BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005785
(677 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74944|POLK_SCHPO DNA polymerase kappa OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug40 PE=1 SV=3
Length = 547
Score = 294 bits (752), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 158/429 (36%), Positives = 262/429 (61%), Gaps = 19/429 (4%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPV------ 82
K+G + V+++K+ +++YE SKGSK+FE E++++ ++ +IE ++ K S +
Sbjct: 45 KSGQENVNQKKINEIIYEASKGSKFFEAEQKRDRELRLRIEKVQVEVEKYQSKLRFDKAF 104
Query: 83 ---ISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
+ Q+ D + + A RDL++ +HVD DAFYA++E L NP LK PMAVG S+
Sbjct: 105 QREWTIRQESVDTTVEDFRAKRDLTQIIVHVDCDAFYASIEELKNPKLKSLPMAVGK-SV 163
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+CTANY AR+FGVR+AMP FIARK+CP+L+ +P + ++Y S + V +YD N A
Sbjct: 164 LCTANYVARKFGVRSAMPEFIARKICPDLVVIPLNLSEYAIKSKEIQNVLAQYDSNLCPA 223
Query: 200 SLDEAYLDITEVCRERGIS-GIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSD 254
S+DE Y+++T R + ++ +E + E++R V+EE G+T S G+A N+LLAK+ S+
Sbjct: 224 SIDEFYMNLTSHLRLQELAFTVENITMVVEKIRKQVHEETGVTVSCGIAANKLLAKIASN 283
Query: 255 INKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 314
KPN QF +P D + + F++ LP+R++ GIG+V E L + I TC ++ + +L
Sbjct: 284 KRKPNNQFFIPFDEIGISKFMNDLPVREVSGIGRVLEQQLLGL-EIKTCGDIQRNLVILS 342
Query: 315 AVFSHSTADFFLSVGLGLGSTNTPQ--ARFRKSISSERTFSVT-EDKALLYRKLAEIAEM 371
+F + L G G+T + RK+I SE TFS +++ KL + +
Sbjct: 343 YIFLPKSFQNLLRCSYGFGTTILDEYGESKRKTIGSEATFSSNLSSPSIIEYKLRLLVQN 402
Query: 372 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR 431
+S ++QK GL ++ +K KT+ F+V T+ ++ ++I S D+LK A LL+ P+++R
Sbjct: 403 VSENLQKRGLVTNSIAIKYKTSEFQVHTKQKSIGQFIHSESDLLKPALQLLRQSYPMTIR 462
Query: 432 LIGLRVTQF 440
L+G+R T+
Sbjct: 463 LLGVRATKL 471
>sp|P34409|POLK_CAEEL DNA polymerase kappa OS=Caenorhabditis elegans GN=polk-1 PE=3 SV=3
Length = 596
Score = 286 bits (731), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 188/493 (38%), Positives = 274/493 (55%), Gaps = 65/493 (13%)
Query: 25 YTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVIS 84
+ + KAGM+G+DKEK+ KV+ E + S Y +++++ I++K+ ++ R T
Sbjct: 4 FNDNKAGMNGLDKEKITKVIEENTSAS-YSSFSKKQQSRIEEKVLEIKNRLQTATREERQ 62
Query: 85 HYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTAN 144
+ + + ++LE++RDLSR + +DMDA++AAVE NP+L+ PMAVG+ +M+ T+N
Sbjct: 63 KSEILMENLEMKLESSRDLSRDCVCIDMDAYFAAVEMRDNPALRTVPMAVGSSAMLSTSN 122
Query: 145 YEARRFGVRAAMPGFIARKLCPELIFVPTD---FTKYT---------------------Y 180
Y ARRFGVRA MPGFI+ KLCP L VP + +TK +
Sbjct: 123 YLARRFGVRAGMPGFISNKLCPSLTIVPGNYPKYTKVSRQFSQIFMEYDSDVGMMSLDEA 182
Query: 181 YSDLT--------RKVF----------C---KYDPN---FMAASLDEAYLDITEVCR--- 213
+ DLT +K F C ++D N ++E+ E R
Sbjct: 183 FIDLTDYVASNTEKKTFKRHRFGGDCPCWLPRFDENENTLEDLKIEESICPKCEKSRKIY 242
Query: 214 ----ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRM 269
E G E E+R V + GLTCSAG+A N +LAK+CSD+NKPNGQ+VL ND+
Sbjct: 243 YDHVEFGTGREEAVREIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQYVLENDKN 302
Query: 270 AVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVG 329
A+M F+ LPIRK+GGIG+V E L+ I T +M K +L F+ + + FL
Sbjct: 303 AIMEFLKDLPIRKVGGIGRVCEAQLK-AMDIQTVGDMNLKKNLYPLCFTPLSQESFLRTA 361
Query: 330 LGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGL-RGRTLTL 388
LGL + RKSIS ERTFS T D +L + EI ML D++K G+ G+T+TL
Sbjct: 362 LGLPGRPSESDPRRKSISVERTFSPTSDFNILLEEHQEICRMLEEDVRKSGIVGGKTVTL 421
Query: 389 KLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQ--FNEDKVR 446
KLK +SF+V TR++T + S EDI K + LL+ E +RL+G+R++Q F ED+ +
Sbjct: 422 KLKLSSFDVLTRSLTPSDVVKSLEDIQKFSLELLEKEKGKEIRLLGVRLSQLIFEEDEKK 481
Query: 447 APSDPTQKTLTNF 459
KT+T F
Sbjct: 482 R-----SKTITEF 489
>sp|Q9QUG2|POLK_MOUSE DNA polymerase kappa OS=Mus musculus GN=Polk PE=1 SV=1
Length = 852
Score = 226 bits (577), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 104/187 (55%), Positives = 141/187 (75%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 24 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 83
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
DK +ELE R+L+ + +HVDMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 84 QVDKFAMELERNRNLNNTIVHVDMDAFYAAVEMRDNPELKDKPIAVGSMSMLATSNYHAR 143
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ +YDPNFMA SLDEAYL+I
Sbjct: 144 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNI 203
Query: 209 TEVCRER 215
T+ +ER
Sbjct: 204 TQHLQER 210
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 167/263 (63%), Gaps = 10/263 (3%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFI 275
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ + R AVM FI
Sbjct: 286 GTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFI 345
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGST 335
LPIRK+ GIGKVTE +L GI TC E+ Q+ +LL +FS ++ +FL + LGLGST
Sbjct: 346 KDLPIRKVSGIGKVTEKMLM-ALGIVTCTELYQQRALLSLLFSETSWHYFLHIALGLGST 404
Query: 336 NTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ + RKS+S ERTFS Y E+ L+ D+QKEGL+GRT+T+KLK +F
Sbjct: 405 DLARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNF 464
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAPS 449
EV+TRA T+ IS++E+I A LL+ E+ P+ LRL+G+R++ F+ + R
Sbjct: 465 EVKTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGVRMSTFSSEDDRKHQ 524
Query: 450 DPTQKTLTNFMTSGHASKKIVGD 472
Q+++ F+ +G+ + GD
Sbjct: 525 ---QRSIIGFLQAGNQALSSTGD 544
>sp|Q9UBT6|POLK_HUMAN DNA polymerase kappa OS=Homo sapiens GN=POLK PE=1 SV=1
Length = 870
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 140/187 (74%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQK 88
KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A++TS + Q
Sbjct: 25 KAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQL 84
Query: 89 VADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEAR 148
D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+MSM+ T+NY AR
Sbjct: 85 QVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHAR 144
Query: 149 RFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDI 208
RFGVRAAMPGFIA++LCP+LI VP +F KY S +++ YDPNFMA SLDEAYL+I
Sbjct: 145 RFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNI 204
Query: 209 TEVCRER 215
T+ ER
Sbjct: 205 TKHLEER 211
Score = 214 bits (545), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 168/258 (65%), Gaps = 12/258 (4%)
Query: 216 GISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQF-VLPNDRMAVMTF 274
G S E+ +E+R + ++ LT SAG+APN +LAKVCSD NKPNGQ+ +LPN R AVM F
Sbjct: 287 GTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPN-RQAVMDF 345
Query: 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGS 334
