Query 005785
Match_columns 677
No_of_seqs 358 out of 1593
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 07:22:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pzp_A DNA polymerase kappa; D 100.0 1E-103 5E-108 886.6 47.2 422 22-444 7-509 (517)
2 1t94_A Polymerase (DNA directe 100.0 3.8E-82 1.3E-86 705.0 34.5 371 73-444 2-453 (459)
3 3gqc_A DNA repair protein REV1 100.0 1.4E-76 4.9E-81 663.1 40.2 339 103-444 86-499 (504)
4 1jx4_A DNA polymerase IV (fami 100.0 2.6E-76 8.9E-81 637.1 32.3 331 105-443 1-343 (352)
5 4dez_A POL IV 1, DNA polymeras 100.0 4.7E-77 1.6E-81 643.8 25.8 336 103-444 1-347 (356)
6 3bq0_A POL IV, DBH, DNA polyme 100.0 6.8E-76 2.3E-80 634.3 32.6 331 105-444 1-345 (354)
7 4f4y_A POL IV, DNA polymerase 100.0 1.7E-75 5.9E-80 633.0 33.0 330 106-444 2-345 (362)
8 3osn_A DNA polymerase IOTA; ho 100.0 1.7E-74 5.7E-79 636.2 37.0 343 99-444 22-417 (420)
9 2aq4_A DNA repair protein REV1 100.0 2.4E-73 8.2E-78 630.0 32.8 368 63-442 16-433 (434)
10 4ecq_A DNA polymerase ETA; tra 100.0 2.2E-71 7.5E-76 614.2 36.2 336 101-442 6-434 (435)
11 3mfi_A DNA polymerase ETA; DNA 100.0 4.9E-71 1.7E-75 621.8 34.8 341 101-444 27-517 (520)
12 1im4_A DBH; DNA polymerase PAL 100.0 4.1E-59 1.4E-63 472.6 19.3 207 104-314 5-220 (221)
13 1unn_C POL IV, DNA polymerase 99.4 2.7E-12 9.3E-17 116.3 12.2 98 344-444 5-107 (115)
14 2i5o_A DNA polymerase ETA; zin 99.0 9.2E-11 3.2E-15 85.7 0.6 36 584-622 4-39 (39)
15 3mab_A Uncharacterized protein 94.2 0.053 1.8E-06 47.0 5.1 49 279-328 5-58 (93)
16 3bqs_A Uncharacterized protein 94.0 0.044 1.5E-06 47.6 4.2 31 279-310 5-35 (93)
17 1wcn_A Transcription elongatio 93.2 0.064 2.2E-06 44.0 3.7 50 280-330 9-61 (70)
18 1z3e_B DNA-directed RNA polyme 89.3 0.5 1.7E-05 39.0 5.2 50 275-326 6-58 (73)
19 2a1j_A DNA repair endonuclease 84.3 1.2 4.1E-05 35.4 4.7 47 280-328 6-54 (63)
20 1qw2_A Conserved hypothetical 84.2 0.45 1.5E-05 41.7 2.2 27 138-164 74-100 (102)
21 3gfk_B DNA-directed RNA polyme 83.0 0.94 3.2E-05 38.0 3.6 50 275-326 13-65 (79)
22 1z00_B DNA repair endonuclease 83.0 1.1 3.6E-05 38.0 4.0 47 280-328 20-68 (84)
23 3k4g_A DNA-directed RNA polyme 82.6 2.1 7.1E-05 36.5 5.7 50 276-327 10-62 (86)
24 1ci4_A Protein (barrier-TO-aut 81.6 0.99 3.4E-05 38.6 3.3 33 275-308 15-47 (89)
25 1coo_A RNA polymerase alpha su 77.9 1.4 4.9E-05 38.4 3.2 48 277-326 23-73 (98)
26 1b22_A DNA repair protein RAD5 72.1 1.1 3.7E-05 40.2 1.0 53 277-330 22-79 (114)
27 1kft_A UVRC, excinuclease ABC 71.1 3 0.0001 34.2 3.4 48 277-326 23-73 (78)
28 1z00_A DNA excision repair pro 66.8 6.4 0.00022 33.0 4.6 47 280-328 21-70 (89)
29 2a1j_B DNA excision repair pro 65.7 5.8 0.0002 33.5 4.2 47 280-328 34-83 (91)
30 1pzn_A RAD51, DNA repair and r 65.0 5 0.00017 42.3 4.5 42 276-318 33-75 (349)
31 3im1_A Protein SNU246, PRE-mRN 64.4 5.5 0.00019 41.6 4.6 41 277-318 156-197 (328)
32 1gm5_A RECG; helicase, replica 63.9 2.3 7.9E-05 50.0 1.8 31 278-309 115-145 (780)
33 2fmp_A DNA polymerase beta; nu 62.6 3.8 0.00013 43.3 2.9 29 280-309 100-128 (335)
34 2i1q_A DNA repair and recombin 61.5 5.1 0.00017 41.3 3.7 39 279-318 4-43 (322)
35 2kz3_A Putative uncharacterize 61.4 7.9 0.00027 32.6 4.1 44 276-320 2-46 (83)
36 2q0z_X Protein Pro2281; SEC63, 61.1 10 0.00035 39.7 6.0 40 278-318 161-201 (339)
37 2bcq_A DNA polymerase lambda; 60.7 4.7 0.00016 42.6 3.2 28 281-309 99-126 (335)
38 2va8_A SSO2462, SKI2-type heli 60.5 4.8 0.00017 46.2 3.6 48 278-327 657-705 (715)
39 1vq8_Y 50S ribosomal protein L 60.2 1.8 6.3E-05 43.7 0.0 47 278-325 15-64 (241)
40 2p6r_A Afuhel308 helicase; pro 57.9 6.6 0.00023 45.1 4.1 51 278-329 632-682 (702)
41 2zj8_A DNA helicase, putative 57.8 8.2 0.00028 44.4 4.9 51 277-328 645-698 (720)
42 2ihm_A POL MU, DNA polymerase 56.6 5 0.00017 42.8 2.6 28 280-308 104-131 (360)
43 1jms_A Terminal deoxynucleotid 55.2 6.5 0.00022 42.2 3.2 28 280-308 123-150 (381)
44 2nrt_A Uvrabc system protein C 55.0 9.8 0.00034 37.8 4.3 48 278-327 168-217 (220)
45 2lvt_A Zinc finger and BTB dom 56.0 3.3 0.00011 25.7 0.0 24 589-614 2-25 (29)
46 2lvr_A Zinc finger and BTB dom 55.7 3.4 0.00011 25.7 0.0 25 589-615 3-27 (30)
47 2m0e_A Zinc finger and BTB dom 47.8 3.6 0.00012 25.1 -0.2 14 589-602 2-15 (29)
48 1znf_A 31ST zinc finger from X 46.3 6.6 0.00022 23.7 0.9 12 590-601 2-13 (27)
49 2z43_A DNA repair and recombin 46.2 4.2 0.00014 42.2 0.0 40 278-318 12-52 (324)
50 1x2i_A HEF helicase/nuclease; 44.8 14 0.00047 29.3 2.9 46 280-327 16-64 (75)
51 2duy_A Competence protein come 44.6 9.7 0.00033 30.8 2.0 31 280-310 29-59 (75)
52 2m0f_A Zinc finger and BTB dom 40.2 4 0.00014 25.0 -0.9 13 589-601 2-14 (29)
53 2elr_A Zinc finger protein 406 39.7 9.9 0.00034 24.7 1.1 13 589-601 9-21 (36)
54 2lvu_A Zinc finger and BTB dom 45.7 6.2 0.00021 23.7 0.0 13 589-601 2-14 (26)
55 1dgs_A DNA ligase; AMP complex 39.4 29 0.00098 40.0 5.5 47 279-325 442-491 (667)
56 1klr_A Zinc finger Y-chromosom 38.2 10 0.00035 23.1 0.9 14 589-602 2-15 (30)
57 2kvh_A Zinc finger and BTB dom 38.1 6.7 0.00023 23.8 -0.0 13 589-601 3-15 (27)
58 3tvk_A DGC, diguanylate cyclas 37.9 53 0.0018 31.0 6.3 61 180-243 58-129 (179)
59 1paa_A Yeast transcription fac 37.5 11 0.00036 23.2 0.9 14 589-602 2-15 (30)
60 1ard_A Yeast transcription fac 36.9 11 0.00038 22.8 0.9 13 589-601 2-14 (29)
61 3lda_A DNA repair protein RAD5 36.3 25 0.00086 37.8 4.2 46 274-320 77-125 (400)
62 2owo_A DNA ligase; protein-DNA 35.7 22 0.00077 40.9 3.8 48 279-326 447-497 (671)
63 2kvf_A Zinc finger and BTB dom 35.7 7.7 0.00026 23.6 -0.0 13 589-601 3-15 (28)
64 2m0d_A Zinc finger and BTB dom 33.3 8.7 0.0003 23.4 -0.1 13 589-601 3-15 (30)
65 2kvg_A Zinc finger and BTB dom 32.2 8 0.00027 23.6 -0.4 12 589-600 3-14 (27)
66 2qt7_A Receptor-type tyrosine- 30.7 2.1E+02 0.0071 24.4 8.0 65 179-245 20-90 (91)
67 1rim_A E6APC2 peptide; E6-bind 30.5 16 0.00055 23.6 0.9 13 589-601 2-14 (33)
68 2elx_A Zinc finger protein 406 30.0 11 0.00037 24.3 -0.0 13 589-601 7-19 (35)
69 1rik_A E6APC1 peptide; E6-bind 29.9 11 0.00038 22.9 -0.0 14 589-602 2-15 (29)
70 2els_A Zinc finger protein 406 29.4 12 0.00041 24.4 0.1 12 589-600 9-20 (36)
71 4hti_A Receptor-type tyrosine- 29.2 2E+02 0.0069 24.9 7.8 65 178-244 26-96 (99)
72 1p7a_A BF3, BKLF, kruppel-like 29.1 16 0.00054 23.9 0.7 13 589-601 11-23 (37)
73 2elm_A Zinc finger protein 406 27.8 12 0.00041 24.8 -0.1 13 589-601 9-21 (37)
74 1srk_A Zinc finger protein ZFP 27.7 12 0.00041 24.2 -0.1 12 589-600 7-18 (35)
75 2w9m_A Polymerase X; SAXS, DNA 27.7 29 0.001 39.1 3.0 45 280-325 99-147 (578)
76 2elo_A Zinc finger protein 406 27.4 14 0.00048 24.1 0.2 13 589-601 9-21 (37)
77 2elt_A Zinc finger protein 406 27.2 13 0.00045 24.1 -0.0 13 589-601 9-21 (36)
78 2kfq_A FP1; protein, de novo p 26.2 14 0.0005 23.6 0.1 12 589-600 2-13 (32)
79 2elv_A Zinc finger protein 406 26.0 14 0.00048 24.1 -0.0 12 589-600 9-20 (36)
80 2eom_A ZFP-95, zinc finger pro 26.0 23 0.00077 24.7 1.1 13 589-601 12-24 (46)
81 4f92_B U5 small nuclear ribonu 25.0 35 0.0012 43.7 3.2 41 277-318 1556-1597(1724)
82 2emz_A ZFP-95, zinc finger pro 25.0 22 0.00076 24.6 0.9 13 589-601 12-24 (46)
83 3ign_A Diguanylate cyclase; gg 24.8 1.4E+02 0.0048 26.7 6.7 63 179-244 63-136 (177)
84 3vdp_A Recombination protein R 24.7 24 0.00081 34.8 1.3 16 280-295 28-43 (212)
85 2elq_A Zinc finger protein 406 24.4 16 0.00054 23.8 -0.0 13 589-601 9-21 (36)
86 4rxn_A Rubredoxin; electron tr 23.8 22 0.00075 27.5 0.7 10 588-597 35-44 (54)
87 2yte_A Zinc finger protein 473 23.8 25 0.00084 23.6 0.9 13 589-601 10-22 (42)
88 2elp_A Zinc finger protein 406 23.5 17 0.00059 23.7 0.0 13 589-601 9-21 (37)
89 2eou_A Zinc finger protein 473 23.0 28 0.00095 23.8 1.1 13 589-601 12-24 (44)
90 1njq_A Superman protein; zinc- 22.8 17 0.0006 24.2 -0.1 12 589-600 6-17 (39)
91 2eos_A B-cell lymphoma 6 prote 22.8 24 0.00083 23.8 0.7 13 589-601 11-23 (42)
92 3h0g_L DNA-directed RNA polyme 22.6 29 0.001 27.7 1.2 22 579-600 11-32 (63)
93 3b0x_A DNA polymerase beta fam 22.4 40 0.0014 38.0 2.7 30 280-309 95-124 (575)
94 3hvw_A Diguanylate-cyclase (DG 22.3 96 0.0033 28.1 5.0 61 181-244 56-125 (176)
95 3hva_A Protein FIMX; ggdef dig 22.2 1.3E+02 0.0044 26.9 5.9 47 195-244 87-141 (177)
96 2yti_A Zinc finger protein 347 21.9 28 0.00096 24.0 0.9 13 589-601 12-24 (46)
97 1v5w_A DMC1, meiotic recombina 21.9 19 0.00065 37.6 0.0 39 279-318 26-67 (343)
98 2em6_A Zinc finger protein 224 21.8 28 0.00097 24.0 0.9 14 588-601 11-24 (46)
99 2en7_A Zinc finger protein 268 21.6 28 0.00097 23.6 0.9 13 589-601 12-24 (44)
100 2enf_A Zinc finger protein 347 21.6 29 0.00099 23.9 0.9 13 589-601 12-24 (46)
101 2yth_A Zinc finger protein 224 21.6 33 0.0011 23.7 1.3 13 589-601 12-24 (46)
102 2eq2_A Zinc finger protein 347 21.3 29 0.001 23.9 0.9 13 589-601 12-24 (46)
103 2emg_A Zinc finger protein 484 21.2 30 0.001 23.9 0.9 13 589-601 12-24 (46)
104 2ytb_A Zinc finger protein 32; 21.1 27 0.00093 23.4 0.7 13 589-601 11-23 (42)
105 1vdd_A Recombination protein R 21.0 31 0.0011 34.3 1.3 16 280-295 14-29 (228)
106 2epv_A Zinc finger protein 268 21.0 20 0.00069 24.6 -0.0 12 589-600 12-23 (44)
107 2bgw_A XPF endonuclease; hydro 20.9 55 0.0019 31.7 3.1 46 280-327 164-212 (219)
108 2ep1_A Zinc finger protein 484 20.6 31 0.0011 23.7 0.9 13 589-601 12-24 (46)
No 1
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=100.00 E-value=1.5e-103 Score=886.62 Aligned_cols=422 Identities=50% Similarity=0.811 Sum_probs=399.8
Q ss_pred ceecccccCCCCCcCHHHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHhhcc
Q 005785 22 HTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATR 101 (677)
Q Consensus 22 ~~~~~~~kag~~~~d~~~i~~ii~~~skgs~~~~~e~~~~~~~~~ri~~~~~~~~~l~~~~~~~~~~~~d~~~~~le~~r 101 (677)
...++++||||+||||+|||+||||+||||+||+||+||++++++||++|+++++++++.++.+++..+|+++++||++|
T Consensus 7 ~~~~~~~kag~~~~d~~~i~~ii~~~s~gs~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~r 86 (517)
T 3pzp_A 7 HMGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSR 86 (517)
T ss_dssp -------CCSCCSCCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCccccccccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCchhhhcccccCCCCCCCcEEEecCCeEEecCHHHHHcCCCCCCcHHHHHHhCCCcEEeCCChHHHHHH
Q 005785 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYY 181 (677)
Q Consensus 102 d~~r~I~HIDmDaFyAsVE~~~~PeLr~kPvAV~~~~~V~taNY~ARk~GVr~GMp~~~AkkLCP~Lvvvp~d~~~Y~~~ 181 (677)
|++|+|+||||||||||||++++|+|+++||||+++++|+||||+||+|||++|||+++|++|||+|++||+||+.|+++
T Consensus 87 ~~~r~I~hiDmDaFYAsvE~~~~P~Lr~kPvaV~~~~vV~t~nYeAR~~GVr~gMp~~~Ak~lCP~Lvvv~~d~~~Y~~~ 166 (517)
T 3pzp_A 87 NLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAV 166 (517)
T ss_dssp CCSCCEEEEEESSHHHHHHHHHCGGGTTSCEEEEETTEEEEECHHHHTTTCCTTSCHHHHHHHCTTCEEECCCHHHHHHH
T ss_pred CcCcEEEEEecCcHHHHHHHHhCccccCCcEEEecCCEEEecCHHHHHcCCCCCCcHHHHHHhCCceEEECCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEeccCceEEecchhh-------------------------------------------------
Q 005785 182 SDLTRKVFCKYDPNFMAASLDEAYLDITEVC------------------------------------------------- 212 (677)
Q Consensus 182 s~~i~~il~~y~p~ve~~SiDEa~LDlT~~~------------------------------------------------- 212 (677)
|.+|+.||.+|+|+||++||||+|||||+++
T Consensus 167 S~~v~~il~~ytp~ve~~SiDEafLDvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (517)
T 3pzp_A 167 SKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDNPGKEVNKLSEHERSISPLLFEESP 246 (517)
T ss_dssp HHHHHHHHHTTCTTCBCCSSSEEEEETHHHHHHHTSCCSTTTEEECC---------------------------------
T ss_pred HHHHHHHHHHcCCcEEEECCceEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999985
Q ss_pred --------------------------hhcCCCHHHHHHHHHHHHHHHhCCeeEEEecCCHHHHHHHhcccCCCCeEEecC
Q 005785 213 --------------------------RERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 266 (677)
Q Consensus 213 --------------------------~~~g~~~~~la~~IR~~I~~~tGlt~S~GIA~NklLAKLaS~~~KPnGq~~l~~ 266 (677)
++||.++.++|++||++|+++||||||||||+||+||||||+++||||++++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfg~~~~~ia~~IR~~I~~~tGlt~S~GIA~Nk~LAKlAs~~~KP~G~~vl~~ 326 (517)
T 3pzp_A 247 SDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILP 326 (517)
T ss_dssp -----------------------CCEEECCSSHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHTTCSSCEEECCS
T ss_pred ccccccccccccccccccccccchhhhhcCChHHHHHHHHHHHHHHHhCCeEEEEEcCCHHHHHHHhCcCCCCCEEEecC
Confidence 345646899999999999999999999999999999999999999999999998
Q ss_pred ChhHHHHhhhcCCCccccCCCHHHHHHHHhhcCCCcHHHHHhchHHHHHhcChhHHHHHHHhccCCCCCCCCCCCCCcce
Q 005785 267 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSI 346 (677)
Q Consensus 267 ~~~~i~~fL~~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~~~L~~rFG~~~~~~L~~~a~G~~~~~~~~~~~rKSi 346 (677)
+++++.+||++|||++|||||++++++|++ +||+||+||++++..|.++||...+.+++.+|+|++..++.+..++|||
T Consensus 327 ~~~~v~~fL~~LPV~kl~GIG~~t~~~L~~-lGI~TigDL~~~~~~L~~~fG~~~~~~l~~~a~Gid~~~v~~~~~~KSi 405 (517)
T 3pzp_A 327 NRQAVMDFIKDLPIRKVSGIGKVTEKMLKA-LGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSM 405 (517)
T ss_dssp SHHHHHHHHTTCBGGGSTTCCHHHHHHHHH-TTCCBHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCCSCCCCCCCCCE
T ss_pred ChHHHHHHHhcCChhhhccccHHHHHHHHH-hCCCcHHHHHhhHHHHHHHhChHHHHHHHHHHcCCCcccccCCCCCccc
Confidence 777899999999999999999999999996 9999999999998889999999888888889999999998888899999
Q ss_pred eeeecCCccccHHHHHHHHHHHHHHHHHHHHHhCCcccEEEEEEEEcCCeeeEEEEEcCCCCCCHHHHHHHHHHHHHhhC
Q 005785 347 SSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 426 (677)
Q Consensus 347 s~e~tf~~~~d~~~L~~~L~~La~~L~~rLr~~~l~~rtltLklk~~~f~~~trs~tl~~~t~~~~~L~~~a~~LLe~~l 426 (677)
+.++||+.+.+.+++...|.+|+++|+.+|+++++.+++|+|++++.+|.+.+++++++.|+++.++|+.+|..||++.+
T Consensus 406 ~~e~tf~~~~~~e~l~~~l~~La~~l~~rLr~~~~~~~~vtlklk~~~f~~~tr~~tl~~~t~~~~~i~~~a~~Ll~~~~ 485 (517)
T 3pzp_A 406 SVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEI 485 (517)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHHHHHHHHHTTTCCBSCEEEEEEETTSCEEEECCCCSSCBCSHHHHHHHHHHHHHHHH
T ss_pred eeEEEcccccCHHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEEEecCCceeeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred ------CCCEEEEEEEecCCCcCc
Q 005785 427 ------PVSLRLIGLRVTQFNEDK 444 (677)
Q Consensus 427 ------p~~VRlIGVrls~L~~~~ 444 (677)
|.+||+|||++++|.+..
