Query 005788
Match_columns 677
No_of_seqs 403 out of 2205
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 13:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10537 voltage-gated potassi 100.0 1.5E-30 3.3E-35 284.6 19.0 232 292-549 141-382 (393)
2 PF06241 DUF1012: Protein of u 100.0 4.9E-28 1.1E-32 231.2 16.1 202 461-671 1-202 (206)
3 COG0569 TrkA K+ transport syst 99.9 1.2E-23 2.7E-28 214.6 18.3 215 384-623 2-218 (225)
4 PRK09496 trkA potassium transp 99.9 4.7E-23 1E-27 229.3 21.9 243 383-663 1-252 (453)
5 KOG1420 Ca2+-activated K+ chan 99.9 1.7E-24 3.7E-29 234.6 6.2 327 279-617 241-620 (1103)
6 PRK09496 trkA potassium transp 99.9 1.1E-21 2.5E-26 218.3 21.7 215 381-623 230-446 (453)
7 KOG3193 K+ channel subunit [In 99.7 5.8E-18 1.2E-22 183.4 13.0 319 285-616 184-546 (1087)
8 PRK10669 putative cation:proto 99.7 6.8E-17 1.5E-21 185.4 19.8 141 381-545 416-556 (558)
9 PRK03659 glutathione-regulated 99.7 1.7E-15 3.8E-20 175.2 20.3 132 381-537 399-531 (601)
10 PF02254 TrkA_N: TrkA-N domain 99.7 7.2E-16 1.6E-20 140.3 12.8 112 385-518 1-112 (116)
11 PRK03562 glutathione-regulated 99.6 6.9E-15 1.5E-19 170.7 20.0 133 381-537 399-531 (621)
12 COG1226 Kch Kef-type K+ transp 99.0 1.7E-08 3.7E-13 98.2 15.3 143 378-544 17-160 (212)
13 PF07885 Ion_trans_2: Ion chan 98.9 9.3E-10 2E-14 94.2 4.5 71 296-366 4-78 (79)
14 KOG3713 Voltage-gated K+ chann 98.6 1.7E-08 3.7E-13 111.2 3.5 80 289-368 347-433 (477)
15 COG0490 Putative regulatory, l 98.4 6.5E-07 1.4E-11 86.1 7.5 99 522-623 52-155 (162)
16 PLN03192 Voltage-dependent pot 98.3 8.8E-07 1.9E-11 106.8 6.9 82 286-367 200-305 (823)
17 COG3400 Uncharacterized protei 98.3 1.5E-05 3.2E-10 84.8 14.3 212 383-622 2-216 (471)
18 KOG4404 Tandem pore domain K+ 98.2 4.6E-06 1E-10 87.8 7.9 84 284-367 157-249 (350)
19 PF02080 TrkA_C: TrkA-C domain 98.1 1.1E-06 2.4E-11 73.0 2.4 63 555-621 3-66 (71)
20 KOG1545 Voltage-gated shaker-l 98.1 1E-07 2.2E-12 100.9 -5.2 72 294-365 368-446 (507)
21 KOG1419 Voltage-gated K+ chann 98.1 7.5E-07 1.6E-11 99.0 1.2 57 312-368 268-325 (654)
22 PF01007 IRK: Inward rectifier 97.5 0.00013 2.9E-09 79.1 6.0 76 312-391 83-161 (336)
23 KOG4390 Voltage-gated A-type K 97.3 1.5E-05 3.3E-10 85.3 -3.5 77 291-367 328-411 (632)
24 KOG3684 Ca2+-activated K+ chan 97.2 0.0078 1.7E-07 66.6 14.9 167 194-366 164-341 (489)
25 KOG1420 Ca2+-activated K+ chan 97.2 0.0077 1.7E-07 67.8 15.0 231 381-616 732-1066(1103)
26 COG3273 Uncharacterized conser 97.1 0.00029 6.4E-09 69.2 2.8 66 555-623 122-188 (204)
27 KOG1418 Tandem pore domain K+ 97.0 0.00032 7E-09 76.7 2.6 63 311-373 113-176 (433)
28 PRK06719 precorrin-2 dehydroge 97.0 0.0036 7.8E-08 60.9 8.8 83 381-490 12-94 (157)
29 KOG0498 K+-channel ERG and rel 96.9 0.00037 8.1E-09 81.9 2.2 55 314-368 295-350 (727)
30 PF03493 BK_channel_a: Calcium 96.9 0.0027 5.9E-08 57.3 6.7 69 515-585 9-101 (101)
31 KOG4404 Tandem pore domain K+ 96.8 0.00054 1.2E-08 72.6 2.2 120 222-361 5-129 (350)
32 KOG1418 Tandem pore domain K+ 96.3 0.00038 8.3E-09 76.1 -3.2 66 293-358 222-296 (433)
33 KOG0501 K+-channel KCNQ [Inorg 96.1 0.0051 1.1E-07 69.4 4.1 55 314-368 424-479 (971)
34 KOG0499 Cyclic nucleotide-gate 95.9 0.0041 8.9E-08 70.4 2.3 96 273-368 348-458 (815)
35 KOG3193 K+ channel subunit [In 95.7 0.031 6.6E-07 62.8 8.1 112 438-552 762-905 (1087)
36 PRK06718 precorrin-2 dehydroge 95.7 0.045 9.7E-07 55.4 8.5 83 381-488 9-92 (202)
37 TIGR03802 Asp_Ala_antiprt aspa 95.6 0.013 2.9E-07 68.0 5.0 64 554-621 220-284 (562)
38 PRK05326 potassium/proton anti 95.5 0.013 2.8E-07 68.2 4.6 63 555-622 418-480 (562)
39 KOG0500 Cyclic nucleotide-gate 94.8 0.041 9E-07 61.6 5.5 86 283-368 125-238 (536)
40 PRK04972 putative transporter; 94.6 0.034 7.4E-07 64.6 4.5 65 554-622 304-368 (558)
41 TIGR03802 Asp_Ala_antiprt aspa 94.4 0.045 9.8E-07 63.7 4.9 65 554-622 304-373 (562)
42 PRK03818 putative transporter; 94.1 0.058 1.3E-06 62.7 5.0 63 554-621 207-270 (552)
43 TIGR01470 cysG_Nterm siroheme 94.1 0.39 8.4E-06 48.8 10.4 85 382-491 9-94 (205)
44 PRK03818 putative transporter; 94.1 0.053 1.1E-06 63.0 4.7 65 554-622 291-356 (552)
45 PF03435 Saccharop_dh: Sacchar 93.7 0.36 7.8E-06 53.2 10.1 76 385-470 1-77 (386)
46 PRK12475 thiamine/molybdopteri 93.0 1 2.2E-05 49.3 12.2 98 381-491 23-141 (338)
47 PF13460 NAD_binding_10: NADH( 92.9 0.99 2.1E-05 43.7 10.7 69 385-470 1-70 (183)
48 PRK04972 putative transporter; 92.6 0.14 3.1E-06 59.5 5.2 54 564-621 228-282 (558)
49 COG1748 LYS9 Saccharopine dehy 92.6 1.3 2.8E-05 49.4 12.2 77 383-470 2-78 (389)
50 PRK05562 precorrin-2 dehydroge 91.4 2.7 5.8E-05 43.4 12.2 86 382-491 25-110 (223)
51 COG3263 NhaP-type Na+/H+ and K 90.7 0.34 7.4E-06 54.0 5.1 58 559-621 420-477 (574)
52 COG0168 TrkG Trk-type K+ trans 90.3 1.5 3.1E-05 50.6 10.1 135 221-360 331-481 (499)
53 COG1648 CysG Siroheme synthase 90.3 1.6 3.4E-05 44.7 9.3 87 381-491 11-97 (210)
54 PF00670 AdoHcyase_NAD: S-aden 89.8 0.74 1.6E-05 45.2 6.1 92 381-506 22-113 (162)
55 PLN02819 lysine-ketoglutarate 89.7 1.9 4E-05 53.8 10.8 106 381-504 568-681 (1042)
56 CHL00194 ycf39 Ycf39; Provisio 89.4 2.5 5.5E-05 45.1 10.5 71 384-469 2-73 (317)
57 cd01075 NAD_bind_Leu_Phe_Val_D 89.3 1.8 3.8E-05 43.8 8.7 102 382-517 28-134 (200)
58 PF00520 Ion_trans: Ion transp 89.0 0.67 1.4E-05 44.6 5.2 50 312-361 144-200 (200)
59 PRK06914 short chain dehydroge 88.4 1.9 4.2E-05 44.7 8.5 83 382-470 3-91 (280)
60 KOG3827 Inward rectifier K+ ch 88.3 0.3 6.5E-06 53.5 2.4 76 312-391 111-189 (400)
61 PRK09186 flagellin modificatio 87.9 2 4.3E-05 43.7 8.1 81 382-468 4-91 (256)
62 PRK07688 thiamine/molybdopteri 87.7 6.2 0.00013 43.3 12.2 98 381-491 23-141 (339)
63 PF13241 NAD_binding_7: Putati 87.1 4.2 9.2E-05 36.4 8.8 80 381-491 6-85 (103)
64 cd05213 NAD_bind_Glutamyl_tRNA 86.9 3.5 7.5E-05 44.5 9.6 103 381-509 177-279 (311)
65 COG0300 DltE Short-chain dehyd 86.6 2.4 5.2E-05 44.9 7.9 82 381-469 5-93 (265)
66 PLN00141 Tic62-NAD(P)-related 86.3 2.6 5.6E-05 43.3 7.9 77 382-470 17-95 (251)
67 PRK07326 short chain dehydroge 86.0 3.3 7.2E-05 41.5 8.5 80 382-470 6-92 (237)
68 cd01078 NAD_bind_H4MPT_DH NADP 86.0 3.1 6.7E-05 41.3 8.1 79 382-470 28-107 (194)
69 PF01488 Shikimate_DH: Shikima 85.9 2.2 4.7E-05 40.2 6.6 75 381-470 11-85 (135)
70 PRK04148 hypothetical protein; 85.6 1.8 3.9E-05 41.2 5.8 71 382-470 17-87 (134)
71 PRK08251 short chain dehydroge 85.6 3.2 6.9E-05 42.1 8.2 82 382-469 2-90 (248)
72 PF05368 NmrA: NmrA-like famil 85.5 5.7 0.00012 40.1 10.0 72 385-470 1-74 (233)
73 PRK06522 2-dehydropantoate 2-r 85.3 7.3 0.00016 41.0 11.0 71 384-470 2-76 (304)
74 PRK06194 hypothetical protein; 85.0 3.7 8.1E-05 42.7 8.5 81 382-470 6-93 (287)
75 PF00106 adh_short: short chai 84.9 3.5 7.5E-05 39.0 7.6 81 383-470 1-90 (167)
76 PF00056 Ldh_1_N: lactate/mala 84.9 14 0.00031 35.1 11.7 76 383-470 1-79 (141)
77 PRK08265 short chain dehydroge 84.9 3.4 7.4E-05 42.6 8.1 77 382-469 6-89 (261)
78 cd05211 NAD_bind_Glu_Leu_Phe_V 84.3 4.5 9.8E-05 41.5 8.5 107 381-515 22-143 (217)
79 PRK09291 short chain dehydroge 84.2 5.4 0.00012 40.5 9.1 79 383-469 3-82 (257)
80 PRK07024 short chain dehydroge 84.0 3.8 8.2E-05 42.0 8.0 79 382-469 2-87 (257)
81 PRK07831 short chain dehydroge 84.0 3.9 8.5E-05 42.0 8.1 82 382-469 17-106 (262)
82 PRK06949 short chain dehydroge 84.0 5.1 0.00011 40.7 8.8 81 381-469 8-95 (258)
83 PLN02780 ketoreductase/ oxidor 84.0 8 0.00017 41.7 10.7 61 382-448 53-114 (320)
84 PRK12829 short chain dehydroge 83.9 4.5 9.7E-05 41.2 8.4 80 381-470 10-96 (264)
85 PRK05854 short chain dehydroge 83.9 4 8.6E-05 43.7 8.3 82 382-469 14-102 (313)
86 PRK08267 short chain dehydroge 83.7 4 8.6E-05 41.8 7.9 78 383-470 2-87 (260)
87 PRK06138 short chain dehydroge 83.5 4.4 9.6E-05 41.0 8.1 80 382-470 5-91 (252)
88 PRK06101 short chain dehydroge 83.5 3.6 7.8E-05 41.8 7.4 62 383-456 2-64 (240)
89 PRK07454 short chain dehydroge 83.4 4.5 9.7E-05 40.8 8.1 79 383-469 7-92 (241)
90 PF01408 GFO_IDH_MocA: Oxidore 83.3 9.5 0.00021 34.2 9.4 71 384-470 2-72 (120)
91 PLN03209 translocon at the inn 83.2 4.5 9.7E-05 47.4 8.8 83 381-470 79-169 (576)
92 PRK07231 fabG 3-ketoacyl-(acyl 83.1 4.6 9.9E-05 40.8 8.0 80 382-470 5-91 (251)
93 PRK07063 short chain dehydroge 83.0 4.8 0.0001 41.2 8.2 82 382-469 7-95 (260)
94 cd01065 NAD_bind_Shikimate_DH 83.0 4.3 9.4E-05 38.3 7.3 73 382-470 19-91 (155)
95 PRK07062 short chain dehydroge 83.0 4.8 0.0001 41.3 8.2 82 382-469 8-96 (265)
96 PRK06940 short chain dehydroge 82.5 4.4 9.5E-05 42.3 7.8 80 382-470 2-86 (275)
97 PF00899 ThiF: ThiF family; I 82.3 15 0.00034 34.1 10.7 35 382-421 2-36 (135)
98 PF03807 F420_oxidored: NADP o 82.1 13 0.00029 32.1 9.5 80 384-485 1-81 (96)
99 PRK07666 fabG 3-ketoacyl-(acyl 82.0 6.1 0.00013 39.8 8.4 80 382-469 7-93 (239)
100 PRK06482 short chain dehydroge 82.0 6.9 0.00015 40.5 9.0 78 382-470 2-86 (276)
101 TIGR00933 2a38 potassium uptak 81.9 3.6 7.8E-05 45.8 7.2 41 310-350 345-389 (390)
102 cd05291 HicDH_like L-2-hydroxy 81.7 3.5 7.5E-05 44.3 6.8 110 384-508 2-122 (306)
103 PRK10538 malonic semialdehyde 81.6 5.4 0.00012 40.6 8.0 75 384-469 2-83 (248)
104 PRK12939 short chain dehydroge 81.6 6.9 0.00015 39.4 8.7 81 382-470 7-94 (250)
105 PLN02896 cinnamyl-alcohol dehy 81.5 6.4 0.00014 42.6 8.9 80 381-470 9-89 (353)
106 TIGR02356 adenyl_thiF thiazole 81.5 17 0.00038 36.6 11.4 35 381-420 20-54 (202)
107 PRK05565 fabG 3-ketoacyl-(acyl 81.4 5.6 0.00012 39.9 7.9 81 382-470 5-93 (247)
108 PRK10637 cysG siroheme synthas 81.4 12 0.00027 42.5 11.4 85 381-490 11-96 (457)
109 TIGR03649 ergot_EASG ergot alk 81.3 5.5 0.00012 41.5 8.0 69 385-470 2-77 (285)
110 PRK05993 short chain dehydroge 81.2 4.5 9.6E-05 42.2 7.3 74 382-469 4-85 (277)
111 PRK07067 sorbitol dehydrogenas 81.1 5.9 0.00013 40.5 8.0 77 382-469 6-89 (257)
112 PRK06172 short chain dehydroge 81.0 6.1 0.00013 40.2 8.1 80 382-469 7-93 (253)
113 PRK07523 gluconate 5-dehydroge 80.9 6 0.00013 40.3 8.0 81 382-470 10-97 (255)
114 PRK06200 2,3-dihydroxy-2,3-dih 80.9 5.5 0.00012 40.9 7.7 77 382-469 6-89 (263)
115 PRK08643 acetoin reductase; Va 80.6 6.2 0.00013 40.2 8.0 80 382-469 2-88 (256)
116 PRK08017 oxidoreductase; Provi 80.5 4.9 0.00011 40.8 7.2 59 383-455 3-62 (256)
117 PRK12826 3-ketoacyl-(acyl-carr 80.5 7.3 0.00016 39.2 8.4 81 382-470 6-93 (251)
118 PLN02650 dihydroflavonol-4-red 80.5 5.8 0.00013 42.8 8.1 82 382-470 5-87 (351)
119 PRK11908 NAD-dependent epimera 80.3 5.2 0.00011 43.1 7.6 73 383-468 2-76 (347)
120 PRK06124 gluconate 5-dehydroge 80.2 6.8 0.00015 39.9 8.1 80 382-469 11-97 (256)
121 PRK09242 tropinone reductase; 80.2 6.8 0.00015 40.0 8.1 81 383-469 10-97 (257)
122 PRK07097 gluconate 5-dehydroge 80.1 6.7 0.00014 40.4 8.1 81 382-470 10-97 (265)
123 PLN02989 cinnamyl-alcohol dehy 79.8 6 0.00013 42.0 7.8 82 382-470 5-87 (325)
124 PRK12384 sorbitol-6-phosphate 79.7 7.1 0.00015 39.9 8.1 82 383-470 3-91 (259)
125 PRK06500 short chain dehydroge 79.6 7.6 0.00017 39.1 8.2 77 382-469 6-89 (249)
126 PRK08309 short chain dehydroge 79.5 7.6 0.00017 38.5 7.9 65 383-456 1-65 (177)
127 TIGR02853 spore_dpaA dipicolin 79.5 23 0.00051 37.8 12.1 123 382-536 151-281 (287)
128 PRK06182 short chain dehydroge 79.5 5.6 0.00012 41.2 7.3 75 382-470 3-84 (273)
129 PRK08339 short chain dehydroge 79.3 7.4 0.00016 40.3 8.1 80 383-469 9-94 (263)
130 PRK05866 short chain dehydroge 79.3 6.9 0.00015 41.4 8.0 81 382-470 40-127 (293)
131 PLN02662 cinnamyl-alcohol dehy 79.3 5.5 0.00012 42.1 7.3 81 383-470 5-86 (322)
132 PRK06197 short chain dehydroge 79.2 6.4 0.00014 41.6 7.8 82 382-469 16-104 (306)
133 PRK12429 3-hydroxybutyrate deh 79.2 7.5 0.00016 39.3 8.0 80 383-470 5-91 (258)
134 PLN02427 UDP-apiose/xylose syn 79.0 6.3 0.00014 43.3 7.9 81 382-469 14-95 (386)
135 PRK08340 glucose-1-dehydrogena 79.0 6.9 0.00015 40.1 7.7 77 384-469 2-85 (259)
136 PRK05875 short chain dehydroge 78.4 9 0.0002 39.5 8.5 82 382-469 7-95 (276)
137 TIGR03589 PseB UDP-N-acetylglu 78.3 10 0.00022 40.7 9.1 79 383-470 5-84 (324)
138 PRK06924 short chain dehydroge 78.3 6.8 0.00015 39.7 7.4 63 383-456 2-66 (251)
139 PRK08213 gluconate 5-dehydroge 78.2 8.4 0.00018 39.3 8.1 81 382-470 12-99 (259)
140 COG2985 Predicted permease [Ge 78.2 1.9 4.1E-05 48.9 3.4 58 561-622 211-269 (544)
141 PRK07102 short chain dehydroge 78.1 8 0.00017 39.1 7.8 80 383-469 2-85 (243)
142 PF07991 IlvN: Acetohydroxy ac 77.9 3.5 7.7E-05 40.6 4.8 66 381-469 3-69 (165)
143 PRK07774 short chain dehydroge 77.9 8.7 0.00019 38.8 8.0 80 382-469 6-92 (250)
144 PRK07074 short chain dehydroge 77.8 9.9 0.00021 38.7 8.4 78 383-470 3-87 (257)
145 PRK13394 3-hydroxybutyrate deh 77.7 8.1 0.00018 39.3 7.8 81 382-470 7-94 (262)
146 cd01485 E1-1_like Ubiquitin ac 77.7 12 0.00027 37.6 8.9 36 381-421 18-53 (198)
147 PRK05650 short chain dehydroge 77.6 8.5 0.00018 39.7 8.0 79 384-470 2-87 (270)
148 PRK07890 short chain dehydroge 77.5 8.7 0.00019 39.0 7.9 80 382-469 5-91 (258)
149 PLN02214 cinnamoyl-CoA reducta 77.5 21 0.00045 38.7 11.2 80 382-470 10-91 (342)
150 cd01483 E1_enzyme_family Super 77.4 29 0.00064 32.5 10.9 33 384-421 1-33 (143)
151 TIGR00518 alaDH alanine dehydr 77.2 7.8 0.00017 43.0 7.9 72 382-468 167-238 (370)
152 PRK05867 short chain dehydroge 77.1 9.7 0.00021 38.8 8.2 80 382-469 9-95 (253)
153 PRK07109 short chain dehydroge 77.1 8.8 0.00019 41.5 8.2 80 382-469 8-94 (334)
154 PRK06181 short chain dehydroge 77.0 9.1 0.0002 39.2 7.9 79 383-469 2-87 (263)
155 PRK00536 speE spermidine synth 76.9 23 0.0005 37.5 10.9 102 380-506 71-175 (262)
156 PRK07576 short chain dehydroge 76.9 8.8 0.00019 39.6 7.8 80 381-468 8-94 (264)
157 PRK06139 short chain dehydroge 76.8 8.9 0.00019 41.6 8.1 80 382-469 7-93 (330)
158 PRK05653 fabG 3-ketoacyl-(acyl 76.7 9.9 0.00021 37.9 8.0 80 383-470 6-92 (246)
159 TIGR00934 2a38euk potassium up 76.4 6.4 0.00014 47.5 7.3 59 291-350 587-659 (800)
160 PRK09072 short chain dehydroge 76.3 10 0.00022 38.9 8.1 80 382-470 5-90 (263)
161 PRK08264 short chain dehydroge 76.3 8.1 0.00018 38.8 7.2 74 382-470 6-83 (238)
162 PRK06196 oxidoreductase; Provi 76.1 9.4 0.0002 40.6 8.0 75 383-469 27-108 (315)
163 PRK05876 short chain dehydroge 76.0 10 0.00022 39.6 8.1 80 382-469 6-92 (275)
164 PRK08219 short chain dehydroge 76.0 9.7 0.00021 37.7 7.6 75 383-470 4-81 (227)
165 PF01210 NAD_Gly3P_dh_N: NAD-d 75.9 4 8.6E-05 39.4 4.6 79 384-470 1-79 (157)
166 PRK07417 arogenate dehydrogena 75.9 15 0.00033 38.8 9.4 65 384-469 2-66 (279)
167 PRK07424 bifunctional sterol d 75.9 24 0.00052 39.7 11.4 76 382-469 178-254 (406)
168 KOG1014 17 beta-hydroxysteroid 75.9 18 0.00038 39.2 9.7 44 381-430 48-92 (312)
169 TIGR03466 HpnA hopanoid-associ 75.8 5 0.00011 42.2 5.8 71 384-469 2-73 (328)
170 TIGR01500 sepiapter_red sepiap 75.6 10 0.00022 38.8 7.9 71 384-456 2-73 (256)
171 PRK05884 short chain dehydroge 75.6 7.4 0.00016 39.3 6.7 72 384-468 2-77 (223)
172 PRK09135 pteridine reductase; 75.6 12 0.00027 37.4 8.4 81 382-469 6-94 (249)
173 TIGR02415 23BDH acetoin reduct 75.4 11 0.00024 38.2 8.0 78 384-469 2-86 (254)
174 TIGR03325 BphB_TodD cis-2,3-di 75.4 10 0.00023 38.8 7.9 77 382-469 5-88 (262)
175 PF02558 ApbA: Ketopantoate re 75.2 21 0.00046 33.5 9.3 74 385-470 1-77 (151)
176 PRK00811 spermidine synthase; 75.2 30 0.00066 36.8 11.5 81 381-470 76-160 (283)
177 PF12847 Methyltransf_18: Meth 75.1 51 0.0011 28.9 11.3 77 382-468 2-78 (112)
178 PRK06179 short chain dehydroge 75.0 5.9 0.00013 40.8 5.9 73 382-470 4-83 (270)
179 PRK05717 oxidoreductase; Valid 74.8 13 0.00028 37.9 8.4 78 382-470 10-94 (255)
180 PRK08217 fabG 3-ketoacyl-(acyl 74.7 12 0.00026 37.7 8.0 80 382-469 5-91 (253)
181 PRK07478 short chain dehydroge 74.5 12 0.00026 38.0 8.1 79 383-469 7-92 (254)
182 PLN02366 spermidine synthase 74.4 31 0.00068 37.3 11.4 82 381-470 91-175 (308)
183 PRK08085 gluconate 5-dehydroge 74.3 12 0.00027 38.0 8.1 80 382-469 9-95 (254)
184 TIGR03206 benzo_BadH 2-hydroxy 74.3 13 0.00028 37.5 8.1 80 382-469 3-89 (250)
185 PRK06180 short chain dehydroge 74.3 11 0.00024 39.2 7.8 77 383-470 5-88 (277)
186 PRK12936 3-ketoacyl-(acyl-carr 74.2 19 0.0004 36.1 9.2 78 382-470 6-90 (245)
187 PRK07453 protochlorophyllide o 74.1 14 0.0003 39.5 8.7 80 382-469 6-92 (322)
188 PRK12828 short chain dehydroge 74.0 11 0.00024 37.5 7.5 77 383-469 8-91 (239)
189 PRK07825 short chain dehydroge 73.9 11 0.00023 39.0 7.6 75 383-469 6-87 (273)
190 PRK07904 short chain dehydroge 73.8 12 0.00025 38.6 7.7 81 382-468 8-95 (253)
191 PRK07814 short chain dehydroge 73.7 13 0.00029 38.2 8.2 80 382-469 10-96 (263)
192 PLN02253 xanthoxin dehydrogena 73.6 13 0.00028 38.5 8.2 79 382-469 18-103 (280)
193 TIGR03438 probable methyltrans 73.2 43 0.00094 35.9 12.2 116 388-514 72-189 (301)
194 KOG1201 Hydroxysteroid 17-beta 73.0 33 0.00071 37.0 10.9 66 381-455 37-103 (300)
195 PF00070 Pyr_redox: Pyridine n 73.0 4.4 9.5E-05 34.2 3.7 32 384-421 1-32 (80)
196 PRK07060 short chain dehydroge 72.8 11 0.00023 38.0 7.1 76 382-470 9-87 (245)
197 PRK08589 short chain dehydroge 72.8 14 0.00029 38.4 8.0 79 382-469 6-91 (272)
198 TIGR01181 dTDP_gluc_dehyt dTDP 72.6 9.6 0.00021 39.7 6.9 78 384-470 1-83 (317)
199 PLN02657 3,8-divinyl protochlo 72.4 7.2 0.00016 43.3 6.2 79 382-468 60-144 (390)
200 PRK00066 ldh L-lactate dehydro 72.1 44 0.00095 36.2 11.9 112 381-508 5-127 (315)
201 PRK06483 dihydromonapterin red 71.6 11 0.00024 37.9 6.8 61 382-455 2-63 (236)
202 PRK04457 spermidine synthase; 71.4 57 0.0012 34.3 12.3 79 382-469 67-145 (262)
203 TIGR01963 PHB_DH 3-hydroxybuty 71.1 15 0.00032 37.1 7.7 79 383-469 2-87 (255)
204 PRK08125 bifunctional UDP-gluc 70.8 8.7 0.00019 45.7 6.8 78 380-469 313-391 (660)
205 PRK08277 D-mannonate oxidoredu 70.7 16 0.00035 37.8 8.0 80 382-469 10-96 (278)
206 PRK07035 short chain dehydroge 70.6 17 0.00038 36.8 8.1 79 382-468 8-93 (252)
207 PRK06057 short chain dehydroge 70.5 11 0.00024 38.4 6.7 75 382-469 7-88 (255)
208 cd01076 NAD_bind_1_Glu_DH NAD( 70.4 20 0.00043 37.1 8.5 42 381-428 30-82 (227)
209 PRK01581 speE spermidine synth 70.4 65 0.0014 35.9 12.8 81 381-470 150-236 (374)
210 PRK07775 short chain dehydroge 70.4 17 0.00036 37.8 8.1 81 382-470 10-97 (274)
211 PRK07677 short chain dehydroge 70.2 18 0.00039 36.8 8.1 79 383-469 2-87 (252)
212 PRK05693 short chain dehydroge 70.2 14 0.0003 38.2 7.4 74 383-470 2-82 (274)
213 PLN02986 cinnamyl-alcohol dehy 70.2 16 0.00035 38.7 8.1 79 382-470 5-87 (322)
214 PF03446 NAD_binding_2: NAD bi 70.1 51 0.0011 31.8 10.8 65 383-469 2-66 (163)
215 PLN02583 cinnamoyl-CoA reducta 70.0 20 0.00043 37.9 8.7 78 382-468 6-86 (297)
216 PRK05872 short chain dehydroge 70.0 17 0.00038 38.3 8.2 79 382-469 9-94 (296)
217 TIGR03025 EPS_sugtrans exopoly 69.8 2E+02 0.0043 32.5 17.7 74 382-470 125-198 (445)
218 PRK06079 enoyl-(acyl carrier p 69.5 16 0.00035 37.4 7.7 63 382-455 7-72 (252)
219 TIGR00872 gnd_rel 6-phosphoglu 69.4 45 0.00098 35.6 11.2 68 384-470 2-69 (298)
220 cd05290 LDH_3 A subgroup of L- 69.3 39 0.00085 36.5 10.8 110 384-508 1-124 (307)
221 PRK06953 short chain dehydroge 69.2 26 0.00056 34.9 8.9 73 384-470 3-80 (222)
222 PRK05476 S-adenosyl-L-homocyst 69.0 19 0.00041 40.8 8.5 39 381-425 211-249 (425)
223 PRK12921 2-dehydropantoate 2-r 68.8 43 0.00093 35.3 10.9 37 384-427 2-38 (305)
224 PRK08263 short chain dehydroge 68.6 18 0.00039 37.4 7.9 77 383-470 4-87 (275)
225 PRK08862 short chain dehydroge 68.6 19 0.00042 36.5 7.9 79 382-468 5-91 (227)
226 PRK08177 short chain dehydroge 68.3 15 0.00032 36.8 6.9 74 383-469 2-80 (225)
227 PRK08762 molybdopterin biosynt 68.3 54 0.0012 36.3 11.9 35 381-420 134-168 (376)
228 PRK15181 Vi polysaccharide bio 68.2 16 0.00034 39.6 7.6 82 382-470 15-100 (348)
229 TIGR01289 LPOR light-dependent 68.2 20 0.00043 38.3 8.3 81 382-469 3-90 (314)
230 PRK08416 7-alpha-hydroxysteroi 68.2 21 0.00046 36.6 8.2 80 382-468 8-95 (260)
231 PRK12548 shikimate 5-dehydroge 68.1 20 0.00044 38.2 8.2 81 382-470 126-209 (289)
232 PRK06125 short chain dehydroge 68.0 21 0.00045 36.5 8.1 81 382-469 7-90 (259)
233 PLN03223 Polycystin cation cha 67.9 27 0.00058 44.5 9.9 57 312-368 1360-1425(1634)
234 PRK14106 murD UDP-N-acetylmura 67.8 14 0.0003 41.5 7.3 72 382-469 5-77 (450)
235 KOG1054 Glutamate-gated AMPA-t 67.6 7.9 0.00017 44.9 5.1 54 312-365 594-647 (897)
236 PRK13302 putative L-aspartate 67.5 43 0.00093 35.4 10.5 71 383-470 7-77 (271)
237 PF02386 TrkH: Cation transpor 67.5 5.9 0.00013 43.4 4.1 68 283-350 263-338 (354)
238 KOG1208 Dehydrogenases with di 67.5 20 0.00044 38.9 8.1 70 380-455 32-103 (314)
239 COG1179 Dinucleotide-utilizing 67.3 20 0.00043 37.7 7.5 117 380-538 28-145 (263)
240 PRK08063 enoyl-(acyl carrier p 67.3 22 0.00047 35.9 8.0 80 383-470 5-92 (250)
241 PRK10750 potassium transporter 67.0 52 0.0011 37.9 11.7 74 285-359 394-475 (483)
242 cd01487 E1_ThiF_like E1_ThiF_l 66.8 60 0.0013 31.9 10.7 33 384-421 1-33 (174)
243 PRK06113 7-alpha-hydroxysteroi 66.6 23 0.0005 36.1 8.1 80 382-469 11-97 (255)
244 PRK06947 glucose-1-dehydrogena 66.3 25 0.00055 35.4 8.2 80 382-469 2-89 (248)
245 PRK05786 fabG 3-ketoacyl-(acyl 66.3 24 0.00051 35.3 7.9 79 382-469 5-90 (238)
246 TIGR01832 kduD 2-deoxy-D-gluco 66.3 23 0.0005 35.7 8.0 78 382-470 5-90 (248)
247 PRK12490 6-phosphogluconate de 66.2 57 0.0012 34.8 11.2 67 384-470 2-69 (299)
248 PRK12935 acetoacetyl-CoA reduc 66.0 29 0.00063 35.0 8.6 81 382-470 6-94 (247)
249 PRK07832 short chain dehydroge 65.9 22 0.00047 36.8 7.8 79 384-469 2-87 (272)
250 PRK12746 short chain dehydroge 65.9 32 0.00069 34.8 8.9 81 382-470 6-100 (254)
251 PRK14620 NAD(P)H-dependent gly 65.7 24 0.00053 37.9 8.4 40 384-429 2-41 (326)
252 PRK00094 gpsA NAD(P)H-dependen 65.6 26 0.00056 37.3 8.5 40 384-429 3-42 (325)
253 PRK05597 molybdopterin biosynt 65.5 68 0.0015 35.4 11.9 83 381-470 27-128 (355)
254 PRK05599 hypothetical protein; 65.5 23 0.0005 36.2 7.8 64 384-455 2-66 (246)
255 cd00757 ThiF_MoeB_HesA_family 65.5 73 0.0016 32.6 11.5 36 381-421 20-55 (228)
256 PRK08628 short chain dehydroge 64.7 22 0.00048 36.1 7.5 79 382-469 7-92 (258)
257 PLN02688 pyrroline-5-carboxyla 64.6 64 0.0014 33.4 11.0 68 384-469 2-70 (266)
258 PLN02494 adenosylhomocysteinas 64.5 21 0.00045 41.0 7.7 39 381-425 253-291 (477)
259 PRK06198 short chain dehydroge 64.4 24 0.00052 35.9 7.7 80 382-469 6-93 (260)
260 PRK08594 enoyl-(acyl carrier p 64.1 24 0.00052 36.4 7.7 64 382-455 7-76 (257)
261 PRK12320 hypothetical protein; 63.8 34 0.00073 41.3 9.6 68 384-470 2-70 (699)
262 PF02737 3HCDH_N: 3-hydroxyacy 63.4 15 0.00032 36.5 5.7 41 384-430 1-41 (180)
263 PRK07069 short chain dehydroge 63.4 27 0.00059 35.1 7.8 80 385-470 2-89 (251)
264 PRK05557 fabG 3-ketoacyl-(acyl 63.1 36 0.00078 33.9 8.6 81 382-470 5-93 (248)
265 TIGR00936 ahcY adenosylhomocys 63.0 22 0.00047 40.1 7.5 39 381-425 194-232 (406)
266 PRK07806 short chain dehydroge 63.0 28 0.00061 35.1 7.8 79 383-469 7-93 (248)
267 PRK06484 short chain dehydroge 63.0 23 0.0005 40.4 8.0 78 381-469 268-352 (520)
268 COG1086 Predicted nucleoside-d 63.0 54 0.0012 38.4 10.7 83 382-469 250-334 (588)
269 PRK08226 short chain dehydroge 62.9 30 0.00065 35.3 8.1 79 382-469 6-91 (263)
270 PLN02686 cinnamoyl-CoA reducta 62.9 24 0.00052 38.7 7.8 80 381-468 52-136 (367)
271 TIGR02622 CDP_4_6_dhtase CDP-g 62.8 22 0.00047 38.4 7.3 78 383-469 5-84 (349)
272 PF00060 Lig_chan: Ligand-gate 62.7 2.1 4.6E-05 39.9 -0.4 55 314-368 45-99 (148)
273 KOG1210 Predicted 3-ketosphing 62.5 37 0.00081 37.0 8.7 84 381-470 32-122 (331)
274 PRK12827 short chain dehydroge 62.4 28 0.00061 34.8 7.7 81 382-470 6-97 (249)
275 PRK15116 sulfur acceptor prote 62.2 97 0.0021 33.0 11.8 36 381-421 29-64 (268)
276 PRK07041 short chain dehydroge 62.2 23 0.00049 35.3 6.9 76 386-470 1-79 (230)
277 PRK07680 late competence prote 62.0 2.1E+02 0.0045 30.0 15.2 104 384-513 2-106 (273)
278 PLN00198 anthocyanidin reducta 62.0 28 0.0006 37.3 8.0 79 382-470 9-90 (338)
279 PTZ00075 Adenosylhomocysteinas 62.0 19 0.0004 41.4 6.8 38 381-424 253-290 (476)
280 TIGR01915 npdG NADPH-dependent 61.9 79 0.0017 32.0 10.8 40 384-429 2-42 (219)
281 PRK07201 short chain dehydroge 61.5 25 0.00054 41.3 8.1 80 382-469 371-457 (657)
282 PRK01438 murD UDP-N-acetylmura 61.1 26 0.00056 39.9 7.9 71 382-469 16-87 (480)
283 cd05293 LDH_1 A subgroup of L- 61.0 78 0.0017 34.3 11.1 112 382-508 3-125 (312)
284 cd01484 E1-2_like Ubiquitin ac 61.0 28 0.00061 36.2 7.4 82 384-470 1-101 (234)
285 PRK12439 NAD(P)H-dependent gly 60.9 1.2E+02 0.0027 33.0 12.8 80 381-469 6-86 (341)
286 PRK10675 UDP-galactose-4-epime 60.8 24 0.00053 37.5 7.3 80 384-470 2-83 (338)
287 COG0373 HemA Glutamyl-tRNA red 60.6 23 0.0005 39.9 7.1 72 381-470 177-248 (414)
288 PRK06935 2-deoxy-D-gluconate 3 60.5 32 0.00068 35.1 7.8 79 382-469 15-100 (258)
289 TIGR01505 tartro_sem_red 2-hyd 60.4 37 0.0008 35.9 8.4 65 384-470 1-65 (291)
290 PLN02602 lactate dehydrogenase 60.2 68 0.0015 35.4 10.6 111 383-508 38-159 (350)
291 PRK12937 short chain dehydroge 60.1 42 0.00091 33.6 8.5 80 382-469 5-92 (245)
292 PRK00045 hemA glutamyl-tRNA re 60.1 21 0.00044 40.3 6.7 72 381-470 181-252 (423)
293 PRK08642 fabG 3-ketoacyl-(acyl 59.9 36 0.00078 34.3 8.0 63 383-456 6-70 (253)
294 PRK07023 short chain dehydroge 59.6 24 0.00051 35.7 6.6 59 384-455 3-62 (243)
295 PRK12481 2-deoxy-D-gluconate 3 59.5 37 0.00081 34.7 8.1 75 383-468 9-91 (251)
296 PRK05855 short chain dehydroge 59.2 30 0.00065 39.5 8.1 82 381-470 314-402 (582)
297 PF00070 Pyr_redox: Pyridine n 59.1 13 0.00028 31.3 3.9 28 644-674 1-28 (80)
298 PRK08644 thiamine biosynthesis 59.1 49 0.0011 33.7 8.7 35 381-420 27-61 (212)
299 PRK12549 shikimate 5-dehydroge 59.0 33 0.00072 36.6 7.8 76 382-470 127-202 (284)
