236 SESAENTFEEDTDDRELLKTWLLKQAERVGRNQRRMGLSGRTVTLKVKFADFRTVTRSRT 295
Query: 404 LQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNE 442
L SS+ I A+ LL + LP +RLIG+ ++ + E
Sbjct: 296 LAAPTSSTRVIYDTAAALLDEMGLPQKVRLIGVGLSHYAE 335
>gi|303326238|ref|ZP_07356681.1| DNA polymerase IV [Desulfovibrio sp. 3_1_syn3]
gi|345891911|ref|ZP_08842739.1| hypothetical protein HMPREF1022_01399 [Desulfovibrio sp.
6_1_46AFAA]
gi|302864154|gb|EFL87085.1| DNA polymerase IV [Desulfovibrio sp. 3_1_syn3]
gi|345047771|gb|EGW51630.1| hypothetical protein HMPREF1022_01399 [Desulfovibrio sp.
6_1_46AFAA]
Length = 415
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 132/347 (38%), Positives = 189/347 (54%), Gaps = 17/347 (4%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGT--MSMICTANYEARRFGVRAAMPGFIARKLC 165
LH+DMDAF+AAVE + NP L+GKP+ +G ++ TA+YEAR FGV +AMP AR+LC
Sbjct: 3 LHLDMDAFFAAVEQMDNPELRGKPVIIGGGLRGVVSTASYEARVFGVHSAMPIVTARRLC 62
Query: 166 PELIFVPTDFTKYTYYSDLTRKVFCK---YDPNFMAASLDEAYLDITEVCRERGISGIEI 222
P+ IFV + YS+L+R + + P AS+DEAYLD + R G E+
Sbjct: 63 PQGIFV---HGRRHRYSELSRAIMAALGDFSPLVEPASIDEAYLDAAGLTRLFGPLE-EL 118
Query: 223 AEELRTSVYE-EAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
++ V E GLTCS G AP + LAK+CSD+NKP+G F+L P D F+ L +
Sbjct: 119 IARIKDRVAEVTGGLTCSVGAAPVKFLAKICSDVNKPDGVFILRPED---ADDFLLPLEV 175
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
++ G+G+ LRD+ GI T ++ + G+
Sbjct: 176 GRLPGVGRRMVESLRDL-GIVTVAQLRRYSPEFLEKRYGKWGRALYERAYGIDPRPVTPE 234
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R KS S+E TF T D+ L R L AE + A +++ L GRT+TLK+K A F T
Sbjct: 235 RPMKSESAECTFERDTRDREFLVRMLLAHAERVGASLRRHKLSGRTITLKVKFADFRQIT 294
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQFNEDKV 445
R+ TL + +++E I + LL+ P ++RLIGL V+ F E+ V
Sbjct: 295 RSRTLAEATNATETIFETGRELLRELKPAQAVRLIGLGVSGFEENPV 341
>gi|343500609|ref|ZP_08738499.1| DNA polymerase IV [Vibrio tubiashii ATCC 19109]
gi|418477342|ref|ZP_13046475.1| DNA polymerase IV [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342819971|gb|EGU54802.1| DNA polymerase IV [Vibrio tubiashii ATCC 19109]
gi|384575082|gb|EIF05536.1| DNA polymerase IV [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 355
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 198/368 (53%), Gaps = 50/368 (13%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +HVDMD FYAAVE NPS +G+P+AVG ++ T NYEAR+FG+R+AMP
Sbjct: 7 RKIIHVDMDCFYAAVEMRDNPSYRGRPLAVGGHEKQRGVLSTCNYEARKFGIRSAMPTAR 66
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A +LCP+L+ VP Y S R++F +Y SLDEA+LD+TE + +G S
Sbjct: 67 ALQLCPQLLVVPGRMQVYKEVSKQIREIFSRYTSLIEPLSLDEAFLDVTESTQCQG-SAT 125
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IAE +R ++ E LT SAG+AP + LAKV SD+NKPNGQFV+P D +V + LP+
Sbjct: 126 LIAEAIRRDIWHELSLTASAGIAPVKFLAKVASDMNKPNGQFVIPPD--SVQEVVDKLPL 183
Query: 281 RKIGGIGKVTEHILR--------DVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
KI G+GKV+ L D+ N + +L+ G L ++++ S G+
Sbjct: 184 EKIPGVGKVSLEKLHQAGFYTGEDIKNSNYRDLLLRFGRLGASLWNKSH---------GI 234
Query: 333 GSTNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSAD--MQKE 379
+ R RKS+ ERTFS V E+K L+ +L + E S D + K+
Sbjct: 235 DNREVVVERERKSVGVERTFSQNISSYQECWQVIEEK--LFPELEKRLEKASPDKAIIKQ 292
Query: 380 GLRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVT 438
G +KLK A F++ T + Q + + +L S +LK + +RL+GL V
Sbjct: 293 G-------IKLKFADFQLTTIEHIHPQLELEYFKQLL---SDILKRQQGREIRLLGLNVM 342
Query: 439 QFNEDKVR 446
E++ +
Sbjct: 343 LKPEEQAK 350
>gi|254876929|ref|ZP_05249639.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842950|gb|EET21364.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 350
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 126/344 (36%), Positives = 194/344 (56%), Gaps = 21/344 (6%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGF 159
+R +H+DMD F+A VE +NPSLK KP AVG + +I T NY AR +G+ +AMP
Sbjct: 4 TRKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGIHSAMPTA 63
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
IA + CP LI + TDF KY S + R+VF + SLDEAYLD+T+V + S
Sbjct: 64 IAMQKCPNLILLNTDFAKYKAASSIIREVFYTFTDKVEPLSLDEAYLDVTDVAAYKN-SA 122
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ ++ V F+ +LP
Sbjct: 123 TLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQ--VNNFVKNLP 180
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLGSTNT 337
++K+ G+GKV++ L+ + + TC + LQ+ SL V F + + + G+ +
Sbjct: 181 VKKLFGVGKVSQEKLKSM-NVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGIDNREV 237
Query: 338 PQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLKLKTA 393
R RKS+S E T+ ED L KL + + L++ M +E + + +K
Sbjct: 238 NPVRIRKSVSVENTY--LEDLKTLGACLEKLPNLYDKLTSRMTEEHYKSIIGIVVKFTDT 295
Query: 394 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 437
F +T + K + + +LK+ + L + +RLIG+ V
Sbjct: 296 KFN-KTSLTRVAKTL--DKKVLKNLIIELHQKQNYHIRLIGIGV 336
>gi|222151871|ref|YP_002561031.1| DNA polymerase IV [Macrococcus caseolyticus JCSC5402]
gi|222121000|dbj|BAH18335.1| DNA-damage-inducible protein P homolog [Macrococcus caseolyticus
JCSC5402]
Length = 354
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 127/342 (37%), Positives = 187/342 (54%), Gaps = 15/342 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
+ +H+DMDAFYA VE NP LKGKP+ VG S ++ TA+YEAR+FGV +AMP
Sbjct: 2 KRIIHLDMDAFYAQVEQRDNPELKGKPVIVGGKSRNRGVVATASYEARKFGVHSAMPTSR 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A +LCP+ +V F Y S VF Y SLDEAYLDIT + R +
Sbjct: 62 AYQLCPDGHYVSPRFDVYRSVSQQIMNVFKSYTDIVQPLSLDEAYLDITHLVRP-DLGAS 120
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA ++ VYE LTCSAGV+ N+ LAK+ S +NKPNG V+ + V + +LPI
Sbjct: 121 QIAASIKHDVYETTHLTCSAGVSYNKFLAKIASGMNKPNGLTVIHYNN--VQQILDALPI 178
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+ G+GKVTE + I T +++ Q + L F + + + G+G+
Sbjct: 179 GEFPGVGKVTEQKMHK-LKIATGKDLRQLSEIELIEQFGKKGSSLY-NKARGIGTDIIEV 236
Query: 340 ARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKSI E TF+ + D++ + R + E E ++A +Q T+T+K+KT+ FE
Sbjct: 237 ERERKSIGKETTFAHDKNDESYILRVMNEQTEKVAAKLQSMNKVADTITVKIKTSDFESH 296
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRV 437
T+ L + ++ I A VLL +L + +RL+G++V
Sbjct: 297 TKQTKLLDFTDQADKIYATA-VLLYTDLKLENEEIRLVGVQV 337
>gi|423349379|ref|ZP_17327035.1| hypothetical protein HMPREF9156_00573 [Scardovia wiggsiae F0424]
gi|393702927|gb|EJD65129.1| hypothetical protein HMPREF9156_00573 [Scardovia wiggsiae F0424]
Length = 466
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 117/352 (33%), Positives = 192/352 (54%), Gaps = 22/352 (6%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGT--MSMICTANYEARRFGVRAAMPGFIARKLC 165
LH+DMDAFYA+ E + +P L+GKP+ +GT +++ A+YEAR+FGV +AMP A +LC
Sbjct: 24 LHIDMDAFYASCEIVRHPELRGKPVIIGTGRRAVVSAASYEARKFGVNSAMPAATAHRLC 83
Query: 166 PELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEE 225
P+ IF+P D Y S +F + S+DE Y+D++ + EIA
Sbjct: 84 PQGIFLPVDMQYYRSMSSQVFGIFARITDRIEKVSVDECYMDVSGALLQWK-DPREIAAW 142
Query: 226 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGG 285
+R +V G+TCS G+A N+L+AK+ S KP+G ++P R A FI +PIR I G
Sbjct: 143 IRQTVKRRIGVTCSVGIASNKLIAKLASTNAKPDGMLMIPQSRQA--EFIQMMPIRAIPG 200
Query: 286 IGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR 343
IG TE L +GI+T +++ + SL A+ S + A + GLGS+ +
Sbjct: 201 IGPSTERAL-SAWGISTVKQLADMSISSLTSALRSAAHARYLYQAARGLGSSGVVVSAAE 259
Query: 344 KSISSERTFSVTEDKALLYRKLAEI-AEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAV 402
KSI +ERTF+ + L L + +++ ++++ L RT+T+KL+ + ++++
Sbjct: 260 KSIGAERTFAEDTNSWLKISGLLRWCCDDVASTLRRKKLYARTVTVKLRLSDLSHISKSL 319
Query: 403 TLQKYISSSEDILKHASVLLK-------------AELPVSLRLIGLRVTQFN 441
T+ + ++S+ I + LL AE+P +RL G+ + F+
Sbjct: 320 TVTQPMNSAAQIYPISRQLLARLLKMQQPEKGKDAEVPRLIRLAGVSTSHFS 371
>gi|336414991|ref|ZP_08595334.1| DNA polymerase IV [Bacteroides ovatus 3_8_47FAA]
gi|335941852|gb|EGN03703.1| DNA polymerase IV [Bacteroides ovatus 3_8_47FAA]
Length = 363
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 129/353 (36%), Positives = 200/353 (56%), Gaps = 26/353 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEARR+GVR+AM A
Sbjct: 4 RKIIHIDMDAFYASVEQRDNPELRGKPLAVGHAEERGVVAAASYEARRYGVRSAMASQKA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+LIFVP Y S ++F +Y SLDEA+LD+TE ++ ++ ++
Sbjct: 64 KRLCPQLIFVPGRMDVYKSVSRQIHEIFHEYTDIIEPLSLDEAFLDVTENKKDISLA-VD 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+E++ + E+ L SAGV+ N+ LAK+ SD KP+G + ++ + FI+ LPI
Sbjct: 123 IAKEIKQKIREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPEQ--ALDFIARLPIE 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+G VT + + GI+ + L+K SL L A F + A ++ G+
Sbjct: 181 SFWGVGPVTAKKMH-LLGIHNGLQ-LRKCSLEMLTAHFGKAGALYY-ECSRGIDERPVEA 237
Query: 340 ARFRKSISSERTFSVTEDKALLYR-----KLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
R RKSI ERT ++ +L R +L +A L +Q++ +G TLTLK+K
Sbjct: 238 IRIRKSIGCERTL----ERDILARSSVIIELYHVAVELIERLQRKDFKGNTLTLKIKFHD 293
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKA----ELPVSLRLIGLRVTQFNED 443
F TR++T + +++ + +L A LLK+ + P+ RLIGL V+ E+
Sbjct: 294 FSQITRSLTQSQELTTLDRVLPLAKELLKSVEYEQHPI--RLIGLSVSNPKEE 344
>gi|339479861|gb|ABE96329.1| DNA polymerase IV [Bifidobacterium breve UCC2003]
Length = 424
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 191/358 (53%), Gaps = 22/358 (6%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGT--MSMICTANYEARRFGVRAAMPGFIARKLC 165
LH+DMDAFYA++E NP LKGKP+ +GT S++ A+YEARR+G+ +AMP A +LC
Sbjct: 24 LHIDMDAFYASLEVARNPGLKGKPVIIGTGPRSVVSAASYEARRYGINSAMPAARAHQLC 83
Query: 166 PELIFVPTDFTKYTYYSD-LTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 224
P+ +F+P D Y S + +VF F S+DE Y+D++ E I
Sbjct: 84 PDGVFLPVDMAYYRMMSHRIMHEVFLTITDQFEQVSVDEGYMDVSGALLEWDKPS-AIGA 142
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 284
+R V E +TCS G+A N+L+AK+ S KPNG ++P R A F+ +P+R I
Sbjct: 143 WIRQQVAERFNVTCSVGIACNKLVAKMASTNAKPNGMLLIPAARSA--QFVQMMPLRGIP 200
Query: 285 GIGKVTEHILRDVFGINTCEEMLQ--KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARF 342
GIG E L + +G+++ E+ Q K +L+ A S + A + GL S R
Sbjct: 201 GIGPSLEKRL-NAWGVHSVAELAQMDKAALIQATGSPAAARGLWAASHGLDSREIATTRE 259
Query: 343 RKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRA 401
KSI SERT + T D ++ R L + ++ ++++GL RTLT+KL+ A +TR+
Sbjct: 260 EKSIGSERTLTEDTRDMHIVCRLLRSACDEVARTLRRKGLVARTLTVKLRFADLSYQTRS 319
Query: 402 VTLQKYISSSEDI----LKHASVLL--------KAELPVSLRLIGLRVTQFNEDKVRA 447
T+++ ++ + ++ ++L LP +RL G+ + +E A
Sbjct: 320 FTMEQPTDTASTLYPECVRQLKIMLGIPANAEPTTPLPKLIRLAGMSTSSLSEAHATA 377
>gi|237721489|ref|ZP_04551970.1| DNA damage-inducible protein [Bacteroides sp. 2_2_4]
gi|229449285|gb|EEO55076.1| DNA damage-inducible protein [Bacteroides sp. 2_2_4]
Length = 363
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 127/350 (36%), Positives = 200/350 (57%), Gaps = 20/350 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEARR+GVR+AM A
Sbjct: 4 RKIIHIDMDAFYASVEQRDNPELRGKPLAVGHAEERGVVAAASYEARRYGVRSAMASQKA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+LIFVP Y S ++F +Y SLDEA+LD+TE ++ ++ ++
Sbjct: 64 KRLCPQLIFVPGRMDVYKSVSRQIHEIFHEYTDIIEPLSLDEAFLDVTENKKDISLA-VD 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+E++ + E+ L SAG++ N+ LAK+ SD KP+G + ++ + FI+ LPI
Sbjct: 123 IAKEIKQKIREQLNLVASAGISYNKFLAKIASDYRKPDGLCTIHPEQ--ALDFIARLPIE 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+G VT + + GI+ + L+K SL L A F + A ++ G+
Sbjct: 181 SFWGVGPVTAKKMH-LLGIHNGLQ-LRKCSLEMLTAHFGKAGALYY-ECSRGIDERPVEA 237
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKSI ERT ++ +++ +L +A L +Q++ +G TLTLK+K F
Sbjct: 238 IRIRKSIGCERTLERDISAHSSVII-ELYHVAVELIERLQRKDFKGNTLTLKIKFHDFSQ 296
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKA----ELPVSLRLIGLRVTQFNED 443
TR++T + +++ + IL A LLK+ + P+ RLIGL V+ E+
Sbjct: 297 ITRSLTQSQELTTLDRILPLAKELLKSVEYEQHPI--RLIGLSVSNPREE 344
>gi|373956101|ref|ZP_09616061.1| DNA polymerase IV [Mucilaginibacter paludis DSM 18603]
gi|373892701|gb|EHQ28598.1| DNA polymerase IV [Mucilaginibacter paludis DSM 18603]
Length = 368
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 128/364 (35%), Positives = 197/364 (54%), Gaps = 14/364 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-----MSMICTANYEARRFGVRAAMPGF 159
R +H+DMDAFYA+VE N +GKP+ VG ++ TA+YEAR+FG+R+AMP
Sbjct: 10 RKIIHIDMDAFYASVEQRDNEEYRGKPIVVGGPHEGRGGVVATASYEARKFGIRSAMPSK 69
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
A +LCP IFV F Y S R++F +Y SLDEAYLD+T G S
Sbjct: 70 KALQLCPHAIFVRPRFAVYKEVSQQIREIFSRYTDLIEPLSLDEAYLDVTNDKLNIG-SA 128
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 278
IEIA++++ ++ +E LT SAGV+ N+ +AK+ SDINKPNG +F+ P+ + F+ L
Sbjct: 129 IEIAKQIKQAIQDELRLTASAGVSINKFVAKIASDINKPNGLKFIGPS---GIENFMELL 185
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
P+ K G+GKVT ++ + G++T ++ + F+ + GL +
Sbjct: 186 PVEKFFGVGKVTAEKMKKM-GLHTGADLKKLTEDEMHRHFGKAGRFYYQIVRGLDNREVQ 244
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R KS+ +E TF+ A + +L +IA ++ +++ L+GRT+TLK+K + F+
Sbjct: 245 PHRETKSMGAEDTFAYDLTTLAEMNAELDKIAVTVANRLERYQLKGRTVTLKVKYSDFKQ 304
Query: 398 RTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 455
TR + I+ E I A LL E +RL+G+ ++ F E +R D
Sbjct: 305 ITRNQSSAAPIADLESITATAKQLLFTSFEEGQKVRLLGISLSNFGEVILRQKQDKQTGQ 364
Query: 456 LTNF 459
L F
Sbjct: 365 LELF 368
>gi|347549369|ref|YP_004855697.1| putative DNA-damage-inducible protein dinP [Listeria ivanovii
subsp. ivanovii PAM 55]
gi|346982440|emb|CBW86436.1| Putative DNA-damage-inducible protein dinP (DNA polymerase IV (Pol
IV)) [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 356
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 127/348 (36%), Positives = 191/348 (54%), Gaps = 15/348 (4%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVSTCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + + Y S R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TKQAVKLCPNGIFIHGNMSHYVEVSGQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 276
S IA +++ ++Y E GLT SAGV+ N+ +AK+ SD +KP G V+ D F+
Sbjct: 120 KSATLIARDIQQTIYRELGLTASAGVSFNKFIAKIASDFHKPAGITVVSPDEAE--AFLE 177
Query: 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
+P+ K G+GKVT L + GI T + L+K S + + L + S N
Sbjct: 178 KIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKQGYHLYRHVRGRSNN 235
Query: 337 TPQA-RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
R RKS+ E TF D+ +L + L A+ + + K G+T+ LKL+ +
Sbjct: 236 VVNPHRDRKSVGKETTFEFNILDERILEQNLMIFAKKVEERLTKLQKHGKTIVLKLRYSD 295
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
F T+ +TL +YI ++ I + A++LL+ S+RLIGL VT
Sbjct: 296 FTTVTKRLTLNEYIHDAKQIYQAAALLLRETYTGKESIRLIGLTVTNL 343
>gi|254369305|ref|ZP_04985317.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC022]
gi|157122255|gb|EDO66395.1| DNA polymerase IV [Francisella tularensis subsp. holarctica FSC022]
Length = 349
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 194/343 (56%), Gaps = 21/343 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+ VE +NPSLK KP AVG + +I T NY AR +GVR+AMP I
Sbjct: 5 RKIIHIDMDYFFTQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGVRSAMPTAI 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E S
Sbjct: 65 AMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEYKNSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+ LP+
Sbjct: 124 LIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQ--VDSFVKDLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLGSTNTP 338
+K+ G+GKV++ L+ + G+ TC + LQ+ SL V F + + + G+ +
Sbjct: 182 KKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGIDNREVN 238
Query: 339 QARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLKLKTAS 394
R RKSIS E T+ ED L KL + + L++ M +E + + +K
Sbjct: 239 PVRIRKSISVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHYKSIIGIVVKFTDTK 296
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 437
F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 297 FN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>gi|422349816|ref|ZP_16430705.1| hypothetical protein HMPREF9465_01595 [Sutterella wadsworthensis
2_1_59BFAA]
gi|404658025|gb|EKB30905.1| hypothetical protein HMPREF9465_01595 [Sutterella wadsworthensis
2_1_59BFAA]
Length = 390
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 132/351 (37%), Positives = 192/351 (54%), Gaps = 16/351 (4%)
Query: 97 LEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVR 153
L R++SR +HVDMDAFYA+VE P L+G+P+AVG ++ TA+YEARRFGV
Sbjct: 27 LTLVRNVSRRIVHVDMDAFYASVEQRDRPELRGRPIAVGHAQGRGVVATASYEARRFGVH 86
Query: 154 AAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR 213
+AMP AR+LCPELIFV + Y S ++F +Y SLDEA+LD+T
Sbjct: 87 SAMPSSRARELCPELIFVEGRMSHYKAVSCQIHEIFRRYTDVIEPISLDEAFLDVT--VN 144
Query: 214 ERGIS-GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVM 272
++G++ G+E+A ++ ++ EE GL SAGV+ N+ LAKV SD KP+G + +R +
Sbjct: 145 KQGLALGVEVAVAIKRAIREELGLVASAGVSYNKFLAKVASDWRKPDGLCTIHPER--AI 202
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLG 331
FI LP+ G+G T L GI T E+ S L F S DF+ V G
Sbjct: 203 DFIDRLPVEAFWGVGPATAARL-HALGIRTAPELRAVPLSDLMRHFGQSGYDFYRFV-RG 260
Query: 332 LGSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 390
+ +R RKS+ ERTF D L + E+A L+ + + G TL+LK+
Sbjct: 261 IDDRPVRSSRVRKSVGCERTFERDVRDPVRLRGIIGELAAELAFRLGRADFAGSTLSLKV 320
Query: 391 KTASFEVRTRAVTLQ-KYISSSEDILKHASVLLKAELPV---SLRLIGLRV 437
++ F RTR+V + Y +++ L + L A + + +RL+GL V
Sbjct: 321 RSHDFTTRTRSVAAEVPYDANAMTRLAEDACRLLAGMEIPKGGVRLLGLAV 371
>gi|290476280|ref|YP_003469184.1| DNA polymerase IV [Xenorhabdus bovienii SS-2004]
gi|289175617|emb|CBJ82420.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Xenorhabdus bovienii SS-2004]
Length = 370
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 178/315 (56%), Gaps = 21/315 (6%)
Query: 98 EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVR 153
EA R R +H+DMD F+AA+E NPSL+ P+AVG + +I TANY AR FGVR
Sbjct: 14 EACRGEMRKIIHIDMDCFFAAIEMRDNPSLRDIPIAVGGSADRRGVISTANYPARLFGVR 73
Query: 154 AAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR 213
+AM +A KLCP+L +P Y S R++F +Y SLDEAYLD+T+ C+
Sbjct: 74 SAMSTAMALKLCPQLKVIPGRMASYKEVSQHIRQIFSRYTELIEPLSLDEAYLDVTD-CQ 132
Query: 214 ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMT 273
S IA+++R +++E LT SAGVAP R LAK+ SDINKPNGQ+V+ +++ V
Sbjct: 133 HCHGSATLIAQQIRQVIFDELQLTASAGVAPIRFLAKIASDINKPNGQYVISPEQVEV-- 190
Query: 274 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLG 331
F+ SLP+RKI G+GKVT L D+ G+ TC ++ K +L+ + A + S G
Sbjct: 191 FVKSLPLRKIPGVGKVTSKRLSDM-GLETCADVQNYDKVALIKKLGKFGLALWERS--HG 247
Query: 332 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE------GLRGRT 385
+ R RKS+ E+T + + +R E+ E L +++K LR
Sbjct: 248 IDDRQISPDRLRKSVGVEKTLAQDIHE---WRDCVELIEKLYPELEKRLGKVKPDLRIAR 304
Query: 386 LTLKLKTASFEVRTR 400
+KLK F++ T+
Sbjct: 305 QGIKLKFDDFQLTTQ 319
>gi|77408795|ref|ZP_00785524.1| DNA-damage-inducible protein P [Streptococcus agalactiae COH1]
gi|421147957|ref|ZP_15607629.1| DNA polymerase IV [Streptococcus agalactiae GB00112]
gi|77172576|gb|EAO75716.1| DNA-damage-inducible protein P [Streptococcus agalactiae COH1]
gi|401685295|gb|EJS81303.1| DNA polymerase IV [Streptococcus agalactiae GB00112]
Length = 364
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 196/350 (56%), Gaps = 20/350 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+A+VE NPSLKGKP+ +G+ ++ T NYEAR+FGV +
Sbjct: 9 DTSRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY R +F KY S+DEAYLD+TE +
Sbjct: 69 AMSSKEAYERCPQAIFISGNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVTE--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S +++A+ ++ ++ + LTCSAG++ N+ LAK+ SD KP G F+LP+
Sbjct: 127 MGIKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTFILPDQ---AQ 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLG 331
F+ LPI K G+GK + L G+ T E++L + L +F D + G
Sbjct: 184 DFLKPLPIEKFHGVGKRSVEKLH-ALGVYTGEDLLSLSEISLIDMFGRFGYDLYRK-ARG 241
Query: 332 LGSTNTPQARFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 390
+ ++ R RKSI SE+T+ + ++A + ++++ + + A ++K G+T+ LK+
Sbjct: 242 INASPVKPNRVRKSIGSEKTYGKLLYNEADIKAEISKNVQRVVASLEKNKKVGKTIVLKV 301
Query: 391 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVT 438
+ A FE T+ +TL++Y + I + A + E +RL+G+ VT
Sbjct: 302 RYADFETLTKRMTLEEYTQDFQIIDQVAKAIFDTLEESVFGIRLLGVTVT 351
>gi|88812949|ref|ZP_01128192.1| DNA polymerase IV [Nitrococcus mobilis Nb-231]
gi|88789727|gb|EAR20851.1| DNA polymerase IV [Nitrococcus mobilis Nb-231]
Length = 363
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 120/315 (38%), Positives = 176/315 (55%), Gaps = 10/315 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDA+YA+VE +P L GKP+ V GT S++C A+YEAR+FGVR+AMP A
Sbjct: 6 RKIVHIDMDAYYASVEQRDDPRLNGKPVIVAWGGTRSVVCAASYEARKFGVRSAMPAAQA 65
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGI 220
+LCP+ IFVP DF +Y S R +F ++ SLDEAYLD+T ++G+ S
Sbjct: 66 ERLCPQAIFVPPDFIRYKAVSRQIRAIFSRHTDLIEPLSLDEAYLDVT--VNKQGLGSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+ +R S+ E LT SAGVA N+ LAK+ SD +KPNG V+ + A F++SLP+
Sbjct: 124 EVAKAIRASIRNELSLTASAGVAANKFLAKIASDWHKPNGLLVVRPHQAA--AFLTSLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
++ G+GKVT L + GI T E+ + + LG+
Sbjct: 182 TRLPGVGKVTGKRLAQI-GIATVGELRTAPLPVLECRFGQWGRRLHELSLGIDERPVVTQ 240
Query: 341 RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR-GRTLTLKLKTASFEVRT 399
R +S+E TF L + ++E +K+ R RT+ LKLKTA F+ T
Sbjct: 241 RPALQVSAEDTFESDLRLDELEPHIRRLSEKTWRSYRKQPTRVARTIVLKLKTAQFKTLT 300
Query: 400 RAVTLQKYISSSEDI 414
R++TL +++ D+
Sbjct: 301 RSLTLPTPPATATDV 315
>gi|160887214|ref|ZP_02068217.1| hypothetical protein BACOVA_05231 [Bacteroides ovatus ATCC 8483]
gi|262408710|ref|ZP_06085256.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|293369209|ref|ZP_06615803.1| DNA polymerase IV [Bacteroides ovatus SD CMC 3f]
gi|294643992|ref|ZP_06721776.1| DNA polymerase IV [Bacteroides ovatus SD CC 2a]
gi|294807269|ref|ZP_06766083.1| DNA polymerase IV [Bacteroides xylanisolvens SD CC 1b]
gi|298481536|ref|ZP_06999728.1| ATP-NAD kinase [Bacteroides sp. D22]
gi|336406616|ref|ZP_08587266.1| DNA polymerase IV [Bacteroides sp. 1_1_30]
gi|345511231|ref|ZP_08790779.1| DNA polymerase IV [Bacteroides sp. D1]
gi|423212421|ref|ZP_17198950.1| DNA polymerase IV [Bacteroides xylanisolvens CL03T12C04]
gi|423288646|ref|ZP_17267497.1| DNA polymerase IV [Bacteroides ovatus CL02T12C04]
gi|156107625|gb|EDO09370.1| putative DNA polymerase IV [Bacteroides ovatus ATCC 8483]
gi|229444412|gb|EEO50203.1| DNA polymerase IV [Bacteroides sp. D1]
gi|262353575|gb|EEZ02669.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292635792|gb|EFF54290.1| DNA polymerase IV [Bacteroides ovatus SD CMC 3f]
gi|292640685|gb|EFF58919.1| DNA polymerase IV [Bacteroides ovatus SD CC 2a]
gi|294445567|gb|EFG14220.1| DNA polymerase IV [Bacteroides xylanisolvens SD CC 1b]
gi|295086999|emb|CBK68522.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Bacteroides xylanisolvens XB1A]
gi|298272400|gb|EFI13969.1| ATP-NAD kinase [Bacteroides sp. D22]
gi|335933875|gb|EGM95874.1| DNA polymerase IV [Bacteroides sp. 1_1_30]
gi|392669844|gb|EIY63330.1| DNA polymerase IV [Bacteroides ovatus CL02T12C04]
gi|392694867|gb|EIY88093.1| DNA polymerase IV [Bacteroides xylanisolvens CL03T12C04]
Length = 363
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 127/349 (36%), Positives = 198/349 (56%), Gaps = 18/349 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEARR+GVR+AM A
Sbjct: 4 RKIIHIDMDAFYASVEQRDNPELRGKPLAVGHAEERGVVAAASYEARRYGVRSAMASQKA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+LIFVP Y S ++F +Y SLDEA+LD+TE ++ ++ ++
Sbjct: 64 KRLCPQLIFVPGRMDVYKSVSRQIHEIFHEYTDIIEPLSLDEAFLDVTENKKDISLA-VD 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+E++ + E+ L SAGV+ N+ LAK+ SD KP+G + ++ + FI+ LPI
Sbjct: 123 IAKEIKQKIREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPEQ--ALDFIARLPIE 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+G VT + + GI+ + L+K SL L A F + A ++ G+
Sbjct: 181 SFWGVGPVTAKKMH-LLGIHNGLQ-LRKCSLEMLTAHFGKAGALYY-ECSRGIDERPVEA 237
Query: 340 ARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKSI ERT ++ + +L +A L +Q++ +G TLTLK+K F
Sbjct: 238 IRIRKSIGCERTLERDISARSSVIIELYHVAVELIERLQRKDFKGNTLTLKIKFHDFSQI 297
Query: 399 TRAVTLQKYISSSEDILKHASVLLKA----ELPVSLRLIGLRVTQFNED 443
TR++T + +++ + +L A LLK+ + P+ RLIGL V+ E+
Sbjct: 298 TRSLTQSQELTTLDRVLPLAKELLKSVEFEQHPI--RLIGLSVSNPKEE 344
>gi|210620712|ref|ZP_03292198.1| hypothetical protein CLOHIR_00141 [Clostridium hiranonis DSM 13275]
gi|210155213|gb|EEA86219.1| hypothetical protein CLOHIR_00141 [Clostridium hiranonis DSM 13275]
Length = 326
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 187/326 (57%), Gaps = 14/326 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +H+DMDAFYA++E NPSLKGKP+ VG ++ T +YEAR++G+ +AMP
Sbjct: 4 RKIIHIDMDAFYASIEQRDNPSLKGKPLVVGGSPHGRGVVSTCSYEARKYGIHSAMPCKE 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A CP +FV F Y S+ R +F +Y SLDEA+LD+TE +++ S
Sbjct: 64 AYIRCPYAVFVRPRFYVYKEVSNQIRNIFHRYTDLVEPLSLDEAFLDVTE-NKKKIKSAT 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+ ++ + E GLT SAGV+ N+ +AK+ SD KPNG V+ D V F+ +LP+
Sbjct: 123 IIAKLIKEDIKRETGLTASAGVSYNKFVAKLASDYQKPNGLTVITEDN--VQEFLDTLPV 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP 338
+K G+GKVTE +L++ GINT + L+ SL L +F + + + + G+ +
Sbjct: 181 KKFFGVGKVTERVLKNN-GINTGYD-LRNTSLEKLEKIFKNRGLELY-NFARGIDNRPVN 237
Query: 339 QARFRKSISSERTFSVTE--DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKSI +E T + D A L E+ E ++ M KE +T+TLK+K F+
Sbjct: 238 PTRIRKSIGAETTLIENKNIDDAETVMILDELCEEVAERMAKEDKVAKTITLKIKFEDFK 297
Query: 397 VRTRAVTLQKYISSSEDILKHASVLL 422
TR++++ YI + +DI +A+ LL
Sbjct: 298 TITRSLSVNDYIRNYDDIRFYAAELL 323
>gi|21283565|ref|NP_646653.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MW2]
gi|49486714|ref|YP_043935.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSSA476]
gi|57652116|ref|YP_186780.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus COL]
gi|151222045|ref|YP_001332867.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str. Newman]
gi|221141185|ref|ZP_03565678.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253729654|ref|ZP_04863819.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|258422972|ref|ZP_05685871.1| DNA-damage-inducible protein P [Staphylococcus aureus A9635]
gi|258451039|ref|ZP_05699075.1| ImpB/MucB/SamB family protein [Staphylococcus aureus A5948]
gi|262049939|ref|ZP_06022799.1| hypothetical protein SAD30_1409 [Staphylococcus aureus D30]
gi|262053189|ref|ZP_06025347.1| hypothetical protein SA930_1194 [Staphylococcus aureus 930918-3]
gi|282917242|ref|ZP_06324997.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus D139]
gi|282923234|ref|ZP_06330915.1| DNA polymerase IV [Staphylococcus aureus A9765]
gi|283771045|ref|ZP_06343936.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus H19]
gi|284024941|ref|ZP_06379339.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 132]
gi|294849444|ref|ZP_06790186.1| DNA polymerase IV [Staphylococcus aureus A9754]
gi|297208923|ref|ZP_06925327.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|300913020|ref|ZP_07130458.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH70]
gi|304379081|ref|ZP_07361828.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|379015099|ref|YP_005291335.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VC40]
gi|379021655|ref|YP_005298317.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M013]
gi|384548185|ref|YP_005737438.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ED133]
gi|384870436|ref|YP_005753150.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus T0131]
gi|387143483|ref|YP_005731876.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
TW20]
gi|387780958|ref|YP_005755756.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|415689555|ref|ZP_11452840.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus CGS01]
gi|417649076|ref|ZP_12298882.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21189]
gi|417654248|ref|ZP_12303972.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21193]
gi|417797059|ref|ZP_12444259.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21305]
gi|417890486|ref|ZP_12534561.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21200]
gi|417897571|ref|ZP_12541501.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21235]
gi|417902413|ref|ZP_12546279.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21266]
gi|418278482|ref|ZP_12892363.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21178]
gi|418282422|ref|ZP_12895196.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21202]
gi|418286830|ref|ZP_12899468.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21209]
gi|418306652|ref|ZP_12918429.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21194]
gi|418316783|ref|ZP_12928216.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21340]
gi|418317606|ref|ZP_12929023.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21232]
gi|418319965|ref|ZP_12931331.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
VCU006]
gi|418561209|ref|ZP_13125706.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21252]
gi|418570061|ref|ZP_13134360.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21283]
gi|418579821|ref|ZP_13143912.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418641460|ref|ZP_13203670.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-24]
gi|418648524|ref|ZP_13210566.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-88]
gi|418651462|ref|ZP_13213463.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-91]
gi|418659923|ref|ZP_13221575.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-111]
gi|418871769|ref|ZP_13426138.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-125]
gi|418875828|ref|ZP_13430080.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418889716|ref|ZP_13443845.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418904230|ref|ZP_13458269.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418906834|ref|ZP_13460857.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418912523|ref|ZP_13466501.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|418926310|ref|ZP_13480207.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418929243|ref|ZP_13483128.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418934888|ref|ZP_13488706.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418949246|ref|ZP_13501503.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-157]
gi|418950965|ref|ZP_13503097.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-160]
gi|418955346|ref|ZP_13507288.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-189]
gi|419773959|ref|ZP_14299943.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CO-23]
gi|424785854|ref|ZP_18212650.1| DNA polymerase IV [Staphylococcus aureus CN79]
gi|440708430|ref|ZP_20889095.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21282]
gi|443639343|ref|ZP_21123354.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21196]
gi|448741043|ref|ZP_21723015.1| DNA polymerase IV [Staphylococcus aureus KT/314250]
gi|448744750|ref|ZP_21726633.1| DNA polymerase IV [Staphylococcus aureus KT/Y21]
gi|22095607|sp|P58964.1|DPO4_STAAW RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81649035|sp|Q6G838.1|DPO4_STAAS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81694161|sp|Q5HEM7.1|DPO4_STAAC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044608|sp|A6QIC3.1|DPO4_STAAE RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21205006|dbj|BAB95701.1| MW1836 [Staphylococcus aureus subsp. aureus MW2]
gi|49245157|emb|CAG43623.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57286302|gb|AAW38396.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
COL]
gi|150374845|dbj|BAF68105.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str. Newman]
gi|253726595|gb|EES95324.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257846759|gb|EEV70774.1| DNA-damage-inducible protein P [Staphylococcus aureus A9635]
gi|257861281|gb|EEV84093.1| ImpB/MucB/SamB family protein [Staphylococcus aureus A5948]
gi|259158916|gb|EEW44002.1| hypothetical protein SA930_1194 [Staphylococcus aureus 930918-3]
gi|259161947|gb|EEW46529.1| hypothetical protein SAD30_1409 [Staphylococcus aureus D30]
gi|269941366|emb|CBI49763.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282318869|gb|EFB49224.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus D139]
gi|282593145|gb|EFB98144.1| DNA polymerase IV [Staphylococcus aureus A9765]
gi|283459639|gb|EFC06730.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus H19]
gi|294823581|gb|EFG40008.1| DNA polymerase IV [Staphylococcus aureus A9754]
gi|296886413|gb|EFH25342.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|298695234|gb|ADI98456.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ED133]
gi|300885798|gb|EFK81005.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH70]
gi|304342316|gb|EFM08208.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|315196234|gb|EFU26589.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus CGS01]
gi|329314571|gb|AEB88984.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus T0131]
gi|329728616|gb|EGG65046.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21189]
gi|329731471|gb|EGG67834.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21193]
gi|334267648|gb|EGL86106.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21305]
gi|341839478|gb|EGS81059.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21235]
gi|341843119|gb|EGS84350.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21266]
gi|341854960|gb|EGS95820.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21200]
gi|344178060|emb|CCC88542.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830964|gb|AEV78942.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M013]
gi|365165527|gb|EHM57313.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21209]
gi|365170533|gb|EHM61531.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21202]
gi|365171887|gb|EHM62635.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21178]
gi|365228696|gb|EHM69875.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
VCU006]
gi|365240493|gb|EHM81267.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21340]
gi|365245156|gb|EHM85805.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21232]
gi|365246446|gb|EHM86998.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21194]
gi|371969684|gb|EHO87124.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21252]
gi|371985110|gb|EHP02198.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21283]
gi|374363796|gb|AEZ37901.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VC40]
gi|375019260|gb|EHS12821.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-24]
gi|375025433|gb|EHS18837.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-91]
gi|375025967|gb|EHS19358.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-88]
gi|375033508|gb|EHS26693.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-111]
gi|375367884|gb|EHS71822.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-125]
gi|375369487|gb|EHS73365.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-157]
gi|375371200|gb|EHS74987.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-189]
gi|375374974|gb|EHS78585.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-160]
gi|377693700|gb|EHT18069.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377721258|gb|EHT45396.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377736928|gb|EHT60941.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377740310|gb|EHT64307.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377741462|gb|EHT65450.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377751523|gb|EHT75452.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377762302|gb|EHT86169.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377769119|gb|EHT92896.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|377769370|gb|EHT93140.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|383972231|gb|EID88279.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CO-23]
gi|421955823|gb|EKU08157.1| DNA polymerase IV [Staphylococcus aureus CN79]
gi|436504953|gb|ELP40917.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21282]
gi|443407154|gb|ELS65714.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21196]
gi|445548151|gb|ELY16405.1| DNA polymerase IV [Staphylococcus aureus KT/314250]
gi|445561950|gb|ELY18136.1| DNA polymerase IV [Staphylococcus aureus KT/Y21]
Length = 356
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 192/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDILMTLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI ++ +K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|47096619|ref|ZP_00234207.1| DNA-damage-inducible protein P, putative [Listeria monocytogenes
str. 1/2a F6854]
gi|254912534|ref|ZP_05262546.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254936861|ref|ZP_05268558.1| DNA polymerase IV [Listeria monocytogenes F6900]
gi|386047627|ref|YP_005965959.1| DNA polymerase IV [Listeria monocytogenes J0161]
gi|47015004|gb|EAL05949.1| DNA-damage-inducible protein P, putative [Listeria monocytogenes
serotype 1/2a str. F6854]
gi|258609456|gb|EEW22064.1| DNA polymerase IV [Listeria monocytogenes F6900]
gi|293590519|gb|EFF98853.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|345534618|gb|AEO04059.1| DNA polymerase IV [Listeria monocytogenes J0161]
Length = 356
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 193/351 (54%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYHLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|417903965|ref|ZP_12547796.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21269]
gi|341848294|gb|EGS89459.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21269]
Length = 356
Score = 192 bits (488), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 192/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDILMTLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI ++ +K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHDK-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|429740249|ref|ZP_19273948.1| putative DNA polymerase IV [Prevotella saccharolytica F0055]
gi|429153802|gb|EKX96570.1| putative DNA polymerase IV [Prevotella saccharolytica F0055]
Length = 363
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 136/351 (38%), Positives = 193/351 (54%), Gaps = 22/351 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +P+L+GKP+AV S++ TA+YEARRFG+ +AMP A
Sbjct: 8 RKIIHVDMDAFYASVEQRDDPTLRGKPIAVCRDTCRSVLTTASYEARRFGIHSAMPVTRA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+K+CPELI VP DF KY S +F Y SLDEA+LD+T+ ++ ++
Sbjct: 68 KKMCPELIIVPPDFAKYKAVSSQVHAIFHDYTDIIEPLSLDEAFLDVTQNKLNIPLA-VD 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+++R + E LT SAGV+ N+ LAKV SD KP+G V+ DR FIS+L I