T Consensus 486 ~~~~~~~~~iRllGV~~s~l~~~~ 509 (517)
T 3pzp_A 486 DADFPHPLRLRLMGVRISSFPNEE 509 (517)
T ss_dssp HHHTTSCCCEEEEEEEECCCCCCC
T ss_pred hhccCCCCcEEEEEEEecCCcChh
Confidence 456999999999999875
No 2
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=100.00 E-value=3.8e-82 Score=704.98 Aligned_cols=371 Identities=51% Similarity=0.822 Sum_probs=339.1
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCchhhhcccccCCCCCCCcEEEecCCeEEecCHHHHHcCC
Q 005785 73 ARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGV 152 (677)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~d~~~~~le~~rd~~r~I~HIDmDaFyAsVE~~~~PeLr~kPvAV~~~~~V~taNY~ARk~GV 152 (677)
+++++|++.++..++..+|+++.+||.+|++.|+|+||||||||||||++++|+|+++||||+++++|+||||+||+|||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~r~i~hiD~D~FyAsvE~~~~P~L~~kPvaV~~~~~V~a~syeAR~~GV 81 (459)
T 1t94_A 2 QQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGV 81 (459)
T ss_dssp --CCCCCTTHHHHHHHHHHHHHHHHHTTCCCSCCEEEEEETTHHHHHHHHHCGGGTTSCEEEECSSCEEEECHHHHHTTC
T ss_pred chhhhcCHHHHHHHHHHHHHHHHHhhhccCCCceEEEEecccHHHHHHHhhCccccCCcEEEccCCeEEecCHHHHHcCC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHhCCCcEEeCCChHHHHHHHHHHHHHHHhcCCceEEeccCceEEecchhhhh------------------
Q 005785 153 RAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRE------------------ 214 (677)
Q Consensus 153 r~GMp~~~AkkLCP~Lvvvp~d~~~Y~~~s~~i~~il~~y~p~ve~~SiDEa~LDlT~~~~~------------------ 214 (677)
++|||+++|++|||+|+++|+|++.|+++|.+|+.||.+|+|.||++||||+|||||++.++
T Consensus 82 ~~gm~~~~A~~lCP~lv~v~~d~~~Y~~~S~~i~~il~~~~p~ve~~SiDEafLDvT~~~~~~~~~~~~~~~~~~~~~~~ 161 (459)
T 1t94_A 82 RAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSS 161 (459)
T ss_dssp CTTCCHHHHHHHCTTCEEECCCHHHHHHHHHHHHHHHHHHCTTCEECSSSEEEEECHHHHHHHTTCCGGGSEEECCC---
T ss_pred CCCCcHHHHHHHCCCeEEECCCHHHHHHHHHHHHHHHHHhCCceEEeecceEEEECchhHHHhhcccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998754
Q ss_pred ---------------------------------------------------------cCCCHHHHHHHHHHHHHHHhCCe
Q 005785 215 ---------------------------------------------------------RGISGIEIAEELRTSVYEEAGLT 237 (677)
Q Consensus 215 ---------------------------------------------------------~g~~~~~la~~IR~~I~~~tGlt 237 (677)
||.++.++|++||++|+++||||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~~~la~~IR~~I~~~~Glt 241 (459)
T 1t94_A 162 VENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLT 241 (459)
T ss_dssp CCCCCCCGGGGGGSTTTTTTGGGCC----------------------CCCCCCCEEECCSSHHHHHHHHHHHHHHHHSCC
T ss_pred cccccccCcccccccccccccccccccccccccccccccccccccccccccccchhhccCCHHHHHHHHHHHHHHHhCCe
Confidence 34468999999999999999999
Q ss_pred eEEEecCCHHHHHHHhcccCCCCeEEecCChhHHHHhhhcCCCccccCCCHHHHHHHHhhcCCCcHHHHHhchHHHHHhc
Q 005785 238 CSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 317 (677)
Q Consensus 238 ~S~GIA~NklLAKLaS~~~KPnGq~~l~~~~~~i~~fL~~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~~~L~~rF 317 (677)
||+|||+||+|||||++++|||||++++++++++.+||++|||++|||||++++++|++ +||+||+||++.+..|.++|
T Consensus 242 ~S~GIa~nk~LAKlAs~~~KP~g~~vl~~~~~~v~~fL~~lpv~~l~GiG~~~~~~L~~-lGI~T~gdL~~~~~~L~~~f 320 (459)
T 1t94_A 242 ASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKA-LGIITCTELYQQRALLSLLF 320 (459)
T ss_dssp EEEEEESSHHHHHHHHHHTTTTCEEECCSSHHHHHHHHTTCBGGGCTTSCHHHHHHHHH-TTCCBHHHHHHTHHHHHHHS
T ss_pred EEEeecccHHHHHHHhhccCCCCEEEecCcHHHHHHHHHcCCHHhcCCcCHHHHHHHHH-cCCCcHHHHHhhHHHHHHHh
Confidence 99999999999999999999999999988656799999999999999999999999996 99999999999988899999
Q ss_pred ChhHHHHHHHhccCCCCCCCCCCCCCcceeeeecCCccccHHHHHHHHHHHHHHHHHHHHHhCCcccEEEEEEEEcCCee
Q 005785 318 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397 (677)
Q Consensus 318 G~~~~~~L~~~a~G~~~~~~~~~~~rKSis~e~tf~~~~d~~~L~~~L~~La~~L~~rLr~~~l~~rtltLklk~~~f~~ 397 (677)
|...+.+|++.++|++..++....++|||+.++||+.+.+.+++..+|.+|+++|+.+|+++++.+++|+|++++.+|..
T Consensus 321 G~~~~~~l~~~a~G~d~~~v~~~~~~kSi~~~~tf~~~~~~~~l~~~l~~L~~~l~~rL~~~~~~~~~vtl~l~~~~~~~ 400 (459)
T 1t94_A 321 SETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEV 400 (459)
T ss_dssp CHHHHHHHHHHHTTCCCSCC---C--CCEEEEEEEEEECCHHHHHHHHHHHHSSTTCCCC---CCCSCEEEEEEETTCCE
T ss_pred ChHhHHHHHHHHcCCCCcccCCCCCCcceeeeeecCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEEEEECCCce
Confidence 99888999999999999998888899999999999988899999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHhhC------CCCEEEEEEEecCCCcCc
Q 005785 398 RTRAVTLQKYISSSEDILKHASVLLKAEL------PVSLRLIGLRVTQFNEDK 444 (677)
Q Consensus 398 ~trs~tl~~~t~~~~~L~~~a~~LLe~~l------p~~VRlIGVrls~L~~~~ 444 (677)
.+++++++.|+++.+.|+.++..||++.+ +.+||+|||++++|.+..
T Consensus 401 ~srs~~l~~~t~~~~~i~~~a~~ll~~~~~~~~~~~~~ir~lGv~~~~l~~~~ 453 (459)
T 1t94_A 401 KTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGVRISSFPNEE 453 (459)
T ss_dssp EEECC-CCCCCCC--CHHHHHHHHHHHHHSSSTTSCCCEEEEEEEECC-----
T ss_pred eeEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEEccCcCcc
Confidence 99999999999999999999999999875 456999999999998764
No 3
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-76 Score=663.14 Aligned_cols=339 Identities=29% Similarity=0.457 Sum_probs=319.5
Q ss_pred CCCeEEEEeCCchhhhcccccCCCCCCCcEEEecC---------------------------------------------
Q 005785 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM--------------------------------------------- 137 (677)
Q Consensus 103 ~~r~I~HIDmDaFyAsVE~~~~PeLr~kPvAV~~~--------------------------------------------- 137 (677)
..|+|+||||||||||||++.+|+|+|+||||++.
T Consensus 86 ~~r~I~HvDmd~FfaSve~~~~P~LrgkPvaV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 165 (504)
T 3gqc_A 86 HQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILKGKAADIPDSSLWENPDSA 165 (504)
T ss_dssp -CCCEEEEEETTHHHHHHTTTCTTTTTSCEEECSSCSSCBCCCCTTBCHHHHHHHHHTTTTCC-----------------
T ss_pred CCcEEEEEeccchhhhhhhccCccccCCCeEEEecCCCCccccccccchhhhhhhhhhhhcccccccccccccccccchh
Confidence 36999999999999999999999999999999941
Q ss_pred ---Ce--------EEecCHHHHHcCCCCCCcHHHHHHhCCCcEEeCCChHHHHHHHHHHHHHHHhcCCceEEeccCceEE
Q 005785 138 ---SM--------ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYL 206 (677)
Q Consensus 138 ---~~--------V~taNY~ARk~GVr~GMp~~~AkkLCP~Lvvvp~d~~~Y~~~s~~i~~il~~y~p~ve~~SiDEa~L 206 (677)
|+ |+||||+||+|||++|||+++|++|||+|+++|+||+.|.++|+++++|+.+|+|.||++||||+||
T Consensus 166 ~~~Gv~av~s~s~V~aaSyeAR~~GVrsGMp~~~A~~lcP~livv~~d~~~Y~~~S~~i~~il~~~tp~VE~~SiDEafL 245 (504)
T 3gqc_A 166 QANGIDSVLSRAEIASCSYEARQLGIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVSCDEALV 245 (504)
T ss_dssp ----CGGGBCCCBCSEECHHHHTTTCCTTCBHHHHHHHCTTCEEECCCHHHHHHHHHHHHHHHHTTCSCEEEEETTEEEE
T ss_pred hccccceeccCCEEEECCHHHHHcCCCCCCcHHHHHHhCCCcEEECCCHHHHHHHHHHHHHHHHHhCCeEEEecCCeEEE
Confidence 23 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchhhhhcCCCHHHHHHHHHHHHHHHhCCeeEEEecCCHHHHHHHhcccCCCCeEEecCChhHHHHhhhcCCCccccCC
Q 005785 207 DITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGI 286 (677)
Q Consensus 207 DlT~~~~~~g~~~~~la~~IR~~I~~~tGlt~S~GIA~NklLAKLaS~~~KPnGq~~l~~~~~~i~~fL~~LPV~kLpGI 286 (677)
|||++.++||.++.++|++||++|+++||||||+|||+||++||||++++||||+++++++ .+.+||++|||++||||
T Consensus 246 Dvtg~~~l~g~~~~~la~~Ir~~I~~~tGlt~SvGIa~nk~LAKlAs~~~KP~G~~vl~~~--~~~~~L~~LPV~~l~GI 323 (504)
T 3gqc_A 246 DITEILAETKLTPDEFANAVRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPE--EVDDFIRGQLVTNLPGV 323 (504)
T ss_dssp ECHHHHHHHCCCHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHHCSSCEEECCGG--GHHHHHHHSBGGGSTTC
T ss_pred eccchHhhcCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCHHHHHHHHhhCccCCEEEECHH--HHHHHHhcCChhHhhCc
Confidence 9999999998789999999999999999999999999999999999999999999999875 68999999999999999
Q ss_pred CHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcChhHHHHHHHhccCCCCCCCCCCCCCcceeeeecCCc-cccHHHHHHH
Q 005785 287 GKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSV-TEDKALLYRK 364 (677)
Q Consensus 287 G~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG~~~~~~L~~~a~G~~~~~~~~~~~rKSis~e~tf~~-~~d~~~L~~~ 364 (677)
|+++.++|++ +||+||+||++++ ..|.++||...+.+||..|+|++..++.+..++|||+.++||+. +.+.+++..+
T Consensus 324 G~~t~~kL~~-lGI~TigDLa~~~~~~L~~~fG~~~g~~L~~~a~GiD~~pV~~~~~~KSi~~e~tf~~d~~~~~~l~~~ 402 (504)
T 3gqc_A 324 GHSMESKLAS-LGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAF 402 (504)
T ss_dssp CHHHHHHHHH-TTCCBHHHHTTSCHHHHHHHHCHHHHHHHHHHTTTCCCCCCCCCCCCCCEEEEECSSCCCCSHHHHHHH
T ss_pred CHHHHHHHHH-cCCCcHHHHHhccHHHHHHhhChhHHHHHHHHhcCCCccccccccCCcceeeeeccCCCCCCHHHHHHH
Confidence 9999999997 9999999999997 89999999988889999999999999888888999999999997 6899999999
Q ss_pred HHHHHHHHHHHHHHhCCcccEEEEEEEEc---------CC------eeeEEEEEcCCCCCCHHHHHHHHHHHHHhhC-C-
Q 005785 365 LAEIAEMLSADMQKEGLRGRTLTLKLKTA---------SF------EVRTRAVTLQKYISSSEDILKHASVLLKAEL-P- 427 (677)
Q Consensus 365 L~~La~~L~~rLr~~~l~~rtltLklk~~---------~f------~~~trs~tl~~~t~~~~~L~~~a~~LLe~~l-p- 427 (677)
|.+|+++|+.||+++++.+++|+|+|+++ +| ...+++++++.||++..+|++.|..||++.+ +
T Consensus 403 L~~La~~l~~rLr~~~~~~~~vtLkl~~r~~d~~~~t~~f~~~g~~~~~trs~tL~~pT~d~~~I~~~A~~Ll~~~~~~~ 482 (504)
T 3gqc_A 403 LLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKLNI 482 (504)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEEEEEECTTSCSBCSSTTCCCSEEEEEEEEEEEEEECCHHHHHHHHHHHHHTSCCCG
T ss_pred HHHHHHHHHHHHHHcCCceeEEEEEEEEecccccccccccccCCCcccceeEeecCCCcCCHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999874 23 5679999999999999999999999999985 3
Q ss_pred CCEEEEEEEecCCCcCc
Q 005785 428 VSLRLIGLRVTQFNEDK 444 (677)
Q Consensus 428 ~~VRlIGVrls~L~~~~ 444 (677)
.+||+|||++++|.+..
T Consensus 483 ~~vRllGV~~s~L~~~~ 499 (504)
T 3gqc_A 483 SDMRGVGIHVNQLVPTN 499 (504)
T ss_dssp GGEEEEEEEEEEEEECC
T ss_pred CCeEEEEEEEcCcccCC
Confidence 68999999999998765
No 4
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=100.00 E-value=2.6e-76 Score=637.06 Aligned_cols=331 Identities=30% Similarity=0.448 Sum_probs=315.2
Q ss_pred CeEEEEeCCchhhhcccccCCCCCCCcEEEe---c----CCeEEecCHHHHHcCCCCCCcHHHHHHhCCCcEEeCCChHH
Q 005785 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---T----MSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTK 177 (677)
Q Consensus 105 r~I~HIDmDaFyAsVE~~~~PeLr~kPvAV~---~----~~~V~taNY~ARk~GVr~GMp~~~AkkLCP~Lvvvp~d~~~ 177 (677)
|+|+||||||||||||++++|+|+++||||+ + .|+|+||||+||+|||++|||+++|++|||+|+++|+||+.
T Consensus 1 r~i~hiD~d~FyasvE~~~~p~l~~~Pv~V~~~~~~~~~~g~V~a~syeAr~~GV~~gm~~~~A~~lcP~l~~~~~~~~~ 80 (352)
T 1jx4_A 1 MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV 80 (352)
T ss_dssp CCEEEEEETTHHHHHHHHHCGGGTTSCEEEEEECSSSTTCEEEEEECHHHHTTTCCTTSBHHHHHHHCTTSEEEECCHHH
T ss_pred CEEEEEecCcHHHHHHhHhCccccCCcEEEEeCCCCCCCCeEEEECCHHHHHcCCCCCCcHHHHHHHCCCeEEECCCHHH
Confidence 6899999999999999999999999999998 4 38999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCceEEeccCceEEecchhhhhcCCCHHHHHHHHHHHHHHHhCCeeEEEecCCHHHHHHHhcccC
Q 005785 178 YTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 257 (677)
Q Consensus 178 Y~~~s~~i~~il~~y~p~ve~~SiDEa~LDlT~~~~~~g~~~~~la~~IR~~I~~~tGlt~S~GIA~NklLAKLaS~~~K 257 (677)
|.++|++++.|+++|+|.||++||||+|||||++.++|| ++.++|++||++|+++||+|||+|||+||++||||++++|
T Consensus 81 Y~~~s~~i~~il~~~tp~ve~~SiDE~~lDvt~~~~~~~-~~~~~a~~ir~~i~~~~Gl~~svGia~nk~lAKlAs~~~K 159 (352)
T 1jx4_A 81 YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYR-EAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAK 159 (352)
T ss_dssp HHHHHHHHHHHHTTTCSCEEEEETTEEEEECTTTCSSHH-HHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCeEEecCceEEEeccCcccccc-cHHHHHHHHHHHHHHHHCCcEEEEEcCCHHHHHHHhccCC
Confidence 999999999999999999999999999999999999888 8999999999999999999999999999999999999999
Q ss_pred CCCeEEecCChhHHHHhhhcCCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcChhHHHHHHHhccCCCCCC
Q 005785 258 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTN 336 (677)
Q Consensus 258 PnGq~~l~~~~~~i~~fL~~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG~~~~~~L~~~a~G~~~~~ 336 (677)
|||++++++ +++.+||++|||++|||||+++.++|++ +||+|++||++++ ..|.++||...+.+++..++|++..+
T Consensus 160 p~g~~~~~~--~~~~~~L~~lpv~~l~GiG~~~~~~L~~-~Gi~t~~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~ 236 (352)
T 1jx4_A 160 PNGIKVIDD--EEVKRLIRELDIADVPGIGNITAEKLKK-LGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEP 236 (352)
T ss_dssp SSCEEECCH--HHHHHHHHHSBGGGSTTCCHHHHHHHHT-TTCCBGGGGGSSCHHHHHHHHCHHHHHHHHHHHTTCCCCC
T ss_pred CCCEEEECH--HHHHHHHHhCCCCcccccCHHHHHHHHH-cCCchHHHHHCCCHHHHHHhcChhHHHHHHHHhCCCCCCC
Confidence 999999975 4789999999999999999999999997 9999999999998 89999999886778889999999999
Q ss_pred CCCCCCCcceeeeecCCc-cccHHHHHHHHHHHHHHHHHHHHHhCCcccEEEEEEEEcCCeeeEEEEEcCCCCCCHHHHH
Q 005785 337 TPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 415 (677)
Q Consensus 337 ~~~~~~rKSis~e~tf~~-~~d~~~L~~~L~~La~~L~~rLr~~~l~~rtltLklk~~~f~~~trs~tl~~~t~~~~~L~ 415 (677)
+.+.. +|||+.+++|+. +.+.+++..+|.+|+++|+.+|+++ .+++|+|++++.+|...+++++++.||++...|+
T Consensus 237 v~~~~-~ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rL~~~--~~~~v~l~l~~~~~~~~~~~~~l~~pt~~~~~l~ 313 (352)
T 1jx4_A 237 IRTRV-RKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKR--IPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYS 313 (352)
T ss_dssp CCCCC-CCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHTTC--CEEEEEEEEEETTSCEEEEEEECSSCCCHHHHHH
T ss_pred ccCCC-CceEEeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHh--cCCEEEEEEEECCCCcceeEEecCCCCCCHHHHH
Confidence 88777 999999999997 6899999999999999999999998 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC---CCCEEEEEEEecCCCcC
Q 005785 416 KHASVLLKAEL---PVSLRLIGLRVTQFNED 443 (677)
Q Consensus 416 ~~a~~LLe~~l---p~~VRlIGVrls~L~~~ 443 (677)
+ +..+|++.+ +.+||+|||++++|.+.