300 TIGR01763 MalateDH_bact malate 58.7 92 0.002 33.6 11.2 111 383-508 2-123 (305)
301 PRK13940 glutamyl-tRNA reducta 58.6 25 0.00053 39.8 7.0 72 382-470 181-252 (414)
302 PRK12745 3-ketoacyl-(acyl-carr 58.5 39 0.00085 34.2 8.0 79 383-469 3-89 (256)
303 PRK09730 putative NAD(P)-bindi 58.4 38 0.00083 33.9 7.8 78 384-469 3-88 (247)
304 PRK06720 hypothetical protein; 58.3 46 0.00099 32.6 8.1 66 382-455 16-82 (169)
305 PRK07878 molybdopterin biosynt 58.1 1E+02 0.0023 34.4 11.8 36 381-421 41-76 (392)
306 PRK12824 acetoacetyl-CoA reduc 58.1 43 0.00092 33.5 8.1 79 383-469 3-89 (245)
307 PF08659 KR: KR domain; Inter 57.9 31 0.00068 33.8 6.9 99 384-489 2-113 (181)
308 PRK14618 NAD(P)H-dependent gly 57.8 16 0.00035 39.3 5.3 40 383-428 5-44 (328)
309 PRK07791 short chain dehydroge 57.6 38 0.00082 35.6 7.9 80 382-469 6-101 (286)
310 PF02719 Polysacc_synt_2: Poly 57.6 15 0.00033 39.5 4.9 81 385-470 1-87 (293)
311 TIGR01035 hemA glutamyl-tRNA r 57.5 21 0.00046 40.1 6.3 72 381-470 179-250 (417)
312 PRK11880 pyrroline-5-carboxyla 57.2 95 0.0021 32.2 10.8 69 383-469 3-71 (267)
313 PRK06484 short chain dehydroge 57.2 32 0.0007 39.2 7.9 75 383-468 6-87 (520)
314 PRK11559 garR tartronate semia 57.2 48 0.0011 35.0 8.7 66 383-470 3-68 (296)
315 PF01564 Spermine_synth: Sperm 57.1 68 0.0015 33.5 9.6 82 381-470 76-160 (246)
316 cd00401 AdoHcyase S-adenosyl-L 57.0 44 0.00094 37.8 8.6 41 381-427 201-241 (413)
317 cd01491 Ube1_repeat1 Ubiquitin 57.0 1.5E+02 0.0032 31.9 12.2 37 381-422 18-54 (286)
318 PRK03612 spermidine synthase; 56.9 98 0.0021 36.0 11.7 81 381-470 297-383 (521)
319 PRK12743 oxidoreductase; Provi 56.8 46 0.001 33.9 8.2 80 383-470 3-90 (256)
320 PRK08303 short chain dehydroge 56.7 35 0.00075 36.5 7.5 79 382-468 8-103 (305)
321 PRK06123 short chain dehydroge 56.7 46 0.001 33.4 8.1 79 383-469 3-89 (248)
322 TIGR03439 methyl_EasF probable 56.7 1.6E+02 0.0034 32.2 12.5 121 385-513 80-208 (319)
323 COG2242 CobL Precorrin-6B meth 56.6 2.3E+02 0.0049 28.7 13.0 117 380-516 33-153 (187)
324 TIGR02354 thiF_fam2 thiamine b 56.6 1.5E+02 0.0033 29.9 11.7 36 380-420 19-54 (200)
325 PLN02823 spermine synthase 56.5 38 0.00082 37.2 7.8 80 382-470 104-186 (336)
326 PRK12491 pyrroline-5-carboxyla 56.4 2.1E+02 0.0045 30.3 13.2 71 382-469 2-72 (272)
327 PRK08278 short chain dehydroge 56.3 38 0.00082 35.2 7.6 80 383-470 7-100 (273)
328 COG1893 ApbA Ketopantoate redu 56.2 76 0.0016 34.3 10.0 75 383-470 1-77 (307)
329 TIGR01472 gmd GDP-mannose 4,6- 56.1 36 0.00079 36.5 7.6 80 384-470 2-88 (343)
330 PRK12823 benD 1,6-dihydroxycyc 56.0 45 0.00097 33.9 8.0 78 382-468 8-92 (260)
331 PRK07792 fabG 3-ketoacyl-(acyl 56.0 42 0.00092 35.6 8.0 81 382-470 12-99 (306)
332 PRK06841 short chain dehydroge 56.0 46 0.001 33.7 8.0 78 382-470 15-99 (255)
333 PRK07856 short chain dehydroge 55.5 32 0.00068 35.0 6.7 72 382-469 6-84 (252)
334 cd01080 NAD_bind_m-THF_DH_Cycl 55.4 29 0.00063 34.2 6.1 43 381-429 43-86 (168)
335 COG0287 TyrA Prephenate dehydr 55.4 25 0.00054 37.6 6.0 67 382-469 3-73 (279)
336 cd00755 YgdL_like Family of ac 55.2 94 0.002 32.3 10.1 36 381-421 10-45 (231)
337 TIGR00933 2a38 potassium uptak 55.1 13 0.00027 41.5 4.0 35 298-333 113-148 (390)
338 PRK09599 6-phosphogluconate de 55.1 1.1E+02 0.0024 32.6 11.0 68 384-470 2-69 (301)
339 PF13478 XdhC_C: XdhC Rossmann 55.0 25 0.00053 33.5 5.4 75 385-483 1-75 (136)
340 PRK07889 enoyl-(acyl carrier p 55.0 34 0.00075 35.1 7.0 76 382-468 7-93 (256)
341 cd01486 Apg7 Apg7 is an E1-lik 55.0 54 0.0012 35.6 8.5 33 384-421 1-33 (307)
342 PRK12938 acetyacetyl-CoA reduc 54.6 51 0.0011 33.1 8.1 80 383-470 4-91 (246)
343 PRK06223 malate dehydrogenase; 54.6 1.1E+02 0.0025 32.5 11.1 76 383-470 3-80 (307)
344 TIGR00507 aroE shikimate 5-deh 54.6 1.1E+02 0.0024 32.0 10.8 72 382-470 117-188 (270)
345 TIGR01829 AcAcCoA_reduct aceto 54.6 47 0.001 33.1 7.7 78 384-469 2-87 (242)
346 COG0168 TrkG Trk-type K+ trans 54.5 41 0.00089 39.0 8.0 28 304-331 189-216 (499)
347 PRK07533 enoyl-(acyl carrier p 54.3 47 0.001 34.1 7.9 62 382-455 10-77 (258)
348 PRK11064 wecC UDP-N-acetyl-D-m 54.3 46 0.00099 37.5 8.3 39 383-427 4-42 (415)
349 PLN00203 glutamyl-tRNA reducta 54.2 38 0.00083 39.4 7.8 74 382-470 266-339 (519)
350 PRK06114 short chain dehydroge 54.0 49 0.0011 33.7 7.9 80 382-469 8-95 (254)
351 PRK08936 glucose-1-dehydrogena 53.9 55 0.0012 33.4 8.2 80 382-469 7-94 (261)
352 PRK08324 short chain dehydroge 53.8 42 0.00092 40.2 8.3 80 382-470 422-508 (681)
353 COG0499 SAM1 S-adenosylhomocys 53.7 31 0.00067 38.3 6.4 37 381-423 208-244 (420)
354 TIGR02964 xanthine_xdhC xanthi 53.7 42 0.00092 35.1 7.4 85 380-485 98-183 (246)
355 PRK08507 prephenate dehydrogen 53.6 74 0.0016 33.4 9.3 40 384-427 2-41 (275)
356 PLN02695 GDP-D-mannose-3',5'-e 53.4 67 0.0015 35.2 9.3 75 380-469 19-94 (370)
357 COG0421 SpeE Spermidine syntha 53.4 59 0.0013 34.8 8.5 78 383-470 78-159 (282)
358 PRK15461 NADH-dependent gamma- 53.3 43 0.00093 35.7 7.5 65 384-470 3-67 (296)
359 PLN02240 UDP-glucose 4-epimera 53.3 40 0.00086 36.1 7.4 80 382-469 5-90 (352)
360 PRK12825 fabG 3-ketoacyl-(acyl 53.3 55 0.0012 32.5 8.0 79 383-469 7-93 (249)
361 PRK09134 short chain dehydroge 53.2 57 0.0012 33.2 8.2 80 382-469 9-96 (258)
362 cd01492 Aos1_SUMO Ubiquitin ac 53.0 1.3E+02 0.0029 30.1 10.6 36 381-421 20-55 (197)
363 PRK07984 enoyl-(acyl carrier p 53.0 43 0.00092 34.8 7.3 65 382-455 6-73 (262)
364 PRK05482 potassium-transportin 52.9 32 0.00069 40.2 6.8 59 292-350 285-368 (559)
365 PRK05708 2-dehydropantoate 2-r 52.9 1.4E+02 0.0031 32.0 11.4 41 382-428 2-42 (305)
366 PRK06463 fabG 3-ketoacyl-(acyl 52.5 45 0.00098 33.9 7.3 74 382-469 7-88 (255)
367 PRK08945 putative oxoacyl-(acy 52.5 53 0.0011 33.2 7.8 82 381-469 11-101 (247)
368 PRK05225 ketol-acid reductoiso 52.0 11 0.00023 43.1 2.7 67 381-470 35-107 (487)
369 PRK05600 thiamine biosynthesis 51.5 1.6E+02 0.0035 32.7 11.8 36 381-421 40-75 (370)
370 KOG4440 NMDA selective glutama 51.4 10 0.00022 44.2 2.5 53 312-364 612-665 (993)
371 PF13241 NAD_binding_7: Putati 51.4 18 0.00038 32.4 3.6 31 641-674 6-36 (103)
372 PRK06701 short chain dehydroge 51.2 51 0.0011 34.7 7.6 79 383-469 47-133 (290)
373 PF10727 Rossmann-like: Rossma 51.1 40 0.00088 31.7 6.1 108 381-516 9-120 (127)
374 PLN02477 glutamate dehydrogena 50.9 56 0.0012 36.9 8.2 34 381-420 205-239 (410)
375 PRK07411 hypothetical protein; 50.8 1.6E+02 0.0034 33.0 11.7 83 381-470 37-138 (390)
376 PRK07502 cyclohexadienyl dehyd 50.8 80 0.0017 33.7 9.1 70 382-469 6-75 (307)
377 PRK08306 dipicolinate synthase 50.5 38 0.00083 36.3 6.6 69 381-469 151-219 (296)
378 TIGR02632 RhaD_aldol-ADH rhamn 50.4 48 0.0011 39.7 8.1 83 382-470 414-503 (676)
379 TIGR03026 NDP-sugDHase nucleot 50.2 28 0.00061 38.9 5.8 39 384-428 2-40 (411)
380 PRK07985 oxidoreductase; Provi 50.0 59 0.0013 34.3 7.9 79 383-469 50-137 (294)
381 COG4262 Predicted spermidine s 49.9 1.5E+02 0.0032 33.2 10.7 118 380-508 288-413 (508)
382 cd05294 LDH-like_MDH_nadp A la 49.8 87 0.0019 33.8 9.2 77 383-470 1-82 (309)
383 COG3967 DltE Short-chain dehyd 49.8 52 0.0011 34.0 6.9 41 383-429 6-47 (245)
384 PRK06171 sorbitol-6-phosphate 49.4 32 0.0007 35.2 5.7 71 382-469 9-86 (266)
385 PRK08690 enoyl-(acyl carrier p 49.2 45 0.00098 34.4 6.8 65 382-455 6-73 (261)
386 PRK06603 enoyl-(acyl carrier p 49.2 59 0.0013 33.5 7.6 64 383-455 9-75 (260)
387 PRK12744 short chain dehydroge 49.2 60 0.0013 33.0 7.6 81 382-470 8-99 (257)
388 PRK00377 cbiT cobalt-precorrin 49.0 2.8E+02 0.006 27.5 12.2 80 380-468 39-119 (198)
389 PRK12367 short chain dehydroge 48.9 1.4E+02 0.0031 30.6 10.4 73 383-470 15-89 (245)
390 PRK06398 aldose dehydrogenase; 48.8 41 0.00089 34.5 6.3 68 383-469 7-81 (258)
391 COG1004 Ugd Predicted UDP-gluc 48.7 66 0.0014 36.2 8.1 39 384-428 2-40 (414)
392 PRK00141 murD UDP-N-acetylmura 48.4 56 0.0012 37.3 7.9 69 381-468 14-82 (473)
393 TIGR02355 moeB molybdopterin s 48.4 1.2E+02 0.0026 31.5 9.8 37 381-422 23-59 (240)
394 PRK12742 oxidoreductase; Provi 48.3 57 0.0012 32.5 7.2 75 382-469 6-84 (237)
395 PF05185 PRMT5: PRMT5 arginine 48.3 45 0.00097 38.1 7.0 78 382-466 187-264 (448)
396 PRK09260 3-hydroxybutyryl-CoA 48.1 29 0.00062 36.8 5.2 41 383-429 2-42 (288)
397 TIGR00417 speE spermidine synt 47.7 3.4E+02 0.0074 28.4 13.2 80 382-470 73-155 (270)
398 cd00300 LDH_like L-lactate deh 47.4 1.2E+02 0.0026 32.5 9.8 75 385-470 1-76 (300)
399 PRK08415 enoyl-(acyl carrier p 47.1 69 0.0015 33.5 7.8 76 382-469 5-92 (274)
400 PRK06476 pyrroline-5-carboxyla 47.1 1.3E+02 0.0028 31.2 9.7 69 384-469 2-70 (258)
401 PRK12748 3-ketoacyl-(acyl-carr 47.0 69 0.0015 32.6 7.7 79 383-469 6-104 (256)
402 PRK10750 potassium transporter 46.9 47 0.001 38.3 6.9 39 295-334 189-227 (483)
403 PLN00016 RNA-binding protein; 46.9 97 0.0021 34.0 9.3 81 381-469 51-139 (378)
404 PRK14982 acyl-ACP reductase; P 46.9 68 0.0015 35.4 7.9 71 381-470 154-225 (340)
405 PLN02572 UDP-sulfoquinovose sy 46.7 70 0.0015 36.2 8.3 83 381-470 46-146 (442)
406 PRK13304 L-aspartate dehydroge 46.5 1.6E+02 0.0036 30.9 10.5 68 384-469 3-70 (265)
407 PF01370 Epimerase: NAD depend 46.5 68 0.0015 31.7 7.4 73 385-470 1-75 (236)
408 KOG1053 Glutamate-gated NMDA-t 46.2 39 0.00085 41.3 6.1 56 312-367 608-664 (1258)
409 COG0345 ProC Pyrroline-5-carbo 45.9 3.4E+02 0.0074 28.9 12.7 71 383-470 2-72 (266)
410 PRK00050 16S rRNA m(4)C1402 me 45.9 37 0.0008 36.7 5.5 73 388-470 28-100 (296)
411 PRK08655 prephenate dehydrogen 45.8 2.2E+02 0.0048 32.3 12.1 65 384-469 2-67 (437)
412 TIGR01830 3oxo_ACP_reduc 3-oxo 45.7 65 0.0014 32.0 7.1 78 385-470 1-86 (239)
413 PRK06523 short chain dehydroge 45.5 50 0.0011 33.6 6.4 71 382-469 9-86 (260)
414 COG2910 Putative NADH-flavin r 45.1 1.3E+02 0.0029 30.6 8.8 69 385-470 3-72 (211)
415 KOG1205 Predicted dehydrogenas 45.0 66 0.0014 34.5 7.2 83 382-470 12-101 (282)
416 PRK12859 3-ketoacyl-(acyl-carr 44.8 60 0.0013 33.2 6.8 80 382-469 6-105 (256)
417 PF13847 Methyltransf_31: Meth 44.7 55 0.0012 30.8 6.1 74 383-468 5-81 (152)
418 PRK06035 3-hydroxyacyl-CoA deh 44.6 38 0.00083 35.9 5.5 40 383-428 4-43 (291)
419 PRK08229 2-dehydropantoate 2-r 44.6 92 0.002 33.5 8.5 33 383-421 3-35 (341)
420 cd00704 MDH Malate dehydrogena 44.3 1E+02 0.0022 33.7 8.7 38 384-421 2-41 (323)
421 PRK08159 enoyl-(acyl carrier p 44.1 76 0.0016 33.1 7.6 74 383-468 11-96 (272)
422 PRK08703 short chain dehydroge 44.1 72 0.0016 32.0 7.2 41 383-429 7-48 (239)
423 PRK05086 malate dehydrogenase; 44.0 1.9E+02 0.0042 31.2 10.8 110 383-507 1-122 (312)
424 TIGR01831 fabG_rel 3-oxoacyl-( 43.9 78 0.0017 31.6 7.4 64 385-456 1-66 (239)
425 COG1282 PntB NAD/NADP transhyd 43.8 2.3E+02 0.0049 31.7 11.0 58 411-469 356-426 (463)
426 PRK07340 ornithine cyclodeamin 43.6 1E+02 0.0022 33.2 8.5 75 381-470 124-198 (304)
427 PRK07819 3-hydroxybutyryl-CoA 43.4 43 0.00092 35.7 5.6 40 383-428 6-45 (286)
428 cd05292 LDH_2 A subgroup of L- 43.3 1.5E+02 0.0032 32.0 9.7 74 384-470 2-77 (308)
429 PF00072 Response_reg: Respons 43.2 1.5E+02 0.0034 25.3 8.3 60 451-517 34-95 (112)
430 cd00381 IMPDH IMPDH: The catal 43.1 1.3E+02 0.0029 32.7 9.4 135 388-540 89-237 (325)
431 PRK05690 molybdopterin biosynt 43.1 1.9E+02 0.0042 30.1 10.3 36 381-421 31-66 (245)
432 PRK13243 glyoxylate reductase; 42.8 60 0.0013 35.5 6.7 36 381-422 149-184 (333)
433 PRK06077 fabG 3-ketoacyl-(acyl 42.8 1.1E+02 0.0023 30.8 8.2 81 382-470 6-94 (252)
434 PRK06997 enoyl-(acyl carrier p 42.5 62 0.0013 33.4 6.5 62 382-455 6-73 (260)
435 PTZ00117 malate dehydrogenase; 42.0 81 0.0017 34.2 7.5 78 381-470 4-83 (319)
436 COG0654 UbiH 2-polyprenyl-6-me 42.0 27 0.00058 38.5 3.9 58 383-458 3-60 (387)
437 PLN00015 protochlorophyllide r 41.8 74 0.0016 33.8 7.1 77 386-469 1-84 (308)
438 PRK08293 3-hydroxybutyryl-CoA 41.7 45 0.00097 35.3 5.4 41 383-429 4-44 (287)
439 COG1249 Lpd Pyruvate/2-oxoglut 41.6 77 0.0017 36.3 7.6 32 640-674 171-202 (454)
440 PRK12480 D-lactate dehydrogena 41.6 1.1E+02 0.0023 33.5 8.4 36 382-423 146-181 (330)
441 PLN02520 bifunctional 3-dehydr 41.5 1.6E+02 0.0035 34.3 10.3 42 382-429 379-420 (529)
442 TIGR00873 gnd 6-phosphoglucona 41.5 2.2E+02 0.0048 32.7 11.3 73 384-470 1-73 (467)
443 COG0673 MviM Predicted dehydro 41.3 2E+02 0.0043 30.6 10.4 74 382-470 3-77 (342)
444 PRK08220 2,3-dihydroxybenzoate 41.3 73 0.0016 32.1 6.8 72 382-470 8-86 (252)
445 PRK06505 enoyl-(acyl carrier p 41.3 86 0.0019 32.6 7.4 65 382-455 7-74 (271)
446 PRK08993 2-deoxy-D-gluconate 3 41.3 1E+02 0.0023 31.3 7.9 77 382-469 10-94 (253)
447 PRK03369 murD UDP-N-acetylmura 41.2 75 0.0016 36.5 7.5 39 381-425 11-49 (488)
448 PRK07679 pyrroline-5-carboxyla 41.2 2.9E+02 0.0064 29.0 11.5 71 383-470 4-75 (279)
449 cd01489 Uba2_SUMO Ubiquitin ac 41.2 50 0.0011 35.9 5.7 35 384-423 1-35 (312)
450 PRK09310 aroDE bifunctional 3- 41.1 74 0.0016 36.6 7.4 69 382-470 332-400 (477)
451 COG1087 GalE UDP-glucose 4-epi 41.1 49 0.0011 35.9 5.5 74 384-470 2-77 (329)
452 cd01339 LDH-like_MDH L-lactate 41.0 2.1E+02 0.0045 30.5 10.4 74 385-470 1-76 (300)
453 COG2985 Predicted permease [Ge 40.9 17 0.00037 41.5 2.1 57 560-620 294-350 (544)
454 COG0451 WcaG Nucleoside-diphos 40.8 42 0.00092 34.9 5.1 71 384-470 2-74 (314)
455 PLN02985 squalene monooxygenas 40.8 62 0.0013 37.5 6.8 35 381-421 42-76 (514)
456 COG1086 Predicted nucleoside-d 40.8 1.5E+02 0.0033 34.9 9.7 67 379-459 113-179 (588)
457 TIGR01771 L-LDH-NAD L-lactate 40.2 1.2E+02 0.0027 32.5 8.5 72 387-470 1-74 (299)
458 cd01493 APPBP1_RUB Ubiquitin a 40.2 2.5E+02 0.0054 31.9 11.3 36 381-421 19-54 (425)
459 PF13649 Methyltransf_25: Meth 40.2 77 0.0017 27.6 5.9 70 388-468 6-75 (101)
460 PRK05482 potassium-transportin 40.0 38 0.00081 39.7 4.8 72 289-360 417-502 (559)
461 COG0169 AroE Shikimate 5-dehyd 40.0 69 0.0015 34.4 6.5 76 381-470 125-200 (283)
462 TIGR02685 pter_reduc_Leis pter 40.0 94 0.002 31.9 7.4 80 383-469 2-93 (267)
463 PF03721 UDPG_MGDP_dh_N: UDP-g 39.9 56 0.0012 32.6 5.5 41 383-429 1-41 (185)
464 PRK07370 enoyl-(acyl carrier p 39.9 79 0.0017 32.5 6.8 31 383-419 7-40 (258)
465 PTZ00367 squalene epoxidase; P 39.6 40 0.00087 39.6 5.0 35 381-421 32-66 (567)
466 PRK06753 hypothetical protein; 39.5 28 0.00061 37.7 3.6 33 384-422 2-34 (373)
467 PRK06130 3-hydroxybutyryl-CoA 39.2 51 0.0011 35.1 5.4 41 383-429 5-45 (311)
468 PRK09288 purT phosphoribosylgl 39.1 73 0.0016 35.0 6.8 74 380-469 10-84 (395)
469 PRK06128 oxidoreductase; Provi 38.8 96 0.0021 32.7 7.4 79 383-469 56-143 (300)
470 PF10883 DUF2681: Protein of u 38.8 61 0.0013 28.7 4.8 32 160-191 4-35 (87)
471 PRK06988 putative formyltransf 38.6 83 0.0018 34.1 6.9 76 383-469 3-86 (312)
472 PRK11749 dihydropyrimidine deh 38.6 55 0.0012 37.0 5.9 34 381-420 139-172 (457)
473 PLN02206 UDP-glucuronate decar 38.5 1.5E+02 0.0033 33.6 9.4 74 381-469 118-192 (442)
474 COG2085 Predicted dinucleotide 38.5 2.7E+02 0.0058 28.7 10.1 131 383-548 2-134 (211)
475 PF01494 FAD_binding_3: FAD bi 38.5 33 0.00072 36.1 3.8 33 384-422 3-35 (356)
476 PRK07530 3-hydroxybutyryl-CoA 38.5 54 0.0012 34.7 5.5 41 383-429 5-45 (292)
477 TIGR01758 MDH_euk_cyt malate d 38.4 46 0.001 36.3 5.0 38 384-421 1-40 (324)
478 PF01266 DAO: FAD dependent ox 38.4 37 0.0008 35.7 4.2 31 384-420 1-31 (358)
479 PRK05865 hypothetical protein; 38.3 1.7E+02 0.0037 36.3 10.2 69 384-470 2-71 (854)
480 PRK08618 ornithine cyclodeamin 38.0 1.4E+02 0.003 32.4 8.5 76 382-470 127-202 (325)
481 PTZ00318 NADH dehydrogenase-li 37.9 31 0.00068 38.6 3.7 37 379-421 7-43 (424)
482 PRK13403 ketol-acid reductoiso 37.7 2.3E+02 0.005 31.2 10.0 67 381-470 15-81 (335)
483 KOG1430 C-3 sterol dehydrogena 37.7 1E+02 0.0022 34.3 7.5 78 381-468 3-83 (361)
484 TIGR03022 WbaP_sugtrans Undeca 37.1 2.3E+02 0.0049 32.1 10.5 38 382-421 125-162 (456)
485 PRK10084 dTDP-glucose 4,6 dehy 37.0 90 0.0019 33.5 7.0 78 384-470 2-83 (352)
486 KOG4169 15-hydroxyprostaglandi 37.0 72 0.0016 33.5 5.7 68 382-456 6-73 (261)
487 PRK01710 murD UDP-N-acetylmura 37.0 96 0.0021 35.2 7.5 70 382-467 14-84 (458)
488 COG4221 Short-chain alcohol de 36.9 1.2E+02 0.0026 31.9 7.4 77 383-469 7-90 (246)
489 PLN03139 formate dehydrogenase 36.8 1.9E+02 0.0042 32.4 9.6 86 381-492 198-283 (386)
490 TIGR01142 purT phosphoribosylg 36.8 62 0.0013 35.4 5.7 70 384-469 1-71 (380)
491 PRK12749 quinate/shikimate deh 36.2 1.6E+02 0.0034 31.6 8.5 80 382-470 124-206 (288)
492 TIGR01179 galE UDP-glucose-4-e 36.2 89 0.0019 32.5 6.6 77 384-469 1-79 (328)
493 COG2084 MmsB 3-hydroxyisobutyr 36.1 1.1E+02 0.0024 33.0 7.2 66 384-470 2-67 (286)
494 PRK06129 3-hydroxyacyl-CoA deh 36.0 59 0.0013 34.8 5.3 40 383-428 3-42 (308)
495 PRK07236 hypothetical protein; 36.0 37 0.00079 37.3 3.8 36 381-422 5-40 (386)
496 PRK12409 D-amino acid dehydrog 36.0 37 0.0008 37.4 3.9 32 384-421 3-34 (410)
497 PLN02712 arogenate dehydrogena 35.7 1.3E+02 0.0029 36.1 8.6 36 381-422 51-86 (667)
498 PRK09009 C factor cell-cell si 35.5 1.2E+02 0.0026 30.2 7.2 73 384-470 2-77 (235)
499 PLN02712 arogenate dehydrogena 35.4 2.2E+02 0.0047 34.3 10.3 68 381-470 368-435 (667)
500 PTZ00325 malate dehydrogenase; 35.4 1.6E+02 0.0034 32.2 8.4 78 382-470 8-86 (321)
No 1
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.97 E-value=1.5e-30 Score=284.58 Aligned_cols=232 Identities=20% Similarity=0.230 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHhhhhhccC------CCHHHHHHHHHHhhhccCCCC-ccCCCCCeEEeeeehhhhHHHHHHHHHHHHH-
Q 005788 292 LFATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHA-DRVGTGPRIVSVSISSGGMLIFAMMLGLVSD- 363 (677)
Q Consensus 292 l~~~l~lil~g~l~~~~iE~------~s~~dAlw~t~vTiTTvGyg~-~p~t~~gRi~~v~lil~Gi~ifa~lig~it~- 363 (677)
++++..++++|+++++++++ .++.|||||+++|+||+|||+ .|.+..||+|+++++++|+++|++.++.++.
T Consensus 141 ~~~~~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p 220 (393)
T PRK10537 141 VISITSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGP 220 (393)
T ss_pred HHHHHHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566677777777764 699999999999999999996 4888899999999999999999998887765
Q ss_pred HHHHhhhhhccCc-cceeecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEE
Q 005788 364 AISEKVDSLRKGK-SEVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVIC 442 (677)
Q Consensus 364 ~i~~~i~~lr~G~-~~v~~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~ 442 (677)
.+.+++++..+++ .....+||+||||||+.+..++++|.+.+ .+++++|+|+. ++.. ..++.+
T Consensus 221 ~i~~~l~~~~~~~~~~~~~k~HvII~G~g~lg~~v~~~L~~~g------~~vvVId~d~~--~~~~--------~~g~~v 284 (393)
T PRK10537 221 VIRGNLKRLVKGRISHMHRKDHFIICGHSPLAINTYLGLRQRG------QAVTVIVPLGL--EHRL--------PDDADL 284 (393)
T ss_pred HHHHHHHHHHHhhhhhcccCCeEEEECCChHHHHHHHHHHHCC------CCEEEEECchh--hhhc--------cCCCcE
Confidence 4555554433333 22345899999999999999999997653 57888887642 2221 235678
Q ss_pred EEeCCCCHHHHhccCcccccEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCCHHHHHHcCCCeeEEE
Q 005788 443 RSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETV 522 (677)
Q Consensus 443 I~Gd~~~~e~L~rA~I~~A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~~~~l~~aGad~VevV 522 (677)
+.||++++++|++||+++|+++|++++ +|++|+.+++++|+++| +++|||++.|+++.++++.+|+| .+|
T Consensus 285 I~GD~td~e~L~~AgI~~A~aVI~~t~------dD~~Nl~ivL~ar~l~p--~~kIIa~v~~~~~~~~L~~~GaD--~VI 354 (393)
T PRK10537 285 IPGDSSDSAVLKKAGAARARAILALRD------NDADNAFVVLAAKEMSS--DVKTVAAVNDSKNLEKIKRVHPD--MIF 354 (393)
T ss_pred EEeCCCCHHHHHhcCcccCCEEEEcCC------ChHHHHHHHHHHHHhCC--CCcEEEEECCHHHHHHHHhcCCC--EEE
Confidence 999999999999999999999999996 49999999999999998 67999999999999999999999 458
Q ss_pred echHHHHHHHHHHhcCCcH-HHHHHHHh
Q 005788 523 VAHDVIGRLMIQCALQPGL-AQIWEDIL 549 (677)
Q Consensus 523 v~~el~a~lLaq~a~~Pgl-~~Vl~~Ll 549 (677)
++.++.++.|++.+..+.+ .+.+++++
T Consensus 355 sp~~l~g~~la~~l~g~~I~~~~i~~~~ 382 (393)
T PRK10537 355 SPQLLGSELLARTLNGEEIDNDMITSML 382 (393)
T ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 8888899999999987655 34555554
No 2
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=99.95 E-value=4.9e-28 Score=231.16 Aligned_cols=202 Identities=50% Similarity=0.780 Sum_probs=177.3
Q ss_pred ccEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCCHHHHHHcCCCeeEEEechHHHHHHHHHHhcCCc
Q 005788 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (677)
Q Consensus 461 A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~~~~l~~aGad~VevVv~~el~a~lLaq~a~~Pg 540 (677)
|++||+++.+++++++|+++++.+|++..+..+...++|||+.|.+++++++..|++.|+.| +++++++|.||+++||
T Consensus 1 ARaIIiL~~k~d~ye~Da~a~lsVLaL~~v~e~~~g~vIVE~S~~~t~~LlKsv~G~~VetV--~dv~skL~VQCsRQ~G 78 (206)
T PF06241_consen 1 ARAIIILAEKEDRYESDADAFLSVLALQPVKEGLSGHVIVEVSDSDTEQLLKSVSGLKVETV--HDVISKLMVQCSRQPG 78 (206)
T ss_pred CceEEEeCCCCCcchhhHHHHHHHhhcccccccCcccEEEEecCCChHHHHHhhcCceeeeH--HHHHHHHHHHhccCcc
Confidence 78999999999999999999999999999887778999999999999999999999988888 8899999999999999
Q ss_pred HHHHHHHHhcCCCceEEEecCCCCCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 005788 541 LAQIWEDILGFENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (677)
Q Consensus 541 l~~Vl~~Ll~~~g~ei~i~~~p~lvGktf~el~~~~~~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg~~~di~~ 620 (677)
+.++|+++++++.++||+..||++.|++|.|+.+.|+++++||+.| +|++.+||++|+++++||+++|||+...-.+
T Consensus 79 L~~Iy~~iL~~~k~vf~l~~~P~L~Gm~y~dvr~~Fpdav~CGv~r---~GkI~fhP~Dd~vL~e~DklLvIa~~~~~~~ 155 (206)
T PF06241_consen 79 LAQIYEDILGFEKNVFNLKRWPQLDGMKYRDVRRSFPDAVVCGVKR---DGKIVFHPDDDYVLREGDKLLVIAPVNGKRP 155 (206)
T ss_pred HHHHHHHHhCCCCcEEEEecCcccCCcCHHHHHhcCCcceeeeeee---CCeeEECCCCCceeecCCEEEEEeecCCccc
Confidence 9999999999999999999999999999999999999999999998 6899999999999999999999999876532
Q ss_pred CCCCCccccccccCCCCCCCCCceEEEEccccCHHHHHHHHHhhcCCccEE
Q 005788 621 PGPLPEVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVIFLQLCLLSLV 671 (677)
Q Consensus 621 ~~~~~~v~~~~~~~~~~~~~~~~rVLI~Gwgr~~~~~i~~Ld~~~~~~~~~ 671 (677)
-...+.+.. +... .++..++.++++|..+..+|+....+.+..||+-
T Consensus 156 ~~~~~~v~~---~n~~-~~~~~~~~~~e~~k~rl~nivkrp~kslsk~Sd~ 202 (206)
T PF06241_consen 156 QTAYPSVRM---ENIT-SPEDVRKHAFELWKTRLENIVKRPNKSLSKGSDW 202 (206)
T ss_pred eEecccccc---cccc-CCCchhhhhhhhhHhHHHHHHhCccccccccccc
Confidence 111222211 1112 2345667889999999999999999888877763
No 3
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.2e-23 Score=214.62 Aligned_cols=215 Identities=19% Similarity=0.236 Sum_probs=181.0
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~a 463 (677)
.++|+|.|+.|..+++.|...+ +.|+++|.|++.+++.+.+ ..++..+.||++++++|++||+++||+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g------~~Vv~Id~d~~~~~~~~~~------~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEG------HNVVLIDRDEERVEEFLAD------ELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCC------CceEEEEcCHHHHHHHhhh------hcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 5899999999999999999874 7899999999988875442 257889999999999999999999999
Q ss_pred EEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCCHHHHHHcCCCeeEEEechHHHHHHHHHHhcCCcHHH
Q 005788 464 IIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQ 543 (677)
Q Consensus 464 VIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~~~~l~~aGad~VevVv~~el~a~lLaq~a~~Pgl~~ 543 (677)
+|++++ +|+.|+..|+.+++... .+++||+++++++.+.+++.|++ .+|.|+..++..+++.+..|++.+
T Consensus 70 vva~t~------~d~~N~i~~~la~~~~g--v~~viar~~~~~~~~~~~~~g~~--~ii~Pe~~~~~~l~~~i~~p~~~~ 139 (225)
T COG0569 70 VVAATG------NDEVNSVLALLALKEFG--VPRVIARARNPEHEKVLEKLGAD--VIISPEKLAAKRLARLIVTPGALD 139 (225)
T ss_pred EEEeeC------CCHHHHHHHHHHHHhcC--CCcEEEEecCHHHHHHHHHcCCc--EEECHHHHHHHHHHHHhcCCChhe
Confidence 999996 48999988888777432 46899999999999999999988 457777788999999999999999
Q ss_pred HHHHHhc-CCCceEEEecCCCCCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 005788 544 IWEDILG-FENAEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (677)
Q Consensus 544 Vl~~Ll~-~~g~ei~i~~~p~lvGktf~el~~~~-~~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg~~~di~~~ 621 (677)
++...-+ .+..++.+.+.++++|++++|+..++ .++++++|.| ++...+.|+++++|++||+++++|..+.+.++
T Consensus 140 ~~~~~~~~~~~~~~~v~~~~~~~g~~L~el~~~~~~~~~vvai~r---~~~~~~~p~g~~~l~~gD~l~v~~~~~~i~~~ 216 (225)
T COG0569 140 VLELAGGDAEVIEEKVAEDSPLAGKTLRELDLRLPYDVNVIAIKR---GGNELIIPRGDTTLEAGDRLIVIGAPEALREV 216 (225)
T ss_pred EEeecCCcceEEEEEecCCCccCCcCHHHhcccCCCCcEEEEEec---CCCceecCCCCCEecCCCEEEEEEcHHHHHHH
Confidence 8764321 11234445556799999999998665 4899999998 33378999999999999999999999988776
Q ss_pred CC
Q 005788 622 GP 623 (677)
Q Consensus 622 ~~ 623 (677)
..
T Consensus 217 ~~ 218 (225)
T COG0569 217 EE 218 (225)
T ss_pred HH
Confidence 54
No 4
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.91 E-value=4.7e-23 Score=229.34 Aligned_cols=243 Identities=16% Similarity=0.129 Sum_probs=196.7
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~ 462 (677)
.||+|||+|..|..++++|...+ +.|+++|.+++..+.+.+ ..++.++.||+++.++|+++++++|+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g------~~v~vid~~~~~~~~~~~-------~~~~~~~~gd~~~~~~l~~~~~~~a~ 67 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN------NDVTVIDTDEERLRRLQD-------RLDVRTVVGNGSSPDVLREAGAEDAD 67 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHh-------hcCEEEEEeCCCCHHHHHHcCCCcCC
Confidence 38999999999999999998754 688999999988776432 13578899999999999999999999
Q ss_pred EEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCC---HHHH--HHcCCCeeEEEechHHHHHHHHHHhc
Q 005788 463 AIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDN---EPLV--KLVGGELIETVVAHDVIGRLMIQCAL 537 (677)
Q Consensus 463 aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~---~~~l--~~aGad~VevVv~~el~a~lLaq~a~ 537 (677)
++|++++ +|..|+.+++.+|.+++ ..++|+++.+.++ .+.+ +.+|++ .+|.+.+++|..|++.+.