I LPIRK+ GIGKVTE +L+ GI TC E+ Q+ +LL +FS ++ +FL + LGLGS
Sbjct: 346 IKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGS 404
Query: 335 TNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTAS 394
T+ + RKS+S ERTFS Y E+ L+ D+QKE L+GRT+T+KLK +
Sbjct: 405 THLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVN 464
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
FEV+TRA T+ +S++E+I A LLK E+ P+ LRL+G+R++ F ++ R
Sbjct: 465 FEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 524
Query: 449 SDPTQKTLTNFMTSGHAS 466
Q+++ F+ +G+ +
Sbjct: 525 Q---QRSIIGFLQAGNQA 539
>sp|B4SIF5|DPO4_STRM5 DNA polymerase IV OS=Stenotrophomonas maltophilia (strain R551-3)
GN=dinB PE=3 SV=1
Length = 356
Score = 217 bits (552), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 141/351 (40%), Positives = 199/351 (56%), Gaps = 24/351 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FGVR+AMP A
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVRA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+TE SG+E
Sbjct: 65 ERLCPDAIFVPPDFARYKAVSQQVREIFLRHTDLVEPLSLDEAYLDVTEPK-----SGME 119
Query: 222 ----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V F+
Sbjct: 120 LATDIARTIRAQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--VDAFLLP 177
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ ++ G+GKV E L GI TC ++ Q + S + G+
Sbjct: 178 LPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGVDERPV 236
Query: 338 PQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ +SISSE TF+ ED L L + ++AE +K G T+ LKLKTA F
Sbjct: 237 EPDQQVQSISSEDTFA--EDLPLEDLGEAIVQLAEKTWNATRKTERVGHTVVLKLKTAQF 294
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 442
+ TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ ++ F +
Sbjct: 295 RILTRSFTPERPPESMEE-LRDIALALRARVDLPADTRYRLVGVGLSGFRD 344
>sp|B2FLR2|DPO4_STRMK DNA polymerase IV OS=Stenotrophomonas maltophilia (strain K279a)
GN=dinB PE=3 SV=1
Length = 364
Score = 216 bits (550), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 141/351 (40%), Positives = 197/351 (56%), Gaps = 24/351 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FGVR+AMP A
Sbjct: 5 RKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVRA 64
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+LCP+ IFVP DF +Y S R +F ++ SLDEAYLD++E SGIE
Sbjct: 65 ERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVSEPK-----SGIE 119
Query: 222 ----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS 277
IA +R + EE LT SAG+APN+ LAK+ SD KP+GQFV+P R V F++
Sbjct: 120 LATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQR--VDAFLAP 177
Query: 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNT 337
LP+ ++ G+GKV E L GI TC ++ Q + S + G+
Sbjct: 178 LPVNRVPGVGKVMEGKL-AARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPV 236
Query: 338 PQARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASF 395
+ +SISSE TF+ ED L L + ++A +K G T+ LKLKTA F
Sbjct: 237 EPDQQVQSISSEDTFA--EDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLKLKTAQF 294
Query: 396 EVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVS--LRLIGLRVTQFNE 442
+ TR+ T ++ S E+ L+ ++ L+A +LP RL+G+ + F E
Sbjct: 295 RILTRSFTPERPPESMEE-LRDIALALRARVDLPAETRYRLVGVGLGGFRE 344
>sp|P58965|DPO4_THETN DNA polymerase IV OS=Thermoanaerobacter tengcongensis (strain DSM
15242 / JCM 11007 / NBRC 100824 / MB4) GN=dinB PE=3 SV=1
Length = 384
Score = 214 bits (546), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGF 159
+ R +HVDMDAF+A++E NP +GKP+ VG +S ++ T +YEAR++G+ +AMP +
Sbjct: 1 MKRKIIHVDMDAFFASIEQQDNPEYRGKPVIVGGLSGRGVVSTCSYEARKYGIHSAMPMY 60
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
+A+KLCP+ IF+P +Y S+ ++ P S+DEAYLD+T V + +
Sbjct: 61 MAKKLCPQGIFLPVRRKRYEEVSEQIFRILYDITPFVEPVSIDEAYLDVTHVDK----NP 116
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
+IA E++ V + GLT S G++ N+ LAK+ SD NKP+G V+ D V + LP
Sbjct: 117 EDIALEIKKRVKDATGLTVSVGISYNKFLAKLASDWNKPDGLMVITED--MVPEILKPLP 174
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
+ K+ GIG+ + LR + GI T E++L+ L +F + + + + G+
Sbjct: 175 VTKVHGIGEKSAEKLRSI-GIETVEDLLKLPQENLIELFGKTGVEIYNRIR-GIDERPVE 232
Query: 339 QARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R KSI E+T T++K LL + L E +E++S ++ KE L RT+T+K+KTA F V
Sbjct: 233 TMREIKSIGKEKTLEKDTKNKELLIQHLKEFSEIVSEELIKERLYCRTVTVKIKTADFAV 292
Query: 398 RTRAVTLQKYISSSEDILKHA-SVLLKAELPVSLRLIGLRVTQFN 441
T++ T+ KYI SEDI + A +L + +L +RLIGL V+ +
Sbjct: 293 HTKSKTVDKYIRFSEDIYEVAKGILEEWKLEQYVRLIGLSVSNLS 337
>sp|Q5FSM8|DPO4_GLUOX DNA polymerase IV OS=Gluconobacter oxydans (strain 621H) GN=dinB
PE=3 SV=1
Length = 356
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 130/344 (37%), Positives = 192/344 (55%), Gaps = 12/344 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+V+ +PSL+G+P+AVG ++ A+YEARRFGVR+AMP A
Sbjct: 4 RRIVHIDMDAFYASVKQRDDPSLRGRPLAVGRGEARGVVAAASYEARRFGVRSAMPSVTA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCPEL+FVP F Y S +F +Y P SLDEAYLD+T+ G S
Sbjct: 64 KRLCPELLFVPARFDVYRSVSAQIHDIFSRYTPLIQPLSLDEAYLDLTDHLGAYG-SATL 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A+ +R ++ E GLT SAGV+ NR LAK+ SD KP+G FV+ M F+++LP+
Sbjct: 123 VADRIRADIHAETGLTASAGVSYNRFLAKLASDYRKPDGLFVI-TPAMGP-EFVAALPVD 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
GIG +R GI T ++ ++ A F+ + G+ R
Sbjct: 181 AFHGIGPAMARKMR-ALGIETGADLRERDIETLTRHFGKAATFYYGISRGIDHRPVVVNR 239
Query: 342 FRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
RKS+ +E+T+ +T + A ++ L +IA L Q+ L+ RT+TLK+K A F T
Sbjct: 240 ERKSLGTEQTYLRDLTSE-ADAHQALTQIAATLWGSAQRRQLQARTVTLKVKYADFRQIT 298
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
RA TL + S E +L+ L+ P +RL+GL ++ F+
Sbjct: 299 RARTLSAPVPSEEVLLETGQSLMAPLFPFVPGVRLLGLTLSGFH 342
>sp|Q8PCW8|DPO4_XANCP DNA polymerase IV OS=Xanthomonas campestris pv. campestris (strain
ATCC 33913 / NCPPB 528 / LMG 568) GN=dinB PE=3 SV=1
Length = 359
Score = 213 bits (541), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 140/353 (39%), Positives = 206/353 (58%), Gaps = 18/353 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP+ +FVP DF +Y S R++F ++ SLDEAYLD+TE + G+
Sbjct: 62 ERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTEA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F+ LP+
Sbjct: 120 EIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAFLLPLPV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELQAHFG-SFGQSLYRRARGIDERPVEP 235
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 236 DQEVQSVSSEDTFS--EDLALDALDPHIQRLAEKTWHATRRTERIGRTVVLKLKTSNFRI 293
Query: 398 RTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFNEDKVRA 447
TR+ T ++ +S + ++ A L + ELP RL+G+ ++ F++ +++A