T Consensus 314 ~-a~~ll~~~~~~~~~~vr~lgv~~~~l~~~ 343 (352)
T 1jx4_A 314 E-SVKLLQKILEEDERKIRRIGVRFSKFIEA 343 (352)
T ss_dssp H-HHHHHHHHHHHCCSCEEEEEEEEEEEC--
T ss_pred H-HHHHHHHHHhcCCCCEEEEEEEEeCCCCc
Confidence 9 999999874 57999999999999764
No 5
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=4.7e-77 Score=643.82 Aligned_cols=336 Identities=29% Similarity=0.446 Sum_probs=219.2
Q ss_pred CCCeEEEEeCCchhhhcccccCCCCCCCcEEEecC-------CeEEecCHHHHHcCCCCCCcHHHHHHhCCCcEEeCCCh
Q 005785 103 LSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM-------SMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDF 175 (677)
Q Consensus 103 ~~r~I~HIDmDaFyAsVE~~~~PeLr~kPvAV~~~-------~~V~taNY~ARk~GVr~GMp~~~AkkLCP~Lvvvp~d~ 175 (677)
|+|+|+||||||||||||++++|+|+++||||+++ |+|+||||+||+|||++|||+++|+++||+|+++|+||
T Consensus 1 M~R~I~hiD~d~FyasvE~~~~P~L~~kPv~V~~~~d~~~~~g~v~a~syeAr~~GV~~gm~~~~A~~lcP~l~~~~~~~ 80 (356)
T 4dez_A 1 MTKWVLHVDLDQFLASVELRRRPDLRGQPVIVGGSGDPSEPRKVVTCASYEAREFGVHAGMPLRAAARRCPDATFLPSDP 80 (356)
T ss_dssp -CEEEEEEEETTHHHHHHHHHCGGGTTSCEEEEEC------CCEEEEECHHHHTTTCCTTSBHHHHHHHCTTCEEEECCH
T ss_pred CceEEEEEcCCcHHHHHHhhhCccccCCeEEEEeCCCCCCCceEEEEECHHHHHhCCCCCCcHHHHHHhCCCeEEECCcH
Confidence 57999999999999999999999999999999853 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEeccCceEEecchhhhhcCCCHHHHHHHHHHHHHHHhCCeeEEEecCCHHHHHHHhcc
Q 005785 176 TKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255 (677)
Q Consensus 176 ~~Y~~~s~~i~~il~~y~p~ve~~SiDEa~LDlT~~~~~~g~~~~~la~~IR~~I~~~tGlt~S~GIA~NklLAKLaS~~ 255 (677)
+.|.++|..++.|+.+|+|.||++||||+|||+|+.. ++ ++.++|++||++|+++||+|||+|||+||+|||||+++
T Consensus 81 ~~Y~~~s~~v~~il~~~~p~ve~~SiDEafld~t~~~--~~-~~~~~a~~ir~~i~~~~gl~~siGIa~nk~lAKlAs~~ 157 (356)
T 4dez_A 81 AAYDEASEQVMGLLRDLGHPLEVWGWDEAYLGADLPD--ES-DPVEVAERIRTVVAAETGLSCSVGISDNKQRAKVATGF 157 (356)
T ss_dssp HHHHHHHHHHHHHHHTTSSCEEEETTTEEEEEEECCT--TC-CHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCceeecCcchhheeccccc--CC-CHHHHHHHHHHHHHHHhCCccccchhccHHHHHHHHHH
Confidence 9999999999999999999999999999999999764 34 78999999999999999999999999999999999999
Q ss_pred cCCCCeEEecCChhHHHHhhhcCCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcChhHHHHHHHhccCCCC
Q 005785 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGS 334 (677)
Q Consensus 256 ~KPnGq~~l~~~~~~i~~fL~~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG~~~~~~L~~~a~G~~~ 334 (677)
+||||+++++++ .+.+||+++||++|||||+++.++|++ +||+|++||++++ ..|.++||...+.+++..++|++.
T Consensus 158 ~Kp~g~~~i~~~--~~~~~L~~lpv~~l~GiG~~~~~~L~~-~GI~Ti~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~ 234 (356)
T 4dez_A 158 AKPAGIYVLTEA--NWMTVMGDRPPDALWGVGPKTTKKLAA-MGITTVADLAVTDPSVLTTAFGPSTGLWLLLLAKGGGD 234 (356)
T ss_dssp HCSSCEEECCTT--THHHHHTTSCGGGSTTCCHHHHHHHHH-TTCCSHHHHHTSCHHHHHHHHCHHHHHHHHHHHTTCCC
T ss_pred hhhcCcccccch--hhhhhhhcCcHHHHcCCchhHHHHHHH-cCCCeecccccCCHHHHHHHhCChHHHHHHHHHcCCCc
Confidence 999999999875 588999999999999999999999997 9999999999997 899999999888999999999998
Q ss_pred CCCCCC-CCCcceeeeecCCc-cccHHHHHHHHHHHHHHHHHHHHHhCCcccEEEEEEEEcCCeeeEEEEEcCCCCCCHH
Q 005785 335 TNTPQA-RFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSE 412 (677)
Q Consensus 335 ~~~~~~-~~rKSis~e~tf~~-~~d~~~L~~~L~~La~~L~~rLr~~~l~~rtltLklk~~~f~~~trs~tl~~~t~~~~ 412 (677)
.++... ..+|||+.++||+. +.+.+++..+|..|+++++.+|+++++.+++|+|++++++|...+++.+++.||++..
T Consensus 235 ~~v~~~~~~~ksi~~~~tf~~~~~~~~~l~~~l~~la~~~~~rLr~~~~~~~~l~v~ir~~~f~~~t~~~~l~~pt~d~~ 314 (356)
T 4dez_A 235 TEVSSEPWVPRSRSHVVTFPQDLTERREMDSAVRDLALQTLAEIVEQGRIVTRVAVTVRTSTFYTRTKIRKLPAPSTDAG 314 (356)
T ss_dssp CCCCC---------------------------------------------------------------------------
T ss_pred ccccccccccccccccccCCCcCCCHHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEEEeCCCeEEEEEEECCcccCCHH
Confidence 887654 46799999999987 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhC-CCCEEEEEEEecCCCcCc
Q 005785 413 DILKHASVLLKAEL-PVSLRLIGLRVTQFNEDK 444 (677)
Q Consensus 413 ~L~~~a~~LLe~~l-p~~VRlIGVrls~L~~~~ 444 (677)
+|++.+..||++.+ +.+||+|||++++|.+..
T Consensus 315 ~i~~~a~~ll~~~~~~~~vRliGV~ls~l~d~~ 347 (356)
T 4dez_A 315 QIVDTALAVLDQFELDRPVRLLGVRLELAMDDV 347 (356)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHhccCCCCEEEEEEEECCCCCCC
Confidence 99999999999875 568999999999998754
No 6
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=6.8e-76 Score=634.30 Aligned_cols=331 Identities=29% Similarity=0.430 Sum_probs=315.6
Q ss_pred CeEEEEeCCchhhhcccccCCCCCCCcEEEec-------CCeEEecCHHHHHcCCCCCCcHHHHHHhCCCcEEeCCChHH
Q 005785 105 RSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTK 177 (677)
Q Consensus 105 r~I~HIDmDaFyAsVE~~~~PeLr~kPvAV~~-------~~~V~taNY~ARk~GVr~GMp~~~AkkLCP~Lvvvp~d~~~ 177 (677)
|+|+||||||||||||++++|+|+++||||++ .|+|+||||+||+|||++|||+++|++|||+|+++|+||+.
T Consensus 1 r~i~hiD~d~FyasvE~~~~p~l~~~Pv~V~~~~~~~~~~g~V~a~syeAr~~GV~~gm~~~~A~~lcP~l~~~~~~~~~ 80 (354)
T 3bq0_A 1 MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI 80 (354)
T ss_dssp CCEEEEEETTHHHHHHHHHCGGGTTSCEEEEECCC---CCCEEEEECHHHHHTTCCTTCBHHHHHHHCTTCEEEECCHHH
T ss_pred CEEEEEecChHHHHHHHHhCccccCCcEEEEcCCCCCCCCeEEEECCHHHHHhCCCCCCcHHHHHHHCCCeEEECCCHHH
Confidence 68999999999999999999999999999986 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCceEEeccCceEEecchhhh-hcCCCHHHHHHHHHHHHHHHhCCeeEEEecCCHHHHHHHhccc
Q 005785 178 YTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR-ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDIN 256 (677)
Q Consensus 178 Y~~~s~~i~~il~~y~p~ve~~SiDEa~LDlT~~~~-~~g~~~~~la~~IR~~I~~~tGlt~S~GIA~NklLAKLaS~~~ 256 (677)
|.++|++++.|+++|+|.||++||||+|||||++.+ +|| ++.++|++||++|+++||+|||+|||+||++||||++++
T Consensus 81 Y~~~s~~i~~il~~~tp~ve~~SiDE~~lDvt~~~~~~~~-~~~~la~~ir~~i~~~~Gl~~svGia~nk~lAKlAs~~~ 159 (354)
T 3bq0_A 81 YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFE-NGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKS 159 (354)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTTCHH-HHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCEEEecCCeeEEecCcchhhccC-CHHHHHHHHHHHHHHHHCCcEEeeeccCHHHHHHHhccC
Confidence 999999999999999999999999999999999998 888 899999999999999999999999999999999999999
Q ss_pred CCCCeEEecCChhHHHHhhhcCCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcChhHHHHHHHhccCCCCC
Q 005785 257 KPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGST 335 (677)
Q Consensus 257 KPnGq~~l~~~~~~i~~fL~~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG~~~~~~L~~~a~G~~~~ 335 (677)
||||+++++++ .+.+||++|||++|||||+++.++|++ +||+|++||++++ ..|.++||...+.+++..++|++..
T Consensus 160 Kp~g~~~~~~~--~~~~~L~~lpv~~l~GiG~~~~~~L~~-~Gi~t~~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~ 236 (354)
T 3bq0_A 160 KPNGLGVIRPT--EVQDFLNELDIDEIPGIGSVLARRLNE-LGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSE 236 (354)
T ss_dssp CSSCEEECCGG--GHHHHHHHCBSTTSTTCCHHHHHHHTT-TTCCBGGGGGGSCHHHHHHHHCHHHHHHHHHHHTTCCCC
T ss_pred CCCCEEEECHH--HHHHHHHhCCcccccCcCHHHHHHHHH-cCCccHHHHhcCCHHHHHHHHCHHHHHHHHHHhCCCCCC
Confidence 99999999864 689999999999999999999999997 9999999999997 8999999988677888999999999
Q ss_pred CCCCCCCCcceeeeecCCc-cccHHHHHHHHHHHHHHHHHHHHHhCCcccEEEEEEEEcCCeeeEEEEEcCCCCCCHHHH
Q 005785 336 NTPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDI 414 (677)
Q Consensus 336 ~~~~~~~rKSis~e~tf~~-~~d~~~L~~~L~~La~~L~~rLr~~~l~~rtltLklk~~~f~~~trs~tl~~~t~~~~~L 414 (677)
++.+.. +|||+.+++|+. +.+.+++..+|.+|+++|+.+|++ .+++|+|++++.+|...+++++++.||++...|
T Consensus 237 ~v~~~~-~ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rL~~---~~~~v~l~~~~~~~~~~~~~~~l~~pt~~~~~i 312 (354)
T 3bq0_A 237 PVENKS-KIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNG---IPMRITVIAIMEDLDILSKGKKFKHGISIDNAY 312 (354)
T ss_dssp CCCSEE-CCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHTTTSS---EEEEEEEEEEETTSCEEEEEEECSSCCCHHHHH
T ss_pred CCcCCC-CceeEEeEeCCCCCCCHHHHHHHHHHHHHHHHHHHHh---hCCEEEEEEEeCCCCcceEEEECCCccCCHHHH
Confidence 988777 999999999997 689999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC-CC--C-EEEEEEEecCCCcCc
Q 005785 415 LKHASVLLKAEL-PV--S-LRLIGLRVTQFNEDK 444 (677)
Q Consensus 415 ~~~a~~LLe~~l-p~--~-VRlIGVrls~L~~~~ 444 (677)
++ +..+|++.+ +. + ||+|||++++|.+..
T Consensus 313 ~~-~~~ll~~~~~~~~~~~vr~lgv~~~~l~~~~ 345 (354)
T 3bq0_A 313 KV-AEDLLRELLVRDKRRNVRRIGVKLDNIIINK 345 (354)
T ss_dssp HH-HHHHHHHHTTSCSSCCEEEEEEEEEEEECC-
T ss_pred HH-HHHHHHHHhccCCCCceEEEEEEEecCCCCC
Confidence 99 999999985 43 8 999999999998753
No 7
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=1.7e-75 Score=633.02 Aligned_cols=330 Identities=30% Similarity=0.438 Sum_probs=313.9
Q ss_pred eEEEEeCCchhhhcccccCCCCCCCcEEEec-------CCeEEecCHHHHHcCCCCCCcHHHHHHhCCCcEEeCCChHHH
Q 005785 106 SWLHVDMDAFYAAVETLSNPSLKGKPMAVGT-------MSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKY 178 (677)
Q Consensus 106 ~I~HIDmDaFyAsVE~~~~PeLr~kPvAV~~-------~~~V~taNY~ARk~GVr~GMp~~~AkkLCP~Lvvvp~d~~~Y 178 (677)
+|+||||||||||||++++|+|+++||||++ .|+|+||||+||+|||++|||+++|++|||+|+++|+||+.|
T Consensus 2 ~i~hiD~d~FyasvE~~~~P~L~~~Pv~V~~~~~~~~~~g~V~a~sy~Ar~~GV~~gm~~~~A~~lcP~l~~~~~~~~~Y 81 (362)
T 4f4y_A 2 IVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPIY 81 (362)
T ss_dssp CEEEEECTTHHHHHHHHHCGGGTTSCEEEEEECSSSSSCEEEEEECHHHHHTTCCTTCBHHHHHHHCTTSEEEECCHHHH
T ss_pred EEEEEecCCHHHHHHhHhCccccCCeEEEecCCCCCCCCeEEEECCHHHHHcCCCCCCcHHHHHHHCCCeEEECCCHHHH
Confidence 6999999999999999999999999999985 369999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEeccCceEEecchhhh-hcCCCHHHHHHHHHHHHHHHhCCeeEEEecCCHHHHHHHhcccC
Q 005785 179 TYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR-ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINK 257 (677)
Q Consensus 179 ~~~s~~i~~il~~y~p~ve~~SiDEa~LDlT~~~~-~~g~~~~~la~~IR~~I~~~tGlt~S~GIA~NklLAKLaS~~~K 257 (677)
.++|++++.|+.+|+|.||++||||+|||||++.+ +|| ++.++|++||++|+++||+|||+|||+||++||||++++|
T Consensus 82 ~~~s~~i~~il~~~tp~ve~~SiDEa~LDvt~~~~~~~~-~~~~~a~~ir~~I~~~~Gl~~svGIa~nk~lAKlAs~~~K 160 (362)
T 4f4y_A 82 EAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFE-NGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK 160 (362)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTTCHH-HHHHHHHHHHHHHHHHHCCCCEEEEESSHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCCEEEecCceEEEecCCccccccC-CHHHHHHHHHHHHHHHHCCcEEEEEeCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999988 788 8999999999999999999999999999999999999999
Q ss_pred CCCeEEecCChhHHHHhhhcCCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcChhHHHHHHHhccCCCCCC
Q 005785 258 PNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTN 336 (677)
Q Consensus 258 PnGq~~l~~~~~~i~~fL~~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG~~~~~~L~~~a~G~~~~~ 336 (677)
|||+++++++ .+.+||++|||++|||||++++++|++ +||+|++||++++ ..|.++||...+.+++..++|++..+
T Consensus 161 p~g~~~~~~~--~~~~~L~~lpv~~l~GiG~~~~~~L~~-~GI~Ti~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~ 237 (362)
T 4f4y_A 161 PNGLGVIRPT--EVQDFLNELDIDEIPGIGSVLARRLNE-LGIQKLRDILSKNYNELEKITGKAKALYLLKLAQDEYNEP 237 (362)
T ss_dssp SSCEEECCTT--THHHHHHTCBSTTSTTCCSTTHHHHHH-TTCCBGGGGTTSCHHHHHHHHCHHHHHHHHHHHTTCCCCC
T ss_pred CCCEEEECHH--HHHHHHHhCChhhccCCCHHHHHHHHH-cCCChHHHHhcCCHHHHHHHhChHHHHHHHHHhcCCCCCc
Confidence 9999999765 689999999999999999999999997 9999999999998 89999999777888888999999999
Q ss_pred CCCCCCCcceeeeecCCc-cccHHHHHHHHHHHHHHHHHHHHHhCCcccEEEEEEEEcCCeeeEEEEEcCCCCCCHHHHH
Q 005785 337 TPQARFRKSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDIL 415 (677)
Q Consensus 337 ~~~~~~rKSis~e~tf~~-~~d~~~L~~~L~~La~~L~~rLr~~~l~~rtltLklk~~~f~~~trs~tl~~~t~~~~~L~ 415 (677)
+.+..+ |||+.++||+. +.+.+++..+|.+|+++|+.+|++ .+++|+|++++.+|...+++++++.| ++...|+
T Consensus 238 v~~~~~-ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rLr~---~~~~v~l~i~~~~~~~~t~s~~l~~p-~d~~~i~ 312 (362)
T 4f4y_A 238 IRTRVR-KSIGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNG---IPMRITVIAIMEDLDILSKGKKFKHG-ISIDNAY 312 (362)
T ss_dssp CCCCCC-CEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCSS---EEEEEEEEEEETTSCEEEEEEECSSC-CCHHHHH
T ss_pred CccCCC-cceEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHh---CCCEEEEEEEECCCcEEEEEEECCCC-CCHHHHH
Confidence 888777 99999999997 689999999999999999999998 99999999999999999999999999 9999999
Q ss_pred HHHHHHHHhhC---CCC-EEEEEEEecCCCcCc
Q 005785 416 KHASVLLKAEL---PVS-LRLIGLRVTQFNEDK 444 (677)
Q Consensus 416 ~~a~~LLe~~l---p~~-VRlIGVrls~L~~~~ 444 (677)
+.+..+|++.+ +.+ ||++||++++|.+..
T Consensus 313 ~~a~~ll~~~~~~~~~~~vr~lGV~~~~L~~~~ 345 (362)
T 4f4y_A 313 KVAEDLLRELLVRDKRRNVRRIGVKLDNIIINK 345 (362)
T ss_dssp HHHHHHHHHHTTSSCSCCEEEEEEEEEEEEC--
T ss_pred HHHHHHHHHHHhhcCCccEEEEEEEEeccccCC
Confidence 99999999987 357 999999999998764
No 8
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=100.00 E-value=1.7e-74 Score=636.18 Aligned_cols=343 Identities=29% Similarity=0.444 Sum_probs=315.7
Q ss_pred hccCCCCeEEEEeCCchhhhcccccCCCCCCCcEEEecCCeEEecCHHHHHcCCCCCCcHHHHHHhCCCcEEeCC-ChHH
Q 005785 99 ATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPT-DFTK 177 (677)
Q Consensus 99 ~~rd~~r~I~HIDmDaFyAsVE~~~~PeLr~kPvAV~~~~~V~taNY~ARk~GVr~GMp~~~AkkLCP~Lvvvp~-d~~~ 177 (677)
..++..|+|+||||||||||||++++|+|+++||||++.|+|+||||+||+|||++|||+++|+++||+|+++++ ||+.