Sbjct: 127 IAKQIRQRIRNELHLTASAGVSYNKFLAKVASDYRKPDGLTVIHPDRAK--DFISNLRIE 184
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+G T H + + GI + L++ SL L F A ++ + G+
Sbjct: 185 DFWGVGGKTAHTMHRM-GIFIGYD-LRRYSLQRLMQEFGKMGAVYY-NFARGIDLRPVEA 241
Query: 340 ARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LSADMQKEGLRGRTLTLKLKTASFE 396
RKS+ E+TF ED + + + E+ + L ++K +GRTLTLK+K F
Sbjct: 242 FSVRKSVGCEQTF--MEDTDIPSKLIIELYHLVLELVERIKKAKFKGRTLTLKVKFHDFT 299
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVTQFNED 443
TR++T EDIL A LLK PV RL+GL V+ +E+
Sbjct: 300 QITRSITRSSDFCLKEDILPAAKALLKEVEYTNHPV--RLLGLSVSHPHEE 348
>gi|386389668|ref|ZP_10074481.1| DNA polymerase IV [Haemophilus paraphrohaemolyticus HK411]
gi|385695171|gb|EIG25737.1| DNA polymerase IV [Haemophilus paraphrohaemolyticus HK411]
Length = 359
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 152/261 (58%), Gaps = 16/261 (6%)
Query: 100 TRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAA 155
T +R +H+DMD FYAAVE NPSLKGKP+AVG + ++ T NYEAR+FG+ +A
Sbjct: 3 TEQKTRKIIHIDMDCFYAAVEMRENPSLKGKPVAVGGKANQRGVLTTCNYEARKFGLHSA 62
Query: 156 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 215
M A KLCP LI +P + Y S ++F +Y SLDEAYLD+T+ C+
Sbjct: 63 MSTATAFKLCPNLILLPVNMPLYKLVSAQIHQIFRRYTQIIEPLSLDEAYLDVTD-CKLH 121
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
S IAE +R ++++E LT SAGVAP + LAK+ SD NKPNGQFV+P + V F+
Sbjct: 122 SGSATWIAENIRQAIWDELHLTASAGVAPLKFLAKIASDQNKPNGQFVIPPEE--VQNFV 179
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC----AVFSHSTADFFLSVGLG 331
+LP++KI G+GKVTE L + G+ TC+++ Q + F +F + +
Sbjct: 180 KNLPLKKIPGVGKVTEEKLAQM-GLLTCQDVQQNSQAMIYQEFGKFGQRLWNFCHGIDIR 238
Query: 332 LGSTNTPQARFRKSISSERTF 352
+ P RKS++ E T
Sbjct: 239 ELEVDRP----RKSLAVENTL 255
>gi|148263204|ref|YP_001229910.1| DNA-directed DNA polymerase [Geobacter uraniireducens Rf4]
gi|146396704|gb|ABQ25337.1| DNA-directed DNA polymerase [Geobacter uraniireducens Rf4]
Length = 408
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 130/360 (36%), Positives = 198/360 (55%), Gaps = 28/360 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R+ LH+DM+AF+A+VE ++P+L+GKP+AV ++I TA+YEAR +GV+ M F A
Sbjct: 4 RTILHIDMNAFFASVEQQTDPALRGKPVAVTGKSARTIILTASYEARGYGVKTGMRIFEA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
R+ CP+LI VP + +YT S + Y P S+DEA+LDIT R G S
Sbjct: 64 RQKCPDLICVPGNNRRYTSISRRIMAMLHDYTPLVEVFSIDEAFLDITGSLRLFG-SASR 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA ++ + GLTCS G+APN+LLAK+ S++ KP+G V+ +R+A + + +LPIR
Sbjct: 123 IAHLIKARIRHRFGLTCSIGIAPNKLLAKLASEMKKPDGLTVIHQERVAAI--LENLPIR 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVG-----LGLGSTN 336
++ GIG+ TE L + GI TC E+ G + + F VG +GLG +
Sbjct: 181 ELCGIGRQTERTL-TLLGIRTCGEL---GRFPVHILTRR----FGVVGEKLHRMGLGIDD 232
Query: 337 TP-----QARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 389
P A KS+ T +TE +L L +AEM+ +K + G+T+TL
Sbjct: 233 APVVPAEAAPDVKSVGHSTTLERDITERGEILA-ILLRLAEMVGRRARKHAVAGKTVTLT 291
Query: 390 LKTASFEVRTRAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFNEDKVRAP 448
++ A F + T Y + S+DI + A +LL +L +RL+G+R+T + P
Sbjct: 292 IRYADFSTFSLQATAGNYTNQSDDIYQAAVLLLDSVDLRQPVRLLGVRITNLRHHTEQLP 351
>gi|322390272|ref|ZP_08063801.1| DNA-directed DNA polymerase IV [Streptococcus parasanguinis ATCC
903]
gi|321143003|gb|EFX38452.1| DNA-directed DNA polymerase IV [Streptococcus parasanguinis ATCC
903]
Length = 368
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 196/362 (54%), Gaps = 40/362 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NPSLKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPSLKGKPVVIGQDPRQSGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A LCP IF+ ++ KY + R++F +Y S+DEAYLD+TE +
Sbjct: 69 AMSSKEALDLCPHAIFISGNYEKYREVGEQVREIFKRYTDLIEPMSIDEAYLDVTE-NKI 127
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 273
+ S ++IA ++ +++EE LT SAGV+ N+ LAK+ SD KP+G VLP D
Sbjct: 128 QSKSAVKIARLIQHAIWEELHLTASAGVSYNKFLAKMASDYQKPHGLTVVLPED---AED 184
Query: 274 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL- 332
F+S + I K G+GK T L ++ G+ T G+ L A+ + D F G L
Sbjct: 185 FLSKMDIAKFHGVGKKTVERLHEM-GVYT-------GADLLAIPEMTLIDRFGRFGYDLF 236
Query: 333 ----GSTNTP--QARFRKSISSERTFSVTEDKALLYRK---LAEIAEM---LSADMQKEG 380
G N+P R RKSI ERT+ + LLY + L EIA + ++ ++K G
Sbjct: 237 RKARGIHNSPVKSHRIRKSIGKERTY-----RKLLYAEDDILEEIANLSSKVAQSLEKHG 291
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVT 438
+G+TL LK++ F T+ +TL + +E I + A + + +RL+G+ +T
Sbjct: 292 KQGKTLVLKVRYGDFTTLTKRITLTEPTREAERINRSARQIFQEIESTNTGIRLLGVTMT 351
Query: 439 QF 440
F
Sbjct: 352 NF 353
>gi|419839102|ref|ZP_14362520.1| DNA polymerase IV [Haemophilus haemolyticus HK386]
gi|386909813|gb|EIJ74477.1| DNA polymerase IV [Haemophilus haemolyticus HK386]
Length = 355
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 130/351 (37%), Positives = 188/351 (53%), Gaps = 24/351 (6%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFIARK 163
+H+DMD FYA++E NP+L GKP+AVG S ++ T NYEAR+FG+ +AMP A K
Sbjct: 8 IHIDMDCFYASIEIRENPNLLGKPVAVGGSSRQRGVLTTCNYEARKFGLHSAMPTAQAIK 67
Query: 164 LCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIA 223
CP LI VP + Y S ++F +Y SLDEAYLD+T C++ S IA
Sbjct: 68 KCPNLILVPVNMALYKQVSAQIHQIFQRYTDIIEPLSLDEAYLDVTH-CQKCSGSATWIA 126
Query: 224 EELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPIRK 282
+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ PN+ V FI +L + K
Sbjct: 127 QEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNE---VSEFIKTLSLNK 183
Query: 283 IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARF 342
I G+GKVT L D+ G+ TC ++ ++ G+ R
Sbjct: 184 IPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRIWDFSHGIDDREVQAHRE 242
Query: 343 RKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
RKS+ E+T ++ + AL LY +L E +S ++ R + +KLK
Sbjct: 243 RKSVGVEQTLVENIHTIEQASALLNNLYDELIRRLERVSRNIPLSSF--RKIGVKLKFED 300
Query: 395 FEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 444
F+V T T L + S + +L + K ++RLIGL V E+K
Sbjct: 301 FQVTTLEKTGLPLSLESFQQLLPQIFMRAKGR---AIRLIGLHVNLPEENK 348
>gi|46908202|ref|YP_014591.1| DNA polymerase IV [Listeria monocytogenes serotype 4b str. F2365]
gi|405753195|ref|YP_006676660.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2378]
gi|67460308|sp|Q71Y46.1|DPO4_LISMF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|46881472|gb|AAT04768.1| putative DNA-damage-inducible protein P [Listeria monocytogenes
serotype 4b str. F2365]
gi|404222395|emb|CBY73758.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2378]
Length = 356
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 193/351 (54%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYHLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDTSQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|254827139|ref|ZP_05231826.1| DNA polymerase IV [Listeria monocytogenes FSL N3-165]
gi|386044283|ref|YP_005963088.1| DNA polymerase IV [Listeria monocytogenes 10403S]
gi|404411276|ref|YP_006696864.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC5850]
gi|258599522|gb|EEW12847.1| DNA polymerase IV [Listeria monocytogenes FSL N3-165]
gi|345537517|gb|AEO06957.1| DNA polymerase IV [Listeria monocytogenes 10403S]
gi|404231102|emb|CBY52506.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC5850]
Length = 356
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 193/351 (54%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVAPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYHLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|375136727|ref|YP_004997377.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter calcoaceticus PHEA-2]
gi|325124172|gb|ADY83695.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter calcoaceticus PHEA-2]
Length = 351
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 123/345 (35%), Positives = 190/345 (55%), Gaps = 14/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LK P+ + + ++I A+Y AR+FG+R+AM A
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLKHLPVVISSHHPRAVIAAASYPARKFGLRSAMSMSQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S E
Sbjct: 62 RKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVTENLKQIA-SATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+ ++A TFI LP++
Sbjct: 121 VAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVA--TFIQDLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G+GKVT+ L+ + ++T + LQK ++L F +L G+
Sbjct: 179 KIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAVLVHHFGKYGQQLYLYAQ-GIDHRPVQA 235
Query: 340 ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 236 ERARQQISKETTFDSDFTLAQCQPYWQGLAEKVWQTLEKKQLNARGVNIKLKLKNFQTLQ 295
Query: 400 RAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 441
+ + ++ I S +D+++ +LL + ++P RLIG+ V Q
Sbjct: 296 HSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|47093298|ref|ZP_00231068.1| DNA-damage-inducible protein P, putative [Listeria monocytogenes
str. 4b H7858]
gi|226224573|ref|YP_002758680.1| DNA-damage-inducible protein dinP (DNA polymerase IV (Pol IV))
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|254825535|ref|ZP_05230536.1| DNA polymerase IV [Listeria monocytogenes FSL J1-194]
gi|254931859|ref|ZP_05265218.1| DNA polymerase IV [Listeria monocytogenes HPB2262]
gi|254992047|ref|ZP_05274237.1| DNA polymerase IV [Listeria monocytogenes FSL J2-064]
gi|255522144|ref|ZP_05389381.1| DNA polymerase IV [Listeria monocytogenes FSL J1-175]
gi|300763720|ref|ZP_07073717.1| DNA-damage-inducible protein P [Listeria monocytogenes FSL N1-017]
gi|386732710|ref|YP_006206206.1| DNA polymerase IV [Listeria monocytogenes 07PF0776]
gi|404281580|ref|YP_006682478.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2755]
gi|404287398|ref|YP_006693984.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|405750322|ref|YP_006673788.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes ATCC
19117]
gi|405756128|ref|YP_006679592.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2540]
gi|406704753|ref|YP_006755107.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
L312]
gi|424823729|ref|ZP_18248742.1| DNA polymerase IV [Listeria monocytogenes str. Scott A]
gi|259645684|sp|C1KWR9.1|DPO4_LISMC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|47018318|gb|EAL09081.1| DNA-damage-inducible protein P, putative [Listeria monocytogenes
serotype 4b str. H7858]
gi|225877035|emb|CAS05744.1| Putative DNA-damage-inducible protein dinP (DNA polymerase IV (Pol
IV)) [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|293583411|gb|EFF95443.1| DNA polymerase IV [Listeria monocytogenes HPB2262]
gi|293594777|gb|EFG02538.1| DNA polymerase IV [Listeria monocytogenes FSL J1-194]
gi|300515456|gb|EFK42506.1| DNA-damage-inducible protein P [Listeria monocytogenes FSL N1-017]
gi|332312409|gb|EGJ25504.1| DNA polymerase IV [Listeria monocytogenes str. Scott A]
gi|384391468|gb|AFH80538.1| DNA polymerase IV [Listeria monocytogenes 07PF0776]
gi|404219522|emb|CBY70886.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes ATCC
19117]
gi|404225328|emb|CBY76690.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2540]
gi|404228215|emb|CBY49620.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2755]
gi|404246327|emb|CBY04552.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|406361783|emb|CBY68056.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
L312]
gi|441471756|emb|CCQ21511.1| DNA polymerase IV [Listeria monocytogenes]
gi|441474889|emb|CCQ24643.1| DNA polymerase IV [Listeria monocytogenes N53-1]
Length = 356
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 193/351 (54%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYHLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|254372939|ref|ZP_04988428.1| hypothetical protein FTCG_00510 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570666|gb|EDN36320.1| hypothetical protein FTCG_00510 [Francisella novicida GA99-3549]
Length = 349
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 128/353 (36%), Positives = 197/353 (55%), Gaps = 29/353 (8%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE +NPSLK KP AVG + +I T NY AR +GVR+AMP I
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGVRSAMPTAI 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A + CP LI + TDF KY S + R++F + SLDEAYLD+T+V + S
Sbjct: 65 AMQKCPNLILLNTDFAKYKAASSIIREIFHSFTDKVEPLSLDEAYLDVTDVTVYKN-SAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+ ++ ++ + GLT S GVAPN+LLAK+ SDINKPNG +V+ ++ V F+ +LP+
Sbjct: 124 LIAQAIKQEIFNKTGLTGSTGVAPNKLLAKIASDINKPNGLYVITPEQ--VNDFVKNLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV-----FSHSTADFFLSVGLGLGST 335
+K+ G+GKV++ L+ + + TC + LQ+ SL V F S ++ G+ +
Sbjct: 182 KKLFGVGKVSQEKLKSM-NVETCSD-LQQLSLATLVDKFGKFGSSLYNY----ARGIDNR 235
Query: 336 NTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLKLK 391
R RKSIS E T+ ED L KL + + L++ + E + + +K
Sbjct: 236 EVNPVRIRKSISVENTY--LEDLKTLEACLEKLPSLYDKLTSRITDEHYKSIIGIVVKFT 293
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGLRVTQFNE 442
F +T + K + ++++K+ + L K P+ L IG+R+ + N+
Sbjct: 294 DTKFN-KTSLTRVSKIL--DKEVIKNLIIELHQKQNHPIRLIGIGVRLGEVND 343
>gi|421107022|ref|ZP_15567582.1| ImpB/MucB/SamB family protein [Leptospira kirschneri str. H2]
gi|410007936|gb|EKO61615.1| ImpB/MucB/SamB family protein [Leptospira kirschneri str. H2]
Length = 362
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 123/356 (34%), Positives = 198/356 (55%), Gaps = 22/356 (6%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGF 159
+R +HVDMDAFYA+VE P KGKP+ VG + S++ A+YEAR+FGVR+AMP
Sbjct: 3 TRKIIHVDMDAFYASVEQRDFPEYKGKPLIVGGPPNSRSVVSAASYEARKFGVRSAMPCS 62
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS- 218
A +L P IFV F Y S R++F +Y SLDE YLD+T ++ IS
Sbjct: 63 KAAQLAPNAIFVLPRFEVYKEVSKQIREIFLEYTDLVEMLSLDEGYLDVT--FNKKNISF 120
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISS 277
+ IA+E+R +++ GLT SAGV+ ++ ++K+ S+ NKPNG VLP+D V++FI
Sbjct: 121 AVTIAKEIRAEIFKRTGLTASAGVSNSKFISKLASEKNKPNGLTVVLPDD---VISFIDP 177
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ G+GKVT ++++ GI T +++ K ++ + G
Sbjct: 178 LPVSSFHGVGKVTSRKMKEL-GIYTGKDLRTKNIEELVQHFGKMGIYYYKISRGEDERMV 236
Query: 338 PQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
+R RKS+ +E TF + D L ++L ++A ++ ++K+ G+TLTLK+K F
Sbjct: 237 ESSRERKSLGAEYTFDQDKLDYNDLLKRLKDVAVIVERRLEKKDFAGKTLTLKIKFYDFS 296
Query: 397 VRTRAVTLQKYISSSEDILKHASVLL---------KAELPVSLRLIGLRVTQFNED 443
++TR+ TL + I + ++ A+ L K ++RL+G+ ++ N +
Sbjct: 297 LKTRSKTLSEPIFKANELYSTAAELFEEFFETKYGKKSAIKAIRLLGISLSHPNSE 352
>gi|313888564|ref|ZP_07822230.1| ImpB/MucB/SamB family protein [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845450|gb|EFR32845.1| ImpB/MucB/SamB family protein [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 346
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 122/347 (35%), Positives = 191/347 (55%), Gaps = 14/347 (4%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKL 164
+HVD+DAFYA+VE L + S+ GKP+ VG S ++ TANY AR++G+ +AMP ++A+ L
Sbjct: 5 IHVDIDAFYASVEELDDKSIIGKPLVVGGRSNHGVVTTANYVARKYGIHSAMPMYMAKNL 64
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 224
C LI P +Y S +V Y S+DE+YLDI+ + + +I
Sbjct: 65 CDHLIIRPMRRERYLEKSREVFEVLKTYTDKIEKVSIDESYLDISGLGYDE-----DIVY 119
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 284
+L+ V+E+ GL+ S G++ N+ LAK+ SD NKP G ++ + + F L IRK+
Sbjct: 120 DLQKKVFEKTGLSVSCGLSYNKFLAKLASDWNKPRGVKIIRESDIPEILF--PLDIRKVH 177
Query: 285 GIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR 343
GIG TE LR++ GINT E++ L +F S + + + G+ + R
Sbjct: 178 GIGNKTEKRLRNI-GINTVEDLYSLSYDFLVTMFKKSGEEIYKRIR-GIDNREVTPNNVR 235
Query: 344 KSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVT 403
KS+ +E TF VT + L L + ++ +S D+ + + G TLTLK+K +F+V+TR+ T
Sbjct: 236 KSLGTESTFEVTSKREKLISHLRDFSKEVSEDLIVKEISGYTLTLKMKDENFKVKTRSRT 295
Query: 404 LQKYISSSEDIL-KHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPS 449
+ I EDI K + +A LRLIG+ V+ + +R S
Sbjct: 296 YENAIYEEEDIFNKSMEIFEEAYEGDKLRLIGITVSNLVDLNIRQLS 342
>gi|418645978|ref|ZP_13208094.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-55]
gi|375022047|gb|EHS15540.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-55]
Length = 356
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 192/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGVYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDILMTLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI ++ +K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|440735334|ref|ZP_20914941.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|436430703|gb|ELP28061.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
DSM 20231]
Length = 356
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 192/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDILMTLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI ++ +K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRVRKSVGTERTFATDVNDDEEIL-RKVWELSGETAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|404414053|ref|YP_006699640.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC7179]
gi|404239752|emb|CBY61153.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC7179]
Length = 356
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 193/351 (54%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TKQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVAPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYHLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|386317724|ref|YP_006013888.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
gi|422759836|ref|ZP_16813598.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|322412671|gb|EFY03579.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|323128011|gb|ADX25308.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
Length = 365
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 201/362 (55%), Gaps = 31/362 (8%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY R +F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPQAIFISGNYEKYRSVGQEIRHIFKRYTDLVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ ++ E LTCSAGV+ N+ LAK+ SD KP+G VLP D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQD---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLG 331
+F++ LPI K G+GK + L ++ GI T +++L+ + L F D + G
Sbjct: 184 SFLADLPIEKFHGVGKKSVEKLHEM-GIYTGQDLLEVPEMTLIDHFGRFGFDLYRK-ARG 241
Query: 332 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 385
+ + R RKSI SERT++ LLY++ AEI A ++A +Q G+T
Sbjct: 242 ISHSPVKPNRIRKSIGSERTYA-----KLLYQEADIKAEISKNARRVAALLQDHKKLGKT 296
Query: 386 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFNED 443
+ LK++ A F T+ VTL + + I + A + E V +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRDAAQIEQVAESIFDTLPEHTVGIRLLGVTMTNL-ED 355
Query: 444 KV 445
K+
Sbjct: 356 KM 357
>gi|187931836|ref|YP_001891821.1| DNA polymerase IV [Francisella tularensis subsp. mediasiatica
FSC147]
gi|226738233|sp|B2SH34.1|DPO4_FRATM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|187712745|gb|ACD31042.1| DNA-damage inducible protein P [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 349
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 194/343 (56%), Gaps = 21/343 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE +NPSLK KP AVG + +I T NY AR +GVR+AMP I
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGVRSAMPTAI 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E S
Sbjct: 65 AMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEYKNSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+ LP+
Sbjct: 124 LIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQ--VDSFVKDLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLGSTNTP 338
+K+ G+GKV++ L+ G+ TC + LQ+ SL V F + + + G+ +
Sbjct: 182 KKLFGVGKVSQEKLKST-GVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGIDNREVN 238
Query: 339 QARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLKLKTAS 394
R RKS+S E T+ ED L KL + + L++ + +E + + +K
Sbjct: 239 PVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRITEEHYKSIIGIVVKFTDTK 296
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 437
F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 297 FN-KTSLTRVAKIL--DKEMLKNLIIELHQKQNHPIRLIGIGV 336
>gi|424725316|ref|YP_007013399.1| Hypothetical protein [Agrobacterium tumefaciens]
gi|418434494|gb|AFX65586.1| Hypothetical protein [Agrobacterium tumefaciens]
Length = 364
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 121/345 (35%), Positives = 186/345 (53%), Gaps = 12/345 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+GKP+AVG ++ TA+YEAR FG+ +AMP A
Sbjct: 8 RKIIHVDMDAFYASVEQRDNPDLRGKPIAVGGAGARGVLTTASYEARVFGIHSAMPSVTA 67
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ CP+LIFV F Y S ++F +Y SLDEAYLD+TE +E I+ E
Sbjct: 68 ARKCPDLIFVKPRFEVYREVSRQICEIFAEYTSLVEPLSLDEAYLDVTENLKEMPIA-TE 126
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA +R + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F+ L +
Sbjct: 127 IALAIRAKIKAVTGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---FVEGLAV 183
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T + + GI T ++ K + + +F + G+
Sbjct: 184 KKFHGVGPATAEKMHRL-GIETGADLKTKSLQFLSQHFGKSGGYFYGIARGIDERQVRPD 242
Query: 341 RFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TF D + +L +A+ + + G+ +T+T+K+K + F T
Sbjct: 243 RVRKSVGAEDTFIQDINDLGVARDELKPLADKVWGYCKSSGIEAKTVTVKIKYSDFTQAT 302
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVTQFNE 442
R+ T + D+L+ A+ LL P +S+RL+G+ ++ +
Sbjct: 303 RSKTSVLPFADGHDVLRIAADLLTTVYPFKLSVRLLGVTLSSLTK 347
>gi|422413513|ref|ZP_16490472.1| DNA polymerase IV [Listeria innocua FSL S4-378]
gi|313618089|gb|EFR90198.1| DNA polymerase IV [Listeria innocua FSL S4-378]
Length = 356
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 192/351 (54%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATMVAREIQQTIYREIGLTASAGVSFNKFIAKIASDFKKPAGITVVAPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYQLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDNRILEQSLMKFAKKVEERLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYKGQDSIRLIGLTVTNL 343
>gi|423098874|ref|ZP_17086582.1| putative DNA polymerase IV [Listeria innocua ATCC 33091]
gi|370794701|gb|EHN62464.1| putative DNA polymerase IV [Listeria innocua ATCC 33091]
Length = 356
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 192/351 (54%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIKTGAD-LKKWSEWDLIRELHKHGYHLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEERLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|190894484|ref|YP_001984777.1| DNA polymerase IV [Rhizobium etli CIAT 652]
gi|190700145|gb|ACE94227.1| DNA-directed DNA polymerase protein [Rhizobium etli CIAT 652]
Length = 362
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 122/345 (35%), Positives = 188/345 (54%), Gaps = 16/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE N L+GKP+AVG ++ A+YEAR +GV +AMP A
Sbjct: 10 RKIVHIDMDAFYASVEQRDNQDLRGKPIAVGGSAARGVVAAASYEARAYGVHSAMPSVTA 69
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CPELIFV F Y S R++F +Y SLDEAYLD+T + I+ E
Sbjct: 70 KRKCPELIFVAPRFDVYKAVSQQIREIFAEYTAVIEPLSLDEAYLDVTHNLKGMEIA-TE 128
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F+ +LP+
Sbjct: 129 IALEIRAKIKQATGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---FVEALPV 185
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGLGSTNTP 338
+K G+G T + + GI+T ++ KG L + H + +F + G+
Sbjct: 186 KKFHGVGPATADKMHRL-GIDTGADL--KGKTLEFLVEHFGKSGPYFHGIARGIDERQVK 242
Query: 339 QARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +E TFS R+ L + E + + G+ +T+TLK+K A F
Sbjct: 243 PNRVRKSVGAEDTFSQDLHAYEPARQGLQPLIEKVWGYCEANGIGAKTVTLKVKYADFHQ 302
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
TR+ T+ + ++ + S++L P +RL+G+ ++
Sbjct: 303 ITRSKTVPTLLRGITELEEIISLMLAPIFPPRKGIRLLGITLSSL 347
>gi|288800924|ref|ZP_06406381.1| DNA polymerase IV [Prevotella sp. oral taxon 299 str. F0039]
gi|288332385|gb|EFC70866.1| DNA polymerase IV [Prevotella sp. oral taxon 299 str. F0039]
Length = 364
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 194/352 (55%), Gaps = 14/352 (3%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM---ICTANYEARRFGVRAAMPGF 159
L R +H+DMD+F+A+VE N LKGKP+AVG+ ++ + TA+YEAR FGVR+AM
Sbjct: 2 LERKIIHIDMDSFFASVEQRDNAELKGKPIAVGSDTIRGVVSTASYEARLFGVRSAMSVV 61
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
A++LCP+LI VP F Y S +VF Y SLDEA+LDIT C
Sbjct: 62 KAKQLCPQLILVPPRFNIYKEVSKTIHEVFHDYTELIEPLSLDEAFLDIT-ACTSTYDKA 120
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
I IA+E++ + + LT SAG++ N+ LAK+ SD NKPNG FVL + FI +L
Sbjct: 121 INIAKEIKEKIQQRTQLTASAGISYNKFLAKIASDYNKPNGLFVLT--EAEALDFIDNLV 178
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
I + GIG+ T L D+ GI T +++ L + L+ +F + + + G+ +
Sbjct: 179 IERFWGIGRKTALRLHDM-GIFTGKDLKSLSQKRLI-DIFG-KPGNLYYNFSRGIDNRAV 235
Query: 338 PQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
RKS+ E TF +D + L +L + L ++K +G+TLTLK+K A F
Sbjct: 236 HTDSIRKSVGCECTFEKDLQDNSALTIELYHLVLDLVRRIEKTHFKGKTLTLKVKYADFH 295
Query: 397 VRTRAVTLQKYISSSEDILKHASVLL--KAELPVSLRLIGLRVTQFNEDKVR 446
TR+VT ++ + IL A LL S+RL+GL ++ + +K++
Sbjct: 296 QITRSVTSVNVFNTKDQILPVAKRLLFDIKNFDCSIRLMGLSISNPSTNKLQ 347
>gi|379796249|ref|YP_005326248.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356873240|emb|CCE59579.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 356
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 191/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASNRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEQTQLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYRNVHDILMALDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI T +++ K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHD-HGIFTGKDLYNKSEFELIHLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 TRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS DI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSENDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|337282710|ref|YP_004622181.1| DNA-directed DNA polymerase IV [Streptococcus parasanguinis ATCC
15912]
gi|335370303|gb|AEH56253.1| DNA-directed DNA polymerase IV [Streptococcus parasanguinis ATCC
15912]
Length = 368
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 196/362 (54%), Gaps = 40/362 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NPSLKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPSLKGKPVVIGQDPRQSGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A LCP+ IF+ ++ KY + R++F +Y S+DEAYLD+TE +
Sbjct: 69 AMSSKEALDLCPQAIFISGNYEKYREVGEQVREIFKRYTDLIEPMSIDEAYLDVTE-NKI 127
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 273
+ S ++IA ++ +++EE LT SAGV+ N+ LAK+ SD KP G VLP D
Sbjct: 128 QSKSAVKIARLIQHAIWEELHLTASAGVSYNKFLAKMASDYQKPRGLTVVLPED---AED 184
Query: 274 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL- 332
F+S + I K G+GK T L ++ G+ T G+ L A+ + D F G L
Sbjct: 185 FLSQMDIAKFHGVGKKTVERLHEM-GVYT-------GADLLAIPEMTLIDRFGRFGYDLF 236
Query: 333 ----GSTNTP--QARFRKSISSERTFSVTEDKALLYRK---LAEIAEM---LSADMQKEG 380
G N+P R RKSI ERT+ + LLY + L EIA + ++ ++K G
Sbjct: 237 RKARGIHNSPVKSHRIRKSIGKERTY-----RKLLYAEDDILEEIANLSSKVAQSLEKHG 291
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVT 438
+G+TL LK++ F T+ +TL + +E I + A + + +RL+G+ +T
Sbjct: 292 KQGKTLVLKVRYGDFTTLTKRITLTEPTREAERINRSARHIFQEIESTNTGIRLLGVTMT 351
Query: 439 QF 440
F
Sbjct: 352 NF 353
>gi|284802420|ref|YP_003414285.1| hypothetical protein LM5578_2176 [Listeria monocytogenes 08-5578]
gi|284995562|ref|YP_003417330.1| hypothetical protein LM5923_2127 [Listeria monocytogenes 08-5923]
gi|284057982|gb|ADB68923.1| hypothetical protein LM5578_2176 [Listeria monocytogenes 08-5578]
gi|284061029|gb|ADB71968.1| hypothetical protein LM5923_2127 [Listeria monocytogenes 08-5923]
Length = 356
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 192/351 (54%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKPAGITVVAPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYHLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEERLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|414156233|ref|ZP_11412542.1| DNA polymerase IV [Streptococcus sp. F0442]
gi|410872442|gb|EKS20386.1| DNA polymerase IV [Streptococcus sp. F0442]
Length = 368
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 125/356 (35%), Positives = 196/356 (55%), Gaps = 28/356 (7%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NPSLKG+P+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPSLKGQPLVIGQDPRQSGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A +LCP+ IF+ ++ KY + R++F +Y S+DEAYLD+TE +
Sbjct: 69 AMSSKEALELCPKAIFISGNYEKYREVGEQVREIFRRYTDLIEPMSIDEAYLDVTE-NKI 127
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 273
+ S ++IA ++ +++EE LT SAGV+ N+ LAK+ SD KP G VLP D
Sbjct: 128 QSKSAVKIARLIQHAIWEELHLTASAGVSYNKFLAKMASDYQKPRGLTVVLPED---AED 184
Query: 274 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGL 332
F+ + I K G+GK T L ++ G+ T ++L + L F D F G+
Sbjct: 185 FLGQMDIAKFHGVGKKTVERLHEM-GVYTGADLLDIPEMTLIDRFGRFGYDLFRK-ARGI 242
Query: 333 GSTNTPQARFRKSISSERTFSVTEDKALLYRK---LAEIAEM---LSADMQKEGLRGRTL 386
++ R RKSI ERT+ + LLY + L EIA + ++ ++K G +G+TL
Sbjct: 243 HNSPVKNHRIRKSIGKERTY-----RKLLYAEDDILEEIANLSSKVAQSLEKHGKQGKTL 297
Query: 387 TLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQF 440
LK++ A F T+ +TL + +E I + A + + + +RL+G+ +T F
Sbjct: 298 VLKVRDADFTTLTKRITLTEPTRDAERINRSARHIFQEIESTNMGIRLLGVTMTNF 353
>gi|16801148|ref|NP_471416.1| DNA polymerase IV [Listeria innocua Clip11262]
gi|22095622|sp|Q92A40.1|DPO4_LISIN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|16414583|emb|CAC97312.1| lin2082 [Listeria innocua Clip11262]
Length = 356
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 192/351 (54%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKPAGITVVAPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYQLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDNRILEQSLMKFAKKVEERLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYKGQDSIRLIGLTVTNL 343
>gi|417840269|ref|ZP_12486413.1| DNA polymerase IV [Haemophilus haemolyticus M19107]
gi|341949079|gb|EGT75689.1| DNA polymerase IV [Haemophilus haemolyticus M19107]
Length = 355
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 187/351 (53%), Gaps = 24/351 (6%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFIARK 163
+H+DMD FYA++E NP+L+GKP+AVG S ++ T NYEAR+FG+ +AMP A K
Sbjct: 8 IHIDMDCFYASIEIRENPNLQGKPVAVGGSSRQRGVLTTCNYEARKFGLHSAMPTAQAIK 67
Query: 164 LCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIA 223
CP LI VP + Y S ++F +Y SLDEAYLD+T C++ S IA
Sbjct: 68 KCPNLILVPVNMALYKQVSAQIHQIFHRYTDIIEPLSLDEAYLDVTH-CQKCSGSATWIA 126
Query: 224 EELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPIRK 282
+E+R ++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ PN+ V FI +L + K
Sbjct: 127 QEIRQAIFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNE---VSEFIKTLSLNK 183
Query: 283 IGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARF 342
I G+GKVT L D+ G+ TC ++ ++ G+ R
Sbjct: 184 IPGVGKVTSQRLLDM-GLETCADIQNFDQIVLLNQFGKAGKRIWDFSHGIDDREVQAHRE 242
Query: 343 RKSISSERTF-----SVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
RKS+ E+T ++ + L LY +L E +S ++ R + +KLK
Sbjct: 243 RKSVGVEQTLIENIHTIEQASELLNNLYDELIRRLERVSCNIPLSAF--RKIGVKLKFED 300
Query: 395 FEVRTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDK 444
F+V T T L + S + + + K S+RLIGL V E+K
Sbjct: 301 FQVTTLEKTGLPLSLESFQQLFPQIFMRAKGR---SIRLIGLHVNLPEENK 348
>gi|293610008|ref|ZP_06692309.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827240|gb|EFF85604.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 351
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 123/345 (35%), Positives = 190/345 (55%), Gaps = 14/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LK P+ + + ++I A+Y AR FG+R+AM A
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLKHLPVVISSHHPRAVIAAASYPAREFGLRSAMSMSQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S E
Sbjct: 62 RKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVTENLKQIA-SATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A ++R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+ ++A TFI LP++
Sbjct: 121 VAMQIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVA--TFIQDLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G+GKVT+ L+ + ++T + LQK ++L F +L G+
Sbjct: 179 KIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAVLVHHFGKYGQQLYLYAQ-GIDHRPVQA 235
Query: 340 ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 236 ERARQQISKETTFDSDFTLAQCQPYWQGLAEKVWQTLEKKQLNARGVNIKLKLKNFQTLQ 295
Query: 400 RAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 441
+ + ++ I S +D+++ +LL + ++P RLIG+ V Q
Sbjct: 296 HSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|153809307|ref|ZP_01961975.1| hypothetical protein BACCAC_03620 [Bacteroides caccae ATCC 43185]
gi|149128077|gb|EDM19298.1| putative DNA polymerase IV [Bacteroides caccae ATCC 43185]
Length = 363
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 126/352 (35%), Positives = 196/352 (55%), Gaps = 20/352 (5%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGF 159
+ R +H+DMDAFYA+VE +P L+GKP+AVG ++ A+YEARR+GVR+AM
Sbjct: 2 VQRKIIHIDMDAFYASVEQRDHPELRGKPLAVGHAEERGVVAAASYEARRYGVRSAMSSQ 61
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS- 218
A++LCP+LIFVP Y S ++F +Y SLDEA+LD+TE ++GIS
Sbjct: 62 KAKRLCPQLIFVPGRMDVYKSVSRQIHEIFHEYTDIIEPLSLDEAFLDVTE--NKKGISL 119
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
++IA+E++ + ++ L SAG++ N+ LAK+ SD KP+G + ++ + FI+ L
Sbjct: 120 AVDIAKEIKQKIRDQLNLVASAGISYNKFLAKIASDYRKPDGLCTIHPEQ--ALEFIARL 177
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTN 336
PI G+G VT + + GI + L+K SL L A F + G+
Sbjct: 178 PIESFWGVGPVTAKRMH-LLGIRNGLQ-LRKCSLETLTAHFG-KVGSLYYECARGIDERP 234
Query: 337 TPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKSI ERT ++ ++ +L +A L +Q++ +G TLTLK+K F
Sbjct: 235 VEAVRIRKSIGCERTLERDISSRSSVFIELYHMAVELIERLQRKEFKGNTLTLKIKFHDF 294
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA----ELPVSLRLIGLRVTQFNED 443
TR++T + +++ + +L A LLK + P+ RLIGL V+ E+
Sbjct: 295 SQITRSITQSQELTTLDRVLPLAKELLKTVEYEQHPI--RLIGLSVSNPKEE 344
>gi|423217476|ref|ZP_17203972.1| DNA polymerase IV [Bacteroides caccae CL03T12C61]
gi|392628635|gb|EIY22661.1| DNA polymerase IV [Bacteroides caccae CL03T12C61]
Length = 363
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 195/352 (55%), Gaps = 20/352 (5%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGF 159
+ R +H+DMDAFYA+VE +P L+GKP+AVG ++ A+YEARR+GVR+AM
Sbjct: 2 VQRKIIHIDMDAFYASVEQRDHPELRGKPLAVGHAEERGVVAAASYEARRYGVRSAMSSQ 61
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS- 218
A++LCP+LIFVP Y S ++F +Y SLDEA+LD+TE ++GIS
Sbjct: 62 KAKRLCPQLIFVPGRMDVYKSVSRQIHEIFHEYTDIIEPLSLDEAFLDVTE--NKKGISL 119
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
++IA+E++ + E+ L SAG++ N+ LAK+ SD KP+G + ++ + FI+ L
Sbjct: 120 AVDIAKEIKQKIREQLNLVASAGISYNKFLAKIASDYRKPDGLCTIHPEQ--ALEFIARL 177
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTN 336
PI G+G VT + + GI + L+K SL L A F + G+
Sbjct: 178 PIESFWGVGPVTAKRMH-LLGIRNGLQ-LRKCSLETLTAHFG-KVGSLYYECARGIDERP 234
Query: 337 TPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKSI ERT ++ + +L +A L +Q++ +G TLTLK+K F
Sbjct: 235 VEAVRIRKSIGCERTLERDISSRSSVIIELYHMAVELIERLQRKEFKGNTLTLKIKFHDF 294
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA----ELPVSLRLIGLRVTQFNED 443
TR++T + +++ + +L A LLK + P+ RLIGL V+ E+
Sbjct: 295 SQITRSITQSQELTTLDRVLPLAKELLKTVEYEQHPI--RLIGLSVSNPKEE 344
>gi|148268367|ref|YP_001247310.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus JH9]
gi|150394429|ref|YP_001317104.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus JH1]
gi|189044606|sp|A6U2Z9.1|DPO4_STAA2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044607|sp|A5IU61.1|DPO4_STAA9 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|147741436|gb|ABQ49734.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
JH9]
gi|149946881|gb|ABR52817.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
JH1]
Length = 356
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 192/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVI--DYQNVHDILMTLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI ++ +K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|170727937|ref|YP_001761963.1| DNA polymerase IV [Shewanella woodyi ATCC 51908]
gi|254781923|sp|B1KD33.1|DPO4_SHEWM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|169813284|gb|ACA87868.1| DNA-directed DNA polymerase [Shewanella woodyi ATCC 51908]
Length = 364
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 137/210 (65%), Gaps = 8/210 (3%)
Query: 101 RDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAM 156
+++ R +H+DMD ++AAVE P L+GKP+AVG S +I T NYEAR FGVR+AM
Sbjct: 2 KNILRKIIHIDMDCYFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARAFGVRSAM 61
Query: 157 PGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERG 216
A KLCP+LI VP + Y S R +F +Y SLDEAYLD+TE C++
Sbjct: 62 ASGYALKLCPDLILVPGRMSVYKEVSAQIRDIFARYTDLIEPLSLDEAYLDVTE-CKQCQ 120
Query: 217 ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 276
S IA+ +R ++E GLT SAG+AP + LAKV SD+NKPNGQ+V+ D ++ +FI+
Sbjct: 121 GSATLIAQAIRQEIFEVTGLTASAGIAPVKFLAKVASDLNKPNGQYVITPDMIS--SFIT 178
Query: 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEM 306
+LP+ KI G+GKVT L D+ G+ TC E+
Sbjct: 179 TLPLTKIPGVGKVTGKKLEDI-GLTTCGEL 207
>gi|315303932|ref|ZP_07874389.1| DNA polymerase IV [Listeria ivanovii FSL F6-596]
gi|313627694|gb|EFR96370.1| DNA polymerase IV [Listeria ivanovii FSL F6-596]
Length = 356
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 127/348 (36%), Positives = 190/348 (54%), Gaps = 15/348 (4%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P+ +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPAFRGKPLIIGGDPNKRGVVSTCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + + Y S R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TKQAVKLCPHGIFIHGNMSHYVEVSGQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 276
S IA +++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V+ D F+
Sbjct: 120 KSATLIARDIQQTIYRELGLTASAGVSFNKFIAKIASDFQKPAGITVVSPDEAE--AFLE 177
Query: 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
+P+ K G+GKVT L + GI T + L+K S + + L + S N
Sbjct: 178 KIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKQGYHLYRHVRGRSNN 235
Query: 337 TPQA-RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
R RKS+ E TF D+ +L + L A+ + + K G+T+ LKL+ +
Sbjct: 236 VVNPHRDRKSVGKETTFEFNILDERILEQNLMIFAKKVEERLTKLQKHGKTVVLKLRYSD 295
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
F T+ +TL +YI ++ I + A++LL S+RLIGL VT
Sbjct: 296 FTTVTKRLTLNEYIHDAKQIYQAAALLLSETYTGKESIRLIGLTVTNL 343