Sbjct: 294 LTRSYTPEQPPASLQGLVDIALGLTRRVELPPETRYRLVGVGLSGFSDPELQA 346
>sp|Q4UQI2|DPO4_XANC8 DNA polymerase IV OS=Xanthomonas campestris pv. campestris (strain
8004) GN=dinB PE=3 SV=1
Length = 359
Score = 213 bits (541), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 140/353 (39%), Positives = 206/353 (58%), Gaps = 18/353 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP+ +FVP DF +Y S R++F ++ SLDEAYLD+TE + G+
Sbjct: 62 ERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTEA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F+ LP+
Sbjct: 120 EIAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAFLLPLPV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+I G+GKV + L GI T ++ L+ L A F S G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVSDLRLRPLEELQAHFG-SFGQSLYRRARGIDERPVEP 235
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 236 DQEVQSVSSEDTFS--EDLALDALDPHIQRLAEKTWHATRRTERIGRTVVLKLKTSNFRI 293
Query: 398 RTRAVTLQKYISSSEDILKHASVLL-KAELP--VSLRLIGLRVTQFNEDKVRA 447
TR+ T ++ +S + ++ A L + ELP RL+G+ ++ F++ +++A
Sbjct: 294 LTRSYTPEQPPASLQGLVDIALGLTRRVELPPETRYRLVGVGLSGFSDPELQA 346
>sp|Q8UJK7|DPO42_AGRT5 DNA polymerase IV 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC
33970) GN=dinB2 PE=3 SV=2
Length = 357
Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 192/347 (55%), Gaps = 12/347 (3%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA---NYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+G+P+AVG+ + +YEAR FGVR+AMP A
Sbjct: 2 RKIIHVDMDAFYASVEQRDNPELRGRPVAVGSAAARGVVAAASYEAREFGVRSAMPSVTA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
+ CP+LIFVP F Y S R +F +Y SLDEAYLD+TE + I+ E
Sbjct: 62 ARRCPDLIFVPPRFDVYKAVSQQIRAIFAEYTRLIEPLSLDEAYLDVTENLKGMEIA-TE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IA E+R + + GL SAG++ N+ LAK+ SD+NKPNGQ V+ P + A F+ L +
Sbjct: 121 IASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPA---FVEQLAV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+K G+G T + FGI T ++ K A + +F + G+
Sbjct: 178 KKFHGVGPATAEKMHR-FGIETGADLKSKSLQFLAEHFGKSGAYFYGIARGIDERQVRPD 236
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TFSV D L +L +AE + + + + G+T+T+K+K + F T
Sbjct: 237 RIRKSVGAEDTFSVDINDLDLATAELRPLAEKVWHHCEAQRVSGKTVTVKVKYSDFTQAT 296
Query: 400 RAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNEDK 444
R+ T ++ ++IL+ AS LL P S+RL+G+ ++ D+
Sbjct: 297 RSRTSALPVNGIQEILEAASALLATVYPFRRSVRLLGVTLSSLTNDQ 343
>sp|Q8PGJ4|DPO4_XANAC DNA polymerase IV OS=Xanthomonas axonopodis pv. citri (strain 306)
GN=dinB PE=3 SV=1
Length = 359
Score = 210 bits (534), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 136/347 (39%), Positives = 197/347 (56%), Gaps = 16/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +PSL+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARIFGIRSAMPAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP+ IFVP DFT+Y S R++F ++ SLDEAYLD+T + G+
Sbjct: 62 ERLCPDAIFVPPDFTRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F+ L +
Sbjct: 120 EVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAFLLPLKV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+I G+GKV + L GI T ++ Q+ S G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDERPVEPD 236
Query: 341 RFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 237 QEVQSVSSEDTFS--EDLALDALAPHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRIL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 442
TR+ T ++ +S E + + A L + ELP RL+G+ + F++
Sbjct: 295 TRSYTPEQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGLGGFSD 341
>sp|Q9JRG1|DPO4_NEIMA DNA polymerase IV OS=Neisseria meningitidis serogroup A / serotype
4A (strain Z2491) GN=dinB PE=3 SV=1
Length = 352
Score = 209 bits (532), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 195/345 (56%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMQTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERECLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCTALLQAAQMLM-ARVPPQTEDAFRLIGIGV 338
>sp|A1KUQ3|DPO4_NEIMF DNA polymerase IV OS=Neisseria meningitidis serogroup C / serotype
2a (strain ATCC 700532 / FAM18) GN=dinB PE=3 SV=1
Length = 352
Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 195/345 (56%), Gaps = 20/345 (5%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAS- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 EVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRV 437
+ TR +T + +L+ A +L+ A +P + RLIG+ V
Sbjct: 295 IITRTLTYSSVLPDCAALLQAAQMLI-ARVPPQTEDAFRLIGIGV 338
>sp|Q3BP42|DPO4_XANC5 DNA polymerase IV OS=Xanthomonas campestris pv. vesicatoria (strain
85-10) GN=dinB PE=3 SV=1
Length = 359
Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 134/347 (38%), Positives = 196/347 (56%), Gaps = 16/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +P L+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPGLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP+ IFVP DF +Y S R++F ++ SLDEAYLD+T + G+
Sbjct: 62 ERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
E+A+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R V F+ L +
Sbjct: 120 EVAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--VDAFLLPLKV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
+I G+GKV + L GI T ++ Q+ S G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDERPVEPD 236
Query: 341 RFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 237 QEVQSVSSEDTFS--EDLALDALDPHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRIL 294
Query: 399 TRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFNE 442
TR+ T ++ +S E + + A L + ELP RL+G+ ++ F++
Sbjct: 295 TRSYTPEQPPTSQEALAQIALALTRRVELPTQTRYRLVGVGLSGFSD 341
>sp|Q5F8N2|DPO4_NEIG1 DNA polymerase IV OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA
1090) GN=dinB PE=3 SV=1
Length = 352
Score = 206 bits (524), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 194/347 (55%), Gaps = 20/347 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 4 RKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVATV 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G E
Sbjct: 64 KRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG-E 122
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
+A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPLG 180
Query: 282 KIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
KI G GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 181 KIPGAGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLARGTDEHPV 235
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F +
Sbjct: 236 KAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRI 295
Query: 398 RTRAVTLQKYISSSEDILKHASVLLKAELPV----SLRLIGLRVTQF 440
TR +T + +L+ A +L+ A +P + RLIG+ V +