T Consensus 22 ~~~~~~r~i~hiD~d~FyASvE~~~~P~L~~~Pv~V~~~g~V~a~syeAR~~GV~~gm~~~~A~~lcP~lv~v~~~~~~~ 101 (420)
T 3osn_A 22 TPNASSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMNVRDAKEKCPQLVLVNGEDLTR 101 (420)
T ss_dssp ---CCCCCEEEEEETTHHHHHHHHHCGGGTTSCEEEEETTEEEEECHHHHTTTCCTTEEHHHHHHHCTTCEEEECCCCHH
T ss_pred CCCCCCCEEEEEecCcHHHHHHHHhCcCccCCeEEEcCCCEEEECCHHHHHcCCCCCCcHHHHHHhCccccccCCCCHHH
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999996 9999
Q ss_pred HHHHHHHHHHHHHhcCCceEEeccCceEEecchhhh-------------------hcCCC--------------HHHHHH
Q 005785 178 YTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR-------------------ERGIS--------------GIEIAE 224 (677)
Q Consensus 178 Y~~~s~~i~~il~~y~p~ve~~SiDEa~LDlT~~~~-------------------~~g~~--------------~~~la~ 224 (677)
|.++|++|++|+.+|+|.||++||||+|||||++.. +||.. +.++|+
T Consensus 102 Y~~~S~~i~~il~~~tp~ve~~SiDE~fLDvt~~~~~~l~~~~~~~~~~~~~~g~l~g~~~~~~~~~~~~~l~~~~~la~ 181 (420)
T 3osn_A 102 YREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAA 181 (420)
T ss_dssp HHHHHHHHHHHHHHHCSCEEEETTTEEEEECHHHHHHHHHHSCSSSGGGCCCCSEEGGGCCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEecCCEEEEECcccchhhccccccccccccccccccccccccccccchhhcchHHHHHHH
Confidence 999999999999999999999999999999999863 34421 579999
Q ss_pred HHHHHHHHHhCCeeEEEecCCHHHHHHHhcccCCCCeEEecCChhHHHHhhhcCC-CccccCCCHHHHHHHHhhcCCCcH
Q 005785 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLP-IRKIGGIGKVTEHILRDVFGINTC 303 (677)
Q Consensus 225 ~IR~~I~~~tGlt~S~GIA~NklLAKLaS~~~KPnGq~~l~~~~~~i~~fL~~LP-V~kLpGIG~~t~~~L~~~lGI~T~ 303 (677)
+||++|+++||+|||+|||+||+|||||++++||||++++.++ .+.+||++|| |++|||||++++++|++ +||+|+
T Consensus 182 ~Ir~~I~~~~Glt~svGIa~nk~LAKlAs~~~KP~g~~vl~~~--~~~~~L~~Lppv~~l~GIG~~t~~~L~~-lGI~Ti 258 (420)
T 3osn_A 182 EMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPE--SCQHLIHSLNHIKEIPGIGYKTAKCLEA-LGINSV 258 (420)
T ss_dssp HHHHHHHHHHCCCEEEEEESSHHHHHHHHTSSCSSCEEECCGG--GHHHHHHHCSSGGGSTTCCHHHHHHHHH-TTCCSH
T ss_pred HHHHHHHHHHCCcEEEEEeCCHHHHHHhhhhcCCCCeEEecHH--HHHHhhccCccHHHccCCCHHHHHHHHH-hCCCcH
Confidence 9999999999999999999999999999999999999998764 6899999997 99999999999999997 999999
Q ss_pred HHHHhch-HHHHHhcChhHHHHHHHhccCCCCCCCCCCCCCcceeeeecCCccccHHHHHHHHHHHHHHHHHHHHHhCCc
Q 005785 304 EEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLR 382 (677)
Q Consensus 304 gDL~~~~-~~L~~rFG~~~~~~L~~~a~G~~~~~~~~~~~rKSis~e~tf~~~~d~~~L~~~L~~La~~L~~rLr~~~l~ 382 (677)
+||++++ ..|.++||...+.+||.+++|++..++.+..++|||+.++||..+.+.+++..+|.+|+++|+.||+++++.
T Consensus 259 gdLa~~~~~~L~~~fG~~~g~~L~~~a~G~d~~~V~~~~~~kSi~~e~tf~~~~~~~~~~~~l~~La~~l~~rLr~~~~~ 338 (420)
T 3osn_A 259 RDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFKKCSSEVEAKNKIEELLASLLNRVCQDGRK 338 (420)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCSCSEEEEEEECSSCCCSSSHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHhhCCHHHHHHHhCchHHHHHHHHhcCCCccccCCCCCCCceeeeeeCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 9999997 899999999888999999999999999888889999999999887788889999999999999999999999
Q ss_pred ccEEEEEEEE-c---CCeeeEEEEEcCCC---------CCCHHHHHHHHHHHHHhhCC--CC--EEEEEEEecCCCcCc
Q 005785 383 GRTLTLKLKT-A---SFEVRTRAVTLQKY---------ISSSEDILKHASVLLKAELP--VS--LRLIGLRVTQFNEDK 444 (677)
Q Consensus 383 ~rtltLklk~-~---~f~~~trs~tl~~~---------t~~~~~L~~~a~~LLe~~lp--~~--VRlIGVrls~L~~~~ 444 (677)
+++|+|++++ + +|...+|+.+++.+ |++.++|++.+..||++.++ .+ ||+|||++++|.+..
T Consensus 339 ~~tv~l~ir~~~~~~~~~~~sr~~~l~~~~~~~l~~~~t~~~~~i~~~a~~Lf~~~~~~~~~~~iRllgv~~~~l~~~~ 417 (420)
T 3osn_A 339 PHTVRLIIRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALN 417 (420)
T ss_dssp EEEEEEEEEEECSSCCCCCEEEEEECCTTTCCC-----CTTHHHHHHHHHHHHHHHSCSSSCCEEEEEEEEEEEEC---
T ss_pred ccEEEEEEEeCCCCCCCceeEEEEECCCccccccccCCCchHHHHHHHHHHHHHHhhcccCCcceeEEEEEEeCcccCc
Confidence 9999999995 3 57778999999986 78889999999999999873 34 999999999998764
No 9
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=100.00 E-value=2.4e-73 Score=629.97 Aligned_cols=368 Identities=21% Similarity=0.280 Sum_probs=325.4
Q ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHhhcc----CCCCeEEEEeCCchhhhcccccCC------CCCCCcE
Q 005785 63 FIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATR----DLSRSWLHVDMDAFYAAVETLSNP------SLKGKPM 132 (677)
Q Consensus 63 ~~~~ri~~~~~~~~~l~~~~~~~~~~~~d~~~~~le~~r----d~~r~I~HIDmDaFyAsVE~~~~P------eLr~kPv 132 (677)
..++|+|+|..|++.++...+..+ ++... +..|+|+||||||||||||++++| +|+++||
T Consensus 16 ~~~srlh~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~r~i~hiD~d~FyaSvE~~~~p~~l~~~~l~~~Pv 85 (434)
T 2aq4_A 16 FAHSRLHHLSAWKANLKDKFLNEN----------IHKYTKITDKDTYIIFHIDFDCFFATVAYLCRSSSFSACDFKRDPI 85 (434)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHT----------TTSCCCCCSSCEEEEEEEEETTTTHHHHHHTCCGGGTTCCTTTSCE
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH----------hhccCCCCCCCceEEEEEecCcHHHHHHHHHcCcccccccccCCcE
Confidence 347899999999997654222111 12222 346899999999999999999999 8999999
Q ss_pred EEe---cCCeEEecCHHHHHcCCCCCCcHHHHHHhCCC---cEEeCCChHHHHHHHHHHHHHHHhc--CCceEEeccCce
Q 005785 133 AVG---TMSMICTANYEARRFGVRAAMPGFIARKLCPE---LIFVPTDFTKYTYYSDLTRKVFCKY--DPNFMAASLDEA 204 (677)
Q Consensus 133 AV~---~~~~V~taNY~ARk~GVr~GMp~~~AkkLCP~---Lvvvp~d~~~Y~~~s~~i~~il~~y--~p~ve~~SiDEa 204 (677)
||+ ++++|+||||+||+|||++|||+++|++|||+ |+++|+||+.|.++|++++.|+.+| +|.||++||||+
T Consensus 86 ~V~~~~~~~~V~a~syeAR~~GV~~gm~~~~A~~lcP~~~~lvv~~~~~~~Y~~~S~~i~~il~~~~~t~~ve~~SiDEa 165 (434)
T 2aq4_A 86 VVCHGTKNSDIASCNYVARSYGIKNGMWVSQAEKMLPNGIKLISLPYTFEQFQLKSEAFYSTLKRLNIFNLILPISIDEA 165 (434)
T ss_dssp EECSCSSSCBCSEECHHHHHTTCCTTCBHHHHHTTCCTTCCCEEECCCHHHHHHHHHHHHHHHHHTTCCSEEEEEETTEE
T ss_pred EEEecCCCCeEEEcCHHHHHcCCCCCCcHHHHHHhCCCCCCEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEcCcee
Confidence 998 46899999999999999999999999999999 9999999999999999999999997 689999999999
Q ss_pred EEe--cchhhhhcCCCHHHHHHHHHHHHHHHh-CCeeEEEecCCHHHHHHHhcccCCCCeEEecCChhHH-HHhhhcCCC
Q 005785 205 YLD--ITEVCRERGISGIEIAEELRTSVYEEA-GLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAV-MTFISSLPI 280 (677)
Q Consensus 205 ~LD--lT~~~~~~g~~~~~la~~IR~~I~~~t-Glt~S~GIA~NklLAKLaS~~~KPnGq~~l~~~~~~i-~~fL~~LPV 280 (677)
||| +|++.+.++.++.++|++||++|+++| |+|||+|||+||++||||++++||||+++++++ ++ .+||++|||
T Consensus 166 flD~~vt~~~~~~~~~~~~la~~Ir~~I~~~~gGlt~svGIa~nk~lAKlAs~~aKp~G~~~l~~~--~~~~~~l~~lpv 243 (434)
T 2aq4_A 166 VCVRIIPDNIHNTNTLNARLCEEIRQEIFQGTNGCTVSIGCSDSLVLARLALKMAKPNGYNITFKS--NLSEEFWSSFKL 243 (434)
T ss_dssp EEEEEECC------CHHHHHHHHHHHHHHHHHSSCCEEEEEESSHHHHHHHHHHHCSSCEECCCGG--GCCHHHHTTCCG
T ss_pred EEcCcCccchhhcCCCHHHHHHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHhcCCCCCEEEECCh--hhHHHHhhcCCc
Confidence 999 999887642389999999999999999 899999999999999999999999999999865 34 689999999
Q ss_pred ccccCCCHHHHHHHHhh-cCCCcHHHHHhc-h-HHHHHhcChhHHHHHHHhccCCCCCCCC-----CC--CCCcceeeee
Q 005785 281 RKIGGIGKVTEHILRDV-FGINTCEEMLQK-G-SLLCAVFSHSTADFFLSVGLGLGSTNTP-----QA--RFRKSISSER 350 (677)
Q Consensus 281 ~kLpGIG~~t~~~L~~~-lGI~T~gDL~~~-~-~~L~~rFG~~~~~~L~~~a~G~~~~~~~-----~~--~~rKSis~e~ 350 (677)
++|||||++++++|++. +||+|++||+++ + ..|.++||...+.++|..++|++..++. +. .++|||+.++
T Consensus 244 ~~l~GiG~~~~~~L~~~~~GI~ti~dL~~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~~~~~~~~~ksi~~~~ 323 (434)
T 2aq4_A 244 DDLPGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVGSKLGMKIHLALQGQDDEESLKILYDPKEVLQRKSLSIDI 323 (434)
T ss_dssp GGSTTCCHHHHHHHHHHTTCCCSHHHHHHHCCHHHHHHHHCSSHHHHHHHHTTTCCCHHHHHHHHCHHHHHSCCCEEEEE
T ss_pred ccccCcCHHHHHHHHHhcCCceEHHHHHhcCCHHHHHHHhCHHHHHHHHHHhcCCCcccccccccCcccCCCCceeEEEE
Confidence 99999999999999832 699999999999 7 8999999987778888999999988763 22 4789999999
Q ss_pred cCCc-cccHHHHHHHHHHHHHHHHHHHHHhCCcccEEEEEEEEc---------------CCeeeEEEEEcCCCCCCHHHH
Q 005785 351 TFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTA---------------SFEVRTRAVTLQKYISSSEDI 414 (677)
Q Consensus 351 tf~~-~~d~~~L~~~L~~La~~L~~rLr~~~l~~rtltLklk~~---------------~f~~~trs~tl~~~t~~~~~L 414 (677)
||+. +.+.+++..+|.+|+++|+.+|+++++.+++|+|++++. +|...+++++++.||++...|
T Consensus 324 tf~~~~~~~~~l~~~l~~l~~~l~~rLr~~~~~~~~v~l~l~~r~~~~~~~~~ky~g~gd~~~~s~s~~l~~pt~~~~~i 403 (434)
T 2aq4_A 324 NWGIRFKNITQVDLFIERGCQYLLEKLNEINKTTSQITLKLMRRCKDAPIEPPKYMGMGRCDSFSRSSRLGIPTNEFGII 403 (434)
T ss_dssp CSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECTTSCSSCSSTTCCCSEEEEEEEEEEEEEECCHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEecCCCCcccccccCCCCcccceEEeecCCCcCCHHHH
Confidence 9997 789999999999999999999999999999999999842 356889999999999999999
Q ss_pred HHHHHHHHHhhC--CCCEEEEEEEecCCCc
Q 005785 415 LKHASVLLKAEL--PVSLRLIGLRVTQFNE 442 (677)
Q Consensus 415 ~~~a~~LLe~~l--p~~VRlIGVrls~L~~ 442 (677)
++.+..+|++.+ +.+||+|||++++|.+
T Consensus 404 ~~~a~~ll~~~~~~~~~vR~lgv~~s~l~~ 433 (434)
T 2aq4_A 404 ATEMKSLYRTLGCPPMELRGLALQFNKLVD 433 (434)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCEEEEEEEEeCccc
Confidence 999999999985 4689999999999864
No 10
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=100.00 E-value=2.2e-71 Score=614.22 Aligned_cols=336 Identities=28% Similarity=0.445 Sum_probs=307.8
Q ss_pred cCCCCeEEEEeCCchhhhcccccCCCCCCCcEEEecC-----CeEEecCHHHHHcCCCCCCcHHHHHHhCCCcEEeC---
Q 005785 101 RDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTM-----SMICTANYEARRFGVRAAMPGFIARKLCPELIFVP--- 172 (677)
Q Consensus 101 rd~~r~I~HIDmDaFyAsVE~~~~PeLr~kPvAV~~~-----~~V~taNY~ARk~GVr~GMp~~~AkkLCP~Lvvvp--- 172 (677)
+...|+|+||||||||||||++++|+|+++||||+++ |+|+||||+||+|||++|||+++|+++||+|++++
T Consensus 6 ~~~~r~I~hiD~d~FyAsvE~~~~P~L~~kPvvV~~~~~~~~g~viA~syeAR~~GV~~gm~~~~A~~lcP~l~~~~~~~ 85 (435)
T 4ecq_A 6 TGQDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWADDAKKLCPDLLLAQVRE 85 (435)
T ss_dssp CSCSCCEEEEEETTHHHHHHHHHCGGGTTSCEEEEECSTTTTCEEEEECHHHHTTTCCTTCBHHHHHHHCTTCEEEECCE
T ss_pred CCCCcEEEEEccchHHHHHHhhhCccccCCcEEEeccCCCCCCeEEEeCHHHHHhCCCCCCcHHHHHHhCCCeEEecccc
Confidence 3457899999999999999999999999999999863 68999999999999999999999999999999997
Q ss_pred ----CChHHHHHHHHHHHHHHHhcCCceEEeccCceEEecchhhh-----hcCCC-------------------------
Q 005785 173 ----TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR-----ERGIS------------------------- 218 (677)
Q Consensus 173 ----~d~~~Y~~~s~~i~~il~~y~p~ve~~SiDEa~LDlT~~~~-----~~g~~------------------------- 218 (677)
+|++.|+++|.+|++||.+|+ .||++||||+|||||++.+ +||..
T Consensus 86 ~~~~~~~~~Y~~~S~~i~~il~~~~-~vE~~SiDEafLDlT~~~~~~l~~l~g~~~~~~~~~~~~~~g~~~~~~~~~~~~ 164 (435)
T 4ecq_A 86 SRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETV 164 (435)
T ss_dssp ETTEECCHHHHHHHHHHHHHHHHHS-CEEEEETTEEEEECHHHHHHHHHHHTTCCCCGGGCTTEEETTCSCCCC-----C
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhcC-ceeecccceEEEECccchhhcchhccccccccccccccccccCCCccccccccc
Confidence 799999999999999999999 8999999999999999865 33310
Q ss_pred -------------------------------HHHHHHHHHHHHHHHhCCeeEEEecCCHHHHHHHhcccCCCCeEEecCC
Q 005785 219 -------------------------------GIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPND 267 (677)
Q Consensus 219 -------------------------------~~~la~~IR~~I~~~tGlt~S~GIA~NklLAKLaS~~~KPnGq~~l~~~ 267 (677)
+..+|++||++|+++||+|||+|||+||++||||++++||||+++++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ia~~Ir~~I~~~~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~vv~~~ 244 (435)
T 4ecq_A 165 QKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHG 244 (435)
T ss_dssp SHHHHHHHHHHHHHHHCCTTCTTCHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHSCSSCEEECCGG
T ss_pred chhhhhcccccccccccccccccchhhhhhHHHHHHHHHHHHHHHHhCCcEEEEecCCHHHHHHHhccCCCCceEEEehh
Confidence 1368999999999999999999999999999999999999999999764
Q ss_pred hhHHHHhhhcCCCccccCCCHHHHHH-HHhhcCCCcHHHHHhch-HHHHHhcChhHHHHHHHhccCCCCCCCCCCCCCcc
Q 005785 268 RMAVMTFISSLPIRKIGGIGKVTEHI-LRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKS 345 (677)
Q Consensus 268 ~~~i~~fL~~LPV~kLpGIG~~t~~~-L~~~lGI~T~gDL~~~~-~~L~~rFG~~~~~~L~~~a~G~~~~~~~~~~~rKS 345 (677)
.+.+||++|||++|||||+++.++ |++ +||+|++||++++ ..|.++||...+.+||..++|++..++.+..++||
T Consensus 245 --~~~~~L~~lpv~~l~GiG~~~~~~lL~~-lGI~TigdLa~~~~~~L~~~fG~~~g~~L~~~a~G~d~~~v~~~~~~ks 321 (435)
T 4ecq_A 245 --SVPQLFSQMPIRKIRSLGGKLGASVIEI-LGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKT 321 (435)
T ss_dssp --GHHHHHHTCBGGGSTTCSSHHHHHHHHH-HTCCBGGGGGGSCHHHHHHHHCHHHHHHHHHHTTTCCCCCCCCBCSCSC
T ss_pred --HHHHHHhhCCHHHhcCCCHHHHHHHHHH-cCCCcHHHHhhCCHHHHHHHhCccHHHHHHHHhhCCCCcccCCCCCCCe
Confidence 689999999999999999998766 786 9999999999997 89999999877888989999999999888888999
Q ss_pred eeeeecCCc---cccHHHHHHHHHHHHHHHHHHHHHh----CCcccEEEEEEEEcC---CeeeEEEEEcCCCCCCHHHHH
Q 005785 346 ISSERTFSV---TEDKALLYRKLAEIAEMLSADMQKE----GLRGRTLTLKLKTAS---FEVRTRAVTLQKYISSSEDIL 415 (677)
Q Consensus 346 is~e~tf~~---~~d~~~L~~~L~~La~~L~~rLr~~----~l~~rtltLklk~~~---f~~~trs~tl~~~t~~~~~L~ 415 (677)
|+.+++|+. +.+.+++..+|..|+++|+.||+++ ++.+++|+|++++.+ +...+|+.+++. +++..|.