>gi|410681235|ref|YP_006933637.1| impB/mucB/samB family protein [Streptococcus pyogenes A20]
gi|409693824|gb|AFV38684.1| impB/mucB/samB family protein [Streptococcus pyogenes A20]
Length = 323
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 187/325 (57%), Gaps = 40/325 (12%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVKKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEIA---EMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI+ + ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNVKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTL 404
G+T+ LK++ A F T+ VTL
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTL 315
>gi|15924885|ref|NP_372419.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50]
gi|15927469|ref|NP_375002.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus N315]
gi|156980211|ref|YP_001442470.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu3]
gi|253316904|ref|ZP_04840117.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006682|ref|ZP_05145283.2| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50-omega]
gi|257793751|ref|ZP_05642730.1| DNA polymerase IV [Staphylococcus aureus A9781]
gi|258421003|ref|ZP_05683934.1| DNA polymerase IV [Staphylococcus aureus A9719]
gi|258430025|ref|ZP_05688395.1| DNA polymerase IV [Staphylococcus aureus A9299]
gi|258443457|ref|ZP_05691799.1| DNA polymerase IV [Staphylococcus aureus A8115]
gi|258445315|ref|ZP_05693506.1| DNA polymerase IV [Staphylococcus aureus A6300]
gi|258447879|ref|ZP_05696013.1| DNA polymerase IV [Staphylococcus aureus A6224]
gi|258453312|ref|ZP_05701297.1| DNA polymerase IV [Staphylococcus aureus A5937]
gi|269203548|ref|YP_003282817.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
ED98]
gi|282894562|ref|ZP_06302790.1| DNA polymerase IV [Staphylococcus aureus A8117]
gi|282928068|ref|ZP_06335675.1| DNA polymerase IV [Staphylococcus aureus A10102]
gi|295407275|ref|ZP_06817074.1| DNA polymerase IV [Staphylococcus aureus A8819]
gi|296276904|ref|ZP_06859411.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MR1]
gi|297246199|ref|ZP_06930050.1| DNA polymerase IV [Staphylococcus aureus A8796]
gi|384865100|ref|YP_005750459.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|386831484|ref|YP_006238138.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387151036|ref|YP_005742600.1| DNA polymerase IV [Staphylococcus aureus 04-02981]
gi|415693410|ref|ZP_11455212.1| hypothetical protein CGSSa03_08540 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417652327|ref|ZP_12302075.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21172]
gi|417799257|ref|ZP_12446403.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21310]
gi|417802359|ref|ZP_12449421.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21318]
gi|417892730|ref|ZP_12536773.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21201]
gi|418313350|ref|ZP_12924841.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21334]
gi|418425084|ref|ZP_12998184.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS1]
gi|418428036|ref|ZP_13001029.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS2]
gi|418430906|ref|ZP_13003812.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS3a]
gi|418434765|ref|ZP_13006620.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS4]
gi|418437519|ref|ZP_13009303.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS5]
gi|418440428|ref|ZP_13012121.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS6]
gi|418443426|ref|ZP_13015021.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS7]
gi|418446497|ref|ZP_13017961.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS8]
gi|418449518|ref|ZP_13020893.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS9]
gi|418452343|ref|ZP_13023672.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS10]
gi|418455316|ref|ZP_13026569.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11a]
gi|418458192|ref|ZP_13029385.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11b]
gi|418600140|ref|ZP_13163609.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21343]
gi|418640175|ref|ZP_13202408.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-3]
gi|418653301|ref|ZP_13215240.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-99]
gi|418656863|ref|ZP_13218650.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-105]
gi|418878853|ref|ZP_13433085.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881582|ref|ZP_13435797.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884557|ref|ZP_13438743.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418887258|ref|ZP_13441399.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418894685|ref|ZP_13448783.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418915025|ref|ZP_13468993.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418920153|ref|ZP_13474087.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|419784424|ref|ZP_14310191.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-M]
gi|443635272|ref|ZP_21119403.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21236]
gi|54036997|sp|P63992.1|DPO4_STAAN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|54040958|sp|P63991.1|DPO4_STAAM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044605|sp|A7X420.1|DPO4_STAA1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|13701688|dbj|BAB42981.1| SA1711 [Staphylococcus aureus subsp. aureus N315]
gi|14247667|dbj|BAB58057.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50]
gi|156722346|dbj|BAF78763.1| hypothetical protein SAHV_1880 [Staphylococcus aureus subsp. aureus
Mu3]
gi|257787723|gb|EEV26063.1| DNA polymerase IV [Staphylococcus aureus A9781]
gi|257842951|gb|EEV67369.1| DNA polymerase IV [Staphylococcus aureus A9719]
gi|257849619|gb|EEV73587.1| DNA polymerase IV [Staphylococcus aureus A9299]
gi|257851342|gb|EEV75282.1| DNA polymerase IV [Staphylococcus aureus A8115]
gi|257855833|gb|EEV78757.1| DNA polymerase IV [Staphylococcus aureus A6300]
gi|257858811|gb|EEV81680.1| DNA polymerase IV [Staphylococcus aureus A6224]
gi|257864520|gb|EEV87263.1| DNA polymerase IV [Staphylococcus aureus A5937]
gi|262075838|gb|ACY11811.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
ED98]
gi|282590132|gb|EFB95213.1| DNA polymerase IV [Staphylococcus aureus A10102]
gi|282763049|gb|EFC03181.1| DNA polymerase IV [Staphylococcus aureus A8117]
gi|285817575|gb|ADC38062.1| DNA polymerase IV [Staphylococcus aureus 04-02981]
gi|294967850|gb|EFG43880.1| DNA polymerase IV [Staphylococcus aureus A8819]
gi|297176906|gb|EFH36163.1| DNA polymerase IV [Staphylococcus aureus A8796]
gi|312830267|emb|CBX35109.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315129296|gb|EFT85290.1| hypothetical protein CGSSa03_08540 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329724814|gb|EGG61318.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21172]
gi|334274366|gb|EGL92687.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21310]
gi|334274843|gb|EGL93150.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21318]
gi|341857210|gb|EGS98032.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21201]
gi|365236159|gb|EHM77060.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21334]
gi|374395052|gb|EHQ66326.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21343]
gi|375015118|gb|EHS08783.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-3]
gi|375018963|gb|EHS12529.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-99]
gi|375032138|gb|EHS25391.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-105]
gi|377693131|gb|EHT17506.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377696038|gb|EHT20395.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377712330|gb|EHT36548.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377722126|gb|EHT46253.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377730091|gb|EHT54165.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377755053|gb|EHT78957.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377766065|gb|EHT89903.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|383364037|gb|EID41359.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-M]
gi|385196876|emb|CCG16513.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387716866|gb|EIK04904.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS2]
gi|387717367|gb|EIK05382.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS3a]
gi|387717639|gb|EIK05639.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS1]
gi|387724007|gb|EIK11693.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS4]
gi|387726071|gb|EIK13655.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS5]
gi|387729222|gb|EIK16678.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS6]
gi|387733714|gb|EIK20887.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS8]
gi|387735534|gb|EIK22654.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS9]
gi|387735637|gb|EIK22748.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS7]
gi|387743458|gb|EIK30250.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS10]
gi|387743497|gb|EIK30288.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11a]
gi|387745166|gb|EIK31927.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11b]
gi|443409751|gb|ELS68242.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21236]
Length = 356
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 192/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVI--DYQNVHDILMTLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI ++ +K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|358012029|ref|ZP_09143839.1| DNA polymerase IV [Acinetobacter sp. P8-3-8]
Length = 351
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 125/363 (34%), Positives = 199/363 (54%), Gaps = 25/363 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LK P+ V + ++I A+Y AR+FG+R+AM A
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLKHLPVVVSSHHPRAVIAAASYPARQFGLRSAMAMAQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP+++ + +F KY S ++F Y SLDEA+LD+TE + S E
Sbjct: 62 RKLCPQVVVIEPNFEKYREVSQQIHQIFQHYTSTIEPLSLDEAFLDVTENLQNIP-SATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+AE +R +++ GLT SAGVAPN+ LAK+ SD NKPNG ++ + V FI LP++
Sbjct: 121 VAECIRADIFKTTGLTASAGVAPNKFLAKIASDWNKPNGICIIKPSQ--VQHFIHDLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
KI G+GKVT+ L+ + + T ++ Q ++L F FL G+
Sbjct: 179 KIPGVGKVTQEKLKSL-NLETLGDLQQVDENVLIHHFGKYGKQLFL-YAQGIDERPVQAE 236
Query: 341 RFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R R+ IS E TF S+T+ + E + +QK+ ++ R + +KLK +F+
Sbjct: 237 RQRQQISKEITFDDDLSITQCSPY----WDNLIERVWLSLQKKQMQARGVNVKLKLKNFQ 292
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLK-AELP--VSLRLIGLRVTQFNEDKVRAPSDPTQ 453
V + + + ++S +D+++ +LL+ ++P + RLIG+ + Q E + D TQ
Sbjct: 293 VLQHSKSFKLALNSQQDMVQVIKLLLQEMQIPEHLQFRLIGVGLYQLTEQQ-----DETQ 347
Query: 454 KTL 456
+L
Sbjct: 348 LSL 350
>gi|387880280|ref|YP_006310583.1| DNA polymerase IV [Streptococcus parasanguinis FW213]
gi|386793729|gb|AFJ26764.1| DNA polymerase IV [Streptococcus parasanguinis FW213]
Length = 368
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 196/362 (54%), Gaps = 40/362 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NPSLKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPSLKGKPVVIGQDPRQSGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A LCP+ IF+ ++ KY + R++F +Y S+DEAYLD+TE +
Sbjct: 69 AMSSKEALDLCPQAIFISGNYEKYREVGEQVREIFKRYTDLIEPMSIDEAYLDVTE-NKI 127
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 273
+ S ++IA ++ +++EE LT SAGV+ N+ LAK+ SD KP G VLP D
Sbjct: 128 QSKSAVKIARLIQHAIWEELHLTASAGVSYNKFLAKMASDYQKPRGLTVVLPED---AED 184
Query: 274 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL- 332
F+S + I K G+GK T L ++ G+ T G+ L AV + D F G L
Sbjct: 185 FLSQMDIAKFHGVGKKTVERLHEM-GVYT-------GADLLAVSEMTLIDRFGRFGYDLF 236
Query: 333 ----GSTNTP--QARFRKSISSERTFSVTEDKALLYRK---LAEIAEM---LSADMQKEG 380
G N+P R RKSI ERT+ + LLY + L EIA + ++ ++K
Sbjct: 237 RKARGIHNSPVKSHRIRKSIGKERTY-----RKLLYAEDDILEEIANLSSKVAQSLEKHD 291
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVT 438
+G+TL LK++ F T+ +TL + +E I + A + + + +RL+G+ +T
Sbjct: 292 KQGKTLVLKVRYGDFTTLTKRITLTEPTRDAERINRSARHIFQEIESINTGIRLLGVTMT 351
Query: 439 QF 440
F
Sbjct: 352 NF 353
>gi|381184017|ref|ZP_09892694.1| DNA polymerase IV [Listeriaceae bacterium TTU M1-001]
gi|380316085|gb|EIA19527.1| DNA polymerase IV [Listeriaceae bacterium TTU M1-001]
Length = 356
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/347 (35%), Positives = 185/347 (53%), Gaps = 13/347 (3%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D+SR +H+DMDAF+A+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DVSRKIIHIDMDAFFASVEQRDHPEYRGKPLIIGGDPNKRGVVSTCSYEARQFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCPE IF+ + Y S R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TKQAAKLCPEGIFIHGNMEHYVTVSTQIREIFKRYTDIVEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 276
S IA E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V+P ++ TF+
Sbjct: 120 ASATLIAREIQYAIYHELGLTSSAGVSYNKFIAKIASDYKKPAGLTVIPPEKAE--TFLE 177
Query: 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
S+PI K G+GKVT + + GI T +++ H + G +
Sbjct: 178 SIPIDKFYGVGKVTSEKMHRL-GIKTGKDLKAWSEWDLIREFHKHGYYLYRHVRGRSNNI 236
Query: 337 TPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R RKS+ E TF D+ +L + L +E + + K G+T+ LKL+ + F
Sbjct: 237 VNPHRDRKSVGKETTFERNVVDELVLEKSLMRFSEKIETRLLKIQKHGKTVVLKLRYSDF 296
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 440
T+ +TL Y+ + I + LL S +RLIGL VT
Sbjct: 297 TTITKRMTLTNYVHDRQMIYEAGLALLNEVYNGSEAIRLIGLTVTNL 343
>gi|296449696|ref|ZP_06891466.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP08]
gi|296261420|gb|EFH08245.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP08]
Length = 365
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/357 (34%), Positives = 195/357 (54%), Gaps = 24/357 (6%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
+L R +H+DMDAFYA++E N LKG+P+ VG + ++ T +YEAR+FG+ +AMP
Sbjct: 2 ELHRKIIHIDMDAFYASIEQRDNKKLKGRPVIVGGNPQSRGVVATCSYEARKFGIHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
+A CP +FV F Y S+ R +F +Y SLDEAYLD+T+ ++ I
Sbjct: 62 SAVAYNRCPYAVFVRPRFDVYKSVSEQIRDIFYRYTDLVEPLSLDEAYLDVTK--NKKNI 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 276
S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KPNG V+ + F+
Sbjct: 120 DSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLKKPNGLTVITEEN--AQDFLD 177
Query: 277 SLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLLCAVFSHSTADFFLSVGLG 331
LP+ K G+GKVT + L+++ GI T C + + L +F + + G
Sbjct: 178 KLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----LENIFKKRGYELY-KFARG 231
Query: 332 LGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 389
+ R RKS+ +E T S + D+ L E+ E + ++ G+TLTLK
Sbjct: 232 IDDRPVEPNRVRKSVGAETTLSHNLNIDEEETRNILDELCEEVCHRLKSSEKFGKTLTLK 291
Query: 390 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AEL-PVSLRLIGLRVTQFNEDK 444
+K F TR+++L+ YI DI + LL+ E+ +RL+G+ ++ ++ K
Sbjct: 292 IKYEDFTKITRSLSLEHYIDEYNDIRRGIDNLLRNVEMNGKQIRLLGVTISNLSDKK 348
>gi|418568277|ref|ZP_13132626.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21272]
gi|371980042|gb|EHO97258.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21272]
Length = 356
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 192/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVV--DYQNVHDILMTLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI ++ +K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|118497578|ref|YP_898628.1| DNA polymerase IV [Francisella novicida U112]
gi|195536274|ref|ZP_03079281.1| ImpB/MucB/SamB family protein [Francisella novicida FTE]
gi|226738234|sp|A0Q6K9.1|DPO4_FRATN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|118423484|gb|ABK89874.1| DNA-damage inducible protein P [Francisella novicida U112]
gi|194372751|gb|EDX27462.1| ImpB/MucB/SamB family protein [Francisella tularensis subsp.
novicida FTE]
Length = 349
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 117/284 (41%), Positives = 168/284 (59%), Gaps = 17/284 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE +NPSLK KP AVG + +I T NY AR +GVR+AMP I
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGVRSAMPTAI 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E S
Sbjct: 65 AMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEYKNSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ ++ V +F+ LP+
Sbjct: 124 LIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQ--VDSFVKDLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP 338
+K+ G+GKV++ L+ + TC + LQ+ SL L F + + S G+ +
Sbjct: 182 KKLFGVGKVSQEKLK-TMNVETCLD-LQQLSLATLLDKFGKFGNNLY-SYARGIDNREVN 238
Query: 339 QARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKE 379
R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 239 PVRIRKSVSVENTY--LEDLKTLNACLEKLPSLYDKLTSRMTEE 280
>gi|417897786|ref|ZP_12541714.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21259]
gi|341849861|gb|EGS90998.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21259]
Length = 356
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 193/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVYSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEKTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDILMTLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+ G+GK ++ ++ D GI ++ +K L +F + + G+ +
Sbjct: 181 GEFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|431760524|ref|ZP_19549122.1| DNA polymerase IV [Enterococcus faecium E3346]
gi|430623868|gb|ELB60539.1| DNA polymerase IV [Enterococcus faecium E3346]
Length = 372
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 198/363 (54%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 3 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 62
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD
Sbjct: 63 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLD 122
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ +++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 123 VTENKINCK----SAIKIARMIQANIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 178
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 179 APQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGY 234
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 235 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQ 292
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 293 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLT 352
Query: 439 QFN 441
+
Sbjct: 353 NLD 355
>gi|430833777|ref|ZP_19451788.1| DNA polymerase IV [Enterococcus faecium E0679]
gi|430839165|ref|ZP_19457107.1| DNA polymerase IV [Enterococcus faecium E0688]
gi|430859625|ref|ZP_19477234.1| DNA polymerase IV [Enterococcus faecium E1552]
gi|430486182|gb|ELA63050.1| DNA polymerase IV [Enterococcus faecium E0679]
gi|430491162|gb|ELA67644.1| DNA polymerase IV [Enterococcus faecium E0688]
gi|430543162|gb|ELA83237.1| DNA polymerase IV [Enterococcus faecium E1552]
Length = 372
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 198/363 (54%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE ++P +G P+ + G ++ TANYEA
Sbjct: 3 LQFPLHNDTSRKIIHIDMDAFFASVEERNHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 62
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD
Sbjct: 63 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLD 122
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 123 VTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 178
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 179 APQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGY 234
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 235 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQ 292
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 293 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLT 352
Query: 439 QFN 441
+
Sbjct: 353 NLD 355
>gi|384550711|ref|YP_005739963.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302333560|gb|ADL23753.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
Length = 356
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 191/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASNRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQFIRKDILEQTQLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYRNVHDILMALDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI T +++ K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHD-HGIFTGKDLYNKSEFELIHLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 TRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAEGLNKLQKSAKTVTVKIKTHQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS DI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSENDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|423295136|ref|ZP_17273263.1| DNA polymerase IV [Bacteroides ovatus CL03T12C18]
gi|392673652|gb|EIY67108.1| DNA polymerase IV [Bacteroides ovatus CL03T12C18]
Length = 363
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 127/349 (36%), Positives = 197/349 (56%), Gaps = 18/349 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEARR+GVR+AM A
Sbjct: 4 RKIIHIDMDAFYASVEQRDNPELRGKPLAVGHAEERGVVAAASYEARRYGVRSAMASQKA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+LIFVP Y S ++F +Y SLDEA+LD+TE ++ ++ ++
Sbjct: 64 KRLCPQLIFVPGRMDVYKSVSRQIHEIFHEYTDIIEPLSLDEAFLDVTENKKDISLA-VD 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+E++ + E+ L SAGV+ N+ LAK+ SD KP+G + ++ + FI+ LPI
Sbjct: 123 IAKEIKQKIREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPEQ--ALDFIARLPIE 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+G VT + + GI+ + L+K SL L A F + A ++ G+
Sbjct: 181 SFWGVGPVTAKKMH-LLGIHNGLQ-LRKCSLEMLTAHFGKAGALYY-ECSRGIDERPVEA 237
Query: 340 ARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKSI ERT ++ + +L +A L +Q++ +G TLTLK+K F
Sbjct: 238 IRIRKSIGCERTLERDISARSSVIIELYHVAVELIERLQRKDFKGNTLTLKIKFHDFSQI 297
Query: 399 TRAVTLQKYISSSEDILKHASVLLKA----ELPVSLRLIGLRVTQFNED 443
TR++T + +++ + +L A LLK + P+ RLIGL V+ E+
Sbjct: 298 TRSLTQSQELTTLDRVLPLAKELLKCVEFEQHPI--RLIGLSVSNPKEE 344
>gi|296877987|ref|ZP_06902006.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP07]
gi|296431055|gb|EFH16883.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP07]
Length = 366
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/357 (34%), Positives = 195/357 (54%), Gaps = 24/357 (6%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
+L R +H+DMDAFYA++E N LKG+P+ VG + ++ T +YEAR+FG+ +AMP
Sbjct: 3 ELHRKIIHIDMDAFYASIEQRDNKKLKGRPVIVGGNPQSRGVVATCSYEARKFGIHSAMP 62
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
+A CP +FV F Y S+ R +F +Y SLDEAYLD+T+ ++ I
Sbjct: 63 SAVAYNRCPYAVFVRPRFDVYKSVSEQIRDIFYRYTDLVEPLSLDEAYLDVTK--NKKNI 120
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 276
S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KPNG V+ + F+
Sbjct: 121 DSSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLKKPNGLTVITEEN--AQDFLD 178
Query: 277 SLPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLLCAVFSHSTADFFLSVGLG 331
LP+ K G+GKVT + L+++ GI T C + + L +F + + G
Sbjct: 179 KLPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----LENIFKKRGYELY-KFARG 232
Query: 332 LGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 389
+ R RKS+ +E T S + D+ L E+ E + ++ G+TLTLK
Sbjct: 233 IDDRPVEPNRVRKSVGAETTLSHNLNIDEEETRNILDELCEEVCHRLKSSEKFGKTLTLK 292
Query: 390 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLK-AEL-PVSLRLIGLRVTQFNEDK 444
+K F TR+++L+ YI DI + LL+ E+ +RL+G+ ++ ++ K
Sbjct: 293 IKYEDFTKITRSLSLEHYIDEYNDIRRGIDNLLRNVEMNGKQIRLLGVTISNLSDKK 349
>gi|410728840|ref|ZP_11366928.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Clostridium sp. Maddingley MBC34-26]
gi|410596394|gb|EKQ51063.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Clostridium sp. Maddingley MBC34-26]
Length = 375
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/358 (34%), Positives = 195/358 (54%), Gaps = 13/358 (3%)
Query: 98 EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRA 154
E T + LHVDMDAF+A+VE NP L+GKP+ VG +S ++ T +YEAR+FGV +
Sbjct: 23 EVTIKMENQILHVDMDAFFASVEQRDNPELRGKPVIVGGISERGVVSTCSYEARKFGVHS 82
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AMP F+AR+ CP IFV + +YT S K+ + P S+DE +LD+++
Sbjct: 83 AMPIFMAREKCPNGIFVSGRYGRYTKISQEIFKILNEVTPLIEQVSIDEGFLDLSQ---G 139
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 274
+ G+E A ++ VY+E GLT S G++ N+ LAK+ SD NKPNG + + + + F
Sbjct: 140 KIKDGMEAARYIKNKVYKEVGLTLSIGISYNKFLAKLASDWNKPNGIKEIKKEMLPDILF 199
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLG 333
LPI KI G+GKV+ ++ GI +++ + + + + G+
Sbjct: 200 --PLPISKIHGLGKVSVAKFNNM-GIYYIKDLYNIPKEFYIEYLGKNGMEIYERI-RGVD 255
Query: 334 STNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
+ R RKS+ E+T T++K L + E + + + ++ + G+T+TLK KT
Sbjct: 256 NRKVENIRERKSVGKEKTLKFDTKNKEELREYIKEFSYEIEEVLSRKNVIGKTVTLKFKT 315
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVRAPS 449
FE TR+ TL YI + +I K A +L EL +RLIG+ ++ F E ++ S
Sbjct: 316 KDFENHTRSKTLNNYIGTQREIFKVAEELLESEELNEEVRLIGVSISSFKETEIEQIS 373
>gi|332185220|ref|ZP_08386969.1| impB/mucB/samB family protein [Sphingomonas sp. S17]
gi|332014944|gb|EGI57000.1| impB/mucB/samB family protein [Sphingomonas sp. S17]
Length = 370
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 180/330 (54%), Gaps = 8/330 (2%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGF 159
++R +HVDMDAFYA+VE +P L+G+P+AVG ++ A+YEAR FGVR+AMP
Sbjct: 10 INRKIIHVDMDAFYASVEQRDDPGLRGRPVAVGGSRARGVVAAASYEARSFGVRSAMPSV 69
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
A + CP+LIFVP F Y S R +F +Y SLDEAYLD+TE G S
Sbjct: 70 TALRRCPDLIFVPPRFDVYRSISQQIRAIFARYTDLIEPLSLDEAYLDVTEDRAGLG-SA 128
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IAE +R ++ E GLT SAGV+ N+ +AK+ SD NKP+G V+P F+++LP
Sbjct: 129 TAIAEAIRAAILAETGLTASAGVSYNKFIAKLASDQNKPDGICVIPPHHGP--GFVAALP 186
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+++ G+G VT + + GI T ++ + S A++ G+
Sbjct: 187 VKRFHGVGPVTARKM-EALGILTGADLRDQPRDFLHRHFGSYAEYLYGAARGIDHRPVRA 245
Query: 340 ARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R KS+ +ERTF ++ L+ L ++ E +++ G GRT+TLKL+ + F
Sbjct: 246 QRVAKSVGAERTFETDLSERDALHAALEKVVEAAWIRIERSGAIGRTVTLKLRYSDFRTI 305
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV 428
TRA + + ++ L LL +LP+
Sbjct: 306 TRARSSSQGVTDRASFLAMGLALLDQQLPI 335
>gi|430853560|ref|ZP_19471288.1| DNA polymerase IV [Enterococcus faecium E1258]
gi|430540641|gb|ELA80843.1| DNA polymerase IV [Enterococcus faecium E1258]
Length = 372
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 197/363 (54%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 3 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 62
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD
Sbjct: 63 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLD 122
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 123 VTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 178
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 179 APQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGY 234
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 235 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQ 292
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 293 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEVLGVEKGIRLLGITLT 352
Query: 439 QFN 441
+
Sbjct: 353 NLD 355
>gi|392531944|ref|ZP_10279081.1| DNA polymerase IV [Carnobacterium maltaromaticum ATCC 35586]
Length = 376
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/359 (34%), Positives = 193/359 (53%), Gaps = 24/359 (6%)
Query: 98 EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEARRF 150
E RD SR +HVDMDAFYA+VE NP LKGKP+ + G ++ TANYEAR+F
Sbjct: 9 EPVRDTSRKIIHVDMDAFYASVEERENPDLKGKPLVIARHPKDNGGRGVVTTANYEARKF 68
Query: 151 GVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE 210
G+ +AM A +LCP IFVP Y+ S R++F Y SLDEAYLD+TE
Sbjct: 69 GIHSAMSAQKAYELCPHAIFVPGRHELYSEISAEIREIFKHYTDLIEPLSLDEAYLDVTE 128
Query: 211 VCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMA 270
++ S +IA ++ ++E LTCSAGV+ N+ +AK+ SD KP G V+P ++
Sbjct: 129 -NKKNLKSATQIAYLIQKEIWETLHLTCSAGVSYNKFIAKLASDYKKPAGITVIPPEK-- 185
Query: 271 VMTFISSLPIRKIGGIGKVTEHIL--RDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLS 327
+ F+ +L I K G+GK T + R++F ++ + L L +F +
Sbjct: 186 ALDFLKALEIGKFYGVGKKTAEKMYERNIF---NGADLYKLSELELIHLFGKMGYSLYRK 242
Query: 328 VGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGR 384
V G+ ++ +R RKS+ E T+ TE++ L +L +A + + + + G+
Sbjct: 243 V-RGIDNSAVQPSRERKSVGREHTYGTPLTTEEEVL--SELRFLAGKVHSSLTRNQKHGK 299
Query: 385 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 441
+ LKL+ +E T+ ++L Y+ SE+I HA L + L +RL+G+ +T +
Sbjct: 300 IVVLKLRNTDYETMTKRISLPAYVKGSEEIFFHARNLWEEVGSLDKGIRLVGITITGLD 358
>gi|431751229|ref|ZP_19539921.1| DNA polymerase IV [Enterococcus faecium E2620]
gi|430615883|gb|ELB52821.1| DNA polymerase IV [Enterococcus faecium E2620]
Length = 373
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/363 (34%), Positives = 196/363 (53%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 4 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 63
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A KLCP+ IF P D KY+ S R+VF Y S+DEAYLD
Sbjct: 64 RKFGIHSAMSAQKAYKLCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYLD 123
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 124 VTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 179
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + + L F
Sbjct: 180 APQD---AVPFLKTLPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMTLIRNFGKMGY 235
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 236 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRVQ 293
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 294 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLT 353
Query: 439 QFN 441
+
Sbjct: 354 NLD 356
>gi|380694159|ref|ZP_09859018.1| DNA damage-inducible protein [Bacteroides faecis MAJ27]
Length = 363
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 196/351 (55%), Gaps = 22/351 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEARR+GVR+AM A
Sbjct: 4 RKIIHIDMDAFYASVEQRDNPELRGKPLAVGHAEERGVVAAASYEARRYGVRSAMASQKA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+KLCP+LIFV Y S ++F +Y SLDEA+LD+TE ++GIS +
Sbjct: 64 KKLCPQLIFVHGRMDVYKSVSRQIHEIFHEYTDIIEPLSLDEAFLDVTE--NKKGISLAV 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+E++ + +E L SAGV+ N+ LAK+ SD KP+G + ++ + FI+ LPI
Sbjct: 122 DIAKEIKLRIRQELNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPEQ--ALDFIARLPI 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP 338
G+G VT + + GI+ + L+K SL L A F + G+
Sbjct: 180 ESFWGVGPVTAKKMH-LLGIHNGLQ-LRKCSLEMLTAHFG-KVGSLYYECSRGIDERPVE 236
Query: 339 QARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKSI ERT ++ +++ +L +A L +Q + +G TLTLK+K F
Sbjct: 237 AVRIRKSIGCERTLEKDISAHSSVII-ELYHVAVELIERLQHKEFKGNTLTLKIKFHDFS 295
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKA----ELPVSLRLIGLRVTQFNED 443
TR++T + +++ + +L A LLK+ + P+ RLIGL V+ E+
Sbjct: 296 QITRSITQSQELTTLDRVLPLAKELLKSVEYEQHPI--RLIGLSVSNPKEE 344
>gi|255026659|ref|ZP_05298645.1| DNA polymerase IV [Listeria monocytogenes FSL J2-003]
Length = 356
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 192/351 (54%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKPAGITVVAPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYHLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|49484136|ref|YP_041360.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA252]
gi|257426027|ref|ZP_05602449.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428700|ref|ZP_05605095.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431310|ref|ZP_05607686.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257436932|ref|ZP_05612974.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M876]
gi|282904526|ref|ZP_06312411.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C160]
gi|282906299|ref|ZP_06314151.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Btn1260]
gi|282909215|ref|ZP_06317031.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911520|ref|ZP_06319320.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914693|ref|ZP_06322478.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M899]
gi|282919730|ref|ZP_06327462.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C427]
gi|282925134|ref|ZP_06332794.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C101]
gi|283958656|ref|ZP_06376102.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus A017934/97]
gi|293507770|ref|ZP_06667612.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 58-424]
gi|293510787|ref|ZP_06669489.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M809]
gi|293539327|ref|ZP_06672006.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M1015]
gi|295428477|ref|ZP_06821104.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297590052|ref|ZP_06948692.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
MN8]
gi|384867134|ref|YP_005747330.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH60]
gi|387603227|ref|YP_005734748.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST398]
gi|404479241|ref|YP_006710671.1| DNA polymerase IV [Staphylococcus aureus 08BA02176]
gi|415684801|ref|ZP_11449864.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|417886924|ref|ZP_12531064.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21195]
gi|418565646|ref|ZP_13130043.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21264]
gi|418581874|ref|ZP_13145954.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418596890|ref|ZP_13160434.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21342]
gi|418600790|ref|ZP_13164241.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21345]
gi|418892785|ref|ZP_13446894.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418900449|ref|ZP_13454507.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909822|ref|ZP_13463813.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418917922|ref|ZP_13471878.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418923666|ref|ZP_13477579.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418982961|ref|ZP_13530666.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418985616|ref|ZP_13533303.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|81650794|sp|Q6GFG2.1|DPO4_STAAR RecName: Full=DNA polymerase IV; Short=Pol IV
gi|49242265|emb|CAG40972.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271170|gb|EEV03327.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274344|gb|EEV05856.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257277959|gb|EEV08615.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257283721|gb|EEV13846.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M876]
gi|282313092|gb|EFB43490.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C101]
gi|282316368|gb|EFB46745.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C427]
gi|282321407|gb|EFB51733.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M899]
gi|282324529|gb|EFB54841.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326783|gb|EFB57080.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330496|gb|EFB60013.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Btn1260]
gi|282595082|gb|EFC00049.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C160]
gi|283471165|emb|CAQ50376.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST398]
gi|283789696|gb|EFC28518.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus A017934/97]
gi|290919862|gb|EFD96931.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M1015]
gi|291094833|gb|EFE25101.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 58-424]
gi|291466418|gb|EFF08942.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M809]
gi|295127459|gb|EFG57098.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297577180|gb|EFH95894.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
MN8]
gi|312437639|gb|ADQ76710.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH60]
gi|315193424|gb|EFU23821.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|341858556|gb|EGS99345.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21195]
gi|371972901|gb|EHO90269.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21264]
gi|374396472|gb|EHQ67709.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21342]
gi|374400687|gb|EHQ71795.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21345]
gi|377702813|gb|EHT27131.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377704176|gb|EHT28487.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377706296|gb|EHT30595.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377711424|gb|EHT35657.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377729387|gb|EHT53482.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377733260|gb|EHT57305.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377749229|gb|EHT73180.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377750768|gb|EHT74705.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|404440730|gb|AFR73923.1| DNA polymerase IV [Staphylococcus aureus 08BA02176]
Length = 356
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 191/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYRNVHDILMTLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI ++ +K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 TRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|417926930|ref|ZP_12570318.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|340764804|gb|EGR87330.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
Length = 365
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 133/368 (36%), Positives = 203/368 (55%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPVLKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY R +F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPQAIFISGNYEKYRSVGQEIRHIFKRYTDLVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ ++ E LTCSAGV+ N+ LAK+ SD KP+G VLP D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQD---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
+F++ LPI K G+GK + L ++ GI T +++L+ V + D F G L
Sbjct: 184 SFLADLPIEKFHGVGKKSVEKLHEM-GIYTGQDLLE-------VPEMTLIDHFGRFGFNL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +++P R RKSI SERT++ LLY++ AEI A ++A +Q
Sbjct: 236 YRKARGISHSPVKPNRIRKSIGSERTYA-----KLLYQEADIKAEISKNARRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + + I + A + E V +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRDAAQIEQVAESIFDTLPEHTVGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDK+
Sbjct: 351 TNL-EDKM 357
>gi|387126480|ref|YP_006295085.1| DNA polymerase IV [Methylophaga sp. JAM1]