Sbjct: 296 ITRTLTYSSVLPDCAALLQAAQMLM-ARVPPQTEDAFRLIGIGVGRL 341
>sp|Q92XH8|DPO42_RHIME DNA polymerase IV 2 OS=Rhizobium meliloti (strain 1021) GN=dinB2
PE=3 SV=2
Length = 354
Score = 206 bits (523), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 127/345 (36%), Positives = 189/345 (54%), Gaps = 14/345 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---TMSMICTANYEARRFGVRAAMPGFIA 161
R +H+DMDAFYA+VE NP L+GKP+AVG ++ A+YEAR+FGV +AMP A
Sbjct: 2 RKIIHIDMDAFYASVEQRDNPELRGKPVAVGYPEARGVVAAASYEARKFGVHSAMPSVTA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CPELIFVP F Y S + +F +Y P SLDEAYLD+TE R ++ E
Sbjct: 62 KRKCPELIFVPHRFDVYRAVSRQIQAIFAEYTPLVEPLSLDEAYLDVTENFRGLKLA-TE 120
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIR 281
IAEE+R + E LT SAGV+ N+ LAK+ SD KP+G FV+ F+ +LP++
Sbjct: 121 IAEEIRGRIRAETHLTASAGVSYNKFLAKMASDQRKPDGLFVITPKHGP--DFVQALPVK 178
Query: 282 KIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQAR 341
K G+G T ++ + GI T ++ + + +F + G+ R
Sbjct: 179 KFHGVGPATAEKMKRL-GIETGADLKSRDLAFLQQHFGKSGPYFYWIARGIDERKVKPDR 237
Query: 342 FRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRGRTLTLKLKTASFEVR 398
RKSI +E TF ED L A + ++ + G+RG+T+TLK+K A F
Sbjct: 238 IRKSIGAEDTFR--EDVHDLETARAGLKPLIDKVWHYCEASGIRGKTMTLKVKWADFTQI 295
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFN 441
TR+ T+ I+S ++ + A +LL P +RL+G+ ++ +
Sbjct: 296 TRSKTIVAPIASVAEMSEIAELLLSPIFPAPKGIRLLGVTLSSLD 340
>sp|Q2P7M9|DPO4_XANOM DNA polymerase IV OS=Xanthomonas oryzae pv. oryzae (strain MAFF
311018) GN=dinB PE=3 SV=1
Length = 359
Score = 204 bits (518), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 136/347 (39%), Positives = 197/347 (56%), Gaps = 18/347 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE +P L+GKP+ V G S++C A+YEAR FG+R+AMP A
Sbjct: 2 RKIVHVDMDAFYASVEQRDDPGLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAVRA 61
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
+LCP IFVP DF +Y S R++F ++ SLDEAYLD+T+ + G+
Sbjct: 62 ERLCPNAIFVPPDFVRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQA--KTGMQLAT 119
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
EIA+ +RT + EE LT SAG+APN+ LAK+ SD KP+GQFV+ R + F+ L +
Sbjct: 120 EIAQLIRTQIREETELTASAGIAPNKFLAKIASDWRKPDGQFVIAPSR--IDAFLLPLKV 177
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM-LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
+I G+GKV + L GI T ++ L+ L A F + G+
Sbjct: 178 NRIPGVGKVMDGKL-AALGIVTVADLRLRPLEELQAHFGSFGQSLYRR-ARGIDERPVEP 235
Query: 340 ARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+ +S+SSE TFS ED AL L + +AE ++ GRT+ LKLKT++F +
Sbjct: 236 DQDVQSVSSEDTFS--EDLALDALDTHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRI 293
Query: 398 RTRAVTLQKYISSSEDILKHASVLL-KAELPVS--LRLIGLRVTQFN 441
TR+ T ++ S E + + A L + ELP RL+G+ ++ F+
Sbjct: 294 LTRSCTPEQPPVSQEALAQIALALTRRVELPAQTRYRLVGVGLSGFS 340
>sp|Q1JF59|DPO4_STRPD DNA polymerase IV OS=Streptococcus pyogenes serotype M2 (strain
MGAS10270) GN=dinB PE=3 SV=1
Length = 364
Score = 203 bits (516), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 209/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>sp|Q8NZI1|DPO4_STRP8 DNA polymerase IV OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=dinB PE=3 SV=1
Length = 364
Score = 203 bits (516), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 209/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>sp|A2RCQ1|DPO4_STRPG DNA polymerase IV OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=dinB PE=3 SV=1
Length = 364
Score = 203 bits (516), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 209/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDLVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>sp|Q48RJ4|DPO4_STRPM DNA polymerase IV OS=Streptococcus pyogenes serotype M28 (strain
MGAS6180) GN=dinB PE=3 SV=1
Length = 364
Score = 202 bits (515), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 208/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTN--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGITM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>sp|Q5XA48|DPO4_STRP6 DNA polymerase IV OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=dinB PE=3 SV=1
Length = 364
Score = 202 bits (514), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 208/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTN--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>sp|Q99Y66|DPO4_STRP1 DNA polymerase IV OS=Streptococcus pyogenes serotype M1 GN=dinB
PE=3 SV=1
Length = 364
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 209/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVKKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTPQA--RFRKSISSERTFSVTEDKALLYRKL---AEIA---EMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI+ + ++A +Q
Sbjct: 236 YRKARGISNSPVKYDRIRKSIGSERTYA-----KLLYQETDIKAEISKNVKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>sp|Q9JYS8|DPO4_NEIMB DNA polymerase IV OS=Neisseria meningitidis serogroup B (strain
MC58) GN=dinB PE=3 SV=1
Length = 318
Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 178/307 (57%), Gaps = 15/307 (4%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAV---GTMSMICTANYEARRFGVRAAMPGFI 160
SR +H+DMDAFYA+VE P LKG+P+ V G S+IC A+YEAR+FG+ +AM
Sbjct: 3 SRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A++LCP+ ++VP F Y S VF +Y SLDEAYLD+T + +G
Sbjct: 63 AKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAG- 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
++A+E+R +++ E GLT SAG+APN+ LAK+ SD KPNGQFVLP + VM F+ +LP+
Sbjct: 122 DVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHK--VMAFLETLPL 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEM--LQKGSLLCAVFSHSTADFFLSVGLGLGSTNTP 338
KI G+GKVT ++ + G+ T ++ ++G LL +H + L G+ P
Sbjct: 180 GKIPGVGKVTLKKMQSL-GMRTAGDLRRFERGELL----NHFGRYGYRLYDLVRGTDERP 234
Query: 339 QARFRKSISSERTFSVTEDKAL--LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFE 396
R+ + ++ ED L L +AE L + ++ + +++TLKLKT F
Sbjct: 235 VKAERERLQISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFR 294
Query: 397 VRTRAVT 403
+ TR +T
Sbjct: 295 IITRTLT 301
>sp|Q0A4X2|DPO4_ALHEH DNA polymerase IV OS=Alkalilimnicola ehrlichei (strain MLHE-1)
GN=dinB PE=3 SV=1
Length = 355
Score = 200 bits (508), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 197/343 (57%), Gaps = 16/343 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +HVDMDAFYA+VE P L+G+P+ VG ++ A+YEARR G+ +AMP +
Sbjct: 4 RKIIHVDMDAFYASVEQRDRPGLRGRPVVVGGDPNGRGVVAAASYEARRHGIHSAMPAWR 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A +LCP+ +F+ F Y S + +F +Y P SLDEAYLD+++ C RG S