T Consensus 322 i~~~~tf~~~~~i~~~~~l~~~l~~la~~l~~rLr~~~~~~~~~~~~l~v~ir~~~~~~~~~~~R~~~l~~--~~~~~i~ 399 (435)
T 4ecq_A 322 IGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKRLSSLRRCCALTR--YDAHKMS 399 (435)
T ss_dssp EEEEEECCGGGCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEEEEEETTCCSSCSEEEEEECCS--CCHHHHH
T ss_pred eeeeEEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCceEEEEEEEEEeCCCCCCceeEEeccCCC--CCHHHHH
Confidence 999999996 5799999999999999999999997 899999999999976 467899999975 6799999
Q ss_pred HHHHHHHHhhCC--------CCEEEEEEEecCCCc
Q 005785 416 KHASVLLKAELP--------VSLRLIGLRVTQFNE 442 (677)
Q Consensus 416 ~~a~~LLe~~lp--------~~VRlIGVrls~L~~ 442 (677)
..+..||++.+. .|||+|||++++|++
T Consensus 400 ~~a~~L~~~~~~~~~~~~~~~pir~lgvs~s~f~~ 434 (435)
T 4ecq_A 400 HDAFTVIKNCNTSGIQTEWSPPLTMLFLCATKFSA 434 (435)
T ss_dssp HHHHHHHGGGCCCSSTTEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhhccccccCCCCeeEEEEEEeeccc
Confidence 999999999873 479999999999975
No 11
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=100.00 E-value=4.9e-71 Score=621.81 Aligned_cols=341 Identities=21% Similarity=0.270 Sum_probs=313.7
Q ss_pred cCCCCeEEEEeCCchhhhcccccCCCCCCCcEEEecCCeEEecCHHHHHcCCCCCCcHHHHHHhCCCcEEe---------
Q 005785 101 RDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFV--------- 171 (677)
Q Consensus 101 rd~~r~I~HIDmDaFyAsVE~~~~PeLr~kPvAV~~~~~V~taNY~ARk~GVr~GMp~~~AkkLCP~Lvvv--------- 171 (677)
....|+|+||||||||||||++++|+|+++||||+++++|+||||+||+|||++|||+++|+++||+|+++
T Consensus 27 ~~p~r~I~hiD~d~FyAsvE~~~~p~l~~~Pv~v~~~~~via~sy~AR~~GI~~~~~~~~A~~~CP~l~~v~~~v~~~ge 106 (520)
T 3mfi_A 27 ESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWNSIIAVSYAARKYGISRMDTIQEALKKCSNLIPIHTAVFKKGE 106 (520)
T ss_dssp GSTTCCEEEEEETTHHHHHHHHHTTCCTTSCEEEEETTEEEEECHHHHTTTCCTTCBHHHHHTTCTTCEEEECEEEETTC
T ss_pred cCCCCEEEEEecccHHHHHHHHhCccccCCcEEEecCCEEEEeCHHHHHcCCCCCCcHHHHHHhCccceEeeeeeeeccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred --------------------C-----CChHHHHHHHHHHHHHHHhcCCceEEeccCceEEecchhhh-------------
Q 005785 172 --------------------P-----TDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR------------- 213 (677)
Q Consensus 172 --------------------p-----~d~~~Y~~~s~~i~~il~~y~p~ve~~SiDEa~LDlT~~~~------------- 213 (677)
+ ++++.|+++|++|++||.+|+|.||++||||+|||||+++.
T Consensus 107 ~~~~y~~~~~~~~~~~~~~~~~~~~k~~~~~Yr~~S~~i~~il~~~~~~vE~~SIDEaflDlt~~~~~~l~~~~~~~~~~ 186 (520)
T 3mfi_A 107 DFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRESRKALAIFKWACDLVERASIDEVFLDLGRICFNMLMFDNEYELTG 186 (520)
T ss_dssp SCEECCTTCSTTCSCTTSCCCTTSEEEECHHHHHHHHHHHHHHHHHCSCEEEEETTEEEEECHHHHHHHHHHCSSCEEET
T ss_pred ccccccccccccccccccccCcccccCCHHHHHHHHHHHHHHHHHhCCCeEEeccceEEEEcCcchhhcccccccccccc
Confidence 3 38999999999999999999999999999999999998751
Q ss_pred -------------h----------------------------cC---------------CCHHHHHHHHHHHHHHHhCCe
Q 005785 214 -------------E----------------------------RG---------------ISGIEIAEELRTSVYEEAGLT 237 (677)
Q Consensus 214 -------------~----------------------------~g---------------~~~~~la~~IR~~I~~~tGlt 237 (677)
. |+ ..+.++|++||++|+++||||
T Consensus 187 ~~~~~~~~~~l~~~~~~g~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ia~~IR~~I~~~tGlt 266 (520)
T 3mfi_A 187 DLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVILALGSQVCKGIRDSIKDILGYT 266 (520)
T ss_dssp TEEHHHHTHHHHHHHHHTCCCTTSEEECCCGGGGGCCCCSEECCTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccccchhhhhhccccccccccccccccccchhcccccccccccccccccccccccccchHHHHHHHHHHHHHHHhCCc
Confidence 0 11 026789999999999999999
Q ss_pred eEEEecCCHHHHHHHhcccCCCCeEEecCChhHHHHhhhc--CCCccccCCCHHHHHHHHhhc-CC---CcH--------
Q 005785 238 CSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISS--LPIRKIGGIGKVTEHILRDVF-GI---NTC-------- 303 (677)
Q Consensus 238 ~S~GIA~NklLAKLaS~~~KPnGq~~l~~~~~~i~~fL~~--LPV~kLpGIG~~t~~~L~~~l-GI---~T~-------- 303 (677)
||||||+||+||||||+++||||+++++++ .+.+||++ +||++|||||++++++|++ + || +|+
T Consensus 267 ~SvGIa~nK~LAKlAs~~~KP~G~~vi~~~--~~~~fL~~~~lPV~~l~GIG~~t~~~L~~-llGI~~~~ti~~i~~l~~ 343 (520)
T 3mfi_A 267 TSCGLSSTKNVCKLASNYKKPDAQTIVKND--CLLDFLDCGKFEITSFWTLGGVLGKELID-VLDLPHENSIKHIRETWP 343 (520)
T ss_dssp EEEEEESSHHHHHHHHTTSCSSEEEECCGG--GHHHHHTSSSCCGGGSTTCSSHHHHHHHH-HTTCCSSSHHHHHHHHSC
T ss_pred EEEEEeCCHHHHHHHhcccCCCCeEEcChH--HHHHHhhccCCcHHHhcCCCHHHHHHHHH-hcCCCcccchhhhhhccC
Confidence 999999999999999999999999999764 68999998 9999999999999999997 7 99 665
Q ss_pred ---HHHHhch-HHHHHhcCh------------hHHHHHHHhccCCCCCCCCCCCCCcceeeeecCCc--cccHHHHHHHH
Q 005785 304 ---EEMLQKG-SLLCAVFSH------------STADFFLSVGLGLGSTNTPQARFRKSISSERTFSV--TEDKALLYRKL 365 (677)
Q Consensus 304 ---gDL~~~~-~~L~~rFG~------------~~~~~L~~~a~G~~~~~~~~~~~rKSis~e~tf~~--~~d~~~L~~~L 365 (677)
+||++++ ..|.++||. ..+.+++..++|++..++.+..++|||+++++|.. +.+.+++..+|
T Consensus 344 ~t~~dL~~~~~~~L~~~fG~~~~~~~d~~~~g~~g~~L~~~arGid~~~V~~~~~~KSi~~~~tf~~~~i~~~~~l~~~L 423 (520)
T 3mfi_A 344 DNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKNLRGKSCNSIVDCISWL 423 (520)
T ss_dssp SCHHHHHHHHHHHHHSTTCC---CCCCTTCHHHHHHHHHHHTTTCCCCCCCCCCSCSCEEEEEECCTTTTCSHHHHHHHH
T ss_pred CCHHHHHhcCHHHHHHhcCccccccccchhhhHHHHHHHHHhCCCCCCCCCCCCCCCceeeEEEcCCCCcCCHHHHHHHH
Confidence 7888776 789999995 67888999999999999988889999999999996 58999999999
Q ss_pred HHHHHHHHHHHHHhC------CcccEEEEEEEEcCCeeeEEEEEcCCCC--CCHHHHHHHHHHHHHhhC-------CCCE
Q 005785 366 AEIAEMLSADMQKEG------LRGRTLTLKLKTASFEVRTRAVTLQKYI--SSSEDILKHASVLLKAEL-------PVSL 430 (677)
Q Consensus 366 ~~La~~L~~rLr~~~------l~~rtltLklk~~~f~~~trs~tl~~~t--~~~~~L~~~a~~LLe~~l-------p~~V 430 (677)
..|+++|+.||++.+ +.+++|+|++++++|...+++.+++.|| ++..+|++.|..||++.+ +.+|
T Consensus 424 ~~la~~l~~rLr~~~~~~~~~~~~rtvtl~ir~~df~~~trs~~l~~pt~~~~~~~I~~~a~~Ll~~~~~~~~~~~~~~i 503 (520)
T 3mfi_A 424 EVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEVYRKSGPVAYKGINFQSHELLKVGIKFVTDLDIKGKNKSYYPL 503 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHTEEEEEEEEEEEEECTTCCEEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHTTTSSCSSC
T ss_pred HHHHHHHHHHHHhcccccccceeeeEEEEEEEeCCCCcceEEEECCCCCccCCHHHHHHHHHHHHHHHhhhcccccCCce
Confidence 999999999999984 9999999999999999999999999999 899999999999999874 3689
Q ss_pred EEEEEEecCCCcCc
Q 005785 431 RLIGLRVTQFNEDK 444 (677)
Q Consensus 431 RlIGVrls~L~~~~ 444 (677)
|+|||++++|....
T Consensus 504 RliGV~~s~Le~~~ 517 (520)
T 3mfi_A 504 TKLSMTITNFDIID 517 (520)
T ss_dssp SEEEEEEEEEEEEE
T ss_pred eEEEEEEeCCEecC
Confidence 99999999997654
No 12
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=100.00 E-value=4.1e-59 Score=472.56 Aligned_cols=207 Identities=38% Similarity=0.608 Sum_probs=191.1
Q ss_pred CCeEEEEeCCchhhhcccccCCCCCCCcEEEe---c----CCeEEecCHHHHHcCCCCCCcHHHHHHhCCCcEEeCCChH
Q 005785 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVG---T----MSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFT 176 (677)
Q Consensus 104 ~r~I~HIDmDaFyAsVE~~~~PeLr~kPvAV~---~----~~~V~taNY~ARk~GVr~GMp~~~AkkLCP~Lvvvp~d~~ 176 (677)
..+|+||||||||||||++++|+|+++||||+ + .|+|+||||+||+|||++|||+++|++|||+|+++|+||+
T Consensus 5 ~~~~~hiD~d~FyasvE~~~~p~L~~~Pv~V~~~~~~~~~~g~V~a~s~~Ar~~GV~~gm~~~~A~~lcP~l~v~~~~~~ 84 (221)
T 1im4_A 5 HHIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKP 84 (221)
T ss_dssp SCCEEEEEETTHHHHHHHHHSGGGTTSCEEEEEEC----CCEEEEEECHHHHTTTCCTTCBHHHHHHHCTTSEEEECCHH
T ss_pred ceEEEEEecCcHHHHHHHHHCccccCCcEEEEecCCcCCCCCEEEECCHHHHHcCCCCCCcHHHHHHHCCCeEEECCCHH
Confidence 56899999999999999999999999999998 3 3799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeccCceEEecchhhh-hcCCCHHHHHHHHHHHHHHHhCCeeEEEecCCHHHHHHHhcc
Q 005785 177 KYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCR-ERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDI 255 (677)
Q Consensus 177 ~Y~~~s~~i~~il~~y~p~ve~~SiDEa~LDlT~~~~-~~g~~~~~la~~IR~~I~~~tGlt~S~GIA~NklLAKLaS~~ 255 (677)
.|.++|++++.|+++|+|.||++|+||+|||+|++.+ +|| ++.++|++||++|+++||+|||+|||+||++||||++.
T Consensus 85 ~Y~~~s~~i~~~l~~~tp~ve~~siDE~~lDvt~~~~~l~~-~~~~la~~ir~~i~~~~Gl~~svGia~nk~lAKlas~~ 163 (221)
T 1im4_A 85 IYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFE-NGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADK 163 (221)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTTCHH-HHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCCeEEEEecchhhhccC-CHHHHHHHHHHHHHHHhCCeEEEEeCCCHHHHHHHHhh
Confidence 9999999999999999999999999999999999998 888 89999999999999999999999999999999999999
Q ss_pred cCCCCeEEecCChhHHHHhhhcCCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHH
Q 005785 256 NKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC 314 (677)
Q Consensus 256 ~KPnGq~~l~~~~~~i~~fL~~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~ 314 (677)
+||||+++++++ .+.+||++|||++|||||+++.++|++ +||+|++||+++| ..|.
T Consensus 164 ~Kp~g~~~~~~~--~~~~~L~~lpv~~l~giG~~~~~~L~~-~Gi~TigdL~~~~~~~L~ 220 (221)
T 1im4_A 164 SKPNGLGVIRPT--EVQDFLNELDIDEIPGIGSVLARRLNE-LGIQKLRDILSKNYNELE 220 (221)
T ss_dssp TCSSCEEECCGG--GHHHHHHTCBGGGSTTCCHHHHHHHHH-TTCCBTTC----------
T ss_pred cCCCCEEEECHH--HHHHHHHhCCcccccCCCHHHHHHHHH-cCCCcHHHHHCCCHHHhh
Confidence 999999999864 689999999999999999999999997 9999999999987 4443
No 13
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1
Probab=99.38 E-value=2.7e-12 Score=116.34 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=90.7
Q ss_pred cceeeeecCCc-cccHHHHHHHHHHHHHHHHHHHHHhCCcccEEE---EEEEEcCCeeeEEEEEcCCCCCCHHHHHHHHH
Q 005785 344 KSISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLT---LKLKTASFEVRTRAVTLQKYISSSEDILKHAS 419 (677)
Q Consensus 344 KSis~e~tf~~-~~d~~~L~~~L~~La~~L~~rLr~~~l~~rtlt---Lklk~~~f~~~trs~tl~~~t~~~~~L~~~a~ 419 (677)
..+|.|.||+. +.+.+++...|..|+++++.||++.+ .+++|+ |++++++|...+++.+ .|+++..+|+..|.
T Consensus 5 ~~~g~e~Tf~~d~~~~~~l~~~l~~l~~~v~~rLr~~~-~~~tV~k~~vkir~~dF~~~trs~t--~pt~~~~~i~~~a~ 81 (115)
T 1unn_C 5 HHVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVK-PDLLIARQGVKLKFDDFQQTTQEHV--WPRLNKADLIATAR 81 (115)
T ss_dssp CEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC-TTCBCSEEEEEEEETTSCEEEEEEE--CSBCCHHHHHHHHH
T ss_pred CCCccceECCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCCeEEEeEEEEEECCCCeEEeccc--cCcCCHHHHHHHHH
Confidence 45899999997 68999999999999999999999999 999999 9999999999999998 69999999999999
Q ss_pred HHHHhhCC-CCEEEEEEEecCCCcCc
Q 005785 420 VLLKAELP-VSLRLIGLRVTQFNEDK 444 (677)
Q Consensus 420 ~LLe~~lp-~~VRlIGVrls~L~~~~ 444 (677)
.||++.++ .+||++||++++|.+..
T Consensus 82 ~Ll~~~~~~~~vRllGV~ls~L~~~~ 107 (115)
T 1unn_C 82 KTWDERRGGRGVRLVGLHVTLLDPQM 107 (115)
T ss_dssp HHHHHHCTTCCEEEEEEEEECCCCCC
T ss_pred HHHHhhhcCCCEEEEEEEEeCCCCCC
Confidence 99998864 68999999999997653
No 14
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=98.95 E-value=9.2e-11 Score=85.75 Aligned_cols=36 Identities=36% Similarity=0.645 Sum_probs=31.7
Q ss_pred ccccccccccccCCCCCCChhhhhhccchhHHHHHhhhh
Q 005785 584 FIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKE 622 (677)
Q Consensus 584 ~~~~~~y~c~~c~~~~~~~~~~~~~eh~d~h~a~~~~~~ 622 (677)
..|.+.|.|+.||..+| ++++|||.|||||+.||+.
T Consensus 4 ~~~~~~~~C~~C~~~i~---~~~~~EH~D~H~A~~Lq~s 39 (39)
T 2i5o_A 4 MAAEDQVPCEKCGSLVP---VWDMPEHMDYHFALELQKS 39 (39)
T ss_dssp --CCCEEECTTTCCEEE---GGGHHHHHHHHHHHHHTTC
T ss_pred CCcCCCcccccccCcCC---cccccchhhHHHHHHHhcC
Confidence 45778899999999999 7899999999999999973
No 15
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=94.22 E-value=0.053 Score=47.03 Aligned_cols=49 Identities=24% Similarity=0.236 Sum_probs=35.7
Q ss_pred CCccccCCCHHHHHHHHhhcCCCcHHHHHhch-H----HHHHhcChhHHHHHHHh
Q 005785 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-S----LLCAVFSHSTADFFLSV 328 (677)
Q Consensus 279 PV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~----~L~~rFG~~~~~~L~~~ 328 (677)
.|++||+||+++++.|.+ .||+|+.||..+. . .|++.........||.+
T Consensus 5 ~L~dLPNig~~~e~~L~~-~GI~t~~~Lr~~Ga~~ay~rLk~~~~~~~~~~L~aL 58 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLIK-AGIKTPVELKDVGSKEAFLRIWENDSSVCMSELYAL 58 (93)
T ss_dssp CGGGSTTCCHHHHHHHHH-TTCCSHHHHHHHCHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHH-cCCCCHHHHHhCCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 378999999999999997 9999999998874 2 23343333344555544
No 16
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=94.02 E-value=0.044 Score=47.57 Aligned_cols=31 Identities=35% Similarity=0.433 Sum_probs=28.4
Q ss_pred CCccccCCCHHHHHHHHhhcCCCcHHHHHhch
Q 005785 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG 310 (677)
Q Consensus 279 PV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~ 310 (677)
-|++||+||+++++.|.+ +||+|+.||..+.
T Consensus 5 ~L~~LPNiG~~~e~~L~~-vGI~s~e~L~~~G 35 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLIK-AGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHH-TTCCSHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHH-cCCCCHHHHHhCC
Confidence 478999999999999997 9999999998874
No 17
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=93.23 E-value=0.064 Score=44.01 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=39.2
Q ss_pred CccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcC--hhHHHHHHHhcc
Q 005785 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS--HSTADFFLSVGL 330 (677)
Q Consensus 280 V~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG--~~~~~~L~~~a~ 330 (677)
|..|+|||+.+..+|.. .||+|+.||+..+ ..|....| ......+...++
T Consensus 9 l~~L~Gi~~~~~~kL~e-~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr 61 (70)
T 1wcn_A 9 LLNLEGVDRDLAFKLAA-RGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAAR 61 (70)
T ss_dssp HHSSTTCCHHHHHHHHT-TTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHH-cCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 56678999999999997 8999999999986 77877666 445555544443
No 18
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=89.29 E-value=0.5 Score=39.02 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=40.9
Q ss_pred hhcCCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHH--hcChhHHHHHH
Q 005785 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCA--VFSHSTADFFL 326 (677)
Q Consensus 275 L~~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~--rFG~~~~~~L~ 326 (677)
+...||..+ ++.......|++ .||+|++||.+.. ..|.+ -||+++..-+.