T Consensus 68 ~vi~~~~------~~~~n~~~~~~~r~~~~--~~~ii~~~~~~~~~~~~~l~~~~~~G~~--~vi~p~~~~a~~l~~~l~ 137 (453)
T PRK09496 68 LLIAVTD------SDETNMVACQIAKSLFG--APTTIARVRNPEYAEYDKLFSKEALGID--LLISPELLVAREIARLIE 137 (453)
T ss_pred EEEEecC------ChHHHHHHHHHHHHhcC--CCeEEEEECCccccchhhhhhhhcCCcc--EEECHHHHHHHHHHHHhc
Confidence 9999996 48899999999999976 5689999988876 3333 668998 457788899999999999
Q ss_pred CCcHHHHHHHHhcC--CCceEEEecCCCCCCCcHHhHhhh-C-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEE
Q 005788 538 QPGLAQIWEDILGF--ENAEFYIKRWPQLDDLRFEEVVIS-F-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIA 613 (677)
Q Consensus 538 ~Pgl~~Vl~~Ll~~--~g~ei~i~~~p~lvGktf~el~~~-~-~~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg 613 (677)
.|+..++++ +.+. .-.++.+.+.++++|+++.|+..+ . .++.++|+.| +|+ .+.|+++++|++||+|+++|
T Consensus 138 ~~~~~~~~~-~~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~i~r---~~~-~~~p~~~~~l~~gD~l~v~g 212 (453)
T PRK09496 138 YPGALDVEE-FADGRVQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVAIFR---GGR-LIIPRGDTVIEAGDEVYFIG 212 (453)
T ss_pred CCCceEeee-ecCCeEEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEEEEE---CCE-EEcCCCCcEecCCCEEEEEe
Confidence 999876543 1111 113445556688999999999865 3 4899999988 455 56899999999999999999
Q ss_pred eCCCCCCCCCCCccccccccCCCCCCCCCceEEEEccccCHHHHHHHHHh
Q 005788 614 EDDDTYAPGPLPEVCKRSFLKIPDPPKYPEKILFCGWRRDIDDMIMVIFL 663 (677)
Q Consensus 614 ~~~di~~~~~~~~v~~~~~~~~~~~~~~~~rVLI~Gwgr~~~~~i~~Ld~ 663 (677)
+.+++.++..... ......++++|||||+.+..+++.|.+
T Consensus 213 ~~~~l~~~~~~~~----------~~~~~~~~iiIiG~G~~g~~l~~~L~~ 252 (453)
T PRK09496 213 AREHIRAVMSEFG----------RLEKPVKRVMIVGGGNIGYYLAKLLEK 252 (453)
T ss_pred CHHHHHHHHHHhC----------ccCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 9998877654311 122357899999999999999999976
No 5
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.90 E-value=1.7e-24 Score=234.56 Aligned_cols=327 Identities=20% Similarity=0.298 Sum_probs=244.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhhhccC-------------CCHHHHHHHHHHhhhccCCCCc-cCCCCCeEEee
Q 005788 279 CFSVYPYAKLLALLFATIFLIIFGGLALYAVSD-------------SSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSV 344 (677)
Q Consensus 279 ~~s~~~~~~l~~Ll~~~l~lil~g~l~~~~iE~-------------~s~~dAlw~t~vTiTTvGyg~~-p~t~~gRi~~v 344 (677)
.+.++...++..|+.+.+.+.+.++-+.+.+|+ .++++++|+.++|++|+|||+. -.+..||+|++
T Consensus 241 ilktsssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmv 320 (1103)
T KOG1420|consen 241 ILKTSSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMV 320 (1103)
T ss_pred HHhccchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHH
Confidence 344444445555555555555556666666663 4799999999999999999975 68889999999
Q ss_pred eehhhhHHHHHHHHHHHHHHHHHhhhhhccCc-cceeecCeEEEEeccch--HHHHHHHHHHhcccCCCCeEEEEEcC-C
Q 005788 345 SISSGGMLIFAMMLGLVSDAISEKVDSLRKGK-SEVIEKNHILILGWSDK--LGSLLKQLAVANKSIGGGVIVVLAER-D 420 (677)
Q Consensus 345 ~lil~Gi~ifa~lig~it~~i~~~i~~lr~G~-~~v~~knHIII~G~g~~--g~~Ll~eL~~~~~s~~~~~iVVLiD~-d 420 (677)
+.+++|+..|+.-+.-+++.+.++. ++ -|. .....+.|||+||+-.. ...+++.+.+++... -...||...+ .
T Consensus 321 ffil~glamfasyvpeiielignr~-ky-ggeyk~ehgkkhivvcghityesvshflkdflhedrdd-vdvevvflhr~~ 397 (1103)
T KOG1420|consen 321 FFILGGLAMFASYVPEIIELIGNRK-KY-GGEYKAEHGKKHIVVCGHITYESVSHFLKDFLHEDRDD-VDVEVVFLHRIS 397 (1103)
T ss_pred HHHHHHHHHHHhhhHHHHHHHcccc-cc-CceeehhcCCeeEEEecceeHHHHHHHHHHHhhccccc-cceEEEEEecCC
Confidence 9999999999999998888887751 11 122 22457899999998753 567778887665322 2234444333 3
Q ss_pred hH-HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccEEEEecCC--CCCccchHHHHHHHHHHhhhcCCCCce
Q 005788 421 KE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASD--ENADQSDARALRVVLSLTGVKEGLRGH 497 (677)
Q Consensus 421 ~e-~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~aVIIltdd--~~~~~sDa~NI~i~Lsar~l~p~l~~~ 497 (677)
|+ ++|.+.++ + -+.|.+.+|..+++.+|.|+.+++||++.++++. .++|.+|+.||+.++++|++.+ +.+
T Consensus 398 pdleleglfkr-h----ft~veffqgtvmnp~dl~rvki~~adaclvlankyc~dpdaedaanimrvisiknys~--dir 470 (1103)
T KOG1420|consen 398 PDLELEGLFKR-H----FTQVEFFQGTVMNPHDLARVKIESADACLVLANKYCADPDAEDAANIMRVISIKNYSP--DIR 470 (1103)
T ss_pred CCcchHHHHhh-h----eeeEEEecccccChhhhhheeccccceeeeecccccCCCChhhhhhheEEEEeccCCC--chh
Confidence 32 34444432 2 2689999999999999999999999999999998 5788999999999999999998 678
Q ss_pred EEEEeCCCCCHHHHHHc------CCCeeEEEechHHHHHHHHHHhcCCcHHHHHHHHhcC-------------------C
Q 005788 498 VVVEMSDLDNEPLVKLV------GGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGF-------------------E 552 (677)
Q Consensus 498 IIArv~d~e~~~~l~~a------Gad~VevVv~~el~a~lLaq~a~~Pgl~~Vl~~Ll~~-------------------~ 552 (677)
+|.++..-.|..++... .+| ++|+-.|+.-..|||+++.||+++.+.+|+.- -
T Consensus 471 vi~qlmqyhnkayllnipswdwk~gd--dviclaelklgfiaqsclapgfstmmanlfamrsfktsp~~~~w~ndylrg~ 548 (1103)
T KOG1420|consen 471 VITQLMQYHNKAYLLNIPSWDWKEGD--DVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKTSPEEDTWQNDYLRGV 548 (1103)
T ss_pred HHHHHHHhhchheeecCCCcccccCC--ceEEehhhhhhhhHHHhhcccHHHHHHHHHHHHhccCCcccchhHHHHHhhc
Confidence 88888776666555321 123 57888999989999999999999999988742 1
Q ss_pred CceEEEecC-CCCCCCcHHhHhhh-C--CCeEEEEEEEee---cCCeEEeCCCCCceecCCCEEEEEEeCCC
Q 005788 553 NAEFYIKRW-PQLDDLRFEEVVIS-F--PDAIPCGIKVAA---EGGKIILNPDDNYVLKEGDEVLVIAEDDD 617 (677)
Q Consensus 553 g~ei~i~~~-p~lvGktf~el~~~-~--~~aiVIGI~r~~---~~G~~ilnP~~d~vI~~GD~LiVIg~~~d 617 (677)
|.|.|.+.. |.|+|++|.++... | -+.++++|+-.. .+.++.+||.+..+|++|..-++||.+.+
T Consensus 549 gmemyte~lsp~f~g~sfp~a~elcf~klkllllaie~k~een~es~i~inpg~h~kiq~~tqgffiaqsad 620 (1103)
T KOG1420|consen 549 GMEMYTEYLSPAFVGLSFPTACELCFVKLKLLLLAIEYKDEENRESRILINPGNHLKIQEGTQGFFIAQSAD 620 (1103)
T ss_pred chhHhhhhcCHhhcCCchHHHHHHHHHHHHHhheeeeeccccCccceeEeCCCCCceeccCCceEEEecchH
Confidence 346666654 57999999987654 3 257788886421 13468999999999999999999998643
No 6
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.88 E-value=1.1e-21 Score=218.26 Aligned_cols=215 Identities=17% Similarity=0.181 Sum_probs=180.8
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
..+|+||||+|+.|..++++|...+ +.|+++|.|++..+++.++ ..++.++.||+++.+.|+++++++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~------~~v~vid~~~~~~~~~~~~------~~~~~~i~gd~~~~~~L~~~~~~~ 297 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEG------YSVKLIERDPERAEELAEE------LPNTLVLHGDGTDQELLEEEGIDE 297 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC------CeEEEEECCHHHHHHHHHH------CCCCeEEECCCCCHHHHHhcCCcc
Confidence 4799999999999999999998753 7899999999887765442 235678999999999999999999
Q ss_pred ccEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCCHHHHHHcCCCeeEEEechHHHHHHHHHHhcCCc
Q 005788 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (677)
Q Consensus 461 A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~~~~l~~aGad~VevVv~~el~a~lLaq~a~~Pg 540 (677)
|+++|++++ +|..|+.+++.+|++++ .+||+++.++++.+.++.+|++ .++.+++++++.|++.+..|+
T Consensus 298 a~~vi~~~~------~~~~n~~~~~~~~~~~~---~~ii~~~~~~~~~~~~~~~g~~--~vi~p~~~~~~~~~~~~~~~~ 366 (453)
T PRK09496 298 ADAFIALTN------DDEANILSSLLAKRLGA---KKVIALVNRPAYVDLVEGLGID--IAISPRQATASEILRHVRRGD 366 (453)
T ss_pred CCEEEECCC------CcHHHHHHHHHHHHhCC---CeEEEEECCcchHHHHHhcCCC--EEECHHHHHHHHHHHHhhccc
Confidence 999999996 47899999999999874 4899999999999999999998 457777888999999999999
Q ss_pred HHHHHHHHhc-CCCceEEEecCCCCCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCC-C
Q 005788 541 LAQIWEDILG-FENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDD-T 618 (677)
Q Consensus 541 l~~Vl~~Ll~-~~g~ei~i~~~p~lvGktf~el~~~~~~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg~~~d-i 618 (677)
+..+.....+ .+..++.+.+.++++|++++|+... .++.++++.| +|+. ++|+++++|++||+|+++|+.++ +
T Consensus 367 ~~~~~~~~~~~~~~~~~~v~~~s~~~g~~l~el~l~-~~~~i~~i~r---~~~~-~~p~~~~~l~~gD~l~v~~~~~~~~ 441 (453)
T PRK09496 367 IVAVHSLRRGAAEAIEAVAHETSKVVGKPLKDLKLP-KGVLIGAIVR---GGEV-IIPTGDTVIEPGDHVIVFVLDKKFV 441 (453)
T ss_pred hhhhhhhcCCcEEEEEEEeCCCChhccCCHHHcCCC-CCCEEEEEEE---CCEE-EcCCCCcEECCCCEEEEEEcCcchH
Confidence 8776652111 1234667777889999999999642 4899999998 5665 88999999999999999999999 7
Q ss_pred CCCCC
Q 005788 619 YAPGP 623 (677)
Q Consensus 619 ~~~~~ 623 (677)
.++..
T Consensus 442 ~~~~~ 446 (453)
T PRK09496 442 PDVEK 446 (453)
T ss_pred HHHHH
Confidence 66543
No 7
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=99.75 E-value=5.8e-18 Score=183.42 Aligned_cols=319 Identities=13% Similarity=0.163 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc-----CCCHHHHHHHHHHhhhccCCCCc-cCCCCCeEEeeeehhhhHHHHHHHH
Q 005788 285 YAKLLALLFATIFLIIFGGLALYAVS-----DSSFAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMML 358 (677)
Q Consensus 285 ~~~l~~Ll~~~l~lil~g~l~~~~iE-----~~s~~dAlw~t~vTiTTvGyg~~-p~t~~gRi~~v~lil~Gi~ifa~li 358 (677)
+++++.|..+++.+++.|.+..-.+. ..++|.++|++++|++|+|||+. |.-++..+.+++++-+.++++...+
T Consensus 184 ~~ql~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~ 263 (1087)
T KOG3193|consen 184 FRQLLLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQL 263 (1087)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHH
Confidence 44555555555555555555544432 36899999999999999999985 6666777777766666666665554
Q ss_pred HHHHHHHHHhhhhhccCcc--c-eeecCeEEEEeccchHH---HHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHh-h
Q 005788 359 GLVSDAISEKVDSLRKGKS--E-VIEKNHILILGWSDKLG---SLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAK-L 431 (677)
Q Consensus 359 g~it~~i~~~i~~lr~G~~--~-v~~knHIII~G~g~~g~---~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~-~ 431 (677)
--+...-.+ +-+.|-. . .....|+|+|--.-... .+++|+... +... ...||+.. |.+++...+. +
T Consensus 264 ~~l~~tw~e---rqk~g~~~ss~~~~e~hvvv~~ttl~~~~i~dfl~efyah-p~~q-~~~ivlls--p~eld~~~rmll 336 (1087)
T KOG3193|consen 264 DELGQTWSE---RQKSGTDFSSWNGVESHVVVTITTLEVEFIRDFLEEFYAH-PENQ-RIQIVLLS--PAELDNQTRMLL 336 (1087)
T ss_pred HHHHHHHHH---HhhcCCCccccccccceEEEEEeeeeHHHHHHHHHHHhcC-cccc-cEEEEEec--hHHhcchhhhhe
Confidence 444432222 2233332 1 23578999997665443 445555432 1111 23344432 2223222221 1
Q ss_pred hcccCCccEEEEEeCCCCHHHHhccCcccccEEEEecCC--CCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCCHH
Q 005788 432 EFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASD--ENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEP 509 (677)
Q Consensus 432 ~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~aVIIltdd--~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~~~ 509 (677)
+.+.++.+|.+++|+....++|+||++..|+++++++.. .+....|+.+|+...++|...| +++-.+++-.+|..-
T Consensus 337 kiplwnnrvhyv~gs~lrd~dl~ra~~~~s~acfilsar~~~~k~a~dehtilrswaikdfap--nv~qyvqifr~e~k~ 414 (1087)
T KOG3193|consen 337 KIPLWNNRVHYVRGSSLRDEDLERANVATSKACFILSARHVNRKVATDEHTILRSWAIKDFAP--NVKQYVQIFRAETKM 414 (1087)
T ss_pred eccccccceeeecccccccchhhhhhhcccchheeeehhhhccccccchhhHHHHHhhhhcCC--chHHHhhhhchhhhh
Confidence 345678899999999999999999999999999999876 2345689999999999999998 666677777777766
Q ss_pred HHHHcCCCeeEEEechHHHHHHHHHHhcCCcHHHHHHHHhcC--------------------CCceEEEec--C----CC
Q 005788 510 LVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGF--------------------ENAEFYIKR--W----PQ 563 (677)
Q Consensus 510 ~l~~aGad~VevVv~~el~a~lLaq~a~~Pgl~~Vl~~Ll~~--------------------~g~ei~i~~--~----p~ 563 (677)
+.+.+ + .+|+.+|+.-.++|..+.+||++.+..-|+.. .|+|+|-.. + -+
T Consensus 415 hi~~a--e--~~icedefkyallannc~cpg~st~itll~htsrg~egq~s~e~whk~yg~~sgne~y~i~~~dskff~e 490 (1087)
T KOG3193|consen 415 HIEHA--E--VLICEDEFKYALLANNCICPGISTFITLLMHTSRGEEGQKSTEPWHKVYGFHSGNEMYQIKVQDSKFFCE 490 (1087)
T ss_pred hhhhh--e--eEEehhhHHHHHHhcCCcCCCHHHHHHHHhhhccccccCCCCchHHHHhccccCCeEEEEEecccceeee
Confidence 66644 3 35888889999999999999999998877642 145666332 2 37
Q ss_pred CCCCcHHhHhhh---CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCC
Q 005788 564 LDDLRFEEVVIS---FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDD 616 (677)
Q Consensus 564 lvGktf~el~~~---~~~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg~~~ 616 (677)
++|++|...... ..|+-++|+.-......+.+||.+..++++.|.+|.++-.+
T Consensus 491 y~gksfs~~sfhahk~ygi~li~v~p~~~~~~~~lnpg~~hi~~~~dt~yym~lt~ 546 (1087)
T KOG3193|consen 491 YVGKSFSSTSFHAHKEYGIGLIAVSPDGDTSRMKLNPGSSHIIQPTDTVYYMGLTN 546 (1087)
T ss_pred ecccccchhhhhhhhhcCeEEEEEcCCCCcceeecCCCcccccCCCCeEEEEeccc
Confidence 899999876644 24889999964211235789999999999999999998643
No 8
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.73 E-value=6.8e-17 Score=185.43 Aligned_cols=141 Identities=16% Similarity=0.171 Sum_probs=124.9
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
.+||+||||+|+.|..++++|.+.+ ++|+++|+|+++.++..+ .++.++.||++++++|+++++++
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~g------~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a~i~~ 481 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAAG------IPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLAHLDC 481 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHCC------CCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhcCccc
Confidence 4799999999999999999998764 789999999998877532 36788999999999999999999
Q ss_pred ccEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCCHHHHHHcCCCeeEEEechHHHHHHHHHHhcCCc
Q 005788 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 540 (677)
Q Consensus 461 A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~~~~l~~aGad~VevVv~~el~a~lLaq~a~~Pg 540 (677)
||++++++++ |.+|..++.++|+.+| +.+||||++|+++.+.++.+|+| .+|.|++..++.+++.+.+|+
T Consensus 482 a~~viv~~~~------~~~~~~iv~~~~~~~~--~~~iiar~~~~~~~~~l~~~Gad--~vv~p~~~~a~~i~~~l~~~~ 551 (558)
T PRK10669 482 ARWLLLTIPN------GYEAGEIVASAREKRP--DIEIIARAHYDDEVAYITERGAN--QVVMGEREIARTMLELLETPP 551 (558)
T ss_pred cCEEEEEcCC------hHHHHHHHHHHHHHCC--CCeEEEEECCHHHHHHHHHcCCC--EEEChHHHHHHHHHHHhcCCC
Confidence 9999999864 7778777888899887 67999999999999999999999 458888899999999999999
Q ss_pred HHHHH
Q 005788 541 LAQIW 545 (677)
Q Consensus 541 l~~Vl 545 (677)
..++.
T Consensus 552 ~~~~~ 556 (558)
T PRK10669 552 AGEVV 556 (558)
T ss_pred ccccc
Confidence 88764
No 9
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.67 E-value=1.7e-15 Score=175.16 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=112.6
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
.++|+||||+|+.|..+++.|.+.+ ++++++|.|++.++...+ .+..++.||+++++.|++||+++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~g------~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~ 464 (601)
T PRK03659 399 DKPQVIIVGFGRFGQVIGRLLMANK------MRITVLERDISAVNLMRK--------YGYKVYYGDATQLELLRAAGAEK 464 (601)
T ss_pred ccCCEEEecCchHHHHHHHHHHhCC------CCEEEEECCHHHHHHHHh--------CCCeEEEeeCCCHHHHHhcCCcc
Confidence 4799999999999999999998764 789999999998887532 35678999999999999999999
Q ss_pred ccEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCCHHHHHHcCCCeeEEEechH-HHHHHHHHHhc
Q 005788 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHD-VIGRLMIQCAL 537 (677)
Q Consensus 461 A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~~~~l~~aGad~VevVv~~e-l~a~lLaq~a~ 537 (677)
|+++|++++ +|+.|+.++..+|+++| +.+|+||++|+++.+.++.+|+|. ++ ++. ..+..+++.+.
T Consensus 465 A~~vv~~~~------d~~~n~~i~~~~r~~~p--~~~IiaRa~~~~~~~~L~~~Ga~~--vv-~e~~es~l~l~~~~L 531 (601)
T PRK03659 465 AEAIVITCN------EPEDTMKIVELCQQHFP--HLHILARARGRVEAHELLQAGVTQ--FS-RETFSSALELGRKTL 531 (601)
T ss_pred CCEEEEEeC------CHHHHHHHHHHHHHHCC--CCeEEEEeCCHHHHHHHHhCCCCE--EE-ccHHHHHHHHHHHHH
Confidence 999999996 48999999999999998 779999999999999999999993 34 343 34555655444
No 10
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.66 E-value=7.2e-16 Score=140.26 Aligned_cols=112 Identities=21% Similarity=0.331 Sum_probs=98.9
Q ss_pred EEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccEE
Q 005788 385 ILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAI 464 (677)
Q Consensus 385 III~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~aV 464 (677)
|||||||+.|..++++|...+ ..|+++|.|++..+++.+ .++.++.||++++++|+++++++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~------~~vvvid~d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~~a~~v 66 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG------IDVVVIDRDPERVEELRE--------EGVEVIYGDATDPEVLERAGIEKADAV 66 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT------SEEEEEESSHHHHHHHHH--------TTSEEEES-TTSHHHHHHTTGGCESEE
T ss_pred eEEEcCCHHHHHHHHHHHhCC------CEEEEEECCcHHHHHHHh--------cccccccccchhhhHHhhcCccccCEE
Confidence 799999999999999999843 689999999998887654 246789999999999999999999999
Q ss_pred EEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCCHHHHHHcCCCe
Q 005788 465 IVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGEL 518 (677)
Q Consensus 465 IIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~~~~l~~aGad~ 518 (677)
|++++ +|+.|+.+++.+|+++| ..++++++.++++.+.++.+|+|.
T Consensus 67 v~~~~------~d~~n~~~~~~~r~~~~--~~~ii~~~~~~~~~~~l~~~g~d~ 112 (116)
T PF02254_consen 67 VILTD------DDEENLLIALLARELNP--DIRIIARVNDPENAELLRQAGADH 112 (116)
T ss_dssp EEESS------SHHHHHHHHHHHHHHTT--TSEEEEEESSHHHHHHHHHTT-SE
T ss_pred EEccC------CHHHHHHHHHHHHHHCC--CCeEEEEECCHHHHHHHHHCCcCE
Confidence 99996 49999999999999998 679999999999999999999994
No 11
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.64 E-value=6.9e-15 Score=170.72 Aligned_cols=133 Identities=14% Similarity=0.080 Sum_probs=112.0
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
.++|+||||+|+.|..++++|.+.+ ..++++|.|++.++...+ .+..++.||+++++.|+++|+++
T Consensus 399 ~~~~vII~G~Gr~G~~va~~L~~~g------~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~ 464 (621)
T PRK03562 399 QQPRVIIAGFGRFGQIVGRLLLSSG------VKMTVLDHDPDHIETLRK--------FGMKVFYGDATRMDLLESAGAAK 464 (621)
T ss_pred ccCcEEEEecChHHHHHHHHHHhCC------CCEEEEECCHHHHHHHHh--------cCCeEEEEeCCCHHHHHhcCCCc
Confidence 4699999999999999999998764 789999999999887633 35678999999999999999999
Q ss_pred ccEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCCHHHHHHcCCCeeEEEechHHHHHHHHHHhc
Q 005788 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCAL 537 (677)
Q Consensus 461 A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~~~~l~~aGad~VevVv~~el~a~lLaq~a~ 537 (677)
|+.+|++++ +|+.|+.++..+|+++| +.+|+||.+|+++.+.++.+|+|.+ +......+..+++.+.
T Consensus 465 A~~vvv~~~------d~~~n~~i~~~ar~~~p--~~~iiaRa~d~~~~~~L~~~Gad~v--~~e~~e~sl~l~~~~L 531 (621)
T PRK03562 465 AEVLINAID------DPQTSLQLVELVKEHFP--HLQIIARARDVDHYIRLRQAGVEKP--ERETFEGALKSGRLVL 531 (621)
T ss_pred CCEEEEEeC------CHHHHHHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHCCCCEE--ehhhHhHHHHHHHHHH
Confidence 999999996 48999999999999998 6789999999999999999999943 3222233555555544
No 12
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.95 E-value=1.7e-08 Score=98.19 Aligned_cols=143 Identities=21% Similarity=0.243 Sum_probs=117.9
Q ss_pred ceeecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC
Q 005788 378 EVIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS 457 (677)
Q Consensus 378 ~v~~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~ 457 (677)
.....+|++|||+|..+..+.+.|.... ..+++++.+++..+.... .++.++.||+++.+.|.+++
T Consensus 17 ~~~l~~~~ii~g~~~~g~~~~~~l~~~~------~~~~vi~~~~~~~~~~~~--------~~~~~~~gd~~~~~~l~~a~ 82 (212)
T COG1226 17 IVRLKRHVIIVGFGRVGQIVARALLASG------IPVVVIDSDEDRVELLRE--------LGLLVVLGDATREEVLEAAG 82 (212)
T ss_pred cccCCCCEEEEcCChHHHHHHHHHHHCC------CCEEEEECCHHHHHHHHH--------CCCcEEEecCCCHHHHHhcC
Confidence 3468999999999999999999998764 479999999877665432 35578999999999999999
Q ss_pred cccccEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCC-CCCHHHHHHcCCCeeEEEechHHHHHHHHHHh
Q 005788 458 VSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSD-LDNEPLVKLVGGELIETVVAHDVIGRLMIQCA 536 (677)
Q Consensus 458 I~~A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d-~e~~~~l~~aGad~VevVv~~el~a~lLaq~a 536 (677)
+++|+.++++.+ ++..|+.++..++.++| ...++++..+ ..+.+.+..+|++ +++.+....+..++..+
T Consensus 83 ~~~a~~vi~~~~------~~~~~~~~~~~~~~~~p--~~~i~~~~~~~~~~~~~l~~~G~~--~vi~~~~~~~~~~~~~~ 152 (212)
T COG1226 83 IERARAVIVTLS------DDATNVFIVLLARAINP--ELEILARARDLDEAVETLTTVGAD--EVVPPTFESALLLARAA 152 (212)
T ss_pred hhheeEEEEecC------CHHHHHHHHHHHHHHCC--CCEEEEEeccchHHHHHHHHcCCC--eeecHHHHHHHHHHHHH
Confidence 999999999996 48889999998999998 5569999999 6667889999998 45766667777777777
Q ss_pred cCCcHHHH
Q 005788 537 LQPGLAQI 544 (677)
Q Consensus 537 ~~Pgl~~V 544 (677)
..+.....
T Consensus 153 ~~~~~~~~ 160 (212)
T COG1226 153 LVGLGGDS 160 (212)
T ss_pred hcccCCch
Confidence 76655443
No 13
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.92 E-value=9.3e-10 Score=94.18 Aligned_cols=71 Identities=21% Similarity=0.467 Sum_probs=58.1
Q ss_pred HHHHHHHHhhhhh---ccCCCHHHHHHHHHHhhhccCCCC-ccCCCCCeEEeeeehhhhHHHHHHHHHHHHHHHH
Q 005788 296 IFLIIFGGLALYA---VSDSSFAEALWLSWTFVADSGNHA-DRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAIS 366 (677)
Q Consensus 296 l~lil~g~l~~~~---iE~~s~~dAlw~t~vTiTTvGyg~-~p~t~~gRi~~v~lil~Gi~ifa~lig~it~~i~ 366 (677)
+.++..|+..++. .|++++.||+||+++|+||+|||| .|.+..||+++++.++.|+.+++++++.+++.+.
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 4 LLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566666666 467899999999999999999997 5888899999999999999999999999988765
No 14
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=98.62 E-value=1.7e-08 Score=111.17 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhc--cC----CCHHHHHHHHHHhhhccCCCC-ccCCCCCeEEeeeehhhhHHHHHHHHHHH
Q 005788 289 LALLFATIFLIIFGGLALYAV--SD----SSFAEALWLSWTFVADSGNHA-DRVGTGPRIVSVSISSGGMLIFAMMLGLV 361 (677)
Q Consensus 289 ~~Ll~~~l~lil~g~l~~~~i--E~----~s~~dAlw~t~vTiTTvGyg~-~p~t~~gRi~~v~lil~Gi~ifa~lig~i 361 (677)
+.++++++.++++++++|+.- |+ .|.--++||+++||||+|||| .|.|+.|++++...++.|++++++-|.+|
T Consensus 347 lLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiI 426 (477)
T KOG3713|consen 347 LLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITII 426 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhH
Confidence 345566667777888877652 22 468889999999999999997 59999999999999999999999999998
Q ss_pred HHHHHHh
Q 005788 362 SDAISEK 368 (677)
Q Consensus 362 t~~i~~~ 368 (677)
.+-|...
T Consensus 427 v~nF~~~ 433 (477)
T KOG3713|consen 427 VNNFSMY 433 (477)
T ss_pred hhhHHHH
Confidence 8877665
No 15
>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]
Probab=98.40 E-value=6.5e-07 Score=86.14 Aligned_cols=99 Identities=19% Similarity=0.108 Sum_probs=72.7
Q ss_pred EechHHHHHHHHHHhcCCcHHHHHHHHhcC----CCceEEEecCCCCCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeC
Q 005788 522 VVAHDVIGRLMIQCALQPGLAQIWEDILGF----ENAEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILN 596 (677)
Q Consensus 522 Vv~~el~a~lLaq~a~~Pgl~~Vl~~Ll~~----~g~ei~i~~~p~lvGktf~el~~~~-~~aiVIGI~r~~~~G~~iln 596 (677)
+...+-.++.+++.+--+...+-++.+... ...++++...+.++|++++|+..+. .+++||||.| +++.+++
T Consensus 52 v~l~~eEa~~va~iL~~~~~~~~f~~~~~~~p~l~~~~~~i~~~s~~~GksiGdl~irq~TGaTIIAI~r---~~e~I~S 128 (162)
T COG0490 52 VSLTDEEARQVAAILGMSYKTERFEQTEPALPGLIIEWFKIEAGSPFIGKTIGDLNIRQNTGATVIAIVR---NEEKILS 128 (162)
T ss_pred eeccHHHHHHHHHHhCchhhhHHHHhhhhccccchheeeeeecCCcccCcchhhcccccccCcEEEEEEe---cCcEecC
Confidence 444455566666665533333322222111 1246788888999999999999875 5999999998 6889999
Q ss_pred CCCCceecCCCEEEEEEeCCCCCCCCC
Q 005788 597 PDDNYVLKEGDEVLVIAEDDDTYAPGP 623 (677)
Q Consensus 597 P~~d~vI~~GD~LiVIg~~~di~~~~~ 623 (677)
|.++++|++||.|+|+|+...+.++..
T Consensus 129 PgPy~vle~gDtlvviG~~~~~~r~~~ 155 (162)
T COG0490 129 PGPYTVLEAGDTLVVIGEETGLKRAKR 155 (162)
T ss_pred CCchhhhcCCCEEEEEecchHhHHHHH
Confidence 999999999999999999888876543
No 16
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.29 E-value=8.8e-07 Score=106.79 Aligned_cols=82 Identities=21% Similarity=0.271 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcc------CCCHHH-----------------HHHHHHHhhhccCCCC-ccCCCCCeE
Q 005788 286 AKLLALLFATIFLIIFGGLALYAVS------DSSFAE-----------------ALWLSWTFVADSGNHA-DRVGTGPRI 341 (677)
Q Consensus 286 ~~l~~Ll~~~l~lil~g~l~~~~iE------~~s~~d-----------------Alw~t~vTiTTvGyg~-~p~t~~gRi 341 (677)
.+++.+++++++++-..+++||++. +.+|.+ |+||+++|+||+|||+ .|.+..+++
T Consensus 200 ~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i 279 (823)
T PLN03192 200 IRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMI 279 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHH
Confidence 3455566666656666666666642 235554 6999999999999997 589999999
Q ss_pred EeeeehhhhHHHHHHHHHHHHHHHHH
Q 005788 342 VSVSISSGGMLIFAMMLGLVSDAISE 367 (677)
Q Consensus 342 ~~v~lil~Gi~ifa~lig~it~~i~~ 367 (677)
|++++|++|+++|++++|.+++.+.+
T Consensus 280 ~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 280 FIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887654
No 17
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.26 E-value=1.5e-05 Score=84.84 Aligned_cols=212 Identities=13% Similarity=0.052 Sum_probs=144.6
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc-cCcccc
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK-VSVSKA 461 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~r-A~I~~A 461 (677)
+.|+|+|-|..+..+++.+....+ .+...+++.++.+..+... ....+.+..-||++...|++ .+-+..
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~~~---~~~f~~vv~~~qe~~~~~~-------~~e~~~fh~fdaTs~~rl~~~~n~~~~ 71 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRHYS---NHNFYIVVVKNQESLIPKN-------YPETFAFHCFDATSSFRLLQVLNDEVS 71 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHHhc---CceEEEEEeechhhccccc-------CcceEEEEEeCCccHHHHHHHhhhHhh
Confidence 579999999999999988876542 2456667777765543211 12467788899999999876 677888
Q ss_pred cEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCCHHHHHHcCCCeeEEEechHHHHHHHHHHhcCCcH
Q 005788 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGL 541 (677)
Q Consensus 462 ~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~~~~l~~aGad~VevVv~~el~a~lLaq~a~~Pgl 541 (677)
+|+|+.-+ -.++..+.-++|..+++..+.|+.-....++-+..+...++ .+..++..++.....+ |++
T Consensus 72 ~Afi~~qd-------~~et~~i~k~lr~~f~n~e~ei~~~~~~l~~Nee~~d~k~~---lid~~~vL~~~F~~~L--p~I 139 (471)
T COG3400 72 DAFIIIQD-------FKETRIIHKILRTHFKNMEVEISVKRDELENNEENKDEKLI---LIDEFEVLANKFISRL--PNI 139 (471)
T ss_pred hhheehhh-------HHHHHHHHHHHHHhccCcEEEEEEEeCCCccchhhccccee---ecchHHHHHHHHHHhc--CCc
Confidence 89998874 45567777788878875444455444434444445555544 4555666665554433 233
Q ss_pred HHHHHHH-hcC-CCceEEEecCCCCCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCC
Q 005788 542 AQIWEDI-LGF-ENAEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTY 619 (677)
Q Consensus 542 ~~Vl~~L-l~~-~g~ei~i~~~p~lvGktf~el~~~~~~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg~~~di~ 619 (677)
...-..+ ++. +-.|+.+...+.++=+.++++.. ..+.+++++| +|+ .+-|..+.+|++||+|+|+|+..-+.
T Consensus 140 ~~tp~~iGLgkGEImEI~vp~gSifaYrhi~sI~q--k~~RIvl~YR---N~k-lll~~~slvlqp~D~lLVvG~P~~ln 213 (471)
T COG3400 140 PSTPREIGLGKGEIMEIDVPFGSIFAYRHIGSIRQ--KEYRIVLLYR---NDK-LLLSTKSLVLQPRDILLVVGNPEILN 213 (471)
T ss_pred cccchhcccccceEEEEecCCCchhhhhhhhhhhh--heeEEEEEEE---CCE-EEEeccceEecCCCEEEEeCChHHHH
Confidence 2221111 111 33677788888999899999875 4688999999 565 56788999999999999999988776
Q ss_pred CCC
Q 005788 620 APG 622 (677)
Q Consensus 620 ~~~ 622 (677)
.+.
T Consensus 214 ~~~ 216 (471)
T COG3400 214 AVY 216 (471)
T ss_pred HHH
Confidence 654
No 18
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=98.16 E-value=4.6e-06 Score=87.83 Aligned_cols=84 Identities=18% Similarity=0.195 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHhhhccCCCCc-c-CC------CCC-eEEeeeehhhhHHHH
Q 005788 284 PYAKLLALLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD-R-VG------TGP-RIVSVSISSGGMLIF 354 (677)
Q Consensus 284 ~~~~l~~Ll~~~l~lil~g~l~~~~iE~~s~~dAlw~t~vTiTTvGyg~~-p-~t------~~g-Ri~~v~lil~Gi~if 354 (677)
.+-.++.+..+.++++..|+..|..+|+||++||+|+.++|+||+||||. + +. .+. +++.++.+++|+.++
T Consensus 157 ~~~l~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi 236 (350)
T KOG4404|consen 157 VYNLVLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVI 236 (350)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHH
Confidence 34445556677777888899999999999999999999999999999974 2 22 122 456888999999999
Q ss_pred HHHHHHHHHHHHH
Q 005788 355 AMMLGLVSDAISE 367 (677)
Q Consensus 355 a~lig~it~~i~~ 367 (677)
+.++.+++-.+..
T Consensus 237 ~a~~NllvLrf~t 249 (350)
T KOG4404|consen 237 YALLNLLVLRFMT 249 (350)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877654443
No 19
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=98.14 E-value=1.1e-06 Score=73.05 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=47.9
Q ss_pred eEEEecCCCCCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 005788 555 EFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (677)
Q Consensus 555 ei~i~~~p~lvGktf~el~~~~-~~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg~~~di~~~ 621 (677)
|+.+.+.++++|++++|+.... .++.++||.| + +..+.|.++++|++||.|+++|+.+++.++
T Consensus 3 e~~V~~~s~~~gk~l~el~l~~~~~~~i~~i~R---~-~~~~~p~~~~~l~~gD~l~v~g~~~~i~~~ 66 (71)
T PF02080_consen 3 EVRVPENSPLVGKTLKELDLPERYGVRIVAIKR---G-GEIIIPDGDTVLQAGDILIVVGDPEDIERF 66 (71)
T ss_dssp EEE--TTBTTTTEBHHHCTHHCHHTEEEEEEEE---T-EEEES--TT-BE-TTEEEEEEEEHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHCCCCccCCEEEEEEEE---C-CEEECCCCCCEECCCCEEEEEECHHHHHHH
Confidence 5677778899999999976543 3899999988 3 678999999999999999999998876554
No 20
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.12 E-value=1e-07 Score=100.89 Aligned_cols=72 Identities=24% Similarity=0.370 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhhhhccC------CCHHHHHHHHHHhhhccCCCC-ccCCCCCeEEeeeehhhhHHHHHHHHHHHHHHH
Q 005788 294 ATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHA-DRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAI 365 (677)
Q Consensus 294 ~~l~lil~g~l~~~~iE~------~s~~dAlw~t~vTiTTvGyg~-~p~t~~gRi~~v~lil~Gi~ifa~lig~it~~i 365 (677)
+.+.+|++++..|+.-.+ .|.-|||||+++|+||+|||| .|.+.+|++++-+..+.|++.++.-+.+|++-+
T Consensus 368 lfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNF 446 (507)
T KOG1545|consen 368 LFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNF 446 (507)
T ss_pred HHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecc
Confidence 344556666665544222 479999999999999999997 599999999999999999998888777766543
No 21
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.12 E-value=7.5e-07 Score=98.95 Aligned_cols=57 Identities=21% Similarity=0.335 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHhhhccCCCC-ccCCCCCeEEeeeehhhhHHHHHHHHHHHHHHHHHh
Q 005788 312 SSFAEALWLSWTFVADSGNHA-DRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (677)
Q Consensus 312 ~s~~dAlw~t~vTiTTvGyg~-~p~t~~gRi~~v~lil~Gi~ifa~lig~it~~i~~~ 368 (677)
.|+.||+||.++|+||+|||| .|.|+.||+++..+.++|+-+|+.--|++...|.-+
T Consensus 268 ~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALK 325 (654)
T KOG1419|consen 268 PTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALK 325 (654)
T ss_pred hhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhh
Confidence 479999999999999999998 599999999999999999999998877776554433
No 22
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.51 E-value=0.00013 Score=79.13 Aligned_cols=76 Identities=22% Similarity=0.184 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHhhhccCCCCc---cCCCCCeEEeeeehhhhHHHHHHHHHHHHHHHHHhhhhhccCccceeecCeEEEE
Q 005788 312 SSFAEALWLSWTFVADSGNHAD---RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILIL 388 (677)
Q Consensus 312 ~s~~dAlw~t~vTiTTvGyg~~---p~t~~gRi~~v~lil~Gi~ifa~lig~it~~i~~~i~~lr~G~~~v~~knHIII~ 388 (677)
.+|.+|||+++.|.||+|||.. |....+.++..+-.++|+++.++++|++..-+.. =+++...+...++.||+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr----P~~R~~tI~FS~~AVI~ 158 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR----PKKRASTILFSKKAVIA 158 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----CCCGGGSEEE-SSEEEE
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cccccceEEEEeeeEEe
Confidence 4899999999999999999863 3444566666677788999999999987665443 22222345678888887
Q ss_pred ecc
Q 005788 389 GWS 391 (677)
Q Consensus 389 G~g 391 (677)
-.+
T Consensus 159 ~~d 161 (336)
T PF01007_consen 159 PRD 161 (336)
T ss_dssp EET
T ss_pred ecC
Confidence 553
No 23
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=97.35 E-value=1.5e-05 Score=85.28 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhhhhhccC------CCHHHHHHHHHHhhhccCCCC-ccCCCCCeEEeeeehhhhHHHHHHHHHHHHH
Q 005788 291 LLFATIFLIIFGGLALYAVSD------SSFAEALWLSWTFVADSGNHA-DRVGTGPRIVSVSISSGGMLIFAMMLGLVSD 363 (677)
Q Consensus 291 Ll~~~l~lil~g~l~~~~iE~------~s~~dAlw~t~vTiTTvGyg~-~p~t~~gRi~~v~lil~Gi~ifa~lig~it~ 363 (677)
++.++.++|+++++.||.-.+ .++-.|||++++|+||.|||+ .|.+..|++|+-+..+.|+++++.-+.+++.