Sbjct: 64 AARLCPDAVFLRPRFDVYRSISAQIQALFREYTPLVEPLSLDEAYLDVSD-CPRRGGSAT 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA E+R ++E+ GLT SAGV+ N+ LAK+ SD++KP+G V+P ++ F+++LP+
Sbjct: 123 LIAREIRARIHEQTGLTASAGVSCNKFLAKIASDLDKPDGLHVIPPEQ--AEAFVAALPV 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
KI G+G+ T + + G+ T ++ + L S A F+ + G
Sbjct: 181 GKIHGVGQATRQRM-ERMGVRTGADLRRLTLLELQRAFGSRARFYYELARGRDERPVRPR 239
Query: 341 RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKS+ +E TF + A + ++A +A+ ++A + + GL GRT+TLK+K F T
Sbjct: 240 RERKSVGAETTFGEDLNNPAEMLERMAPLADKVAASLHRRGLAGRTVTLKVKYHDFRQIT 299
Query: 400 RAVTLQKYISSSEDILKHASVLLK----AELPVSLRLIGLRVT 438
R+++ + + S+++I LL+ + PV RL+G+ V+
Sbjct: 300 RSLS-GRPVQSADEIRARLPALLQDTEAGDRPV--RLLGVTVS 339
>sp|B2UKN1|DPO4_AKKM8 DNA polymerase IV OS=Akkermansia muciniphila (strain ATCC BAA-835)
GN=dinB PE=3 SV=1
Length = 359
Score = 199 bits (505), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 131/349 (37%), Positives = 188/349 (53%), Gaps = 16/349 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM---ICTANYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA++E +P +GKP+AVG M + A+YEARRFGVR+AMP A
Sbjct: 4 RKIIHVDMDAFYASIEQRDHPEYRGKPIAVGRPEMRGVVAAASYEARRFGVRSAMPSMKA 63
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGIS-GI 220
KLCP LIF Y S +F +Y SLDEA+LD+TE + GI +
Sbjct: 64 LKLCPHLIFTRNRMDVYKAVSAQIHAIFHRYTDLVEPLSLDEAFLDVTE--NKPGIPLAV 121
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA ++ + E LT SAGV+ N+ LAK+ SD KP+G F + R FI++LPI
Sbjct: 122 DIARRIKKEIRRELHLTASAGVSYNKFLAKIASDYRKPDGLFTIHPSRAE--KFIAALPI 179
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
G+G T +R + N + + L F + A F+ + G+ +
Sbjct: 180 EAFWGVGHATAERMRALSITNGAQLRARDKDFLVRHFGKTGAIFY-NFARGVDDRPVEPS 238
Query: 341 RFRKSISSERTF--SVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVR 398
R RKS+ E T+ +VT +AL R L +AE L+ + + G RG TLTLK+K F +
Sbjct: 239 RMRKSVGCEETYRENVTRAEALEQR-LPLLAEELAGRLARSGFRGNTLTLKVKFPDFVQK 297
Query: 399 TRAVTLQKYISSSEDILKHASVLLKAELPV---SLRLIGLRVTQFNEDK 444
TR T+ + ++ E IL A L++ EL + RL+GL V+ E++
Sbjct: 298 TRCATVPEILTEKEGILPLARTLME-ELDSGDRTFRLLGLSVSHPQEEQ 345
>sp|Q02WA3|DPO4_LACLS DNA polymerase IV OS=Lactococcus lactis subsp. cremoris (strain
SK11) GN=dinB PE=3 SV=1
Length = 364
Score = 198 bits (503), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 202/369 (54%), Gaps = 29/369 (7%)
Query: 94 ILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYE 146
+L D SR +H+DMDAF+A+VE NPSLKGKP+ + G ++ T +YE
Sbjct: 1 MLTFPLINDTSRKIIHIDMDAFFASVEVRDNPSLKGKPVVIARNPLQTGGRGVVSTCSYE 60
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
AR FG+ +AM A LCP+ IF+ ++ KYT S R++F +Y N AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDNIEAASIDEAYL 120
Query: 207 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 265
D+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P
Sbjct: 121 DVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMP 179
Query: 266 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADF 324
++ + F++ LP+ K G+GK T L G T ++ + + L F +
Sbjct: 180 DE---ALEFLAKLPVEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAEKFGIYGWEL 235
Query: 325 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQK 378
F G+ ++ R RKS+ ERT+ LLY +L +I++ +S +++
Sbjct: 236 FQKAN-GIHNSKVKNHRERKSVGKERTYG-----KLLYLPDDIKAELIKISKQVSESLKR 289
Query: 379 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGL 435
L+G + LKL+ + F T+ ++ + + S EDI + A + + + + +RL+G+
Sbjct: 290 HQLKGNIIILKLRYSDFTTLTKRKSMVENLDSPEDIAEAAQQIFEEIDYDESLGVRLLGV 349
Query: 436 RVTQFNEDK 444
V+ F K
Sbjct: 350 TVSGFGVQK 358
>sp|Q1J509|DPO4_STRPF DNA polymerase IV OS=Streptococcus pyogenes serotype M4 (strain
MGAS10750) GN=dinB PE=3 SV=1
Length = 364
Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 207/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAY+D+T +
Sbjct: 69 AMSCKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYVDVTN--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ L K+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDMWKEVGLTCSAGVSYNKFLGKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>sp|P0DA79|DPO4_STRPQ DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=dinB PE=3 SV=1
Length = 365
Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 206/368 (55%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ + A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVVALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + + I + A + E V +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFITLTKRVTLPELTRDAAQIEQVAESIFDTLPEHTVGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDK+
Sbjct: 351 TNL-EDKM 357
>sp|P0DA78|DPO4_STRP3 DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=dinB PE=3 SV=1
Length = 365
Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 206/368 (55%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE NP+LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY D R++F +Y S+DEAYLD+T+ +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGDQIRRIFKRYTDVVEPMSIDEAYLDVTD--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ + A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVVALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA--ELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + + I + A + E V +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFITLTKRVTLPELTRDAAQIEQVAESIFDTLPEHTVGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDK+
Sbjct: 351 TNL-EDKM 357
>sp|A2RNH9|DPO4_LACLM DNA polymerase IV OS=Lactococcus lactis subsp. cremoris (strain
MG1363) GN=dinB PE=3 SV=1
Length = 364
Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 202/369 (54%), Gaps = 29/369 (7%)
Query: 94 ILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAV-------GTMSMICTANYE 146
+L D SR +H+DMDAF+A+VE NPSLKGKP+ + G ++ T +YE
Sbjct: 1 MLTFPLINDTSRKIIHIDMDAFFASVEVRDNPSLKGKPVVIARNPLQTGGRGVVSTCSYE 60
Query: 147 ARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206
AR FG+ +AM A LCP+ IF+ ++ KYT S R++F +Y N AAS+DEAYL
Sbjct: 61 ARAFGIHSAMSAKEAYDLCPQAIFISGNYEKYTKVSKQVREIFKRYTDNIEAASIDEAYL 120
Query: 207 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLP 265
D+TE + S I+IA+ ++ ++ E GLTCSAGV+ N+ LAK+ SD KP+G ++P
Sbjct: 121 DVTE-NKIGAQSAIKIAKLIQHDIFVELGLTCSAGVSYNKFLAKIASDYEKPHGLTLIMP 179
Query: 266 NDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADF 324
++ + F++ LP+ K G+GK T L G T ++ + + L F +
Sbjct: 180 DE---ALEFLAKLPVEKFHGVGKATVPKLH-ALGFFTGGDLQKADPVDLAERFGIYGWEL 235
Query: 325 FLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLY------RKLAEIAEMLSADMQK 378
F G+ ++ R RKS+ ERT+ LLY +L +I++ +S +++
Sbjct: 236 FQKAN-GIHNSKVKNHRERKSVGKERTYG-----KLLYLPDDIKAELIKISKQVSESLKR 289