T Consensus 6 ~l~~~Ie~L-~LS~Ra~NcLkr-agI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~ 58 (73)
T 1z3e_B 6 VLEMTIEEL-DLSVRSYNCLKR-AGINTVQELANKTEEDMMKVRNLGRKSLEEVK 58 (73)
T ss_dssp HHTCBGGGS-CCBHHHHHHHHH-TTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHH
T ss_pred hhcCcHHHh-CCCHHHHHHHHH-cCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHH
Confidence 345899998 899999999997 8999999999997 66654 58988766554
No 19
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=84.27 E-value=1.2 Score=35.44 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=37.7
Q ss_pred CccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcChhH-HHHHHHh
Q 005785 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHST-ADFFLSV 328 (677)
Q Consensus 280 V~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG~~~-~~~L~~~ 328 (677)
+..|||||++..+.|-+ -..++.+|.+.. .+|....|... +..++..
T Consensus 6 L~~IpGIG~kr~~~LL~--~Fgs~~~i~~As~eeL~~vig~~~~A~~I~~~ 54 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMH--HVKNIAELAALSQDELTSILGNAANAKQLYDF 54 (63)
T ss_dssp HHTSTTCCHHHHHHHHH--HCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHH--HcCCHHHHHHCCHHHHHHHcCchHHHHHHHHH
Confidence 56789999999998875 456899998886 78888888877 7777654
No 20
>1qw2_A Conserved hypothetical protein TA1206; structural genomics, beta/alpha, antiparallel beta sandwich, protein structure initiative; 1.50A {Thermoplasma acidophilum} SCOP: d.249.1.1
Probab=84.17 E-value=0.45 Score=41.69 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=25.0
Q ss_pred CeEEecCHHHHHcCCCCCCcHHHHHHh
Q 005785 138 SMICTANYEARRFGVRAAMPGFIARKL 164 (677)
Q Consensus 138 ~~V~taNY~ARk~GVr~GMp~~~AkkL 164 (677)
+-|.++|..|++.||+.||++.+|..+
T Consensus 74 a~i~~vt~~A~elGI~~GM~g~eAL~k 100 (102)
T 1qw2_A 74 AKVVEASQEAQKVGINPGDVLRNVIDK 100 (102)
T ss_dssp SBCSEECHHHHHTTCCTTCBHHHHGGG
T ss_pred ChHHHHHHHHHHhCCCCCCCHHHHHHh
Confidence 688999999999999999999999864
No 21
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=83.04 E-value=0.94 Score=38.00 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=40.8
Q ss_pred hhcCCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHH--HhcChhHHHHHH
Q 005785 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC--AVFSHSTADFFL 326 (677)
Q Consensus 275 L~~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~--~rFG~~~~~~L~ 326 (677)
+-..||..| ++.......|++ .||+|++||.+.. ..|. +-||+++..-+.
T Consensus 13 ~l~~~Ie~L-~LS~Ra~NcLk~-agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~ 65 (79)
T 3gfk_B 13 VLEMTIEEL-DLSVRSYNCLKR-AGINTVQELANKTEEDMMKVRNLGRKSLEEVK 65 (79)
T ss_dssp GGGCBGGGS-CCBHHHHHHHHH-TTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHH
T ss_pred HhcCcHHHh-CCCHHHHHHHHH-hCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHH
Confidence 456799998 899999999997 8999999999986 5554 458888766553
No 22
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=82.99 E-value=1.1 Score=38.02 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=38.0
Q ss_pred CccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcChhH-HHHHHHh
Q 005785 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHST-ADFFLSV 328 (677)
Q Consensus 280 V~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG~~~-~~~L~~~ 328 (677)
|..|||||++..+.|-+ -+.++.+|.+.. .+|....|... +..++..
T Consensus 20 L~~IpGIG~kr~~~LL~--~FgSl~~i~~AS~eEL~~vig~~~~A~~I~~~ 68 (84)
T 1z00_B 20 LLKMPGVNAKNCRSLMH--HVKNIAELAALSQDELTSILGNAANAKQLYDF 68 (84)
T ss_dssp HHTCSSCCHHHHHHHHH--HSSCHHHHHHSCHHHHHHHHSCHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHH--HcCCHHHHHHCCHHHHHHHhCchHHHHHHHHH
Confidence 55688999999999875 577999999987 78888888877 7766654
No 23
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=82.59 E-value=2.1 Score=36.46 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=40.7
Q ss_pred hcCCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHH--HhcChhHHHHHHH
Q 005785 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC--AVFSHSTADFFLS 327 (677)
Q Consensus 276 ~~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~--~rFG~~~~~~L~~ 327 (677)
-..||..+ ++.......|++ .||+|++||.+.. ..|. +-||+++..-+..
T Consensus 10 l~~~I~~L-~LSvRa~NcLkr-agI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~ 62 (86)
T 3k4g_A 10 LLRPVDDL-ELTVRSANCLXA-EAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXD 62 (86)
T ss_dssp GGSBGGGG-CCCHHHHHHHHH-TTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHH
T ss_pred HhCcHHHh-CCCHHHHHHHHH-cCCCcHHHHHhCCHHHHhhccccCcccHHHHHH
Confidence 35689998 899999999997 8999999999986 5554 5689887766543
No 24
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=81.63 E-value=0.99 Score=38.56 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=28.0
Q ss_pred hhcCCCccccCCCHHHHHHHHhhcCCCcHHHHHh
Q 005785 275 ISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQ 308 (677)
Q Consensus 275 L~~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~ 308 (677)
|..-||..|||||+++..+|.+ -|+.+.-+|+-
T Consensus 15 mgeK~V~evpGIG~~~~~~L~~-~Gf~kAy~lLG 47 (89)
T 1ci4_A 15 MGEKPVGSLAGIGEVLGKKLEE-RGFDKAYVVLG 47 (89)
T ss_dssp CTTCCGGGSTTCCHHHHHHHHH-TTCCSHHHHHH
T ss_pred CCCCCcccCCCcCHHHHHHHHH-cCccHHHHHHH
Confidence 4456899999999999999997 89999877643
No 25
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=77.90 E-value=1.4 Score=38.39 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=39.8
Q ss_pred cCCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHH--HhcChhHHHHHH
Q 005785 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLC--AVFSHSTADFFL 326 (677)
Q Consensus 277 ~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~--~rFG~~~~~~L~ 326 (677)
..||..| ++.......|++ .||+|++||.+.. ..|. +-||+++..-+.
T Consensus 23 ~~~Ie~L-~LSvRs~NcLkr-agI~Tv~dL~~~se~dLlki~n~G~KSl~EI~ 73 (98)
T 1coo_A 23 LRPVDDL-ELTVRSANCLKA-EAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 73 (98)
T ss_dssp HSBGGGG-TCCTTTHHHHHT-TTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHH
T ss_pred cCcHHHh-CCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHH
Confidence 3899998 899999999997 8999999999997 5554 459998776553
No 26
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=72.09 E-value=1.1 Score=40.18 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=39.6
Q ss_pred cCCCcccc--CCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHh--cChhHHHHHHHhcc
Q 005785 277 SLPIRKIG--GIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSVGL 330 (677)
Q Consensus 277 ~LPV~kLp--GIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~r--FG~~~~~~L~~~a~ 330 (677)
++||.+|+ |||+.+..+|.+ -|++|+.+|+..+ ..|... +|+....-+...++
T Consensus 22 ~~~I~~L~~~GIg~~~i~kL~e-AG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~ 79 (114)
T 1b22_A 22 PQPISRLEQCGINANDVKKLEE-AGFHTVEAVAYAPKKELINIKGISEAKADKILAEAA 79 (114)
T ss_dssp CCCHHHHHHTTCSHHHHHHHHT-TCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHH
T ss_pred CccHHHHHhcCCCHHHHHHHHH-cCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 45888888 999999999997 8999999998875 666644 34445555544443
No 27
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=71.11 E-value=3 Score=34.17 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=33.8
Q ss_pred cCCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHh--cChhHHHHHH
Q 005785 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFL 326 (677)
Q Consensus 277 ~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~r--FG~~~~~~L~ 326 (677)
...+..+||||+++++.|-+.+| ++.+|.... ..|... +|+.....+.
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~fg--sl~~l~~a~~eeL~~i~GIG~~~a~~I~ 73 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKYMG--GLQGLRNASVEEIAKVPGISQGLAEKIF 73 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHHHS--CHHHHHHCCHHHHTTSSSTTSHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHCCCCCHHHHHHHH
Confidence 34577899999999998876555 688887765 666655 5665555443
No 28
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=66.80 E-value=6.4 Score=32.97 Aligned_cols=47 Identities=17% Similarity=0.332 Sum_probs=35.0
Q ss_pred CccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHh--cChhHHHHHHHh
Q 005785 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSV 328 (677)
Q Consensus 280 V~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~r--FG~~~~~~L~~~ 328 (677)
+..+||||+++++.|-+.+| ++.+|.... ..|... +|+.....+...
T Consensus 21 L~~IpgIG~~~A~~Ll~~fg--sl~~l~~a~~~eL~~i~GIG~~~a~~I~~~ 70 (89)
T 1z00_A 21 LTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDV 70 (89)
T ss_dssp HTTSSSCCHHHHHHHHHHTC--BHHHHHHCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHH
Confidence 55689999999998876454 788888775 677766 777766666543
No 29
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=65.68 E-value=5.8 Score=33.46 Aligned_cols=47 Identities=17% Similarity=0.332 Sum_probs=34.3
Q ss_pred CccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHh--cChhHHHHHHHh
Q 005785 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSV 328 (677)
Q Consensus 280 V~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~r--FG~~~~~~L~~~ 328 (677)
|..+||||+++++.|-+.+| ++.+|.... ..|... +|......+...
T Consensus 34 L~~IpgIG~~~A~~Ll~~fg--s~~~l~~as~~eL~~i~GIG~~~a~~I~~~ 83 (91)
T 2a1j_B 34 LTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDV 83 (91)
T ss_dssp HTTSTTCCHHHHHHHHHHHS--SHHHHHSCCHHHHHTSSSCCSHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHH
Confidence 55689999999998876455 688887775 667766 677766666443
No 30
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=65.00 E-value=5 Score=42.32 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=35.0
Q ss_pred hcCCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcC
Q 005785 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 318 (677)
Q Consensus 276 ~~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG 318 (677)
...+|.+||||++.+.++|++ -|++|+.+++..+ ..|.+.-|
T Consensus 33 ~~~~l~~l~Gi~~~~~~kL~~-ag~~t~~~~~~~~~~~L~~~~~ 75 (349)
T 1pzn_A 33 IIRSIEDLPGVGPATAEKLRE-AGYDTLEAIAVASPIELKEVAG 75 (349)
T ss_dssp --CCSSCCTTCCHHHHHHHHT-TTCCSHHHHHTCCHHHHHHHHC
T ss_pred ccccHHHcCCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHhhcC
Confidence 345899999999999999997 8999999999885 67776655
No 31
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=64.41 E-value=5.5 Score=41.61 Aligned_cols=41 Identities=10% Similarity=0.190 Sum_probs=34.7
Q ss_pred cCCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcC
Q 005785 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 318 (677)
Q Consensus 277 ~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG 318 (677)
..|+..|||||+...++|.+ .||.|+.||.+++ ..+...+|
T Consensus 156 ~~pL~Qlp~i~~~~~~~l~~-~~i~s~~~l~~~~~~e~~~ll~ 197 (328)
T 3im1_A 156 DNPLRQIPHFNNKILEKCKE-INVETVYDIMALEDEERDEILT 197 (328)
T ss_dssp SCGGGGSTTCCHHHHHHHHH-TTCCSHHHHHHSCHHHHHHHCC
T ss_pred CCceeCCCCCCHHHHHHHHh-CCCCCHHHHhcCCHHHHHhHhC
Confidence 36899999999999999986 8999999999986 66666544
No 32
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=63.87 E-value=2.3 Score=49.98 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=28.4
Q ss_pred CCCccccCCCHHHHHHHHhhcCCCcHHHHHhc
Q 005785 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQK 309 (677)
Q Consensus 278 LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~ 309 (677)
.||..|+|||+++++.|++ +||+|++||+..
T Consensus 115 ~~~~~l~gvg~~~~~~l~~-lgi~~~~dll~~ 145 (780)
T 1gm5_A 115 TDIQYAKGVGPNRKKKLKK-LGIETLRDLLEF 145 (780)
T ss_dssp CCSSSSSSCCHHHHHHHHT-TTCCSSGGGTSC
T ss_pred CCchhcCCCCHHHHHHHHH-CCCCcHHHHHhh
Confidence 4899999999999999997 999999999764
No 33
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=62.56 E-value=3.8 Score=43.28 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=25.5
Q ss_pred CccccCCCHHHHHHHHhhcCCCcHHHHHhc
Q 005785 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQK 309 (677)
Q Consensus 280 V~kLpGIG~~t~~~L~~~lGI~T~gDL~~~ 309 (677)
+.+|||||++++++|.+ -||+|+.||.+.
T Consensus 100 l~~V~GiGpk~a~~l~~-~Gi~tledL~~a 128 (335)
T 2fmp_A 100 LTRVSGIGPSAARKFVD-EGIKTLEDLRKN 128 (335)
T ss_dssp HTTSTTCCHHHHHHHHH-TTCCSHHHHHTC
T ss_pred HhCCCCCCHHHHHHHHH-cCCCCHHHHHHh
Confidence 45689999999999997 699999999863
No 34
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=61.50 E-value=5.1 Score=41.26 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=33.1
Q ss_pred CCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcC
Q 005785 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 318 (677)
Q Consensus 279 PV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG 318 (677)
+|.+|+||++.+..+|++ -||+|+.|++..+ ..|...-|
T Consensus 4 ~~~~l~gi~~~~~~kL~~-~gi~t~~~~~~~~~~~L~~~~g 43 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVE-AGYIDFMKIATATVGELTDIEG 43 (322)
T ss_dssp -CTTSTTCCHHHHHHHHH-HTCCSHHHHHTCCHHHHHTSTT
T ss_pred cHhhcCCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHHhhC
Confidence 678899999999999997 8999999999986 67776555
No 35
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=61.41 E-value=7.9 Score=32.58 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=36.3
Q ss_pred hcCCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcChh
Q 005785 276 SSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHS 320 (677)
Q Consensus 276 ~~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG~~ 320 (677)
..+.++..||+..-..+.|++ -||+|+.|++... ..|.+..|-.
T Consensus 2 ~~l~~~~~p~Lse~~~~~L~~-~~I~Tv~Dfl~~d~~eL~~~~~ls 46 (83)
T 2kz3_A 2 GVLRVGLCPGLTEEMIQLLRS-HRIKTVVDLVSADLEEVAQKCGLS 46 (83)
T ss_dssp CCCCTTSSTTCCHHHHHHHHH-TTCCCHHHHTTSCHHHHHHHHTCC
T ss_pred CccccccCCCCCHHHHHHHHH-CCCCCHHHHHhCCHHHHHHHhCCC
Confidence 455677779999999999997 8999999999986 6777776643
No 36
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=61.14 E-value=10 Score=39.73 Aligned_cols=40 Identities=8% Similarity=0.086 Sum_probs=34.3
Q ss_pred CCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcC
Q 005785 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 318 (677)
Q Consensus 278 LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG 318 (677)
.|+..|||||+...++|.+ .||.|+.||.+++ ..+...+|
T Consensus 161 ~pL~Qlp~i~~~~~~~l~~-~~i~s~~~l~~~~~~e~~~ll~ 201 (339)
T 2q0z_X 161 SYLKQLPHFTSEHIKRCTD-KGVESVFDIMEMEDEERNALLQ 201 (339)
T ss_dssp CGGGGSTTCCHHHHHHHHH-TTCCSHHHHHHSCHHHHHHHHC
T ss_pred CceecCCCCCHHHHHHHHh-cCCCCHHHHHhCCHHHHHHHHC
Confidence 6899999999999999986 8999999999986 55655554
No 37
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=60.74 E-value=4.7 Score=42.58 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.8
Q ss_pred ccccCCCHHHHHHHHhhcCCCcHHHHHhc
Q 005785 281 RKIGGIGKVTEHILRDVFGINTCEEMLQK 309 (677)
Q Consensus 281 ~kLpGIG~~t~~~L~~~lGI~T~gDL~~~ 309 (677)
..|||||++++++|.+ .||+|+.||...
T Consensus 99 ~~v~GiG~k~a~~l~~-~Gi~tledL~~a 126 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWYQ-QGFRSLEDIRSQ 126 (335)
T ss_dssp HTSTTCCHHHHHHHHH-TTCCSHHHHHHH
T ss_pred hcCCCcCHHHHHHHHH-cCCCCHHHHHHH
Confidence 4689999999999997 699999999763
No 38
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=60.54 E-value=4.8 Score=46.22 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=39.3
Q ss_pred CCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcChhHHHHHHH
Q 005785 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHSTADFFLS 327 (677)
Q Consensus 278 LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG~~~~~~L~~ 327 (677)
+|+..|||||+..+++|.+ .|++|+.||+ .+ ..|...+|+..+..+..
T Consensus 657 ~~L~qlp~i~~~rar~L~~-~g~~s~~~l~-~~~~~l~~~l~~~~~~~i~~ 705 (715)
T 2va8_A 657 LELVQISGVGRKRARLLYN-NGIKELGDVV-MNPDKVKNLLGQKLGEKVVQ 705 (715)
T ss_dssp HHHHTSTTCCHHHHHHHHH-TTCCSHHHHH-HCHHHHHHHHCHHHHHHHHH
T ss_pred cchhhCCCCCHHHHHHHHH-cCCCCHHHHh-CCHHHHHHHhChhHHHHHHH
Confidence 6888999999999999997 8999999999 75 77777777655554443
No 39
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=60.24 E-value=1.8 Score=43.68 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=0.0
Q ss_pred CCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHh--cChhHHHHH
Q 005785 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFF 325 (677)
Q Consensus 278 LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~r--FG~~~~~~L 325 (677)
..|..|||||++++..|.. .|+.++.+|.... ..|... ||....+.+
T Consensus 15 ~~L~~IpGIGpk~a~~Ll~-~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I 64 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLRE-AGFESVEDVRGADQSALADVSGIGNALAARI 64 (241)
T ss_dssp ---------------------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHHH-cCCCCHHHHHhCCHHHHHhccCCCHHHHHHH
Confidence 4678899999999999987 5999999997665 667665 676666555
No 40
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=57.85 E-value=6.6 Score=45.05 Aligned_cols=51 Identities=20% Similarity=0.332 Sum_probs=41.7
Q ss_pred CCCccccCCCHHHHHHHHhhcCCCcHHHHHhchHHHHHhcChhHHHHHHHhc
Q 005785 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVG 329 (677)
Q Consensus 278 LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~~~L~~rFG~~~~~~L~~~a 329 (677)
+|+..|||||+..+++|.+ .|++|+.||.+.+..|...+|+..+..+...+
T Consensus 632 ~~L~qlp~v~~~~ar~l~~-~g~~s~~~l~~~~~~l~~ll~~~~~~~i~~~~ 682 (702)
T 2p6r_A 632 LELVRIRHIGRVRARKLYN-AGIRNAEDIVRHREKVASLIGRGIAERVVEGI 682 (702)
T ss_dssp HHHHTSTTCCHHHHHHHHT-TTCCSHHHHHHTHHHHHHHHCHHHHHHHHHHH
T ss_pred HhhhcCCCCCHHHHHHHHH-cCCCCHHHHHhhhHHHHHHhChhHHHHHHHhc
Confidence 6788999999999999997 89999999998777677777766666555443
No 41
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=57.79 E-value=8.2 Score=44.42 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=41.2
Q ss_pred cCCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHh--cChhHHHHHHHh
Q 005785 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLSV 328 (677)
Q Consensus 277 ~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~r--FG~~~~~~L~~~ 328 (677)
.+|+..|||||+..+++|.+ .|++|+.||++.+ ..+... +|......+...