T Consensus 328 lFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVS 407 (632)
T KOG4390|consen 328 LFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVS 407 (632)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEe
Confidence 455566778888887765433 468899999999999999997 4888899999999999999998887777765
Q ss_pred HHHH
Q 005788 364 AISE 367 (677)
Q Consensus 364 ~i~~ 367 (677)
-+..
T Consensus 408 NFSR 411 (632)
T KOG4390|consen 408 NFSR 411 (632)
T ss_pred chhH
Confidence 5443
No 24
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.0078 Score=66.65 Aligned_cols=167 Identities=14% Similarity=0.110 Sum_probs=95.4
Q ss_pred hccccccCCCCCceeeeccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh--hccccccccCCCCccch
Q 005788 194 FCSYKSIAGNNGIDVLHTDNNSDSNFGNADGRTVALYSVIVTLLMPFVLYKYLDYLPQIKN--FSKRTKKNKEEVPLKKR 271 (677)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~k~~~~l~~r 271 (677)
.|.+...++-+....+....-.+++..+...--+...+.+. .++++++.-.+..+.-++. ..-++..+--++.++-|
T Consensus 164 vC~i~P~P~~g~~~~~~~~~~~~~~~~~~~~~~vdV~LSip-MfLRlyLv~R~MlLhSk~f~DastRSIaaLNrI~fn~r 242 (489)
T KOG3684|consen 164 VCAICPIPETGEYKWTWLAPLAFSYTPSRVDVPVDVLLSIP-MFLRLYLVCRVMLLHSKQFQDASTRSIAALNRINFNFR 242 (489)
T ss_pred HhccCCCCCCCceeeEeccchhhccCCCcccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchhhhh
Confidence 47777777666665544222222222222222222222221 2233333333334444333 12223333334444455
Q ss_pred hhhheeeccccchHHHHHHHHHHHHHHHHHHHhhhhhcc--C------CCHHHHHHHHHHhhhccCCCC-ccCCCCCeEE
Q 005788 272 VAYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAVS--D------SSFAEALWLSWTFVADSGNHA-DRVGTGPRIV 342 (677)
Q Consensus 272 l~Y~ld~~~s~~~~~~l~~Ll~~~l~lil~g~l~~~~iE--~------~s~~dAlw~t~vTiTTvGyg~-~p~t~~gRi~ 342 (677)
+.-+. .|...|..- |+++++.+.++.++.+..-| + .++.++.|+...|+-++|||| .|.++.||.+
T Consensus 243 FV~Kt--~M~~~Pg~v---L~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v 317 (489)
T KOG3684|consen 243 FVLKT--LMTICPGTV---LLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGV 317 (489)
T ss_pred hhHHH--HHHhCchHH---HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchH
Confidence 55444 554445433 24455555566666665544 2 349999999999999999997 5999999999
Q ss_pred eeeehhhhHHHHHHHHHHHHHHHH
Q 005788 343 SVSISSGGMLIFAMMLGLVSDAIS 366 (677)
Q Consensus 343 ~v~lil~Gi~ifa~lig~it~~i~ 366 (677)
+++.-++|.++.++++++++-.++
T Consensus 318 ~l~tGivGa~~sallvAvisRKLe 341 (489)
T KOG3684|consen 318 ALLTGIVGAGCSSLLVAVIARKLE 341 (489)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHH
Confidence 999888998888888888765443
No 25
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.19 E-value=0.0077 Score=67.80 Aligned_cols=231 Identities=17% Similarity=0.242 Sum_probs=133.0
Q ss_pred ecCeEEEEeccchHHHHH--H----HHHHhccc-CCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHH
Q 005788 381 EKNHILILGWSDKLGSLL--K----QLAVANKS-IGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADL 453 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll--~----eL~~~~~s-~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L 453 (677)
+.+|+|+|=+++.-..++ + -|+..|-. +.-.|+|++-+- +-+++.-+.++ . -..+.+..|+|.+..+|
T Consensus 732 lnghvvvclfad~dspliglrnlvmplrasnfhyhelkhvvivgsi--eylrrewktl~-n--lpkisilngsplsradl 806 (1103)
T KOG1420|consen 732 LNGHVVVCLFADVDSPLIGLRNLVMPLRASNFHYHELKHVVIVGSI--EYLRREWKTLH-N--LPKISILNGSPLSRADL 806 (1103)
T ss_pred ecCcEEEEEecCCCCchhhhhhheeeccccccchhheeeEEEEccH--HHHHHHHHHHh-C--CCceeecCCCCCchhhh
Confidence 689999999988644433 2 23322211 122355555432 22222222221 1 24688899999999999
Q ss_pred hccCcccccEEEEecCC----CCCccchHHHHHHHHHHhhhcC----------------------------------CCC
Q 005788 454 KKVSVSKARAIIVLASD----ENADQSDARALRVVLSLTGVKE----------------------------------GLR 495 (677)
Q Consensus 454 ~rA~I~~A~aVIIltdd----~~~~~sDa~NI~i~Lsar~l~p----------------------------------~l~ 495 (677)
+.+++.-+|.+++++.+ .+..-.|.+.|++.|.+|.+.= |.+
T Consensus 807 ravninlcdmcvilsa~vpn~ddttladkeailaslnikamqfddtigvl~~r~q~fd~~ssp~gspi~lq~~g~~~g~n 886 (1103)
T KOG1420|consen 807 RAVNINLCDMCVILSANVPNIDDTTLADKEAILASLNIKAMQFDDTIGVLQARSQGFDPPSSPDGSPIHLQQPGITTGVN 886 (1103)
T ss_pred hhccccccceeEEEecCCCCCCCcccccHHHHHhhccceeeeeccceeeeeccCCCCCCCCCCCCCCeEEecCCcccccC
Confidence 99999999999999876 2344578888888888775421 233
Q ss_pred ceEEEEeCCCCCHHHHHHcCCC--eeEEEech----------HHHHHHHHHHhcCCcHHHHHHHHhcC-----------C
Q 005788 496 GHVVVEMSDLDNEPLVKLVGGE--LIETVVAH----------DVIGRLMIQCALQPGLAQIWEDILGF-----------E 552 (677)
Q Consensus 496 ~~IIArv~d~e~~~~l~~aGad--~VevVv~~----------el~a~lLaq~a~~Pgl~~Vl~~Ll~~-----------~ 552 (677)
+++|.|+.+..|.+.+.+-..| ..|..... .+...+|...-.+-.+.+++..|... +
T Consensus 887 vpmitelvndsnvqfldqdddddpdtelyltqpfacgtafavsvldslmsttyfndnaltlirtlvtggatpelelilae 966 (1103)
T KOG1420|consen 887 VPMITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSTTYFNDNALTLIRTLVTGGATPELELILAE 966 (1103)
T ss_pred chhhhhhhccccceecccCCCCCCCceeEecCccccchhhHHHHHHHHhhhceecchHHHHHHHHHhCCCChhhHHHHhc
Confidence 4566666666666555432221 01111111 11123333333333333333333321 1
Q ss_pred C---------------------ceEEEecCC--C-CCCCcHHhHhhh---CCCeEEEEEEEeec---------CCeEEeC
Q 005788 553 N---------------------AEFYIKRWP--Q-LDDLRFEEVVIS---FPDAIPCGIKVAAE---------GGKIILN 596 (677)
Q Consensus 553 g---------------------~ei~i~~~p--~-lvGktf~el~~~---~~~aiVIGI~r~~~---------~G~~iln 596 (677)
| .++.+...| . -.|-+++|+.-. -.+.+-+|++|-++ ..-++.|
T Consensus 967 gaglrggystpetlsnrdrcrvaqisl~dgp~a~~g~~g~ygdlf~~alk~ygmlciglyrlrd~~~s~~~s~kryvitn 1046 (1103)
T KOG1420|consen 967 GAGLRGGYSTPETLSNRDRCRVAQISLLDGPFADLGDGGCYGDLFCKALKTYGMLCIGLYRLRDAHLSTSQSTKRYVITN 1046 (1103)
T ss_pred cccccCCCCChhhhccccceeeeeeeeecCchhhhccCCchHHHHHHHHHHhCceeEEEeeeeccccCcchhhceeEecC
Confidence 1 123333333 2 256778886543 24889999997321 1347889
Q ss_pred CCCCceecCCCEEEEEEeCC
Q 005788 597 PDDNYVLKEGDEVLVIAEDD 616 (677)
Q Consensus 597 P~~d~vI~~GD~LiVIg~~~ 616 (677)
|+.+..|.+.|.++|+-.-+
T Consensus 1047 pp~ef~l~ptd~vfvlmqfd 1066 (1103)
T KOG1420|consen 1047 PPYEFELVPTDLVFVLMQFD 1066 (1103)
T ss_pred CchhheecccceEEEEEeeC
Confidence 99999999999999987644
No 26
>COG3273 Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.00029 Score=69.21 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=56.5
Q ss_pred eEEEecCCCCCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCCCC
Q 005788 555 EFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPGP 623 (677)
Q Consensus 555 ei~i~~~p~lvGktf~el~~~~-~~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg~~~di~~~~~ 623 (677)
.+.+.+.|.++|+|++|+...- .++-||+|+| ++..+++|+.++.|.+||.|++-|++.....+++
T Consensus 122 rv~v~~~S~l~gktLg~l~L~t~tGvrVIAIRR---G~~wi~~Pd~~~~Ir~gDvLIarG~~~g~~~l~e 188 (204)
T COG3273 122 RVRVEKGSELAGKTLGELDLATNTGVRVIAIRR---GERWIYGPDEDTKIREGDVLIARGTDAGVELLKE 188 (204)
T ss_pred EEEecCCCeecccchhhhccccccceEEEEEec---CCccccCCCccceeccCCEEEEecchhhHHHHHH
Confidence 4566778899999999998653 4899999998 5668999999999999999999998888877764
No 27
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.00032 Score=76.68 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHhhhccCCCC-ccCCCCCeEEeeeehhhhHHHHHHHHHHHHHHHHHhhhhhc
Q 005788 311 DSSFAEALWLSWTFVADSGNHA-DRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLR 373 (677)
Q Consensus 311 ~~s~~dAlw~t~vTiTTvGyg~-~p~t~~gRi~~v~lil~Gi~ifa~lig~it~~i~~~i~~lr 373 (677)
.|+|.+|+|++++++||+|||. .|.+..||+++++..++|+-++.++++-+...+.+.+..+.
T Consensus 113 ~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~ 176 (433)
T KOG1418|consen 113 QWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLY 176 (433)
T ss_pred ceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999985 69999999999999999999998888888777777654443
No 28
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.95 E-value=0.0036 Score=60.86 Aligned_cols=83 Identities=11% Similarity=0.070 Sum_probs=60.3
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
...+++|+|+|+.+...++.|...+ ..|++++.+. .+++ .++ + .+.+ +.+.++.+++++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~g------a~V~VIsp~~--~~~l-~~l-----~-~i~~------~~~~~~~~dl~~ 70 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTG------AFVTVVSPEI--CKEM-KEL-----P-YITW------KQKTFSNDDIKD 70 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC------CEEEEEcCcc--CHHH-Hhc-----c-CcEE------EecccChhcCCC
Confidence 4678999999999999999998764 5677775332 2222 111 1 1222 356778888999
Q ss_pred ccEEEEecCCCCCccchHHHHHHHHHHhhh
Q 005788 461 ARAIIVLASDENADQSDARALRVVLSLTGV 490 (677)
Q Consensus 461 A~aVIIltdd~~~~~sDa~NI~i~Lsar~l 490 (677)
|+.||+.|+ +|+.|..++..+++.
T Consensus 71 a~lViaaT~------d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 71 AHLIYAATN------QHAVNMMVKQAAHDF 94 (157)
T ss_pred ceEEEECCC------CHHHHHHHHHHHHHC
Confidence 999999996 489999999888864
No 29
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.95 E-value=0.00037 Score=81.94 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhhccCCCCc-cCCCCCeEEeeeehhhhHHHHHHHHHHHHHHHHHh
Q 005788 314 FAEALWLSWTFVADSGNHAD-RVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (677)
Q Consensus 314 ~~dAlw~t~vTiTTvGyg~~-p~t~~gRi~~v~lil~Gi~ifa~lig~it~~i~~~ 368 (677)
+.-|+||++.|+||+|||+. +.+....+|++++|++|+++|+++||-++..++..
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ 350 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSL 350 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence 45699999999999999975 57778899999999999999999999998877664
No 30
>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit; the pore-forming (alpha) subunits and smaller accessory (beta) subunits. The alpha subunit of the BK channel was initially thought to share the characteristic 6TM organisation of the voltage-gated K+ channels. However, the molecule is now thought to possess an additional TM domain, with an extracellular N terminus and intracellular C terminus. This C-terminal region contains 4 predominantly hydrophobic domains, which are also thought to lie intracellularly. The extracellular N terminus and the first TM region are required for modulation by the beta subunit. The precise location of the Ca2+-binding site that modulates channel activation remains unknown, but it is thought to lie within the C-terminal hydrophobic domains.; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 3NAF_A 3MT5_A 3U6N_E.
Probab=96.87 E-value=0.0027 Score=57.27 Aligned_cols=69 Identities=17% Similarity=0.319 Sum_probs=52.8
Q ss_pred CCCeeEEEechHHHHHHHHHHhcCCcHHHHHHHHhcCC--------------------CceEEEecCC-CCCCCcHHhHh
Q 005788 515 GGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFE--------------------NAEFYIKRWP-QLDDLRFEEVV 573 (677)
Q Consensus 515 Gad~VevVv~~el~a~lLaq~a~~Pgl~~Vl~~Ll~~~--------------------g~ei~i~~~p-~lvGktf~el~ 573 (677)
++| ++|+.+++...+||+++..||+++++.+|+... ++|+|....| .+.|++|.++.
T Consensus 9 ~~d--~vIc~~elK~~lLA~sc~~PG~sTLi~NL~~s~~~~~~~~~~~~W~~eY~~G~~~eIy~~~l~~~f~G~~F~~~~ 86 (101)
T PF03493_consen 9 FAD--QVICIEELKLGLLAQSCLCPGFSTLITNLFHSSSGDESQEEPEQWISEYLRGAGNEIYTVKLSSAFVGMTFTEAA 86 (101)
T ss_dssp TT---EEEEHHHHHHHHHHHHHHSTTHHHHHHHTTS-------SS--SSHHHHHHHHHTBEEEEEE--GGGTTSBHHHHH
T ss_pred cCc--eEEEHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCccccccccHHHHHHHHcCCCCEEEEEeCChhhCCCcHHHHH
Confidence 456 568989999999999999999999999998641 2578877764 79999999988
Q ss_pred hh-C--CCeEEEEEE
Q 005788 574 IS-F--PDAIPCGIK 585 (677)
Q Consensus 574 ~~-~--~~aiVIGI~ 585 (677)
.. + .+++++||+
T Consensus 87 ~~~~~~~~viLigIe 101 (101)
T PF03493_consen 87 RLLYEKFGVILIGIE 101 (101)
T ss_dssp HHHHHHS--EEEEEE
T ss_pred HHHHHHcCcEEEEeC
Confidence 75 3 389999984
No 31
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.00054 Score=72.59 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=71.5
Q ss_pred cchhhHHHHHHHHH-HHHHHHHHHHhhhhhhhhh--hc-cccccccCCCCccchhhhheeeccccchHHHHHHHHHHHHH
Q 005788 222 ADGRTVALYSVIVT-LLMPFVLYKYLDYLPQIKN--FS-KRTKKNKEEVPLKKRVAYSVDVCFSVYPYAKLLALLFATIF 297 (677)
Q Consensus 222 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~l-~~~~~~k~~~~l~~rl~Y~ld~~~s~~~~~~l~~Ll~~~l~ 297 (677)
.+.|.++|++..|+ |++++.+|-++.-=.+.++ .+ .+..+-+.++. ++..-++.+...+
T Consensus 5 qnvR~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn------------~s~~d~r~~er~i----- 67 (350)
T KOG4404|consen 5 QNVRTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYN------------LSEEDYRELERVI----- 67 (350)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhC------------CCHHHHHHHHHHH-----
Confidence 34789999999999 9999998876543333221 01 11111111222 2323333221100
Q ss_pred HHHHHHhhhhhccCCCHHHHHHHHHHhhhccCCC-CccCCCCCeEEeeeehhhhHHHHHHHHHHH
Q 005788 298 LIIFGGLALYAVSDSSFAEALWLSWTFVADSGNH-ADRVGTGPRIVSVSISSGGMLIFAMMLGLV 361 (677)
Q Consensus 298 lil~g~l~~~~iE~~s~~dAlw~t~vTiTTvGyg-~~p~t~~gRi~~v~lil~Gi~ifa~lig~i 361 (677)
.-+.-=-.-..|.|.-||||+.+.+||+||| ..|.|.+||+|.++..++|+-+--.++..+
T Consensus 68 ---~~s~ph~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~ 129 (350)
T KOG4404|consen 68 ---LKSEPHKAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSI 129 (350)
T ss_pred ---HhcCccccccccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHH
Confidence 0000001112489999999999999999997 568999999999998888865543333333
No 32
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=96.32 E-value=0.00038 Score=76.09 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhhhhccCCCHHHHHHHHHHhhhccCCCCc-cCCCCCeE--------EeeeehhhhHHHHHHHH
Q 005788 293 FATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHAD-RVGTGPRI--------VSVSISSGGMLIFAMML 358 (677)
Q Consensus 293 ~~~l~lil~g~l~~~~iE~~s~~dAlw~t~vTiTTvGyg~~-p~t~~gRi--------~~v~lil~Gi~ifa~li 358 (677)
.++++.+.+|+.++...|+++|++|+|++++++||+|||+. |.+..++. +..+++++|+..++...
T Consensus 222 ~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 222 GISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 33344455677888888999999999999999999999975 76666653 44456666766666555
No 33
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.0051 Score=69.42 Aligned_cols=55 Identities=20% Similarity=0.357 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhhccCCC-CccCCCCCeEEeeeehhhhHHHHHHHHHHHHHHHHHh
Q 005788 314 FAEALWLSWTFVADSGNH-ADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (677)
Q Consensus 314 ~~dAlw~t~vTiTTvGyg-~~p~t~~gRi~~v~lil~Gi~ifa~lig~it~~i~~~ 368 (677)
+..++||+++.+||+||| +.|.+...++|++.+|+.|-++.+.++|-++..|++.
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM 479 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQM 479 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 678999999999999998 4588889999999999999999999999887766543
No 34
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.90 E-value=0.0041 Score=70.41 Aligned_cols=96 Identities=9% Similarity=0.163 Sum_probs=75.7
Q ss_pred hhheeeccccchHHHHHHHHHHHHHHHHHHHhhhhhcc---------------CCCHHHHHHHHHHhhhccCCCCccCCC
Q 005788 273 AYSVDVCFSVYPYAKLLALLFATIFLIIFGGLALYAVS---------------DSSFAEALWLSWTFVADSGNHADRVGT 337 (677)
Q Consensus 273 ~Y~ld~~~s~~~~~~l~~Ll~~~l~lil~g~l~~~~iE---------------~~s~~dAlw~t~vTiTTvGyg~~p~t~ 337 (677)
.-++|+.|+..-+.+++.-+.-++.++=+-+++||+.. |..+.-++||++-|++|+|..-.|.+.
T Consensus 348 ~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa~kt~~tiG~~P~P~~~ 427 (815)
T KOG0499|consen 348 NHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFAVKTLITIGGLPEPQTL 427 (815)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceeeehhhHHHHHHHhcCCCCcchH
Confidence 35677777766666666666666666677888888742 457899999999999999998888887
Q ss_pred CCeEEeeeehhhhHHHHHHHHHHHHHHHHHh
Q 005788 338 GPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (677)
Q Consensus 338 ~gRi~~v~lil~Gi~ifa~lig~it~~i~~~ 368 (677)
...+|..+--+.|+++|+.+||.+=+.+...
T Consensus 428 ~E~Vf~~~~w~mGVFvFslliGQmRDvi~aA 458 (815)
T KOG0499|consen 428 FEIVFQLLNWFMGVFVFSLLIGQMRDVIGAA 458 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7888877777899999999999987776553
No 35
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=95.73 E-value=0.031 Score=62.82 Aligned_cols=112 Identities=19% Similarity=0.289 Sum_probs=74.5
Q ss_pred ccEEEEEeCCCCHHHHhccCcccccEEEEecCCC---CCccchHHHHHHHHHHhhhcCCCCceEEEEeCC----------
Q 005788 438 TSVICRSGSPLILADLKKVSVSKARAIIVLASDE---NADQSDARALRVVLSLTGVKEGLRGHVVVEMSD---------- 504 (677)
Q Consensus 438 ~~V~~I~Gd~~~~e~L~rA~I~~A~aVIIltdd~---~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d---------- 504 (677)
.+|+...|.....++|.|||+..|..|+++-+-. +++.+|-.+|.++--+.++.| ..+.|.++..
T Consensus 762 p~vywm~g~v~~ld~llragvs~ae~vvvvke~a~~aee~tadcntii~vq~~~r~fp--~lr~itelt~atnmrf~qf~ 839 (1087)
T KOG3193|consen 762 PDVYWMKGKVGNLDCLLRAGVSSAEHVVVVKETAVMAEEHTADCNTIITVQKIHRMFP--RLRMITELTHATNMRFVQFN 839 (1087)
T ss_pred chhhhhhcCcCcHHHHHHhcccccceEEEEehhhhhhhhhccccchhhhHHHHHHhch--hHHHHHHHhhhccceEEeec
Confidence 4788899999999999999999999999984432 344567667777666666666 2233333322
Q ss_pred CCCHHHH---------HHcCCCee----------EEEechHHHHHHHHHHhcCCcHHHHHHHHhcCC
Q 005788 505 LDNEPLV---------KLVGGELI----------ETVVAHDVIGRLMIQCALQPGLAQIWEDILGFE 552 (677)
Q Consensus 505 ~e~~~~l---------~~aGad~V----------evVv~~el~a~lLaq~a~~Pgl~~Vl~~Ll~~~ 552 (677)
+.++-.+ ++-|. ++ --|-+..+..+++.|+...|-+.++..-|++-+
T Consensus 840 ~h~~ysl~~sr~ekker~rgs-h~~~mfrlpfa~g~vfsa~mld~llyqa~ik~~vv~~vrlllgid 905 (1087)
T KOG3193|consen 840 PHNAYSLAQSRFEKKERKRGS-HMPFMFRLPFAQGGVFSANMLDRLLYQAIIKPFVVDLVRLLLGID 905 (1087)
T ss_pred CcchhHHHHHHHHHHHhhccC-CCceEEeccccccceeeHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 2221111 11121 11 014456677899999999999999999888753
No 36
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.66 E-value=0.045 Score=55.43 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=57.4
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~-e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~ 459 (677)
...+++|+|.|+.+...++.|...+ ..|++++.+. +++.+... ...+.+.. ..++.+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~g------a~V~VIs~~~~~~l~~l~~-------~~~i~~~~------~~~~~~~l~ 69 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYG------AHIVVISPELTENLVKLVE-------EGKIRWKQ------KEFEPSDIV 69 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC------CeEEEEcCCCCHHHHHHHh-------CCCEEEEe------cCCChhhcC
Confidence 4679999999999999999999864 5677776553 33444332 11343322 345567788
Q ss_pred cccEEEEecCCCCCccchHHHHHHHHHHh
Q 005788 460 KARAIIVLASDENADQSDARALRVVLSLT 488 (677)
Q Consensus 460 ~A~aVIIltdd~~~~~sDa~NI~i~Lsar 488 (677)
.|+.||+.|+ +++.|..++..++
T Consensus 70 ~adlViaaT~------d~elN~~i~~~a~ 92 (202)
T PRK06718 70 DAFLVIAATN------DPRVNEQVKEDLP 92 (202)
T ss_pred CceEEEEcCC------CHHHHHHHHHHHH
Confidence 9999999996 4888887766664
No 37
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=95.57 E-value=0.013 Score=68.02 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=53.0
Q ss_pred ceEEEecCCCCCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 005788 554 AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (677)
Q Consensus 554 ~ei~i~~~p~lvGktf~el~~~~-~~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg~~~di~~~ 621 (677)
..+.+.+.++++|+++.|+..+. .++.+++++| +|+. +.|.+|++|++||+|++.|+.+++.++
T Consensus 220 r~~~V~~~s~liGkTl~el~~~~~~~v~I~~I~R---~g~~-~~p~~dtvL~~GD~L~V~G~~e~L~~l 284 (562)
T TIGR03802 220 RAYRVNRASSLIGKTVGDLENLFAGRVTIERIRR---DGKL-LTVSPDLVLNAGDVVLVVGRRDAVVQF 284 (562)
T ss_pred EEEEECCCcccCCCcHHHHHhhhCCCeEEEEEEE---CCEE-EcCCCCCeeCCCCEEEEEECHHHHHHH
Confidence 35566667789999999998775 4899999988 5665 469999999999999999999877654
No 38
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.53 E-value=0.013 Score=68.19 Aligned_cols=63 Identities=25% Similarity=0.279 Sum_probs=52.4
Q ss_pred eEEEecCCCCCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCCC
Q 005788 555 EFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPG 622 (677)
Q Consensus 555 ei~i~~~p~lvGktf~el~~~~~~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg~~~di~~~~ 622 (677)
++.+.+.++++|++++|+.. ..++.++++.| +|+ .+.|+++++|++||+++++++.+++.++.
T Consensus 418 ~~~V~~~s~~~G~~l~el~l-p~~~~i~~v~R---~g~-~~~p~~~t~L~~GD~l~l~~~~~~l~~l~ 480 (562)
T PRK05326 418 EYRVPAGSWLVGKALRDLRL-PRGALIALIIR---DGK-LLVPTGSTRLKAGDVLLVLGPERDLPALE 480 (562)
T ss_pred EEEECCCCcccCCCHHHcCC-CCCcEEEEEEE---CCE-EeCCCCCCeECCCCEEEEEECHHHHHHHH
Confidence 45566678999999999963 24899999998 565 57999999999999999999988876654
No 39
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.81 E-value=0.041 Score=61.57 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhcc-------C-CC--------------------HHHHHHHHHHhhhccCCCCcc
Q 005788 283 YPYAKLLALLFATIFLIIFGGLALYAVS-------D-SS--------------------FAEALWLSWTFVADSGNHADR 334 (677)
Q Consensus 283 ~~~~~l~~Ll~~~l~lil~g~l~~~~iE-------~-~s--------------------~~dAlw~t~vTiTTvGyg~~p 334 (677)
+...++..++..+++++=--+++|+++. + |. +.-++||+..|+||.|-.-.|
T Consensus 125 Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiGe~P~P 204 (536)
T KOG0500|consen 125 PNAFRISKLVHYCLILFHWNACLYFLISKAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIGEQPPP 204 (536)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHhhhHhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhccCCCCC
Confidence 4444555556555555555677777652 1 11 345899999999999988888
Q ss_pred CCCCCeEEeeeehhhhHHHHHHHHHHHHHHHHHh
Q 005788 335 VGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (677)
Q Consensus 335 ~t~~gRi~~v~lil~Gi~ifa~lig~it~~i~~~ 368 (677)
.+....+|.++=.+.|+++||.++|-+-+++.+.
T Consensus 205 ~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm 238 (536)
T KOG0500|consen 205 VTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM 238 (536)
T ss_pred CcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence 8889999999999999999999999877666554
No 40
>PRK04972 putative transporter; Provisional
Probab=94.57 E-value=0.034 Score=64.65 Aligned_cols=65 Identities=17% Similarity=0.145 Sum_probs=53.0
Q ss_pred ceEEEecCCCCCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCCC
Q 005788 554 AEFYIKRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPG 622 (677)
Q Consensus 554 ~ei~i~~~p~lvGktf~el~~~~~~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg~~~di~~~~ 622 (677)
.|..+.+.++++|++++|+..+..++.+++|+| ++ ..+.|.++++|+.||.|.+.|+.+++.+..
T Consensus 304 ~E~vVv~~s~liGkTL~eL~~r~~gv~Vl~I~R---~g-~~~~~~~~~~L~~GD~LlVvG~~~~i~~l~ 368 (558)
T PRK04972 304 TEEIVVKNHNAVGKRLSQLKLTDHGCFLNRVIR---SQ-IEMPIDDNVVLNKGDVLQVSGDARRVKTIA 368 (558)
T ss_pred EEEEEEcCcccCCCCHHHhCCccCCeEEEEEec---CC-cccCCCCCCEecCCCEEEEEECHHHHHHHH
Confidence 345566678999999999986546899999998 23 456677899999999999999998877654
No 41
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=94.38 E-value=0.045 Score=63.73 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=53.4
Q ss_pred ceEEEecCCCCCCCcHHhHhhh-----CCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCCC
Q 005788 554 AEFYIKRWPQLDDLRFEEVVIS-----FPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPG 622 (677)
Q Consensus 554 ~ei~i~~~p~lvGktf~el~~~-----~~~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg~~~di~~~~ 622 (677)
.|..+.+.++++|+|++|+..+ ..++.+.+|+| +|+. +.|.+|++|+.||+|.+.|+.+++.+..
T Consensus 304 ~e~VV~~~S~liGkTL~eL~~r~~~~~~~Gv~Vl~I~R---~g~~-i~~~~d~~L~~GD~LlV~G~~~~l~~~~ 373 (562)
T TIGR03802 304 TKDVVLTNKEYNGKTVAEILKNAQQFMRHGVYVEKIKR---DDQP-LPILPETVLQRGDVVTLVGTPQDVDRAA 373 (562)
T ss_pred EEEEEECCcccCCccHHHHhccccccccCCeEEEEEee---CCcc-ccCCCCCEecCCCEEEEEeCHHHHHHHH
Confidence 4445566789999999999854 35899999998 3443 4789999999999999999999887754
No 42
>PRK03818 putative transporter; Validated
Probab=94.12 E-value=0.058 Score=62.71 Aligned_cols=63 Identities=16% Similarity=0.300 Sum_probs=52.3
Q ss_pred ceEEEecCCCCCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 005788 554 AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (677)
Q Consensus 554 ~ei~i~~~p~lvGktf~el~~~~-~~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg~~~di~~~ 621 (677)
.++.+. .++++|+++.|+..+. .++.+.+++| +| ....|.+|++|++||+|++.|+.+++.++
T Consensus 207 r~~~V~-~s~liGkTv~el~~~~~~~v~V~~I~R---~g-~~~~p~~~~~L~~GDiLlV~G~~e~l~~l 270 (552)
T PRK03818 207 INIRVE-NPNLHGKAIKDVPILNGDKFVCSRLKR---GD-TLMVPSPDTIIQLGDLLHLVGQPEDLHKA 270 (552)
T ss_pred EEEEEe-CCCCCCCcHHHHHhhhCCCEEEEEEEE---CC-EEECCCCCCccCCCCEEEEEECHHHHHHH
Confidence 456666 7789999999998775 4899999988 45 46788999999999999999998876554
No 43
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.11 E-value=0.39 Score=48.81 Aligned_cols=85 Identities=14% Similarity=0.064 Sum_probs=60.5
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~-e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
..+++|+|.|+.+..-++.|...+ ..|+|++.+. ++++++.+ ..++.++.|+.. .++| +.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~g------a~VtVvsp~~~~~l~~l~~-------~~~i~~~~~~~~-~~dl-----~~ 69 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAG------AQLRVIAEELESELTLLAE-------QGGITWLARCFD-ADIL-----EG 69 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC------CEEEEEcCCCCHHHHHHHH-------cCCEEEEeCCCC-HHHh-----CC
Confidence 468999999999999999998764 4666666543 34444332 126888888876 4454 56
Q ss_pred ccEEEEecCCCCCccchHHHHHHHHHHhhhc
Q 005788 461 ARAIIVLASDENADQSDARALRVVLSLTGVK 491 (677)
Q Consensus 461 A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~ 491 (677)
|+.||+.+++ .+.|..++..++..+
T Consensus 70 ~~lVi~at~d------~~ln~~i~~~a~~~~ 94 (205)
T TIGR01470 70 AFLVIAATDD------EELNRRVAHAARARG 94 (205)
T ss_pred cEEEEECCCC------HHHHHHHHHHHHHcC
Confidence 8899888863 567887777777643
No 44
>PRK03818 putative transporter; Validated
Probab=94.08 E-value=0.053 Score=63.02 Aligned_cols=65 Identities=11% Similarity=0.132 Sum_probs=52.7
Q ss_pred ceEEEecCCCCCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCCC
Q 005788 554 AEFYIKRWPQLDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPG 622 (677)
Q Consensus 554 ~ei~i~~~p~lvGktf~el~~~~-~~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg~~~di~~~~ 622 (677)
.|..+.+.++++|++++|+..+. .++.+.+|+| +| ..+.|.+|++|+.||+|.+.|+.+++.+..
T Consensus 291 ~E~Vvv~~S~liGkTL~eL~~r~~~Gv~VlaI~R---~g-~~l~~~~d~~Lq~GD~LlVvG~~~~i~~l~ 356 (552)
T PRK03818 291 SERVVVTNEKVLGKKLRDLHLKNKYGVVISRLNR---AG-VELVASPDLSLQFGDILNLVGRPEAIDAVA 356 (552)
T ss_pred EEEEEEcChhccCCcHHHhcccccCCeEEEEEeE---CC-eecCCCCCCEEecCCEEEEEECHHHHHHHH
Confidence 34455667899999999998663 4899999998 34 345678899999999999999999877654
No 45
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=93.69 E-value=0.36 Score=53.23 Aligned_cols=76 Identities=24% Similarity=0.219 Sum_probs=57.8
Q ss_pred EEEEeccchHHHHHHHHHHhcccCCCCe-EEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 005788 385 ILILGWSDKLGSLLKQLAVANKSIGGGV-IVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (677)
Q Consensus 385 III~G~g~~g~~Ll~eL~~~~~s~~~~~-iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~a 463 (677)
|+|+|.|..|..+++.|.... .. .|++.+++.+.+++..+++ ...++.+++-|..|.+.|.++ ++++|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~-----~~~~v~va~r~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~l~~~-~~~~dv 70 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG-----PFEEVTVADRNPEKAERLAEKL----LGDRVEAVQVDVNDPESLAEL-LRGCDV 70 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT-----CE-EEEEEESSHHHHHHHHT------TTTTEEEEE--TTTHHHHHHH-HTTSSE
T ss_pred CEEEcCcHHHHHHHHHHhcCC-----CCCcEEEEECCHHHHHHHHhhc----cccceeEEEEecCCHHHHHHH-HhcCCE
Confidence 789999999999999998654 23 7999999999988776532 245789999999999998887 888999
Q ss_pred EEEecCC
Q 005788 464 IIVLASD 470 (677)
Q Consensus 464 VIIltdd 470 (677)
||-++..
T Consensus 71 Vin~~gp 77 (386)
T PF03435_consen 71 VINCAGP 77 (386)
T ss_dssp EEE-SSG
T ss_pred EEECCcc
Confidence 9988863
No 46
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.03 E-value=1 Score=49.28 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=62.0
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChH---------------------HHHHHHHhhhcccCCcc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE---------------------EMEMDIAKLEFDFMGTS 439 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e---------------------~~e~~l~~~~~~~~~~~ 439 (677)
.+.||+|+|.|..|..+++.|...+. ..++++|.|.- +.+.+.+++..-.....
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGv-----g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~ 97 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGI-----GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVE 97 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcE
Confidence 46799999999999999999998752 36888888751 11111111110012345
Q ss_pred EEEEEeCCCCHHHHhccCcccccEEEEecCCCCCccchHHHHHHHHHHhhhc
Q 005788 440 VICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVK 491 (677)
Q Consensus 440 V~~I~Gd~~~~e~L~rA~I~~A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~ 491 (677)
+..+.++.+ .+.+++. ++++|.||..+|+ .+....+.-.+++.+
T Consensus 98 i~~~~~~~~-~~~~~~~-~~~~DlVid~~D~------~~~r~~in~~~~~~~ 141 (338)
T PRK12475 98 IVPVVTDVT-VEELEEL-VKEVDLIIDATDN------FDTRLLINDLSQKYN 141 (338)
T ss_pred EEEEeccCC-HHHHHHH-hcCCCEEEEcCCC------HHHHHHHHHHHHHcC
Confidence 666777764 3344443 6789999999964 445555555555544
No 47
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=92.88 E-value=0.99 Score=43.66 Aligned_cols=69 Identities=25% Similarity=0.151 Sum_probs=55.5
Q ss_pred EEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 005788 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (677)
Q Consensus 385 III~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~a 463 (677)
|+|+|. |..|..++++|...+ +.|+++-++++..+. ..++.++.||..+.+.+.++ +..+|+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~------~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~a-l~~~d~ 63 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG------HEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAA-LKGADA 63 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT------SEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHH-HTTSSE
T ss_pred eEEECCCChHHHHHHHHHHHCC------CEEEEEecCchhccc----------ccccccceeeehhhhhhhhh-hhhcch
Confidence 689996 778999999999875 677777778776654 24788999999999888774 448999
Q ss_pred EEEecCC
Q 005788 464 IIVLASD 470 (677)
Q Consensus 464 VIIltdd 470 (677)
||.+...