Query: 379 EGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKA---ELPVSLRLIGL 435
L+G + LKL+ + F T+ ++ + + S EDI + A + + + + +RL+G+
Sbjct: 290 HQLKGNIIILKLRYSDFTTLTKRKSMVENLDSPEDIAEAARQIFEEIDYDESLGVRLLGV 349
Query: 436 RVTQFNEDK 444
V+ F K
Sbjct: 350 TVSGFGVQK 358
>sp|Q1JK63|DPO4_STRPC DNA polymerase IV OS=Streptococcus pyogenes serotype M12 (strain
MGAS9429) GN=dinB PE=3 SV=1
Length = 364
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 207/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE N +LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNLALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY + R++F +Y S+DEAYLD+T +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYLDVTN--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>sp|Q1JA16|DPO4_STRPB DNA polymerase IV OS=Streptococcus pyogenes serotype M12 (strain
MGAS2096) GN=dinB PE=3 SV=1
Length = 364
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 207/368 (56%), Gaps = 43/368 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
D SR +H+DMDAF+AAVE N +LKGKP+ +G ++ T NYEAR++G+ +
Sbjct: 9 DTSRKIIHIDMDAFFAAVEERDNLALKGKPVVIGKDPRETGGRGVVSTCNYEARKYGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY + R++F +Y S+DEAYLD+T +
Sbjct: 69 AMSSKEAYERCPKAIFISGNYEKYRTVGEQIRRIFKRYTDVVEPMSIDEAYLDVTN--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ +++E GLTCSAGV+ N+ LAK+ SD KP+G VL D +
Sbjct: 127 LGIKSAVKIAKLIQHDIWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKED---AL 183
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
F++ LPI K G+GK + L D+ GI T +++L AV + D F G L
Sbjct: 184 CFLAKLPIEKFHGVGKKSVEKLHDM-GIYTGQDLL-------AVPEMTLIDHFGRFGFDL 235
Query: 333 -----GSTNTP--QARFRKSISSERTFSVTEDKALLYRKL---AEI---AEMLSADMQKE 379
G +N+P R RKSI SERT++ LLY++ AEI A+ ++A +Q
Sbjct: 236 YRKARGISNSPVKSDRIRKSIGSERTYA-----KLLYQETDIKAEISKNAKRVAALLQDH 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G+T+ LK++ A F T+ VTL + ++ I + A + +E P +RL+G+ +
Sbjct: 291 KKLGKTIVLKVRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM 350
Query: 438 TQFNEDKV 445
T EDKV
Sbjct: 351 TNL-EDKV 357
>sp|B8FBE8|DPO4_DESAA DNA polymerase IV OS=Desulfatibacillum alkenivorans (strain AK-01)
GN=dinB PE=3 SV=1
Length = 396
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 127/342 (37%), Positives = 192/342 (56%), Gaps = 16/342 (4%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKL 164
+HVDMDAFYA+VE L NP L+G+ + VG S ++C+A+YEAR GVR+AMP ARKL
Sbjct: 7 IHVDMDAFYASVELLDNPELRGQCVIVGGASNRGVVCSASYEARALGVRSAMPIVTARKL 66
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 224
CP +F+P +Y S ++F +Y P SLDEA++D+T R G SG EIA
Sbjct: 67 CPRGVFLPVRRARYQEISRKVFEIFHQYTPLVEPISLDEAFMDVTSSTRLFG-SGEEIAA 125
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 284
+R + G+T SAG+A N+L+AK+ SD+ KPNG V+P D+ F+ LPI ++
Sbjct: 126 NIRRQIESSLGITASAGIAKNKLVAKIASDLCKPNGLLVVPADQ--TQEFLDPLPISRLW 183
Query: 285 GIGKVTEHILRDVFGINTCEEMLQ-KGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFR 343
G+G + + L G+ T ++ + +L A F + + + G+
Sbjct: 184 GVGPASRNKLIS-LGVKTIRDVRKLTQEMLSANFGRN-GEVIYAFARGMDDRPVEPPGAA 241
Query: 344 KSISSERTFS---VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTR 400
KSI E TF T ++A Y+ + ++E ++ M+KE GRT+ +K+K A F TR
Sbjct: 242 KSIGREITFDRNVYTLEEA--YKWMLFLSERVARRMRKEEATGRTVNIKVKYADFIQVTR 299
Query: 401 AVTLQKYISSSEDILKHASVLLKAELPVS--LRLIGLRVTQF 440
+VTL+ +I HA LL+ L S +RL+G+ ++Q
Sbjct: 300 SVTLESPTDDPGEIYTHAKKLLQKTLVGSKAVRLLGVTLSQL 341
>sp|A4VZ21|DPO4_STRS2 DNA polymerase IV OS=Streptococcus suis (strain 98HAH33) GN=dinB
PE=3 SV=1
Length = 355
Score = 196 bits (498), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 202/364 (55%), Gaps = 42/364 (11%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRA 154
DLSR +HVDMDAF+AA+E +P+LKGKP+ +G ++ T NYEAR FG+ +
Sbjct: 9 DLSRKIIHVDMDAFFAAIEVRDSPALKGKPVIIGADPRLSGGRGVVSTCNYEARAFGIHS 68
Query: 155 AMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE 214
AM A + CP+ IF+ ++ KY R++F +Y S+DEAYLD+TE +
Sbjct: 69 AMSSKEAYERCPQAIFISGNYEKYQEVGRQVREIFHRYTDLVEPMSIDEAYLDVTE--NK 126
Query: 215 RGI-SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVM 272
GI S ++IA+ ++ ++ E LT SAGV+ N+ LAK+ SD+ KP+G +LP D + ++
Sbjct: 127 LGISSAVKIAKLIQYDIWNELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGIL 186
Query: 273 TFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGL 332
+SLP+ K G+GK T L ++ G+ T +++L ++ D F G L
Sbjct: 187 ---ASLPVEKFHGVGKKTVERLHEM-GVYTGQDLLDVPEMVL-------IDRFGRFGFDL 235
Query: 333 -----GSTNTPQA--RFRKSISSERTFSVTEDKALLYR------KLAEIAEMLSADMQKE 379
G +N+P R RKS ERT+ + LLYR +L + + ++A +++
Sbjct: 236 YRKARGISNSPVKVDRVRKSSGKERTY-----RKLLYREEDVLKELISLCQRVAASLKRN 290
Query: 380 GLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRV 437
G +GRT+ LK++ F T+ +L+ Y +E I K L++ ++ +RL+G+ V
Sbjct: 291 GKKGRTIVLKVRYGDFSTLTKRHSLEVYTDQTETIEKEVRQLIEEIGKIEKGIRLLGVTV 350
Query: 438 TQFN 441
T F
Sbjct: 351 TNFQ 354
>sp|Q98NW7|DPO43_RHILO DNA polymerase IV 3 OS=Rhizobium loti (strain MAFF303099) GN=dinB3
PE=3 SV=1
Length = 361
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 137/348 (39%), Positives = 193/348 (55%), Gaps = 19/348 (5%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTA---NYEARRFGVRAAMPGFIA 161
R +HVDMDAFYA+VE NP L+GKP+AVG + +YEAR FGVR+AMP A
Sbjct: 10 RKIIHVDMDAFYASVEQRDNPELRGKPLAVGGAAARGVVAAASYEARAFGVRSAMPSVTA 69
Query: 162 RKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIE 221
++ CPELIFVP F Y S R VF ++ SLDEAYLD+T+ R S
Sbjct: 70 KRKCPELIFVPPRFDVYRAVSAQIRDVFAEHTDLIEPLSLDEAYLDVTQ-NRLNISSATT 128
Query: 222 IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFISSLPI 280
IAE +R + E GLT SAG++ N+ LAK+ SD NKPNGQFV+ P A F+ +LP+
Sbjct: 129 IAEMIRAKILEVTGLTASAGISYNKFLAKMASDQNKPNGQFVITPRHGPA---FVETLPV 185
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQ 339
K G+G T + + GI T ++ ++ S L F S ++ + +
Sbjct: 186 NKFHGVGPATAAKM-EALGIETGADLKERSLSFLQQHFGKSGL-WYYQIARAIDERAVDP 243
Query: 340 ARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADM---QKEGLRGRTLTLKLKTASFE 396
R RKSI +E TF+ D L LAE+ +++ + +G+RGRT+TLK+K A F+
Sbjct: 244 DRPRKSIGAEDTFAA--DIVDLETSLAELKPLVAKVWGYCEGKGIRGRTVTLKIKFADFQ 301
Query: 397 VRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQFNE 442
TR+ T+ I S D A+ LL + PV +RL+G+ ++ +
Sbjct: 302 QITRSRTVAVPIELS-DFEHLAADLLGSVFPVRKGIRLLGVTLSSLGD 348
>sp|A1WY69|DPO4_HALHL DNA polymerase IV OS=Halorhodospira halophila (strain DSM 244 /
SL1) GN=dinB PE=3 SV=1
Length = 356
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 127/351 (36%), Positives = 186/351 (52%), Gaps = 16/351 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT----MSMICTANYEARRFGVRAAMPGFI 160
R +H+DMDAFYA+VE +PSL+G+P+ VG ++ A+YEAR FG+R+A P