T Consensus 645 ~~~L~qlp~v~~~rar~L~~-~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~ 698 (720)
T 2zj8_A 645 LIPLMQLPLVGRRRARALYN-SGFRSIEDISQARPEELLKIEGIGVKTVEAIFKF 698 (720)
T ss_dssp GGGGTTSTTCCHHHHHHHHT-TTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred chhhhhCCCCCHHHHHHHHH-cCCCCHHHHHhCCHHHHHHhHhHHHHHHHHHHHh
Confidence 46899999999999999997 8999999999986 666655 777666555444
No 42
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=56.61 E-value=5 Score=42.78 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=24.8
Q ss_pred CccccCCCHHHHHHHHhhcCCCcHHHHHh
Q 005785 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQ 308 (677)
Q Consensus 280 V~kLpGIG~~t~~~L~~~lGI~T~gDL~~ 308 (677)
+.+|||||++++++|.+ -||+|+.||..
T Consensus 104 l~~I~GvG~kta~~l~~-~Gi~tledL~~ 131 (360)
T 2ihm_A 104 FTQVFGVGVKTANRWYQ-EGLRTLDELRE 131 (360)
T ss_dssp HHTSTTCCHHHHHHHHH-TTCCSHHHHHT
T ss_pred HhCCCCCCHHHHHHHHH-cCCCCHHHHHh
Confidence 45689999999999997 69999999974
No 43
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=55.19 E-value=6.5 Score=42.24 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=24.7
Q ss_pred CccccCCCHHHHHHHHhhcCCCcHHHHHh
Q 005785 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQ 308 (677)
Q Consensus 280 V~kLpGIG~~t~~~L~~~lGI~T~gDL~~ 308 (677)
+.+|||||++++++|.+ -||+|+.||.+
T Consensus 123 l~~I~GvGpk~a~~ly~-~Gi~tledL~~ 150 (381)
T 1jms_A 123 FTSVFGVGLKTAEKWFR-MGFRTLSKIQS 150 (381)
T ss_dssp HHTSTTCCHHHHHHHHH-TTCCSHHHHHH
T ss_pred HHccCCCCHHHHHHHHH-cCCCcHHHHHh
Confidence 45689999999999997 69999999974
No 44
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=54.99 E-value=9.8 Score=37.81 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=37.3
Q ss_pred CCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcCh-hHHHHHHH
Q 005785 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSH-STADFFLS 327 (677)
Q Consensus 278 LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG~-~~~~~L~~ 327 (677)
-++..|||||+++.+.|.+.+| ++..|.+.. .+|...+|+ ..+..++.
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~Fg--Sl~~i~~As~EeL~~VIG~~~~A~~I~~ 217 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHFG--SLENIRSASLEEIARVIGSTEIARRVLD 217 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHC--SHHHHHTSCHHHHHHHHTCHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHcC--CHHHHHhCCHHHHHHHhChHHHHHHHHH
Confidence 4678899999999999987666 788887775 677777888 77666543
No 45
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=56.02 E-value=3.3 Score=25.69 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=15.1
Q ss_pred cccccccCCCCCCChhhhhhccchhH
Q 005785 589 DYKCSLCGTEMPPSFIEERQEHSDFH 614 (677)
Q Consensus 589 ~y~c~~c~~~~~~~~~~~~~eh~d~h 614 (677)
.|+|++||..+... ..-..|-..|
T Consensus 2 ~~~C~~C~k~f~~~--~~l~~H~~~H 25 (29)
T 2lvt_A 2 PCQCVMCGKAFTQA--SSLIAHVRQH 25 (29)
Confidence 48999999988632 2233454444
No 46
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=55.72 E-value=3.4 Score=25.66 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=15.6
Q ss_pred cccccccCCCCCCChhhhhhccchhHH
Q 005785 589 DYKCSLCGTEMPPSFIEERQEHSDFHL 615 (677)
Q Consensus 589 ~y~c~~c~~~~~~~~~~~~~eh~d~h~ 615 (677)
-|+|+.||..+... ..-+.|...|.
T Consensus 3 ~~~C~~C~k~f~~~--~~l~~H~~~h~ 27 (30)
T 2lvr_A 3 PYVCIHCQRQFADP--GALQRHVRIHT 27 (30)
Confidence 48999999988732 22234544443
No 47
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=47.79 E-value=3.6 Score=25.13 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=11.4
Q ss_pred cccccccCCCCCCC
Q 005785 589 DYKCSLCGTEMPPS 602 (677)
Q Consensus 589 ~y~c~~c~~~~~~~ 602 (677)
-|+|..||..++..
T Consensus 2 ~~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 2 EHKCPHCDKKFNQV 15 (29)
T ss_dssp CCCCSSCCCCCCTT
T ss_pred CCcCCCCCcccCCH
Confidence 38999999988743
No 48
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=46.26 E-value=6.6 Score=23.65 Aligned_cols=12 Identities=42% Similarity=1.024 Sum_probs=10.6
Q ss_pred ccccccCCCCCC
Q 005785 590 YKCSLCGTEMPP 601 (677)
Q Consensus 590 y~c~~c~~~~~~ 601 (677)
|+|.+||..+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 899999998874
No 49
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=46.22 E-value=4.2 Score=42.16 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred CCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcC
Q 005785 278 LPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 318 (677)
Q Consensus 278 LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG 318 (677)
.||..||||++.+.++|++ .|++|+.+++..+ ..|.+.-|
T Consensus 12 ~~~~~l~g~~~~~~~~l~~-~g~~t~~~~~~~~~~~l~~~~g 52 (324)
T 2z43_A 12 KTINDLPGISQTVINKLIE-AGYSSLETLAVASPQDLSVAAG 52 (324)
T ss_dssp ------------------------------------------
T ss_pred ccHHHcCCCCHHHHHHHHH-cCCCcHHHHHcCCHHHHHHhhC
Confidence 3889999999999999997 8999999998875 55655444
No 50
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=44.77 E-value=14 Score=29.35 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=32.3
Q ss_pred CccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHh--cChhHHHHHHH
Q 005785 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLS 327 (677)
Q Consensus 280 V~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~r--FG~~~~~~L~~ 327 (677)
+..+||||++++..|-..+ .++.+|.... ..|... +|+.....+..
T Consensus 16 L~~i~giG~~~a~~Ll~~f--gs~~~l~~a~~~~L~~i~Gig~~~a~~i~~ 64 (75)
T 1x2i_A 16 VEGLPHVSATLARRLLKHF--GSVERVFTASVAELMKVEGIGEKIAKEIRR 64 (75)
T ss_dssp HTTSTTCCHHHHHHHHHHH--CSHHHHHHCCHHHHTTSTTCCHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHc--CCHHHHHhCCHHHHhcCCCCCHHHHHHHHH
Confidence 5678999999999887634 5677777765 566655 67666665543
No 51
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=44.59 E-value=9.7 Score=30.77 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=23.6
Q ss_pred CccccCCCHHHHHHHHhhcCCCcHHHHHhch
Q 005785 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG 310 (677)
Q Consensus 280 V~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~ 310 (677)
+..+||||+++++.+-+..+..++.||.+.+
T Consensus 29 L~~ipGIG~~~A~~Il~~r~~~s~~eL~~v~ 59 (75)
T 2duy_A 29 LMALPGIGPVLARRIVEGRPYARVEDLLKVK 59 (75)
T ss_dssp HTTSTTCCHHHHHHHHHTCCCSSGGGGGGST
T ss_pred HHhCCCCCHHHHHHHHHHcccCCHHHHHhCC
Confidence 4557999999998877656778888876653
No 52
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=40.18 E-value=4 Score=24.96 Aligned_cols=13 Identities=31% Similarity=0.838 Sum_probs=10.7
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|++||..+..
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 2m0f_A 2 PLKCRECGKQFTT 14 (29)
T ss_dssp CEECTTTSCEESC
T ss_pred CccCCCCCCccCC
Confidence 4899999988763
No 53
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.71 E-value=9.9 Score=24.70 Aligned_cols=13 Identities=23% Similarity=0.802 Sum_probs=11.2
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|++||..+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elr_A 9 THLCDMCGKKFKS 21 (36)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeecCcCCCCcCc
Confidence 5999999998873
No 54
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=45.72 E-value=6.2 Score=23.74 Aligned_cols=13 Identities=31% Similarity=0.848 Sum_probs=10.8
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
-|+|.+||..+..
T Consensus 2 p~~C~~C~k~f~~ 14 (26)
T 2lvu_A 2 PYVCERCGKRFVQ 14 (26)
Confidence 3899999998873
No 55
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=39.45 E-value=29 Score=40.01 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=35.7
Q ss_pred CCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHH--hcChhHHHHH
Q 005785 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCA--VFSHSTADFF 325 (677)
Q Consensus 279 PV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~--rFG~~~~~~L 325 (677)
..=+|+|+|+++.+.|-+..+|+++.||+.+. ..|.. .||++...-|
T Consensus 442 ~aldI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nL 491 (667)
T 1dgs_A 442 KAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNL 491 (667)
T ss_dssp TSSCCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHH
T ss_pred cccCcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHH
Confidence 33458999999999998756789999999986 55543 5887665544
No 56
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=38.18 E-value=10 Score=23.06 Aligned_cols=14 Identities=29% Similarity=0.721 Sum_probs=11.5
Q ss_pred cccccccCCCCCCC
Q 005785 589 DYKCSLCGTEMPPS 602 (677)
Q Consensus 589 ~y~c~~c~~~~~~~ 602 (677)
.|.|..||..+...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (30)
T 1klr_A 2 TYQCQYCEFRSADS 15 (30)
T ss_dssp CCCCSSSSCCCSCS
T ss_pred CccCCCCCCccCCH
Confidence 48999999998743
No 57
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=38.12 E-value=6.7 Score=23.82 Aligned_cols=13 Identities=31% Similarity=0.756 Sum_probs=10.9
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
-|+|+.||..+..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 3 PFSCSLCPQRSRD 15 (27)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCcChhhCC
Confidence 4899999998873
No 58
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=37.95 E-value=53 Score=30.97 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCC---ceEEeccCceEEecchhhhhcCCCHHHHHHHHHHHHHHH--------hCCeeEEEec
Q 005785 180 YYSDLTRKVFCKYDP---NFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEE--------AGLTCSAGVA 243 (677)
Q Consensus 180 ~~s~~i~~il~~y~p---~ve~~SiDEa~LDlT~~~~~~g~~~~~la~~IR~~I~~~--------tGlt~S~GIA 243 (677)
++...+.+++..+.+ .+-.++=||+.+=+.+.... ....++.+|++.|... ..+|+|+|||
T Consensus 58 ~vL~~va~~L~~~~~~~~~v~R~gGDEF~ill~~~~~~---~~~~~~~~i~~~i~~~~~~~~~~~~~vt~SiGia 129 (179)
T 3tvk_A 58 VVLRTLATYLASWTRDYETVYRYGGEEFIIIVKAANDE---EACRAGVRICQLVDNHAITHSEGHINITVTAGVS 129 (179)
T ss_dssp HHHHHHHHHHHHTSCTTSCEEECSSSEEEEEEEESSHH---HHHHHHHHHHHHHHHSCEEETTEEECCCEEEEEE
T ss_pred HHHHHHHHHhHhcCCcccEEEEccCCEEEEEcCCCCHH---HHHHHHHHHHHHHHcCCcccCCceEEEEEEEEEE
Confidence 345566666665542 46677889977655432111 3557888899888542 2589999998
No 59
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=37.46 E-value=11 Score=23.22 Aligned_cols=14 Identities=29% Similarity=0.840 Sum_probs=11.4
Q ss_pred cccccccCCCCCCC
Q 005785 589 DYKCSLCGTEMPPS 602 (677)
Q Consensus 589 ~y~c~~c~~~~~~~ 602 (677)
.|.|+.||..+...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (30)
T 1paa_A 2 AYACGLCNRAFTRR 15 (30)
T ss_dssp CSBCTTTCCBCSSS
T ss_pred CcCCcccCcccCCh
Confidence 48999999988743
No 60
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=36.86 E-value=11 Score=22.85 Aligned_cols=13 Identities=15% Similarity=0.733 Sum_probs=11.0
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|++||..+..
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 1ard_A 2 SFVCEVCTRAFAR 14 (29)
T ss_dssp CCBCTTTCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 4899999998873
No 61
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=36.26 E-value=25 Score=37.80 Aligned_cols=46 Identities=26% Similarity=0.233 Sum_probs=37.5
Q ss_pred hhhcCCCccccC--CCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcChh
Q 005785 274 FISSLPIRKIGG--IGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFSHS 320 (677)
Q Consensus 274 fL~~LPV~kLpG--IG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG~~ 320 (677)
.-...||.+|.+ |++.+.++|++ .|++|+.+|+..+ ..|.+..|..
T Consensus 77 ~~~~~~~~~l~~~gi~~~~~~~L~~-ag~~tv~~~~~~~~~~L~~~~gis 125 (400)
T 3lda_A 77 LGSFVPIEKLQVNGITMADVKKLRE-SGLHTAEAVAYAPRKDLLEIKGIS 125 (400)
T ss_dssp -CCSCBGGGGCCTTCCHHHHHHHHH-TTCCBHHHHHHSCHHHHHTSTTCC
T ss_pred ccCccCHHHHHhCCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHHHhCCC
Confidence 335678999986 77999999997 8999999998875 7888777643
No 62
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=35.69 E-value=22 Score=40.92 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=36.8
Q ss_pred CCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHH--hcChhHHHHHH
Q 005785 279 PIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCA--VFSHSTADFFL 326 (677)
Q Consensus 279 PV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~--rFG~~~~~~L~ 326 (677)
..=+|+|+|+++.+.|-+..+|+++.||+.+. ..|.. .||++...-|+
T Consensus 447 ~aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl 497 (671)
T 2owo_A 447 RAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVV 497 (671)
T ss_dssp TTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHH
T ss_pred hhcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHH
Confidence 34568999999999998755689999999986 55554 68887666553
No 63
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=35.65 E-value=7.7 Score=23.63 Aligned_cols=13 Identities=38% Similarity=1.050 Sum_probs=10.9
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|++||..+..
T Consensus 3 ~~~C~~C~k~f~~ 15 (28)
T 2kvf_A 3 PYSCSVCGKRFSL 15 (28)
T ss_dssp SEECSSSCCEESC
T ss_pred CccCCCCCcccCC
Confidence 4899999998773
No 64
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=33.29 E-value=8.7 Score=23.43 Aligned_cols=13 Identities=31% Similarity=1.025 Sum_probs=10.9
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|.|+.||..++.
T Consensus 3 ~~~C~~C~~~f~~ 15 (30)
T 2m0d_A 3 PYQCDYCGRSFSD 15 (30)
T ss_dssp CEECTTTCCEESC
T ss_pred CccCCCCCcccCC
Confidence 4899999998873
No 65
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.22 E-value=8 Score=23.64 Aligned_cols=12 Identities=42% Similarity=1.184 Sum_probs=10.4
Q ss_pred cccccccCCCCC
Q 005785 589 DYKCSLCGTEMP 600 (677)
Q Consensus 589 ~y~c~~c~~~~~ 600 (677)
-|+|.+||..+.
T Consensus 3 ~~~C~~C~k~f~ 14 (27)
T 2kvg_A 3 PYRCPLCRAGCP 14 (27)
T ss_dssp TEEETTTTEEES
T ss_pred CcCCCCCCcccC
Confidence 489999999876
No 66
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=30.72 E-value=2.1e+02 Score=24.41 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcCCceEEeccCc--eEEecchhhhhcCCCHHHHHH---HHHHHHHHHhCCee-EEEecCC
Q 005785 179 TYYSDLTRKVFCKYDPNFMAASLDE--AYLDITEVCRERGISGIEIAE---ELRTSVYEEAGLTC-SAGVAPN 245 (677)
Q Consensus 179 ~~~s~~i~~il~~y~p~ve~~SiDE--a~LDlT~~~~~~g~~~~~la~---~IR~~I~~~tGlt~-S~GIA~N 245 (677)
.+..+.+++++.--+..|.-.+++. .-..|... ..+++..++|+ .++..|..++|+.+ .+||+..
T Consensus 20 ~~l~~~la~ll~l~~~~Ft~i~V~g~aVTFrV~~N--~~n~taadVa~~a~~~k~~Le~~~G~~Iv~aGVG~r 90 (91)
T 2qt7_A 20 VKLLEILAEHVHMSSGSFINISVVGPALTFRIRHN--EQNLSLADVTQQAGLVKSELEAQTGLQILQTGVGQR 90 (91)
T ss_dssp HHHHHHHHHHHTSCGGGEEEEEEETTEEEEEECCC--TTCCCHHHHHHHHHHTHHHHHHHHTSCEEEEEEECC
T ss_pred HHHHHHHHHHhcCCccceeeeEeecceEEEEeccC--cccCCHHHHHHHHHHhHHHHHHhhCeEEEecccCCC
Confidence 3444555555543334444444443 22333322 23446666554 56999999999988 9999863
No 67
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=30.50 E-value=16 Score=23.60 Aligned_cols=13 Identities=15% Similarity=0.590 Sum_probs=11.0
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
-|.|++||..+.-
T Consensus 2 p~~C~~C~k~F~~ 14 (33)
T 1rim_A 2 KFACPECPKRFMR 14 (33)
T ss_dssp CCCCSSSCCCCSS
T ss_pred cccCCCCCchhCC
Confidence 3899999999874
No 68
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.05 E-value=11 Score=24.26 Aligned_cols=13 Identities=31% Similarity=0.805 Sum_probs=11.1
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|.+||..+..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 2elx_A 7 GYVCALCLKKFVS 19 (35)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCcchhCC
Confidence 4999999998873
No 69
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=29.86 E-value=11 Score=22.93 Aligned_cols=14 Identities=21% Similarity=0.600 Sum_probs=11.2
Q ss_pred cccccccCCCCCCC
Q 005785 589 DYKCSLCGTEMPPS 602 (677)
Q Consensus 589 ~y~c~~c~~~~~~~ 602 (677)
-|.|..||..+...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (29)
T 1rik_A 2 KFACPECPKRFMRS 15 (29)
T ss_dssp CEECSSSSCEESCS
T ss_pred CccCCCCCchhCCH
Confidence 38999999988743
No 70
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.43 E-value=12 Score=24.41 Aligned_cols=12 Identities=17% Similarity=0.672 Sum_probs=10.6
Q ss_pred cccccccCCCCC
Q 005785 589 DYKCSLCGTEMP 600 (677)
Q Consensus 589 ~y~c~~c~~~~~ 600 (677)
-|+|..||..+.
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2els_A 9 IFTCEYCNKVFK 20 (36)
T ss_dssp CEECTTTCCEES
T ss_pred CEECCCCCceeC
Confidence 489999999887
No 71
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=29.18 E-value=2e+02 Score=24.87 Aligned_cols=65 Identities=9% Similarity=0.180 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhcCCceEEeccCce--EEecchhhhhcCCCHHHHHH---HHHHHHHHHhCCee-EEEecC
Q 005785 178 YTYYSDLTRKVFCKYDPNFMAASLDEA--YLDITEVCRERGISGIEIAE---ELRTSVYEEAGLTC-SAGVAP 244 (677)
Q Consensus 178 Y~~~s~~i~~il~~y~p~ve~~SiDEa--~LDlT~~~~~~g~~~~~la~---~IR~~I~~~tGlt~-S~GIA~ 244 (677)
=.+..+.+++++.--+..|.-.|++.. -..|.... .++++.++|+ .++..|.++||+.+ ++|||.
T Consensus 26 G~~l~~~la~~l~l~~~~F~~isV~g~aVTFrV~~N~--~n~taadVA~~a~~~K~~Le~~tG~~I~~aGvG~ 96 (99)
T 4hti_A 26 GRRLVEDVARLLQVPSSAFADVEVLGPAVTFKVSANV--QNVTTEDVEKATVDNKDKLEETSGLKILQTGVGS 96 (99)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEETTEEEEEECCCT--TCCCHHHHHHHHHHTHHHHHHHHSSCEEEEEECC
T ss_pred HHHHHHHHHHHhCCchhheeeeeecCceEEEEeccCC--CCCCHHHHHHHHHHHHHHHHHhhCeEEEeccccC
Confidence 344555666666444444555555542 23333322 2456666654 56899999999977 999985
No 72
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=29.06 E-value=16 Score=23.87 Aligned_cols=13 Identities=15% Similarity=0.680 Sum_probs=11.0
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|..||..+..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4999999998873
No 73
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.84 E-value=12 Score=24.84 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=10.9
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
-|+|+.||..+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elm_A 9 LYYCSQCHYSSIT 21 (37)
T ss_dssp EEECSSSSCEEEC
T ss_pred CeECCCCCcccCC
Confidence 4999999998763
No 74
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=27.73 E-value=12 Score=24.16 Aligned_cols=12 Identities=17% Similarity=0.753 Sum_probs=10.6
Q ss_pred cccccccCCCCC
Q 005785 589 DYKCSLCGTEMP 600 (677)
Q Consensus 589 ~y~c~~c~~~~~ 600 (677)
.|+|++||..+.