T Consensus 64 vi~~~~~ 70 (183)
T PF13460_consen 64 VIHAAGP 70 (183)
T ss_dssp EEECCHS
T ss_pred hhhhhhh
Confidence 9998864
No 48
>PRK04972 putative transporter; Provisional
Probab=92.65 E-value=0.14 Score=59.55 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=45.2
Q ss_pred CCCCcHHhHhhhC-CCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 005788 564 LDDLRFEEVVISF-PDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (677)
Q Consensus 564 lvGktf~el~~~~-~~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg~~~di~~~ 621 (677)
+.||+++|+..+. .++.+.+++| +++ ...|.+|++|++||+|++.|+.+++.++
T Consensus 228 ~~Gktl~el~~~~~~~v~I~~I~R---~g~-~~~p~~dt~L~~GDiL~V~G~~e~l~~l 282 (558)
T PRK04972 228 TDGKNLRELGIYRQTGCYIERIRR---NGI-LANPDGDAVLQMGDEIALVGYPDAHARL 282 (558)
T ss_pred cCCCCHHHHHhhcCCCEEEEEEEE---CCE-EecCCCCCEeCCCCEEEEEECHHHHHHH
Confidence 3799999998765 4899999988 455 5789999999999999999998876543
No 49
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.61 E-value=1.3 Score=49.38 Aligned_cols=77 Identities=19% Similarity=0.142 Sum_probs=62.4
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~ 462 (677)
..|+|+|.|.+|..++..|...+. .+|.++|+.++...++.... +.++.++.=|+.+.+.|.++= .+.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-----~~V~iAdRs~~~~~~i~~~~-----~~~v~~~~vD~~d~~al~~li-~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-----GEVTIADRSKEKCARIAELI-----GGKVEALQVDAADVDALVALI-KDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-----ceEEEEeCCHHHHHHHHhhc-----cccceeEEecccChHHHHHHH-hcCC
Confidence 579999999999999999987542 68999999998888765421 237889999999999997764 4449
Q ss_pred EEEEecCC
Q 005788 463 AIIVLASD 470 (677)
Q Consensus 463 aVIIltdd 470 (677)
+||.+.+.
T Consensus 71 ~VIn~~p~ 78 (389)
T COG1748 71 LVINAAPP 78 (389)
T ss_pred EEEEeCCc
Confidence 99999975
No 50
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=91.41 E-value=2.7 Score=43.44 Aligned_cols=86 Identities=12% Similarity=0.021 Sum_probs=57.6
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..+++|+|.|+++..=++.|...+ ..+.|+...-.++++.... ..++.++..+. ++++| +.|
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~g-----A~VtVVap~i~~el~~l~~-------~~~i~~~~r~~-~~~dl-----~g~ 86 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKG-----CYVYILSKKFSKEFLDLKK-------YGNLKLIKGNY-DKEFI-----KDK 86 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-----CEEEEEcCCCCHHHHHHHh-------CCCEEEEeCCC-ChHHh-----CCC
Confidence 458999999999998888888765 2344444443445554432 23566676554 45555 568
Q ss_pred cEEEEecCCCCCccchHHHHHHHHHHhhhc
Q 005788 462 RAIIVLASDENADQSDARALRVVLSLTGVK 491 (677)
Q Consensus 462 ~aVIIltdd~~~~~sDa~NI~i~Lsar~l~ 491 (677)
+.||+.|++ .+.|-.+.-.++..+
T Consensus 87 ~LViaATdD------~~vN~~I~~~a~~~~ 110 (223)
T PRK05562 87 HLIVIATDD------EKLNNKIRKHCDRLY 110 (223)
T ss_pred cEEEECCCC------HHHHHHHHHHHHHcC
Confidence 999999964 677877777777643
No 51
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=90.66 E-value=0.34 Score=54.03 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=47.1
Q ss_pred ecCCCCCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCC
Q 005788 559 KRWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAP 621 (677)
Q Consensus 559 ~~~p~lvGktf~el~~~~~~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg~~~di~~~ 621 (677)
..+.+++|+.+++++. .+.+.+.++.| ||+ .++|.++++|++||++++++.+.+....
T Consensus 420 ~k~~~~ig~~lr~l~~-p~~~~~~~v~R---d~q-~i~p~g~t~l~~gD~l~v~~~~~d~~~l 477 (574)
T COG3263 420 AKDKWCVGAALRNLRM-PKWTRIAAVFR---DGQ-LIHPQGSTRLREGDVLCVIGSERDLRAL 477 (574)
T ss_pred hcCCcccchhhhhccC-CccceeeeEEe---cCc-eeccCCCceeecCCEEEEEeccccHHHH
Confidence 3456899999999862 23678888888 554 6899999999999999999999877654
No 52
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=90.35 E-value=1.5 Score=50.64 Aligned_cols=135 Identities=16% Similarity=0.190 Sum_probs=72.8
Q ss_pred CcchhhHHHHHHHHHHHHHHH------HHHHhhhhhhhhhhccccccccCCCCccchhhhheeeccccchHHHHHHHHHH
Q 005788 221 NADGRTVALYSVIVTLLMPFV------LYKYLDYLPQIKNFSKRTKKNKEEVPLKKRVAYSVDVCFSVYPYAKLLALLFA 294 (677)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~k~~~~l~~rl~Y~ld~~~s~~~~~~l~~Ll~~ 294 (677)
-.+..++++++.+|.-..|-. +.+.+-.+...+..+++..+++.-.+. .-+++-.......+.++.+++
T Consensus 331 ~~~~~~~~~~~~MfIGg~~gSTaGGIK~~r~~il~~~~~~~l~~~~~p~~v~~~-----k~~~r~i~~~~i~~~~~~~~l 405 (499)
T COG0168 331 WPPATLVLLMLLMFIGGSPGSTAGGIKTTRFAVLLKALKRELRRLGHPNAVISV-----KIFGRAIDEDTIRKALAFFFL 405 (499)
T ss_pred cChHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHHHHHhcCcccceee-----EEcCccCCHHHHHHHHHHHHH
Confidence 455667777777766322221 444444444433323322222211110 011122223344556666677
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHhhhccCCCC--c-cCCCCC------eEEeeeehhhh-HHHHHHHHHH
Q 005788 295 TIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHA--D-RVGTGP------RIVSVSISSGG-MLIFAMMLGL 360 (677)
Q Consensus 295 ~l~lil~g~l~~~~iE~~s~~dAlw~t~vTiTTvGyg~--~-p~t~~g------Ri~~v~lil~G-i~ifa~lig~ 360 (677)
.+++++++++.+...+..++.++++-++..+.|+|-+. . +.+..+ +++.++.|+.| +.++++++..
T Consensus 406 ~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~GRleil~~lv~~ 481 (499)
T COG0168 406 YLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIGRLEILTVLVLF 481 (499)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhhccchhhHHHhh
Confidence 77777777777776665589999999999999999842 2 122223 66555555544 5555555443
No 53
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=90.30 E-value=1.6 Score=44.69 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=59.7
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
....++|+|.|+++..=++-|...+ ..+.|+.++-.+++.....+ .++..+. +..+.+.+..
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~g-----a~v~Vvs~~~~~el~~~~~~-------~~i~~~~-~~~~~~~~~~----- 72 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAG-----ADVTVVSPEFEPELKALIEE-------GKIKWIE-REFDAEDLDD----- 72 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC-----CEEEEEcCCccHHHHHHHHh-------cCcchhh-cccChhhhcC-----
Confidence 3568999999999999899988775 24555555544666666553 2344455 5555555554
Q ss_pred ccEEEEecCCCCCccchHHHHHHHHHHhhhc
Q 005788 461 ARAIIVLASDENADQSDARALRVVLSLTGVK 491 (677)
Q Consensus 461 A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~ 491 (677)
|..||+.|+| .+.|-.+.-.++..+
T Consensus 73 ~~lviaAt~d------~~ln~~i~~~a~~~~ 97 (210)
T COG1648 73 AFLVIAATDD------EELNERIAKAARERR 97 (210)
T ss_pred ceEEEEeCCC------HHHHHHHHHHHHHhC
Confidence 8999999964 567777777787755
No 54
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=89.84 E-value=0.74 Score=45.20 Aligned_cols=92 Identities=13% Similarity=0.229 Sum_probs=51.9
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
.-.+++|||||..|..+++.|+..+ ..|++.|.||...-++..+ +.++ . .++++ +.+
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~G------a~V~V~e~DPi~alqA~~d------Gf~v--~--------~~~~a-~~~ 78 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLG------ARVTVTEIDPIRALQAAMD------GFEV--M--------TLEEA-LRD 78 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-------EEEEE-SSHHHHHHHHHT------T-EE--E---------HHHH-TTT
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCC------CEEEEEECChHHHHHhhhc------CcEe--c--------CHHHH-Hhh
Confidence 3567999999999999999998764 7899999998654433321 2222 1 23333 568
Q ss_pred ccEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCC
Q 005788 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLD 506 (677)
Q Consensus 461 A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e 506 (677)
||.+|..|.+.+ +...--.+.+. +.-|++.+-.-+
T Consensus 79 adi~vtaTG~~~--------vi~~e~~~~mk---dgail~n~Gh~d 113 (162)
T PF00670_consen 79 ADIFVTATGNKD--------VITGEHFRQMK---DGAILANAGHFD 113 (162)
T ss_dssp -SEEEE-SSSSS--------SB-HHHHHHS----TTEEEEESSSST
T ss_pred CCEEEECCCCcc--------ccCHHHHHHhc---CCeEEeccCcCc
Confidence 998888886521 21222344455 334777665433
No 55
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=89.66 E-value=1.9 Score=53.78 Aligned_cols=106 Identities=18% Similarity=0.110 Sum_probs=71.4
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccC--------CCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHH
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSI--------GGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILAD 452 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~--------~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~ 452 (677)
...+|+|+|.|..|...++.|....... .....|+++|.+++..+++.+.+ .++..+..|..|.+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~------~~~~~v~lDv~D~e~ 641 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI------ENAEAVQLDVSDSES 641 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc------CCCceEEeecCCHHH
Confidence 3669999999999999999997532100 11235888999988877665431 145678888999999
Q ss_pred HhccCcccccEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCC
Q 005788 453 LKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSD 504 (677)
Q Consensus 453 L~rA~I~~A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d 504 (677)
|.++ ++.+|+||++++. ..+..++.++-+.+ +|++.+-.+
T Consensus 642 L~~~-v~~~DaVIsalP~-------~~H~~VAkaAieaG----kHvv~eky~ 681 (1042)
T PLN02819 642 LLKY-VSQVDVVISLLPA-------SCHAVVAKACIELK----KHLVTASYV 681 (1042)
T ss_pred HHHh-hcCCCEEEECCCc-------hhhHHHHHHHHHcC----CCEEECcCC
Confidence 8775 4569999999974 23444444444433 356666433
No 56
>CHL00194 ycf39 Ycf39; Provisional
Probab=89.40 E-value=2.5 Score=45.10 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=52.3
Q ss_pred eEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 005788 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (677)
Q Consensus 384 HIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~ 462 (677)
+|+|.|. |-.|..++++|...+ +.|+.+.++.+..... . ..++.++.||..+++.|.++ ++.+|
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g------~~V~~l~R~~~~~~~l-~-------~~~v~~v~~Dl~d~~~l~~a-l~g~d 66 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEG------YQVRCLVRNLRKASFL-K-------EWGAELVYGDLSLPETLPPS-FKGVT 66 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC------CeEEEEEcChHHhhhH-h-------hcCCEEEECCCCCHHHHHHH-HCCCC
Confidence 6899986 667999999998764 6777777776443221 1 23678899999999998765 45689
Q ss_pred EEEEecC
Q 005788 463 AIIVLAS 469 (677)
Q Consensus 463 aVIIltd 469 (677)
+||-+..
T Consensus 67 ~Vi~~~~ 73 (317)
T CHL00194 67 AIIDAST 73 (317)
T ss_pred EEEECCC
Confidence 9888764
No 57
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.29 E-value=1.8 Score=43.76 Aligned_cols=102 Identities=9% Similarity=0.070 Sum_probs=61.6
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..+++|.|+|+.|..+++.|...+ ..|+++|.+++.+++..+.+ +..++.. +.+ ...++
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G------~~Vvv~D~~~~~~~~~~~~~-------g~~~v~~-----~~l---~~~~~ 86 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEG------AKLIVADINEEAVARAAELF-------GATVVAP-----EEI---YSVDA 86 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC------CEEEEEcCCHHHHHHHHHHc-------CCEEEcc-----hhh---ccccC
Confidence 357999999999999999998764 67889999988776654321 1222211 222 22368
Q ss_pred cEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEE-eCC----CCCHHHHHHcCCC
Q 005788 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVE-MSD----LDNEPLVKLVGGE 517 (677)
Q Consensus 462 ~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIAr-v~d----~e~~~~l~~aGad 517 (677)
|.++-.+-. ++...-.+++++ +++|++ .++ ++..+.|+..|+.
T Consensus 87 Dv~vp~A~~---------~~I~~~~~~~l~----~~~v~~~AN~~~~~~~~~~~L~~~Gi~ 134 (200)
T cd01075 87 DVFAPCALG---------GVINDDTIPQLK----AKAIAGAANNQLADPRHGQMLHERGIL 134 (200)
T ss_pred CEEEecccc---------cccCHHHHHHcC----CCEEEECCcCccCCHhHHHHHHHCCCE
Confidence 888855532 122222344554 235554 444 4556667777753
No 58
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=88.95 E-value=0.67 Score=44.59 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHhhhccCCCCc-cC-----CCCCeEEe-eeehhhhHHHHHHHHHHH
Q 005788 312 SSFAEALWLSWTFVADSGNHAD-RV-----GTGPRIVS-VSISSGGMLIFAMMLGLV 361 (677)
Q Consensus 312 ~s~~dAlw~t~vTiTTvGyg~~-p~-----t~~gRi~~-v~lil~Gi~ifa~lig~i 361 (677)
.++..|+|+++.++|+.|+++. +. +..+.++. .++++++++++++++|++
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 4799999999999999999865 33 44566665 566677778888888764
No 59
>PRK06914 short chain dehydrogenase; Provisional
Probab=88.38 E-value=1.9 Score=44.65 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=55.2
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 005788 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (677)
Q Consensus 382 knHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA---- 456 (677)
..+++|+|.+ ..|..++++|...+ ..|+++.++++..++..+.......+.++.++.+|.++++.+++.
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~ 76 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKG------YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVL 76 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC------CEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHH
Confidence 3578999975 46889999998653 678888888776655433221100124688899999999887651
Q ss_pred -CcccccEEEEecCC
Q 005788 457 -SVSKARAIIVLASD 470 (677)
Q Consensus 457 -~I~~A~aVIIltdd 470 (677)
.....+.+|-.+..
T Consensus 77 ~~~~~id~vv~~ag~ 91 (280)
T PRK06914 77 KEIGRIDLLVNNAGY 91 (280)
T ss_pred HhcCCeeEEEECCcc
Confidence 12345888877653
No 60
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=88.31 E-value=0.3 Score=53.49 Aligned_cols=76 Identities=24% Similarity=0.213 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHhhhccCCCCccCCC--C-CeEEeeeehhhhHHHHHHHHHHHHHHHHHhhhhhccCccceeecCeEEEE
Q 005788 312 SSFAEALWLSWTFVADSGNHADRVGT--G-PRIVSVSISSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIEKNHILIL 388 (677)
Q Consensus 312 ~s~~dAlw~t~vTiTTvGyg~~p~t~--~-gRi~~v~lil~Gi~ifa~lig~it~~i~~~i~~lr~G~~~v~~knHIII~ 388 (677)
.+|..||-|++.|=||.|||..-.|. + +-+..++-.+.|.++=++++|.+...+.. -+++.......+|-|||
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiar----PkKRAeTl~FS~~AVI~ 186 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIAR----PKKRAETLIFSDHAVIA 186 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----chhhhheeeeccceEEE
Confidence 37999999999999999999643222 2 33334455677888888888877555433 23333345678999998
Q ss_pred ecc
Q 005788 389 GWS 391 (677)
Q Consensus 389 G~g 391 (677)
=-+
T Consensus 187 ~RD 189 (400)
T KOG3827|consen 187 LRD 189 (400)
T ss_pred eeC
Confidence 544
No 61
>PRK09186 flagellin modification protein A; Provisional
Probab=87.85 E-value=2 Score=43.70 Aligned_cols=81 Identities=22% Similarity=0.170 Sum_probs=54.7
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
.+.++|.|.+. .|..++++|...+ ..|+++.++++..++..+++.....+..+.++.+|..+++.++++--
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g------~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAG------GIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKS 77 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHH
Confidence 45788998765 6889999998764 57888888877766655443221223356677999999988766321
Q ss_pred ----ccccEEEEec
Q 005788 459 ----SKARAIIVLA 468 (677)
Q Consensus 459 ----~~A~aVIIlt 468 (677)
..-|.+|-.+
T Consensus 78 ~~~~~~id~vi~~A 91 (256)
T PRK09186 78 AEKYGKIDGAVNCA 91 (256)
T ss_pred HHHcCCccEEEECC
Confidence 1257777665
No 62
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.69 E-value=6.2 Score=43.26 Aligned_cols=98 Identities=18% Similarity=0.086 Sum_probs=59.2
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHH---------------------HHHHHHhhhcccCCcc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEE---------------------MEMDIAKLEFDFMGTS 439 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~---------------------~e~~l~~~~~~~~~~~ 439 (677)
.+-+|+|+|.|..|..+++.|...+. ..++++|.|.-+ .+.+.+++..-.....
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~ 97 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGV-----GKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVR 97 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcE
Confidence 56899999999999999999998752 368888887411 1111111110001235
Q ss_pred EEEEEeCCCCHHHHhccCcccccEEEEecCCCCCccchHHHHHHHHHHhhhc
Q 005788 440 VICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVK 491 (677)
Q Consensus 440 V~~I~Gd~~~~e~L~rA~I~~A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~ 491 (677)
+..+.++.+. +.+... ++++|.||..+|+ .+....+.-.+++.+
T Consensus 98 v~~~~~~~~~-~~~~~~-~~~~DlVid~~Dn------~~~r~~ln~~~~~~~ 141 (339)
T PRK07688 98 VEAIVQDVTA-EELEEL-VTGVDLIIDATDN------FETRFIVNDAAQKYG 141 (339)
T ss_pred EEEEeccCCH-HHHHHH-HcCCCEEEEcCCC------HHHHHHHHHHHHHhC
Confidence 6666666544 333333 6789999999864 444444444455544
No 63
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=87.11 E-value=4.2 Score=36.41 Aligned_cols=80 Identities=11% Similarity=0.064 Sum_probs=49.9
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
...+++|+|.|+.+..-++.|.+.+ ..|.++..+.+..+ + .+.+. .... + ..++.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~g------A~v~vis~~~~~~~----~--------~i~~~-~~~~-----~-~~l~~ 60 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAG------AKVTVISPEIEFSE----G--------LIQLI-RREF-----E-EDLDG 60 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCT------BEEEEEESSEHHHH----T--------SCEEE-ESS------G-GGCTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC------CEEEEECCchhhhh----h--------HHHHH-hhhH-----H-HHHhh
Confidence 4678999999999999999998764 45666655542222 1 12222 2222 2 34777
Q ss_pred ccEEEEecCCCCCccchHHHHHHHHHHhhhc
Q 005788 461 ARAIIVLASDENADQSDARALRVVLSLTGVK 491 (677)
Q Consensus 461 A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~ 491 (677)
++.|++.+++ .+.|-.+...+|+.+
T Consensus 61 ~~lV~~at~d------~~~n~~i~~~a~~~~ 85 (103)
T PF13241_consen 61 ADLVFAATDD------PELNEAIYADARARG 85 (103)
T ss_dssp ESEEEE-SS-------HHHHHHHHHHHHHTT
T ss_pred heEEEecCCC------HHHHHHHHHHHhhCC
Confidence 9999988853 667777777777654
No 64
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=86.89 E-value=3.5 Score=44.46 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=64.7
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
...+|+|+|.|..|..+++.|...+ ...|++++++++..++..+++ +. . ..+.+++.++ +.+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g-----~~~V~v~~r~~~ra~~la~~~-----g~--~-----~~~~~~~~~~-l~~ 238 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKG-----VAEITIANRTYERAEELAKEL-----GG--N-----AVPLDELLEL-LNE 238 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcC-----CCEEEEEeCCHHHHHHHHHHc-----CC--e-----EEeHHHHHHH-Hhc
Confidence 4578999999999999999987632 367889999988776655432 11 1 1123445443 667
Q ss_pred ccEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCCHH
Q 005788 461 ARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEP 509 (677)
Q Consensus 461 A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~~~ 509 (677)
||.||..+.... ..++...+...... ...+++-+..|.+.+
T Consensus 239 aDvVi~at~~~~-----~~~~~~~~~~~~~~---~~~~viDlavPrdi~ 279 (311)
T cd05213 239 ADVVISATGAPH-----YAKIVERAMKKRSG---KPRLIVDLAVPRDIE 279 (311)
T ss_pred CCEEEECCCCCc-----hHHHHHHHHhhCCC---CCeEEEEeCCCCCCc
Confidence 999999997521 11222222111111 346888888877654
No 65
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=86.57 E-value=2.4 Score=44.88 Aligned_cols=82 Identities=22% Similarity=0.172 Sum_probs=61.9
Q ss_pred ecCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 005788 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (677)
Q Consensus 381 ~knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~ 459 (677)
...+++|.|... .|..++++|...+ +.+||+.+++++++++.+++...+ +-.+.++.-|.++++++.+.--+
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g------~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~ 77 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRG------YNLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDE 77 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHH
Confidence 467899999987 5889999998764 899999999999998877765433 45678899999999888875432
Q ss_pred ------cccEEEEecC
Q 005788 460 ------KARAIIVLAS 469 (677)
Q Consensus 460 ------~A~aVIIltd 469 (677)
.-|.+|-.+.
T Consensus 78 l~~~~~~IdvLVNNAG 93 (265)
T COG0300 78 LKERGGPIDVLVNNAG 93 (265)
T ss_pred HHhcCCcccEEEECCC
Confidence 3455554443
No 66
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=86.26 E-value=2.6 Score=43.34 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=52.2
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCC-HHHHhccCcc
Q 005788 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLI-LADLKKVSVS 459 (677)
Q Consensus 382 knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~-~e~L~rA~I~ 459 (677)
...|+|+|. |..|..++++|...+ +.|+...++++..+.... .+.++.++.||..+ .+.+.++-..
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g------~~V~~~~R~~~~~~~~~~------~~~~~~~~~~Dl~d~~~~l~~~~~~ 84 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKG------FAVKAGVRDVDKAKTSLP------QDPSLQIVRADVTEGSDKLVEAIGD 84 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC------CEEEEEecCHHHHHHhcc------cCCceEEEEeeCCCCHHHHHHHhhc
Confidence 457999996 678999999998753 567666666655443221 12368889999988 4566544224
Q ss_pred cccEEEEecCC
Q 005788 460 KARAIIVLASD 470 (677)
Q Consensus 460 ~A~aVIIltdd 470 (677)
.+|.||..+..
T Consensus 85 ~~d~vi~~~g~ 95 (251)
T PLN00141 85 DSDAVICATGF 95 (251)
T ss_pred CCCEEEECCCC
Confidence 78999987653
No 67
>PRK07326 short chain dehydrogenase; Provisional
Probab=86.04 E-value=3.3 Score=41.51 Aligned_cols=80 Identities=20% Similarity=0.140 Sum_probs=55.8
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 382 knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
...++|.|. |..|..++++|...+ ..|++++++++..++..+++.. ..++.++.+|..+.+.++++--
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g------~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~D~~~~~~~~~~~~~~ 76 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEG------YKVAITARDQKELEEAAAELNN---KGNVLGLAADVRDEADVQRAVDAI 76 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCC------CEEEEeeCCHHHHHHHHHHHhc---cCcEEEEEccCCCHHHHHHHHHHH
Confidence 467889986 557899999998643 5688888888766655443321 1467889999999988765321
Q ss_pred ----ccccEEEEecCC
Q 005788 459 ----SKARAIIVLASD 470 (677)
Q Consensus 459 ----~~A~aVIIltdd 470 (677)
...+.||-.+..
T Consensus 77 ~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 77 VAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHcCCCCEEEECCCC
Confidence 367888876643
No 68
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=85.97 E-value=3.1 Score=41.30 Aligned_cols=79 Identities=16% Similarity=0.039 Sum_probs=54.4
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 382 knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
..+++|+|. |..+..+++.|...+ ..|+++.++.+..+...+.+... .+..+...+..+.+++.+ -+.+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g------~~V~l~~R~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~-~~~~ 97 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREG------ARVVLVGRDLERAQKAADSLRAR---FGEGVGAVETSDDAARAA-AIKG 97 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC------CEEEEEcCCHHHHHHHHHHHHhh---cCCcEEEeeCCCHHHHHH-HHhc
Confidence 468999996 888999999998643 57888888887776655433211 123345567777777654 3467
Q ss_pred ccEEEEecCC
Q 005788 461 ARAIIVLASD 470 (677)
Q Consensus 461 A~aVIIltdd 470 (677)
||.||..++.
T Consensus 98 ~diVi~at~~ 107 (194)
T cd01078 98 ADVVFAAGAA 107 (194)
T ss_pred CCEEEECCCC
Confidence 8988887754
No 69
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=85.91 E-value=2.2 Score=40.21 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=54.1
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
...+++|+|.|..+..++..|...+. ..|.++.++.++.+++.+.+ .+..+.++.- +++. ..+.+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~-----~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~~-----~~~~-~~~~~ 75 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA-----KEITIVNRTPERAEALAEEF----GGVNIEAIPL-----EDLE-EALQE 75 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS-----SEEEEEESSHHHHHHHHHHH----TGCSEEEEEG-----GGHC-HHHHT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC-----CEEEEEECCHHHHHHHHHHc----CccccceeeH-----HHHH-HHHhh
Confidence 57899999999999999999998752 46889999999888877654 1233444322 2333 33678
Q ss_pred ccEEEEecCC
Q 005788 461 ARAIIVLASD 470 (677)
Q Consensus 461 A~aVIIltdd 470 (677)
||.||..++-
T Consensus 76 ~DivI~aT~~ 85 (135)
T PF01488_consen 76 ADIVINATPS 85 (135)
T ss_dssp ESEEEE-SST
T ss_pred CCeEEEecCC
Confidence 9999998875
No 70
>PRK04148 hypothetical protein; Provisional
Probab=85.64 E-value=1.8 Score=41.20 Aligned_cols=71 Identities=14% Similarity=0.109 Sum_probs=53.5
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..+++++|.| .|..++..|.+. |+.|+.+|.+++.++.+.+ ..+.++.+|..+++. .- -+.|
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~------G~~ViaIDi~~~aV~~a~~--------~~~~~v~dDlf~p~~-~~--y~~a 78 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKES------GFDVIVIDINEKAVEKAKK--------LGLNAFVDDLFNPNL-EI--YKNA 78 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHC------CCEEEEEECCHHHHHHHHH--------hCCeEEECcCCCCCH-HH--HhcC
Confidence 3679999999 788899999865 3899999999998876643 246788899876532 11 3468
Q ss_pred cEEEEecCC
Q 005788 462 RAIIVLASD 470 (677)
Q Consensus 462 ~aVIIltdd 470 (677)
+.|...-+.
T Consensus 79 ~liysirpp 87 (134)
T PRK04148 79 KLIYSIRPP 87 (134)
T ss_pred CEEEEeCCC
Confidence 888887764
No 71
>PRK08251 short chain dehydrogenase; Provisional
Probab=85.62 E-value=3.2 Score=42.05 Aligned_cols=82 Identities=21% Similarity=0.184 Sum_probs=55.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA---- 456 (677)
+..++|.|.+. .|..++++|.+.+ ..|++++++++..++...++.....+.++.++.+|.++.+.++++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG------RDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEF 75 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHH
Confidence 35688998765 5888999998653 578888888776665544322111234688899999999876542
Q ss_pred --CcccccEEEEecC
Q 005788 457 --SVSKARAIIVLAS 469 (677)
Q Consensus 457 --~I~~A~aVIIltd 469 (677)
.....|.+|..+.
T Consensus 76 ~~~~~~id~vi~~ag 90 (248)
T PRK08251 76 RDELGGLDRVIVNAG 90 (248)
T ss_pred HHHcCCCCEEEECCC
Confidence 2235677777664
No 72
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=85.53 E-value=5.7 Score=40.14 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=48.7
Q ss_pred EEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 005788 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (677)
Q Consensus 385 III~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~-e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~ 462 (677)
|+|.|. |..|..+++.|...+ +.|.+.-++. ...-..++ ..++.++.||..+.+.|.++ .+.++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~------~~V~~l~R~~~~~~~~~l~-------~~g~~vv~~d~~~~~~l~~a-l~g~d 66 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG------FSVRALVRDPSSDRAQQLQ-------ALGAEVVEADYDDPESLVAA-LKGVD 66 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT------GCEEEEESSSHHHHHHHHH-------HTTTEEEES-TT-HHHHHHH-HTTCS
T ss_pred CEEECCccHHHHHHHHHHHhCC------CCcEEEEeccchhhhhhhh-------cccceEeecccCCHHHHHHH-HcCCc
Confidence 678886 888999999999843 4455544443 22222222 23567789999999999664 67999
Q ss_pred EEEEecCC
Q 005788 463 AIIVLASD 470 (677)
Q Consensus 463 aVIIltdd 470 (677)
+||++++.
T Consensus 67 ~v~~~~~~ 74 (233)
T PF05368_consen 67 AVFSVTPP 74 (233)
T ss_dssp EEEEESSC
T ss_pred eEEeecCc
Confidence 99999974
No 73
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=85.31 E-value=7.3 Score=41.01 Aligned_cols=71 Identities=23% Similarity=0.217 Sum_probs=46.3
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCC----CCHHHHhccCcc
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSP----LILADLKKVSVS 459 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~----~~~e~L~rA~I~ 459 (677)
+|.|+|.|..|..++..|...+ +.|.+++++++..+.+.++ +..+ -.|+. ....++.. ++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g------~~V~~~~r~~~~~~~~~~~------g~~~--~~~~~~~~~~~~~~~~~--~~ 65 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG------HDVTLVARRGAHLDALNEN------GLRL--EDGEITVPVLAADDPAE--LG 65 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC------CeEEEEECChHHHHHHHHc------CCcc--cCCceeecccCCCChhH--cC
Confidence 6999999999999999998653 6899999877776654331 1111 01211 11122222 37
Q ss_pred cccEEEEecCC
Q 005788 460 KARAIIVLASD 470 (677)
Q Consensus 460 ~A~aVIIltdd 470 (677)
.+|.||+.+..
T Consensus 66 ~~d~vila~k~ 76 (304)
T PRK06522 66 PQDLVILAVKA 76 (304)
T ss_pred CCCEEEEeccc
Confidence 89999999864
No 74
>PRK06194 hypothetical protein; Provisional
Probab=84.99 E-value=3.7 Score=42.67 Aligned_cols=81 Identities=15% Similarity=0.109 Sum_probs=57.3
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
.++++|.|.+. .|..++++|...+ ..|++++++.+..++..+++.. .+.++.++.+|.++.+.++++--
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~~~ 77 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALG------MKLVLADVQQDALDRAVAELRA--QGAEVLGVRTDVSDAAQVEALADAA 77 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCC------CEEEEEeCChHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 35789998755 6889999998753 6788888887666655443321 13467889999999998876421
Q ss_pred ----ccccEEEEecCC
Q 005788 459 ----SKARAIIVLASD 470 (677)
Q Consensus 459 ----~~A~aVIIltdd 470 (677)
...|.+|-++..
T Consensus 78 ~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 78 LERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHcCCCCEEEECCCC
Confidence 235888887764
No 75
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=84.92 E-value=3.5 Score=38.97 Aligned_cols=81 Identities=20% Similarity=0.172 Sum_probs=56.4
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCC--hHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--C
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD--KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S 457 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d--~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA--~ 457 (677)
++++|.|.+. .|..++++|...+ +..|+++.++ .+..++...++.. .+.++.++..|.++.+.++++ .
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g-----~~~v~~~~r~~~~~~~~~l~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~ 73 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRG-----ARVVILTSRSEDSEGAQELIQELKA--PGAKITFIECDLSDPESIRALIEE 73 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT-----TEEEEEEESSCHHHHHHHHHHHHHH--TTSEEEEEESETTSHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC-----ceEEEEeeecccccccccccccccc--cccccccccccccccccccccccc
Confidence 3689999766 6889999999863 3577777777 5555555444331 246889999999999887763 1
Q ss_pred ----cccccEEEEecCC
Q 005788 458 ----VSKARAIIVLASD 470 (677)
Q Consensus 458 ----I~~A~aVIIltdd 470 (677)
-..-|.+|-.+.-
T Consensus 74 ~~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 74 VIKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHHSSESEEEEECSC
T ss_pred ccccccccccccccccc
Confidence 2255777776655
No 76
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=84.87 E-value=14 Score=35.08 Aligned_cols=76 Identities=16% Similarity=0.124 Sum_probs=48.8
Q ss_pred CeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc--ccCCccEEEEEeCCCCHHHHhccCcc
Q 005788 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF--DFMGTSVICRSGSPLILADLKKVSVS 459 (677)
Q Consensus 383 nHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~--~~~~~~V~~I~Gd~~~~e~L~rA~I~ 459 (677)
.+|.|+|. |.+|..++-.|...+ -...++|+|.+++..+....++.+ .+...++. +.+ .+.++ ++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~----l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~-i~~--~~~~~-----~~ 68 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQG----LADEIVLIDINEDKAEGEALDLSHASAPLPSPVR-ITS--GDYEA-----LK 68 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTT----TSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEE-EEE--SSGGG-----GT
T ss_pred CEEEEECCCChHHHHHHHHHHhCC----CCCceEEeccCcccceeeehhhhhhhhhcccccc-ccc--ccccc-----cc
Confidence 47999999 999999998888654 246799999997655444333321 11112222 222 33433 45
Q ss_pred cccEEEEecCC
Q 005788 460 KARAIIVLASD 470 (677)
Q Consensus 460 ~A~aVIIltdd 470 (677)
+||.||+++..
T Consensus 69 ~aDivvitag~ 79 (141)
T PF00056_consen 69 DADIVVITAGV 79 (141)
T ss_dssp TESEEEETTST
T ss_pred cccEEEEeccc
Confidence 88999998876
No 77
>PRK08265 short chain dehydrogenase; Provisional
Probab=84.86 E-value=3.4 Score=42.57 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=55.1
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.+.++|.|.+. .|..++++|.+.+ ..|++.+++++..++..++. +.++.++.+|.++++.++++-
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAG------ARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATV 74 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHH
Confidence 46788888744 6889999998764 67888898887666654432 346788999999998876531
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
..+.|.+|-.+.
T Consensus 75 ~~~~g~id~lv~~ag 89 (261)
T PRK08265 75 VARFGRVDILVNLAC 89 (261)
T ss_pred HHHhCCCCEEEECCC
Confidence 124577776654
No 78
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=84.26 E-value=4.5 Score=41.50 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=63.8
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh----------HHHHHHHHhhhcccCCccEEEE-EeCCCC
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK----------EEMEMDIAKLEFDFMGTSVICR-SGSPLI 449 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~----------e~~e~~l~~~~~~~~~~~V~~I-~Gd~~~ 449 (677)
...+++|.|+|.+|..+++.|.+.+ ..+|.++|.+. +.++...+.. ++... .++..+
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G-----~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~-------~~~~~~~~~~~~ 89 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEG-----GKVLAVSDPDGYIYDPGITTEELINYAVALG-------GSARVKVQDYFP 89 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-----CEEEEEEcCCCcEECCCCCHHHHHHHHHhhC-------CccccCcccccC
Confidence 4579999999999999999998763 46788889887 5554432211 11111 234444
Q ss_pred HHHHhccCcccccEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCC----CCCHHHHHHcC
Q 005788 450 LADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSD----LDNEPLVKLVG 515 (677)
Q Consensus 450 ~e~L~rA~I~~A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d----~e~~~~l~~aG 515 (677)
.+.+.. + +||.+|-.+.. | +...-.++++ ++++|++.-| ++..+.|+.-|
T Consensus 90 ~~~l~~--~-~~DVlipaA~~------~---~i~~~~a~~l----~a~~V~e~AN~p~t~~a~~~L~~~G 143 (217)
T cd05211 90 GEAILG--L-DVDIFAPCALG------N---VIDLENAKKL----KAKVVAEGANNPTTDEALRILHERG 143 (217)
T ss_pred ccccee--c-cccEEeecccc------C---ccChhhHhhc----CccEEEeCCCCCCCHHHHHHHHHCC
Confidence 455553 3 78988888853 2 1112223333 3567777655 33344555555
No 79
>PRK09291 short chain dehydrogenase; Provisional
Probab=84.18 E-value=5.4 Score=40.51 Aligned_cols=79 Identities=14% Similarity=-0.011 Sum_probs=55.8
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
.+++|.|.+. .|..++++|...+ ..|++..++++..++..+... ..+.++.++.+|..+.+.++++--...
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G------~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~i 74 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG------HNVIAGVQIAPQVTALRAEAA--RRGLALRVEKLDLTDAIDRAQAAEWDV 74 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHH--hcCCcceEEEeeCCCHHHHHHHhcCCC
Confidence 4789999865 6888999998754 567777777655544332211 113457889999999999988744578
Q ss_pred cEEEEecC
Q 005788 462 RAIIVLAS 469 (677)
Q Consensus 462 ~aVIIltd 469 (677)
|.+|-.+.
T Consensus 75 d~vi~~ag 82 (257)
T PRK09291 75 DVLLNNAG 82 (257)
T ss_pred CEEEECCC
Confidence 88888765
No 80
>PRK07024 short chain dehydrogenase; Provisional
Probab=84.03 E-value=3.8 Score=41.99 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=54.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.++++|.|.+. .|..++++|...+ ..|++++++++.+++..+++.. .+ ++.++.+|.++.+.++++-
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~-~~~~~~~Dl~~~~~i~~~~~~~ 72 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG------ATLGLVARRTDALQAFAARLPK--AA-RVSVYAADVRDADALAAAAADF 72 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHhccc--CC-eeEEEEcCCCCHHHHHHHHHHH
Confidence 35799999765 6889999998653 5788889888777665443211 11 6788999999988876531
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
...-|.+|-.+.
T Consensus 73 ~~~~g~id~lv~~ag 87 (257)
T PRK07024 73 IAAHGLPDVVIANAG 87 (257)
T ss_pred HHhCCCCCEEEECCC
Confidence 123577776654
No 81
>PRK07831 short chain dehydrogenase; Provisional
Probab=84.02 E-value=3.9 Score=41.96 Aligned_cols=82 Identities=9% Similarity=0.009 Sum_probs=53.4
Q ss_pred cCeEEEEec-c-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc-
Q 005788 382 KNHILILGW-S-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (677)
Q Consensus 382 knHIII~G~-g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I- 458 (677)
.+.++|.|. | ..|..+++.|...+ ..|++++++++..++..+++...+...++.++.+|..+++.++++--
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 90 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEG------ARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDA 90 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 467899997 4 48999999998654 56888888877666554432211112357778888888876654311
Q ss_pred -----ccccEEEEecC
Q 005788 459 -----SKARAIIVLAS 469 (677)
Q Consensus 459 -----~~A~aVIIltd 469 (677)
...|.+|-.+.