Sbjct: 4 RKIIHIDMDAFYASVEQRDDPSLRGQPVVVGGSPEGRGVVAAASYEARAFGIRSAQPAAW 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
AR+ CPE IF+ F +Y S +F + SLDEAYLD+T R RG S
Sbjct: 64 ARRRCPEAIFLRPRFDRYRAISRQIHGIFADFATTIEPLSLDEAYLDVTGSQRFRG-SAT 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+A+ +R + EE GLT SAGV+ N+LLAK+ SD KP+G +V+P + ++++ PI
Sbjct: 123 HMAQAIRRRIREETGLTASAGVSYNKLLAKLASDEGKPDGLYVVPPEDGP--AYVAAQPI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQA 340
R++ G+G T L + GI ++L VF + A G+
Sbjct: 181 RRLHGVGPATAARL-ERLGIRQVGDLLDWELADLHVFLGNRAGTLHDAARGIDHRPVRPR 239
Query: 341 RFRKSISSERTFS-VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRT 399
R RKSI +ERTF T D ++++LA + ++ ++ L RT+TLKL+ A FE T
Sbjct: 240 RSRKSIGAERTFGDDTRDLGEIHQRLAPLITKVATRLEHHELVARTVTLKLRYADFESIT 299
Query: 400 RAVTLQKYISSSEDILKHASVLL----KAELPVSL---RLIGLRVTQFNED 443
R V+ ++ + DI LL PV L L GL+ Q +D
Sbjct: 300 RRVSPPGPVAQAADIEALIPALLAETEAGSRPVRLLGVSLSGLQPKQREQD 350
>sp|B0TZS5|DPO4_FRAP2 DNA polymerase IV OS=Francisella philomiragia subsp. philomiragia
(strain ATCC 25017) GN=dinB PE=3 SV=1
Length = 350
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 195/347 (56%), Gaps = 27/347 (7%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGF 159
+R +H+DMD F+A VE +NPSLK KP AVG + +I T NY AR +GVR+AMP
Sbjct: 4 TRKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGVRSAMPTA 63
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISG 219
IA + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E S
Sbjct: 64 IAMQKCPNLILLNTDFAKYKATSAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEYKNSA 122
Query: 220 IEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP 279
IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ ++ V +F+ LP
Sbjct: 123 TLIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVITPEQ--VDSFVKDLP 180
Query: 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV-----FSHSTADFFLSVGLGLGS 334
++K+ G+GKV++ L+++ + TC + LQ+ SL V F S ++ G+ +
Sbjct: 181 VKKLFGVGKVSQEKLKNM-NVETCLD-LQQLSLATLVDKFGKFGSSLYNY----ARGIDN 234
Query: 335 TNTPQARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLKL 390
R RKS+S E T+ ED L KL + L++ M +E + + +K
Sbjct: 235 REVNPVRIRKSVSVENTY--LEDLKTLEACLEKLPNLYNKLTSRMTEEHYKSIIGIVVKF 292
Query: 391 KTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 437
F +T + K + + +LK+ + L + +RLIG+ +
Sbjct: 293 TDTKFN-KTSLTRVAKTL--DKKVLKNLIIELHQKQNYHIRLIGIGI 336
>sp|Q2A3L2|DPO4_FRATH DNA polymerase IV OS=Francisella tularensis subsp. holarctica
(strain LVS) GN=dinB PE=3 SV=1
Length = 349
Score = 194 bits (492), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 195/343 (56%), Gaps = 21/343 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE +NPSLK KP AVG + +I T NY AR +GVR+AMP I
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGVRSAMPTAI 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E S
Sbjct: 65 AMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEYKNSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+ LP+
Sbjct: 124 LIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQ--VDSFVKDLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLGSTNTP 338
+K+ G+GKV++ L+ + G+ TC + LQ+ SL V F + + + G+ +
Sbjct: 182 KKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGIDNREVN 238
Query: 339 QARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLKLKTAS 394
R RKS+S E T+ ED L KL + + L++ M +E + + +K
Sbjct: 239 PVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHYKSIIGIVVKFTDTK 296
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 437
F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 297 FN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>sp|A7NC07|DPO4_FRATF DNA polymerase IV OS=Francisella tularensis subsp. holarctica
(strain FTNF002-00 / FTA) GN=dinB PE=3 SV=1
Length = 349
Score = 194 bits (492), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 195/343 (56%), Gaps = 21/343 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE +NPSLK KP AVG + +I T NY AR +GVR+AMP I
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGVRSAMPTAI 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E S
Sbjct: 65 AMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEYKNSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+ LP+
Sbjct: 124 LIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQ--VDSFVKDLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLGSTNTP 338
+K+ G+GKV++ L+ + G+ TC + LQ+ SL V F + + + G+ +
Sbjct: 182 KKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGIDNREVN 238
Query: 339 QARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLKLKTAS 394
R RKS+S E T+ ED L KL + + L++ M +E + + +K
Sbjct: 239 PVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHYKSIIGIVVKFTDTK 296
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 437
F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 297 FN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>sp|A0AK80|DPO4_LISW6 DNA polymerase IV OS=Listeria welshimeri serovar 6b (strain ATCC
35897 / DSM 20650 / SLCC5334) GN=dinB PE=3 SV=1
Length = 356
Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 194/351 (55%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVL-PNDRMAVMTFI 275
S +A +++ ++Y E GLT SAGV+ N+ +AK+ SD KP G V+ P + A F+
Sbjct: 120 KSATMVARDIQQTIYHELGLTASAGVSFNKFIAKIASDFKKPAGMTVVAPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYHLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L + A+ + A + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDSRILEQSLMQFAKKVEARLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDANQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>sp|Q0BM23|DPO4_FRATO DNA polymerase IV OS=Francisella tularensis subsp. holarctica
(strain OSU18) GN=dinB PE=3 SV=1
Length = 349
Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 195/343 (56%), Gaps = 21/343 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE +NPSLK KP AVG + +I T NY AR +GVR+AMP I
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGVRSAMPTAI 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E S
Sbjct: 65 AMQKCPNLILLNTDFAKYKAASAVIRDIFYYFTDKVEPLSLDEAYLDVTDV-KEYKNSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+ LP+
Sbjct: 124 LIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQ--VDSFVKDLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLGSTNTP 338
+K+ G+GKV++ L+ + G+ TC + LQ+ SL V F + + + G+ +
Sbjct: 182 KKLFGVGKVSQEKLKSM-GVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGIDNREVN 238
Query: 339 QARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLKLKTAS 394
R RKS+S E T+ ED L KL + + L++ M +E + + +K
Sbjct: 239 PVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRMTEEHYKSIIGIVVKFTDTK 296