gi|386273542|gb|AFI83440.1| DNA polymerase IV [Methylophaga sp. JAM1]
Length = 362
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 126/348 (36%), Positives = 194/348 (55%), Gaps = 20/348 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +HVDMDAFYA+VE P LKGKP+ VG + ++ +YEAR+FG+ +AM
Sbjct: 5 RKIIHVDMDAFYASVEQRDFPELKGKPLIVGGQPDSRGVVAACSYEARKFGIHSAMASSR 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A +LCPE IFV F Y S+ R++F +Y SLDEAYLD+T G S
Sbjct: 65 AYRLCPEAIFVRPRFDAYKEVSNQIREIFWRYASEVEPLSLDEAYLDVTYTESFNG-SAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+ +++ + E GLT SAGV+ N+ LAK+ SD++KP+G +++ ++ F++ LPI
Sbjct: 124 LIAKAIKSEILAETGLTASAGVSYNKFLAKIASDMDKPDGLYLIRPEQG--QEFVNKLPI 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K GIG TE ++++ G++T ++ QK + L F S ++ ++ +
Sbjct: 182 GKFHGIGPATEIKMKNL-GVHTGHDLRQKSLTELSERFGKS-GQYYYNIARAIDDRPVRS 239
Query: 340 ARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ E TF+ ED L L ++AE + + K ++GRT+T+K+K A F+
Sbjct: 240 QRIRKSLGKETTFA--EDILSIPDLNNILLDVAEQVLGSLSKHNMQGRTVTVKVKYADFQ 297
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAEL---PVSLRLIGLRVTQFN 441
TRA TL I ++ +L + E PV RL+GL ++ F+
Sbjct: 298 QVTRAQTLDHSIGFADLQEWLPKLLARTEAGHKPV--RLVGLSLSGFD 343
>gi|257885067|ref|ZP_05664720.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
gi|257820919|gb|EEV48053.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
Length = 373
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 197/363 (54%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 4 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 63
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD
Sbjct: 64 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLD 123
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 124 VTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 179
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 180 APQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGY 235
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 236 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQ 293
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 294 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEVLGVEKGIRLLGITLT 353
Query: 439 QFN 441
+
Sbjct: 354 NLD 356
>gi|386054230|ref|YP_005971788.1| DNA polymerase IV [Listeria monocytogenes Finland 1998]
gi|346646881|gb|AEO39506.1| DNA polymerase IV [Listeria monocytogenes Finland 1998]
Length = 356
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 126/350 (36%), Positives = 190/350 (54%), Gaps = 19/350 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+T+ ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTK--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A E++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATMVAREIQQTIYRELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEE--MLQKGSLLCAVFSHSTADFFLSVGLGLG 333
+P+ K G+GKVT L + GI T + M + L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGADLKMWSEWDLIRELHKHGYHLYRHVRGRSNN 235
Query: 334 STNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL+
Sbjct: 236 IVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEERLIKLQKHGKTVVLKLRY 293
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 294 SDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|169632191|ref|YP_001705927.1| DNA polymerase IV [Acinetobacter baumannii SDF]
gi|169150983|emb|CAO99608.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter baumannii]
Length = 363
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 126/340 (37%), Positives = 191/340 (56%), Gaps = 16/340 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P L+ P+ + + ++I A+Y AR FG+R+AM A
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLRHLPVVISSHHPRAVIAAASYPAREFGLRSAMSMSQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S E
Sbjct: 62 RKLCPQVVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIA-SATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A +R ++ + GLT SAGVAPN+ LAKV SD NKPNG FV+ ++A +FI LP++
Sbjct: 121 VAMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNGLFVIKPSQVA--SFIQDLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP-Q 339
KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P Q
Sbjct: 179 KIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPVQ 234
Query: 340 A-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
A R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 235 AERARQQISKETTFDSDFTLAQCQSYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQTL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGL 435
+ + + I S +D+++ +LL + +P RLIG+
Sbjct: 295 QHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGV 334
>gi|418563747|ref|ZP_13128181.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21262]
gi|371970362|gb|EHO87784.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21262]
Length = 356
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/347 (35%), Positives = 192/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDILMTLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI ++ +K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ + +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRVRKSVGTERTFATDMNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|414177211|ref|ZP_11431323.1| DNA polymerase IV 3 [Afipia broomeae ATCC 49717]
gi|410885137|gb|EKS32954.1| DNA polymerase IV 3 [Afipia broomeae ATCC 49717]
Length = 361
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/348 (35%), Positives = 191/348 (54%), Gaps = 14/348 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAFYA+VE +P L+G+P+AVG ++ A+YEAR FGVR+AM
Sbjct: 8 IQRKIIHVDMDAFYASVEQRDDPHLRGRPVAVGGSEARGVVAAASYEARAFGVRSAMASI 67
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS- 218
A++ CP+LIFVP F Y S R++F ++ SLDEAYLD++E + GI
Sbjct: 68 TAKRRCPDLIFVPPRFDVYRAVSAQIREIFAEHTDLIEPLSLDEAYLDVSE--NKHGIPI 125
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
EIA +R + E GL SAG++ + LAK+ SD+NKPNGQ V+ + +F+ +L
Sbjct: 126 ASEIATIVRARIKEVTGLNASAGISYCKFLAKMASDLNKPNGQAVITPSKGP--SFVEAL 183
Query: 279 PIRKIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
++K G+G T E + R GI+T ++ K ++ + G+ +
Sbjct: 184 AVKKFHGVGPATAEKMGR--LGIHTGADLKAKPLAFLQQHFGKAGGWYYRIARGIDNRPV 241
Query: 338 PQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKSI +E TF D A +Y +++ + + + + LR RT+TLK+K A F+
Sbjct: 242 EPDRPRKSIGAEDTFHTDLFDSASVYSEISALVAKVWRLCEAKQLRARTVTLKVKYADFQ 301
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 442
TR+ T+ + S+ + + + LL PV +RL+G+ V+ +
Sbjct: 302 RITRSRTVSQPFQSAAQVDELSRALLDPLFPVEKGIRLVGVTVSSLED 349
>gi|69246405|ref|ZP_00603927.1| DNA-directed DNA polymerase [Enterococcus faecium DO]
gi|406580418|ref|ZP_11055611.1| DNA polymerase IV [Enterococcus sp. GMD4E]
gi|406582747|ref|ZP_11057845.1| DNA polymerase IV [Enterococcus sp. GMD3E]
gi|406584910|ref|ZP_11059906.1| DNA polymerase IV [Enterococcus sp. GMD2E]
gi|410936970|ref|ZP_11368832.1| DNA-directed DNA polymerase IV [Enterococcus sp. GMD5E]
gi|430824014|ref|ZP_19442581.1| DNA polymerase IV [Enterococcus faecium E0120]
gi|430844890|ref|ZP_19462787.1| DNA polymerase IV [Enterococcus faecium E1050]
gi|430846835|ref|ZP_19464689.1| DNA polymerase IV [Enterococcus faecium E1133]
gi|430851098|ref|ZP_19468853.1| DNA polymerase IV [Enterococcus faecium E1185]
gi|430856102|ref|ZP_19473806.1| DNA polymerase IV [Enterococcus faecium E1392]
gi|431237138|ref|ZP_19503281.1| DNA polymerase IV [Enterococcus faecium E1622]
gi|431264073|ref|ZP_19505961.1| DNA polymerase IV [Enterococcus faecium E1623]
gi|431382817|ref|ZP_19511410.1| DNA polymerase IV [Enterococcus faecium E1627]
gi|431522829|ref|ZP_19516778.1| DNA polymerase IV [Enterococcus faecium E1634]
gi|431536394|ref|ZP_19517354.1| DNA polymerase IV [Enterococcus faecium E1731]
gi|431701816|ref|ZP_19524925.1| DNA polymerase IV [Enterococcus faecium E1904]
gi|431744892|ref|ZP_19533757.1| DNA polymerase IV [Enterococcus faecium E2071]
gi|431779259|ref|ZP_19567455.1| DNA polymerase IV [Enterococcus faecium E4389]
gi|447913406|ref|YP_007394818.1| DNA polymerase IV [Enterococcus faecium NRRL B-2354]
gi|68195277|gb|EAN09729.1| DNA-directed DNA polymerase [Enterococcus faecium DO]
gi|404453795|gb|EKA00827.1| DNA polymerase IV [Enterococcus sp. GMD4E]
gi|404457737|gb|EKA04267.1| DNA polymerase IV [Enterococcus sp. GMD3E]
gi|404463129|gb|EKA08825.1| DNA polymerase IV [Enterococcus sp. GMD2E]
gi|410734563|gb|EKQ76482.1| DNA-directed DNA polymerase IV [Enterococcus sp. GMD5E]
gi|430441398|gb|ELA51495.1| DNA polymerase IV [Enterococcus faecium E0120]
gi|430496321|gb|ELA72426.1| DNA polymerase IV [Enterococcus faecium E1050]
gi|430534502|gb|ELA74946.1| DNA polymerase IV [Enterococcus faecium E1185]
gi|430538389|gb|ELA78681.1| DNA polymerase IV [Enterococcus faecium E1133]
gi|430545391|gb|ELA85365.1| DNA polymerase IV [Enterococcus faecium E1392]
gi|430572702|gb|ELB11552.1| DNA polymerase IV [Enterococcus faecium E1622]
gi|430576509|gb|ELB15160.1| DNA polymerase IV [Enterococcus faecium E1623]
gi|430581188|gb|ELB19635.1| DNA polymerase IV [Enterococcus faecium E1627]
gi|430585011|gb|ELB23320.1| DNA polymerase IV [Enterococcus faecium E1634]
gi|430594881|gb|ELB32833.1| DNA polymerase IV [Enterococcus faecium E1731]
gi|430597101|gb|ELB34905.1| DNA polymerase IV [Enterococcus faecium E1904]
gi|430604817|gb|ELB42247.1| DNA polymerase IV [Enterococcus faecium E2071]
gi|430642524|gb|ELB78301.1| DNA polymerase IV [Enterococcus faecium E4389]
gi|445189115|gb|AGE30757.1| DNA polymerase IV [Enterococcus faecium NRRL B-2354]
Length = 372
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 197/363 (54%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 3 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 62
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD
Sbjct: 63 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLD 122
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 123 VTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 178
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 179 APQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGY 234
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 235 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQ 292
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 293 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLT 352
Query: 439 QFN 441
+
Sbjct: 353 NLD 355
>gi|430837087|ref|ZP_19455063.1| DNA polymerase IV [Enterococcus faecium E0680]
gi|430487868|gb|ELA64576.1| DNA polymerase IV [Enterococcus faecium E0680]
Length = 373
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 198/363 (54%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE ++P +G P+ + G ++ TANYEA
Sbjct: 4 LQFPLHNDTSRKIIHIDMDAFFASVEERNHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 63
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD
Sbjct: 64 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLD 123
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 124 VTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 179
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 180 APQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGY 235
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 236 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQ 293
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 294 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLT 353
Query: 439 QFN 441
+
Sbjct: 354 NLD 356
>gi|293550615|ref|ZP_06673283.1| DNA polymerase IV [Enterococcus faecium E1039]
gi|431444918|ref|ZP_19513647.1| DNA polymerase IV [Enterococcus faecium E1630]
gi|291603236|gb|EFF33420.1| DNA polymerase IV [Enterococcus faecium E1039]
gi|430586080|gb|ELB24346.1| DNA polymerase IV [Enterococcus faecium E1630]
Length = 373
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 198/363 (54%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 4 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 63
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD
Sbjct: 64 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLD 123
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ +++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 124 VTENKINCK----SAIKIARMIQANIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 179
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 180 APQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGY 235
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 236 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQ 293
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 294 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLT 353
Query: 439 QFN 441
+
Sbjct: 354 NLD 356
>gi|427426239|ref|ZP_18916302.1| putative DNA polymerase IV [Acinetobacter baumannii WC-136]
gi|425696945|gb|EKU66638.1| putative DNA polymerase IV [Acinetobacter baumannii WC-136]
Length = 351
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 123/345 (35%), Positives = 189/345 (54%), Gaps = 14/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LK P+ + + ++I A+Y AR FG+R+AM A
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLKHLPVVISSHHPRAVIAAASYPAREFGLRSAMSMSQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S E
Sbjct: 62 RKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVTENLKQIA-SATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+ ++A TFI LP++
Sbjct: 121 VAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVA--TFIQDLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G+GKVT+ L+ + ++T + LQK ++L F +L G+
Sbjct: 179 KIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAVLVHHFGKYGQQLYLYAQ-GIDHRPVQA 235
Query: 340 ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 236 ERARQQISKETTFDSDFTLAQCQPYWQGLAEKVWQTLEKKQLNARGVNIKLKLKNFQTLQ 295
Query: 400 RAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 441
+ + ++ I S +D+++ +LL + ++P RLIG+ V Q
Sbjct: 296 HSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|291457168|ref|ZP_06596558.1| DNA-damage-inducible protein P [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|417941850|ref|ZP_12585131.1| DNA polymerase IV (Pol IV) [Bifidobacterium breve CECT 7263]
gi|291381003|gb|EFE88521.1| DNA-damage-inducible protein P [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|376167838|gb|EHS86657.1| DNA polymerase IV (Pol IV) [Bifidobacterium breve CECT 7263]
Length = 432
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/358 (33%), Positives = 191/358 (53%), Gaps = 22/358 (6%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGT--MSMICTANYEARRFGVRAAMPGFIARKLC 165
LH+DMDAFYA++E NP LKGKP+ +GT S++ A+YEARR+G+ +AMP A +LC
Sbjct: 32 LHIDMDAFYASLEVARNPGLKGKPVIIGTGPRSVVSAASYEARRYGINSAMPAARAHQLC 91
Query: 166 PELIFVPTDFTKYTYYSD-LTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 224
P+ +F+P D Y S + +VF F S+DE Y+D++ E I
Sbjct: 92 PDGVFLPVDMAYYRMMSHRIMHEVFLTITDQFEQVSVDEGYMDVSGALLEWDKPS-AIGA 150
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 284
+R V E +TCS G+A N+L+AK+ S KPNG ++P R A F+ +P+R I
Sbjct: 151 WIRQQVAERFNVTCSVGIACNKLVAKMASTNAKPNGMLLIPAARSA--QFVQMMPLRGIP 208
Query: 285 GIGKVTEHILRDVFGINTCEEMLQ--KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARF 342
GIG E L + +G+++ E+ Q + +L+ A S + A + GL S R
Sbjct: 209 GIGPSLEKRL-NAWGVHSVAELAQMDEAALIQATGSPAAARGLWAASHGLDSREIATTRE 267
Query: 343 RKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRA 401
KSI SERT + T D ++ R L + ++ ++++GL RTLT+KL+ A +TR+
Sbjct: 268 EKSIGSERTLTEDTRDMHIVCRLLRSACDEVARTLRRKGLVARTLTVKLRFADLSYQTRS 327
Query: 402 VTLQKYISSSEDI----LKHASVLL--------KAELPVSLRLIGLRVTQFNEDKVRA 447
T+++ ++ + ++ ++L LP +RL G+ + +E A
Sbjct: 328 FTMEQPTDTASTLYPECVRQLKIMLGIPANAEPTTPLPKLIRLAGMSTSSLSEAHATA 385
>gi|416110629|ref|ZP_11592173.1| DNA polymerase IV [Riemerella anatipestifer RA-YM]
gi|315023043|gb|EFT36056.1| DNA polymerase IV [Riemerella anatipestifer RA-YM]
Length = 348
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 114/314 (36%), Positives = 179/314 (57%), Gaps = 9/314 (2%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVGT--MSMICTANYEARRFGVRAAMPGFIARKLCPELI 169
MDAFYA+VE P LKGKP+ VG ++ A+YEAR++GVR+AM +A+K CP++I
Sbjct: 1 MDAFYASVEQRDFPELKGKPVVVGGEHRGVVAAASYEARKYGVRSAMSSVVAKKKCPQII 60
Query: 170 FVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SGIEIAEELRT 228
FV F +Y S+ R +F +Y SLDEAYLD+T ++GI S IA+E+R
Sbjct: 61 FVKPRFHRYKEVSEQIRTIFFEYTDLVEPLSLDEAYLDVTH--NKKGIVSANLIAKEIRQ 118
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
++E GLT SAG++ N+ LAKV SDINKPNGQ + + V++F+ +LPI + GIG
Sbjct: 119 KIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIHPTK--VLSFLENLPIERFYGIGN 176
Query: 289 VTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISS 348
VT + + + GI +++ +K + + G+ + R KS+
Sbjct: 177 VTANKMYQL-GIYKGKDLKEKPLEYLVTHFGKMGGHYYDIVRGIHRSEVKPHRIAKSVGV 235
Query: 349 ERTFSVTEDKAL-LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKY 407
E T+ D + ++L +A+ L ++K+ ++G++LTLK+K F + TR+ T Y
Sbjct: 236 EHTYVDDIDTEQDIDKQLMRLAQELYRRIEKKKVKGKSLTLKIKYKDFSLFTRSKTQNLY 295
Query: 408 ISSSEDILKHASVL 421
+ E++ + A L
Sbjct: 296 FETEEEMYQTARFL 309
>gi|390947019|ref|YP_006410779.1| nucleotidyltransferase/DNA polymerase [Alistipes finegoldii DSM
17242]
gi|390423588|gb|AFL78094.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Alistipes finegoldii DSM 17242]
Length = 358
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 191/340 (56%), Gaps = 16/340 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P +G+P+AVG ++ TA+YEAR +GVR+A+ +A
Sbjct: 4 RKIIHIDMDAFYASVEQRDRPEYRGRPIAVGHDGPRGVVATASYEARPYGVRSAISSALA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP LIFVP F Y S R VF Y SLDEA+LD+T + S
Sbjct: 64 KRLCPNLIFVPARFDVYKEVSRQIRAVFRDYTELVEPLSLDEAFLDVTHLR-----SATL 118
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
A E++ + E GLT SAG++ N++LAK+ SD KP+G F +P + + F+++LPI
Sbjct: 119 AAREIKARILAETGLTASAGISVNKMLAKIASDYRKPDGLFTIPPGQ--IEEFVAALPIE 176
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+ GIG+VT + + GI+T ++ L+ + L F + ++ G+
Sbjct: 177 RFFGIGEVTARKMHGM-GIHTGADLRLRDEAELVRHFGKAGHSYY-GYARGIDEREVTPN 234
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TF+ T+D+ L +L+ + E + + + +G+T+ LKLK +F T
Sbjct: 235 RIRKSLGAETTFAEDTDDREQLRLELSAVREEVWNRLMRHEFKGKTVVLKLKFDNFRQIT 294
Query: 400 RAVTLQKYISSSEDILKHASVLLKAE--LPVSLRLIGLRV 437
R+ TL ++S+E + + + LL A +RLIGL V
Sbjct: 295 RSKTLFAPVNSAETLRQVSEELLAAVDFRGRKIRLIGLTV 334
>gi|359414398|ref|ZP_09206863.1| DNA polymerase IV [Clostridium sp. DL-VIII]
gi|357173282|gb|EHJ01457.1| DNA polymerase IV [Clostridium sp. DL-VIII]
Length = 348
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 195/348 (56%), Gaps = 13/348 (3%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKL 164
LHVDMDAF+A+VE NP LKGKP+ VG +S ++ T +YEAR+FGV +AMP F+AR+
Sbjct: 6 LHVDMDAFFASVEQRDNPELKGKPVIVGGVSERGVVSTCSYEARKFGVHSAMPMFMAREK 65
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 224
CP IFV + +Y+ S K+ + P S+DE +LD++E + G+E A
Sbjct: 66 CPNGIFVSGRYGRYSKVSQEIFKILNEVTPLVEPVSIDEGFLDLSE---GKIKDGMEAAR 122
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 284
++ V++E GLT S G++ N+ LAK+ SD NKPNG + + + + F LPI +I
Sbjct: 123 YIKNRVFKEIGLTISVGISYNKFLAKLASDWNKPNGIKEISKEMIPDILF--PLPISQIH 180
Query: 285 GIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR 343
G+GKV+ L ++ GI +++ F + D + + G+ + R R
Sbjct: 181 GLGKVSAAKLNNM-GIYYIKDLYNMPKEFYIEYFGKNGMDIYDRI-RGIDNRKVEIVRER 238
Query: 344 KSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAV 402
KS+ E T T++K L + E + + + ++ + G+T+TLK KT +FE TR+
Sbjct: 239 KSVGKETTLKFDTKNKEELIEYIKEFSFEIEEILNRKNILGKTVTLKFKTKNFENHTRSK 298
Query: 403 TLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNEDKVRAPS 449
TL YI + ++I K A +L EL +RLIG+ ++ F E ++ S
Sbjct: 299 TLNNYIGNQKEIFKVAEELLESEELNEEVRLIGVSISSFKEQEMEQIS 346
>gi|387824674|ref|YP_005824145.1| DNA polymerase IV [Francisella cf. novicida 3523]
gi|332184140|gb|AEE26394.1| DNA polymerase IV [Francisella cf. novicida 3523]
Length = 351
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 129/344 (37%), Positives = 189/344 (54%), Gaps = 23/344 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE +NPSLK KP AVG ++ +I T NY AR +GVR+AMP I
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGINPNRGVISTCNYIAREYGVRSAMPTAI 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A + CP LI + TDF KY S + R +F + SLDEAYLD+T+V RE S
Sbjct: 65 AMQKCPNLILLNTDFAKYKAASAIIRNIFYSFTDKVEPLSLDEAYLDVTDV-REYKNSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ ++ V FI LP+
Sbjct: 124 LIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQ--VNNFIKDLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLGLGSTNT 337
+K+ G+GKV + L+ + + TC + LQ+ SL A+ F + G+ +
Sbjct: 182 KKLFGVGKVCQEKLKSM-NVETCLD-LQRLSL--AILIDKFGKFGNNLYNYARGIDNREV 237
Query: 338 PQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
RKS+S E T+ ED L KL + + L++ M +E + + +
Sbjct: 238 NPIHIRKSVSVENTY--LEDLKTLEACLEKLPSLYDKLTSRMSEEHYKS---IVGIVVKF 292
Query: 395 FEVRTRAVTLQKYISS-SEDILKHASVLLKAELPVSLRLIGLRV 437
+VR +L + S + LK+ L + +RLIG+ V
Sbjct: 293 TDVRFNKTSLTRVAKSLDKQTLKNLITELYQKQSQPIRLIGIGV 336
>gi|117926811|ref|YP_867428.1| DNA-directed DNA polymerase [Magnetococcus marinus MC-1]
gi|117610567|gb|ABK46022.1| DNA-directed DNA polymerase [Magnetococcus marinus MC-1]
Length = 357
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 126/362 (34%), Positives = 200/362 (55%), Gaps = 19/362 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE P L+GKP+ VG + +++ A+YEAR+FG+ +AMP A
Sbjct: 4 RKIIHIDMDAFFASVEQRDFPHLQGKPVVVGGLGPRAVVAAASYEARQFGIHSAMPMGRA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ LC +LI P Y S +F +Y SLDEAYLD+TE S +
Sbjct: 64 KNLCDQLIIQPGRMQTYKNESHHIHAIFQRYTNLIEPLSLDEAYLDVTENFLNLN-SATQ 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA++++T+++EE LT SAG++ N++LAK+ S +NKPNG ++ ++ A FI +LP++
Sbjct: 123 IAQQIKTAIWEETHLTASAGISVNKMLAKIASAMNKPNGLTLIRPEQAA--QFIDTLPVK 180
Query: 282 KIGGIGKVT-EHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+ GIG+ T E +L+ GI T + Q + + F+ + + +
Sbjct: 181 RFHGIGQRTAERMLQ--LGIETGAHLRQWDRITLIKWFGKAGGFYHELAHNIDNRPVNPN 238
Query: 341 RFRKSISSERTFSVTED---KALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +E TF +D K L+ + L I L + + LRG TLTLK+K A F+
Sbjct: 239 RERKSVGAEHTFD--QDIFAKPLMQQALNTILAELWNRLDQLQLRGSTLTLKIKFADFQQ 296
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQFNEDKVRAPSDPTQK 454
TRA T Q+ IS+ + + + LL+ E P+ +RL+G+ + + A + P Q
Sbjct: 297 ITRAHTAQQIISTQAEAARIITALLQRE-PLYDRGVRLLGISMGHLCSSQT-ATTQPQQL 354
Query: 455 TL 456
+L
Sbjct: 355 SL 356
>gi|402772897|ref|YP_006592434.1| DNA polymerase IV (Pol IV) [Methylocystis sp. SC2]
gi|401774917|emb|CCJ07783.1| DNA polymerase IV (Pol IV) [Methylocystis sp. SC2]
Length = 457
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 128/349 (36%), Positives = 189/349 (54%), Gaps = 16/349 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT---MSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+GKP+AVG ++ A+YEAR FGVR+AMP A
Sbjct: 105 RKIIHVDMDAFYASVEQRDNPELRGKPVAVGGSRERGVVAAASYEARAFGVRSAMPSVTA 164
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CPELIF+ F Y S R +F +Y P SLDEAYLD+TE + +
Sbjct: 165 KRNCPELIFMKPRFDVYKDVSRQIRSIFAEYTPIVEPLSLDEAYLDVTENLKGMA-TATR 223
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAE++R + E GLT SAGV+ N+ LAK+ SD KP+G FV+ +M F+ +L +
Sbjct: 224 IAEDIRARIRAETGLTASAGVSYNKFLAKLASDYRKPDGLFVI-TPKMGP-AFVEALQVG 281
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
K G+G T + + GI T ++ Q + L F S ++ + G+
Sbjct: 282 KFHGVGPATTTKM-NRLGIETGLDLKAQTLAFLQRHFGKSGV-YYYWISRGVDDRPVRPD 339
Query: 341 RFRKSISSERTFSVTEDK---ALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +E TF ED A L I E + + G+RGRT+TLK+K F
Sbjct: 340 RARKSMGAETTF--VEDLFSFAAARAALQPIIEKVWRYCESAGIRGRTVTLKVKYPDFRQ 397
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAEL--PVSLRLIGLRVTQFNEDK 444
TR+ T I++ ++ + LL P+ +RL+G+ ++ ++++
Sbjct: 398 ITRSRTGAATIATQAELAQLVLALLGQVFPAPMGIRLLGVTLSSLSDEQ 446
>gi|254374392|ref|ZP_04989874.1| hypothetical protein FTDG_00559 [Francisella novicida GA99-3548]
gi|151572112|gb|EDN37766.1| hypothetical protein FTDG_00559 [Francisella novicida GA99-3548]
Length = 349
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/284 (41%), Positives = 167/284 (58%), Gaps = 17/284 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE +NPSLK KP AVG + +I T NY AR +GVR+AMP I
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGVRSAMPTAI 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E S
Sbjct: 65 AMQKCPNLILLNTDFAKYKAASTVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEYKNSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+ LP+
Sbjct: 124 LIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPKQ--VDSFVKDLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP 338
+K+ G+GKV++ L+ + TC + LQ+ SL L F + + S G+ +
Sbjct: 182 KKLFGVGKVSQEKLK-TMNVETCLD-LQQLSLATLLDKFGKFGNNLY-SYARGIDNREVN 238
Query: 339 QARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKE 379
R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 239 PVRIRKSVSVENTY--LEDLKTLNACLEKLPSLYDKLTSRMTEE 280
>gi|417752573|ref|ZP_12400765.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|333771630|gb|EGL48550.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
Length = 365
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 200/362 (55%), Gaps = 31/362 (8%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPVLKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY R +F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPQAIFISGNYEKYRSVGQEIRHIFKRYTDLVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ ++ E LTCSAGV+ N+ LAK+ SD KP+G VLP D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQD---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLG 331
+F++ LPI K G+GK + L ++ GI T +++L+ + L F D + G
Sbjct: 184 SFLADLPIEKFHGVGKKSVEKLHEM-GIYTGQDLLEVPEMTLIDHFGRFGFDLYRK-ARG 241
Query: 332 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 385
+ + R RKSI SERT++ LLY++ AEI A ++A +Q G+T
Sbjct: 242 ISHSPVKPNRIRKSIGSERTYA-----KLLYQEADIKAEISKNARRVAALLQDHKKLGKT 296
Query: 386 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFNED 443
+ LK++ A F T+ VTL + + I + A + E V +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRDAAQIEQVAESIFDTLPEHTVGIRLLGVTMTNL-ED 355
Query: 444 KV 445
K+
Sbjct: 356 KM 357
>gi|91223441|ref|ZP_01258706.1| DNA polymerase IV [Vibrio alginolyticus 12G01]
gi|91191527|gb|EAS77791.1| DNA polymerase IV [Vibrio alginolyticus 12G01]
Length = 356
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 140/367 (38%), Positives = 191/367 (52%), Gaps = 36/367 (9%)
Query: 99 ATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRA 154
A D R +HVDMD FYAAVE NPS +G +AVG +I T NY+AR++GVR+
Sbjct: 2 AMSDRIRKIIHVDMDCFYAAVEMRDNPSYRGIALAVGGHEKQRGVISTCNYDARKYGVRS 61
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A +LCP L+ VP Y S R +F +Y P SLDEAYLD+T+
Sbjct: 62 AMSTARALQLCPHLLVVPGRMHVYKQVSQQIRAIFERYTPIIEPLSLDEAYLDVTDSTAC 121
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 274
RG S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P ++ V
Sbjct: 122 RG-SATLIAESIRRDIWSELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPPEK--VQEV 178
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLG 333
I SLP+ I G+GKV+ L G CE++ L F A + G+
Sbjct: 179 IDSLPLENIPGVGKVSLEKLHQA-GFYRCEDIKNSDYRELLRQFGRQGASLW-QRSHGID 236
Query: 334 STNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSAD--MQKEG 380
+ R RKS+ ERTFS V E+K LY +L + E S D + K+G
Sbjct: 237 NREVVVERERKSVGVERTFSQNIATYDECWQVIEEK--LYPELEKRLERASPDKSIIKQG 294
Query: 381 LRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ 439
+K+K A F++ T + Q + + +L+ +LK + +RL+GL V
Sbjct: 295 -------IKVKFADFQLTTIEHIHPQLELEDFKILLRD---ILKRQNGREIRLLGLNVML 344
Query: 440 FNEDKVR 446
ED+ R
Sbjct: 345 KPEDQAR 351
>gi|339300877|ref|ZP_08650004.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae ATCC
13813]
gi|319745668|gb|EFV97967.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae ATCC
13813]
Length = 369
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/363 (33%), Positives = 200/363 (55%), Gaps = 20/363 (5%)
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMIC 141
+ ++ +L D SR +H+DMDAF+A+VE NPSLKGKP+ +G+ ++
Sbjct: 1 MGERTMLIFPLINDTSRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVS 60
Query: 142 TANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASL 201
T NYEAR+FGV +AM A + CP+ IF+ ++ KY R +F KY S+
Sbjct: 61 TCNYEARKFGVHSAMSSKEAYERCPQAIFISGNYQKYRQVGMEVRDIFKKYTDLVEPMSI 120
Query: 202 DEAYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG 260
DEAYLD+TE + GI S +++A+ ++ ++ + LTCSAG++ N+ LAK+ SD KP G
Sbjct: 121 DEAYLDVTE--NKMGIKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKG 178
Query: 261 -QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 318
+LP+ F+ LPI K G+GK + L G+ T E++L + L +F
Sbjct: 179 LTLILPDQ---AQDFLKPLPIEKFHGVGKRSVEKLH-ALGVYTGEDLLSLSEISLIDMFG 234
Query: 319 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQ 377
D + G+ ++ R RKSI SE+T+ + ++A + ++++ + + A ++
Sbjct: 235 RFGYDLYRK-ARGINASPVKPDRVRKSIGSEKTYGKLLYNEADIKAEISKNVQRVVASLE 293
Query: 378 KEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGL 435
K G+T+ LK++ A FE T+ +TL++Y + I + A + E +RL+G+
Sbjct: 294 KNKKVGKTIVLKVRYADFETLTKRMTLEEYTQDFQIIDQVAKAIFDTLEESVFGIRLLGV 353
Query: 436 RVT 438
VT
Sbjct: 354 TVT 356
>gi|257138591|ref|ZP_05586853.1| DNA polymerase IV [Burkholderia thailandensis E264]
Length = 378
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/356 (37%), Positives = 197/356 (55%), Gaps = 31/356 (8%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPG 158
+R +H D D FYA+VE +PSL+G+P+AVG +I T NYEARRFGV +AM
Sbjct: 7 FARKIIHCDCDCFYASVEMRDDPSLRGRPLAVGGRPDQRGVIATCNYEARRFGVHSAMSS 66
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS 218
+A + CP+L+ +P+ KY S L ++ Y P+ SLDEAYLD++ R G S
Sbjct: 67 ALAMRKCPDLLILPSAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYLDVSRATRCHG-S 125
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISS 277
G IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+G FV+ P++ V F+++
Sbjct: 126 GTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRPHE---VDAFVAA 182
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLGLGS 334
LP+RK+ G+GKVT L D GI TC E L+ SL H F + G+
Sbjct: 183 LPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLHHEFGAFGRRLYELARGIDE 238
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKEGLRG--RTLTLK 389
+ RKS+S E T+ +D A L + AEI +L A +++ G R L +K
Sbjct: 239 RPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALLDARIERAGAARSIRKLYVK 296
Query: 390 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 443
++ A F+ T + ++ + D S+L K A ++RL+G+ V + +ED
Sbjct: 297 IRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQAVRLLGVGV-RIDED 346
>gi|149177333|ref|ZP_01855938.1| DNA-damage-inducible protein P [Planctomyces maris DSM 8797]
gi|148843858|gb|EDL58216.1| DNA-damage-inducible protein P [Planctomyces maris DSM 8797]
Length = 388
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 189/340 (55%), Gaps = 16/340 (4%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFIARKLCPE 167
MDAFYA++E +P L+G+P+ VG + ++ ANY AR+FGV +AMP AR+LCP+
Sbjct: 1 MDAFYASIEERDHPELQGQPIIVGGRAEHRGVVSAANYPARKFGVHSAMPMKTARQLCPQ 60
Query: 168 LIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELR 227
F P + Y S +K+F KY P SLDEA+LD++ G +G EIA ++
Sbjct: 61 AHFFPVRMSDYAEVSQSLQKIFRKYTPLVEPLSLDEAFLDVSGSQLLFG-NGREIAASIK 119
Query: 228 TSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIG 287
V L S GVAPN+ LAK+ SD +KP+G V+ D+ + F+ LP+ ++ GIG
Sbjct: 120 QEVRHSLQLIASVGVAPNKFLAKIASDADKPDGLVVVEPDK--IQEFLDPLPVSRVWGIG 177
Query: 288 KV-TEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKS 345
K+ T+ R GI T ++ + + +L +F + ++ GL R KS
Sbjct: 178 KMATQRFNR--LGIQTISQVRVLEPKILTELFGEQGLHLW-NLSQGLDERAVIPERQAKS 234
Query: 346 ISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL 404
IS E TFS D +L L ++ E +S ++K LRG+T+ LK++ F TR++T+
Sbjct: 235 ISRETTFSSDVNDLEILRIILMDLVEDVSRRLRKNKLRGKTIQLKIRYDDFSTFTRSITV 294
Query: 405 QKYISSSEDILKHASVLLKAEL---PVSLRLIGLRVTQFN 441
+ + +I + A ++L +L P+S+RLIG+ VT F
Sbjct: 295 SQPTDLTREIEQSALLMLDQKLPERPLSIRLIGVGVTGFQ 334
>gi|167581305|ref|ZP_02374179.1| DNA polymerase IV [Burkholderia thailandensis TXDOH]
Length = 378
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/356 (37%), Positives = 197/356 (55%), Gaps = 31/356 (8%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPG 158
+R +H D D FYA+VE +PSL+G+P+AVG +I T NYEARRFGV +AM
Sbjct: 7 FARKIIHCDCDCFYASVEMRDDPSLRGRPLAVGGRPDQRGVIATCNYEARRFGVHSAMSS 66
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS 218
+A + CP+L+ +P+ KY S L ++ Y P+ SLDEAYLD++ R G S
Sbjct: 67 ALAMRKCPDLLILPSAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYLDVSRATRCHG-S 125
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISS 277
G IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+G FV+ P++ V F+++
Sbjct: 126 GTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRPHE---VDAFVAA 182
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLGLGS 334
LP+RK+ G+GKVT L D GI TC E L+ SL H F + G+
Sbjct: 183 LPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLHHEFGAFGRRLYELARGIDE 238
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKEGLRG--RTLTLK 389
+ RKS+S E T+ +D A L + AEI +L A +++ G R L +K
Sbjct: 239 RPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALLDARIERAGAARSIRKLYVK 296
Query: 390 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 443
++ A F+ T + ++ + D S+L K A ++RL+G+ V + +ED
Sbjct: 297 IRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQAVRLLGVGV-RIDED 346
>gi|208779376|ref|ZP_03246722.1| ImpB/MucB/SamB family protein [Francisella novicida FTG]
gi|208745176|gb|EDZ91474.1| ImpB/MucB/SamB family protein [Francisella novicida FTG]
Length = 349
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/284 (41%), Positives = 167/284 (58%), Gaps = 17/284 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE +NPSLK KP AVG + +I T NY AR +GVR+AMP I
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGVRSAMPTAI 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E S
Sbjct: 65 AMQKCPNLILLNTDFAKYKAASTVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEYKNSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+ LP+
Sbjct: 124 LIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPKQ--VDSFVKDLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP 338
+K+ G+GKV++ L+ + TC + LQ+ SL L F + + S G+ +
Sbjct: 182 KKLFGVGKVSQEKLK-TMNVETCLD-LQQLSLATLLDKFGKFGNNLY-SYARGIDNREVN 238
Query: 339 QARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKE 379
R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 239 PVRIRKSVSVENTY--LEDLKTLNACLEKLPSLYDKLTSRMTEE 280
>gi|257879319|ref|ZP_05658972.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
gi|257881865|ref|ZP_05661518.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
gi|257890145|ref|ZP_05669798.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
gi|257893473|ref|ZP_05673126.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
gi|260558761|ref|ZP_05830950.1| DNA directed DNA polymerase [Enterococcus faecium C68]
gi|261207356|ref|ZP_05922043.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
gi|289566863|ref|ZP_06447272.1| DNA polymerase IV [Enterococcus faecium D344SRF]
gi|293559579|ref|ZP_06676113.1| DNA-damage-inducible protein P [Enterococcus faecium E1162]
gi|293567574|ref|ZP_06678918.1| DNA-damage-inducible protein P [Enterococcus faecium E1071]
gi|294615737|ref|ZP_06695587.1| DNA-damage-inducible protein P [Enterococcus faecium E1636]
gi|294617662|ref|ZP_06697289.1| DNA-damage-inducible protein P [Enterococcus faecium E1679]
gi|314937919|ref|ZP_07845235.1| DNA polymerase IV [Enterococcus faecium TX0133a04]
gi|314941410|ref|ZP_07848303.1| DNA polymerase IV [Enterococcus faecium TX0133C]
gi|314948535|ref|ZP_07851915.1| DNA polymerase IV [Enterococcus faecium TX0082]
gi|314951290|ref|ZP_07854344.1| DNA polymerase IV [Enterococcus faecium TX0133A]
gi|314992879|ref|ZP_07858280.1| DNA polymerase IV [Enterococcus faecium TX0133B]
gi|314998083|ref|ZP_07862971.1| DNA polymerase IV [Enterococcus faecium TX0133a01]
gi|383328038|ref|YP_005353922.1| DNA polymerase IV [Enterococcus faecium Aus0004]
gi|389867928|ref|YP_006375351.1| DNA-directed DNA polymerase IV [Enterococcus faecium DO]
gi|415894551|ref|ZP_11550362.1| DNA-damage-inducible protein P [Enterococcus faecium E4453]
gi|416141894|ref|ZP_11599495.1| DNA-damage-inducible protein P [Enterococcus faecium E4452]
gi|424790843|ref|ZP_18217351.1| putative DNA polymerase IV [Enterococcus faecium V689]
gi|424812972|ref|ZP_18238210.1| putative DNA polymerase IV [Enterococcus faecium S447]
gi|424827112|ref|ZP_18251927.1| putative DNA polymerase IV [Enterococcus faecium R501]
gi|424862493|ref|ZP_18286434.1| putative DNA polymerase IV [Enterococcus faecium R499]
gi|424901209|ref|ZP_18324746.1| putative DNA polymerase IV [Enterococcus faecium R497]
gi|424951499|ref|ZP_18366589.1| putative DNA polymerase IV [Enterococcus faecium R496]
gi|424952391|ref|ZP_18367416.1| putative DNA polymerase IV [Enterococcus faecium R494]
gi|424956586|ref|ZP_18371357.1| putative DNA polymerase IV [Enterococcus faecium R446]
gi|424961921|ref|ZP_18376320.1| putative DNA polymerase IV [Enterococcus faecium P1986]
gi|424964118|ref|ZP_18378259.1| putative DNA polymerase IV [Enterococcus faecium P1190]
gi|424968420|ref|ZP_18382044.1| putative DNA polymerase IV [Enterococcus faecium P1140]
gi|424969912|ref|ZP_18383457.1| putative DNA polymerase IV [Enterococcus faecium P1139]
gi|424973275|ref|ZP_18386563.1| putative DNA polymerase IV [Enterococcus faecium P1137]
gi|424978170|ref|ZP_18391116.1| putative DNA polymerase IV [Enterococcus faecium P1123]
gi|424982026|ref|ZP_18394709.1| putative DNA polymerase IV [Enterococcus faecium ERV99]
gi|424984626|ref|ZP_18397153.1| putative DNA polymerase IV [Enterococcus faecium ERV69]
gi|424986313|ref|ZP_18398740.1| putative DNA polymerase IV [Enterococcus faecium ERV38]
gi|424990169|ref|ZP_18402393.1| putative DNA polymerase IV [Enterococcus faecium ERV26]
gi|424994773|ref|ZP_18406698.1| putative DNA polymerase IV [Enterococcus faecium ERV168]
gi|424999062|ref|ZP_18410709.1| putative DNA polymerase IV [Enterococcus faecium ERV165]
gi|425005449|ref|ZP_18416691.1| putative DNA polymerase IV [Enterococcus faecium ERV102]
gi|425007823|ref|ZP_18418938.1| putative DNA polymerase IV [Enterococcus faecium ERV1]
gi|425009707|ref|ZP_18420701.1| putative DNA polymerase IV [Enterococcus faecium E422]
gi|425014480|ref|ZP_18425154.1| putative DNA polymerase IV [Enterococcus faecium E417]
gi|425019387|ref|ZP_18429755.1| putative DNA polymerase IV [Enterococcus faecium C621]