T Consensus 91 ~~~~~g~id~li~~ag 106 (262)
T PRK07831 91 AVERLGRLDVLVNNAG 106 (262)
T ss_pred HHHHcCCCCEEEECCC
Confidence 24566666664
No 82
>PRK06949 short chain dehydrogenase; Provisional
Probab=83.96 E-value=5.1 Score=40.74 Aligned_cols=81 Identities=22% Similarity=0.138 Sum_probs=56.0
Q ss_pred ecCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc-
Q 005788 381 EKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (677)
Q Consensus 381 ~knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I- 458 (677)
...+++|.|. |..|..++++|...+ ..|+++.++++..++...++.. .+.++.++.+|.++.++++++--
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G------~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAG------AKVVLASRRVERLKELRAEIEA--EGGAAHVVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHH
Confidence 4578888887 447889999998754 5688888888776655443211 12357789999999888766421
Q ss_pred -----ccccEEEEecC
Q 005788 459 -----SKARAIIVLAS 469 (677)
Q Consensus 459 -----~~A~aVIIltd 469 (677)
...|.+|-.+.
T Consensus 80 ~~~~~~~~d~li~~ag 95 (258)
T PRK06949 80 AETEAGTIDILVNNSG 95 (258)
T ss_pred HHHhcCCCCEEEECCC
Confidence 24677777665
No 83
>PLN02780 ketoreductase/ oxidoreductase
Probab=83.95 E-value=8 Score=41.70 Aligned_cols=61 Identities=16% Similarity=0.112 Sum_probs=41.5
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCC
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPL 448 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~ 448 (677)
...++|.|.+. .|..++++|...+ ..|++++++++.+++..+++...+.+.++..+..|.+
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G------~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKG------LNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC------CCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 46788889876 5889999998754 5788899999887776554322111234555666655
No 84
>PRK12829 short chain dehydrogenase; Provisional
Probab=83.93 E-value=4.5 Score=41.24 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=56.7
Q ss_pred ecCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 005788 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (677)
Q Consensus 381 ~knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-- 457 (677)
...+++|.|.+. .|..++++|.+.+ +.|++++++++..+...++.. +.++.++.+|.++++.++++-
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g------~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAG------ARVHVCDVSEAALAATAARLP----GAKVTATVADVADPAQVERVFDT 79 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHh----cCceEEEEccCCCHHHHHHHHHH
Confidence 457899998865 6888999998653 678888888776655443221 225678999999999876531
Q ss_pred ----cccccEEEEecCC
Q 005788 458 ----VSKARAIIVLASD 470 (677)
Q Consensus 458 ----I~~A~aVIIltdd 470 (677)
....|.||-.+..
T Consensus 80 ~~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 80 AVERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 1367888877653
No 85
>PRK05854 short chain dehydrogenase; Provisional
Probab=83.89 E-value=4 Score=43.68 Aligned_cols=82 Identities=21% Similarity=0.175 Sum_probs=56.8
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
...+||.|.+. .|..++++|...+ ..|+++.++.+..++.++++.....+.++.++..|..+.+..+++-
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G------~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~ 87 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAG------AEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQL 87 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHH
Confidence 46788888876 5889999998764 6788888888776666554422122346888999999988876542
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
...-|.+|-.+.
T Consensus 88 ~~~~~~iD~li~nAG 102 (313)
T PRK05854 88 RAEGRPIHLLINNAG 102 (313)
T ss_pred HHhCCCccEEEECCc
Confidence 234677776554
No 86
>PRK08267 short chain dehydrogenase; Provisional
Probab=83.66 E-value=4 Score=41.79 Aligned_cols=78 Identities=12% Similarity=-0.045 Sum_probs=56.3
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--Cc-
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV- 458 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA--~I- 458 (677)
.+++|.|.+. .|..++++|...+ ..|++++++++..++..... .+.++.++++|.++.+.++++ ++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~~~~ 71 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEG------WRVGAYDINEAGLAALAAEL----GAGNAWTGALDVTDRAAWDAALADFA 71 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4689999866 5888999998753 67888888887776654432 134688899999999888764 22
Q ss_pred ----ccccEEEEecCC
Q 005788 459 ----SKARAIIVLASD 470 (677)
Q Consensus 459 ----~~A~aVIIltdd 470 (677)
.+-|.+|-.+..
T Consensus 72 ~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 72 AATGGRLDVLFNNAGI 87 (260)
T ss_pred HHcCCCCCEEEECCCC
Confidence 234888877653
No 87
>PRK06138 short chain dehydrogenase; Provisional
Probab=83.49 E-value=4.4 Score=40.96 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=56.7
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
..+++|.|.+. .|..++++|.+.+ ..|+++.++.+..+....+.. .+..+.++.+|.++++.++++=
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~i 75 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREG------ARVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGSAEAVEALVDFV 75 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC------CeEEEecCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 45789998865 6889999998753 678888888776655444322 1345788999999998887641
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
..+.|.+|-.+..
T Consensus 76 ~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 76 AARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1367888876654
No 88
>PRK06101 short chain dehydrogenase; Provisional
Probab=83.46 E-value=3.6 Score=41.77 Aligned_cols=62 Identities=13% Similarity=0.051 Sum_probs=46.1
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA 456 (677)
+.++|.|.+. .|..++++|...+ ..|++++++++..++.... ..++.++.+|.++.+.++++
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G------~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~ 64 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQG------WQVIACGRNQSVLDELHTQ------SANIFTLAFDVTDHPGTKAA 64 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCC------CEEEEEECCHHHHHHHHHh------cCCCeEEEeeCCCHHHHHHH
Confidence 4588898765 5888999998653 6788899988776654331 23577889999999987764
No 89
>PRK07454 short chain dehydrogenase; Provisional
Probab=83.39 E-value=4.5 Score=40.84 Aligned_cols=79 Identities=19% Similarity=0.051 Sum_probs=54.0
Q ss_pred CeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 005788 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (677)
Q Consensus 383 nHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~---- 457 (677)
..++|.|. |..|..++++|.+.+ ..|++++++++..++..+.... .+.++.++.+|.++.+.+.++-
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAG------WDLALVARSQDALEALAAELRS--TGVKAAAYSIDLSNPEAIAPGIAELL 78 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--CCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 46788887 457889999998754 5788888887766554443211 1246788999999998775541
Q ss_pred --cccccEEEEecC
Q 005788 458 --VSKARAIIVLAS 469 (677)
Q Consensus 458 --I~~A~aVIIltd 469 (677)
..+.|.+|-.+.
T Consensus 79 ~~~~~id~lv~~ag 92 (241)
T PRK07454 79 EQFGCPDVLINNAG 92 (241)
T ss_pred HHcCCCCEEEECCC
Confidence 124677777664
No 90
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=83.29 E-value=9.5 Score=34.22 Aligned_cols=71 Identities=18% Similarity=0.139 Sum_probs=49.0
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~a 463 (677)
++.|+|.|..+...+..+..... +...+-++|.+++..+...+++ ++. . ..+.+.|.+.. +.|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~---~~~v~~v~d~~~~~~~~~~~~~-------~~~-~---~~~~~~ll~~~--~~D~ 65 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSP---DFEVVAVCDPDPERAEAFAEKY-------GIP-V---YTDLEELLADE--DVDA 65 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTT---TEEEEEEECSSHHHHHHHHHHT-------TSE-E---ESSHHHHHHHT--TESE
T ss_pred EEEEECCcHHHHHHHHHHHhcCC---CcEEEEEEeCCHHHHHHHHHHh-------ccc-c---hhHHHHHHHhh--cCCE
Confidence 58899999999988888886632 2245568899998887765543 222 1 23455554433 7999
Q ss_pred EEEecCC
Q 005788 464 IIVLASD 470 (677)
Q Consensus 464 VIIltdd 470 (677)
|++.+++
T Consensus 66 V~I~tp~ 72 (120)
T PF01408_consen 66 VIIATPP 72 (120)
T ss_dssp EEEESSG
T ss_pred EEEecCC
Confidence 9999974
No 91
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=83.22 E-value=4.5 Score=47.37 Aligned_cols=83 Identities=10% Similarity=0.036 Sum_probs=57.8
Q ss_pred ecCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc---c----cCCccEEEEEeCCCCHHH
Q 005788 381 EKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF---D----FMGTSVICRSGSPLILAD 452 (677)
Q Consensus 381 ~knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~---~----~~~~~V~~I~Gd~~~~e~ 452 (677)
..+.++|.|. |..|..++++|...+ +.|+++.++.+..+.....+.. + ....++.++.||..+.++
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G------~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLG------FRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 4567888887 557889999998754 6788888887766554332210 0 001357889999999998
Q ss_pred HhccCcccccEEEEecCC
Q 005788 453 LKKVSVSKARAIIVLASD 470 (677)
Q Consensus 453 L~rA~I~~A~aVIIltdd 470 (677)
++++ +..+|.||.....
T Consensus 153 I~~a-LggiDiVVn~AG~ 169 (576)
T PLN03209 153 IGPA-LGNASVVICCIGA 169 (576)
T ss_pred HHHH-hcCCCEEEEcccc
Confidence 8763 5678988887653
No 92
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.14 E-value=4.6 Score=40.76 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=57.1
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
...++|.|.+. .|..++++|.+.+ ..|++++++++..+....++.. +.++.++.+|..+++.++++-
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~ 75 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEG------ARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAA 75 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHH
Confidence 35788888754 6889999998654 5688999988776655443211 245788999999999987642
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
..+.|.||-.+..
T Consensus 76 ~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 76 LERFGSVDILVNNAGT 91 (251)
T ss_pred HHHhCCCCEEEECCCC
Confidence 2356888887753
No 93
>PRK07063 short chain dehydrogenase; Provisional
Probab=83.03 E-value=4.8 Score=41.18 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=56.1
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
...++|.|.+. .|..++++|.+.+ ..|++++++++..++..+++.....+.++.++.+|.++++.++++-
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G------~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREG------AAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAA 80 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHH
Confidence 35688888765 5888999998754 6788888888777665554321111346778899999988876541
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
....|.+|-.+.
T Consensus 81 ~~~~g~id~li~~ag 95 (260)
T PRK07063 81 EEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHhCCCcEEEECCC
Confidence 135677777664
No 94
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=82.97 E-value=4.3 Score=38.26 Aligned_cols=73 Identities=21% Similarity=0.172 Sum_probs=50.0
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..+++|+|.|..+..+++.|...+ ...|.+.+++++..++..+++.. . .+..+..+.+.+ +++|
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-----~~~v~v~~r~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~----~~~~ 82 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-----AAKIVIVNRTLEKAKALAERFGE-----L--GIAIAYLDLEEL----LAEA 82 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-----CCEEEEEcCCHHHHHHHHHHHhh-----c--ccceeecchhhc----cccC
Confidence 578999999999999999998652 25788899998877765543211 0 011122233222 7899
Q ss_pred cEEEEecCC
Q 005788 462 RAIIVLASD 470 (677)
Q Consensus 462 ~aVIIltdd 470 (677)
|.||..++.
T Consensus 83 Dvvi~~~~~ 91 (155)
T cd01065 83 DLIINTTPV 91 (155)
T ss_pred CEEEeCcCC
Confidence 999999976
No 95
>PRK07062 short chain dehydrogenase; Provisional
Probab=82.96 E-value=4.8 Score=41.32 Aligned_cols=82 Identities=20% Similarity=0.176 Sum_probs=55.1
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA---- 456 (677)
...++|.|.+. .|..++++|...+ ..|++++++++..++..++......+.++.++.+|.++.+.++++
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAG------ASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAV 81 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 45788888765 6889999998754 678888888776665544332111234677889999998887653
Q ss_pred --CcccccEEEEecC
Q 005788 457 --SVSKARAIIVLAS 469 (677)
Q Consensus 457 --~I~~A~aVIIltd 469 (677)
.....|.+|-.+.
T Consensus 82 ~~~~g~id~li~~Ag 96 (265)
T PRK07062 82 EARFGGVDMLVNNAG 96 (265)
T ss_pred HHhcCCCCEEEECCC
Confidence 1234577776664
No 96
>PRK06940 short chain dehydrogenase; Provisional
Probab=82.47 E-value=4.4 Score=42.33 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=55.2
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~---- 457 (677)
+..+||.|.|..|..++++|. . +..|++++++++..++..+++.. .+.++.++.+|.++++.++++-
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~------G~~Vv~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-A------GKKVLLADYNEENLEAAAKTLRE--AGFDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-C------CCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 567888898888999999984 3 36788888887766655443321 1346778999999998876542
Q ss_pred -cccccEEEEecCC
Q 005788 458 -VSKARAIIVLASD 470 (677)
Q Consensus 458 -I~~A~aVIIltdd 470 (677)
...-|.+|-.+.-
T Consensus 73 ~~g~id~li~nAG~ 86 (275)
T PRK06940 73 TLGPVTGLVHTAGV 86 (275)
T ss_pred hcCCCCEEEECCCc
Confidence 1246777776653
No 97
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=82.29 E-value=15 Score=34.13 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=28.7
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
+.+|+|+|.|..|..+++.|...+- ..++++|.|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-----~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-----GKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-----SEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-----CceeecCCcc
Confidence 4689999999999999999998763 4688888774
No 98
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=82.11 E-value=13 Score=32.07 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=49.2
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLi-D~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~ 462 (677)
+|-|+|.|+.|..+++.|...+. ..+.|.++ +++++..++..+++ .+.+...+ ..+.+ ++||
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~---~~~~v~~~~~r~~~~~~~~~~~~-------~~~~~~~~--~~~~~-----~~ad 63 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI---KPHEVIIVSSRSPEKAAELAKEY-------GVQATADD--NEEAA-----QEAD 63 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS----GGEEEEEEESSHHHHHHHHHHC-------TTEEESEE--HHHHH-----HHTS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CceeEEeeccCcHHHHHHHHHhh-------ccccccCC--hHHhh-----ccCC
Confidence 46789999999999999987642 12456644 99999888765542 12222111 22332 3889
Q ss_pred EEEEecCCCCCccchHHHHHHHH
Q 005788 463 AIIVLASDENADQSDARALRVVL 485 (677)
Q Consensus 463 aVIIltdd~~~~~sDa~NI~i~L 485 (677)
.||+..+. .+...+..-+
T Consensus 64 vvilav~p-----~~~~~v~~~i 81 (96)
T PF03807_consen 64 VVILAVKP-----QQLPEVLSEI 81 (96)
T ss_dssp EEEE-S-G-----GGHHHHHHHH
T ss_pred EEEEEECH-----HHHHHHHHHH
Confidence 99998874 4544544333
No 99
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.02 E-value=6.1 Score=39.81 Aligned_cols=80 Identities=19% Similarity=0.161 Sum_probs=55.6
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.++++|.|.+. .|..++++|...+ ..|++++++++..++...+... .+.++.++.+|.++++.++++=
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G------~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEG------VNVGLLARTEENLKAVAEEVEA--YGVKVVIATADVSDYEEVTAAIEQL 78 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHH--hCCeEEEEECCCCCHHHHHHHHHHH
Confidence 46789998765 5888999998653 6788888887766554443311 1346788899999998876542
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
....|.+|..+.
T Consensus 79 ~~~~~~id~vi~~ag 93 (239)
T PRK07666 79 KNELGSIDILINNAG 93 (239)
T ss_pred HHHcCCccEEEEcCc
Confidence 135788887664
No 100
>PRK06482 short chain dehydrogenase; Provisional
Probab=82.01 E-value=6.9 Score=40.49 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=56.0
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.++++|.|.+. .|..++++|.+.+ ..|+++.++++.++...... +.++.++.+|.++.+.++++-
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g------~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 70 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARG------DRVAATVRRPDALDDLKARY-----GDRLWVLQLDVTDSAAVRAVVDRA 70 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHhc-----cCceEEEEccCCCHHHHHHHHHHH
Confidence 35789999754 6889999998764 57888888887766543321 236788999999998877631
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
....|.||-++..
T Consensus 71 ~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 71 FAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHcCCCCEEEECCCC
Confidence 2356888887754
No 101
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=81.87 E-value=3.6 Score=45.78 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=29.6
Q ss_pred cCCCHHHHHHHHHHhhhccCCC--C-c-cCCCCCeEEeeeehhhh
Q 005788 310 SDSSFAEALWLSWTFVADSGNH--A-D-RVGTGPRIVSVSISSGG 350 (677)
Q Consensus 310 E~~s~~dAlw~t~vTiTTvGyg--~-~-p~t~~gRi~~v~lil~G 350 (677)
.+.++.|+++-++..+.|+|.+ . . ..+..++++.+++|+.|
T Consensus 345 ~~~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 345 SGYDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILIVLMFIG 389 (390)
T ss_pred cCCCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence 3799999999999999999984 3 1 24445676655555444
No 102
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=81.71 E-value=3.5 Score=44.30 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=63.1
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcc--cCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFD--FMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~--~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
+|.|+|.|..|..++..|...+. ...++++|.+++..+....++... +....+.+ .+ .+.++ +.+|
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~----~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i-~~--~~~~~-----l~~a 69 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGI----ADELVLIDINEEKAEGEALDLEDALAFLPSPVKI-KA--GDYSD-----CKDA 69 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC----CCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEE-Ec--CCHHH-----hCCC
Confidence 79999999999999999876531 247999999887665554433111 11122222 22 23333 4789
Q ss_pred cEEEEecCCCC-C--ccch--HHHHHH----HHHHhhhcCCCCceEEEEeCCCCCH
Q 005788 462 RAIIVLASDEN-A--DQSD--ARALRV----VLSLTGVKEGLRGHVVVEMSDLDNE 508 (677)
Q Consensus 462 ~aVIIltdd~~-~--~~sD--a~NI~i----~Lsar~l~p~l~~~IIArv~d~e~~ 508 (677)
|.||+++.... + +..| ..|+.+ +-.+++.+| ++ ++.-+.||-+.
T Consensus 70 DIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~--~~-~vivvsNP~d~ 122 (306)
T cd05291 70 DIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF--DG-IFLVASNPVDV 122 (306)
T ss_pred CEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC--Ce-EEEEecChHHH
Confidence 99999997621 1 1112 224433 233455555 33 45555677654
No 103
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=81.65 E-value=5.4 Score=40.62 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=53.7
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc------
Q 005788 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV------ 456 (677)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA------ 456 (677)
.++|.|.+. .|..++++|...+ ..|++++++++.++...+.. +.++.++.+|..+.+.++++
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~~~~~~~~~ 70 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQG------HKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLPA 70 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHHHHHHHHHH
Confidence 578888755 6888999998654 67888888887766554322 23677899999999887653
Q ss_pred CcccccEEEEecC
Q 005788 457 SVSKARAIIVLAS 469 (677)
Q Consensus 457 ~I~~A~aVIIltd 469 (677)
.....|.+|..+.
T Consensus 71 ~~~~id~vi~~ag 83 (248)
T PRK10538 71 EWRNIDVLVNNAG 83 (248)
T ss_pred HcCCCCEEEECCC
Confidence 1135788887653
No 104
>PRK12939 short chain dehydrogenase; Provisional
Probab=81.58 E-value=6.9 Score=39.41 Aligned_cols=81 Identities=16% Similarity=0.079 Sum_probs=56.2
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.++++|.|.+ ..|..++++|...+ +.|++++++++..+...+++.. .+.++.++.+|..+++.++++-
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAG------ATVAFNDGLAAEARELAAALEA--AGGRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4788999875 46889999998754 5677778887766655443311 1346788899999998876532
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
..+.|.+|-.+..
T Consensus 79 ~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 79 AAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1367888877653
No 105
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=81.51 E-value=6.4 Score=42.59 Aligned_cols=80 Identities=14% Similarity=0.045 Sum_probs=56.1
Q ss_pred ecCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 005788 381 EKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (677)
Q Consensus 381 ~knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~ 459 (677)
...+|+|.|. |-.|..++++|...+ ..|++++++.+..+....... .+.++.++.||..+.+.++++ ++
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G------~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~-~~ 78 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRG------YTVHATLRDPAKSLHLLSKWK---EGDRLRLFRADLQEEGSFDEA-VK 78 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC------CEEEEEeCChHHHHHHHHhhc---cCCeEEEEECCCCCHHHHHHH-Hc
Confidence 4568999996 457899999998754 567776666654443332211 124678899999999888775 44
Q ss_pred cccEEEEecCC
Q 005788 460 KARAIIVLASD 470 (677)
Q Consensus 460 ~A~aVIIltdd 470 (677)
+.|.||-++..
T Consensus 79 ~~d~Vih~A~~ 89 (353)
T PLN02896 79 GCDGVFHVAAS 89 (353)
T ss_pred CCCEEEECCcc
Confidence 67888888865
No 106
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=81.45 E-value=17 Score=36.58 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=30.0
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCC
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d 420 (677)
.+-+|+|+|.|..|..+++.|...+- ..++++|.|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv-----~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGV-----GTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEecCC
Confidence 57899999999999999999998752 368888887
No 107
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.40 E-value=5.6 Score=39.93 Aligned_cols=81 Identities=16% Similarity=0.130 Sum_probs=54.9
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc-
Q 005788 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (677)
Q Consensus 382 knHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLi-D~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I- 458 (677)
.++++|.|.+ ..|..++++|...+ ..|+++ +++++..+...+.... .+.++.++.+|..+.+.++++--
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g------~~v~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~ 76 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEG------AKVVIAYDINEEAAQELLEEIKE--EGGDAIAVKADVSSEEDVENLVEQ 76 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC------CEEEEEcCCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHH
Confidence 3578999874 57889999997653 567777 8877666554443211 13467889999999998766421
Q ss_pred -----ccccEEEEecCC
Q 005788 459 -----SKARAIIVLASD 470 (677)
Q Consensus 459 -----~~A~aVIIltdd 470 (677)
...|.+|..+..
T Consensus 77 ~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 77 IVEKFGKIDILVNNAGI 93 (247)
T ss_pred HHHHhCCCCEEEECCCc
Confidence 256788876643
No 108
>PRK10637 cysG siroheme synthase; Provisional
Probab=81.36 E-value=12 Score=42.51 Aligned_cols=85 Identities=15% Similarity=0.025 Sum_probs=56.0
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLi-D~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~ 459 (677)
...+++|+|.|+++..=++.|...+ ..|+++ ..-.+++.++.. ..++.++..+. .+++| +
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~g------a~v~visp~~~~~~~~l~~-------~~~i~~~~~~~-~~~dl-----~ 71 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAG------ARLTVNALAFIPQFTAWAD-------AGMLTLVEGPF-DESLL-----D 71 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC------CEEEEEcCCCCHHHHHHHh-------CCCEEEEeCCC-ChHHh-----C
Confidence 4689999999999998888888764 344444 333344444322 23566777665 34555 5
Q ss_pred cccEEEEecCCCCCccchHHHHHHHHHHhhh
Q 005788 460 KARAIIVLASDENADQSDARALRVVLSLTGV 490 (677)
Q Consensus 460 ~A~aVIIltdd~~~~~sDa~NI~i~Lsar~l 490 (677)
.|+.||+.++| .+.|-.+.-.++..
T Consensus 72 ~~~lv~~at~d------~~~n~~i~~~a~~~ 96 (457)
T PRK10637 72 TCWLAIAATDD------DAVNQRVSEAAEAR 96 (457)
T ss_pred CCEEEEECCCC------HHHhHHHHHHHHHc
Confidence 68888888864 56777776666653
No 109
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=81.27 E-value=5.5 Score=41.54 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=50.2
Q ss_pred EEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC-----c
Q 005788 385 ILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-----V 458 (677)
Q Consensus 385 III~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-----I 458 (677)
|+|.|. |..|..++++|.+.+ +.|.+..++++... ..++..+.||..|++.|.++= +
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g------~~V~~~~R~~~~~~-----------~~~~~~~~~d~~d~~~l~~a~~~~~~~ 64 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAAS------VPFLVASRSSSSSA-----------GPNEKHVKFDWLDEDTWDNPFSSDDGM 64 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCC------CcEEEEeCCCcccc-----------CCCCccccccCCCHHHHHHHHhcccCc
Confidence 678887 778999999998754 56777777765321 124556789999999998752 3
Q ss_pred cc-ccEEEEecCC
Q 005788 459 SK-ARAIIVLASD 470 (677)
Q Consensus 459 ~~-A~aVIIltdd 470 (677)
+. ++.++.++..
T Consensus 65 ~g~~d~v~~~~~~ 77 (285)
T TIGR03649 65 EPEISAVYLVAPP 77 (285)
T ss_pred CCceeEEEEeCCC
Confidence 45 8888877754
No 110
>PRK05993 short chain dehydrogenase; Provisional
Probab=81.15 E-value=4.5 Score=42.17 Aligned_cols=74 Identities=18% Similarity=0.072 Sum_probs=52.0
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c
Q 005788 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (677)
Q Consensus 382 knHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--I 458 (677)
...++|.|.+ ..|..++++|...+ ..|++++++++.++++.+ .++.++.+|.++.+.++++- +
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G------~~Vi~~~r~~~~~~~l~~--------~~~~~~~~Dl~d~~~~~~~~~~~ 69 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDG------WRVFATCRKEEDVAALEA--------EGLEAFQLDYAEPESIAALVAQV 69 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHH--------CCceEEEccCCCHHHHHHHHHHH
Confidence 3578999984 46889999998653 678888888877665422 24677899999988766531 1
Q ss_pred -----ccccEEEEecC
Q 005788 459 -----SKARAIIVLAS 469 (677)
Q Consensus 459 -----~~A~aVIIltd 469 (677)
.+-|.+|-.+.
T Consensus 70 ~~~~~g~id~li~~Ag 85 (277)
T PRK05993 70 LELSGGRLDALFNNGA 85 (277)
T ss_pred HHHcCCCccEEEECCC
Confidence 24577776653
No 111
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=81.08 E-value=5.9 Score=40.47 Aligned_cols=77 Identities=12% Similarity=0.121 Sum_probs=54.0
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
...++|.|.+. .|..++++|.+.+ ..|++++++.+..++..++. +..+.++.+|.++++.++++--
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G------~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEG------ARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRIVAAA 74 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC------CEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 35688888754 6889999998764 67889999887776654432 2357778899998888765421
Q ss_pred ----ccccEEEEecC
Q 005788 459 ----SKARAIIVLAS 469 (677)
Q Consensus 459 ----~~A~aVIIltd 469 (677)
...|.+|-.+.
T Consensus 75 ~~~~~~id~li~~ag 89 (257)
T PRK07067 75 VERFGGIDILFNNAA 89 (257)
T ss_pred HHHcCCCCEEEECCC
Confidence 24577776553
No 112
>PRK06172 short chain dehydrogenase; Provisional
Probab=81.01 E-value=6.1 Score=40.16 Aligned_cols=80 Identities=18% Similarity=0.096 Sum_probs=53.8
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--Cc
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA--~I 458 (677)
...++|.|.+. .|..++++|...+ ..|++++++++..++..+++.. .+.++.++.+|.++.+.++++ .+
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~i~~~~~~~ 78 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREG------AKVVVADRDAAGGEETVALIRE--AGGEALFVACDVTRDAEVKALVEQT 78 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 46788888765 6889999998754 5788888887766655443211 134578889999998877653 11
Q ss_pred ----ccccEEEEecC
Q 005788 459 ----SKARAIIVLAS 469 (677)
Q Consensus 459 ----~~A~aVIIltd 469 (677)
..-|.+|-.+.
T Consensus 79 ~~~~g~id~li~~ag 93 (253)
T PRK06172 79 IAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHhCCCCEEEECCC
Confidence 13366766553
No 113
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=80.87 E-value=6 Score=40.33 Aligned_cols=81 Identities=19% Similarity=0.101 Sum_probs=55.5
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.++++|.|.+. .|..++++|.+.+ ..|++.+++++..++..+++.. .+.++.++.+|.++++.++++-
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~i~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAG------AEVILNGRDPAKLAAAAESLKG--QGLSAHALAFDVTDHDAVRAAIDAF 81 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHh--cCceEEEEEccCCCHHHHHHHHHHH
Confidence 46788888754 6889999998754 5788888888766655443311 1235788899999988877642
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
...-|.+|-.+..
T Consensus 82 ~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 82 EAEIGPIDILVNNAGM 97 (255)
T ss_pred HHhcCCCCEEEECCCC
Confidence 1235777776653
No 114
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=80.86 E-value=5.5 Score=40.89 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=53.5
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.+.++|.|.+. .|..++++|...+ ..|++++++++..++..++. +.++.++.+|..+.+.++++-
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEG------ARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADNQRAVDQT 74 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHH
Confidence 45788898865 6888999998764 67888898887776654432 235677889999888776531
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
..+.|.+|-.+.
T Consensus 75 ~~~~g~id~li~~ag 89 (263)
T PRK06200 75 VDAFGKLDCFVGNAG 89 (263)
T ss_pred HHhcCCCCEEEECCC
Confidence 124566665553
No 115
>PRK08643 acetoin reductase; Validated
Probab=80.64 E-value=6.2 Score=40.20 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=54.5
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.+.++|.|.+. .|..+++.|...+ ..|++++++++..++...++.. .+.++.++.+|.++++.++++-
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDG------FKVAIVDYNEETAQAAADKLSK--DGGKAIAVKADVSDRDQVFAAVRQV 73 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 35788888776 5888999998653 5788888887666555443211 1346778899999988765521
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
..+.|.+|-.+.
T Consensus 74 ~~~~~~id~vi~~ag 88 (256)
T PRK08643 74 VDTFGDLNVVVNNAG 88 (256)
T ss_pred HHHcCCCCEEEECCC
Confidence 135677777764
No 116
>PRK08017 oxidoreductase; Provisional
Probab=80.51 E-value=4.9 Score=40.80 Aligned_cols=59 Identities=14% Similarity=-0.035 Sum_probs=43.5
Q ss_pred CeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 005788 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (677)
Q Consensus 383 nHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~r 455 (677)
+.++|.|. |..|..++++|...+ ..|++++++++.++...+ .++.++.+|..+.+.+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g------~~v~~~~r~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~ 62 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG------YRVLAACRKPDDVARMNS--------LGFTGILLDLDDPESVER 62 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHhHHHHh--------CCCeEEEeecCCHHHHHH
Confidence 46999998 678999999998653 568888888776654321 245678889888877654
No 117
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=80.49 E-value=7.3 Score=39.17 Aligned_cols=81 Identities=15% Similarity=0.071 Sum_probs=55.4
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c
Q 005788 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (677)
Q Consensus 382 knHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--I 458 (677)
...++|.|.+ ..|..++++|.+.+ ..|+++.++++..+.....+.. .+.++.++.+|..+.+.++++- +
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g------~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG------AEVIVVDICGDDAAATAELVEA--AGGKARARQVDVRDRAALKAAVAAG 77 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 3578888864 46889999998754 5688888886655544333211 1235788999999998887742 1
Q ss_pred ----ccccEEEEecCC
Q 005788 459 ----SKARAIIVLASD 470 (677)
Q Consensus 459 ----~~A~aVIIltdd 470 (677)
...+.||-.+..
T Consensus 78 ~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 78 VEDFGRLDILVANAGI 93 (251)
T ss_pred HHHhCCCCEEEECCCC
Confidence 267888887744
No 118
>PLN02650 dihydroflavonol-4-reductase
Probab=80.48 E-value=5.8 Score=42.81 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=52.9
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 382 knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
+.+|+|.|. |-.|..++++|...+ ..|++..++.+..+.........-...++.++.||..+.+.+.++ ++.
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~-~~~ 77 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERG------YTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDA-IRG 77 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCC------CEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHH-HhC
Confidence 567999997 457899999998764 566665555443332211100000012578899999999888764 456
Q ss_pred ccEEEEecCC
Q 005788 461 ARAIIVLASD 470 (677)
Q Consensus 461 A~aVIIltdd 470 (677)
+|.||-++..
T Consensus 78 ~d~ViH~A~~ 87 (351)
T PLN02650 78 CTGVFHVATP 87 (351)
T ss_pred CCEEEEeCCC
Confidence 8899888754
No 119
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=80.30 E-value=5.2 Score=43.14 Aligned_cols=73 Identities=16% Similarity=0.065 Sum_probs=49.6
Q ss_pred CeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCC-CHHHHhccCccc
Q 005788 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPL-ILADLKKVSVSK 460 (677)
Q Consensus 383 nHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~-~~e~L~rA~I~~ 460 (677)
.+|+|.|. |-.|..|+++|...+ ++.|+.++++.+....... ..++.++.||.. +.+.+.++ +++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~-----~~~V~~~~r~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~-~~~ 68 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT-----DWEVYGMDMQTDRLGDLVN-------HPRMHFFEGDITINKEWIEYH-VKK 68 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC-----CCeEEEEeCcHHHHHHhcc-------CCCeEEEeCCCCCCHHHHHHH-HcC
Confidence 36999997 778999999998642 2567777776543332211 235788999997 66666553 457
Q ss_pred ccEEEEec
Q 005788 461 ARAIIVLA 468 (677)
Q Consensus 461 A~aVIIlt 468 (677)
+|.||=++
T Consensus 69 ~d~ViH~a 76 (347)
T PRK11908 69 CDVILPLV 76 (347)
T ss_pred CCEEEECc
Confidence 89888543
No 120
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=80.19 E-value=6.8 Score=39.90 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=54.3
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA---- 456 (677)
.+.++|.|.+. .|..++++|.+.+ ..|++++++++..++..+++.. .+.++.++.+|..+++.+.++
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAG------AHVLVNGRNAATLEAAVAALRA--AGGAAEALAFDIADEEAVAAAFARI 82 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC------CeEEEEeCCHHHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHH
Confidence 46788888765 5888999998653 6788899887766655443321 134578899999999887653
Q ss_pred --CcccccEEEEecC
Q 005788 457 --SVSKARAIIVLAS 469 (677)
Q Consensus 457 --~I~~A~aVIIltd 469 (677)
...+.+.+|-.+.
T Consensus 83 ~~~~~~id~vi~~ag 97 (256)
T PRK06124 83 DAEHGRLDILVNNVG 97 (256)
T ss_pred HHhcCCCCEEEECCC
Confidence 1124467776554
No 121
>PRK09242 tropinone reductase; Provisional
Probab=80.17 E-value=6.8 Score=39.97 Aligned_cols=81 Identities=15% Similarity=0.082 Sum_probs=54.4
Q ss_pred CeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 005788 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (677)
Q Consensus 383 nHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~---- 457 (677)
+.++|.|.+ ..|..++++|...+ ..|++++++.+..++..+++.....+.++.++.+|..+++.++++-
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G------~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLG------ADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 467788875 46889999998754 5788888888777665544322112346788899999987765421
Q ss_pred --cccccEEEEecC
Q 005788 458 --VSKARAIIVLAS 469 (677)
Q Consensus 458 --I~~A~aVIIltd 469 (677)
..+-|.+|..+.
T Consensus 84 ~~~g~id~li~~ag 97 (257)
T PRK09242 84 DHWDGLHILVNNAG 97 (257)
T ss_pred HHcCCCCEEEECCC
Confidence 124577777665
No 122
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=80.06 E-value=6.7 Score=40.39 Aligned_cols=81 Identities=16% Similarity=0.061 Sum_probs=56.3
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
..+++|.|.+. .|..++++|...+ ..|++.+++++..++..+++.. .+.++.++.+|.++++.++++-
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G------~~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAG------ATIVFNDINQELVDKGLAAYRE--LGIEAHGYVCDVTDEDGVQAMVSQI 81 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 45788888866 5888999998754 5678888887776665543321 1346788999999998876632
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
...-|.+|..+.-
T Consensus 82 ~~~~~~id~li~~ag~ 97 (265)
T PRK07097 82 EKEVGVIDILVNNAGI 97 (265)
T ss_pred HHhCCCCCEEEECCCC
Confidence 2346788776643
No 123
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=79.76 E-value=6 Score=42.03 Aligned_cols=82 Identities=13% Similarity=0.053 Sum_probs=52.5
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 382 knHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
...++|.|.+ -.|..++++|...+ +.|+++.++++..+.........-...++.++.||.++.+.++++ +++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~ 77 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRG------YTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA-IDG 77 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC------CEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH-HcC
Confidence 3578999874 46889999998764 566665555443322111000000113578899999999988765 456
Q ss_pred ccEEEEecCC
Q 005788 461 ARAIIVLASD 470 (677)
Q Consensus 461 A~aVIIltdd 470 (677)
.|.||-++..
T Consensus 78 ~d~vih~A~~ 87 (325)
T PLN02989 78 CETVFHTASP 87 (325)
T ss_pred CCEEEEeCCC
Confidence 8888888864
No 124
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=79.71 E-value=7.1 Score=39.85 Aligned_cols=82 Identities=11% Similarity=0.044 Sum_probs=54.3
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I--- 458 (677)
+.++|.|.+. .|..+++.|.+.+ ..|++++++.+..++..+++.....+..+.++.+|.++++.++++--
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g------~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~ 76 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEG------YRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVD 76 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHH
Confidence 4588888765 5888999998653 67888888876665544332111111357889999999888765421
Q ss_pred ---ccccEEEEecCC
Q 005788 459 ---SKARAIIVLASD 470 (677)
Q Consensus 459 ---~~A~aVIIltdd 470 (677)
...|.+|-.+..
T Consensus 77 ~~~~~id~vv~~ag~ 91 (259)
T PRK12384 77 EIFGRVDLLVYNAGI 91 (259)
T ss_pred HHcCCCCEEEECCCc
Confidence 245777776643
No 125
>PRK06500 short chain dehydrogenase; Provisional
Probab=79.61 E-value=7.6 Score=39.14 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=52.8
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA---- 456 (677)
..+++|.|.+. .|..++++|...+ ..|++++++++..++..++. +.++.++++|..+.+.+.++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g------~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEG------ARVAITGRDPASLEAARAEL-----GESALVIRADAGDVAAQKALAQAL 74 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEecCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHH
Confidence 45789999755 6889999998754 57888888877666554432 33567788998887765432
Q ss_pred --CcccccEEEEecC
Q 005788 457 --SVSKARAIIVLAS 469 (677)
Q Consensus 457 --~I~~A~aVIIltd 469 (677)
...+.|.+|-.+.