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 437
F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 297 FN-KTSLTRVAKIL--DKEMLKNLIIELHQKRNHPIRLIGIGV 336
>sp|P58964|DPO4_STAAW DNA polymerase IV OS=Staphylococcus aureus (strain MW2) GN=dinB
PE=3 SV=1
Length = 356
Score = 192 bits (488), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 192/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDILMTLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI ++ +K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>sp|Q6G838|DPO4_STAAS DNA polymerase IV OS=Staphylococcus aureus (strain MSSA476) GN=dinB
PE=3 SV=1
Length = 356
Score = 192 bits (488), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 192/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDILMTLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI ++ +K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>sp|A6QIC3|DPO4_STAAE DNA polymerase IV OS=Staphylococcus aureus (strain Newman) GN=dinB
PE=3 SV=1
Length = 356
Score = 192 bits (488), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 192/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDILMTLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI ++ +K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>sp|Q5HEM7|DPO4_STAAC DNA polymerase IV OS=Staphylococcus aureus (strain COL) GN=dinB
PE=3 SV=1
Length = 356
Score = 192 bits (488), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 192/347 (55%), Gaps = 15/347 (4%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE NP LKGKP+ VG + ++ TA+YEAR++GV +AMP
Sbjct: 4 RRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQ 63
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A KLCP FV ++F Y S +F Y SLDEAYLDITE+ R +
Sbjct: 64 AHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRP-DLPAS 122
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
+IA+ +R + E+ LT SAGV+ N+ LAK+ S +NKP+G V+ D V + +L I
Sbjct: 123 KIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVI--DYQNVHDILMTLDI 180
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSL-LCAVFSHSTADFFLSVGLGLGSTNTPQ 339
G+GK ++ ++ D GI ++ +K L +F + + G+ +
Sbjct: 181 GDFPGVGKASKKVMHDN-GIFNGRDLYEKTEFELIRLFGKRGRGLY-NKARGIDHSEVKS 238
Query: 340 ARFRKSISSERTFS--VTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397
+R RKS+ +ERTF+ V +D+ +L RK+ E++ + + K +T+T+K+KT FE
Sbjct: 239 SRVRKSVGTERTFATDVNDDEEIL-RKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFET 297
Query: 398 RTRAVTLQKYISSSEDILKHASVLLK--AELPVSLRLIGLRVTQFNE 442
++ ++L+ +SS EDI A +L + V +RLIG+ V +
Sbjct: 298 LSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQ 344
>sp|Q71Y46|DPO4_LISMF DNA polymerase IV OS=Listeria monocytogenes serotype 4b (strain
F2365) GN=dinB PE=3 SV=1
Length = 356
Score = 192 bits (487), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 193/351 (54%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYHLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDTSQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>sp|C1KWR9|DPO4_LISMC DNA polymerase IV OS=Listeria monocytogenes serotype 4b (strain
CLIP80459) GN=dinB PE=3 SV=1
Length = 356
Score = 192 bits (487), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 193/351 (54%), Gaps = 21/351 (5%)
Query: 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG----TMSMICTANYEARRFGVRAAMP 157
D SR +H+DMDAFYA+VE +P +GKP+ +G ++ T +YEAR+FGV +AMP
Sbjct: 2 DTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVVATCSYEARKFGVHSAMP 61
Query: 158 GFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI 217
A KLCP IF+ + Y S+ R++F +Y SLDEAYLD+TE ++G+
Sbjct: 62 TRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEPLSLDEAYLDVTE--NKKGM 119
Query: 218 -SGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNG-QFVLPNDRMAVMTFI 275
S +A E++ ++Y+E GLT SAGV+ N+ +AK+ SD KP G V P + A F+
Sbjct: 120 KSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKKPAGITVVTPEEAEA---FL 176
Query: 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGS---LLCAVFSHSTADFFLSVGLGL 332
+P+ K G+GKVT L + GI T + L+K S L+ + H + G
Sbjct: 177 EQIPVTKFYGVGKVTAEKLHRL-GIETGAD-LKKWSEWDLIRELHKHGYHLYRHVRGRSN 234
Query: 333 GSTNTPQARFRKSISSERTFSVTE-DKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLK 391
N P R RKS+ E TF D +L + L + A+ + + K G+T+ LKL+
Sbjct: 235 NIVN-PH-RDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEERLIKLQKHGKTVVLKLR 292
Query: 392 TASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPV--SLRLIGLRVTQF 440
+ F T+ +TL +Y + + I + A++LL+ S+RLIGL VT
Sbjct: 293 YSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIRLIGLTVTNL 343
>sp|B2SH34|DPO4_FRATM DNA polymerase IV OS=Francisella tularensis subsp. mediasiatica
(strain FSC147) GN=dinB PE=3 SV=1
Length = 349
Score = 192 bits (487), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 128/343 (37%), Positives = 194/343 (56%), Gaps = 21/343 (6%)
Query: 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMS----MICTANYEARRFGVRAAMPGFI 160
R +H+DMD F+A VE +NPSLK KP AVG + +I T NY AR +GVR+AMP I
Sbjct: 5 RKIIHIDMDYFFAQVEEKANPSLKDKPFAVGGTNPKRGVISTCNYIAREYGVRSAMPTAI 64
Query: 161 ARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGI 220
A + CP LI + TDF KY S + R +F + SLDEAYLD+T+V +E S
Sbjct: 65 AMQKCPNLILLNTDFAKYKAASAVIRDIFYSFTDKVEPLSLDEAYLDVTDV-KEYKNSAT 123
Query: 221 EIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPI 280
IA+ ++ ++ + GLT SAGVAPN+LLAK+ SDINKPNG +V+ + V +F+ LP+
Sbjct: 124 LIAQAIKQEIFNKTGLTGSAGVAPNKLLAKIASDINKPNGLYVVTPKQ--VDSFVKDLPV 181
Query: 281 RKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAV--FSHSTADFFLSVGLGLGSTNTP 338
+K+ G+GKV++ L+ G+ TC + LQ+ SL V F + + + G+ +
Sbjct: 182 KKLFGVGKVSQEKLKST-GVETCLD-LQQLSLATLVDKFGKFGSSLY-NYARGIDNREVN 238
Query: 339 QARFRKSISSERTFSVTEDKALL---YRKLAEIAEMLSADMQKEGLRGRT-LTLKLKTAS 394
R RKS+S E T+ ED L KL + + L++ + +E + + +K
Sbjct: 239 PVRIRKSVSVENTY--LEDLKTLGACLEKLPSLYDKLTSRITEEHYKSIIGIVVKFTDTK 296
Query: 395 FEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRV 437
F +T + K + +++LK+ + L + +RLIG+ V
Sbjct: 297 FN-KTSLTRVAKIL--DKEMLKNLIIELHQKQNHPIRLIGIGV 336
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 246,724,816
Number of Sequences: 539616
Number of extensions: 10455400
Number of successful extensions: 29689
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 28583
Number of HSP's gapped (non-prelim): 326
length of query: 677
length of database: 191,569,459
effective HSP length: 124
effective length of query: 553
effective length of database: 124,657,075
effective search space: 68935362475
effective search space used: 68935362475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)