gi|425019621|ref|ZP_18429969.1| putative DNA polymerase IV [Enterococcus faecium C497]
gi|425023820|ref|ZP_18433915.1| putative DNA polymerase IV [Enterococcus faecium C1904]
gi|425031184|ref|ZP_18436327.1| putative DNA polymerase IV [Enterococcus faecium 515]
gi|425036572|ref|ZP_18441314.1| putative DNA polymerase IV [Enterococcus faecium 514]
gi|425039062|ref|ZP_18443629.1| putative DNA polymerase IV [Enterococcus faecium 513]
gi|425043158|ref|ZP_18447421.1| putative DNA polymerase IV [Enterococcus faecium 511]
gi|425045520|ref|ZP_18449619.1| putative DNA polymerase IV [Enterococcus faecium 510]
gi|425048658|ref|ZP_18452549.1| putative DNA polymerase IV [Enterococcus faecium 509]
gi|425051519|ref|ZP_18455183.1| putative DNA polymerase IV [Enterococcus faecium 506]
gi|425061120|ref|ZP_18464385.1| putative DNA polymerase IV [Enterococcus faecium 503]
gi|427395461|ref|ZP_18888383.1| hypothetical protein HMPREF9307_00559 [Enterococcus durans
FB129-CNAB-4]
gi|430831485|ref|ZP_19449536.1| DNA polymerase IV [Enterococcus faecium E0333]
gi|430862315|ref|ZP_19479632.1| DNA polymerase IV [Enterococcus faecium E1573]
gi|430867327|ref|ZP_19482321.1| DNA polymerase IV [Enterococcus faecium E1574]
gi|430963227|ref|ZP_19487519.1| DNA polymerase IV [Enterococcus faecium E1576]
gi|431011146|ref|ZP_19489890.1| DNA polymerase IV [Enterococcus faecium E1578]
gi|431290485|ref|ZP_19506620.1| DNA polymerase IV [Enterococcus faecium E1626]
gi|431747928|ref|ZP_19536692.1| DNA polymerase IV [Enterococcus faecium E2297]
gi|431754045|ref|ZP_19542710.1| DNA polymerase IV [Enterococcus faecium E2883]
gi|431768728|ref|ZP_19557161.1| DNA polymerase IV [Enterococcus faecium E1321]
gi|431770023|ref|ZP_19558426.1| DNA polymerase IV [Enterococcus faecium E1644]
gi|431774449|ref|ZP_19562757.1| DNA polymerase IV [Enterococcus faecium E2369]
gi|431776996|ref|ZP_19565253.1| DNA polymerase IV [Enterococcus faecium E2560]
gi|431781303|ref|ZP_19569451.1| DNA polymerase IV [Enterococcus faecium E6012]
gi|431784934|ref|ZP_19572969.1| DNA polymerase IV [Enterococcus faecium E6045]
gi|257813547|gb|EEV42305.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
gi|257817523|gb|EEV44851.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
gi|257826505|gb|EEV53131.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
gi|257829852|gb|EEV56459.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
gi|260075220|gb|EEW63533.1| DNA directed DNA polymerase [Enterococcus faecium C68]
gi|260078416|gb|EEW66120.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
gi|289161351|gb|EFD09242.1| DNA polymerase IV [Enterococcus faecium D344SRF]
gi|291589675|gb|EFF21479.1| DNA-damage-inducible protein P [Enterococcus faecium E1071]
gi|291591388|gb|EFF23047.1| DNA-damage-inducible protein P [Enterococcus faecium E1636]
gi|291596069|gb|EFF27335.1| DNA-damage-inducible protein P [Enterococcus faecium E1679]
gi|291606455|gb|EFF35855.1| DNA-damage-inducible protein P [Enterococcus faecium E1162]
gi|313587925|gb|EFR66770.1| DNA polymerase IV [Enterococcus faecium TX0133a01]
gi|313592683|gb|EFR71528.1| DNA polymerase IV [Enterococcus faecium TX0133B]
gi|313596507|gb|EFR75352.1| DNA polymerase IV [Enterococcus faecium TX0133A]
gi|313599833|gb|EFR78676.1| DNA polymerase IV [Enterococcus faecium TX0133C]
gi|313642777|gb|EFS07357.1| DNA polymerase IV [Enterococcus faecium TX0133a04]
gi|313645032|gb|EFS09612.1| DNA polymerase IV [Enterococcus faecium TX0082]
gi|364089914|gb|EHM32556.1| DNA-damage-inducible protein P [Enterococcus faecium E4452]
gi|364092131|gb|EHM34531.1| DNA-damage-inducible protein P [Enterococcus faecium E4453]
gi|378937732|gb|AFC62804.1| DNA polymerase IV [Enterococcus faecium Aus0004]
gi|388533177|gb|AFK58369.1| DNA-directed DNA polymerase IV [Enterococcus faecium DO]
gi|402916579|gb|EJX37434.1| putative DNA polymerase IV [Enterococcus faecium S447]
gi|402920398|gb|EJX40916.1| putative DNA polymerase IV [Enterococcus faecium V689]
gi|402923556|gb|EJX43839.1| putative DNA polymerase IV [Enterococcus faecium R501]
gi|402925523|gb|EJX45657.1| putative DNA polymerase IV [Enterococcus faecium R499]
gi|402929819|gb|EJX49540.1| putative DNA polymerase IV [Enterococcus faecium R496]
gi|402931190|gb|EJX50781.1| putative DNA polymerase IV [Enterococcus faecium R497]
gi|402941404|gb|EJX60134.1| putative DNA polymerase IV [Enterococcus faecium R494]
gi|402942144|gb|EJX60773.1| putative DNA polymerase IV [Enterococcus faecium P1986]
gi|402945696|gb|EJX64030.1| putative DNA polymerase IV [Enterococcus faecium R446]
gi|402947532|gb|EJX65740.1| putative DNA polymerase IV [Enterococcus faecium P1190]
gi|402952036|gb|EJX69896.1| putative DNA polymerase IV [Enterococcus faecium P1140]
gi|402958911|gb|EJX76192.1| putative DNA polymerase IV [Enterococcus faecium P1137]
gi|402961782|gb|EJX78777.1| putative DNA polymerase IV [Enterococcus faecium ERV99]
gi|402962996|gb|EJX79896.1| putative DNA polymerase IV [Enterococcus faecium P1123]
gi|402963083|gb|EJX79977.1| putative DNA polymerase IV [Enterococcus faecium P1139]
gi|402968385|gb|EJX84868.1| putative DNA polymerase IV [Enterococcus faecium ERV69]
gi|402976878|gb|EJX92731.1| putative DNA polymerase IV [Enterococcus faecium ERV38]
gi|402979166|gb|EJX94849.1| putative DNA polymerase IV [Enterococcus faecium ERV168]
gi|402980164|gb|EJX95791.1| putative DNA polymerase IV [Enterococcus faecium ERV26]
gi|402980893|gb|EJX96463.1| putative DNA polymerase IV [Enterococcus faecium ERV165]
gi|402985999|gb|EJY01151.1| putative DNA polymerase IV [Enterococcus faecium ERV102]
gi|402994248|gb|EJY08791.1| putative DNA polymerase IV [Enterococcus faecium ERV1]
gi|402998300|gb|EJY12563.1| putative DNA polymerase IV [Enterococcus faecium C621]
gi|402998547|gb|EJY12796.1| putative DNA polymerase IV [Enterococcus faecium E417]
gi|403001961|gb|EJY15974.1| putative DNA polymerase IV [Enterococcus faecium E422]
gi|403008428|gb|EJY21932.1| putative DNA polymerase IV [Enterococcus faecium C1904]
gi|403011172|gb|EJY24501.1| putative DNA polymerase IV [Enterococcus faecium C497]
gi|403014113|gb|EJY27131.1| putative DNA polymerase IV [Enterococcus faecium 514]
gi|403016353|gb|EJY29177.1| putative DNA polymerase IV [Enterococcus faecium 515]
gi|403017456|gb|EJY30199.1| putative DNA polymerase IV [Enterococcus faecium 513]
gi|403020988|gb|EJY33472.1| putative DNA polymerase IV [Enterococcus faecium 511]
gi|403026817|gb|EJY38752.1| putative DNA polymerase IV [Enterococcus faecium 510]
gi|403029973|gb|EJY41693.1| putative DNA polymerase IV [Enterococcus faecium 509]
gi|403037479|gb|EJY48751.1| putative DNA polymerase IV [Enterococcus faecium 506]
gi|403042057|gb|EJY53033.1| putative DNA polymerase IV [Enterococcus faecium 503]
gi|425723961|gb|EKU86847.1| hypothetical protein HMPREF9307_00559 [Enterococcus durans
FB129-CNAB-4]
gi|430481368|gb|ELA58524.1| DNA polymerase IV [Enterococcus faecium E0333]
gi|430548893|gb|ELA88740.1| DNA polymerase IV [Enterococcus faecium E1573]
gi|430550338|gb|ELA90134.1| DNA polymerase IV [Enterococcus faecium E1574]
gi|430555652|gb|ELA95189.1| DNA polymerase IV [Enterococcus faecium E1576]
gi|430560168|gb|ELA99474.1| DNA polymerase IV [Enterococcus faecium E1578]
gi|430582585|gb|ELB21007.1| DNA polymerase IV [Enterococcus faecium E1626]
gi|430614804|gb|ELB51775.1| DNA polymerase IV [Enterococcus faecium E2297]
gi|430619968|gb|ELB56771.1| DNA polymerase IV [Enterococcus faecium E2883]
gi|430628596|gb|ELB65030.1| DNA polymerase IV [Enterococcus faecium E1321]
gi|430634198|gb|ELB70333.1| DNA polymerase IV [Enterococcus faecium E2369]
gi|430635776|gb|ELB71855.1| DNA polymerase IV [Enterococcus faecium E1644]
gi|430639937|gb|ELB75791.1| DNA polymerase IV [Enterococcus faecium E2560]
gi|430648490|gb|ELB83896.1| DNA polymerase IV [Enterococcus faecium E6045]
gi|430649664|gb|ELB85032.1| DNA polymerase IV [Enterococcus faecium E6012]
Length = 373
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 197/363 (54%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 4 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 63
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD
Sbjct: 64 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLD 123
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 124 VTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 179
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 180 APQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGY 235
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 236 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQ 293
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 294 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLT 353
Query: 439 QFN 441
+
Sbjct: 354 NLD 356
>gi|418662812|ref|ZP_13224345.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-122]
gi|375035502|gb|EHS28624.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-122]
Length = 356
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 191/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV + F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSHFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVI--DYQNVHDILMTLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI ++ +K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|384197754|ref|YP_005583498.1| ImpB/MucB/SamB family protein [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|333110717|gb|AEF27733.1| ImpB/MucB/SamB family protein [Bifidobacterium breve
ACS-071-V-Sch8b]
Length = 427
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/358 (33%), Positives = 191/358 (53%), Gaps = 22/358 (6%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGT--MSMICTANYEARRFGVRAAMPGFIARKLC 165
LH+DMDAFYA++E NP LKGKP+ +GT S++ A+YEARR+G+ +AMP A +LC
Sbjct: 27 LHIDMDAFYASLEVARNPGLKGKPVIIGTGPRSVVSAASYEARRYGINSAMPAARAHQLC 86
Query: 166 PELIFVPTDFTKYTYYSD-LTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 224
P+ +F+P D Y S + +VF F S+DE Y+D++ E I
Sbjct: 87 PDGVFLPVDMAYYRMMSHRIIHEVFLTITDQFEQVSVDEGYMDVSGALLEWDKPS-AIGA 145
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 284
+R V E +TCS G+A N+L+AK+ S KPNG ++P R A F+ +P+R I
Sbjct: 146 WIRQQVAERFNVTCSVGIACNKLVAKMASTNAKPNGMLLIPAARSA--QFVQMMPLRGIP 203
Query: 285 GIGKVTEHILRDVFGINTCEEMLQ--KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARF 342
G+G E L + +G+++ E+ Q + +L+ A S + A + GL S R
Sbjct: 204 GVGPSLEKRL-NAWGVHSVAELAQMDEAALIQATGSPAAARGLWAASHGLDSREIATTRE 262
Query: 343 RKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRA 401
KSI SERT + T D ++ R L + ++ ++++GL RTLT+KL+ A +TR+
Sbjct: 263 EKSIGSERTLTEDTRDMHIVCRLLRSACDEVARTLRRKGLVARTLTVKLRFADLSYQTRS 322
Query: 402 VTLQKYISSSEDI----LKHASVLL--------KAELPVSLRLIGLRVTQFNEDKVRA 447
T+++ ++ + ++ ++L LP +RL G+ + +E A
Sbjct: 323 FTMEQPTDTASTLYPECVRQLKIMLGIPANAEPTTPLPKLIRLAGMSTSSLSEAHATA 380
>gi|329962008|ref|ZP_08300019.1| DNA polymerase IV [Bacteroides fluxus YIT 12057]
gi|328530656|gb|EGF57514.1| DNA polymerase IV [Bacteroides fluxus YIT 12057]
Length = 362
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 128/350 (36%), Positives = 188/350 (53%), Gaps = 18/350 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFI 160
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEARRFGVR+AM
Sbjct: 3 GRKIIHIDMDAFYASVEQRDNPGLRGKPIAVGHAEERGVVAAASYEARRFGVRSAMSSQK 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 219
A++LCP+LIF+P Y S ++F +Y SLDEA+LD+TE + GIS
Sbjct: 63 AKRLCPQLIFIPGRMEAYKSVSRQIHEIFHEYTDIVEPLSLDEAFLDVTE--NKPGISLA 120
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
++IA+EL+ + E L SAGV+ N+ LAK+ SD KP+G + D+ + FI+ LP
Sbjct: 121 VDIAKELKQKIKERLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPDQ--ALEFIARLP 178
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTP 338
I G+G VT + + GI+ E++ + +L F A + G+
Sbjct: 179 IESFWGVGPVTAKKMH-LLGIHNGEQLRARSLDMLIREFGKVGAAYH-DFARGIDLRPVE 236
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKSI E T ++ + +L +A L ++ + RG TLTLK+K F
Sbjct: 237 AVRIRKSIGCEHTLERDINRRSSVIIELYHVAVELVGRLEHKNFRGNTLTLKIKFHDFNQ 296
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVTQFNED 443
TR++T + + S + IL A LL + P+ RLIGL V+ E+
Sbjct: 297 ITRSITQSRELISLDVILPLAKQLLNEVDYEQHPI--RLIGLSVSNPREE 344
>gi|334365065|ref|ZP_08514033.1| DNA polymerase IV [Alistipes sp. HGB5]
gi|313158762|gb|EFR58149.1| DNA polymerase IV [Alistipes sp. HGB5]
Length = 358
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 191/340 (56%), Gaps = 16/340 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P +G+P+AVG ++ TA+YEAR +GVR+A+ +A
Sbjct: 4 RKIIHIDMDAFYASVEQRDRPEYRGQPIAVGHDGPRGVVATASYEARPYGVRSAISSALA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP LIFVP F Y S R VF Y SLDEA+LD+T + S
Sbjct: 64 KRLCPNLIFVPARFDVYKEVSRQIRAVFRDYTELVEPLSLDEAFLDVTHLR-----SATL 118
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
A E++ + E GLT SAG++ N++LAK+ SD KP+G F +P + + F+++LPI
Sbjct: 119 AAREIKARILAETGLTASAGISVNKMLAKIASDYRKPDGLFTIPPGQ--IEEFVAALPIE 176
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+ GIG+VT + + GI+T ++ L+ + L F + ++ G+
Sbjct: 177 RFFGIGEVTARKMHGM-GIHTGADLRLRDEAELVRHFGKAGHSYY-GYARGIDEREVTPN 234
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TF+ T+D+ L +L+ + E + + + +G+T+ LKLK +F T
Sbjct: 235 RIRKSLGAETTFAEDTDDREQLRLELSAVREEVWNRLMRHEFKGKTVVLKLKFDNFRQIT 294
Query: 400 RAVTLQKYISSSEDILKHASVLLKAE--LPVSLRLIGLRV 437
R+ TL ++S+E + + + LL A +RLIGL V
Sbjct: 295 RSKTLFAPVNSAETLRQVSEELLAAVDFRGRKIRLIGLTV 334
>gi|414084223|ref|YP_006992931.1| impB/mucB/samB family protein [Carnobacterium maltaromaticum LMA28]
gi|412997807|emb|CCO11616.1| impB/mucB/samB family protein [Carnobacterium maltaromaticum LMA28]
Length = 376
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/359 (34%), Positives = 193/359 (53%), Gaps = 24/359 (6%)
Query: 98 EATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEARRF 150
E RD SR +HVDMDAFYA+VE NP LKGKP+ + G ++ TANYEAR+F
Sbjct: 9 EPVRDTSRKIIHVDMDAFYASVEERENPDLKGKPLVIARHPKDNGGRGVVTTANYEARKF 68
Query: 151 GVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE 210
G+ +AM A +LCP IFVP Y+ S R++F Y SLDEAYLD+TE
Sbjct: 69 GIHSAMSAQKAYELCPHAIFVPGRHELYSEISAEIREIFKHYTDLIEPLSLDEAYLDVTE 128
Query: 211 VCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMA 270
++ S +IA ++ ++E LTCSAGV+ N+ +AK+ SD KP G V+P ++
Sbjct: 129 -NKKNLKSATQIAYLIQKEIWETLHLTCSAGVSYNKFIAKLASDYKKPAGITVIPPEK-- 185
Query: 271 VMTFISSLPIRKIGGIGKVTEHIL--RDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLS 327
+ F+ +L I K G+GK T + R++F ++ + L L +F +
Sbjct: 186 ALDFLKALEIGKFYGVGKKTAEKMYERNIF---NGADLYKLSELELIHLFGKMGYSLYRK 242
Query: 328 VGLGLGSTNTPQARFRKSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGR 384
V G+ ++ +R RKS+ E T+ TE++ L +L +A + + + + G+
Sbjct: 243 V-RGIDNSAVQPSRERKSVGREHTYGTPLTTEEEVL--SELRFLAGKVHSSLTRNQKHGK 299
Query: 385 TLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFN 441
+ LKL+ +E T+ ++L Y+ SE+I HA L + L +RL+G+ +T +
Sbjct: 300 IVVLKLRNTDYETMTKRISLPAYVKVSEEIFFHARNLWEEVGSLDKGIRLVGITITGLD 358
>gi|325578163|ref|ZP_08148298.1| DNA-directed DNA polymerase IV [Haemophilus parainfluenzae ATCC
33392]
gi|325159899|gb|EGC72028.1| DNA-directed DNA polymerase IV [Haemophilus parainfluenzae ATCC
33392]
Length = 344
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/342 (39%), Positives = 191/342 (55%), Gaps = 26/342 (7%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFIARKLCPE 167
MD FYA+VE NP+L+GKP+AVG S ++ T NYEAR+FG+ +AMP A K CP
Sbjct: 1 MDCFYASVEIRENPTLQGKPVAVGGSSRQRGVLTTCNYEARKFGLHSAMPTAQAIKKCPN 60
Query: 168 LIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELR 227
LI VP + Y S ++F +Y SLDEAYLD+T+ C + S IA+E+R
Sbjct: 61 LILVPVNMPLYKQVSAQIHQIFQRYTSIIEPLSLDEAYLDVTD-CTQCSGSATWIAQEIR 119
Query: 228 TSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPIRKIGGI 286
++++E LT SAGVAP + LAK+ SD+NKPNGQFV+ P++ V F+ +LP++KI G+
Sbjct: 120 QAIFDELKLTASAGVAPLKFLAKIASDMNKPNGQFVIQPHE---VEQFVKTLPLKKIPGV 176
Query: 287 GKVT-EHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR 343
GKVT E +L+ G+ TCE++ QK S+L +F + G+ R R
Sbjct: 177 GKVTSERLLK--MGLETCEDV-QKLDQSILLNIFGKMGKRIW-DFSHGIDDREIQAYRER 232
Query: 344 KSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQKEGLRG-RTLTLKLKTASFEV 397
KSI ERT S + + ALL AE+ + L R + +KLK F+V
Sbjct: 233 KSIGVERTLSKNIRHLEQGIALLDNLYAELIRRIERSAPNVPLTVFRKIGVKLKFEDFQV 292
Query: 398 RTRAVT-LQKYISSSEDILKHASVLLKAELPVSLRLIGLRVT 438
T T L + S + +L+ + + S+RL+GL VT
Sbjct: 293 TTLEKTGLPLSLKSFQQLLEQ---IWQRSQGKSIRLVGLHVT 331
>gi|404254296|ref|ZP_10958264.1| DNA-directed DNA polymerase [Sphingomonas sp. PAMC 26621]
Length = 364
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/344 (35%), Positives = 194/344 (56%), Gaps = 12/344 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE +P+L+GKP+AVG ++ A+YEAR FGVR+A+P A
Sbjct: 11 RKIIHVDMDAFFASVEQRDDPALRGKPIAVGHAAARGVVAAASYEARVFGVRSALPSVTA 70
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ CP+L+FVP F Y S + +F Y P SLDEAYLD+T ++ +
Sbjct: 71 LRRCPDLVFVPPRFDVYKAVSRQIQAIFRDYTPLVQPLSLDEAYLDVTANLQDLP-TAWA 129
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
A+ +R + EE GLT SAG++ N+ LAK+ SD KPNGQF + D A ++ +LP+
Sbjct: 130 TAKAIRARILEETGLTASAGISYNKFLAKLASDQRKPNGQFAVTPDMGAA--WVETLPVS 187
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+ G+G VT + + GI T ++ K L A F ++ AD++ ++ G
Sbjct: 188 RFHGVGPVTAKKMHRL-GITTGADLRAKSIDFLRANFGNA-ADWYHAIARGEDHRPVDPD 245
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS SE TF+ D + + ++A+ + A K GRT+T+K+K F+ T
Sbjct: 246 RIRKSSGSETTFNRDLLDPVEIATGVQQMADDVWAWCAKAEAYGRTVTVKVKYNDFQQIT 305
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 441
R+ T I ++ + ++ L+++ LP + +RL+G+ V+ F+
Sbjct: 306 RSRTYPGPIDTAAKLSAASAELIRSVLPPTKGIRLVGVTVSTFD 349
>gi|313205495|ref|YP_004044152.1| DNA-directed DNA polymerase [Paludibacter propionicigenes WB4]
gi|312444811|gb|ADQ81167.1| DNA-directed DNA polymerase [Paludibacter propionicigenes WB4]
Length = 361
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 189/349 (54%), Gaps = 16/349 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A++E N +GKP+AVG ++ ++YEARR+GV +AM A
Sbjct: 2 RKIIHIDMDAFFASIEQRDNADYRGKPLAVGYSGARGVVAASSYEARRYGVHSAMASKTA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ CP LIFV F Y S ++F +Y SLDEA+LD+TE ++ + +
Sbjct: 62 LRKCPHLIFVMPRFDVYKSVSRQIMEIFHEYTDLVEPLSLDEAFLDVTENHKQIA-TATQ 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+E++ + E GLT SAGV+ N+ LAK+ SD NKP+G FV+ A F+ +LPI
Sbjct: 121 IAKEIKQKIRETVGLTASAGVSFNKFLAKIASDYNKPDGLFVITPK--AAEQFVDTLPIE 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
+ G+GKVT + + GI T ++ Q + + + R
Sbjct: 179 RFFGVGKVTAERMHQL-GIKTGADLKQWSEQGLVTNFGKVGHMYYQNARAIDNRPVESQR 237
Query: 342 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSAD----MQKEGLRGRTLTLKLKTASFEV 397
RKS+SSE TF++ D +Y ++ ++L+ + +QK+ +GRT ++KLK + F V
Sbjct: 238 IRKSVSSETTFAIDTD---IYEEILPELDVLTREVVDYIQKKDFKGRTASIKLKFSDFRV 294
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRVTQFNEDKV 445
TR+ T +S E + +LK +L +RLIG+ V NE++V
Sbjct: 295 ITRSKTFPTPVSDYETLYGAGKEMLKLVDLSPKIRLIGIGVKN-NEEEV 342
>gi|385782159|ref|YP_005758330.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|418572807|ref|ZP_13137011.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21333]
gi|364523148|gb|AEW65898.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|371983970|gb|EHP01102.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21333]
Length = 356
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 191/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFLAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDILMTLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI ++ +K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHD-NGIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|431183686|ref|ZP_19499994.1| DNA polymerase IV [Enterococcus faecium E1620]
gi|430573272|gb|ELB12096.1| DNA polymerase IV [Enterococcus faecium E1620]
Length = 376
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 197/363 (54%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 4 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 63
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD
Sbjct: 64 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLD 123
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 124 VTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 179
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 180 APQD---AVPFLKALPIEKFHGVGKRTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGY 235
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 236 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQ 293
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 294 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLT 353
Query: 439 QFN 441
+
Sbjct: 354 NLD 356
>gi|358052928|ref|ZP_09146734.1| DNA polymerase IV [Staphylococcus simiae CCM 7213]
gi|357257587|gb|EHJ07838.1| DNA polymerase IV [Staphylococcus simiae CCM 7213]
Length = 356
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 194/365 (53%), Gaps = 21/365 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASNRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP +V F +Y S +F Y SLDEAYLDIT++ R +
Sbjct: 64 AHKLCPNGYYVTHRFGEYRKISQQIMAIFRSYTDKVEPMSLDEAYLDITDLVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKPNG V+ D V I SL I
Sbjct: 123 QIAQYIRRDILEQTALTASAGVSYNKFLAKLASGMNKPNGMTVI--DYNNVHDIIMSLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D I T +++ QK L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHD-NDIYTGQDLYQKSEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKSI +ERTF+ V +D+ +L RK+ E++ + + + +T+T+K+KT FE
Sbjct: 239 SRIRKSIGTERTFATDVNDDEQIL-RKVWELSGKTAERLNELQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNEDKVRAPSDPTQKT 455
++ +L+ +++ DI A L + + +RLIG+ V PS T
Sbjct: 298 YSKQTSLRDSVNTENDIYNIAYALYNELKDPDIPIRLIGVTVGNLE------PSSYKNMT 351
Query: 456 LTNFM 460
+ +F+
Sbjct: 352 IYDFI 356
>gi|451970837|ref|ZP_21924061.1| DNA polymerase IV [Vibrio alginolyticus E0666]
gi|451933254|gb|EMD80924.1| DNA polymerase IV [Vibrio alginolyticus E0666]
Length = 356
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 140/367 (38%), Positives = 191/367 (52%), Gaps = 36/367 (9%)
Query: 99 ATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRA 154
A D R +HVDMD FYAAVE NPS +G +AVG +I T NY+AR++GVR+
Sbjct: 2 AMSDRIRKIIHVDMDCFYAAVEMRDNPSYRGIALAVGGHEKQRGVISTCNYDARKYGVRS 61
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A +LCP L+ VP Y S R +F +Y P SLDEAYLD+T+
Sbjct: 62 AMSTARALQLCPHLLVVPGRMHVYKQVSQQIRAIFERYTPIIEPLSLDEAYLDVTDSTAC 121
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTF 274
RG S IAE +R ++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P ++ V
Sbjct: 122 RG-SATLIAESIRRDIWSELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPPEK--VQEV 178
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLG 333
I SLP+ I G+GKV+ L G CE++ L F A + G+
Sbjct: 179 IDSLPLENIPGVGKVSLEKLHQA-GFYRCEDIKNSDYRELLRQFGRQGASLW-QRSHGID 236
Query: 334 STNTPQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSAD--MQKEG 380
+ R RKS+ ERTFS V E+K LY +L + E S D + K+G
Sbjct: 237 NREVVVERERKSVGVERTFSQNIATYGECWQVIEEK--LYPELEKRLERASPDKSIIKQG 294
Query: 381 LRGRTLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ 439
+K+K A F++ T + Q + + +L+ +LK + +RL+GL V
Sbjct: 295 -------IKVKFADFQLTTIEHIHPQLELEDFKILLRD---ILKRQNGREIRLLGLNVML 344
Query: 440 FNEDKVR 446
ED+ R
Sbjct: 345 KPEDQAR 351
>gi|167619388|ref|ZP_02388019.1| DNA polymerase IV [Burkholderia thailandensis Bt4]
Length = 378
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 134/356 (37%), Positives = 197/356 (55%), Gaps = 31/356 (8%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPG 158
+R +H D D FYA+VE +PSL+G+P+AVG +I T NYEARRFGV +AM
Sbjct: 7 FARKIIHCDCDCFYASVEMRDDPSLRGRPLAVGGRPDQRGVIATCNYEARRFGVHSAMSS 66
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS 218
+A + CP+L+ +P+ KY S L ++ Y P+ SLDEAYLD++ R G S
Sbjct: 67 ALAMRKCPDLLILPSAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYLDVSRATRCHG-S 125
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISS 277
G IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+G FV+ P++ V F+++
Sbjct: 126 GTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRPHE---VDAFVAA 182
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLGLGS 334
LP+RK+ G+GKVT L D GI TC E L+ SL H F + G+
Sbjct: 183 LPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLHHEFGAFGRRLYELARGIDE 238
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKEGLRG--RTLTLK 389
+ RKS+S E T+ +D A L + AEI +L A +++ G R L +K
Sbjct: 239 RPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALLDARIERAGAARSIRKLYVK 296
Query: 390 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 443
++ A F+ T + ++ + D S+L K A ++RL+G+ V + +ED
Sbjct: 297 VRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQAVRLLGVGV-RIDED 346
>gi|77412153|ref|ZP_00788476.1| DNA-damage-inducible protein P [Streptococcus agalactiae CJB111]
gi|77161813|gb|EAO72801.1| DNA-damage-inducible protein P [Streptococcus agalactiae CJB111]
Length = 364
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 195/350 (55%), Gaps = 20/350 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+A+VE NPSLKGKP+ +G+ ++ T NYEAR+FGV +
Sbjct: 9 DTSRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY R +F KY S+DEAYLD+TE +
Sbjct: 69 AMSSKEAYERCPQAIFISGNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVTE--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S +++A+ ++ ++ + LTCSAG++ N+ LAK+ SD KP G +LP+
Sbjct: 127 MGIKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQ---AQ 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLG 331
F+ LPI K G+GK + L GI T E++L + L +F D + G
Sbjct: 184 DFLKPLPIEKFHGVGKRSVEKLH-ALGIYTGEDLLSLSEISLIDMFGRFGYDLYRK-ARG 241
Query: 332 LGSTNTPQARFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 390
+ ++ R RKSI SE+T+ + ++A + ++++ + + A ++K G+T+ LK+
Sbjct: 242 INASPVKPDRVRKSIGSEKTYGKLLYNEADIKAEISKNVQRVVASLEKNKKVGKTIVLKV 301
Query: 391 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVT 438
+ A FE T+ +TL++Y + I + A + E +RL+G+ VT
Sbjct: 302 RYADFETLTKRMTLEEYTQDFQIIDQVAKAIFDTLEESVFGIRLLGVTVT 351
>gi|312868224|ref|ZP_07728424.1| putative DNA polymerase IV [Streptococcus parasanguinis F0405]
gi|311095969|gb|EFQ54213.1| putative DNA polymerase IV [Streptococcus parasanguinis F0405]
Length = 368
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/362 (35%), Positives = 194/362 (53%), Gaps = 40/362 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NPSLKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPSLKGKPVVIGQDPRQSGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A LCP+ IF+ ++ KY + R++F +Y S+DEAYLD+TE +
Sbjct: 69 AMSSKEALDLCPQAIFISGNYEKYREVGEQVREIFKRYTDLIEPMSIDEAYLDVTE-NKI 127
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 273
+ S ++IA ++ +++EE LT SAGV+ N+ LAK+ SD KP G VLP D
Sbjct: 128 QSKSAVKIARLIQHAIWEELHLTASAGVSYNKFLAKMASDYQKPRGLTVVLPED---AED 184
Query: 274 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL- 332
F+S + I K G+GK T L ++ G+ T G+ L A+ + D F G L
Sbjct: 185 FLSQMDIAKFHGVGKKTVERLHEM-GVYT-------GADLLAIPEMTLIDRFGRFGYDLF 236
Query: 333 ----GSTNTP--QARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQKEG 380
G N+P R RKSI ERT+ + LLY ++ ++ ++ ++K G
Sbjct: 237 RKARGIHNSPVKSHRIRKSIGKERTY-----RKLLYAEDDIVEEIVNLSSKVAQSLEKHG 291
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVT 438
+G+TL LK++ F T+ VTL + +E I + A + + +RL+G+ +T
Sbjct: 292 KQGKTLVLKVRFGDFTTLTKRVTLTEPTRDAERINRSARHIFQEIESTNTGIRLLGVTMT 351
Query: 439 QF 440
F
Sbjct: 352 NF 353
>gi|430821683|ref|ZP_19440274.1| DNA polymerase IV [Enterococcus faecium E0045]
gi|430829563|ref|ZP_19447655.1| DNA polymerase IV [Enterococcus faecium E0269]
gi|430869936|ref|ZP_19483091.1| DNA polymerase IV [Enterococcus faecium E1575]
gi|431766003|ref|ZP_19554501.1| DNA polymerase IV [Enterococcus faecium E4215]
gi|430438165|gb|ELA48638.1| DNA polymerase IV [Enterococcus faecium E0045]
gi|430480316|gb|ELA57492.1| DNA polymerase IV [Enterococcus faecium E0269]
gi|430559313|gb|ELA98672.1| DNA polymerase IV [Enterococcus faecium E1575]
gi|430627336|gb|ELB63845.1| DNA polymerase IV [Enterococcus faecium E4215]
Length = 372
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 197/363 (54%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 3 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 62
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD
Sbjct: 63 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLD 122
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 123 VTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 178
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 179 APQD---AVPFLKALPIEKFHGVGKRTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGY 234
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 235 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQ 292
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 293 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLT 352
Query: 439 QFN 441
+
Sbjct: 353 NLD 355
>gi|423081977|ref|ZP_17070572.1| putative DNA polymerase IV [Clostridium difficile 002-P50-2011]
gi|423085581|ref|ZP_17074023.1| putative DNA polymerase IV [Clostridium difficile 050-P50-2011]
gi|357549227|gb|EHJ31074.1| putative DNA polymerase IV [Clostridium difficile 002-P50-2011]
gi|357549498|gb|EHJ31344.1| putative DNA polymerase IV [Clostridium difficile 050-P50-2011]
Length = 366
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/357 (34%), Positives = 194/357 (54%), Gaps = 26/357 (7%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPG 158
L R +H+DMDAFYA++E N LKG+P+ VG + ++ T +YEAR+FG+ +AMP
Sbjct: 4 LHRKIIHIDMDAFYASIEQRDNKKLKGRPVIVGGNPQSRGVVATCSYEARKFGIHSAMPS 63
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI- 217
+A CP +FV F Y S+ R +F +Y SLDEAYLD+T+ ++ I
Sbjct: 64 AVAYNRCPYAVFVRPRFDVYKSVSEQIRDIFYRYTDLVEPLSLDEAYLDVTK--NKKSID 121
Query: 218 SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
S IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KPNG V+ + F+
Sbjct: 122 SSIEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEEN--AQDFLDK 179
Query: 278 LPIRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
LP+ K G+GKVT + L+++ GI T C + + L +F + + G+
Sbjct: 180 LPVNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----LENIFKKRGYELY-KFARGI 233
Query: 333 GSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 390
R RKS+ +E T S + D+ L E+ E + ++ G+TLTLK+
Sbjct: 234 DDRPVEPNRVRKSVGAETTLSHNLDIDEEETRNILDELCEEVCHRLKSSEKFGKTLTLKI 293
Query: 391 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRVTQFNEDK 444
K F TR+++L+ YI DI LL+ + V+ +RL+G+ ++ ++ K
Sbjct: 294 KYEDFTKITRSISLEHYIDEYNDIRSGVDNLLR-NVEVNGKQIRLLGVTISNLSDKK 349
>gi|431745421|ref|ZP_19534267.1| DNA polymerase IV [Enterococcus faecium E2134]
gi|430610468|gb|ELB47613.1| DNA polymerase IV [Enterococcus faecium E2134]
Length = 373
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 197/363 (54%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 4 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 63
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD
Sbjct: 64 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLD 123
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 124 VTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 179
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 180 APQD---AVPFLKALPIEKFHGVGKRTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGY 235
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 236 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQ 293
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 294 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLT 353
Query: 439 QFN 441
+
Sbjct: 354 NLD 356
>gi|425056854|ref|ZP_18460293.1| putative DNA polymerase IV [Enterococcus faecium 504]
gi|403041417|gb|EJY52432.1| putative DNA polymerase IV [Enterococcus faecium 504]
Length = 373
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 198/363 (54%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 4 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 63
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD
Sbjct: 64 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLD 123
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ +++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 124 VTENKINCK----SAIKIARMIQANIWESDQLTCSAGVSYNKFLAKLASDYQKPRGITVV 179
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 180 APQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGY 235
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 236 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQ 293
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 294 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLT 353
Query: 439 QFN 441
+
Sbjct: 354 NLD 356
>gi|16804014|ref|NP_465499.1| DNA polymerase IV [Listeria monocytogenes EGD-e]
gi|386050951|ref|YP_005968942.1| DNA polymerase IV [Listeria monocytogenes FSL R2-561]
gi|404284471|ref|YP_006685368.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2372]
gi|405759025|ref|YP_006688301.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2479]
gi|22095619|sp|Q8Y5T0.1|DPO4_LISMO RecName: Full=DNA polymerase IV; Short=Pol IV
gi|16411428|emb|CAD00053.1| lmo1975 [Listeria monocytogenes EGD-e]
gi|346424797|gb|AEO26322.1| DNA polymerase IV [Listeria monocytogenes FSL R2-561]
gi|404233973|emb|CBY55376.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2372]
gi|404236907|emb|CBY58309.1| DNA-damage-inducible DNA polymerase IV [Listeria monocytogenes
SLCC2479]
Length = 356
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 192/351 (54%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYHLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDASQIYQAAALLLIESYTGQDSIRLIGLTVTNL 343
>gi|306832183|ref|ZP_07465337.1| DNA-directed DNA polymerase IV [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|386338579|ref|YP_006034748.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
gi|304425622|gb|EFM28740.1| DNA-directed DNA polymerase IV [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|334281215|dbj|BAK28789.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
Length = 381
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/371 (33%), Positives = 201/371 (54%), Gaps = 30/371 (8%)
Query: 91 DKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTA 143
D+ +L D+SR +H+DMDAF+A+VE NP LKGKP+ +G+ ++ T
Sbjct: 14 DRLMLIFPLINDISRKIIHIDMDAFFASVEERDNPDLKGKPVIIGSDPRKTGGRGVVSTC 73
Query: 144 NYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDE 203
NYEAR+FGV +AM A + CP+ +F+ ++ KY R++F +Y S+DE
Sbjct: 74 NYEARKFGVHSAMSSKEAYERCPQAVFISGNYQKYRKVGMQIREIFKRYTDLVEPMSIDE 133
Query: 204 AYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-Q 261
AYLD+TE + GI S I+IA+ ++ +++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 134 AYLDVTE--NKLGIKSAIKIAKMIQYDIWKEVHLTCSAGVSYNKFLAKLASDFEKPKGLT 191
Query: 262 FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHS 320
+LP D F+ LPI K G+GK + L + G+ T ++L+ + L +F
Sbjct: 192 LILPED---AQDFLKKLPIEKFYGVGKRSVEKLHQL-GVFTGADLLEIPEMTLIDLFGRF 247
Query: 321 TADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR------KLAEIAEMLSA 374
D + G+ ++ R RKSI SERT+ LLY ++++ A+ +
Sbjct: 248 GYDLYRK-ARGISNSPVKSNRIRKSIGSERTYG-----KLLYEEDDVKSEISKNAQRVVD 301
Query: 375 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRL 432
+Q+ GRT+ LK++ + F T+ +TL + E I + A + + E + +RL
Sbjct: 302 TLQRNHKVGRTIVLKVRYSDFSTLTKRITLDDVTNDFEVIDQVAKTIYDSLDESKLGVRL 361
Query: 433 IGLRVTQFNED 443
+G+ VT ++
Sbjct: 362 LGVTVTGLEDN 372
>gi|345882594|ref|ZP_08834057.1| DNA polymerase IV [Prevotella sp. C561]
gi|345044625|gb|EGW48656.1| DNA polymerase IV [Prevotella sp. C561]
Length = 358
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 130/346 (37%), Positives = 197/346 (56%), Gaps = 36/346 (10%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAF+A+VE NP L+G+P+AVG ++ TA+YEAR +GV +AM A++ CP+L
Sbjct: 1 MDAFFASVEQRDNPELRGRPIAVGFDGPRGVVSTASYEARPYGVHSAMSMAQAKRRCPQL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GIEIAEELR 227
I VPT F KY S VF +Y SLDEA+LD+T+ ++GI ++IA+E++
Sbjct: 61 IVVPTHFEKYKEVSQQIHAVFHEYTDLVEPISLDEAFLDVTD--NKKGIELAVDIAKEIK 118
Query: 228 TSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIG 287
+ E LT SAG++ N+LLAK+ SD+ KPNG F + DR + FI SLP+ K+ G+G
Sbjct: 119 QKILERTSLTASAGISFNKLLAKIASDMRKPNGIFTVHPDR--ALDFIGSLPVEKLWGVG 176
Query: 288 KVTEHILRDVFGINT--------CEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
T + + ++ G+ T CE ++Q + V+ DF G+ +
Sbjct: 177 PKTANRMHEM-GVFTGAQLRRISCEHLVQVFGKMGRVYY----DF----SRGIDNRPVVV 227
Query: 340 ARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LSADMQKEGLRGRTLTLKLKTASFE 396
A RKS+ ERTF ED + + + E+ + L ++++ RGRTLTLKLK +
Sbjct: 228 AYERKSVGCERTF--LEDLHIDTKIIIELYHIVLELVERIERKDFRGRTLTLKLKWDATT 285
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVT 438
TR++T +K + + +DIL A LLK + P+ RL+GL V+
Sbjct: 286 QITRSLTQEKVLRTKDDILPLAKRLLKDTEYHDRPI--RLMGLSVS 329
>gi|298384083|ref|ZP_06993644.1| ATP-NAD kinase [Bacteroides sp. 1_1_14]
gi|298263687|gb|EFI06550.1| ATP-NAD kinase [Bacteroides sp. 1_1_14]
Length = 363
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 130/353 (36%), Positives = 198/353 (56%), Gaps = 22/353 (6%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGF 159
R +H+DMDAFYA+VE +P L+GKP+AVG ++ A+YEARR+GVR+AM
Sbjct: 2 FQRKIIHIDMDAFYASVEQRDHPELRGKPLAVGHAEERGVVAAASYEARRYGVRSAMSSQ 61
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS- 218
A++LCP+LIFV Y S ++F +Y SLDEA+LD+TE ++GIS
Sbjct: 62 KAKRLCPQLIFVSGRMDVYKSVSRQIHEIFHEYTDIIEPLSLDEAFLDVTE--NKKGISL 119
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
++IA+E++ + E+ L SAGV+ N+ LAK+ SD KP+G + D+ + FI+ L
Sbjct: 120 AVDIAKEIKLRIREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPDQ--ALDFIAGL 177
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTN 336
PI G+G VT + + GI+ + L+K SL L A F A ++ G+
Sbjct: 178 PIESFWGVGPVTAKKMH-LLGIHNGLQ-LRKCSLEMLTAHFGKVGALYY-ECSRGIDERP 234
Query: 337 TPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
R RKSI ERT ++ +++ +L +A L +Q++ +G TLTLK+K
Sbjct: 235 VEAVRIRKSIGCERTLERDISVHSSVII-ELYHVAVELIERLQRKEFKGNTLTLKIKFHD 293
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKA----ELPVSLRLIGLRVTQFNED 443
F TR++T + + + + IL A LLK+ + P+ RLIGL V+ E+
Sbjct: 294 FSQITRSITQSQELYTLDRILPLAKELLKSVEYEQHPI--RLIGLSVSNPKEE 344
>gi|408402364|ref|YP_006860328.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|407968593|dbj|BAM61831.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
RE378]
Length = 365