T Consensus 75 ~~~~~~id~vi~~ag 89 (249)
T PRK06500 75 AEAFGRLDAVFINAG 89 (249)
T ss_pred HHHhCCCCEEEECCC
Confidence 1134577776654
No 126
>PRK08309 short chain dehydrogenase; Provisional
Probab=79.53 E-value=7.6 Score=38.46 Aligned_cols=65 Identities=17% Similarity=0.029 Sum_probs=45.0
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA 456 (677)
++++|.|.+..+..++++|...+ ..|++..++++..++...... ....+.++.+|..+++.++++
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G------~~V~v~~R~~~~~~~l~~~l~---~~~~i~~~~~Dv~d~~sv~~~ 65 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKG------FHVSVIARREVKLENVKREST---TPESITPLPLDYHDDDALKLA 65 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCc------CEEEEEECCHHHHHHHHHHhh---cCCcEEEEEccCCCHHHHHHH
Confidence 36899998767778899998754 577777888877665443221 123567778888888776653
No 127
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=79.52 E-value=23 Score=37.82 Aligned_cols=123 Identities=15% Similarity=0.254 Sum_probs=70.0
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..+++|+|+|..|..+++.|...+ ..|++.+++++..+...+ .+.. +...++|.+ -+.+|
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G------~~V~v~~R~~~~~~~~~~--------~g~~-----~~~~~~l~~-~l~~a 210 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALG------ARVFVGARSSADLARITE--------MGLI-----PFPLNKLEE-KVAEI 210 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHH--------CCCe-----eecHHHHHH-HhccC
Confidence 468999999999999999998653 578889988876554321 1111 123344443 25689
Q ss_pred cEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEe-CCCCC--HHHHHHcCCCeeE-----EEechHHHHHHHH
Q 005788 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEM-SDLDN--EPLVKLVGGELIE-----TVVAHDVIGRLMI 533 (677)
Q Consensus 462 ~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv-~d~e~--~~~l~~aGad~Ve-----vVv~~el~a~lLa 533 (677)
|.||..++. . +...-.+..+.+ . .++.-+ .+|.- -+.+++.|...+- -.+.+..++++++
T Consensus 211 DiVint~P~------~---ii~~~~l~~~k~--~-aliIDlas~Pg~tdf~~Ak~~G~~a~~~~glPg~~ap~ta~~i~~ 278 (287)
T TIGR02853 211 DIVINTIPA------L---VLTADVLSKLPK--H-AVIIDLASKPGGTDFEYAKKRGIKALLAPGLPGIVAPKTAGKILA 278 (287)
T ss_pred CEEEECCCh------H---HhCHHHHhcCCC--C-eEEEEeCcCCCCCCHHHHHHCCCEEEEeCCCCcccCchhHHHHHH
Confidence 999998853 1 111112233443 2 244433 33422 2567778865220 0223455677776
Q ss_pred HHh
Q 005788 534 QCA 536 (677)
Q Consensus 534 q~a 536 (677)
+.+
T Consensus 279 ~~~ 281 (287)
T TIGR02853 279 NVL 281 (287)
T ss_pred HHH
Confidence 654
No 128
>PRK06182 short chain dehydrogenase; Validated
Probab=79.49 E-value=5.6 Score=41.15 Aligned_cols=75 Identities=21% Similarity=0.054 Sum_probs=54.3
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 382 knHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
...++|.|.+ ..|..++++|...+ +.|++++++++.+++... .++.++.+|.++.+.++++--
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G------~~V~~~~r~~~~l~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~ 68 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQG------YTVYGAARRVDKMEDLAS--------LGVHPLSLDVTDEASIKAAVDTI 68 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHh--------CCCeEEEeeCCCHHHHHHHHHHH
Confidence 3578999974 46889999998754 678888888877654322 246788999999998866421
Q ss_pred ----ccccEEEEecCC
Q 005788 459 ----SKARAIIVLASD 470 (677)
Q Consensus 459 ----~~A~aVIIltdd 470 (677)
...|.+|-.+.-
T Consensus 69 ~~~~~~id~li~~ag~ 84 (273)
T PRK06182 69 IAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHhcCCCCEEEECCCc
Confidence 256888877653
No 129
>PRK08339 short chain dehydrogenase; Provisional
Probab=79.33 E-value=7.4 Score=40.30 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=54.0
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I--- 458 (677)
..++|.|.+. .|..++++|.+++ ..|++++++++..++..+++.. ..+.++.++.+|.++++.++++--
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAG------ADVILLSRNEENLKKAREKIKS-ESNVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh-hcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 4578888765 6889999998764 5788889888776665443311 113467889999999988765411
Q ss_pred --ccccEEEEecC
Q 005788 459 --SKARAIIVLAS 469 (677)
Q Consensus 459 --~~A~aVIIltd 469 (677)
..-|.+|..+.
T Consensus 82 ~~g~iD~lv~nag 94 (263)
T PRK08339 82 NIGEPDIFFFSTG 94 (263)
T ss_pred hhCCCcEEEECCC
Confidence 23466665553
No 130
>PRK05866 short chain dehydrogenase; Provisional
Probab=79.29 E-value=6.9 Score=41.43 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=55.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
...++|.|.+. .|..++++|...+ ..|++++++++.+++..++... .+.++.++.+|.++.+.+.++-
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G------~~Vi~~~R~~~~l~~~~~~l~~--~~~~~~~~~~Dl~d~~~v~~~~~~~ 111 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRG------ATVVAVARREDLLDAVADRITR--AGGDAMAVPCDLSDLDAVDALVADV 111 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 36788888754 6889999998653 6788899888777665443311 1235678899999988765531
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
....|.+|-.+..
T Consensus 112 ~~~~g~id~li~~AG~ 127 (293)
T PRK05866 112 EKRIGGVDILINNAGR 127 (293)
T ss_pred HHHcCCCCEEEECCCC
Confidence 2356787776643
No 131
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=79.26 E-value=5.5 Score=42.10 Aligned_cols=81 Identities=17% Similarity=0.079 Sum_probs=51.3
Q ss_pred CeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 383 nHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..|+|.|. |-.|..++++|...+ +.|+++.++.+...........+-...++.++.||..+.+.+.++ ++++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~ 77 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG------YTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV-VDGC 77 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC------CEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-HcCC
Confidence 46899996 567999999998764 566655555432211100000000123678899999998887664 4468
Q ss_pred cEEEEecCC
Q 005788 462 RAIIVLASD 470 (677)
Q Consensus 462 ~aVIIltdd 470 (677)
|.||-++..
T Consensus 78 d~Vih~A~~ 86 (322)
T PLN02662 78 EGVFHTASP 86 (322)
T ss_pred CEEEEeCCc
Confidence 999888854
No 132
>PRK06197 short chain dehydrogenase; Provisional
Probab=79.22 E-value=6.4 Score=41.60 Aligned_cols=82 Identities=18% Similarity=0.120 Sum_probs=55.7
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
...++|.|.+. .|..++++|...+ ..|+++.++++..++..+++.....+.++.++.+|..+.+.++++-
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G------~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 89 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKG------AHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADAL 89 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHH
Confidence 45788888754 6889999998764 5678888887665554433321112346788999999999876641
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
..+.|.+|-.+.
T Consensus 90 ~~~~~~iD~li~nAg 104 (306)
T PRK06197 90 RAAYPRIDLLINNAG 104 (306)
T ss_pred HhhCCCCCEEEECCc
Confidence 235688887764
No 133
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=79.16 E-value=7.5 Score=39.34 Aligned_cols=80 Identities=15% Similarity=0.020 Sum_probs=56.2
Q ss_pred CeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 005788 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (677)
Q Consensus 383 nHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I--- 458 (677)
.+++|.|.+ ..|..++++|...+ ..|++++++++..+....+... .+.++.++.+|..+++.++++--
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEG------AKVVIADLNDEAAAAAAEALQK--AGGKAIGVAMDVTDEEAINAGIDYAV 76 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 579999864 46889999998753 6788888887766655443211 13467889999999998866421
Q ss_pred ---ccccEEEEecCC
Q 005788 459 ---SKARAIIVLASD 470 (677)
Q Consensus 459 ---~~A~aVIIltdd 470 (677)
...|.+|-.+..
T Consensus 77 ~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 77 ETFGGVDILVNNAGI 91 (258)
T ss_pred HHcCCCCEEEECCCC
Confidence 256888876643
No 134
>PLN02427 UDP-apiose/xylose synthase
Probab=79.01 E-value=6.3 Score=43.25 Aligned_cols=81 Identities=12% Similarity=0.011 Sum_probs=54.9
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 382 knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
..+|+|.|. |-.|..++++|...+ ++.|+.++++.+..+..... .......++.++.||..+.+.++++ ++.
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~-----g~~V~~l~r~~~~~~~l~~~-~~~~~~~~~~~~~~Dl~d~~~l~~~-~~~ 86 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTET-----PHKVLALDVYNDKIKHLLEP-DTVPWSGRIQFHRINIKHDSRLEGL-IKM 86 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcC-----CCEEEEEecCchhhhhhhcc-ccccCCCCeEEEEcCCCChHHHHHH-hhc
Confidence 457999997 557889999998752 25677777665544432211 0000123688999999999998875 456
Q ss_pred ccEEEEecC
Q 005788 461 ARAIIVLAS 469 (677)
Q Consensus 461 A~aVIIltd 469 (677)
+|.||=++.
T Consensus 87 ~d~ViHlAa 95 (386)
T PLN02427 87 ADLTINLAA 95 (386)
T ss_pred CCEEEEccc
Confidence 899887774
No 135
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=78.98 E-value=6.9 Score=40.12 Aligned_cols=77 Identities=19% Similarity=0.180 Sum_probs=52.9
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC-----
Q 005788 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (677)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~----- 457 (677)
+++|.|.+. .|..++++|...+ ..|++++++++..++..+++.. ..++.++.+|.++.+.++++-
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G------~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~d~~~~~~~~~~~~~ 72 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKG------ARVVISSRNEENLEKALKELKE---YGEVYAVKADLSDKDDLKNLVKEAWE 72 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHh---cCCceEEEcCCCCHHHHHHHHHHHHH
Confidence 689999876 5888999998764 5788888888776665544321 125677889999988776531
Q ss_pred -cccccEEEEecC
Q 005788 458 -VSKARAIIVLAS 469 (677)
Q Consensus 458 -I~~A~aVIIltd 469 (677)
...-|.+|-.+.
T Consensus 73 ~~g~id~li~naG 85 (259)
T PRK08340 73 LLGGIDALVWNAG 85 (259)
T ss_pred hcCCCCEEEECCC
Confidence 234566666543
No 136
>PRK05875 short chain dehydrogenase; Provisional
Probab=78.43 E-value=9 Score=39.54 Aligned_cols=82 Identities=11% Similarity=0.093 Sum_probs=55.1
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 382 knHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
.+.++|.|.+ ..|..++++|...+ ..|++++++++..+...+++.....+.++.++.+|..+++.++++--
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAG------AAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAA 80 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHH
Confidence 4678999974 57889999998754 57888888876665544332110012357788999999887765411
Q ss_pred ----ccccEEEEecC
Q 005788 459 ----SKARAIIVLAS 469 (677)
Q Consensus 459 ----~~A~aVIIltd 469 (677)
...|.+|-.+.
T Consensus 81 ~~~~~~~d~li~~ag 95 (276)
T PRK05875 81 TAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHcCCCCEEEECCC
Confidence 25688887764
No 137
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=78.30 E-value=10 Score=40.70 Aligned_cols=79 Identities=14% Similarity=0.056 Sum_probs=53.7
Q ss_pred CeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 383 nHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
.+++|.|. |-.|..++++|...+ .+..|++.+++....+.+.... ...++.++.||..+.+.+.++ ++..
T Consensus 5 k~vLVTGatG~IG~~l~~~L~~~g----~~~~V~~~~r~~~~~~~~~~~~----~~~~~~~v~~Dl~d~~~l~~~-~~~i 75 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENY----NPKKIIIYSRDELKQWEMQQKF----PAPCLRFFIGDVRDKERLTRA-LRGV 75 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhC----CCcEEEEEcCChhHHHHHHHHh----CCCcEEEEEccCCCHHHHHHH-HhcC
Confidence 46888887 557999999998753 1246777776654433322211 123678899999999998775 4568
Q ss_pred cEEEEecCC
Q 005788 462 RAIIVLASD 470 (677)
Q Consensus 462 ~aVIIltdd 470 (677)
|.||-++..
T Consensus 76 D~Vih~Ag~ 84 (324)
T TIGR03589 76 DYVVHAAAL 84 (324)
T ss_pred CEEEECccc
Confidence 999887653
No 138
>PRK06924 short chain dehydrogenase; Provisional
Probab=78.29 E-value=6.8 Score=39.71 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=43.2
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~-e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA 456 (677)
++++|.|.+. .|..++++|.+.+ ..|+++++++ +.++...++ .+.++.++.+|.++.+.++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~ 66 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKG------THVISISRTENKELTKLAEQ-----YNSNLTFHSLDLQDVHELETN 66 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcC------CEEEEEeCCchHHHHHHHhc-----cCCceEEEEecCCCHHHHHHH
Confidence 4789998754 6889999998754 5677777665 444443221 134677888999988887653
No 139
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=78.23 E-value=8.4 Score=39.34 Aligned_cols=81 Identities=23% Similarity=0.251 Sum_probs=55.6
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
..+++|.|.+. .|..++++|.+.+ ..|++++++.+..+........ .+.++.++.+|.++++.++++-
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~i~~--~~~~~~~~~~Dl~d~~~i~~~~~~~ 83 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAG------ARVVLSARKAEELEEAAAHLEA--LGIDALWIAADVADEADIERLAEET 83 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEccCCCHHHHHHHHHHH
Confidence 46789998754 6889999998653 5788888887766654433211 1335778999999998885421
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
....|.+|-++..
T Consensus 84 ~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 84 LERFGHVDILVNNAGA 99 (259)
T ss_pred HHHhCCCCEEEECCCC
Confidence 1246888887653
No 140
>COG2985 Predicted permease [General function prediction only]
Probab=78.22 E-value=1.9 Score=48.86 Aligned_cols=58 Identities=24% Similarity=0.328 Sum_probs=45.2
Q ss_pred CCCCCCCcHHhHhhhCC-CeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCCCC
Q 005788 561 WPQLDDLRFEEVVISFP-DAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYAPG 622 (677)
Q Consensus 561 ~p~lvGktf~el~~~~~-~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg~~~di~~~~ 622 (677)
.|++.|+.++|+-.... ++.+=-++| ++...+|++|++++.||.+.++|.+++..+..
T Consensus 211 ~p~~~g~~l~d~p~l~~~~v~~sRikr----d~~~~~p~~~~~i~~Gd~l~lVG~~~~l~r~~ 269 (544)
T COG2985 211 NPNLDGLNLRDLPILRQEGVYCSRIKR----DGILAVPDPDTIIQVGDELHLVGYPDALARLD 269 (544)
T ss_pred CCCccccchhhcccccCCceEEEEEec----CCeeecCCCCcccccCcEEEecCChHHHHHHH
Confidence 57899999999986433 343333544 35789999999999999999999998876643
No 141
>PRK07102 short chain dehydrogenase; Provisional
Probab=78.05 E-value=8 Score=39.12 Aligned_cols=80 Identities=20% Similarity=0.146 Sum_probs=53.9
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I--- 458 (677)
.+++|.|.+. .|..++++|.+.+ ..|++++++++..+...++... ..+.++.++.+|..+++.++++--
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G------~~Vi~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 74 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAG------ARLYLAARDVERLERLADDLRA-RGAVAVSTHELDILDTASHAAFLDSLP 74 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcC------CEEEEEeCCHHHHHHHHHHHHH-hcCCeEEEEecCCCChHHHHHHHHHHh
Confidence 3688998654 6889999998653 6788888888766554443211 113468889999999988766311
Q ss_pred ccccEEEEecC
Q 005788 459 SKARAIIVLAS 469 (677)
Q Consensus 459 ~~A~aVIIltd 469 (677)
++.|.+|..+.
T Consensus 75 ~~~d~vv~~ag 85 (243)
T PRK07102 75 ALPDIVLIAVG 85 (243)
T ss_pred hcCCEEEECCc
Confidence 23477776553
No 142
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=77.94 E-value=3.5 Score=40.55 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=41.1
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChH-HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e-~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~ 459 (677)
....|.|+|||.+|..-+..|+..+ ..|++..++.. ..+++.++ +. ...+..+| ++
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG------~~V~Vglr~~s~s~~~A~~~--------Gf--------~v~~~~eA-v~ 59 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSG------VNVIVGLREGSASWEKAKAD--------GF--------EVMSVAEA-VK 59 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-------EEEEEE-TTCHHHHHHHHT--------T---------ECCEHHHH-HH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCC------CCEEEEecCCCcCHHHHHHC--------CC--------eeccHHHH-Hh
Confidence 3567899999999999999998764 67777766544 55544331 11 12244454 77
Q ss_pred cccEEEEecC
Q 005788 460 KARAIIVLAS 469 (677)
Q Consensus 460 ~A~aVIIltd 469 (677)
+||.|+++.+
T Consensus 60 ~aDvV~~L~P 69 (165)
T PF07991_consen 60 KADVVMLLLP 69 (165)
T ss_dssp C-SEEEE-S-
T ss_pred hCCEEEEeCC
Confidence 8999999996
No 143
>PRK07774 short chain dehydrogenase; Provisional
Probab=77.91 E-value=8.7 Score=38.81 Aligned_cols=80 Identities=15% Similarity=0.052 Sum_probs=53.9
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 382 knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
...++|.|. |..|..++++|...+ ..|++++++++..++..++... .+..+.++.+|.++.+.++++--
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g------~~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREG------ASVVVADINAEGAERVAKQIVA--DGGTAIAVQVDVSDPDSAKAMADAT 77 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 467999998 457889999998764 6788888887655544332211 12246678899999887654221
Q ss_pred ----ccccEEEEecC
Q 005788 459 ----SKARAIIVLAS 469 (677)
Q Consensus 459 ----~~A~aVIIltd 469 (677)
...|.||-.+.
T Consensus 78 ~~~~~~id~vi~~ag 92 (250)
T PRK07774 78 VSAFGGIDYLVNNAA 92 (250)
T ss_pred HHHhCCCCEEEECCC
Confidence 25688887665
No 144
>PRK07074 short chain dehydrogenase; Provisional
Probab=77.76 E-value=9.9 Score=38.72 Aligned_cols=78 Identities=13% Similarity=0.050 Sum_probs=55.1
Q ss_pred CeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 005788 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (677)
Q Consensus 383 nHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I--- 458 (677)
..++|.|.+ ..|..++++|.+.+ ..|++++++++..+...+++ .+..+.++.+|..+.+.+.++--
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g------~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAG------DRVLALDIDAAALAAFADAL----GDARFVPVACDLTDAASLAAALANAA 72 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHh----cCCceEEEEecCCCHHHHHHHHHHHH
Confidence 357888874 57889999998653 56888888887766554432 13467889999999998865322
Q ss_pred ---ccccEEEEecCC
Q 005788 459 ---SKARAIIVLASD 470 (677)
Q Consensus 459 ---~~A~aVIIltdd 470 (677)
...|.+|-.+..
T Consensus 73 ~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 73 AERGPVDVLVANAGA 87 (257)
T ss_pred HHcCCCCEEEECCCC
Confidence 246888887754
No 145
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=77.73 E-value=8.1 Score=39.28 Aligned_cols=81 Identities=11% Similarity=0.045 Sum_probs=56.0
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
...++|.|.+. .|..++++|.+.+ ..|++++++++..++..+++.. .+.++.++.+|.++.+.++++-
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAG------AAVAIADLNQDGANAVADEINK--AGGKAIGVAMDVTNEDAVNAGIDKV 78 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CeEEEEeCChHHHHHHHHHHHh--cCceEEEEECCCCCHHHHHHHHHHH
Confidence 35788998854 6889999998754 5688888888766655544321 1345788999999999886541
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
....|.+|-++..
T Consensus 79 ~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 79 AERFGSVDILVSNAGI 94 (262)
T ss_pred HHHcCCCCEEEECCcc
Confidence 1236777776643
No 146
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=77.73 E-value=12 Score=37.62 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=29.7
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
.+-||+|+|.|..|.++++.|...+- ..++++|.|.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GV-----g~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGI-----DSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEECCc
Confidence 47899999999999999999998763 4577777663
No 147
>PRK05650 short chain dehydrogenase; Provisional
Probab=77.63 E-value=8.5 Score=39.72 Aligned_cols=79 Identities=15% Similarity=0.079 Sum_probs=54.6
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC-----
Q 005788 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (677)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~----- 457 (677)
+++|.|.+. .|..++++|.+.+ ..|++++++.+..++...++.. .+.++.++.+|.++++.+.++-
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g------~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~i~~ 73 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREG------WRLALADVNEEGGEETLKLLRE--AGGDGFYQRCDVRDYSQLTALAQACEE 73 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 688888754 6889999998754 5788888887776665543321 1346778899999988876531
Q ss_pred -cccccEEEEecCC
Q 005788 458 -VSKARAIIVLASD 470 (677)
Q Consensus 458 -I~~A~aVIIltdd 470 (677)
....|.+|-.+..
T Consensus 74 ~~~~id~lI~~ag~ 87 (270)
T PRK05650 74 KWGGIDVIVNNAGV 87 (270)
T ss_pred HcCCCCEEEECCCC
Confidence 1346777776643
No 148
>PRK07890 short chain dehydrogenase; Provisional
Probab=77.52 E-value=8.7 Score=39.02 Aligned_cols=80 Identities=18% Similarity=0.146 Sum_probs=55.6
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA---- 456 (677)
.+.++|.|.+. .|..++++|...+ ..|++++++++..++...++.. .+.++.++..|.++++.++++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAG------ADVVLAARTAERLDEVAAEIDD--LGRRALAVPTDITDEDQCANLVALA 76 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHH--hCCceEEEecCCCCHHHHHHHHHHH
Confidence 46788888765 6889999998654 6788888888766655443211 134578899999998887542
Q ss_pred --CcccccEEEEecC
Q 005788 457 --SVSKARAIIVLAS 469 (677)
Q Consensus 457 --~I~~A~aVIIltd 469 (677)
...+.|.+|-.+.
T Consensus 77 ~~~~g~~d~vi~~ag 91 (258)
T PRK07890 77 LERFGRVDALVNNAF 91 (258)
T ss_pred HHHcCCccEEEECCc
Confidence 1235788887774
No 149
>PLN02214 cinnamoyl-CoA reductase
Probab=77.49 E-value=21 Score=38.71 Aligned_cols=80 Identities=15% Similarity=0.083 Sum_probs=53.2
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHH-HHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 005788 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEME-MDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (677)
Q Consensus 382 knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e-~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~ 459 (677)
..+++|.|. |-.|..++++|...+ +.|+.+.++.+... ..+..+.. ...++.++.||..+.+.+.++ ++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G------~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~-~~ 80 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG------YTVKGTVRNPDDPKNTHLRELEG--GKERLILCKADLQDYEALKAA-ID 80 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc------CEEEEEeCCchhhhHHHHHHhhC--CCCcEEEEecCcCChHHHHHH-Hh
Confidence 457999998 557889999998764 56766666543221 11111110 113577889999999988765 44
Q ss_pred cccEEEEecCC
Q 005788 460 KARAIIVLASD 470 (677)
Q Consensus 460 ~A~aVIIltdd 470 (677)
.+|.||-++..
T Consensus 81 ~~d~Vih~A~~ 91 (342)
T PLN02214 81 GCDGVFHTASP 91 (342)
T ss_pred cCCEEEEecCC
Confidence 68999988865
No 150
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=77.36 E-value=29 Score=32.49 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=27.6
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
||+|+|.|..|..+++.|...+. ..++++|.|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----CEEEEEcCCC
Confidence 68999999999999999998753 3688888773
No 151
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=77.25 E-value=7.8 Score=42.95 Aligned_cols=72 Identities=13% Similarity=0.056 Sum_probs=51.1
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
...++|+|.|..|...++.+...+ ..|+++|.++++.+.+...+ +.. +..+..+.+.|.++ +.+|
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG------a~V~v~d~~~~~~~~l~~~~-----g~~---v~~~~~~~~~l~~~-l~~a 231 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG------ATVTILDINIDRLRQLDAEF-----GGR---IHTRYSNAYEIEDA-VKRA 231 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC------CeEEEEECCHHHHHHHHHhc-----Cce---eEeccCCHHHHHHH-HccC
Confidence 456999999999999999887654 56889999988766554322 111 22334566677665 6789
Q ss_pred cEEEEec
Q 005788 462 RAIIVLA 468 (677)
Q Consensus 462 ~aVIIlt 468 (677)
|.||..+
T Consensus 232 DvVI~a~ 238 (370)
T TIGR00518 232 DLLIGAV 238 (370)
T ss_pred CEEEEcc
Confidence 9999876
No 152
>PRK05867 short chain dehydrogenase; Provisional
Probab=77.12 E-value=9.7 Score=38.82 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=54.9
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
...++|.|.+. .|..++++|.+.+ ..|++++++++..++..+++.. .+.++.++.+|.++++.++++-
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAG------AQVAIAARHLDALEKLADEIGT--SGGKVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEcCCHHHHHHHHHHHHh--cCCeEEEEEccCCCHHHHHHHHHHH
Confidence 35688888754 6889999998764 6788889888777665544321 1345778889999988876531
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
..+-|.+|-.+.
T Consensus 81 ~~~~g~id~lv~~ag 95 (253)
T PRK05867 81 TAELGGIDIAVCNAG 95 (253)
T ss_pred HHHhCCCCEEEECCC
Confidence 125577776554
No 153
>PRK07109 short chain dehydrogenase; Provisional
Probab=77.05 E-value=8.8 Score=41.55 Aligned_cols=80 Identities=16% Similarity=0.137 Sum_probs=55.9
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
...++|.|.+. .|..++++|...+ ..|++++++++.+++..++... .+.++.++.+|.++.+.++++-
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G------~~Vvl~~R~~~~l~~~~~~l~~--~g~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRG------AKVVLLARGEEGLEALAAEIRA--AGGEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHHH--cCCcEEEEEecCCCHHHHHHHHHHH
Confidence 45788888755 6889999998754 5788888888777665543321 1346788999999999887651
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
...-|.+|-.+.
T Consensus 80 ~~~~g~iD~lInnAg 94 (334)
T PRK07109 80 EEELGPIDTWVNNAM 94 (334)
T ss_pred HHHCCCCCEEEECCC
Confidence 124577766554
No 154
>PRK06181 short chain dehydrogenase; Provisional
Probab=77.01 E-value=9.1 Score=39.15 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=53.6
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~---- 457 (677)
+.++|.|.+. .|..++++|...+ ..|++++++++..++..+++.. .+.++.++.+|..+.+.++++=
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g------~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 73 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAG------AQLVLAARNETRLASLAQELAD--HGGEALVVPTDVSDAEACERLIEAAV 73 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4688999854 6888999998653 5788888887766655443211 1346778899999988776531
Q ss_pred --cccccEEEEecC
Q 005788 458 --VSKARAIIVLAS 469 (677)
Q Consensus 458 --I~~A~aVIIltd 469 (677)
....|.+|-.+.
T Consensus 74 ~~~~~id~vi~~ag 87 (263)
T PRK06181 74 ARFGGIDILVNNAG 87 (263)
T ss_pred HHcCCCCEEEECCC
Confidence 124677777664
No 155
>PRK00536 speE spermidine synthase; Provisional
Probab=76.95 E-value=23 Score=37.54 Aligned_cols=102 Identities=20% Similarity=0.139 Sum_probs=60.0
Q ss_pred eecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHH---hhhcccCCccEEEEEeCCCCHHHHhcc
Q 005788 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA---KLEFDFMGTSVICRSGSPLILADLKKV 456 (677)
Q Consensus 380 ~~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~---~~~~~~~~~~V~~I~Gd~~~~e~L~rA 456 (677)
..-.+|+|+|.|+ |. .++|+.+.. ..|+++|-|++.++...+ .+...+.+.++.++. .+++.
T Consensus 71 ~~pk~VLIiGGGD-Gg-~~REvLkh~------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-------~~~~~ 135 (262)
T PRK00536 71 KELKEVLIVDGFD-LE-LAHQLFKYD------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-------QLLDL 135 (262)
T ss_pred CCCCeEEEEcCCc-hH-HHHHHHCcC------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-------hhhhc
Confidence 3568999999998 43 456766543 379999999977654432 111223455666664 24444
Q ss_pred CcccccEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCC
Q 005788 457 SVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLD 506 (677)
Q Consensus 457 ~I~~A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e 506 (677)
..++-|.||+.+.. |..... ..-|.++| +.-++++..++-
T Consensus 136 ~~~~fDVIIvDs~~------~~~fy~--~~~~~L~~--~Gi~v~Qs~sp~ 175 (262)
T PRK00536 136 DIKKYDLIICLQEP------DIHKID--GLKRMLKE--DGVFISVAKHPL 175 (262)
T ss_pred cCCcCCEEEEcCCC------ChHHHH--HHHHhcCC--CcEEEECCCCcc
Confidence 45689999987532 222221 12444565 445666655443
No 156
>PRK07576 short chain dehydrogenase; Provisional
Probab=76.87 E-value=8.8 Score=39.64 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=54.0
Q ss_pred ecCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 005788 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (677)
Q Consensus 381 ~knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-- 457 (677)
...+++|.|.+. .|..++++|...+ ..|++++++++..+...+++.. .+.++.++.+|.++++.++++-
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~i~~~~~~ 79 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAG------ANVAVASRSQEKVDAAVAQLQQ--AGPEGLGVSADVRDYAAVEAAFAQ 79 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHH--hCCceEEEECCCCCHHHHHHHHHH
Confidence 356889998854 6888999998653 6788888887766554333211 1235677899999988876531
Q ss_pred ----cccccEEEEec
Q 005788 458 ----VSKARAIIVLA 468 (677)
Q Consensus 458 ----I~~A~aVIIlt 468 (677)
....|.+|..+
T Consensus 80 ~~~~~~~iD~vi~~a 94 (264)
T PRK07576 80 IADEFGPIDVLVSGA 94 (264)
T ss_pred HHHHcCCCCEEEECC
Confidence 13467877655
No 157
>PRK06139 short chain dehydrogenase; Provisional
Probab=76.79 E-value=8.9 Score=41.60 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=57.7
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
..+++|.|.+. .|..++++|...+ ..|++++++++.+++..++... .+.++.++..|.++.+.++++-
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G------~~Vvl~~R~~~~l~~~~~~~~~--~g~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRG------ARLVLAARDEEALQAVAEECRA--LGAEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 46889999865 6889999998764 6788899988877765544321 1346778899999998887642
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
....|.+|-.+.
T Consensus 79 ~~~~g~iD~lVnnAG 93 (330)
T PRK06139 79 ASFGGRIDVWVNNVG 93 (330)
T ss_pred HHhcCCCCEEEECCC
Confidence 135678877665
No 158
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=76.71 E-value=9.9 Score=37.95 Aligned_cols=80 Identities=18% Similarity=0.076 Sum_probs=55.0
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c-
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V- 458 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--I- 458 (677)
.+++|.|.+. .|..++++|.+.+ +.|+++.++++..+....... ..+.++.++.+|..+++.+.++- +
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g------~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADG------AKVVIYDSNEEAAEALAAELR--AAGGEARVLVFDVSDEAAVRALIEAAV 77 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC------CEEEEEeCChhHHHHHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 5799999754 6889999998653 568888888776655443321 11345778889999998876541 1
Q ss_pred ---ccccEEEEecCC
Q 005788 459 ---SKARAIIVLASD 470 (677)
Q Consensus 459 ---~~A~aVIIltdd 470 (677)
...+.+|-.+..
T Consensus 78 ~~~~~id~vi~~ag~ 92 (246)
T PRK05653 78 EAFGALDILVNNAGI 92 (246)
T ss_pred HHhCCCCEEEECCCc
Confidence 235888887743
No 159
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=76.45 E-value=6.4 Score=47.45 Aligned_cols=59 Identities=10% Similarity=0.080 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhhhhcc-------CC----CHHHHHHHHHHhhhccCCCCcc---CCCCCeEEeeeehhhh
Q 005788 291 LLFATIFLIIFGGLALYAVS-------DS----SFAEALWLSWTFVADSGNHADR---VGTGPRIVSVSISSGG 350 (677)
Q Consensus 291 Ll~~~l~lil~g~l~~~~iE-------~~----s~~dAlw~t~vTiTTvGyg~~p---~t~~gRi~~v~lil~G 350 (677)
++++++++++++.++++.+| +. -+.+||++++. .-|.||...+ .+....++.+++|..|
T Consensus 587 ll~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVs-tRTAGFntVdls~Lspatlvl~iiLMyIG 659 (800)
T TIGR00934 587 LFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVS-TRTAGFTVVDLSQLHPAIQVSYMLMMYVS 659 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhcc-cccccccccchHhcChhHHHHHHHHHHhc
Confidence 45566667778888888776 22 27888888864 4678986543 3334444444454444
No 160
>PRK09072 short chain dehydrogenase; Provisional
Probab=76.35 E-value=10 Score=38.94 Aligned_cols=80 Identities=21% Similarity=0.142 Sum_probs=55.6
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
...++|.|.+. .|..++++|.+.+ ..|++++++++..++...++. .+.++.++.+|..+.+.++++-
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAG------ARLLLVGRNAEKLEALAARLP---YPGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHH
Confidence 45688888754 6889999998653 678888888877766544331 1336778899999988765531
Q ss_pred --cccccEEEEecCC
Q 005788 458 --VSKARAIIVLASD 470 (677)
Q Consensus 458 --I~~A~aVIIltdd 470 (677)
....|.+|..+..
T Consensus 76 ~~~~~id~lv~~ag~ 90 (263)
T PRK09072 76 REMGGINVLINNAGV 90 (263)
T ss_pred HhcCCCCEEEECCCC
Confidence 2356788877643
No 161
>PRK08264 short chain dehydrogenase; Validated
Probab=76.34 E-value=8.1 Score=38.80 Aligned_cols=74 Identities=19% Similarity=0.139 Sum_probs=53.0
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCe-EEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 005788 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGV-IVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (677)
Q Consensus 382 knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~-iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-- 457 (677)
..+++|.|. |..|..++++|...+ . .|+++.++.+..++ .+.++.++.+|..+.+.++++-
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G------~~~V~~~~r~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~ 70 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARG------AAKVYAAARDPESVTD---------LGPRVVPLQLDVTDPASVAAAAEA 70 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------cccEEEEecChhhhhh---------cCCceEEEEecCCCHHHHHHHHHh
Confidence 467899986 457889999998653 4 78888887765443 1346788999999998877632
Q ss_pred cccccEEEEecCC
Q 005788 458 VSKARAIIVLASD 470 (677)
Q Consensus 458 I~~A~aVIIltdd 470 (677)
....|.+|-.+..
T Consensus 71 ~~~id~vi~~ag~ 83 (238)
T PRK08264 71 ASDVTILVNNAGI 83 (238)
T ss_pred cCCCCEEEECCCc
Confidence 2346788777653
No 162
>PRK06196 oxidoreductase; Provisional
Probab=76.08 E-value=9.4 Score=40.63 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=54.6
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~---- 457 (677)
..++|.|.+. .|..++++|...+ ..|+++.++++..++..+++ .++.++.+|.++.+.++++-
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G------~~Vv~~~R~~~~~~~~~~~l------~~v~~~~~Dl~d~~~v~~~~~~~~ 94 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAG------AHVIVPARRPDVAREALAGI------DGVEVVMLDLADLESVRAFAERFL 94 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHh------hhCeEEEccCCCHHHHHHHHHHHH
Confidence 4688888855 6889999998764 67888888887766654432 13678899999998876532
Q ss_pred --cccccEEEEecC
Q 005788 458 --VSKARAIIVLAS 469 (677)
Q Consensus 458 --I~~A~aVIIltd 469 (677)
..+.|.+|-.+.
T Consensus 95 ~~~~~iD~li~nAg 108 (315)
T PRK06196 95 DSGRRIDILINNAG 108 (315)
T ss_pred hcCCCCCEEEECCC
Confidence 245788887664
No 163
>PRK05876 short chain dehydrogenase; Provisional
Probab=75.99 E-value=10 Score=39.58 Aligned_cols=80 Identities=15% Similarity=0.068 Sum_probs=54.3
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
...++|.|.+. .|..++++|...+ ..|++++++++.+++..+++.. .+.++.++..|.++.+.++++--
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G------~~Vv~~~r~~~~l~~~~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~~~ 77 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRG------ARVVLGDVDKPGLRQAVNHLRA--EGFDVHGVMCDVRHREEVTHLADEA 77 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 34578888665 6889999998754 5788888888777665544321 13357788899999888766421
Q ss_pred ----ccccEEEEecC
Q 005788 459 ----SKARAIIVLAS 469 (677)
Q Consensus 459 ----~~A~aVIIltd 469 (677)
.+-|.+|-.+.
T Consensus 78 ~~~~g~id~li~nAg 92 (275)
T PRK05876 78 FRLLGHVDVVFSNAG 92 (275)
T ss_pred HHHcCCCCEEEECCC
Confidence 23577776554
No 164
>PRK08219 short chain dehydrogenase; Provisional
Probab=75.96 E-value=9.7 Score=37.71 Aligned_cols=75 Identities=15% Similarity=0.043 Sum_probs=52.4
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--c
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--S 459 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I--~ 459 (677)
++++|.|.+. .|..++++|.+. +.|++++++++..++.... ..++.++.||..+++.++++-- .
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-------~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~ 70 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-------HTLLLGGRPAERLDELAAE------LPGATPFPVDLTDPEAIAAAVEQLG 70 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-------CCEEEEeCCHHHHHHHHHH------hccceEEecCCCCHHHHHHHHHhcC
Confidence 5788988755 688899999764 3577778877665544321 1256789999999999876432 3
Q ss_pred cccEEEEecCC
Q 005788 460 KARAIIVLASD 470 (677)
Q Consensus 460 ~A~aVIIltdd 470 (677)
+.+.+|-....
T Consensus 71 ~id~vi~~ag~ 81 (227)
T PRK08219 71 RLDVLVHNAGV 81 (227)
T ss_pred CCCEEEECCCc
Confidence 67888877654
No 165
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=75.89 E-value=4 Score=39.39 Aligned_cols=79 Identities=20% Similarity=0.135 Sum_probs=47.0
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~a 463 (677)
+|.|||.|.-|..++..|...+ +.|.|-.++++.++.+.+.........++. +..+..-..+|++ -+++||.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g------~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~-l~~~i~~t~dl~~-a~~~ad~ 72 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG------HEVTLWGRDEEQIEEINETRQNPKYLPGIK-LPENIKATTDLEE-ALEDADI 72 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT------EEEEEETSCHHHHHHHHHHTSETTTSTTSB-EETTEEEESSHHH-HHTT-SE
T ss_pred CEEEECcCHHHHHHHHHHHHcC------CEEEEEeccHHHHHHHHHhCCCCCCCCCcc-cCcccccccCHHH-HhCcccE
Confidence 4889999999999999998764 899999999988877655322100001100 0011111123333 3468899
Q ss_pred EEEecCC
Q 005788 464 IIVLASD 470 (677)
Q Consensus 464 VIIltdd 470 (677)
||+..+.
T Consensus 73 IiiavPs 79 (157)
T PF01210_consen 73 IIIAVPS 79 (157)
T ss_dssp EEE-S-G
T ss_pred EEecccH
Confidence 9998863
No 166
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=75.88 E-value=15 Score=38.75 Aligned_cols=65 Identities=20% Similarity=0.144 Sum_probs=45.6
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~a 463 (677)
+|.|+|.|..|..++..|...+ +.|+++|.+++..+.+.+. +... .. ..+. + .+++||.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g------~~V~~~d~~~~~~~~a~~~--------g~~~-~~-~~~~---~--~~~~aDl 60 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG------HTVYGVSRRESTCERAIER--------GLVD-EA-STDL---S--LLKDCDL 60 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHC--------CCcc-cc-cCCH---h--HhcCCCE
Confidence 6889999999999999998753 6799999998877765431 1100 00 1111 1 2568999
Q ss_pred EEEecC
Q 005788 464 IIVLAS 469 (677)
Q Consensus 464 VIIltd 469 (677)
||+..+
T Consensus 61 Vilavp 66 (279)
T PRK07417 61 VILALP 66 (279)
T ss_pred EEEcCC
Confidence 999986
No 167
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=75.87 E-value=24 Score=39.71 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=53.0
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
..+++|.|.+. .|..++++|...+ ..|+++++++++.++..+.. ..++..+.+|..+++.+.+. ..+
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~G------~~Vi~l~r~~~~l~~~~~~~-----~~~v~~v~~Dvsd~~~v~~~-l~~ 245 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQG------AKVVALTSNSDKITLEINGE-----DLPVKTLHWQVGQEAALAEL-LEK 245 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHhhc-----CCCeEEEEeeCCCHHHHHHH-hCC
Confidence 35788888855 6889999998753 57788887776654433211 22466788999999887654 457
Q ss_pred ccEEEEecC
Q 005788 461 ARAIIVLAS 469 (677)
Q Consensus 461 A~aVIIltd 469 (677)
.|.+|..+.