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 1srk_A 7 PFVCRICLSAFT 18 (35)
T ss_dssp CEECSSSCCEES
T ss_pred CeeCCCCCcccC
Confidence 499999999886
No 75
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=27.71 E-value=29 Score=39.12 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=31.6
Q ss_pred CccccCCCHHHHHHHHhhcCCCcHHHHHhc--hHHHH--HhcChhHHHHH
Q 005785 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQK--GSLLC--AVFSHSTADFF 325 (677)
Q Consensus 280 V~kLpGIG~~t~~~L~~~lGI~T~gDL~~~--~~~L~--~rFG~~~~~~L 325 (677)
+.+|||||++++..|-. -||.|+.||.+. ...|. .-||+++.+.+
T Consensus 99 L~~v~GVGpk~A~~i~~-~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I 147 (578)
T 2w9m_A 99 LLGVRGLGPKKIRSLWL-AGIDSLERLREAAESGELAGLKGFGAKSAATI 147 (578)
T ss_dssp HTTSTTCCHHHHHHHHH-TTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHH
T ss_pred HhCCCCcCHHHHHHHHH-cCCCCHHHHHHHHhhCccccCCCCCHHHHHHH
Confidence 45689999999999886 599999999874 12222 23565555443
No 76
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.39 E-value=14 Score=24.14 Aligned_cols=13 Identities=23% Similarity=0.887 Sum_probs=11.1
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|..||..+.-
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elo_A 9 SYSCPVCEKSFSE 21 (37)
T ss_dssp CCEETTTTEECSS
T ss_pred CcCCCCCCCccCC
Confidence 4999999998873
No 77
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.20 E-value=13 Score=24.07 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=11.0
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|.+||..+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elt_A 9 PYKCPQCSYASAI 21 (36)
T ss_dssp SEECSSSSCEESS
T ss_pred CCCCCCCCcccCC
Confidence 5999999998873
No 78
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=26.20 E-value=14 Score=23.57 Aligned_cols=12 Identities=17% Similarity=0.686 Sum_probs=9.9
Q ss_pred cccccccCCCCC
Q 005785 589 DYKCSLCGTEMP 600 (677)
Q Consensus 589 ~y~c~~c~~~~~ 600 (677)
-|+|.+||..+.
T Consensus 2 p~~C~~C~k~f~ 13 (32)
T 2kfq_A 2 AFACPACPKRFM 13 (32)
T ss_dssp CSSSSSSCTTHH
T ss_pred CCCCCCCCcccC
Confidence 389999998765
No 79
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.05 E-value=14 Score=24.05 Aligned_cols=12 Identities=25% Similarity=0.863 Sum_probs=10.5
Q ss_pred cccccccCCCCC
Q 005785 589 DYKCSLCGTEMP 600 (677)
Q Consensus 589 ~y~c~~c~~~~~ 600 (677)
.|+|.+||..+.
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elv_A 9 LYDCHICERKFK 20 (36)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCCCCCccC
Confidence 499999999876
No 80
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.99 E-value=23 Score=24.66 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=11.2
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
-|+|++||..+.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2eom_A 12 GHRCSDCGKFFLQ 24 (46)
T ss_dssp SCCCSSSCCCCSS
T ss_pred CcCCCCCCCeeCC
Confidence 4999999999873
No 81
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=25.04 E-value=35 Score=43.69 Aligned_cols=41 Identities=7% Similarity=0.088 Sum_probs=34.5
Q ss_pred cCCCccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcC
Q 005785 277 SLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 318 (677)
Q Consensus 277 ~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG 318 (677)
.+|+..|||||+..+++|.+ .||+|+.||+++. ..+...++
T Consensus 1556 ~~~L~qip~i~~~~ar~l~~-~gi~t~~dl~~~~~~~~~~ll~ 1597 (1724)
T 4f92_B 1556 DSYLKQLPHFTSEHIKRCTD-KGVESVFDIMEMEDEERNALLQ 1597 (1724)
T ss_dssp SCGGGGSTTCCHHHHHHHHH-HTCCSHHHHHSSCHHHHTTSSC
T ss_pred CcCEecCCCCCHHHHHHHHH-CCCCCHHHHHhCCHHHHHHHHC
Confidence 36899999999999999997 8999999999885 55555544
No 82
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.99 E-value=22 Score=24.63 Aligned_cols=13 Identities=31% Similarity=0.864 Sum_probs=11.4
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|.+||..+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2emz_A 12 PFKCNECGKGFGR 24 (46)
T ss_dssp SCCCSSSCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 5999999999884
No 83
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=24.82 E-value=1.4e+02 Score=26.70 Aligned_cols=63 Identities=19% Similarity=0.062 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcCC---ceEEeccCceEEecchhhhhcCCCHHHHHHHHHHHHHH--------HhCCeeEEEecC
Q 005785 179 TYYSDLTRKVFCKYDP---NFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYE--------EAGLTCSAGVAP 244 (677)
Q Consensus 179 ~~~s~~i~~il~~y~p---~ve~~SiDEa~LDlT~~~~~~g~~~~~la~~IR~~I~~--------~tGlt~S~GIA~ 244 (677)
..+...+.+.+..+.+ .+-.++-||+.+=+.+... . ....++++|++.+.. ...+++|+||+.
T Consensus 63 d~~L~~ia~~L~~~~~~~~~~~R~~~d~F~ill~~~~~--~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~siGi~~ 136 (177)
T 3ign_A 63 DEVIRHTADVTRNNIRQSDSAGRYGGEEFGIILPETDA--E-SARVICERIREAIEKSTVSTSAGDIQYTVSMGIAQ 136 (177)
T ss_dssp HHHHHHHHHHHHTTSCTTSEEEECSSSEEEEEEETCCH--H-HHHHHHHHHHHHHHTCCEECSSCEECCCEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCeEEEEeCCCCH--H-HHHHHHHHHHHHHHhcCcccCCCceeEEEEEEEEe
Confidence 3455566666665532 3556777887665543211 1 356788899988854 135789999983
No 84
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=24.71 E-value=24 Score=34.82 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=14.4
Q ss_pred CccccCCCHHHHHHHH
Q 005785 280 IRKIGGIGKVTEHILR 295 (677)
Q Consensus 280 V~kLpGIG~~t~~~L~ 295 (677)
+++|||||++++++|.
T Consensus 28 l~~LPGIG~KsA~RlA 43 (212)
T 3vdp_A 28 LSKLPGIGPKTAQRLA 43 (212)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHH
Confidence 5779999999999996
No 85
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.41 E-value=16 Score=23.78 Aligned_cols=13 Identities=38% Similarity=0.846 Sum_probs=11.1
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|.+||..+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elq_A 9 PFKCSLCEYATRS 21 (36)
T ss_dssp SEECSSSSCEESC
T ss_pred CccCCCCCchhCC
Confidence 4999999998873
No 86
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=23.79 E-value=22 Score=27.50 Aligned_cols=10 Identities=60% Similarity=1.524 Sum_probs=5.6
Q ss_pred ccccccccCC
Q 005785 588 DDYKCSLCGT 597 (677)
Q Consensus 588 ~~y~c~~c~~ 597 (677)
++++|.+||.
T Consensus 35 ~dw~CP~Cg~ 44 (54)
T 4rxn_A 35 DDWVCPLCGV 44 (54)
T ss_dssp TTCBCTTTCC
T ss_pred CCCcCcCCCC
Confidence 4455666664
No 87
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.75 E-value=25 Score=23.63 Aligned_cols=13 Identities=23% Similarity=0.731 Sum_probs=11.2
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|++||..+..
T Consensus 10 ~~~C~~C~k~f~~ 22 (42)
T 2yte_A 10 PYSCAECKETFSD 22 (42)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeECCCCCCccCC
Confidence 4999999998873
No 88
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.46 E-value=17 Score=23.74 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=10.9
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|++||..+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elp_A 9 AMKCPYCDFYFMK 21 (37)
T ss_dssp CEECSSSSCEECS
T ss_pred CeECCCCChhhcc
Confidence 4999999998763
No 89
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.96 E-value=28 Score=23.83 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=11.3
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|.|.+||..+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2eou_A 12 TSECQECGKIFRH 24 (44)
T ss_dssp CCCCTTTCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 4899999999883
No 90
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=22.83 E-value=17 Score=24.19 Aligned_cols=12 Identities=42% Similarity=1.071 Sum_probs=10.6
Q ss_pred cccccccCCCCC
Q 005785 589 DYKCSLCGTEMP 600 (677)
Q Consensus 589 ~y~c~~c~~~~~ 600 (677)
.|+|++||..+.
T Consensus 6 ~~~C~~C~k~f~ 17 (39)
T 1njq_A 6 SYTCSFCKREFR 17 (39)
T ss_dssp SEECTTTCCEES
T ss_pred ceECCCCCcccC
Confidence 489999999887
No 91
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.81 E-value=24 Score=23.80 Aligned_cols=13 Identities=38% Similarity=1.066 Sum_probs=11.2
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|++||..+..
T Consensus 11 ~~~C~~C~k~f~~ 23 (42)
T 2eos_A 11 PYPCEICGTRFRH 23 (42)
T ss_dssp CBCCSSSCCCBSS
T ss_pred CEECCCCCCccCC
Confidence 5999999998873
No 92
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.57 E-value=29 Score=27.67 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=12.5
Q ss_pred CCCCcccccccccccccCCCCC
Q 005785 579 NQKDQFIWLDDYKCSLCGTEMP 600 (677)
Q Consensus 579 ~~~~~~~~~~~y~c~~c~~~~~ 600 (677)
+......|---|+|.-||.++.
T Consensus 11 ~~~~~~~~~v~Y~C~~Cg~~~~ 32 (63)
T 3h0g_L 11 AFNPPRPATMIYLCADCGARNT 32 (63)
T ss_dssp --------CCCCBCSSSCCBCC
T ss_pred ccCCCCCCCeEEECCCCCCeee
Confidence 3334445567799999999987
No 93
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=22.37 E-value=40 Score=37.95 Aligned_cols=30 Identities=23% Similarity=0.504 Sum_probs=24.1
Q ss_pred CccccCCCHHHHHHHHhhcCCCcHHHHHhc
Q 005785 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQK 309 (677)
Q Consensus 280 V~kLpGIG~~t~~~L~~~lGI~T~gDL~~~ 309 (677)
+-.+||||++++..+-..+|+.|+.||.+.
T Consensus 95 l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a 124 (575)
T 3b0x_A 95 VMEVPGVGPKTARLLYEGLGIDSLEKLKAA 124 (575)
T ss_dssp HHTSTTTCHHHHHHHHHTSCCCSHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHHhcCCCCHHHHHHH
Confidence 345899999999887544799999999764
No 94
>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}
Probab=22.26 E-value=96 Score=28.15 Aligned_cols=61 Identities=11% Similarity=-0.056 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcC--CceEEeccCceEEecchhhhhcCCCHHHHHHHHHHHHHH-------HhCCeeEEEecC
Q 005785 181 YSDLTRKVFCKYD--PNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYE-------EAGLTCSAGVAP 244 (677)
Q Consensus 181 ~s~~i~~il~~y~--p~ve~~SiDEa~LDlT~~~~~~g~~~~~la~~IR~~I~~-------~tGlt~S~GIA~ 244 (677)
+...+.+.|.... ..+-.++-||+.+=+.+.. .. ....++++|++.+.+ ...+++|+||+.
T Consensus 56 ~L~~ia~~L~~~~~~~~v~R~~~deF~ill~~~~--~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~siGi~~ 125 (176)
T 3hvw_A 56 LMLEARDRIRAELPDFTLYKISPTRFGLLLPRQQ--QE-ETESVCLRLLRAFESPVVCRGIPIKANVGLGVLP 125 (176)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEETTEEEEEEEGGG--GG-GHHHHHHHHHHHTTSCEEETTEEECCCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEecCCEEEEEeCCCC--HH-HHHHHHHHHHHHHhCCcccCCEEEEEEEEEEEEe
Confidence 3344444444332 3456678898776665421 11 577889999988743 235889999984
No 95
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=22.19 E-value=1.3e+02 Score=26.89 Aligned_cols=47 Identities=17% Similarity=-0.014 Sum_probs=30.8
Q ss_pred ceEEeccCceEEecchhhhhcCCCHHHHHHHHHHHHHH--------HhCCeeEEEecC
Q 005785 195 NFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYE--------EAGLTCSAGVAP 244 (677)
Q Consensus 195 ~ve~~SiDEa~LDlT~~~~~~g~~~~~la~~IR~~I~~--------~tGlt~S~GIA~ 244 (677)
.+..++-||+.+=+.+... . ....++++|+..+.+ ...+++|+||+.
T Consensus 87 ~~~R~~~d~F~ill~~~~~--~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~siGi~~ 141 (177)
T 3hva_A 87 DLARFGDSIFAALFKGKTP--E-QAQAALQRLLKKVENHLFELNGRSAQATLSIGVAG 141 (177)
T ss_dssp EEEECSSSEEEEEEETCCH--H-HHHHHHHHHHHHHHTCCEEETTEEECCCEEEEEEE
T ss_pred eEEEecCCeEEEEeCCCCH--H-HHHHHHHHHHHHHHhCccccCCceeeEEEEEEEEE
Confidence 3556778887665543211 1 356788889988854 125899999983
No 96
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.91 E-value=28 Score=24.01 Aligned_cols=13 Identities=38% Similarity=0.966 Sum_probs=11.3
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|.+||..+.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2yti_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp TTCCSSSCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 4999999999883
No 97
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=21.87 E-value=19 Score=37.56 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=0.0
Q ss_pred CCcccc--CCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHhcC
Q 005785 279 PIRKIG--GIGKVTEHILRDVFGINTCEEMLQKG-SLLCAVFS 318 (677)
Q Consensus 279 PV~kLp--GIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~rFG 318 (677)
||..|+ ||+..+..+|++ .|++|+.+++..+ ..|...-|
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~-~g~~t~~~~~~~~~~~l~~~~~ 67 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKS-VGICTIKGIQMTTRRALCNVKG 67 (343)
T ss_dssp -------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHH-cCCCcHHHHHhCCHHHHHHhhC
Confidence 888898 999999999997 8999999998875 56655444
No 98
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.79 E-value=28 Score=24.03 Aligned_cols=14 Identities=43% Similarity=1.087 Sum_probs=11.7
Q ss_pred ccccccccCCCCCC
Q 005785 588 DDYKCSLCGTEMPP 601 (677)
Q Consensus 588 ~~y~c~~c~~~~~~ 601 (677)
..|+|.+||..+.-
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2em6_A 11 KCYKCDVCGKEFSQ 24 (46)
T ss_dssp CCCBCSSSCCBCSS
T ss_pred CCeECCCCCcccCC
Confidence 34999999999883
No 99
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.63 E-value=28 Score=23.57 Aligned_cols=13 Identities=31% Similarity=0.879 Sum_probs=11.3
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|.|.+||..+.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2en7_A 12 PYVCNECGKAFRS 24 (44)
T ss_dssp SSCCTTTCCCCSS
T ss_pred CeECCCCCCccCC
Confidence 4999999999883
No 100
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.61 E-value=29 Score=23.93 Aligned_cols=13 Identities=38% Similarity=0.966 Sum_probs=11.2
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|++||..+.-
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2enf_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SCBCSSSCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 4999999999873
No 101
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.57 E-value=33 Score=23.65 Aligned_cols=13 Identities=23% Similarity=0.894 Sum_probs=11.2
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|.|++||..+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2yth_A 12 PFQCEECGKRFTQ 24 (46)
T ss_dssp SBCCSSSCCCBSS
T ss_pred CCCCCCCCcccCC
Confidence 4999999999873
No 102
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.27 E-value=29 Score=23.89 Aligned_cols=13 Identities=31% Similarity=0.979 Sum_probs=11.3
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|.+||..+.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eq2_A 12 PYQCNECGKAFSQ 24 (46)
T ss_dssp SSSCCSSCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 4999999999883
No 103
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.15 E-value=30 Score=23.87 Aligned_cols=13 Identities=31% Similarity=0.772 Sum_probs=11.3
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|.+||..+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2emg_A 12 PFICSECGKVFTH 24 (46)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CEECCccCcccCC
Confidence 5999999999883
No 104
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.12 E-value=27 Score=23.40 Aligned_cols=13 Identities=31% Similarity=1.030 Sum_probs=11.2
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|.|.+||..+..
T Consensus 11 ~~~C~~C~k~f~~ 23 (42)
T 2ytb_A 11 PYRCDQCGKAFSQ 23 (42)
T ss_dssp SBCCTTTTCCBSS
T ss_pred CeeCCCccchhCC
Confidence 4999999999873
No 105
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=21.00 E-value=31 Score=34.33 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=14.3
Q ss_pred CccccCCCHHHHHHHH
Q 005785 280 IRKIGGIGKVTEHILR 295 (677)
Q Consensus 280 V~kLpGIG~~t~~~L~ 295 (677)
+++|||||++++++|.
T Consensus 14 l~~LPGIG~KSA~RlA 29 (228)
T 1vdd_A 14 LSRLPGIGPKSAQRLA 29 (228)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HhHCCCCCHHHHHHHH
Confidence 5778999999999996
No 106
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.95 E-value=20 Score=24.64 Aligned_cols=12 Identities=33% Similarity=0.974 Sum_probs=10.7
Q ss_pred cccccccCCCCC
Q 005785 589 DYKCSLCGTEMP 600 (677)
Q Consensus 589 ~y~c~~c~~~~~ 600 (677)
-|+|++||..+.
T Consensus 12 ~~~C~~C~k~F~ 23 (44)
T 2epv_A 12 PYECNECGKAFI 23 (44)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCCcccC
Confidence 499999999887
No 107
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=20.90 E-value=55 Score=31.71 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=33.1
Q ss_pred CccccCCCHHHHHHHHhhcCCCcHHHHHhch-HHHHHh--cChhHHHHHHH
Q 005785 280 IRKIGGIGKVTEHILRDVFGINTCEEMLQKG-SLLCAV--FSHSTADFFLS 327 (677)
Q Consensus 280 V~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~-~~L~~r--FG~~~~~~L~~ 327 (677)
+..+||||++++..|.+.+| ++.+|.... ..|... +|+..+..++.
T Consensus 164 L~~i~gVg~~~a~~Ll~~fg--s~~~l~~a~~e~L~~v~GiG~~~a~~i~~ 212 (219)
T 2bgw_A 164 LQSFPGIGRRTAERILERFG--SLERFFTASKAEISKVEGIGEKRAEEIKK 212 (219)
T ss_dssp HHTSTTCCHHHHHHHHHHHS--SHHHHTTCCHHHHHHSTTCCHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHcC--CHHHHHhCCHHHHhhCCCCCHHHHHHHHH
Confidence 55799999999999876444 577787765 667666 67776666543
No 108
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.56 E-value=31 Score=23.69 Aligned_cols=13 Identities=38% Similarity=0.892 Sum_probs=11.2
Q ss_pred cccccccCCCCCC
Q 005785 589 DYKCSLCGTEMPP 601 (677)
Q Consensus 589 ~y~c~~c~~~~~~ 601 (677)
.|+|++||..+.-
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ep1_A 12 PYECSDCGKSFIK 24 (46)
T ss_dssp SSCCSSSCCCCSS
T ss_pred CcCCCCCCchhCC
Confidence 4999999999873
Done!