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 200/362 (55%), Gaps = 31/362 (8%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPVLKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY R +F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPQAIFISGNYEKYRSVGQEIRHIFKRYTDLVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ ++ E LTCSAGV+ N+ LAK+ SD KP+G VLP D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQD---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLG 331
+F++ LPI K G+GK + L ++ GI T +++L+ + L F D + G
Sbjct: 184 SFLADLPIEKFHGVGKKSVEKLHEM-GIYTGQDLLEVPEMTLIDHFGRFGFDLYRK-ARG 241
Query: 332 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 385
+ + R RKSI SERT++ LLY++ AEI A ++A +Q G+T
Sbjct: 242 ISHSPVKPNRIRKSIGSERTYA-----KLLYQEADIKAEISKNARRVAALLQDHKKLGKT 296
Query: 386 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFNED 443
+ LK++ A F T+ VTL + + I + A + E V +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRDAARIEQVAESIFDTLPEHTVGIRLLGVTMTNL-ED 355
Query: 444 KV 445
K+
Sbjct: 356 KM 357
>gi|315660146|ref|ZP_07913003.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
gi|315494827|gb|EFU83165.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
Length = 359
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 191/343 (55%), Gaps = 17/343 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP L+GKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIVHIDMDFFFAQVEMRDNPKLRGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP+ +V + KY S+ +F Y SLDEAYLDIT + R +S
Sbjct: 64 AHKLCPDGYYVQGQYEKYRTISNEIMSIFRSYTEAVEPMSLDEAYLDITHLVRP-DLSAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPNG V+ D V + +L I
Sbjct: 123 QIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVI--DYENVHKILMALDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK +E I+ GI +++ QK L +F + + G+ +
Sbjct: 181 GDFPGVGKASEKIMHK-HGIYNGQDLYQKDVFELVRLFGKRGRGLY-NKARGIDDSPVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ V +D +L +K+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRIRKSVGTERTFATDVNDDDEIL-QKMWELSGKTAERLNKLQKSAKTVTVKIKTFKFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLIGLRV 437
++ ++L+ I S DI + + +L AEL +RLIG+ V
Sbjct: 298 LSKQMSLRDPIRSETDIY-NIAYMLYAELKDPETPIRLIGVTV 339
>gi|421656075|ref|ZP_16096386.1| ImpB/MucB/SamB family protein [Acinetobacter baumannii Naval-72]
gi|408506381|gb|EKK08092.1| ImpB/MucB/SamB family protein [Acinetobacter baumannii Naval-72]
Length = 351
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 192/346 (55%), Gaps = 16/346 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LK P+ + + ++I A+Y AR+FG+R+AM A
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLKHLPVVISSHHPRAVIAAASYPARKFGLRSAMSMSQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S E
Sbjct: 62 RKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVTENLKQIA-SATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+ ++A +FI LP++
Sbjct: 121 VAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVA--SFIQDLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGL-GLGSTNTP-Q 339
KI G+GKVT+ L+ + ++T + LQK + AV H + + L G N P Q
Sbjct: 179 KIPGVGKVTQEKLQQL-ELHTLGD-LQK--IEEAVLVHHFGKYGQQLYLYAQGIDNRPVQ 234
Query: 340 A-RFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
A R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 235 AERARQQISKETTFDSDFTLAQCQPYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQTL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 441
+ + + I S +D+++ +LL + +P RLIG+ V Q
Sbjct: 295 QHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGIGVYQLQ 340
>gi|293572065|ref|ZP_06683076.1| DNA polymerase IV [Enterococcus faecium E980]
gi|291607850|gb|EFF37161.1| DNA polymerase IV [Enterococcus faecium E980]
Length = 372
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/368 (34%), Positives = 195/368 (52%), Gaps = 36/368 (9%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 3 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 62
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF Y S+DEAYLD
Sbjct: 63 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYLD 122
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 123 VTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 178
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQKGSLLCAVF 317
P D + F+ +LPI K G+GK T + ++ GI T C EM+ L F
Sbjct: 179 APQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM-----LIRNF 229
Query: 318 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSAD 375
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE +
Sbjct: 230 GKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEA 287
Query: 376 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLI 433
+++ G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+
Sbjct: 288 LRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLL 347
Query: 434 GLRVTQFN 441
G+ +T +
Sbjct: 348 GITLTNLD 355
>gi|161723133|ref|YP_442389.2| DNA polymerase IV [Burkholderia thailandensis E264]
Length = 392
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 134/356 (37%), Positives = 197/356 (55%), Gaps = 31/356 (8%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPG 158
+R +H D D FYA+VE +PSL+G+P+AVG +I T NYEARRFGV +AM
Sbjct: 21 FARKIIHCDCDCFYASVEMRDDPSLRGRPLAVGGRPDQRGVIATCNYEARRFGVHSAMSS 80
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS 218
+A + CP+L+ +P+ KY S L ++ Y P+ SLDEAYLD++ R G S
Sbjct: 81 ALAMRKCPDLLILPSAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYLDVSRATRCHG-S 139
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISS 277
G IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+G FV+ P++ V F+++
Sbjct: 140 GTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRPHE---VDAFVAA 196
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLGLGS 334
LP+RK+ G+GKVT L D GI TC E L+ SL H F + G+
Sbjct: 197 LPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLHHEFGAFGRRLYELARGIDE 252
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKEGLRG--RTLTLK 389
+ RKS+S E T+ +D A L + AEI +L A +++ G R L +K
Sbjct: 253 RPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALLDARIERAGAARSIRKLYVK 310
Query: 390 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 443
++ A F+ T + ++ + D S+L K A ++RL+G+ V + +ED
Sbjct: 311 IRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQAVRLLGVGV-RIDED 360
>gi|406590293|ref|ZP_11064662.1| DNA polymerase IV [Enterococcus sp. GMD1E]
gi|404469362|gb|EKA14168.1| DNA polymerase IV [Enterococcus sp. GMD1E]
Length = 372
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 122/363 (33%), Positives = 197/363 (54%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 3 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 62
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A ++CP+ IF P D KY+ S R+VF +Y S+DEAYLD
Sbjct: 63 RKFGIHSAMSAQKAYEICPQAIFKPGDHHKYSDISKQVREVFYRYTDIVEPVSIDEAYLD 122
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 123 VTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 178
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 179 APQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGY 234
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 235 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQ 292
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 293 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLT 352
Query: 439 QFN 441
+
Sbjct: 353 NLD 355
>gi|253990696|ref|YP_003042052.1| DNA polymerase IV (DNA-damage-inducible protein P) [Photorhabdus
asymbiotica]
gi|253782146|emb|CAQ85310.1| DNA polymerase IV (DNA-damage-inducible protein P) [Photorhabdus
asymbiotica]
Length = 357
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 170/310 (54%), Gaps = 17/310 (5%)
Query: 101 RDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAM 156
R R +HVD+D FYAA+E NPSL+ P+AVG + +I TANY ARRFGV +AM
Sbjct: 4 RSRMRKIIHVDLDCFYAAIEMRDNPSLRHIPIAVGGSADKRGVISTANYPARRFGVHSAM 63
Query: 157 PGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERG 216
P +A KLCP+L +P Y S R++F +Y SLDEAYLD+T+ C
Sbjct: 64 PTAMALKLCPQLKVLPGRMALYKEVSQNIRQIFSRYTEWIEPLSLDEAYLDVTD-CHHCY 122
Query: 217 ISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFIS 276
S IA+E+R S+++E LT SAG+AP + LAK+ SDINKPNGQ+V+P DR+A F+
Sbjct: 123 GSATLIAQEIRKSIFDELQLTASAGIAPVKFLAKIASDINKPNGQYVIPPDRVA--DFVK 180
Query: 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
LP+ KI G+GKV L ++ G+ TC ++ + ++ G+
Sbjct: 181 VLPLGKIPGVGKVMVQRLTNM-GLETCSDVQKYDVIVLVKQLGKFGQVLWDRCHGIDERL 239
Query: 337 TPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKE------GLRGRTLTLKL 390
R RKSI E+T + + + + E+ E L +++K LR +KL
Sbjct: 240 VNPDRLRKSIGVEQTLAKDIHQ---WEQCTELIESLYLELEKRLSNVKPDLRIARQGVKL 296
Query: 391 KTASFEVRTR 400
K F++ T+
Sbjct: 297 KFEDFQLTTQ 306
>gi|254491040|ref|ZP_05104221.1| ImpB/MucB/SamB family [Methylophaga thiooxidans DMS010]
gi|224463553|gb|EEF79821.1| ImpB/MucB/SamB family [Methylophaga thiooxydans DMS010]
Length = 362
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 123/348 (35%), Positives = 191/348 (54%), Gaps = 20/348 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +HVDMDAF+A+VE +P +GKP+ VG + ++ +YEAR+FG+ +AMP
Sbjct: 5 RKIIHVDMDAFFASVEQRDHPDYRGKPLIVGGQPDSRGVVAACSYEARKFGIHSAMPCSR 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A +LCP+ IFV F Y S R +F +Y SLDEAYLD+T G S
Sbjct: 65 AYRLCPQAIFVKPRFDAYREVSQQIRDIFWRYASEVEPLSLDEAYLDVTYTEDFNG-SAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFV-LPNDRMAVMTFISSLP 279
IA+ ++ + +E L SAGV+ N+ LAK+ SD++KPNG +V LP A F+S L
Sbjct: 124 LIAKAIKQDILQETNLYASAGVSYNKFLAKIASDMDKPNGLYVILPQQGEA---FVSELA 180
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
I K GIG TE ++ + GI T ++ QK + ++ ++ +
Sbjct: 181 IGKFHGIGPATEAKMKQL-GIATGYDLRQKSEAELTERFGKSGQYYFNIARAIDERPVRS 239
Query: 340 ARFRKSISSERTF-----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
R RKS+ E TF SV E L KL+++A+++ + K+ L+ RT+T+K+K +
Sbjct: 240 TRIRKSLGKETTFSHDILSVPE----LTAKLSDLADIVLESLAKQNLKARTVTVKVKYSD 295
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL-PVSLRLIGLRVTQFN 441
F+ TRA TL+ I+S++ +L + E ++RL+GL ++ F+
Sbjct: 296 FQQVTRAQTLEHSIASADLNEWIPKLLARTEAGQKAVRLVGLSLSGFD 343
>gi|395490223|ref|ZP_10421802.1| DNA-directed DNA polymerase [Sphingomonas sp. PAMC 26617]
Length = 364
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 123/344 (35%), Positives = 194/344 (56%), Gaps = 12/344 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAF+A+VE +P+L+GKP+AVG ++ A+YEAR FGVR+A+P A
Sbjct: 11 RKIIHVDMDAFFASVEQRDDPALRGKPIAVGHAAARGVVAAASYEARVFGVRSALPSVTA 70
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ CP+L+FVP F Y S + +F Y P SLDEAYLD+T ++ +
Sbjct: 71 LRRCPDLVFVPPRFDVYKAVSRQIQAIFRDYTPLVQPLSLDEAYLDVTANLQDLP-TAWA 129
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
A+ +R + EE GLT SAG++ N+ LAK+ SD KPNGQF + D A ++ +LP+
Sbjct: 130 TAKAIRARILEETGLTASAGISYNKFLAKLASDQRKPNGQFAVTPDMGA--AWVETLPVS 187
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+ G+G VT + + GI T ++ K L A F ++ AD++ ++ G
Sbjct: 188 RFHGVGPVTAKKMHRL-GITTGADLRAKSIDFLRANFGNA-ADWYHAIARGEDHRPVDPD 245
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS SE TF+ D + + ++A+ + A K GRT+T+K+K F+ T
Sbjct: 246 RIRKSSGSETTFNRDLLDPVEIATGVQQMADDVWAWCAKAEAYGRTVTVKVKYNDFQQIT 305
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFN 441
R+ T I ++ + ++ L+++ LP + +RL+G+ V+ F+
Sbjct: 306 RSRTYPGPIDTAAKLSAASAELIRSVLPPTKGIRLVGVTVSTFD 349
>gi|256829594|ref|YP_003158322.1| DNA-directed DNA polymerase [Desulfomicrobium baculatum DSM 4028]
gi|256578770|gb|ACU89906.1| DNA-directed DNA polymerase [Desulfomicrobium baculatum DSM 4028]
Length = 412
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 128/360 (35%), Positives = 183/360 (50%), Gaps = 10/360 (2%)
Query: 97 LEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT--MSMICTANYEARRFGVRA 154
L A D R LH+DMDAF+ +VE +P L+GKP+ +G + A+YEAR++G+R+
Sbjct: 5 LRAVPDFKRVILHLDMDAFFTSVEQADDPLLQGKPVVIGQSLRGVASAASYEARKYGIRS 64
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AMP A+KLCP +F+P ++Y S + P AS+DEAY DI+ R
Sbjct: 65 AMPIVQAKKLCPHAVFLPGRMSRYREISVKIMNIMRALCPLVEQASVDEAYADISGTRRI 124
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 273
G IA L+ + LTCS G+APN+ LAK+ SD NKP G F+ P D V
Sbjct: 125 FGPPE-NIARRLKAEILAATNLTCSVGIAPNKFLAKIASDWNKPGGLTFIPPAD---VPA 180
Query: 274 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLG 333
F+ LP+ +I G+GK + LR + G+ T +L F G+
Sbjct: 181 FLRDLPLGRIPGVGKQFQEELRRI-GVTTIPHVLAHPRTYWNELMGKRGAFLHDRACGID 239
Query: 334 STNTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
+ KS S+E T T D+ LL R L AE + +++ G +G T+TLK+K
Sbjct: 240 DSPVVPGSDPKSCSAENTLDRDTLDRTLLERWLLIQAERIGRELRGLGKKGLTVTLKIKF 299
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNEDKVRAPSDP 451
F TR+ TL + + +I + A +LL AE LP +RLIG V+ F + P P
Sbjct: 300 QDFSSITRSRTLARPTDITTEIFEAARMLLTAEKLPRPVRLIGTGVSNFRFVQAELPLMP 359
>gi|402572616|ref|YP_006621959.1| nucleotidyltransferase/DNA polymerase [Desulfosporosinus meridiei
DSM 13257]
gi|402253813|gb|AFQ44088.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfosporosinus meridiei DSM 13257]
Length = 388
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/345 (35%), Positives = 189/345 (54%), Gaps = 12/345 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R LHVDMDAFYA+VE +PSL GKP+ VG + ++ A+YEAR++G+R+AMP
Sbjct: 8 RKILHVDMDAFYASVEQRDDPSLLGKPVVVGGRPNSRGVVSAASYEARKYGIRSAMPVAE 67
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A + CP+ +F+P +F KY S R++F Y P SLDEA+LD+T R G +
Sbjct: 68 AARRCPDAVFLPVNFKKYREVSWQIREIFLTYTPMVEPISLDEAFLDVTGSTRLFGPAE- 126
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA ++ + +E LT S G A N+ LAK+ SD+ KP+G V+ D+ V F+ LPI
Sbjct: 127 DIALTIKLRIRQELSLTASVGFACNKFLAKLASDLKKPDGFVVVHPDK--VQEFLDPLPI 184
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+I G+G+ T L INT +++ + L +F + + + G+
Sbjct: 185 ERIWGVGEKTAEQLHS-HRINTVKDLRSLELKFLTKLFGSLGSQLY-QLARGIDDRPVES 242
Query: 340 ARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R KSI E TF S D L + L +A + ++KE LRGRT+TLK++ F
Sbjct: 243 DRVVKSIGRETTFESDIRDGDFLEKTLLMLAIDVGRSLRKEALRGRTVTLKVRYDDFRTL 302
Query: 399 TRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFNE 442
+R+ T+ + + I + A S+L + L LRLIG+ ++ +
Sbjct: 303 SRSRTIHRATDLDDVIFQEACSLLSELSLKQPLRLIGVTMSNLTD 347
>gi|430826869|ref|ZP_19445038.1| DNA polymerase IV [Enterococcus faecium E0164]
gi|430444618|gb|ELA54453.1| DNA polymerase IV [Enterococcus faecium E0164]
Length = 372
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 197/363 (54%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 3 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 62
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF +Y S+DEAYLD
Sbjct: 63 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSDISRQVREVFYRYTDIVEPVSIDEAYLD 122
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 123 VTENKINCK----SAIKIARMIQADIWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 178
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 179 APQD---AVPFLKALPIEKFHGVGKRTVPRMHEL-GIYTGKDLYECTEMILIRNFGKMGY 234
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 235 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-TQLRQLAEKVEEALRRVQ 292
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 293 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLT 352
Query: 439 QFN 441
+
Sbjct: 353 NLD 355
>gi|424762996|ref|ZP_18190475.1| putative DNA polymerase IV [Enterococcus faecium TX1337RF]
gi|431763831|ref|ZP_19552379.1| DNA polymerase IV [Enterococcus faecium E3548]
gi|402423596|gb|EJV55806.1| putative DNA polymerase IV [Enterococcus faecium TX1337RF]
gi|430621655|gb|ELB58407.1| DNA polymerase IV [Enterococcus faecium E3548]
Length = 373
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 196/363 (53%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 4 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 63
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF Y S+DEAYLD
Sbjct: 64 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYLD 123
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 124 VTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 179
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 180 APQD---AVPFLKTLPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGY 235
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 236 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRVQ 293
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 294 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLT 353
Query: 439 QFN 441
+
Sbjct: 354 NLD 356
>gi|422416497|ref|ZP_16493454.1| DNA polymerase IV [Listeria innocua FSL J1-023]
gi|313623066|gb|EFR93347.1| DNA polymerase IV [Listeria innocua FSL J1-023]
Length = 356
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 128/351 (36%), Positives = 191/351 (54%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A E++ ++Y E LT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATMVAREIQQTIYHELALTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYHLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEERLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|182679061|ref|YP_001833207.1| DNA-directed DNA polymerase [Beijerinckia indica subsp. indica ATCC
9039]
gi|182634944|gb|ACB95718.1| DNA-directed DNA polymerase [Beijerinckia indica subsp. indica ATCC
9039]
Length = 373
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 182/344 (52%), Gaps = 14/344 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA---NYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE +P L+G+P+AVG+ +YEAR+FGV +AMP A
Sbjct: 16 RKIIHIDMDAFYASVEQRDDPGLRGRPVAVGSARARGVVAAASYEARKFGVHSAMPSVTA 75
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ CP+LIFVP F Y S R +F ++ SLDEAYLD+T R S E
Sbjct: 76 LRKCPDLIFVPPRFDIYKAVSRRIRAIFAEHTALIEPLSLDEAYLDVTSNLRNVA-SATE 134
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAE++R + E GLT SAGV+ N+ LAK+ SD NKPNG FV+ +M F+ +LP+
Sbjct: 135 IAEQIRARILAETGLTASAGVSYNKFLAKLASDHNKPNGLFVI-TPKMGP-GFVEALPVS 192
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
K GIG T + + I T ++ + ++ + G+ R
Sbjct: 193 KFHGIGPATAAKMEKL-AIATGRDLKARPLAFLQQHFGKAGTYYYWIARGVDERPVRPDR 251
Query: 342 FRKSISSERTFSV---TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
RKSI +E TF++ T + A Y L I E + + LR RT+TLK+K A F+
Sbjct: 252 ERKSIGAENTFAIDLYTFEAA--YAALTPIMEKVWRSREMMNLRARTVTLKVKYADFQQI 309
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 440
TR+ T + I + + + LL P + +RL+G+ ++ F
Sbjct: 310 TRSRTDDEGIVTRVLFEERVASLLAPLFPTTKGIRLLGVTLSAF 353
>gi|288803159|ref|ZP_06408594.1| ATP-NAD kinase [Prevotella melaninogenica D18]
gi|288334420|gb|EFC72860.1| ATP-NAD kinase [Prevotella melaninogenica D18]
Length = 366
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 129/348 (37%), Positives = 195/348 (56%), Gaps = 26/348 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE NP L+GKP+AVG ++ TA+YEAR FGV +AM A
Sbjct: 2 RKIIHIDMDAFFASVEQRDNPELRGKPIAVGFDGPRGVVSTASYEARPFGVHSAMSMAQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
++ CP+LI V + F +Y S VF +Y SLDEA+LD++E ++GI +
Sbjct: 62 KRRCPQLIVVSSHFDRYKEVSRQIHAVFHEYTDLVEPISLDEAFLDVSE--NKKGIDLAV 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+E++ ++E LT SAG++ N+LLAK+ SD+ KPNG F + DR + FI LP+
Sbjct: 120 DIAKEIKQKIFERTSLTASAGISYNKLLAKIASDMRKPNGIFTVHPDR--ALDFIGKLPV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K+ G+G T + + G+ T E++ + L VF + + + G+ +
Sbjct: 178 EKLWGVGPKTAERMHGM-GVFTGEQLREISREHLVQVFG-KMGNVYYNFSRGIDNRPVIV 235
Query: 340 ARFRKSISSERTFSV---TEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
+ RKS+ ERTF E K + LY E+ E + A + +GRTLTLKLK +
Sbjct: 236 SYERKSVGCERTFLEDLHIESKIIIELYHITLELVERIKA----KDFKGRTLTLKLKWDA 291
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVT 438
TR++T K + + ++IL A LLK P+ RL+GL V+
Sbjct: 292 TTQITRSLTQDKILRTKDNILPLAKQLLKDTDYHNRPI--RLMGLSVS 337
>gi|410495674|ref|YP_006905520.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
gi|410440834|emb|CCI63462.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
Length = 365
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 199/362 (54%), Gaps = 31/362 (8%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPVLKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY R +F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPQAIFISGNYEKYRSVGQEIRHIFKRYTDLVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ ++ E LTCSAGV+ N+ LAK+ SD KP+G VLP D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWNEVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQD---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLG 331
+F++ LPI K G+GK + L ++ GI T +++L+ + L F D + G
Sbjct: 184 SFLADLPIEKFHGVGKKSVEKLHEM-GIYTGQDLLEVPEMTLIDHFGRFGFDLYRK-ARG 241
Query: 332 LGSTNTPQARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKEGLRGRT 385
+ + R RKSI SERT++ LLY++ AEI A + A +Q G+T
Sbjct: 242 ISHSPVKPNRIRKSIGSERTYA-----KLLYQEADIKAEISKNARRVVALLQDHKKLGKT 296
Query: 386 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFNED 443
+ LK++ A F T+ VTL + + I + A + E V +RL+G+ +T ED
Sbjct: 297 IVLKVRYADFTTLTKRVTLPELTRDAAQIEQVAESIFDTLPEHTVGIRLLGVTMTNL-ED 355
Query: 444 KV 445
K+
Sbjct: 356 KM 357
>gi|257888438|ref|ZP_05668091.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733]
gi|257899185|ref|ZP_05678838.1| DNA directed DNA polymerase [Enterococcus faecium Com15]
gi|431049963|ref|ZP_19493323.1| DNA polymerase IV [Enterococcus faecium E1590]
gi|431065032|ref|ZP_19493855.1| DNA polymerase IV [Enterococcus faecium E1604]
gi|431594896|ref|ZP_19522002.1| DNA polymerase IV [Enterococcus faecium E1861]
gi|431738337|ref|ZP_19527282.1| DNA polymerase IV [Enterococcus faecium E1972]
gi|257824492|gb|EEV51424.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733]
gi|257837097|gb|EEV62171.1| DNA directed DNA polymerase [Enterococcus faecium Com15]
gi|430560372|gb|ELA99669.1| DNA polymerase IV [Enterococcus faecium E1590]
gi|430568652|gb|ELB07691.1| DNA polymerase IV [Enterococcus faecium E1604]
gi|430590822|gb|ELB28868.1| DNA polymerase IV [Enterococcus faecium E1861]
gi|430597775|gb|ELB35558.1| DNA polymerase IV [Enterococcus faecium E1972]
Length = 373
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/368 (34%), Positives = 195/368 (52%), Gaps = 36/368 (9%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 4 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 63
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF Y S+DEAYLD
Sbjct: 64 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYLD 123
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 124 VTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 179
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQKGSLLCAVF 317
P D + F+ +LPI K G+GK T + ++ GI T C EM+ L F
Sbjct: 180 APQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM-----LIRNF 230
Query: 318 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSAD 375
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE +
Sbjct: 231 GKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEA 288
Query: 376 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLI 433
+++ G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+
Sbjct: 289 LRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLL 348
Query: 434 GLRVTQFN 441
G+ +T +
Sbjct: 349 GITLTNLD 356
>gi|284036191|ref|YP_003386121.1| DNA-directed DNA polymerase [Spirosoma linguale DSM 74]
gi|283815484|gb|ADB37322.1| DNA-directed DNA polymerase [Spirosoma linguale DSM 74]
Length = 359
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/344 (34%), Positives = 189/344 (54%), Gaps = 10/344 (2%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFI 160
+R +H+DMDAFYA+VE NP L+ KP+AVG ++ A+YEAR++GVR+AM I
Sbjct: 6 NRKIIHIDMDAFYASVEQRDNPELRNKPLAVGGSRQRGVVAAASYEARQYGVRSAMASSI 65
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A + CP+L+FV F Y S R +F +Y SLDEAYLD+T+ S
Sbjct: 66 ALRKCPDLLFVKPRFDVYKAVSSQIRAIFARYTDLIEPLSLDEAYLDVTDTLPVNS-SAT 124
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ ++ + EE LT SAGV+ N+ LAK+ SD KP+G +V+ + F+ L +
Sbjct: 125 QIAQLIKEQIKEETLLTASAGVSYNKFLAKLASDYRKPDGLYVIKPHQGP--GFVEGLKV 182
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+ GIG+VT + + GI T ++ ++ + S+ +
Sbjct: 183 GQFHGIGRVTAGKMNQL-GIYTGLDLREQTEAFLTRHFGKVGFHYYSIARAIDHRPVTPN 241
Query: 341 RFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ SE TF+ D+A L +L + + + + ++ +RGRTLTLK+K A FE T
Sbjct: 242 RIRKSVGSENTFADDLMDQAQLIDQLLPLVDSVWSYCERTSVRGRTLTLKVKYADFEQIT 301
Query: 400 RAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFN 441
R+ T +SS +++ A+ LL+ LP +RL+G+ ++ +
Sbjct: 302 RSRTALNLLSSKTTLMQIAADLLETLFPLPKGIRLLGVSLSNLH 345
>gi|308447175|ref|XP_003087353.1| hypothetical protein CRE_25044 [Caenorhabditis remanei]
gi|308257152|gb|EFP01105.1| hypothetical protein CRE_25044 [Caenorhabditis remanei]
Length = 636
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/355 (35%), Positives = 197/355 (55%), Gaps = 17/355 (4%)
Query: 106 SWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIAR 162
S LHVDMD+F+ +VE L P L+G P AV S++ +A+YEARRFGVR+AMP A+
Sbjct: 17 SMLHVDMDSFFVSVELLERPELRGVPTAVAFDTARSVVSSASYEARRFGVRSAMPVGRAK 76
Query: 163 KLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEI 222
+LCP+LI +P +KY S +VF ++ P S+DEA+LD+ + G EI
Sbjct: 77 QLCPQLILIPPVHSKYRDASRAVMRVFEEFTPLVEPLSIDEAFLDVAGSLKLFG-EPTEI 135
Query: 223 AEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRK 282
A +LR V E+ GL S G+A + +AK+ S KP+G +P R + F+ LP+
Sbjct: 136 ARQLRARVREQTGLPASVGLAGTKFIAKLASQRAKPDGILEIPPAR--TLEFLHPLPVEA 193
Query: 283 IGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
+ G+GK T L+ I T E+ ++ L + ++A ++ G + R
Sbjct: 194 MWGVGKATARSLQS-RAIRTIGELAREPLPSLERLVGRASALKLHALANGRDARAVETER 252
Query: 342 FRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
KSI E TF++ E D+A+L+R+L ++ + +++ G RT+ +K++ +FE TR
Sbjct: 253 IEKSIGHEETFAIDETDRAVLHRELLRLSTRTAERLREHGAEARTIAIKVRWDTFETVTR 312
Query: 401 AVTLQKYISSSEDILKHASVLLKAELPVSL---RLIGLRVTQFNEDKVRAPSDPT 452
+ TL + ++++ I + AS LL+ L VSL RLIG+ E + A SDP
Sbjct: 313 SRTLSEATNATQRIYRTASNLLEG-LGVSLMAVRLIGV----LAEQLIAAGSDPA 362
>gi|83655177|gb|ABC39240.1| DNA polymerase IV [Burkholderia thailandensis E264]
Length = 496
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 134/356 (37%), Positives = 197/356 (55%), Gaps = 31/356 (8%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPG 158
+R +H D D FYA+VE +PSL+G+P+AVG +I T NYEARRFGV +AM
Sbjct: 125 FARKIIHCDCDCFYASVEMRDDPSLRGRPLAVGGRPDQRGVIATCNYEARRFGVHSAMSS 184
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS 218
+A + CP+L+ +P+ KY S L ++ Y P+ SLDEAYLD++ R G S
Sbjct: 185 ALAMRKCPDLLILPSAMDKYRAASRLIMAIYRDYTPDVEPLSLDEAYLDVSRATRCHG-S 243
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISS 277
G IA E+R V + G+T SAGVAPN+ +AK+ SD NKP+G FV+ P++ V F+++
Sbjct: 244 GTLIAREIRERVRDTVGVTVSAGVAPNKFIAKIASDWNKPDGLFVVRPHE---VDAFVAA 300
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLGLGS 334
LP+RK+ G+GKVT L D GI TC E L+ SL H F + G+
Sbjct: 301 LPVRKLHGVGKVTAARL-DKLGIRTCSE-LRGWSLF--DLHHEFGAFGRRLYELARGIDE 356
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEI---AEMLSADMQKEGLRG--RTLTLK 389
+ RKS+S E T+ +D A L + AEI +L A +++ G R L +K
Sbjct: 357 RPVRADQERKSVSVETTY--VQDLATLDQCAAEIRRLTALLDARIERAGAARSIRKLYVK 414
Query: 390 LKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNED 443
++ A F+ T + ++ + D S+L K A ++RL+G+ V + +ED
Sbjct: 415 IRFADFQ-----RTTVECVADATDAETAVSLLAKGLARRKQAVRLLGVGV-RIDED 464
>gi|388602497|ref|ZP_10160893.1| DNA polymerase IV [Vibrio campbellii DS40M4]
gi|444424982|ref|ZP_21220431.1| DNA polymerase IV [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444241767|gb|ELU53287.1| DNA polymerase IV [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 357
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 141/368 (38%), Positives = 185/368 (50%), Gaps = 44/368 (11%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +HVDMD FYAAVE NPS +G +AVG +I T NYEAR+FGVR+AMP
Sbjct: 9 RKIIHVDMDCFYAAVEMRDNPSYRGVALAVGGHEKQRGVISTCNYEARKFGVRSAMPTAR 68
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A ++CP L+ VP Y S R +F +Y SLDEAYLD+T+ RG S
Sbjct: 69 ALQICPNLLVVPGRMHVYKQVSQQIRAIFERYTQLIEPLSLDEAYLDVTDSTACRG-SAT 127
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IAE +R ++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P D+ V + LP+
Sbjct: 128 LIAESIRRDIHTELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPPDK--VQEVVDKLPL 185
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G+GKV+ L G CE++ L F A + G+
Sbjct: 186 EKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQFGRQGASLW-KRSHGIDDREVVV 243
Query: 340 ARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSAD--MQKEGLRGRTL 386
R RKS+ ERTFS V EDK L+ +L E S D + K+G
Sbjct: 244 ERERKSVGVERTFSENIATYDECWQVIEDK--LFPELERRLEKASPDKSIIKQG------ 295
Query: 387 TLKLKTASFEVRT-----RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFN 441
+KLK A F++ T + L+ + DILK + +RL+GL V
Sbjct: 296 -IKLKFADFQLTTIEHIHPQLELEDFKVLLRDILKRQN-------GREIRLLGLSVMLKP 347
Query: 442 EDKVRAPS 449
E + R S
Sbjct: 348 EQQARQLS 355
>gi|22537865|ref|NP_688716.1| DNA polymerase IV [Streptococcus agalactiae 2603V/R]
gi|25011810|ref|NP_736205.1| DNA polymerase IV [Streptococcus agalactiae NEM316]
gi|76787674|ref|YP_330334.1| DNA polymerase IV [Streptococcus agalactiae A909]
gi|76798415|ref|ZP_00780656.1| DNA polymerase IV (Pol IV) [Streptococcus agalactiae 18RS21]
gi|77405963|ref|ZP_00783042.1| DNA-damage-inducible protein P [Streptococcus agalactiae H36B]
gi|77413674|ref|ZP_00789858.1| DNA-damage-inducible protein P [Streptococcus agalactiae 515]
gi|406710106|ref|YP_006764832.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae
GD201008-001]
gi|417006108|ref|ZP_11944678.1| DNA polymerase IV [Streptococcus agalactiae FSL S3-026]
gi|424048829|ref|ZP_17786380.1| DNA polymerase IV [Streptococcus agalactiae ZQ0910]
gi|81588478|sp|Q8DXW9.1|DPO4_STRA5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81588721|sp|Q8E3I8.1|DPO4_STRA3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|123601318|sp|Q3JZG9.1|DPO4_STRA1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|22534761|gb|AAN00589.1|AE014270_7 DNA-damage-inducible protein P [Streptococcus agalactiae 2603V/R]
gi|24413351|emb|CAD47430.1| Unknown [Streptococcus agalactiae NEM316]
gi|76562731|gb|ABA45315.1| DNA polymerase IV [Streptococcus agalactiae A909]
gi|76586247|gb|EAO62764.1| DNA polymerase IV (Pol IV) [Streptococcus agalactiae 18RS21]
gi|77160274|gb|EAO71401.1| DNA-damage-inducible protein P [Streptococcus agalactiae 515]
gi|77175415|gb|EAO78205.1| DNA-damage-inducible protein P [Streptococcus agalactiae H36B]
gi|341576289|gb|EGS26700.1| DNA polymerase IV [Streptococcus agalactiae FSL S3-026]
gi|389649850|gb|EIM71325.1| DNA polymerase IV [Streptococcus agalactiae ZQ0910]
gi|406650991|gb|AFS46392.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae
GD201008-001]
Length = 364
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/350 (34%), Positives = 195/350 (55%), Gaps = 20/350 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+A+VE NPSLKGKP+ +G+ ++ T NYEAR+FGV +
Sbjct: 9 DTSRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY R +F KY S+DEAYLD+TE +
Sbjct: 69 AMSSKEAYERCPQAIFISGNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVTE--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S +++A+ ++ ++ + LTCSAG++ N+ LAK+ SD KP G +LP+
Sbjct: 127 MGIKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQ---AQ 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLG 331
F+ LPI K G+GK + L G+ T E++L + L +F D + G
Sbjct: 184 DFLKPLPIEKFHGVGKRSVEKLH-ALGVYTGEDLLSLSEISLIDMFGRFGYDLYRK-ARG 241
Query: 332 LGSTNTPQARFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 390
+ ++ R RKSI SE+T+ + ++A + ++++ + + A ++K G+T+ LK+
Sbjct: 242 INASPVKPDRVRKSIGSEKTYGKLLYNEADIKAEISKNVQRVVASLEKNKKVGKTIVLKV 301
Query: 391 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVT 438
+ A FE T+ +TL++Y + I + A + E +RL+G+ VT
Sbjct: 302 RYADFETLTKRMTLEEYTQDFQIIDQVAKAIFDTLEESVFGIRLLGVTVT 351
>gi|223044002|ref|ZP_03614042.1| DNA polymerase IV (Pol IV) [Staphylococcus capitis SK14]
gi|417906353|ref|ZP_12550143.1| DNA polymerase IV [Staphylococcus capitis VCU116]
gi|222442545|gb|EEE48650.1| DNA polymerase IV (Pol IV) [Staphylococcus capitis SK14]
gi|341598009|gb|EGS40527.1| DNA polymerase IV [Staphylococcus capitis VCU116]
Length = 356
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 122/351 (34%), Positives = 187/351 (53%), Gaps = 15/351 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPQLKGKPVIVGGKASHRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP +V + F Y S +F Y SLDEAYLDIT + R +
Sbjct: 64 AHKLCPNGYYVTSRFGAYREVSQQIMDIFRSYTEIVEPMSLDEAYLDITHLVRP-DMPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPNG V+ D V + +L I
Sbjct: 123 RIANYIRRDIYEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVI--DYQNVHEILMNLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+ G+GK ++ ++ + GI T +++ K L +F + + G+ +
Sbjct: 181 GEFPGVGKASKKVMHN-NGIYTGQDLYDKDEFELIRLFGKRGRGLY-NKARGIDNNEVKA 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +ERTFS V +D +L RK+ E++ + + K G+T+T+K+KT +E
Sbjct: 239 TRVRKSVGTERTFSTDVNDDDEIL-RKVWELSGKTAERLNKLQKSGKTVTVKIKTFKYET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNEDKVR 446
++ +L+ + S DI A L + + +RLIG+ V + R
Sbjct: 298 LSKQTSLRDSVQSENDIYNIAYTLYNDLKDPDIPIRLIGVTVGNLEQSSYR 348
>gi|340782658|ref|YP_004749265.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
gi|340556810|gb|AEK58564.1| DNA polymerase IV [Acidithiobacillus caldus SM-1]
Length = 373
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 178/338 (52%), Gaps = 11/338 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +HVDMDAF+AAVE P L+G P+ VG ++ T +YEARRFG+R+AM
Sbjct: 12 RKIIHVDMDAFFAAVEQRDRPELRGLPVIVGGDPNVRGVVATCSYEARRFGIRSAMSAAR 71
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
AR LCP+ IFV Y S + Y SLDEA+LD+T + G +
Sbjct: 72 ARSLCPQAIFVRPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFLDVTAATTD-GTLAV 130
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
EIA E+ ++ E GLT SAGV+ N+LLAK+ SD KP+G FV+P +R + F++ LP+
Sbjct: 131 EIAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPPERG--LAFLAPLPV 188
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
K+ G+G T L G+ T ++ + +F V + +
Sbjct: 189 GKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFGKSGGWFYDVARAIDERPVQPS 247
Query: 341 RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +ERTFS D++++ L E+A ++A +Q L G T+ +K + F T
Sbjct: 248 RQRKSVGTERTFSKNLADRSVMLTTLQEMAAQVAARLQVLHLAGHTVHIKARFPDFTTVT 307
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGL 435
RA T + I S++ I LL +P S+RL+G+
Sbjct: 308 RAYTATEGIGSADAIAAWLPELLDRAVPKSTSVRLLGM 345
>gi|357634774|ref|ZP_09132652.1| DNA-directed DNA polymerase [Desulfovibrio sp. FW1012B]
gi|357583328|gb|EHJ48661.1| DNA-directed DNA polymerase [Desulfovibrio sp. FW1012B]
Length = 398
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/340 (36%), Positives = 183/340 (53%), Gaps = 8/340 (2%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGT--MSMICTANYEARRFGVRAAMPGFIARKLC 165
LH+DMDAF+A+VE L +PSL+GKP+ +G ++ A+YEAR +GVR+AMP AR+ C
Sbjct: 5 LHLDMDAFFASVEQLDDPSLRGKPVIIGQDLRGVVSAASYEARVYGVRSAMPVAEARRRC 64
Query: 166 PELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEE 225
P +F+ + +Y+ S + P AS+DEAY+D+T G +
Sbjct: 65 PHGVFLSGNRRRYSEVSRIVMATLENVSPLVEPASIDEAYVDVTGTETLFGPPE-ALGRR 123
Query: 226 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGG 285
++ V E GL CS G+AP + +AK+ SD +KP+G V+ + V F++ LP+ KI G
Sbjct: 124 VKQMVREATGLPCSVGIAPVKFIAKIASDYDKPDGLTVVSEADVPV--FLADLPVGKIPG 181
Query: 286 IGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKS 345
+G+ E L GI ++L + G GST AR KS
Sbjct: 182 VGRRAEASL-SRLGIRRVGDILAYPPEFLERHCGKWGLDLYAKAHGRGSTTVAVAREAKS 240
Query: 346 ISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL 404
+S+E TF T D+ L L +E + +++++GL GRT+TLKLK F TR+ TL
Sbjct: 241 VSAENTFDTDTADRERLASWLLHQSERIGRELRQDGLAGRTITLKLKFNDFRQITRSRTL 300
Query: 405 QKYISSSEDILKHASVLLKAE-LPVSLRLIGLRVTQFNED 443
+ I S I A+ LL AE LP +RLIG+ V+ F +
Sbjct: 301 PEPIDSDGAIFAAATALLDAEPLPRPVRLIGVGVSNFGRE 340
>gi|257066126|ref|YP_003152382.1| DNA-directed DNA polymerase [Anaerococcus prevotii DSM 20548]
gi|256798006|gb|ACV28661.1| DNA-directed DNA polymerase [Anaerococcus prevotii DSM 20548]
Length = 345
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/354 (35%), Positives = 196/354 (55%), Gaps = 28/354 (7%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKL 164
HVD DAFYA+ E L NP +K P+AVG +S ++ TANY+AR FG+ +AMP FIA++L
Sbjct: 5 FHVDCDAFYASCEELRNPKMKNHPLAVGGLSNKSILTTANYKAREFGLHSAMPVFIAKEL 64
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFC---KYDPNFMAASLDEAYLDITEVCRERGISGIE 221
CP LI +P D + YY +++VF +Y S+DEAYL + ++
Sbjct: 65 CPNLILLPVD---HKYYRKKSKEVFSLVKEYAKLMEQVSVDEAYLLVETDSPKK------ 115
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A +L+ V + G+ S G++ N+ LAK+ SD KP+G + + + F+ ++ +
Sbjct: 116 LARKLQEEVLRKTGIGISIGISYNKFLAKLASDWQKPHGITQIRKEDLDY--FLPNISVN 173
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
K+ GIGK T L + GI E++L+ L F A + V G+ +
Sbjct: 174 KVHGIGKKTSERLNKI-GIYKVEDLLKLDYEYLIDNFGKQGA-YIYHVIRGVDDRKINPS 231
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKSI ERTF+ T D A+L L ++E++ +M + ++G+T+ LK+K A F+ T
Sbjct: 232 RVRKSIGKERTFAQNTNDMAILTSYLKNLSELIEDEMDIKNIQGKTVNLKIKDAKFKNHT 291
Query: 400 RAVTLQKYISSSEDILKHASVLL----KAELPVSLRLIGLRVTQFNEDKVRAPS 449
R++TLQ+ I ++DI A LL K E+ LRLIG+ ++ E K+ S
Sbjct: 292 RSITLQEPIYRAKDIYNEALSLLEDLHKGEM---LRLIGISLSNLQERKLNQLS 342
>gi|269960538|ref|ZP_06174910.1| DNA polymerase IV [Vibrio harveyi 1DA3]
gi|269834615|gb|EEZ88702.1| DNA polymerase IV [Vibrio harveyi 1DA3]
Length = 354
Score = 189 bits (481), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 141/366 (38%), Positives = 188/366 (51%), Gaps = 40/366 (10%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +HVDMD FYAAVE NP+ +G +AVG +I T NYEAR+FGVR+AMP
Sbjct: 6 RKIIHVDMDCFYAAVEMRDNPNYRGIALAVGGHEKQRGVISTCNYEARKFGVRSAMPTAR 65
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE--VCRERGIS 218
A +LCP L+ VP Y S R +F +Y SLDEAYLD+T+ VCR S
Sbjct: 66 ALQLCPNLLVVPGRMHVYKQVSQQIRAIFERYTSLIEPLSLDEAYLDVTDSTVCRG---S 122
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
IAE +R + E G+T SAG+AP + LAKV SD+NKPNGQFV+P D+ V + L
Sbjct: 123 ATLIAESIRNDIRNELGITASAGIAPIKFLAKVASDMNKPNGQFVIPPDK--VQEVVDKL 180
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNT 337
P+ KI G+GKV+ L G CE++ L F A + G+
Sbjct: 181 PLEKIPGVGKVSLEKLHQA-GFYLCEDIKNSDYRELLRQFGRQGASLW-KRSHGIDDREV 238
Query: 338 PQARFRKSISSERTFS-----------VTEDKALLYRKLAEIAEMLSAD--MQKEGLRGR 384
R RKS+ ERTFS V EDK LY +L E S D + K+G
Sbjct: 239 VVERERKSVGVERTFSENISTYDECWKVIEDK--LYPELERRLEKASPDKSIIKQG---- 292
Query: 385 TLTLKLKTASFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNED 443
+KLK A F++ T + Q + + +L+ +LK + +RL+GL V E+
Sbjct: 293 ---IKLKFADFQLTTIEHIHPQLELDDFKVLLRD---ILKRQNGREIRLLGLSVMLKPEE 346
Query: 444 KVRAPS 449
+ R S
Sbjct: 347 QARQLS 352
>gi|145595751|ref|YP_001160048.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440]
gi|145305088|gb|ABP55670.1| DNA-directed DNA polymerase [Salinispora tropica CNB-440]
Length = 419
Score = 189 bits (481), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 178/339 (52%), Gaps = 10/339 (2%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKL 164
LHVDMDAF+AAVE P L+G+P+ VG + ++ +A+Y ARR+GVR+AMP AR L
Sbjct: 27 LHVDMDAFFAAVEVHRRPELRGRPVVVGGLGQRGVVSSASYPARRYGVRSAMPTARARAL 86
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 224
CP +F+P DFT YT S ++F P SLDEA+LD+ R G IA
Sbjct: 87 CPHAVFLPPDFTAYTTASRRVMQIFRDVTPLVEPLSLDEAFLDVAGAQRLFGRPS-AIAR 145
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 284
+R V E GLTCS GVA ++ +AK+ S KP+G V+P + V+ F+ LP+ +
Sbjct: 146 LIRERVATEVGLTCSVGVASSKFVAKLGSTRAKPDGLLVVPTAQ--VLDFLHPLPVEALW 203
Query: 285 GIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR 343
G+G+ + LR G+ T E+ Q +L ++ A + G R
Sbjct: 204 GVGERSAETLRR-LGLVTVGELAQAPDGMLRRALGNAAARHLHELAWGRDPRRVTPERGE 262
Query: 344 KSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAV 402
KS+ +E TF V D+ + R L +AE + A +++ G GRT+ LK++ A F +R+
Sbjct: 263 KSVGAEVTFDVDVTDRREIRRALLGLAEKVGARLRRSGQVGRTVALKVRLADFRTVSRSR 322
Query: 403 TLQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQF 440
+L ++ A L P +RL+G+R Q
Sbjct: 323 SLDVPTDVGREMFDIAWALYTTLDPGEPIRLVGVRAEQI 361
>gi|409098882|ref|ZP_11218906.1| DNA-directed DNA polymerase [Pedobacter agri PB92]
Length = 366
Score = 189 bits (481), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 125/350 (35%), Positives = 202/350 (57%), Gaps = 19/350 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMDAFYA+VE P +GKP+ VG + ++ TA+YEAR+FG+++AM
Sbjct: 10 RKIIHIDMDAFYASVEQRDFPEYRGKPIVVGGKPDSRGVVATASYEARQFGIKSAMSCSK 69
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 219
A +LCP IFV F Y+ S R++F +Y SLDEAYLD+TE + GI S
Sbjct: 70 AYQLCPTAIFVYPRFDAYSSVSKSIREIFSRYTDIIEPLSLDEAYLDVTE--DKLGIGSA 127
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 278
I+IA+ ++ ++ E LT SAGV+ N+ +AKV SD+NKP+G F+ P+ + F+ L
Sbjct: 128 IDIAKSIKDAIKNELNLTASAGVSINKFVAKVASDMNKPDGLTFIGPS---KIKAFMEKL 184
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTN 336
P+ K G+GKVT ++ I+T ++ L + LL F S F+ + G+
Sbjct: 185 PVEKFFGVGKVTAAKMK-AMQIHTGSDLKNLSESQLLSQ-FGKS-GKFYYKIVRGIDDRP 241
Query: 337 TPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
R KS+ +E T + T + ++++ L +I+E ++ ++K L+G+T+TLK+K F
Sbjct: 242 VRANRETKSVGAEDTLAEDTNEDSVMHDLLKQISETVAKRLEKYQLKGKTVTLKIKFEDF 301
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSL--RLIGLRVTQFNED 443
++ TR+ + I +E+I A LL SL RL+G+ +++F ++
Sbjct: 302 KLITRSRSFPLAIHKAENIYAEAIKLLNDANIGSLKVRLLGITLSRFYDE 351
>gi|159039002|ref|YP_001538255.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
gi|157917837|gb|ABV99264.1| DNA-directed DNA polymerase [Salinispora arenicola CNS-205]
Length = 419
Score = 189 bits (481), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 176/335 (52%), Gaps = 10/335 (2%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKL 164
LHVDMDAF+A+VE P L+G+P+ VG + ++ +A+Y ARR+GVR+AMP AR L
Sbjct: 27 LHVDMDAFFASVEVRHRPELRGRPVVVGGLGPRGVVSSASYPARRYGVRSAMPTARARAL 86
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 224
CP +F+P DFT YT S ++F P SLDEA+LD+ R G IA
Sbjct: 87 CPHAVFLPPDFTAYTTASRTVMQIFQDVTPLVEPLSLDEAFLDVAGAQRLFGQPS-AIAR 145
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 284
+R V E GLTCS GVA ++ +AK+ S KP+G V+P R V+ F+ LP+ +
Sbjct: 146 LIRERVATEVGLTCSVGVASSKFVAKLGSTRAKPDGMLVVPTAR--VLDFLHPLPVEALW 203
Query: 285 GIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR 343
G+G+ + LR G+ T E+ Q +L + A + G R
Sbjct: 204 GVGERSAETLRR-LGLTTVGELAQAPDGMLRRALGTAAARHLRELAWGKDPRRVTSERED 262
Query: 344 KSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAV 402
KSI +E TF D+ + R L +AE + A +++ G GRT+ LK++ A F +R+
Sbjct: 263 KSIGAEVTFDADVTDRREIRRALLGLAEKVGARLRRSGQVGRTVALKVRLADFRTVSRSR 322
Query: 403 TLQKYISSSEDILKHASVLLKAELPV-SLRLIGLR 436
+L ++ A L A P +RL+G+R
Sbjct: 323 SLDVPTDVGREMFDTAWALYTALDPGEPIRLVGVR 357
>gi|227550409|ref|ZP_03980458.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
gi|293379604|ref|ZP_06625741.1| DNA polymerase IV [Enterococcus faecium PC4.1]
gi|431758358|ref|ZP_19546985.1| DNA polymerase IV [Enterococcus faecium E3083]
gi|227180468|gb|EEI61440.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
gi|292641753|gb|EFF59926.1| DNA polymerase IV [Enterococcus faecium PC4.1]
gi|430617416|gb|ELB54289.1| DNA polymerase IV [Enterococcus faecium E3083]
Length = 373
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 196/363 (53%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 4 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 63
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF Y S+DEAYLD
Sbjct: 64 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYLD 123
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 124 VTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 179
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + + L F
Sbjct: 180 APQD---AVPFLKTLPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMTLIRNFGKMGY 235
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 236 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRVQ 293
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 294 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLT 353
Query: 439 QFN 441
+
Sbjct: 354 NLD 356
>gi|312897481|ref|ZP_07756905.1| putative DNA polymerase IV [Megasphaera micronuciformis F0359]
gi|310621542|gb|EFQ05078.1| putative DNA polymerase IV [Megasphaera micronuciformis F0359]
Length = 395
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 127/366 (34%), Positives = 201/366 (54%), Gaps = 28/366 (7%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKL 164
+HVDMDAFYA+VE NP L+G+P+ VG S ++ TA+YEAR +GV +A+ AR+L
Sbjct: 1 MHVDMDAFYASVEQRDNPELRGRPVIVGGTSDRGVVATASYEARAYGVHSALGTKKARQL 60
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG----- 219
CP+ IF+P Y S RK+F Y P+ SLDEA+LDI+ G+ G
Sbjct: 61 CPDGIFLPPRIAYYRTISRQIRKIFEGYSPDIEPLSLDEAFLDIS------GLHGHYKDV 114
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
+E+ ++ + E+ GL SAG+ PN+ LAK+ SD++KP+G +P + A M ++ LP
Sbjct: 115 LEVGRAVKRDIKEQTGLVASAGIGPNKFLAKLASDLDKPDGLVCIPYGKEAEM--LAPLP 172
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+RKI G+GKVTE+ L G +T + + A+ + G
Sbjct: 173 VRKIWGVGKVTENRLLSA-GYDTIGSIAAASPDKLRPLVGNQAERLYELAHGRDYRRVET 231
Query: 340 ARFRKSISSERTFSVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
A+ KSI +E+T+ +D L + R+L +AE ++ ++K GL GRT+TLK++ F
Sbjct: 232 AQQVKSIGNEQTYE--QDLVLQEDVDRQLRLLAEEVAYRLRKHGLMGRTMTLKIRYNDFT 289
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAE--LPVSLRLIGLRVTQFN----EDKVRAPSD 450
TR+ + + +E+ L ++ L A+ S+RL+G+ V++ +D + A
Sbjct: 290 TETRSESSESMGLYTEEQLYFSARKLYAKKTRKGSVRLLGVTVSKLQTVIIQDSLFAEEP 349
Query: 451 PTQKTL 456
T+K L
Sbjct: 350 TTKKRL 355
>gi|257897187|ref|ZP_05676840.1| DNA damage inducible protein P, partial [Enterococcus faecium
Com12]
gi|257833752|gb|EEV60173.1| DNA damage inducible protein P [Enterococcus faecium Com12]
Length = 371
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 125/367 (34%), Positives = 200/367 (54%), Gaps = 28/367 (7%)
Query: 93 RILELE--ATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTA 143
R++EL+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TA
Sbjct: 2 RMMELQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTA 61
Query: 144 NYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDE 203
NYEAR+FG+ +AM A +LCP+ IF P D KY+ S R+VF Y S+DE
Sbjct: 62 NYEARKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDE 121
Query: 204 AYLDITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG 260
AYLD+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 122 AYLDVTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRG 177
Query: 261 -QFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFS 318
V P D + F+ +LPI K G+GK T + ++ GI T +++ + + L F
Sbjct: 178 ITVVAPQD---AVPFLKTLPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMTLIRNFG 233
Query: 319 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 376
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +
Sbjct: 234 KMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEAL 291
Query: 377 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 434
++ G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G
Sbjct: 292 RRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLG 351
Query: 435 LRVTQFN 441
+ +T +
Sbjct: 352 ITLTNLD 358
>gi|242371796|ref|ZP_04817370.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
gi|242350497|gb|EES42098.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
Length = 356
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 124/351 (35%), Positives = 185/351 (52%), Gaps = 15/351 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASNRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP +V + F Y S ++F Y SLDEAYLDIT + R +
Sbjct: 64 AHKLCPNGYYVTSRFGAYREASQQIMEIFRSYTEIVEPMSLDEAYLDITHLVRP-DMPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPNG V+ D V + L I
Sbjct: 123 RIANYIRRDIYEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVI--DYQNVHEILMHLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI T +++ K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHDN-GIFTGQDLYNKDEFELIRLFGKRGRGLY-NKARGIDNNEVKA 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +ERTFS V +D +L RK+ E++ + + K G+T+T+K+KT +E
Sbjct: 239 TRVRKSVGTERTFSTDVNDDDEIL-RKVWELSGKTAERLNKLQKSGKTVTVKIKTFQYET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNEDKVR 446
++ +L+ + S DI A L + V +RLIG+ V + R
Sbjct: 298 LSKQTSLRDSVQSETDIYNIAYSLYNELKDPDVPIRLIGVTVGNLEQSSYR 348
>gi|398338012|ref|ZP_10522717.1| DNA polymerase IV [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 362
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 128/358 (35%), Positives = 195/358 (54%), Gaps = 32/358 (8%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +HVDMDAFYA+VE P KGKP+ VG + S++ A+YEAR+FG+R+AMP
Sbjct: 4 RKIIHVDMDAFYASVEQRDFPEYKGKPLIVGGPPNSRSVVAAASYEARKFGIRSAMPCSR 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-G 219
A +L P+ IFV FT Y S R++F +Y SLDE YLD+T ++ I
Sbjct: 64 AAQLAPQAIFVFPRFTVYKEVSRQIREIFLEYTDRVEMLSLDEGYLDVT--FNKKNIPFA 121
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISSL 278
+ IA+E+R + + LT S GV ++ +AK+ S+ NKPNG VLP+D V++FI L
Sbjct: 122 VTIAKEIRAEILKRTQLTASVGVGNSKFIAKLASEKNKPNGLTVVLPDD---VISFIDPL 178
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSH--STADFFLSVGLGLGSTN 336
P+ G+GKVT + ++ GI T +++ K + + SH ++ + G
Sbjct: 179 PVSSFHGVGKVTAQKMEEL-GIRTGKDLRAKN--IDELISHFGKMGIYYYKISRGEDDRE 235
Query: 337 TPQARFRKSISSERTFSVTEDKA----LLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
+R RKS+ +E TF +DK LLY +L E+A + ++K GRTLTLK+K
Sbjct: 236 VQSSRERKSLGAETTFE--QDKVDREDLLY-QLREVAVEVEDRLKKRDFAGRTLTLKIKF 292
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQFN 441
F +TR+ TL I + ++ + AS L + ++RL+G+ ++ N
Sbjct: 293 HDFSQKTRSRTLNDPIFDANELFQTASELFEEFFETKDDRIVAVKAIRLLGISLSHPN 350
>gi|410658983|ref|YP_006911354.1| DNA polymerase IV [Dehalobacter sp. DCA]
gi|410661970|ref|YP_006914341.1| DNA polymerase IV [Dehalobacter sp. CF]
gi|409021338|gb|AFV03369.1| DNA polymerase IV [Dehalobacter sp. DCA]
gi|409024326|gb|AFV06356.1| DNA polymerase IV [Dehalobacter sp. CF]
Length = 387
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 186/349 (53%), Gaps = 20/349 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R LH+DMDAFYAAVE NP L GKP+ VG + ++ A+YEAR+FG+ +AMP
Sbjct: 8 RKILHIDMDAFYAAVEQRDNPVLLGKPVIVGGKPNSRGVVSAASYEARKFGIHSAMPMTE 67
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A + CP+ +F+P + KY SD ++F Y P SLDEA+LD+T G +
Sbjct: 68 AFRRCPQAVFLPVNMQKYQEASDRIHEIFLSYTPLVEPLSLDEAFLDVTRSTALFGFAQ- 126
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA ++ + +E GLT S G+APN+ LAK+ SD+ KPNG V+P D+ V F+ L +
Sbjct: 127 DIAVLIKQRIRQELGLTASVGLAPNKFLAKIASDLQKPNGFVVVPPDK--VQEFLDPLEV 184
Query: 281 RKIGGIG-KVTEHI----LRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
++ G+G K E + +R V + + +E S L F + + G+ +
Sbjct: 185 ERVWGVGIKTAEQLHELRVRTVKDLRSLDE-----SALSKRFGVMGKRLY-ELARGIDNR 238
Query: 336 NTPQARFRKSISSERTF-SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
+ R KS+ E TF S D +L ++L E+A + M+K L+ +T+TLK +
Sbjct: 239 SVETERMTKSVGRETTFLSDIADVDVLEKELLELAVDVGRRMRKHSLKAKTITLKARYPD 298
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKA-ELPVSLRLIGLRVTQFNE 442
F +R+ TL + + I A LL+ + LRLIG+ + +
Sbjct: 299 FRTLSRSSTLPQATDLDDRIYHEACTLLRGISMNQPLRLIGITLNNLTD 347
>gi|254974524|ref|ZP_05270996.1| DNA polymerase IV [Clostridium difficile QCD-66c26]
gi|255313647|ref|ZP_05355230.1| DNA polymerase IV [Clostridium difficile QCD-76w55]
gi|255516331|ref|ZP_05384007.1| DNA polymerase IV [Clostridium difficile QCD-97b34]
gi|255649431|ref|ZP_05396333.1| DNA polymerase IV [Clostridium difficile QCD-37x79]
gi|260682597|ref|YP_003213882.1| DNA polymerase IV [Clostridium difficile CD196]
gi|260686197|ref|YP_003217330.1| DNA polymerase IV [Clostridium difficile R20291]
gi|306519510|ref|ZP_07405857.1| DNA polymerase IV [Clostridium difficile QCD-32g58]
gi|384360178|ref|YP_006198030.1| DNA polymerase IV [Clostridium difficile BI1]
gi|260208760|emb|CBA61621.1| DNA polymerase IV [Clostridium difficile CD196]
gi|260212213|emb|CBE02909.1| DNA polymerase IV [Clostridium difficile R20291]
Length = 365
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 123/355 (34%), Positives = 193/355 (54%), Gaps = 26/355 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMDAFYA++E N LKGKP+ VG + ++ T +YEAR+FG+ +AMP +
Sbjct: 5 RKIIHIDMDAFYASIEQRDNKKLKGKPVIVGGNPQSRGVVATCSYEARKFGIHSAMPSAV 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 219
A CP +FV F Y S+ R +F +Y SLDEAYLD+T+ ++ I S
Sbjct: 65 AYNRCPYAVFVRPRFDVYKSVSEQIRDIFYRYTDLVEPLSLDEAYLDVTK--NKKNIDSS 122
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KPNG V+ + F+ LP
Sbjct: 123 IEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEEN--AQDFLDKLP 180
Query: 280 IRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
+ K G+GKVT + L+++ GI T C + + L +F + + G+
Sbjct: 181 VNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----LENIFKKRGYELY-KFARGIDD 234
Query: 335 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
R RKS+ +E T S + D+ L E+ E + ++ G+TLTLK+K
Sbjct: 235 RPVEPNRVRKSVGAETTLSHNLDIDEEETRNILDELCEEVCHRLKSSEKFGKTLTLKIKY 294
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRVTQFNEDK 444
F TR+++L+ YI DI LL+ + V+ +RL+G+ ++ ++ K
Sbjct: 295 EDFTKITRSLSLEHYIDEYNDIRSGVDNLLR-NVEVNGKQIRLLGVTISNLSDKK 348
>gi|424744843|ref|ZP_18173126.1| putative DNA polymerase IV [Acinetobacter baumannii WC-141]
gi|422942623|gb|EKU37670.1| putative DNA polymerase IV [Acinetobacter baumannii WC-141]
Length = 351
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/345 (35%), Positives = 189/345 (54%), Gaps = 14/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE +P L+ P+ + + ++I A+Y AR FG+R+AM A
Sbjct: 2 RKIIHIDMDAFYASVELREHPELRHLPVVISSHHPRAVIAAASYPAREFGLRSAMSMTQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S E
Sbjct: 62 RKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVTENLKQIA-SATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+ ++A TFI LP++
Sbjct: 121 VAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVA--TFIQDLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G+GKVT+ L+ + ++T + LQK ++L F +L G+
Sbjct: 179 KIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAVLVHHFGKYGQQLYLYAQ-GIDHRPVQA 235
Query: 340 ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R R+ IS E TF +AE + ++K+ L R + +KLK +F+
Sbjct: 236 ERARQQISKETTFDSDFTLVQCQPYWQGLAEKVWQTLEKKQLNARGVNIKLKLKNFQTLQ 295
Query: 400 RAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 441
+ + ++ I S +D+++ +LL + ++P RLIG+ V Q
Sbjct: 296 HSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|385792952|ref|YP_005825928.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678277|gb|AEE87406.1| DNA polymerase IV [Francisella cf. novicida Fx1]
Length = 350
Score = 189 bits (480), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 168/284 (59%), Gaps = 17/284 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
+ +H+DMD F+A VE +NPSLK KP AVG + +I T NY AR +G+R+AMP I
Sbjct: 5 KKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGIRSAMPTAI 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E S
Sbjct: 65 AMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEYKNSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ ++ V +F+ LP+
Sbjct: 124 LIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQ--VDSFVKDLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP 338
+K+ G+GKV++ L+ + TC + LQ+ SL L F + + S G+ +
Sbjct: 182 KKLFGVGKVSQEKLK-TMNVETCLD-LQQLSLATLLDKFGKFGNNLY-SYARGIDNREVN 238
Query: 339 QARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKE 379
R RKS+S E T+ ED L KL + + L++ M +E
Sbjct: 239 PVRIRKSVSVENTY--LEDLKTLNACLEKLPSLYDKLTSRMTEE 280
>gi|431099276|ref|ZP_19496442.1| DNA polymerase IV [Enterococcus faecium E1613]
gi|430570777|gb|ELB09716.1| DNA polymerase IV [Enterococcus faecium E1613]
Length = 373
Score = 189 bits (480), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 196/363 (53%), Gaps = 26/363 (7%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 4 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 63
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF Y S+DEAYLD
Sbjct: 64 RKFGIHSAMSAQKAYELCPKAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYLD 123
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 124 VTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 179
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTA 322
P D + F+ +LPI K G+GK T + ++ GI T +++ + +L F
Sbjct: 180 APQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMMLIRNFGKMGY 235
Query: 323 DFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEG 380
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +++
Sbjct: 236 SLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEALRRVQ 293
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVT 438
G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G+ +T
Sbjct: 294 KHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLGITLT 353
Query: 439 QFN 441
+
Sbjct: 354 NLD 356
>gi|314934060|ref|ZP_07841423.1| DNA polymerase IV [Staphylococcus caprae C87]
gi|313653171|gb|EFS16930.1| DNA polymerase IV [Staphylococcus caprae C87]
Length = 356
Score = 189 bits (480), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 123/351 (35%), Positives = 188/351 (53%), Gaps = 15/351 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPRLKGKPVIVGGKASHRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP +V + F Y S ++F Y SLDEAYLDIT + R +
Sbjct: 64 AHKLCPNGYYVTSRFGAYREVSHQIMEIFRSYTEIVEPMSLDEAYLDITHLVRP-DMPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA +R ++E+ LT SAGV+ N+ LAK+ S +NKPNG V+ D V + +L I
Sbjct: 123 RIANYIRRDIFEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVI--DYQNVHEILMNLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+ G+GK ++ ++ D GI T +++ K L +F + + G+ +
Sbjct: 181 GEFPGVGKASKKVMHDN-GIFTGQDLYDKDEFELIRLFGKRGRGLY-NKARGIDNNEVKA 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +ERTFS V +D +L RK+ E++ + + K G+T+T+K+KT +E
Sbjct: 239 TRVRKSVGTERTFSTDVNDDDEIL-RKVWELSGKTAERLNKLQKSGKTVTVKIKTFKYET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNEDKVR 446
++ +L+ + S DI A L + V +RLIG+ V + R
Sbjct: 298 LSKQTSLRDSVQSENDIYNIAYTLYSDLKDPDVPIRLIGVTVGNLEQSSYR 348
>gi|440288953|ref|YP_007341718.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Enterobacteriaceae bacterium strain FGI 57]
gi|440048475|gb|AGB79533.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Enterobacteriaceae bacterium strain FGI 57]
Length = 351
Score = 189 bits (480), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 134/353 (37%), Positives = 192/353 (54%), Gaps = 30/353 (8%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +HVDMD F+AAVE NP+L+ P+A+G +I TANY AR+FGVR+AMP +
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP L +P F Y S+ R++F +Y SLDEAYLD+++ G S
Sbjct: 62 ALKLCPHLTLLPGRFDAYKEASEHIREIFSRYTSLIEPLSLDEAYLDVSDSVHCHG-SAT 120
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 279
IA+E+R +++ E LT SAG+AP + LAK+ SD+NKPNGQFVL P D V F+ +LP
Sbjct: 121 LIAQEIRQTIFNELQLTASAGIAPVKFLAKIASDLNKPNGQFVLTPAD---VPAFLKTLP 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLGLGSTN 336
+ KI G+GKV+ L + G+ TCE++ QK L A+ F G+
Sbjct: 178 LEKIPGVGKVSAAKL-ESMGLKTCEDV-QKSDL--AMLLKRFGKFGRILWERSQGIDERA 233
Query: 337 TPQARFRKSISSERTFSVTED-------KALLYRKLAEIAEMLSADMQKEGLRGRTLTLK 389
R RKSI ERT + ED +A++ R E+ LS ++ + L R +K
Sbjct: 234 INNERLRKSIGVERTLA--EDIHDWSACEAIIERLYPELERRLS-KVKPDLLIARQ-GVK 289
Query: 390 LKTASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFN 441
LK F++ T+ + + ED++ A + +RL+GL VT +
Sbjct: 290 LKFNDFQLTTQEHVWPRL--NKEDLIATAYKTWHERRAGRGVRLVGLHVTLLD 340
>gi|430840671|ref|ZP_19458594.1| DNA polymerase IV [Enterococcus faecium E1007]
gi|431741951|ref|ZP_19530850.1| DNA polymerase IV [Enterococcus faecium E2039]
gi|430494877|gb|ELA71095.1| DNA polymerase IV [Enterococcus faecium E1007]
gi|430600799|gb|ELB38426.1| DNA polymerase IV [Enterococcus faecium E2039]
Length = 373
Score = 189 bits (480), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 126/368 (34%), Positives = 194/368 (52%), Gaps = 36/368 (9%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A VE +P +G P+ + G ++ TANYEA
Sbjct: 4 LQFPLHNDTSRKIIHIDMDAFFACVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 63
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF Y S+DEAYLD
Sbjct: 64 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYLD 123
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 124 VTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 179
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINT------CEEMLQKGSLLCAVF 317
P D + F+ +LPI K G+GK T + ++ GI T C EM+ L F
Sbjct: 180 APQD---AVPFLKALPIEKFHGVGKKTVPRMHEL-GIYTGKDLYECTEMM-----LIRNF 230
Query: 318 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSAD 375
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE +
Sbjct: 231 GKMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEA 288
Query: 376 MQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLI 433
+++ G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+
Sbjct: 289 LRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLL 348
Query: 434 GLRVTQFN 441
G+ +T +
Sbjct: 349 GITLTNLD 356
>gi|357237453|ref|ZP_09124794.1| DNA polymerase IV [Streptococcus ictaluri 707-05]
gi|356753643|gb|EHI70746.1| DNA polymerase IV [Streptococcus ictaluri 707-05]
Length = 365
Score = 189 bits (480), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 203/361 (56%), Gaps = 42/361 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ + G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPNLKGKPVVIAKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
A+ A + CP+ +F+ ++ KY R++F +Y S+DEAYLD+T+ +
Sbjct: 69 AISSKEAYERCPQAVFISGNYHKYKEIGYQIREIFKRYTDQVEPMSIDEAYLDVTQ--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
G+ S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G +LP D +
Sbjct: 127 LGLKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDYQKPHGLTLILPED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLG 331
TF+ LPI K G+GK + + EEM + G+ L AV + D F G
Sbjct: 184 TFLKELPIAKFHGVGKKS---------VIKLEEMGIFTGADLLAVPEMTLIDHFGRFGFD 234
Query: 332 L-----GSTNTP--QARFRKSISSERTFS--VTED---KALLYRKLAEIAEMLSADMQKE 379
L G +N+P R RKSI SERT+ + E+ KA + + + ++E+L ++ +
Sbjct: 235 LYRKARGISNSPVKANRIRKSIGSERTYGKLLYEEKDVKAEISKNASRLSELLKSNQKS- 293
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRV 437
G+TL LK++ A F T+ ++L++ I+ I + A + + E +RL+GL +
Sbjct: 294 ---GKTLVLKVRYADFITLTKRISLEEAINDFTTIEQVAHQIYDSLEESEAGIRLLGLTM 350
Query: 438 T 438
T
Sbjct: 351 T 351
>gi|300727423|ref|ZP_07060832.1| DNA polymerase IV [Prevotella bryantii B14]
gi|299775303|gb|EFI71902.1| DNA polymerase IV [Prevotella bryantii B14]
Length = 363
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 122/356 (34%), Positives = 193/356 (54%), Gaps = 27/356 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE +P GKP+AVG ++ TA+YEAR++GV +AM +A
Sbjct: 4 RKIIHIDMDAFFASVEQRDHPEWSGKPLAVGRDGDRGVVSTASYEARKYGVHSAMSIQMA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP LI + + Y S ++F Y S+DEA+LD+T V ++ ++
Sbjct: 64 KRLCPNLIIAASHHSYYAKISHQIHEIFQDYTDKIEPISIDEAFLDVT-VNKKGSDLAVD 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IA+E++ ++E LT SAG++ N+ LAK+ SD KP+G FV+ D+ + FI+ LPI
Sbjct: 123 IAKEIKQRIFETVHLTASAGISYNKFLAKIASDYRKPDGLFVIHPDK--ALDFIAQLPIE 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
K G+G T + V N + + L +F S F+ + G+
Sbjct: 181 KFWGVGPKTALRMHHVGIFNGLQLRQCSVNHLKELFGKSGPVFY-NFARGIDERPVISEH 239
Query: 342 FRKSISSERTFSVTEDKAL-------LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
RKS+ E+TF ED ++ LY + E+ E L +K+ RG+TLTLK+K
Sbjct: 240 VRKSVGCEQTF--LEDISIRSSVIIALYHIVLELVERL----KKDDFRGKTLTLKIKYGD 293
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLK-----AELPVSLRLIGLRVTQFNEDKV 445
F +++++T QKY+ + IL A LL A P+ RL+GL V+ +E+ +
Sbjct: 294 FTQKSKSITQQKYLREKDTILPLAKQLLTQFRFDANHPI--RLMGLSVSNPHEEVI 347
>gi|388457043|ref|ZP_10139338.1| ImpB/MucB/SamB family protein [Fluoribacter dumoffii Tex-KL]
Length = 355
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 190/349 (54%), Gaps = 28/349 (8%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPG 158
+SR +H+DMD FYAA+E NP L KP+AVG ++ ++CT NY AR++GV +AMP
Sbjct: 1 MSRKIIHIDMDCFYAAIEIRDNPLLNNKPVAVGGLANQRGVLCTCNYIARQYGVHSAMPT 60
Query: 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS 218
+A++LCP+LI +P + KY S +F ++ SLDEA+LD+T +G S
Sbjct: 61 AVAQRLCPDLIVLPVNMPKYKEVSQSINSIFRQFTDLVEPLSLDEAFLDVTHSSHCQG-S 119
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSL 278
IA+ LR ++ ++ LT SAGVAPN+ LAK+ S NKPNG FV+ + V FI +L
Sbjct: 120 ATYIAQALRETIVKQHQLTASAGVAPNKFLAKIASAWNKPNGLFVITPEH--VEQFIKTL 177
Query: 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTN 336
P+ K+ G+GKVT L + I TC + LQ+ L L F F G+ +
Sbjct: 178 PVNKLFGVGKVTASKLNQL-NIFTCND-LQEYPLEFLIKHFGKMGQQLFYQ-ARGIDNRP 234
Query: 337 TPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEG----LRGRTLTLKL- 390
R RKS+S E+TF D R ++E+ + L +++ ++ + + +K+
Sbjct: 235 VQPNRLRKSLSVEKTFQYDIHDPQKAMRVISELYQSLIVRIKENAADLLIKNQFIKIKMS 294
Query: 391 --KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 437
K S E+++ + L++Y + I+ H S +RL+G+ V
Sbjct: 295 DFKLVSAEIKSTQINLERYNELFKKIIPHES--------KPIRLLGIGV 335
>gi|255021890|ref|ZP_05293900.1| DNA polymerase IV [Acidithiobacillus caldus ATCC 51756]
gi|254968714|gb|EET26266.1| DNA polymerase IV [Acidithiobacillus caldus ATCC 51756]
Length = 390
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 178/338 (52%), Gaps = 11/338 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +HVDMDAF+AAVE P L+G P+ VG ++ T +YEARRFG+R+AM
Sbjct: 29 RKIIHVDMDAFFAAVEQRDRPELRGLPVIVGGDPNVRGVVATCSYEARRFGIRSAMSAAR 88
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
AR LCP+ IFV Y S + Y SLDEA+LD+T + G +
Sbjct: 89 ARSLCPQAIFVRPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFLDVTAATTD-GTLAV 147
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
EIA E+ ++ E GLT SAGV+ N+LLAK+ SD KP+G FV+P +R + F++ LP+
Sbjct: 148 EIAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPHGLFVIPPERG--LAFLAPLPV 205
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
K+ G+G T L G+ T ++ + +F V + +
Sbjct: 206 GKLHGVGPATVKKL-SAMGVETVLDLRNLSLEFLVTHFGKSGGWFYDVARAIDERPVQPS 264
Query: 341 RFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +ERTFS D++++ L E+A ++A +Q L G T+ +K + F T
Sbjct: 265 RQRKSVGTERTFSKNLADRSVMLTTLQEMAAQVAARLQVLHLAGHTVHIKARFPDFTTVT 324
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGL 435
RA T + I S++ I LL +P S+RL+G+
Sbjct: 325 RAYTATEGIGSADAIAAWLPELLDRAVPKSTSVRLLGI 362
>gi|419800093|ref|ZP_14325402.1| DNA polymerase IV [Streptococcus parasanguinis F0449]
gi|385696319|gb|EIG26815.1| DNA polymerase IV [Streptococcus parasanguinis F0449]
Length = 368
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 132/362 (36%), Positives = 193/362 (53%), Gaps = 40/362 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NPSLKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPSLKGKPVVIGQDPRQSGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A LCP+ IF+ ++ KY + R +F +Y S+DEAYLD+TE +
Sbjct: 69 AMSSKEALGLCPQAIFISGNYEKYREVGEQVRDIFKRYTDLIEPMSIDEAYLDVTE-NKI 127
Query: 215 RGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMT 273
+ S ++IA ++ +++EE LT SAGV+ N+ LAK+ SD KP G VLP D
Sbjct: 128 QSKSAVKIARLIQHAIWEELHLTASAGVSYNKFLAKMASDYQKPRGLTVVLPED---AED 184
Query: 274 FISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL- 332
F+S + I K G+GK T L ++ G+ T G+ L A+ + D F G L
Sbjct: 185 FLSQMDIAKFHGVGKKTVERLHEM-GVYT-------GADLLAIPEMTLIDRFGRFGYDLF 236
Query: 333 ----GSTNTP--QARFRKSISSERTFSVTEDKALLYRK---LAEIAEMLSADMQ---KEG 380
G N+P R RKSI ERT+ + LLY + L EIA + S Q K G
Sbjct: 237 RKARGIHNSPVKSHRIRKSIGKERTY-----RKLLYAEDDILEEIANLSSKVAQSLVKHG 291
Query: 381 LRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVT 438
+G+TL LK++ F T+ +TL + +E I + A + + +RL+G+ +T
Sbjct: 292 KQGKTLVLKVRYGDFTTLTKRITLTEPTREAERINRSARHIFQEIESTNTGIRLLGVTMT 351
Query: 439 QF 440
F
Sbjct: 352 NF 353
>gi|333378665|ref|ZP_08470395.1| hypothetical protein HMPREF9456_01990 [Dysgonomonas mossii DSM
22836]
gi|332883069|gb|EGK03353.1| hypothetical protein HMPREF9456_01990 [Dysgonomonas mossii DSM
22836]
Length = 353
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 181/338 (53%), Gaps = 23/338 (6%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAFYA++E P +GKP+AVG ++ A+YEARR+GVR+AM A + CP L
Sbjct: 1 MDAFYASIEQRDYPEYRGKPLAVGYAGPRGVVAAASYEARRYGVRSAMASKTALRKCPHL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFVP F Y S ++F +Y SLDEA+LD+TE S +IA+E++
Sbjct: 61 IFVPARFDVYKSVSRQIMEIFHEYTDLVEPLSLDEAFLDVTENNMNIA-SATQIAQEIKQ 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGK 288
+ E LT SAGV+ N+ LAK+ SD NKPNG FV+ F+ SL I + G+GK
Sbjct: 120 KIREATNLTASAGVSFNKFLAKIASDQNKPNGLFVVKPK--VAEQFVESLAIERFFGVGK 177
Query: 289 VTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSIS 347
VT ++ + GI T ++ Q+ + L +VF + ++ + + R RKSIS
Sbjct: 178 VTAKVMHQM-GIKTGWDLKQRSENELVSVFGKAGHIYYQN-ARAIDYRPVESQRIRKSIS 235
Query: 348 SERTFSVTEDKALLYRKLAEIAEMLSA-------DMQKEGLRGRTLTLKLKTASFEVRTR 400
SE TF D L E+A L A +QK+ +GRT+TLK+K A F++ TR
Sbjct: 236 SETTFDRDID------SLDELAVELDAVARDTFDYLQKKKFKGRTVTLKIKYADFKIITR 289
Query: 401 AVTLQKYISSSEDILKHASVLLK-AELPVSLRLIGLRV 437
+ T + E K LLK +L +RLIGL V
Sbjct: 290 SRTFADAVEDYELFYKAGFELLKLVDLSPKVRLIGLGV 327
>gi|157147182|ref|YP_001454501.1| DNA polymerase IV [Citrobacter koseri ATCC BAA-895]
gi|189027658|sp|A8AKQ2.1|DPO4_CITK8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|157084387|gb|ABV14065.1| hypothetical protein CKO_02960 [Citrobacter koseri ATCC BAA-895]
Length = 351
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 133/351 (37%), Positives = 191/351 (54%), Gaps = 26/351 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +HVDMD FYAAVE NP+L+ P+A+G +I TANY AR+FGVR+AMP +
Sbjct: 2 RKIIHVDMDCFYAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP L +P F Y S R++F +Y SLDEAYLD+T+ G S
Sbjct: 62 ALKLCPHLTLLPGRFEAYKEASQHIREIFSRYTSRIEPLSLDEAYLDVTDSTYCHG-SAT 120
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 279
IA+E+R +++ E LT SAG+AP + LAK+ SD+NKPNGQ+V+ P D V F+ +LP
Sbjct: 121 LIAQEIRQTIFNELQLTASAGIAPVKFLAKIASDLNKPNGQYVITPAD---VPEFLKTLP 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF---FLSVGLGLGSTN 336
+ KI G+GKV+ L + G+ TCE++ QK L A+ F G+ +
Sbjct: 178 LGKIPGVGKVSAARL-ETMGLRTCEDV-QKYDL--AMLLKRFGKFGRVLWERSQGIDERD 233
Query: 337 TPQARFRKSISSERTFS-----VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
R RKSI ERT + E +A++ R E+ L A ++ + L R +KLK
Sbjct: 234 VNNERLRKSIGVERTLAEDIHEWAECEAIIERLYPELERRL-AKVKPDLLIARQ-GVKLK 291
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFN 441
F++ T+ + S +D++ A + +RL+GL VT +
Sbjct: 292 FNDFQLTTQEHVWPRL--SKDDLITTARKTWNERRGGRGVRLVGLHVTLLD 340
>gi|198283550|ref|YP_002219871.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198248071|gb|ACH83664.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 374
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 129/344 (37%), Positives = 186/344 (54%), Gaps = 17/344 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +HVDMDAF+AAVE P L+G+P+ VG ++ T +YEARRFG+ +AM
Sbjct: 13 RKIIHVDMDAFFAAVEQRDYPELRGQPVIVGGDPAGRGVVATCSYEARRFGIHSAMTAAR 72
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
AR LCP+ IFV Y S + Y P SLDEA+LD+T + GI +
Sbjct: 73 ARSLCPQAIFVRPRMEAYREASRQVMAILRSYTPLVEPLSLDEAFLDVTAATAD-GILAV 131
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
EIA E+ ++ E LT SAGV+ N+LLAK+ SD KP G FV+P R + F++ LP+
Sbjct: 132 EIAREILDRIHRETRLTASAGVSYNKLLAKLASDWRKPQGLFVIPPKRG--LDFLAPLPV 189
Query: 281 RKIGGIGKVTEHILRDVFGINTCEE---MLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
K+ G+G T L GI+T + M Q+ + C F + A +F V G+
Sbjct: 190 GKLHGVGPATVKKL-SAMGIDTVSDLRAMAQERLIRC--FGKAGA-WFYEVARGIDRRPV 245
Query: 338 PQARFRKSISSERTFSVT-EDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R RKS+ +ERTFS ED+ + L ++AE ++A +Q L G T+ +K + F
Sbjct: 246 QPTRQRKSVGTERTFSENLEDRGTMLATLQQMAEQVAARLQALALAGYTVNIKARFPDFA 305
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELP--VSLRLIGLRVT 438
TRA T + ++E I + LL +P S+RL+G+ V+
Sbjct: 306 TVTRAHTATEVTGNTEAIAALLTELLDRAVPQGASVRLLGITVS 349
>gi|373456049|ref|ZP_09547856.1| hypothetical protein HMPREF9453_02025 [Dialister succinatiphilus
YIT 11850]
gi|371934252|gb|EHO62054.1| hypothetical protein HMPREF9453_02025 [Dialister succinatiphilus
YIT 11850]
Length = 385
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 118/343 (34%), Positives = 186/343 (54%), Gaps = 10/343 (2%)
Query: 105 RSW-LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFI 160
R W +HVDMDAF+A+VE +P KGKP+ VG S ++ TA+YEAR++GV +AMP
Sbjct: 2 RRWIMHVDMDAFFASVEQRDHPEWKGKPVIVGGRSRRGVVATASYEARKYGVHSAMPVSK 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
AR+LCP IF F Y S ++ Y + SLDEA+LDI+ + + G
Sbjct: 62 ARELCPFGIFAEPRFQVYKETSHRIHEIMLHYAEAYEPISLDEAFLDISAMGSQYPTLG- 120
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
I ++ + +E L S G+APN+ LAK+ SD++KP+G F++P + + LP+
Sbjct: 121 AIGRAIKKEILKETELVASVGIAPNKFLAKMASDMDKPDGLFIIPYGKEK--DILRPLPV 178
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
R++ G+GKVTE L G T ++ A + + G+
Sbjct: 179 RRLWGVGKVTEGRLVKA-GFRTIGDIQDVSVEALASVLGNQGGLLKRLSFGVDDRPVEAE 237
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R KSI E T+ D +++ R++A +++++ ++K+GL RT+TLK++ ASF T
Sbjct: 238 REIKSIGDESTYEKDITDPSVIDREIAIHSDIVAQRLRKQGLMARTVTLKIRFASFRTVT 297
Query: 400 RAVTLQKYISSSEDILKHASVLL-KAELPVSLRLIGLRVTQFN 441
R ++ ++ S E+I HA LL K L +RLIG+ ++
Sbjct: 298 RTLSFEEGTSLQEEIYHHAMTLLQKIPLTEGVRLIGVTASRLG 340
>gi|299771913|ref|YP_003733939.1| DNA polymerase IV [Acinetobacter oleivorans DR1]
gi|298702001|gb|ADI92566.1| DNA polymerase IV [Acinetobacter oleivorans DR1]
Length = 351
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 121/345 (35%), Positives = 188/345 (54%), Gaps = 14/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LK P+ + + ++I A+Y AR FG+R+AM A
Sbjct: 2 RKIIHIDMDAFYASVELRERPDLKHLPVVISSHHPRAVIAAASYPAREFGLRSAMSMSQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S E
Sbjct: 62 RKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVTENLKQIA-SATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+ ++A +FI LP++
Sbjct: 121 VAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVA--SFIQDLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G+GKVT+ L+ + ++T + LQK ++L F +L G+
Sbjct: 179 KIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAILVHHFGKYGQQLYLYAQ-GIDHRPVQA 235
Query: 340 ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R R+ IS E TF +AE + ++K+ L R + +KLK +F+
Sbjct: 236 ERARQQISKETTFDSDFTLVQCQPYWQGLAEKVWQSLEKKQLNARGVNIKLKLKNFQTLQ 295
Query: 400 RAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 441
+ + ++ I S +D+++ +LL + ++P RLIG+ V Q
Sbjct: 296 HSKSFKRPIQSLQDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|257434028|ref|ZP_05610379.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257280954|gb|EEV11098.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
E1410]
Length = 356
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 122/347 (35%), Positives = 190/347 (54%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYRNVHDILMTLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI ++ +K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R RKS+ +E TF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 TRVRKSVGTEHTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>gi|425054472|ref|ZP_18457978.1| putative DNA polymerase IV [Enterococcus faecium 505]
gi|403035786|gb|EJY47169.1| putative DNA polymerase IV [Enterococcus faecium 505]
Length = 373
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 126/367 (34%), Positives = 193/367 (52%), Gaps = 34/367 (9%)
Query: 95 LELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYEA 147
L+ D SR +H+DMDAF+A+VE +P +G P+ + G ++ TANYEA
Sbjct: 4 LQFPLHNDTSRKIIHIDMDAFFASVEERDHPEFRGHPLVIARHPSDTGGRGVVTTANYEA 63
Query: 148 RRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLD 207
R+FG+ +AM A +LCP+ IF P D KY+ S R+VF Y S+DEAYLD
Sbjct: 64 RKFGIHSAMSAQKAYELCPQAIFKPGDHHKYSEISKQVREVFYHYTDIVEPVSIDEAYLD 123
Query: 208 ITEV---CRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFV 263
+TE C+ S I+IA ++ ++E LTCSAGV+ N+ LAK+ SD KP G V
Sbjct: 124 VTENKINCK----SAIKIARMIQADIWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVV 179
Query: 264 LPNDRMAVMTFISSLPIRKIGGIGKVT---EHILRDVFG--INTCEEMLQKGSLLCAVFS 318
P D + F+ +LPI K G+GK T H L G + C EM+ L F
Sbjct: 180 APQD---AVPFLKALPIEKFHGVGKKTVPRMHELGIYIGKDLYECTEMM-----LIRNFG 231
Query: 319 HSTADFFLSVGLGLGSTNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADM 376
+ V G+ + R RKS+ E T+ + ++A+L +L ++AE + +
Sbjct: 232 KMGYSLYRKVR-GIHDSPVNVTRERKSVGKEHTYGQPLQTEEAVL-AQLRQLAEKVEEAL 289
Query: 377 QKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIG 434
++ G+T+ LK++ + T+ VTL +YI E + AS++ + L V +RL+G
Sbjct: 290 RRVQKHGKTVVLKVRYTDYSTVTKRVTLPEYIYKKEALFYQASLIWEEILGVEKGIRLLG 349
Query: 435 LRVTQFN 441
+ +T +
Sbjct: 350 ITLTNLD 356
>gi|294790483|ref|ZP_06755641.1| DNA polymerase IV (Pol IV) [Scardovia inopinata F0304]
gi|294458380|gb|EFG26733.1| DNA polymerase IV (Pol IV) [Scardovia inopinata F0304]
Length = 463
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 190/349 (54%), Gaps = 29/349 (8%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGT--MSMICTANYEARRFGVRAAMPGFIARKLC 165
LH+DMDAFYA+ E + +P L+GKP+ +GT +++ A+YEAR+FGV +AMP A +LC
Sbjct: 24 LHIDMDAFYASCEIVRHPELRGKPVIIGTGHRAVVSAASYEARKFGVNSAMPAATAHRLC 83
Query: 166 PELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEE 225
P+ IF+P D Y S ++F + S+DE Y+D++ + +I
Sbjct: 84 PQGIFLPVDMAYYRSMSHQVFEIFHQITDQIEPVSVDECYMDVSGALLQWK-DPRKIGAW 142
Query: 226 LRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGG 285
+R +V+++ G+TCS G+A N+L+AK+ S KPNG ++P R A FI +P+R I G
Sbjct: 143 IRQTVHDQIGVTCSVGIASNKLIAKLASTNAKPNGMLLIPLARQA--EFIQMMPVRSIPG 200
Query: 286 IGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR 343
+G TE IL + +GI T +++ + L A+ S + A G GS +
Sbjct: 201 VGPSTEKILTN-WGITTVKQLSAMSLSDLTAALHSPAQARHLYQASHGWGSPKVVTSASD 259
Query: 344 KSISSERTF-----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
KSI +ERTF S + ALL R ++A L + L RT+T+KL+ A+
Sbjct: 260 KSIGAERTFAEDTRSWKQVTALLRRCCDDVATTL----RSRRLYARTVTVKLRLANLSHI 315
Query: 399 TRAVTLQKYISSSEDILKHA----SVLLKAE--------LPVSLRLIGL 435
++++T+Q+ ++S + A + L+K E LP +RL G+
Sbjct: 316 SKSLTVQEPMNSEAQLYPVAKELLARLMKVEQPQAGDLILPAMIRLAGV 364
>gi|422019443|ref|ZP_16365991.1| DNA polymerase IV [Providencia alcalifaciens Dmel2]
gi|414103282|gb|EKT64860.1| DNA polymerase IV [Providencia alcalifaciens Dmel2]
Length = 351
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 151/254 (59%), Gaps = 10/254 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+AA+E +PSL+ P+AVG + ++ TANYEARR+GV +AM +
Sbjct: 2 RKIIHIDMDCFFAAIEMRDDPSLRNVPLAVGGRADRRGVLSTANYEARRYGVHSAMSTAL 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP L VP Y S+ R++F +Y SLDEAYLD+T+ C++ S
Sbjct: 62 ALKLCPHLKVVPGRMAVYKDVSNHIRQIFARYTDLIEPLSLDEAYLDVTD-CQQLHGSAT 120
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IAE +R +++E LT SAG+AP + LAK+ SD+NKPNGQFV+ + TF++SLP+
Sbjct: 121 LIAEAIRQQIFDELQLTASAGIAPIKFLAKIASDMNKPNGQFVITPQELP--TFVASLPL 178
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST-ADFFLSVGLGLGSTNTPQ 339
+KI G+GKVT L D+ G+ TC ++ QK +L + S G+
Sbjct: 179 KKIPGVGKVTAQKLADM-GLLTCSDV-QKYDMLALIKSMGKFGQALWERCHGIDERAVNP 236
Query: 340 ARFRKSISSERTFS 353
R RKS+ ERT +
Sbjct: 237 ERLRKSVGVERTLA 250
>gi|366161628|ref|ZP_09461490.1| DNA polymerase IV [Escherichia sp. TW09308]
gi|432371030|ref|ZP_19614094.1| DNA polymerase IV [Escherichia coli KTE11]
gi|430900243|gb|ELC22262.1| DNA polymerase IV [Escherichia coli KTE11]
Length = 351
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 151/259 (58%), Gaps = 20/259 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +HVDMD F+AAVE NP+L+ P+A+G +I TANY AR+FGVR+AMP +
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP L +P F Y S+ R++F +Y SLDEAYLD+T+ G S
Sbjct: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SAT 120
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 279
IA+E+R +++ E LT SAGVAP + LAK+ SD+NKPNGQFV+ P D V F+ +LP
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAD---VPAFLQTLP 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV-----FSHSTADFFLSVGLGLGS 334
+ KI G+GKV+ L + G+ TC + +QK L+ + F H G+
Sbjct: 178 LAKIPGVGKVSAAKL-EAMGLRTCGD-VQKYDLVMLLKRFGKFGH----ILWERSQGIDE 231
Query: 335 TNTPQARFRKSISSERTFS 353
+ R RKS+ ERT +
Sbjct: 232 RDVNSERLRKSVGVERTMA 250
>gi|322391490|ref|ZP_08064959.1| DNA-directed DNA polymerase IV [Streptococcus peroris ATCC 700780]
gi|321145573|gb|EFX40965.1| DNA-directed DNA polymerase IV [Streptococcus peroris ATCC 700780]
Length = 353
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 197/355 (55%), Gaps = 26/355 (7%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
DLSR +H+DMDAF+A+VE NP LKGKP+ +G ++ T +YEAR FG+ +
Sbjct: 9 DLSRKIIHIDMDAFFASVEIRDNPKLKGKPVIIGNDPRKTGGRGVVSTCSYEARSFGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ +F+P ++ KYT S R +F +Y S+DEAYLD+TE +
Sbjct: 69 AMSSKEAYERCPQAVFIPGNYEKYTAVSQQIRAIFKRYTDKIEPMSIDEAYLDVTE--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA ++ +++E LT SAGV+ N+ LAK+ SD KP G ++P+D +
Sbjct: 127 LGIKSAVKIARLIQQDIWQELHLTASAGVSYNKFLAKIASDYQKPCGLTVIMPDD---AV 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLG 331
+F+ + I K G+GK T IL + G+ T ++L+ + L F D + G
Sbjct: 184 SFLQQMDIAKFHGVGKKTVEILHQM-GVFTGADLLEISEITLIDRFGRFGFDLYRK-ARG 241
Query: 332 LGSTNTPQARFRKSISSERTF----SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT 387
+ ++ R RKSI E+T+ S+ ED + ++L ++E ++ +QK G+ +
Sbjct: 242 IDNSPVKSNRIRKSIGKEKTYSKILSLDED---IKKELTLLSEKVALSLQKYEKSGKIVI 298
Query: 388 LKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQF 440
LK++ A F T+ TL + SE+I + L + ++ +RL+G+ VT F
Sbjct: 299 LKIRYADFSTLTKRKTLNQQTQDSEEIAQSIIQLYETLSDKDKGVRLLGVTVTGF 353
>gi|407853256|gb|EKG06322.1| DNA polymerase kappa, putative,DNA polymerase IV, putative, partial
[Trypanosoma cruzi]
Length = 310
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 139/235 (59%), Gaps = 17/235 (7%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAG+ GV+K +V KV+ SKGS ++ NE R EA Q+K HM L+ + +
Sbjct: 83 KAGLSGVNKARVNKVIESCSKGSAFYLNEGRLEA--QRKKRHMEL----LSKSEVYRHLS 136
Query: 89 VADKRIL---------ELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
ADK+ L ELEA R R+++HVDMD FYAAVE NPSL P+ VGT M
Sbjct: 137 AADKQALKDKVEMCEVELEAGRHF-RNYVHVDMDMFYAAVEMKKNPSLVDVPLGVGTFDM 195
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+ T NY ARR+GVR+ MPG+I KLCP L+ VPTDF Y + + R + YDPNF +
Sbjct: 196 LSTTNYVARRYGVRSGMPGYIGVKLCPSLVIVPTDFDAYHAEAAVVRGIAAAYDPNFTSV 255
Query: 200 SLDEAYLDITEVCRER-GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCS 253
LDE +++T ++ G++ ++A E R V+ E LT SAG+ P LAK+ S
Sbjct: 256 GLDELTMEVTAYLQQHPGMTAGDVASEFRARVFAETQLTASAGIGPTATLAKIAS 310
>gi|422810053|ref|ZP_16858464.1| DNA polymerase IV [Listeria monocytogenes FSL J1-208]
gi|378751717|gb|EHY62305.1| DNA polymerase IV [Listeria monocytogenes FSL J1-208]
Length = 356
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 128/351 (36%), Positives = 190/351 (54%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR++GV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVSTCSYEARKYGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSSQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A +++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATMVARDIQQTIYRELGLTASAGVSFNKFIAKIASDFKKPAGITVVAPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYQLYRQVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L A+ + + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDNRILEQSLMNFAKKVEERLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + S I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDSNQIYQAAALLLRESYKGQDSIRLIGLTVTNL 343
>gi|255100011|ref|ZP_05328988.1| DNA polymerase IV [Clostridium difficile QCD-63q42]
gi|255305898|ref|ZP_05350070.1| DNA polymerase IV [Clostridium difficile ATCC 43255]
gi|423090257|ref|ZP_17078565.1| putative DNA polymerase IV [Clostridium difficile 70-100-2010]
gi|357556932|gb|EHJ38503.1| putative DNA polymerase IV [Clostridium difficile 70-100-2010]
Length = 365
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 193/355 (54%), Gaps = 26/355 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMDAFYA++E N LKG+P+ VG + ++ T +YEAR+FG+ +AMP +
Sbjct: 5 RKIIHIDMDAFYASIEQRDNKKLKGRPVIVGGNPQSRGVVATCSYEARKFGIHSAMPSAV 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 219
A CP +FV F Y S+ R +F +Y SLDEAYLD+T+ ++ I S
Sbjct: 65 AYNRCPYAVFVRPRFDVYKSVSEQIRDIFYRYTDLVEPLSLDEAYLDVTK--NKKNIDSS 122
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KPNG V+ + F+ LP
Sbjct: 123 IEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEEN--AQDFLDKLP 180
Query: 280 IRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
+ K G+GKVT + L+++ GI T C + + L +F + + G+
Sbjct: 181 VNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----LENIFKKRGYELY-KFARGIDD 234
Query: 335 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
R RKS+ +E T S + D+ L E+ E + ++ G+TLTLK+K
Sbjct: 235 RPVEPNRVRKSVGAETTLSHNLDIDEEETRNILDELCEEVCHRLKNSEKFGKTLTLKIKY 294
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRVTQFNEDK 444
F TR+++L+ YI DI LL+ + V+ +RL+G+ ++ ++ K
Sbjct: 295 EDFTKITRSLSLEHYIDEYNDIRSGVDNLLR-NVEVNGKQIRLLGVTISNLSDKK 348
>gi|402487090|ref|ZP_10833915.1| DNA polymerase IV [Rhizobium sp. CCGE 510]
gi|401813920|gb|EJT06257.1| DNA polymerase IV [Rhizobium sp. CCGE 510]
Length = 363
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 173/317 (54%), Gaps = 10/317 (3%)
Query: 99 ATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAA 155
A + R +HVDMDAFYA+VE NP L+G P+AVG+ + ++ A+YEARRFGV +A
Sbjct: 5 AASERPRKIVHVDMDAFYASVEQRDNPELRGLPVAVGSPAARGVVAAASYEARRFGVHSA 64
Query: 156 MPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER 215
MP A++ CP LIFV F Y S R +F +Y P SLDEAYLD+TE +
Sbjct: 65 MPSVTAQRKCPGLIFVKPRFDVYKAVSLQIRAIFAEYTPMIEPLSLDEAYLDVTENLKGM 124
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTF 274
I+ EIA+E+R + GLT SAG++ N+ LAK+ S NKPNGQFV+ P + A F
Sbjct: 125 EIA-TEIADEIRAKIKATTGLTASAGISYNKFLAKMASGENKPNGQFVITPKNGPA---F 180
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
+ LP++K G+G T + + GI T ++ + + +F + GL +
Sbjct: 181 VERLPVKKFHGVGPATAEKMHRL-GIETGADLRRMTLEFLVEHFGKSGPYFHGIARGLDN 239
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRK-LAEIAEMLSADMQKEGLRGRTLTLKLKTA 393
R RKS+ +E TFS R+ L + E + + + G+T+TLK+K A
Sbjct: 240 RQVRPDRVRKSVGAEDTFSKDIHAYEPAREGLQPLIEKVWDYCEANEIGGKTVTLKVKYA 299
Query: 394 SFEVRTRAVTLQKYISS 410
F TR+ T+ + S
Sbjct: 300 DFSQITRSKTVTAPLPS 316
>gi|322515202|ref|ZP_08068201.1| DNA-directed DNA polymerase IV [Actinobacillus ureae ATCC 25976]
gi|322118812|gb|EFX91013.1| DNA-directed DNA polymerase IV [Actinobacillus ureae ATCC 25976]
Length = 356
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 124/352 (35%), Positives = 187/352 (53%), Gaps = 34/352 (9%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD FYAA+E NP+L GKP+AVG ++ T NYEAR+FG+ +AMP
Sbjct: 5 RKIIHIDMDCFYAAIEMRENPALIGKPVAVGGSVEGRGVLTTCNYEARKFGLHSAMPTAQ 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A K CP LI VP + Y S+ ++F +Y SLDEAYLD+T+ C++ S
Sbjct: 65 ALKRCPNLILVPVNMPLYKTVSEQIHQIFRRYTDIIEPLSLDEAYLDVTD-CQQCSGSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+E+R +++ E LT SAG+AP + LAK+ SD NKPNGQFV+ + M FI LP+
Sbjct: 124 WIAQEIRAAIWHELHLTASAGIAPLKFLAKIASDQNKPNGQFVISPENMT--AFIYDLPL 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC----AVFSHSTADFFLSVGLGLGSTN 336
+KI G+GKVT L + G++TC ++ F DF ++ N
Sbjct: 182 KKIPGVGKVTNEKLAQL-GLHTCGDIQHSDKAFIYKTFGKFGQRLWDFSHAIDNRKIEVN 240
Query: 337 TPQARFRKSISSERT-----FSVTEDKALLYRKLAEIAEMLSADMQKEGLRG-RTLTLKL 390
P RKS++ E T + ++E + ++ ++ L + K L+ + L +KL
Sbjct: 241 RP----RKSLAVENTLPTDIWHLSEAEQIVDELFKKLVFRLQRNWGKRSLQEFKKLAIKL 296
Query: 391 KTASF-----EVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 437
K F E T ++L+++I + + + + S+RLIGL V
Sbjct: 297 KFGDFTQTTLERTTDGLSLERFIELLQQVWQRTN-------HRSVRLIGLSV 341
>gi|317504724|ref|ZP_07962685.1| NAD(+) kinase [Prevotella salivae DSM 15606]
gi|315664162|gb|EFV03868.1| NAD(+) kinase [Prevotella salivae DSM 15606]
Length = 372
Score = 188 bits (478), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 195/346 (56%), Gaps = 21/346 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAF+A+VE +P L+GKP+AVG ++ TA+YEAR+FGV +AM +A
Sbjct: 2 RKIIHIDMDAFFASVEQRDHPELRGKPIAVGYDGARGVVSTASYEARKFGVHSAMSVQMA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
++LC ELI V + Y S ++F Y SLDEA+LD+T ++GI +
Sbjct: 62 KRLCKELIIVEGSYQHYKEVSAQIHRIFHDYTELIEPISLDEAFLDVT--TNKKGIPLAV 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+E++ + +E LT SAG++ N+LLAK+ SD KP+G + D+ M F++ LP+
Sbjct: 120 DIAKEIKQRIKDELNLTASAGISYNKLLAKIASDYRKPDGICTIHPDK--AMDFVAKLPV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL--LCAVFSHSTADFFLSVGLGLGSTNTP 338
+ G+G T + + N + L+ SL L VF + F+ + G+
Sbjct: 178 EDLWGVGPKTALRMHRMGIFNALQ--LRACSLEHLTMVFGKAGPSFY-NYARGIDERPVI 234
Query: 339 QARFRKSISSERTFSVTEDKALLYRKLAEIAEM---LSADMQKEGLRGRTLTLKLKTASF 395
R RKS+ E TF ED +L L E+ + LSA ++K G+TLTLK+K A F
Sbjct: 235 TKRTRKSVGCEHTF--LEDISLPSALLIELYHLVVELSARIKKGNFEGKTLTLKIKYADF 292
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGLRVT 438
+ TR++T K + + ++IL A LL+ + ++RL+GL V+
Sbjct: 293 KQITRSITSHKLLKTKDEILPLAKRLLQMISYDNAHAIRLMGLSVS 338
>gi|422419592|ref|ZP_16496547.1| DNA polymerase IV [Listeria seeligeri FSL N1-067]
gi|422422684|ref|ZP_16499637.1| DNA polymerase IV [Listeria seeligeri FSL S4-171]
gi|313632573|gb|EFR99570.1| DNA polymerase IV [Listeria seeligeri FSL N1-067]
gi|313637119|gb|EFS02663.1| DNA polymerase IV [Listeria seeligeri FSL S4-171]
Length = 356
Score = 188 bits (478), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 127/349 (36%), Positives = 191/349 (54%), Gaps = 17/349 (4%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVSTCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAVKLCPNGIFIHGNMAHYVEVSGQIREIFSRYTDLIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFI 275
S IA +++ ++Y E GLT SAGV+ N+ +AK+ SD +KP G V+ P + A F+
Sbjct: 120 KSATLIARDIQQTIYRELGLTASAGVSFNKFIAKIASDYHKPAGITVVSPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
+P+ K G+GKVT L + GI + L+K S + + L + S
Sbjct: 177 ERIPVTKFYGVGKVTAEKLHRL-GIENGAD-LKKWSEWDLIRELHKQGYHLYRHVRGRSN 234
Query: 336 NTPQA-RFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA 393
N R RKS+ E TF D+ +L + L A+ + + K G+T+ LKL+ +
Sbjct: 235 NVVNPHRDRKSVGKETTFEFNVLDERILEQNLMIFAKKVEERLTKLQKHGKTVVLKLRYS 294
Query: 394 SFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
F T+ +TL +YI ++ I + A++LL+ S+RLIGL VT
Sbjct: 295 DFTTITKRLTLNEYIHDAQQIYQAAALLLRESYTGKESIRLIGLTVTNL 343
>gi|418636789|ref|ZP_13199128.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
gi|374840485|gb|EHS03978.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
Length = 359
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 191/343 (55%), Gaps = 17/343 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP L+GKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIVHIDMDFFFAQVEMRDNPKLRGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP+ +V + KY S+ +F Y SLDEAYLDIT + R +
Sbjct: 64 AHKLCPDGYYVQGQYEKYRTISNEIMSIFRSYTEAVEPMSLDEAYLDITHLVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPNG V+ D V + +L I
Sbjct: 123 QIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVI--DYENVHKILMALDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK +E I+ GI +++ QK L +F + + G+ +
Sbjct: 181 GDFPGVGKASEKIMHK-HGIYNGQDLYQKDVFELVRLFGKRGRGLY-NKARGIDDSPVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ V +D +L +K+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRIRKSVGTERTFATDVNDDDEIL-QKMWELSGKTAERLNKLQKSAKTVTVKIKTFKFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLIGLRV 437
++ ++L+ I S DI + + +L AEL + +RLIG+ V
Sbjct: 298 LSKQMSLRDPIRSETDIY-NIAYMLYAELKDPEMPIRLIGVTV 339
>gi|306834307|ref|ZP_07467424.1| DNA-directed DNA polymerase IV [Streptococcus bovis ATCC 700338]
gi|336065017|ref|YP_004559876.1| DNA polymerase IV [Streptococcus pasteurianus ATCC 43144]
gi|304423480|gb|EFM26629.1| DNA-directed DNA polymerase IV [Streptococcus bovis ATCC 700338]
gi|334283217|dbj|BAK30790.1| DNA polymerase IV [Streptococcus pasteurianus ATCC 43144]
Length = 381
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 124/371 (33%), Positives = 200/371 (53%), Gaps = 30/371 (8%)
Query: 91 DKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTA 143
D+ +L D SR +H+DMDAF+A+VE NP LKGKP+ +G+ ++ T
Sbjct: 14 DRLMLIFPLINDTSRKIIHIDMDAFFASVEERDNPDLKGKPVIIGSDPRKTGGRGVVSTC 73
Query: 144 NYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDE 203
NYEAR+FGV +AM A + CP+ +F+ ++ KY R++F +Y S+DE
Sbjct: 74 NYEARKFGVHSAMSSKEAYERCPQAVFISGNYQKYRKVGMQIREIFKRYTDLVEPMSIDE 133
Query: 204 AYLDITEVCRERGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-Q 261
AYLD+TE + GI S ++IA+ ++ +++E LTCSAGV+ N+ LAK+ SD KP G
Sbjct: 134 AYLDVTE--NKLGIKSALKIAKMIQYDIWQEVHLTCSAGVSYNKFLAKLASDFEKPKGLT 191
Query: 262 FVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHS 320
+LP D F+ LPI K G+GK + L + G+ T ++L+ + L +F
Sbjct: 192 LILPED---AQDFLEKLPIEKFYGVGKRSVEKLHQL-GVFTGADLLEIPEMTLIDLFGRF 247
Query: 321 TADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYR------KLAEIAEMLSA 374
D + G+ ++ R RKSI SERT+ LLY ++++ A+ +
Sbjct: 248 GYDLYRK-ARGISNSPVKSNRIRKSIGSERTYG-----KLLYEEDDVKSEISKNAQRVVD 301
Query: 375 DMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRL 432
+Q+ GRT+ LK++ + F T+ +TL + E I + A + + E + +RL
Sbjct: 302 TLQRNHKVGRTIVLKVRYSDFSTLTKRITLDDVTNDFEVIDQVAKTIYDSLDESKLGVRL 361
Query: 433 IGLRVTQFNED 443
+G+ VT ++
Sbjct: 362 LGVTVTGLEDN 372
>gi|126698476|ref|YP_001087373.1| DNA polymerase IV (Pol IV) [Clostridium difficile 630]
gi|123174445|sp|Q18A91.1|DPO4_CLOD6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|115249913|emb|CAJ67732.1| DNA polymerase IV (Pol IV) [Clostridium difficile 630]
Length = 365
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 193/355 (54%), Gaps = 26/355 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMDAFYA++E N LKG+P+ VG + ++ T +YEAR+FG+ +AMP +
Sbjct: 5 RKIIHIDMDAFYASIEQRDNKKLKGRPVIVGGNPQSRGVVATCSYEARKFGIHSAMPSAV 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI-SG 219
A CP +FV F Y S+ R +F +Y SLDEAYLD+T+ ++ I S
Sbjct: 65 AYNRCPYAVFVRPRFDVYKSVSEKIRDIFYRYTDLVEPLSLDEAYLDVTK--NKKNIDSS 122
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IEIA++++ ++ E GLT SAGV+ N+ LAK+ SD+ KPNG V+ + F+ LP
Sbjct: 123 IEIAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEEN--AQDFLDKLP 180
Query: 280 IRKIGGIGKVTEHILRDVFGINT-----CEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
+ K G+GKVT + L+++ GI T C + + L +F + + G+
Sbjct: 181 VNKFFGVGKVTSNTLKNL-GIKTGYDLRCLNLFE----LENIFKKRGYELY-KFARGIDD 234
Query: 335 TNTPQARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
R RKS+ +E T S + D+ L E+ E + ++ G+TLTLK+K
Sbjct: 235 RPVEPNRVRKSVGAETTLSHNLDIDEEETRNILDELCEEVCHRLKNSEKFGKTLTLKIKY 294
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS---LRLIGLRVTQFNEDK 444
F TR+++L+ YI DI LL+ + V+ +RL+G+ ++ ++ K
Sbjct: 295 EDFTKITRSLSLEHYIDEYNDIRSGVDNLLR-NVEVNGKQIRLLGVTISNLSDKK 348
>gi|212709381|ref|ZP_03317509.1| hypothetical protein PROVALCAL_00417 [Providencia alcalifaciens DSM
30120]
gi|212688293|gb|EEB47821.1| hypothetical protein PROVALCAL_00417 [Providencia alcalifaciens DSM
30120]
Length = 351
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 150/254 (59%), Gaps = 10/254 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+AA+E +PSL+ P+AVG + ++ TANYEARR+GV +AM +
Sbjct: 2 RKIIHIDMDCFFAAIEMRDDPSLRNVPLAVGGSADRRGVLSTANYEARRYGVHSAMSTAL 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP L VP Y S R++F +Y SLDEAYLD+T+ C++ S
Sbjct: 62 ALKLCPHLKVVPGRMAVYKEVSHHIRQIFARYTDLIEPLSLDEAYLDVTD-CQQLHGSAT 120
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IAE +R +++E LT SAG+AP + LAK+ SD+NKPNGQFV+ + TF++SLP+
Sbjct: 121 LIAEAIRQQIFDELQLTASAGIAPIKFLAKIASDMNKPNGQFVITPQELP--TFVASLPL 178
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST-ADFFLSVGLGLGSTNTPQ 339
+KI G+GKVT L D+ G+ TC ++ QK +L + S G+
Sbjct: 179 KKIPGVGKVTAQKLADM-GLLTCSDV-QKYDMLALIKSMGKFGQALWERCHGIDERAVNP 236
Query: 340 ARFRKSISSERTFS 353
R RKS+ ERT +
Sbjct: 237 ERLRKSVGVERTLA 250
>gi|315226090|ref|ZP_07867878.1| DNA-directed DNA polymerase III kappa subunit [Parascardovia
denticolens DSM 10105 = JCM 12538]
gi|315120222|gb|EFT83354.1| DNA-directed DNA polymerase III kappa subunit [Parascardovia
denticolens DSM 10105 = JCM 12538]
Length = 451
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 119/358 (33%), Positives = 192/358 (53%), Gaps = 28/358 (7%)
Query: 106 SWLHVDMDAFYAAVETLSNPSLKGKPMAVGT--MSMICTANYEARRFGVRAAMPGFIARK 163
S LH+DMDAFYA+ E + +P LKGKP+ +GT S++ A+YEAR FGV +AM AR+
Sbjct: 28 SMLHIDMDAFYASCEIVRHPELKGKPVIIGTGQRSVVSAASYEARAFGVNSAMAVAQARR 87
Query: 164 LCPELIFVPTDFTKYTYYSDLTRKVFCKYDP---NFMAASLDEAYLDITEVCRERGISGI 220
LCP+ I++P D YY ++RKVF + S+DE Y+D++ + G
Sbjct: 88 LCPQGIYLPVDM---AYYRSMSRKVFAIFHQVTDQIEQVSVDEGYMDVSAALLQWG-DPR 143
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+I +R V E G+TCS G+A N+L+AK+ S KP+G ++P R A FI +P+
Sbjct: 144 KIGAWIRQEVRERVGVTCSVGIASNKLIAKLASTNAKPDGMLLIPVGRQA--EFIQMMPV 201
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
R I GIG T+ L + +GI T +++ L L A+ S + A + G+GS
Sbjct: 202 RSIPGIGPSTQKAL-EKWGIATVKQLSQLSLADLTSALRSPAHARYLYEAARGIGSDQVV 260
Query: 339 QARFRKSISSERTFSVTEDKALLYRKLAEIA-EMLSADMQKEGLRGRTLTLKLKTASFEV 397
KSI +ERTF D L L A + ++ +++ GL RT+T+KL+ A
Sbjct: 261 VDAPDKSIGAERTFPHDTDSWLAVAGLLRWACDRVATTLRERGLYARTVTVKLRLADLSH 320
Query: 398 RTRAVTLQKYISSSEDI-------------LKHASVLLKAELPVSLRLIGLRVTQFNE 442
++++T+ + ++++ + + + +A LP +RL G+ + F++
Sbjct: 321 ISKSLTVAEPMNTASQLYPLALKLLARLLSMGQPAAGKEARLPQQIRLAGIGTSHFSD 378
>gi|157376554|ref|YP_001475154.1| DNA polymerase IV [Shewanella sediminis HAW-EB3]
gi|189027689|sp|A8FYV3.1|DPO4_SHESH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|157318928|gb|ABV38026.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
Length = 360
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 123/355 (34%), Positives = 191/355 (53%), Gaps = 25/355 (7%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
+ +H+DMD ++AAVE P L+GKP+AVG S +I T NYEAR+FGVR+AM
Sbjct: 2 KKIIHIDMDCYFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARKFGVRSAMASGY 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP+LI VP + Y S R+VF Y SLDEAYLD+T+ + +G S
Sbjct: 62 ALKLCPDLILVPGRMSVYKEVSAQIREVFSHYTDLIEPLSLDEAYLDVTDCTQCQG-SAT 120
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 279
IAE +R ++E GLT SAG+AP + LAK+ SD+NKPNGQ+V+ PN + F+ LP
Sbjct: 121 LIAEAIRQEIFELTGLTASAGIAPIKFLAKIASDLNKPNGQYVITPN---MIPAFVKDLP 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+ KI G+GKVT L D+ G+ TC ++ + G+ + N
Sbjct: 178 LIKIPGVGKVTGKKLEDI-GLITCSDLQAYPEAALIERFGKFGSVLIERAQGIDTRNISP 236
Query: 340 ARFRKSISSERT-----FSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLK---LK 391
R RKS+ E T +S+ + + ++ + + E+A + + + + + LK K
Sbjct: 237 HRERKSVGVETTLAKDIYSLEQCQGVMPQLIQELATRIKRSAKDRTIHKQVVKLKFNDFK 296
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 446
+ E R+ V+++ + D+L A L+ + +RL+G+ V ++ ++
Sbjct: 297 QTTIEHRSDEVSVKLFY----DLLSQA---LERQQGRGIRLLGVSVGLASQSDIK 344
>gi|262280632|ref|ZP_06058415.1| nucleotidyltransferase/DNA polymerase [Acinetobacter calcoaceticus
RUH2202]
gi|262257532|gb|EEY76267.1| nucleotidyltransferase/DNA polymerase [Acinetobacter calcoaceticus
RUH2202]
Length = 351
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 121/345 (35%), Positives = 187/345 (54%), Gaps = 14/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P L+ P+ + + ++I A+Y AR FG+R+AM A
Sbjct: 2 RKIIHIDMDAFYASVELREQPELRHLPVVISSHHPRAVIAAASYPAREFGLRSAMSMSQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP+++ + +F KY S +F +Y SLDEAYLD+TE ++ S E
Sbjct: 62 RKLCPQVVIIEPNFEKYRTVSAQIHSIFQQYTLLIEPLSLDEAYLDVTENLKQIA-SATE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A +R ++ GLT SAGVAPN+ LAK+ SD NKPNG V+ ++A FI LP++
Sbjct: 121 VAMHIREDIFRLTGLTASAGVAPNKFLAKIASDWNKPNGLCVIKPSQVA--NFIQDLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G+GKVT+ L+ + ++T + LQK ++L F +L G+
Sbjct: 179 KIPGVGKVTQEKLQQL-QLHTLGD-LQKIEEAILVHHFGKYGQQLYLYAQ-GIDHRPVQA 235
Query: 340 ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R R+ IS E TF A +AE + ++K+ L R + +KLK +F+
Sbjct: 236 ERARQQISKETTFDSDFTLAQCQPYWQGLAEKVWQSLEKKQLNARGVNVKLKLKNFQTLQ 295
Query: 400 RAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFN 441
+ + ++ I S D+++ +LL + ++P RLIG+ V Q
Sbjct: 296 HSKSFKRPIQSLHDLIQVLFLLLNEMQIPEHFQFRLIGIGVYQLQ 340
>gi|417606183|ref|ZP_12256714.1| DNA polymerase IV [Escherichia coli STEC_DG131-3]
gi|345365850|gb|EGW97950.1| DNA polymerase IV [Escherichia coli STEC_DG131-3]
Length = 351
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 108/255 (42%), Positives = 150/255 (58%), Gaps = 12/255 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +HVDMD F+AAVE NP+L+ P+A+G +I TANY AR+FGVR+AMP +
Sbjct: 2 RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRARRGVISTANYPARKFGVRSAMPTGM 61
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP L +P F Y S+ R++F +Y SLDEAYLD+T+ G S
Sbjct: 62 ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHG-SAT 120
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLP 279
IA+E+R +++ E LT SAGVAP + LAK+ SD+NKPNGQFV+ P + V TF+ +LP
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAE---VPTFLQTLP 177
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHST-ADFFLSVGLGLGSTNTP 338
+ KI G+GKV+ L + G+ TC + +QK L+ + G+ +
Sbjct: 178 LAKIPGVGKVSAAKL-EAMGLRTCGD-VQKSDLVILLKRFGKFGRILWERSQGIDERDVN 235
Query: 339 QARFRKSISSERTFS 353
R RKS+ ERT +
Sbjct: 236 SERLRKSVGVERTMA 250
>gi|315283011|ref|ZP_07871293.1| DNA polymerase IV [Listeria marthii FSL S4-120]
gi|313613348|gb|EFR87210.1| DNA polymerase IV [Listeria marthii FSL S4-120]
Length = 356
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 127/351 (36%), Positives = 192/351 (54%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR++GV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVSTCSYEARKYGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A +++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATLVARDIQQTIYRELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYQLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDNRILEQSLMKFAKKVEERLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>gi|294673256|ref|YP_003573872.1| DNA polymerase IV [Prevotella ruminicola 23]
gi|294473448|gb|ADE82837.1| putative DNA polymerase IV [Prevotella ruminicola 23]
Length = 368
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 204/379 (53%), Gaps = 43/379 (11%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIARKL 164
+HVDMD F+AAVE NP LKGKP+AVG ++ TA+YEARRFGV +A +A++L
Sbjct: 4 IHVDMDQFFAAVEQRDNPELKGKPIAVGHDVERGVVSTASYEARRFGVHSAQSIQLAKRL 63
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GIEIA 223
CP+LI V + +Y S ++F Y SLDEA+LD+TE +RGI G++IA
Sbjct: 64 CPQLIIVEPHYQRYKEVSMQLHEIFHDYTDLIEPISLDEAFLDVTE--NKRGIELGVDIA 121
Query: 224 EELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKI 283
E++ + E GLT SAGV+ + LAK+ SD KP+G V+ DR + FI+ L + KI
Sbjct: 122 REIKQRIRETTGLTASAGVSYCKFLAKIASDWRKPDGLTVIHPDR--ALDFIAQLKVEKI 179
Query: 284 GGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADF------FLSVGLGLGSTNT 337
G+G+ T + + GI T + L+ SL + T DF F G+ +
Sbjct: 180 WGVGQKTAEKMHRM-GIFTGMD-LRNTSL-----ARLTQDFGKMGQVFYDFARGIDTRPV 232
Query: 338 PQARFRKSISSERTF--SVTEDKAL---LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKT 392
RKS+S E+TF ++E+ A+ LY+ + E+ + +K GRTLTLK+K
Sbjct: 233 ISEWERKSVSCEQTFETDISENAAVTIHLYQTVMELVRRI----EKNDFEGRTLTLKVKF 288
Query: 393 ASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQFNEDKVRAPSD 450
F+ TR++T+ + + +DIL A L++ S +RL+GL V S+
Sbjct: 289 LDFKQITRSMTVDHVLCTKDDILPLAKQLMQGVEFHSHPIRLLGLGV-----------SN 337
Query: 451 PTQKTLTNFMTSGHASKKI 469
P L+ + S K I
Sbjct: 338 PGSHPLSGGLASRQGEKWI 356
>gi|418669590|ref|ZP_13230970.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|421120235|ref|ZP_15580547.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. Brem
329]
gi|410346725|gb|EKO97668.1| ImpB/MucB/SamB family protein [Leptospira interrogans str. Brem
329]
gi|410754665|gb|EKR16314.1| ImpB/MucB/SamB family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
Length = 362
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 121/356 (33%), Positives = 198/356 (55%), Gaps = 22/356 (6%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGF 159
+R +HVDMDAFYA+VE P KGKP+ VG + S++ A+YEAR+FGVR+AMP
Sbjct: 3 TRKIIHVDMDAFYASVEQRDFPEYKGKPLIVGGPPNSRSVVSAASYEARKFGVRSAMPCS 62
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS- 218
A +L P+ IFV F Y S R++F +Y SLDE YLD+T ++ I
Sbjct: 63 KAAQLAPQAIFVFPRFEVYKEVSKQIREIFLEYTDLVEMLSLDEGYLDVT--FNKKNIPY 120
Query: 219 GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFISS 277
+ IA+E+RT +++ LT SAGV ++ ++K+ S+ NKPNG VLP+D V++FI
Sbjct: 121 AVTIAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKPNGLTVVLPDD---VISFIDP 177
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ G+GKVT ++++ GI T +++ K ++ + G
Sbjct: 178 LPVSSFHGVGKVTARKMKEL-GIYTGKDLRTKSIDELVQHFGKMGIYYYKISRGEDERMV 236
Query: 338 PQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
+R RKS+ +E TF + D L ++L ++A ++ ++K+ G+TLTLK+K F
Sbjct: 237 QSSRERKSLGAENTFDRDKLDYDDLLKQLKDVAVVVERRLEKKDFAGKTLTLKIKFYDFS 296
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV---------SLRLIGLRVTQFNED 443
++TR+ TL + I ++++ A L + + ++RL+G+ ++ N +
Sbjct: 297 LKTRSKTLSEPIFKADELYSTAIELFEEFFEIKYGKKSAIKAIRLLGISLSHPNSE 352
>gi|410595093|ref|YP_006951820.1| DNA polymerase IV [Streptococcus agalactiae SA20-06]
gi|410518732|gb|AFV72876.1| DNA polymerase IV [Streptococcus agalactiae SA20-06]
Length = 364
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/350 (34%), Positives = 195/350 (55%), Gaps = 20/350 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+A+VE NPSLKGKP+ +G+ ++ T NYEAR+FGV +
Sbjct: 9 DTSRKIIHIDMDAFFASVEERDNPSLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY R +F KY S+DEAYLD+TE +
Sbjct: 69 AMSSKEAYERCPQAIFISGNYQKYRQVGMEVRDIFKKYTDLVEPMSIDEAYLDVTE--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S +++A+ ++ ++ + LTCSAG++ N+ LAK+ SD KP G +LP+
Sbjct: 127 MGIKSAVKLAKMIQYDIWNDVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQ---AQ 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLG 331
F+ LPI K G+GK + L G+ T E++L + L +F D + G
Sbjct: 184 DFLKPLPIEKFHGVGKRSVEKLH-ALGVYTGEDLLSLSEVSLIDMFGRFGYDRYRK-ARG 241
Query: 332 LGSTNTPQARFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKL 390
+ ++ R RKSI SE+T+ + ++A + ++++ + + A ++K G+T+ LK+
Sbjct: 242 INASPVKPDRVRKSIGSEKTYGKLLYNEADIKAEISKNVQRVVASLEKNKKVGKTIVLKV 301
Query: 391 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVT 438
+ A FE T+ +TL++Y + I + A + E +RL+G+ VT
Sbjct: 302 RYADFETLTKRMTLEEYTQDFQIIDQVAKAIFDTLEESVFGIRLLGVTVT 351
>gi|420236521|ref|ZP_14741003.1| Fis family transcriptional regulator [Parascardovia denticolens
IPLA 20019]
gi|391880144|gb|EIT88639.1| Fis family transcriptional regulator [Parascardovia denticolens
IPLA 20019]
Length = 449
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/358 (33%), Positives = 192/358 (53%), Gaps = 28/358 (7%)
Query: 106 SWLHVDMDAFYAAVETLSNPSLKGKPMAVGT--MSMICTANYEARRFGVRAAMPGFIARK 163
S LH+DMDAFYA+ E + +P LKGKP+ +GT S++ A+YEAR FGV +AM AR+
Sbjct: 28 SMLHIDMDAFYASCEIVRHPELKGKPVIIGTGQRSVVSAASYEARAFGVNSAMAVAQARR 87
Query: 164 LCPELIFVPTDFTKYTYYSDLTRKVFCKYDP---NFMAASLDEAYLDITEVCRERGISGI 220
LCP+ I++P D YY ++RKVF + S+DE Y+D++ + G
Sbjct: 88 LCPQGIYLPVDM---AYYRSMSRKVFAIFHQVTDQIEQVSVDEGYMDVSAALLQWG-DPR 143
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+I +R V E G+TCS G+A N+L+AK+ S KP+G ++P R A FI +P+
Sbjct: 144 KIGAWIRQEVRERVGVTCSVGIASNKLIAKLASTNAKPDGMLLIPVGRQA--EFIQMMPV 201
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
R I GIG T+ L + +GI T +++ L L A+ S + A + G+GS
Sbjct: 202 RSIPGIGPSTQKAL-EKWGIATVKQLSQLSLADLTSALRSPAHARYLYEAARGIGSDQVV 260
Query: 339 QARFRKSISSERTFSVTEDKALLYRKLAEIA-EMLSADMQKEGLRGRTLTLKLKTASFEV 397
KSI +ERTF D L L A + ++ +++ GL RT+T+KL+ A
Sbjct: 261 VDAPDKSIGAERTFPHDTDSWLAVAGLLRWACDRVATTLRERGLYARTVTVKLRLADLSH 320
Query: 398 RTRAVTLQKYISSSEDI-------------LKHASVLLKAELPVSLRLIGLRVTQFNE 442
++++T+ + ++++ + + + +A LP +RL G+ + F++
Sbjct: 321 ISKSLTVAEPMNTASQLYPLVLKLLARLLSMGQPAAGKEARLPQQIRLAGIGTSHFSD 378
>gi|289550388|ref|YP_003471292.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
gi|289179920|gb|ADC87165.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
Length = 359
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 190/343 (55%), Gaps = 17/343 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP L+GKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIVHIDMDFFFAQVEMRDNPKLRGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP+ +V + KY S+ +F Y SLDEAYLDIT + R +
Sbjct: 64 AHKLCPDGYYVQGQYEKYRTISNEIMSIFRSYTEAVEPMSLDEAYLDITHLVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA +R +YE+ LT SAGV+ N+ LAK+ S +NKPNG V+ D V + +L I
Sbjct: 123 QIANYIRRDIYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVI--DYENVHKILMALDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK +E I+ GI +++ QK L +F + + G+ +
Sbjct: 181 GDFPGVGKASEKIMHK-HGIYNGQDLYQKDVFELVRLFGKRGRGLY-NKARGIDDSPVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ V +D +L +K+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRIRKSVGTERTFATDVNDDDEIL-QKMWELSGKTAERLNKLQKSAKTVTVKIKTFKFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELP---VSLRLIGLRV 437
++ ++L+ I S DI + + +L AEL +RLIG+ V
Sbjct: 298 LSKQMSLRDPIRSETDIY-NIAYMLYAELKDPETPIRLIGVTV 339
>gi|50083505|ref|YP_045015.1| DNA polymerase IV [Acinetobacter sp. ADP1]
gi|81613392|sp|Q6FFG4.1|DPO4_ACIAD RecName: Full=DNA polymerase IV; Short=Pol IV
gi|49529481|emb|CAG67193.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Acinetobacter sp. ADP1]
Length = 351
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/349 (34%), Positives = 193/349 (55%), Gaps = 22/349 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM---SMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LK P+ + + ++I A+Y AR +G+R+AMP A
Sbjct: 2 RKIIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
RKLCP+LI + +F KY S ++F ++ SLDEAYLD+TE S +
Sbjct: 62 RKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLP-SATD 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A ++R ++E+ LT SAGVAPN+ LAK+ SD NKPNG V+ + VM FI +LP++
Sbjct: 121 VAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQ--VMQFIQNLPLK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
KI G+G+VT+ L+ + + T ++ + ++L F +L G+ +
Sbjct: 179 KIPGVGRVTQDKLQQL-KLETLGDLQHIEEAVLIQHFGKYGKQLYL-YAQGIDHRSVQAE 236
Query: 341 RFRKSISSERTFSVTEDKALLYRKLAE----IAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R R+ IS E TF D+ L + + +AE + +Q + L+ R + +KLK F+
Sbjct: 237 RVRQQISKETTF----DQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQ 292
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPVSL----RLIGLRVTQFN 441
V + + ++ + S ++ K LL E+ ++L RLIG+ + Q +
Sbjct: 293 VFQHSKSFKRALQSLDE-FKSVLALLLQEISLTLDDQYRLIGVGLYQLS 340
>gi|288906138|ref|YP_003431360.1| DNA polymerase IV [Streptococcus gallolyticus UCN34]
gi|288732864|emb|CBI14443.1| putative DNA polymerase IV [Streptococcus gallolyticus UCN34]
Length = 365
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 125/363 (34%), Positives = 199/363 (54%), Gaps = 31/363 (8%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D+SR +H+DMDAF+A+VE NP LKGKP+ +G+ ++ T NYEAR+FGV +
Sbjct: 9 DISRKIIHIDMDAFFASVEERDNPDLKGKPVIIGSDPRKTGGRGVVSTCNYEARKFGVHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ +F+ ++ KY R++F +Y S+DEAYLD+TE +
Sbjct: 69 AMSSKEAYERCPQAVFISGNYQKYRKVGMQIREIFKRYTDLVEPMSIDEAYLDVTE--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S I+IA+ ++ +++E LTCSAGV+ N+ LAK+ SD KP G +LP D
Sbjct: 127 LGIKSAIKIAKMIQYDIWKEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPED---AQ 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLG 331
F+ LPI K G+GK + L + G+ T ++L+ + L +F D + G
Sbjct: 184 DFLKKLPIEKFYGVGKRSVEKLHQL-GVFTGADLLEIPEMTLIDLFGRFGYDLYRK-ARG 241
Query: 332 LGSTNTPQARFRKSISSERTFSVTEDKALLYR------KLAEIAEMLSADMQKEGLRGRT 385
+ ++ R RKSI SERT+ LLY ++++ A+ + +Q+ GRT
Sbjct: 242 ISNSPVKSNRIRKSIGSERTYG-----KLLYEEDDVKSEISKNAQRVVDTLQRNHKVGRT 296
Query: 386 LTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRVTQFNED 443
+ LK++ + F T+ +TL + E I + A + + E + +RL+G+ VT ED
Sbjct: 297 IVLKVRYSDFSTLTKRITLDDVTNDFEVIDQVAKTIYDSLDESKLGVRLLGVTVTGL-ED 355
Query: 444 KVR 446
++
Sbjct: 356 NIQ 358
>gi|424033801|ref|ZP_17773212.1| DNA polymerase IV [Vibrio cholerae HENC-01]
gi|408873914|gb|EKM13097.1| DNA polymerase IV [Vibrio cholerae HENC-01]
Length = 342
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 137/354 (38%), Positives = 184/354 (51%), Gaps = 36/354 (10%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFIARKLCPE 167
MD FYAAVE NPS +G +AVG +I T NYEAR+FGVR+AMP A +LCP
Sbjct: 1 MDCFYAAVEMRDNPSYRGIALAVGGHEKQRGVISTCNYEARKFGVRSAMPTARALQLCPH 60
Query: 168 LIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELR 227
L+ VP Y S R +F +Y P SLDEAYLD+T+ RG S IAE +R
Sbjct: 61 LLVVPGRMHVYKQVSQQIRTIFERYTPLIEPLSLDEAYLDVTDSTACRG-SATLIAESIR 119
Query: 228 TSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIG 287
++ E GLT SAG+AP + LAKV SD+NKPNGQFV+P ++ V + LP+ KI G+G
Sbjct: 120 NDIWNELGLTASAGIAPIKFLAKVASDMNKPNGQFVIPPEK--VQEVVDKLPLEKIPGVG 177
Query: 288 KVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSI 346
KV+ L G CE++ L F A + G+ R RKS+
Sbjct: 178 KVSLEKLHQA-GFYLCEDIKNSDYRELLRQFGRQGASLW-KRSHGIDDREVVVERERKSV 235
Query: 347 SSERTFS-----------VTEDKALLYRKLAEIAEMLSAD--MQKEGLRGRTLTLKLKTA 393
ERTFS V EDK LY +L + E S D + K+G +KLK A
Sbjct: 236 GVERTFSENIVTYDECWQVIEDK--LYPELEKRLEKASPDKSIIKQG-------IKLKFA 286
Query: 394 SFEVRT-RAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVR 446
F++ T + Q + +++L+ +LK + +RL+GL V E + R
Sbjct: 287 DFQLTTIEHIHPQLELDDFKELLRD---ILKRQNGREIRLLGLSVMLKPEQQAR 337
>gi|441495813|ref|ZP_20978052.1| DNA polymerase IV [Fulvivirga imtechensis AK7]
gi|441440562|gb|ELR73820.1| DNA polymerase IV [Fulvivirga imtechensis AK7]
Length = 347
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 177/310 (57%), Gaps = 14/310 (4%)
Query: 112 MDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKLCPEL 168
MDAF+A+VE +P L+GKP+AVG S ++ A+YEAR+FGVR+AMP IA + CP+L
Sbjct: 1 MDAFFASVEQRDHPELRGKPVAVGGSSERGVVAAASYEARKFGVRSAMPSSIAARKCPDL 60
Query: 169 IFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRT 228
IFV F Y S+ R +F +Y SLDEAYLD+T ++ S IA E++
Sbjct: 61 IFVRPRFDAYKAVSNQIRDIFFEYTDLVEPLSLDEAYLDVTH-NKKNMPSATLIAREIKK 119
Query: 229 SVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPIRKIGGIG 287
+ E GLT SAG++ N+ LAK SD+NKP+G F++ P D A ++ L I K GIG
Sbjct: 120 RIKETTGLTASAGISINKFLAKTASDVNKPDGLFLIAPEDAEA---YVERLAIEKFFGIG 176
Query: 288 KVT-EHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSI 346
KVT E + + GI +++ + V ++ + + R RKS+
Sbjct: 177 KVTAEKMFK--MGIRNGQDLKRYAEADLVVRFGKAGRYYYRIARAIDDREVNPNRIRKSL 234
Query: 347 SSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTL 404
+E TF +TE + + ++L +I + L+ M++ +G+TLTLK+K F+ TR+ T+
Sbjct: 235 GAENTFEKDLTELEE-IRKELVDITKTLTMRMERSNTKGKTLTLKVKFHDFQQITRSKTI 293
Query: 405 QKYISSSEDI 414
K+I + + I
Sbjct: 294 TKWIENEKQI 303
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,225,973,199
Number of Sequences: 23463169
Number of extensions: 425723767
Number of successful extensions: 1146182
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5616
Number of HSP's successfully gapped in prelim test: 2174
Number of HSP's that attempted gapping in prelim test: 1121177
Number of HSP's gapped (non-prelim): 9632
length of query: 677
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 527
effective length of database: 8,839,720,017
effective search space: 4658532448959
effective search space used: 4658532448959
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)