T Consensus 246 IDiLInnAG 254 (406)
T PRK07424 246 VDILIINHG 254 (406)
T ss_pred CCEEEECCC
Confidence 888887654
No 168
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=75.87 E-value=18 Score=39.23 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=35.7
Q ss_pred ecCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHh
Q 005788 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAK 430 (677)
Q Consensus 381 ~knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~ 430 (677)
...=.||.|.++ .|...++||.+.+ ..|+|+.+++++++...++
T Consensus 48 ~g~WAVVTGaTDGIGKayA~eLAkrG------~nvvLIsRt~~KL~~v~kE 92 (312)
T KOG1014|consen 48 LGSWAVVTGATDGIGKAYARELAKRG------FNVVLISRTQEKLEAVAKE 92 (312)
T ss_pred cCCEEEEECCCCcchHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHH
Confidence 447788899988 4889999999754 7799999999998876543
No 169
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=75.85 E-value=5 Score=42.22 Aligned_cols=71 Identities=21% Similarity=0.160 Sum_probs=51.1
Q ss_pred eEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 005788 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (677)
Q Consensus 384 HIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~ 462 (677)
.++|.|. |-.|..++++|...+ ..|++++++++..+.. ...++.++.||..+.+.++++ ++.++
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g------~~V~~~~r~~~~~~~~--------~~~~~~~~~~D~~~~~~l~~~-~~~~d 66 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG------EEVRVLVRPTSDRRNL--------EGLDVEIVEGDLRDPASLRKA-VAGCR 66 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC------CEEEEEEecCcccccc--------ccCCceEEEeeCCCHHHHHHH-HhCCC
Confidence 5788886 667999999998764 5788887765442211 123577899999999888774 35678
Q ss_pred EEEEecC
Q 005788 463 AIIVLAS 469 (677)
Q Consensus 463 aVIIltd 469 (677)
.||-++.
T Consensus 67 ~vi~~a~ 73 (328)
T TIGR03466 67 ALFHVAA 73 (328)
T ss_pred EEEEece
Confidence 8887764
No 170
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=75.64 E-value=10 Score=38.80 Aligned_cols=71 Identities=24% Similarity=0.205 Sum_probs=47.1
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 005788 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (677)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA 456 (677)
.++|.|.+. .|..++++|..... ..+..|+++.++++.+++..+++.....+.++.++.+|.++.+.++++
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~--~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~ 73 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLK--SPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQL 73 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhc--cCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHH
Confidence 378888876 57889999975210 013678888888877776655432111234678889999998876653
No 171
>PRK05884 short chain dehydrogenase; Provisional
Probab=75.61 E-value=7.4 Score=39.27 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=50.1
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---c
Q 005788 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV---S 459 (677)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I---~ 459 (677)
+++|.|.+. .|..++++|...+ ..|+++++++++.++..++ .++.++.+|..+++.++++-- +
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g------~~v~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDG------HKVTLVGARRDDLEVAAKE-------LDVDAIVCDNTDPASLEEARGLFPH 68 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHh-------ccCcEEecCCCCHHHHHHHHHHHhh
Confidence 588998754 6889999998653 6788888888777655432 134567899999988776421 2
Q ss_pred cccEEEEec
Q 005788 460 KARAIIVLA 468 (677)
Q Consensus 460 ~A~aVIIlt 468 (677)
+.|.+|-.+
T Consensus 69 ~id~lv~~a 77 (223)
T PRK05884 69 HLDTIVNVP 77 (223)
T ss_pred cCcEEEECC
Confidence 456666554
No 172
>PRK09135 pteridine reductase; Provisional
Probab=75.59 E-value=12 Score=37.42 Aligned_cols=81 Identities=19% Similarity=0.122 Sum_probs=51.7
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCC-hHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc-
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD-KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d-~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I- 458 (677)
..+++|.|.+. .|..++++|...+ ..|+++++. ++..+.....+. +.....+.++.+|.++.+.+.++--
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g------~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~ 78 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAG------YRVAIHYHRSAAEADALAAELN-ALRPGSAAALQADLLDPDALPELVAA 78 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEEcCCCHHHHHHHHHHHH-hhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 46799999765 6889999998753 567777764 333333222111 1112357788999999888775422
Q ss_pred -----ccccEEEEecC
Q 005788 459 -----SKARAIIVLAS 469 (677)
Q Consensus 459 -----~~A~aVIIltd 469 (677)
...|.||-.+.
T Consensus 79 ~~~~~~~~d~vi~~ag 94 (249)
T PRK09135 79 CVAAFGRLDALVNNAS 94 (249)
T ss_pred HHHHcCCCCEEEECCC
Confidence 24688887765
No 173
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=75.41 E-value=11 Score=38.19 Aligned_cols=78 Identities=12% Similarity=0.068 Sum_probs=53.5
Q ss_pred eEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc------
Q 005788 384 HILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV------ 456 (677)
Q Consensus 384 HIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA------ 456 (677)
.++|.|.+ ..|..++++|.+.+ ..|++++++.+..++..+++.. .+.++.++.+|.++++.++++
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 73 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDG------FAVAVADLNEETAKETAKEINQ--AGGKAVAYKLDVSDKDQVFSAIDQAAE 73 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 57899875 46889999998754 5788888877665554443221 134678889999999887664
Q ss_pred CcccccEEEEecC
Q 005788 457 SVSKARAIIVLAS 469 (677)
Q Consensus 457 ~I~~A~aVIIltd 469 (677)
.....+.+|-.+.
T Consensus 74 ~~~~id~vi~~ag 86 (254)
T TIGR02415 74 KFGGFDVMVNNAG 86 (254)
T ss_pred HcCCCCEEEECCC
Confidence 1224677777664
No 174
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=75.35 E-value=10 Score=38.84 Aligned_cols=77 Identities=17% Similarity=0.202 Sum_probs=52.1
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
...++|.|.+. .|..++++|...+ ..|++++++.+..+++.+. .+.++.++.+|..+.+.++++-
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEG------ARVAVLDKSAAGLQELEAA-----HGDAVVGVEGDVRSLDDHKEAVARC 73 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHhh-----cCCceEEEEeccCCHHHHHHHHHHH
Confidence 35677888765 6889999998764 6788888887766654332 1235778899999887665431
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
..+-|.+|-.+.
T Consensus 74 ~~~~g~id~li~~Ag 88 (262)
T TIGR03325 74 VAAFGKIDCLIPNAG 88 (262)
T ss_pred HHHhCCCCEEEECCC
Confidence 124467776653
No 175
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=75.22 E-value=21 Score=33.49 Aligned_cols=74 Identities=19% Similarity=0.113 Sum_probs=44.5
Q ss_pred EEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhccc---CCccEEEEEeCCCCHHHHhccCcccc
Q 005788 385 ILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDF---MGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 385 III~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~---~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
|.|+|.|..|..++..|...+ +.|.++.+.+ ..+...++ .... .+.......-..... ....+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g------~~V~l~~r~~-~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG------HDVTLVSRSP-RLEAIKEQ-GLTITGPDGDETVQPPIVISAP----SADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT------CEEEEEESHH-HHHHHHHH-CEEEEETTEEEEEEEEEEESSH----GHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCC------CceEEEEccc-cHHhhhhe-eEEEEecccceecccccccCcc----hhccCCC
Confidence 689999999999999998764 7899998877 55553221 1000 000111111111111 4567789
Q ss_pred cEEEEecCC
Q 005788 462 RAIIVLASD 470 (677)
Q Consensus 462 ~aVIIltdd 470 (677)
|.||+.+..
T Consensus 69 D~viv~vKa 77 (151)
T PF02558_consen 69 DLVIVAVKA 77 (151)
T ss_dssp SEEEE-SSG
T ss_pred cEEEEEecc
Confidence 999999963
No 176
>PRK00811 spermidine synthase; Provisional
Probab=75.21 E-value=30 Score=36.77 Aligned_cols=81 Identities=21% Similarity=0.222 Sum_probs=51.7
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc---c-cCCccEEEEEeCCCCHHHHhcc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF---D-FMGTSVICRSGSPLILADLKKV 456 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~---~-~~~~~V~~I~Gd~~~~e~L~rA 456 (677)
...+|+++|.|. ..+++++.... ....|+++|.|++.++.+.+.+.. . +...++.++.||+.. .+++
T Consensus 76 ~p~~VL~iG~G~--G~~~~~~l~~~----~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~--~l~~- 146 (283)
T PRK00811 76 NPKRVLIIGGGD--GGTLREVLKHP----SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK--FVAE- 146 (283)
T ss_pred CCCEEEEEecCc--hHHHHHHHcCC----CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH--HHhh-
Confidence 457899999995 34455655431 124799999999877655432210 0 124578899999765 3333
Q ss_pred CcccccEEEEecCC
Q 005788 457 SVSKARAIIVLASD 470 (677)
Q Consensus 457 ~I~~A~aVIIltdd 470 (677)
.-++.|.||+...+
T Consensus 147 ~~~~yDvIi~D~~d 160 (283)
T PRK00811 147 TENSFDVIIVDSTD 160 (283)
T ss_pred CCCcccEEEECCCC
Confidence 34578999986543
No 177
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=75.12 E-value=51 Score=28.85 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=48.4
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..+|+-+|+|. |...+ .|.... .+..|+-+|.+++.++.+.++........++.+++||. .......++.
T Consensus 2 ~~~vLDlGcG~-G~~~~-~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~----~~~~~~~~~~ 71 (112)
T PF12847_consen 2 GGRVLDLGCGT-GRLSI-ALARLF----PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA----EFDPDFLEPF 71 (112)
T ss_dssp TCEEEEETTTT-SHHHH-HHHHHH----TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC----HGGTTTSSCE
T ss_pred CCEEEEEcCcC-CHHHH-HHHhcC----CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc----ccCcccCCCC
Confidence 35788888885 33222 222211 13579999999988777665542222356899999998 2333344458
Q ss_pred cEEEEec
Q 005788 462 RAIIVLA 468 (677)
Q Consensus 462 ~aVIIlt 468 (677)
|.|++..
T Consensus 72 D~v~~~~ 78 (112)
T PF12847_consen 72 DLVICSG 78 (112)
T ss_dssp EEEEECS
T ss_pred CEEEECC
Confidence 8888877
No 178
>PRK06179 short chain dehydrogenase; Provisional
Probab=75.04 E-value=5.9 Score=40.78 Aligned_cols=73 Identities=15% Similarity=-0.026 Sum_probs=51.8
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
+..++|.|.+. .|..++++|...+ ..|++++++++..+. ..++.++.+|.++++.++++--
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g------~~V~~~~r~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~~~ 67 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAG------YRVFGTSRNPARAAP----------IPGVELLELDVTDDASVQAAVDEV 67 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC------CEEEEEeCChhhccc----------cCCCeeEEeecCCHHHHHHHHHHH
Confidence 35688888765 6889999998653 678888888654332 1356788999999998876421
Q ss_pred ----ccccEEEEecCC
Q 005788 459 ----SKARAIIVLASD 470 (677)
Q Consensus 459 ----~~A~aVIIltdd 470 (677)
...|.+|..+.-
T Consensus 68 ~~~~g~~d~li~~ag~ 83 (270)
T PRK06179 68 IARAGRIDVLVNNAGV 83 (270)
T ss_pred HHhCCCCCEEEECCCC
Confidence 245788877753
No 179
>PRK05717 oxidoreductase; Validated
Probab=74.81 E-value=13 Score=37.95 Aligned_cols=78 Identities=18% Similarity=0.055 Sum_probs=52.8
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--C-
Q 005788 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S- 457 (677)
Q Consensus 382 knHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA--~- 457 (677)
.+.++|.|.+ ..|..++++|.+.+ ..|++++.+++..++..++. +.++.++.+|.++.+.++++ .
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g------~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEG------WQVVLADLDRERGSKVAKAL-----GENAWFIAMDVADEAQVAAGVAEV 78 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcC------CEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 4568888875 46889999998764 57888887766555443321 23577889999998876543 1
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
..+.|.+|-++.-
T Consensus 79 ~~~~g~id~li~~ag~ 94 (255)
T PRK05717 79 LGQFGRLDALVCNAAI 94 (255)
T ss_pred HHHhCCCCEEEECCCc
Confidence 1246788776653
No 180
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.68 E-value=12 Score=37.68 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=53.6
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 005788 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (677)
Q Consensus 382 knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA---- 456 (677)
.+.++|.|. |..|..+++.|.+.+ ..|++++++++..+...++... .+.++.++.+|..+.+.++++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G------~~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKG------AKLALIDLNQEKLEEAVAECGA--LGTEVRGYAANVTDEEDVEATFAQI 76 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 467899998 667899999998753 5688888888766655443211 134577788998887765431
Q ss_pred --CcccccEEEEecC
Q 005788 457 --SVSKARAIIVLAS 469 (677)
Q Consensus 457 --~I~~A~aVIIltd 469 (677)
.....|.||-.+.
T Consensus 77 ~~~~~~id~vi~~ag 91 (253)
T PRK08217 77 AEDFGQLNGLINNAG 91 (253)
T ss_pred HHHcCCCCEEEECCC
Confidence 1134577777664
No 181
>PRK07478 short chain dehydrogenase; Provisional
Probab=74.52 E-value=12 Score=38.04 Aligned_cols=79 Identities=19% Similarity=0.125 Sum_probs=54.5
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~---- 457 (677)
..++|.|.+. .|..++++|...+ ..|++++++++..++..+++.. .+.++.++.+|..+++.++++-
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREG------AKVVVGARRQAELDQLVAEIRA--EGGEAVALAGDVRDEAYAKALVALAV 78 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 4688888765 6889999998764 5788888888777665544321 1335778899999988766531
Q ss_pred --cccccEEEEecC
Q 005788 458 --VSKARAIIVLAS 469 (677)
Q Consensus 458 --I~~A~aVIIltd 469 (677)
..+-|.+|-.+.
T Consensus 79 ~~~~~id~li~~ag 92 (254)
T PRK07478 79 ERFGGLDIAFNNAG 92 (254)
T ss_pred HhcCCCCEEEECCC
Confidence 124577776664
No 182
>PLN02366 spermidine synthase
Probab=74.36 E-value=31 Score=37.33 Aligned_cols=82 Identities=23% Similarity=0.248 Sum_probs=51.6
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhh---cccCCccEEEEEeCCCCHHHHhccC
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE---FDFMGTSVICRSGSPLILADLKKVS 457 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~---~~~~~~~V~~I~Gd~~~~e~L~rA~ 457 (677)
...+|+|+|.|. | .+++++.+.. ....|+++|-|++.++...+.+. ..+.+.++.++.||+.. -+++..
T Consensus 91 ~pkrVLiIGgG~-G-~~~rellk~~----~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~--~l~~~~ 162 (308)
T PLN02366 91 NPKKVLVVGGGD-G-GVLREIARHS----SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE--FLKNAP 162 (308)
T ss_pred CCCeEEEEcCCc-c-HHHHHHHhCC----CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH--HHhhcc
Confidence 357899999996 3 3566776532 12468899999876654433211 11234579999999754 233332
Q ss_pred cccccEEEEecCC
Q 005788 458 VSKARAIIVLASD 470 (677)
Q Consensus 458 I~~A~aVIIltdd 470 (677)
-++-|.||+...+
T Consensus 163 ~~~yDvIi~D~~d 175 (308)
T PLN02366 163 EGTYDAIIVDSSD 175 (308)
T ss_pred CCCCCEEEEcCCC
Confidence 3468999986654
No 183
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=74.30 E-value=12 Score=37.96 Aligned_cols=80 Identities=19% Similarity=0.143 Sum_probs=54.0
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.+.++|.|.+. .|..++++|.+.+ ..|++++++++..++..+++.. .+.++.++.+|..+++.++++-
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G------~~vvl~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYG------AEIIINDITAERAELAVAKLRQ--EGIKAHAAPFNVTHKQEVEAAIEHI 80 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcC------CEEEEEcCCHHHHHHHHHHHHh--cCCeEEEEecCCCCHHHHHHHHHHH
Confidence 35688888765 6889999998753 6788999887776665443321 1235677888988888776531
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
....|.+|-.+.
T Consensus 81 ~~~~~~id~vi~~ag 95 (254)
T PRK08085 81 EKDIGPIDVLINNAG 95 (254)
T ss_pred HHhcCCCCEEEECCC
Confidence 123577777664
No 184
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=74.29 E-value=13 Score=37.49 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=55.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.+.++|.|.+. .|..++++|.+.+ ..|++++++.+..++..++... .+.++.++.+|..+.+.++++-
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~ 74 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEG------AKVAVFDLNREAAEKVAADIRA--KGGNAQAFACDITDRDSVDTAVAAA 74 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC------CEEEEecCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 46788888654 6889999998754 5788888887665554332211 1345788999999998877642
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
....|.+|..+.
T Consensus 75 ~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 75 EQALGPVDVLVNNAG 89 (250)
T ss_pred HHHcCCCCEEEECCC
Confidence 135688887775
No 185
>PRK06180 short chain dehydrogenase; Provisional
Probab=74.28 E-value=11 Score=39.18 Aligned_cols=77 Identities=17% Similarity=-0.002 Sum_probs=53.7
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~---- 457 (677)
+.++|.|.+. .|..++++|...+ ..|++++++++..+..... .+.++.++.+|.++.+.+.++-
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G------~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~~ 73 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAG------HRVVGTVRSEAARADFEAL-----HPDRALARLLDVTDFDAIDAVVADAE 73 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCc------CEEEEEeCCHHHHHHHHhh-----cCCCeeEEEccCCCHHHHHHHHHHHH
Confidence 5689998755 6889999998653 6788889888776554332 1235778899999998876531
Q ss_pred --cccccEEEEecCC
Q 005788 458 --VSKARAIIVLASD 470 (677)
Q Consensus 458 --I~~A~aVIIltdd 470 (677)
....+.+|-.+..
T Consensus 74 ~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 74 ATFGPIDVLVNNAGY 88 (277)
T ss_pred HHhCCCCEEEECCCc
Confidence 1246777776643
No 186
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=74.18 E-value=19 Score=36.11 Aligned_cols=78 Identities=19% Similarity=0.132 Sum_probs=54.8
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.++++|.|.+. .|..++++|.+.+ ..|++.+++.+.+++...+. +.++.++.+|..+.+.++++-
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g------~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQG------AIVGLHGTRVEKLEALAAEL-----GERVKIFPANLSDRDEVKALGQKA 74 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHH
Confidence 46888888654 6889999998754 57777888877766554322 235778889999988887641
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
..+.|.+|-.+..
T Consensus 75 ~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 75 EADLEGVDILVNNAGI 90 (245)
T ss_pred HHHcCCCCEEEECCCC
Confidence 2356888877653
No 187
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=74.12 E-value=14 Score=39.45 Aligned_cols=80 Identities=20% Similarity=0.087 Sum_probs=55.9
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
...++|.|.+. .|..++++|...+ ..|++++++.+..++..+++.. .+.++.++.+|..+.+.++++--
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G------~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~v~~~~~~~ 77 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRG------WHVIMACRNLKKAEAAAQELGI--PPDSYTIIHIDLGDLDSVRRFVDDF 77 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHhhc--cCCceEEEEecCCCHHHHHHHHHHH
Confidence 45688888765 6889999998754 6788888888776665544311 13467889999999988765422
Q ss_pred ----ccccEEEEecC
Q 005788 459 ----SKARAIIVLAS 469 (677)
Q Consensus 459 ----~~A~aVIIltd 469 (677)
...|.+|-.+.
T Consensus 78 ~~~~~~iD~li~nAg 92 (322)
T PRK07453 78 RALGKPLDALVCNAA 92 (322)
T ss_pred HHhCCCccEEEECCc
Confidence 24677777654
No 188
>PRK12828 short chain dehydrogenase; Provisional
Probab=74.01 E-value=11 Score=37.50 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=51.2
Q ss_pred CeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 005788 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (677)
Q Consensus 383 nHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I--- 458 (677)
..++|.|. |..|..++++|...+ ..|++++++++..++...+.. ...+.++.+|..+.+.++++--
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARG------ARVALIGRGAAPLSQTLPGVP----ADALRIGGIDLVDPQAARRAVDEVN 77 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCC------CeEEEEeCChHhHHHHHHHHh----hcCceEEEeecCCHHHHHHHHHHHH
Confidence 46788876 557889999998654 578899888766554443321 2345667799988887765321
Q ss_pred ---ccccEEEEecC
Q 005788 459 ---SKARAIIVLAS 469 (677)
Q Consensus 459 ---~~A~aVIIltd 469 (677)
...|.||-.+.
T Consensus 78 ~~~~~~d~vi~~ag 91 (239)
T PRK12828 78 RQFGRLDALVNIAG 91 (239)
T ss_pred HHhCCcCEEEECCc
Confidence 25677776654
No 189
>PRK07825 short chain dehydrogenase; Provisional
Probab=73.90 E-value=11 Score=38.96 Aligned_cols=75 Identities=16% Similarity=0.053 Sum_probs=51.9
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c-
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V- 458 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--I- 458 (677)
..++|.|.+. .|..++++|...+ ..|++.+++++.+++..... ..+.++.+|.++++.++++- +
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~ 73 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALG------ARVAIGDLDEALAKETAAEL------GLVVGGPLDVTDPASFAAFLDAVE 73 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHh------ccceEEEccCCCHHHHHHHHHHHH
Confidence 5789999865 6888999998653 67888888888776654422 13677889999988764421 1
Q ss_pred ---ccccEEEEecC
Q 005788 459 ---SKARAIIVLAS 469 (677)
Q Consensus 459 ---~~A~aVIIltd 469 (677)
...|.+|-.+.
T Consensus 74 ~~~~~id~li~~ag 87 (273)
T PRK07825 74 ADLGPIDVLVNNAG 87 (273)
T ss_pred HHcCCCCEEEECCC
Confidence 24567776553
No 190
>PRK07904 short chain dehydrogenase; Provisional
Probab=73.78 E-value=12 Score=38.65 Aligned_cols=81 Identities=20% Similarity=0.107 Sum_probs=51.8
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHH-HHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEE-MEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--- 456 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~-~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA--- 456 (677)
.++++|.|.+. .|..++++|.+.+ +..|++.+++++. .++..++... ..+.++.++.+|..+++..+++
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~g-----g~~V~~~~r~~~~~~~~~~~~l~~-~~~~~v~~~~~D~~~~~~~~~~~~~ 81 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNA-----PARVVLAALPDDPRRDAAVAQMKA-AGASSVEVIDFDALDTDSHPKVIDA 81 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcC-----CCeEEEEeCCcchhHHHHHHHHHh-cCCCceEEEEecCCChHHHHHHHHH
Confidence 45799999876 5888999998652 3577788777664 5554443311 1123678899999887764432
Q ss_pred --CcccccEEEEec
Q 005788 457 --SVSKARAIIVLA 468 (677)
Q Consensus 457 --~I~~A~aVIIlt 468 (677)
.-.+.|.+|..+
T Consensus 82 ~~~~g~id~li~~a 95 (253)
T PRK07904 82 AFAGGDVDVAIVAF 95 (253)
T ss_pred HHhcCCCCEEEEee
Confidence 012567676544
No 191
>PRK07814 short chain dehydrogenase; Provisional
Probab=73.68 E-value=13 Score=38.18 Aligned_cols=80 Identities=9% Similarity=0.082 Sum_probs=55.5
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.+.++|.|.+. .|..+++.|...+ ..|++++++++..++..+.+.. .+.++.++.+|.++++.+.++-
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G------~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAG------ADVLIAARTESQLDEVAEQIRA--AGRRAHVVAADLAHPEATAGLAGQA 81 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 45678888775 6889999998653 5788888887766655443311 1346788899999999886531
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
..+.|.+|-.+.
T Consensus 82 ~~~~~~id~vi~~Ag 96 (263)
T PRK07814 82 VEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHcCCCCEEEECCC
Confidence 135678876654
No 192
>PLN02253 xanthoxin dehydrogenase
Probab=73.60 E-value=13 Score=38.48 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=54.3
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
...++|.|.+. .|..++++|.+.+ ..|++++++++..++..++.. .+.++.++.+|..+.+.++++--
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G------~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHG------AKVCIVDLQDDLGQNVCDSLG---GEPNVCFFHCDVTVEDDVSRAVDFT 88 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHhc---CCCceEEEEeecCCHHHHHHHHHHH
Confidence 34688888765 5888999998754 678888887766555444321 12467889999999988766421
Q ss_pred ----ccccEEEEecC
Q 005788 459 ----SKARAIIVLAS 469 (677)
Q Consensus 459 ----~~A~aVIIltd 469 (677)
.+.|.+|-.+.
T Consensus 89 ~~~~g~id~li~~Ag 103 (280)
T PLN02253 89 VDKFGTLDIMVNNAG 103 (280)
T ss_pred HHHhCCCCEEEECCC
Confidence 25677877664
No 193
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=73.20 E-value=43 Score=35.85 Aligned_cols=116 Identities=15% Similarity=0.076 Sum_probs=63.8
Q ss_pred EeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccEEEEe
Q 005788 388 LGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVL 467 (677)
Q Consensus 388 ~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~aVIIl 467 (677)
||.|..+..+++.+.. +..|+-+|-+++-++...+++...+.+.++..+.||..+...+..... ..+.+++.
T Consensus 72 cGtG~~t~~Ll~~l~~-------~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~-~~~~~~~~ 143 (301)
T TIGR03438 72 SGSSRKTRLLLDALRQ-------PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPA-AGRRLGFF 143 (301)
T ss_pred CCcchhHHHHHHhhcc-------CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccc-cCCeEEEE
Confidence 4445556666666642 256999999998776665554322334567889999887543332211 33455554
Q ss_pred cCC--CCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCCHHHHHHc
Q 005788 468 ASD--ENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLV 514 (677)
Q Consensus 468 tdd--~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~~~~l~~a 514 (677)
.+. .+-...|..+++.- ..+.++| +...+.-+.-......+..+
T Consensus 144 ~gs~~~~~~~~e~~~~L~~-i~~~L~p--gG~~lig~d~~~~~~~~~~a 189 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRR-IRQLLGP--GGGLLIGVDLVKDPAVLEAA 189 (301)
T ss_pred ecccccCCCHHHHHHHHHH-HHHhcCC--CCEEEEeccCCCCHHHHHHh
Confidence 433 22223344343332 2344666 45666666666666555443
No 194
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.03 E-value=33 Score=37.04 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=46.2
Q ss_pred ecCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 005788 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (677)
Q Consensus 381 ~knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~r 455 (677)
...-++|-|.|. .|..++.||.+.+ ..+++.|-+++-.++-.++... .+ .+....-|.++.+++.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg------~~~vl~Din~~~~~etv~~~~~--~g-~~~~y~cdis~~eei~~ 103 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRG------AKLVLWDINKQGNEETVKEIRK--IG-EAKAYTCDISDREEIYR 103 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhC------CeEEEEeccccchHHHHHHHHh--cC-ceeEEEecCCCHHHHHH
Confidence 466777888887 5888999998764 5788888887666655443311 02 57778888888887654
No 195
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=73.01 E-value=4.4 Score=34.21 Aligned_cols=32 Identities=25% Similarity=0.190 Sum_probs=26.8
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
+++|+|.|..+.+++..|...+ ..|.+++..+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g------~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG------KEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT------SEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhC------cEEEEEeccc
Confidence 6899999999999999998764 5777777654
No 196
>PRK07060 short chain dehydrogenase; Provisional
Probab=72.80 E-value=11 Score=37.98 Aligned_cols=76 Identities=16% Similarity=0.009 Sum_probs=52.7
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c
Q 005788 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (677)
Q Consensus 382 knHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--I 458 (677)
.+.++|.|.+ ..|..+++.|...+ ..|++++++++..++.... .++.++.+|.++.+.++++- .
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g------~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~ 75 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRG------ARVVAAARNAAALDRLAGE-------TGCEPLRLDVGDDAAIRAALAAA 75 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHH-------hCCeEEEecCCCHHHHHHHHHHh
Confidence 3578999984 57889999998653 5788888887766554332 13456789999988776532 2
Q ss_pred ccccEEEEecCC
Q 005788 459 SKARAIIVLASD 470 (677)
Q Consensus 459 ~~A~aVIIltdd 470 (677)
...|.+|-.+..
T Consensus 76 ~~~d~vi~~ag~ 87 (245)
T PRK07060 76 GAFDGLVNCAGI 87 (245)
T ss_pred CCCCEEEECCCC
Confidence 346888776643
No 197
>PRK08589 short chain dehydrogenase; Validated
Probab=72.77 E-value=14 Score=38.42 Aligned_cols=79 Identities=14% Similarity=0.060 Sum_probs=53.5
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
..+++|.|.+. .|..++++|...+ ..|++++++ +..++..+++.. .+.++.++.+|.++++.++++-
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G------~~vi~~~r~-~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 76 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEG------AYVLAVDIA-EAVSETVDKIKS--NGGKAKAYHVDISDEQQVKDFASEI 76 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCc-HHHHHHHHHHHh--cCCeEEEEEeecCCHHHHHHHHHHH
Confidence 45788999865 6889999998764 678888887 555554443321 1335788999999988775421
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
..+.|.+|-.+.
T Consensus 77 ~~~~g~id~li~~Ag 91 (272)
T PRK08589 77 KEQFGRVDVLFNNAG 91 (272)
T ss_pred HHHcCCcCEEEECCC
Confidence 124577776654
No 198
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=72.58 E-value=9.6 Score=39.73 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=50.0
Q ss_pred eEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCCh--HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDK--EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 384 HIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~--e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
+|+|.|. |-.|..++++|...+. ...|++++... ...+. +.... ...++.++.||..+++.+.++ ++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~----~~~v~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~Dl~~~~~~~~~-~~~ 71 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHP----DAEVIVLDKLTYAGNLEN-LADLE---DNPRYRFVKGDIGDRELVSRL-FTE 71 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCC----CCEEEEecCCCcchhhhh-hhhhc---cCCCcEEEEcCCcCHHHHHHH-Hhh
Confidence 4789987 5679999999987531 24566666432 11111 11111 123577899999999998776 333
Q ss_pred --ccEEEEecCC
Q 005788 461 --ARAIIVLASD 470 (677)
Q Consensus 461 --A~aVIIltdd 470 (677)
+|.||-++..
T Consensus 72 ~~~d~vi~~a~~ 83 (317)
T TIGR01181 72 HQPDAVVHFAAE 83 (317)
T ss_pred cCCCEEEEcccc
Confidence 8999988854
No 199
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=72.39 E-value=7.2 Score=43.33 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=51.4
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHH--HHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 005788 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD--IAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (677)
Q Consensus 382 knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~--l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I 458 (677)
...|+|.|. |..|..++++|...+ +.|+++.++....+.. ..+... ...++.++.||.++.+.++++--
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G------~~V~~l~R~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~d~~~l~~~~~ 131 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG------YNVVAVAREKSGIRGKNGKEDTKK--ELPGAEVVFGDVTDADSLRKVLF 131 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC------CEEEEEEechhhccccchhhHHhh--hcCCceEEEeeCCCHHHHHHHHH
Confidence 346889987 556889999998754 5677777765432110 000000 02367889999999999987632
Q ss_pred c---cccEEEEec
Q 005788 459 S---KARAIIVLA 468 (677)
Q Consensus 459 ~---~A~aVIIlt 468 (677)
+ .+|.||.+.
T Consensus 132 ~~~~~~D~Vi~~a 144 (390)
T PLN02657 132 SEGDPVDVVVSCL 144 (390)
T ss_pred HhCCCCcEEEECC
Confidence 2 588888654
No 200
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=72.11 E-value=44 Score=36.24 Aligned_cols=112 Identities=16% Similarity=0.173 Sum_probs=63.4
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc--ccCCccEEEEEeCCCCHHHHhccCc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF--DFMGTSVICRSGSPLILADLKKVSV 458 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~--~~~~~~V~~I~Gd~~~~e~L~rA~I 458 (677)
...+|.|+|.|.+|..++-.|...+ -...++|+|.+++.++....++.. .+. .++. +.+ .+.++ .
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~----~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~~~~-i~~--~~~~~-----~ 71 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQG----IADELVIIDINKEKAEGDAMDLSHAVPFT-SPTK-IYA--GDYSD-----C 71 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC----CCCEEEEEeCCCchhHHHHHHHHhhcccc-CCeE-EEe--CCHHH-----h
Confidence 3569999999999999998887543 124799999877655443333321 111 1332 333 23444 4
Q ss_pred ccccEEEEecCCCC-C--ccch--HHHHHHHH----HHhhhcCCCCceEEEEeCCCCCH
Q 005788 459 SKARAIIVLASDEN-A--DQSD--ARALRVVL----SLTGVKEGLRGHVVVEMSDLDNE 508 (677)
Q Consensus 459 ~~A~aVIIltdd~~-~--~~sD--a~NI~i~L----sar~l~p~l~~~IIArv~d~e~~ 508 (677)
++||.||+++.... + +..| ..|+.++. .+++++| ++ ++.-+.||.+.
T Consensus 72 ~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~--~~-~vivvsNP~d~ 127 (315)
T PRK00066 72 KDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGF--DG-IFLVASNPVDI 127 (315)
T ss_pred CCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC--Ce-EEEEccCcHHH
Confidence 58999999887621 1 1122 22444432 3344555 33 34555677654
No 201
>PRK06483 dihydromonapterin reductase; Provisional
Probab=71.57 E-value=11 Score=37.93 Aligned_cols=61 Identities=16% Similarity=0.070 Sum_probs=41.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~r 455 (677)
.+.++|.|.+. .|..++++|...+ ..|++++++++...+.++. .++.++.+|.++.+.+++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~ 63 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQG------QPVIVSYRTHYPAIDGLRQ-------AGAQCIQADFSTNAGIMA 63 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCC------CeEEEEeCCchhHHHHHHH-------cCCEEEEcCCCCHHHHHH
Confidence 35788999865 6889999998653 5777888776543332221 235677888888777654
No 202
>PRK04457 spermidine synthase; Provisional
Probab=71.35 E-value=57 Score=34.34 Aligned_cols=79 Identities=16% Similarity=0.095 Sum_probs=51.2
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..+|+++|.| +..+...+..... +..++.+|.|++.++.+.+.+.......++.++.||+.+. +.+. .++.
T Consensus 67 ~~~vL~IG~G--~G~l~~~l~~~~p----~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~--l~~~-~~~y 137 (262)
T PRK04457 67 PQHILQIGLG--GGSLAKFIYTYLP----DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY--IAVH-RHST 137 (262)
T ss_pred CCEEEEECCC--HhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH--HHhC-CCCC
Confidence 3579999998 4556666655432 2568999999987776544332211235788899997643 3332 2578
Q ss_pred cEEEEecC
Q 005788 462 RAIIVLAS 469 (677)
Q Consensus 462 ~aVIIltd 469 (677)
|.|++-..
T Consensus 138 D~I~~D~~ 145 (262)
T PRK04457 138 DVILVDGF 145 (262)
T ss_pred CEEEEeCC
Confidence 99988653
No 203
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=71.15 E-value=15 Score=37.07 Aligned_cols=79 Identities=16% Similarity=0.085 Sum_probs=52.9
Q ss_pred CeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc-----
Q 005788 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (677)
Q Consensus 383 nHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA----- 456 (677)
+.++|.|.+ ..|..++++|.+.+ ..|++++++++..+++...... .+.++.++.+|..+.+.++++
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 73 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAG------ANVVVNDLGEAGAEAAAKVATD--AGGSVIYLVADVTKEDEIADMIAAAA 73 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCceEEEECCCCCHHHHHHHHHHHH
Confidence 358888864 46889999998753 5788888887766555443211 134678899999999855432
Q ss_pred -CcccccEEEEecC
Q 005788 457 -SVSKARAIIVLAS 469 (677)
Q Consensus 457 -~I~~A~aVIIltd 469 (677)
.....|.||-.+.
T Consensus 74 ~~~~~~d~vi~~a~ 87 (255)
T TIGR01963 74 AEFGGLDILVNNAG 87 (255)
T ss_pred HhcCCCCEEEECCC
Confidence 1234677776664
No 204
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=70.85 E-value=8.7 Score=45.71 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=52.5
Q ss_pred eecCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 005788 380 IEKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (677)
Q Consensus 380 ~~knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I 458 (677)
+...+|+|.|. |-.|..++++|...+ ++.|+.++++........ ...++.++.||..+.+.+.+.-+
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~-----g~~V~~l~r~~~~~~~~~-------~~~~~~~~~gDl~d~~~~l~~~l 380 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDD-----NYEVYGLDIGSDAISRFL-------GHPRFHFVEGDISIHSEWIEYHI 380 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCC-----CcEEEEEeCCchhhhhhc-------CCCceEEEeccccCcHHHHHHHh
Confidence 45678999996 557999999998642 367888887664332211 12357889999998665433234
Q ss_pred ccccEEEEecC
Q 005788 459 SKARAIIVLAS 469 (677)
Q Consensus 459 ~~A~aVIIltd 469 (677)
+.+|+||=++.
T Consensus 381 ~~~D~ViHlAa 391 (660)
T PRK08125 381 KKCDVVLPLVA 391 (660)
T ss_pred cCCCEEEECcc
Confidence 57899886553
No 205
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=70.69 E-value=16 Score=37.79 Aligned_cols=80 Identities=21% Similarity=0.249 Sum_probs=54.0
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.+.++|.|.+. .|..++++|...+ ..|++++++.+..++..+++.. .+.++.++.+|..+++.+.++-
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAG------AKVAILDRNQEKAEAVVAEIKA--AGGEALAVKADVLDKESLEQARQQI 81 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 45678888754 6889999998654 5788888887666555443311 1335778899999988766531
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
..+.|.+|-.+.
T Consensus 82 ~~~~g~id~li~~ag 96 (278)
T PRK08277 82 LEDFGPCDILINGAG 96 (278)
T ss_pred HHHcCCCCEEEECCC
Confidence 235677777654
No 206
>PRK07035 short chain dehydrogenase; Provisional
Probab=70.59 E-value=17 Score=36.77 Aligned_cols=79 Identities=13% Similarity=0.060 Sum_probs=51.2
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.+.++|.|.+. .|..++++|...+ ..|++++++++..+...+++.. .+..+.++..|..+.+.++++-
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G------~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQG------AHVIVSSRKLDGCQAVADAIVA--AGGKAEALACHIGEMEQIDALFAHI 79 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 45688888776 5889999998754 5788888887766665543311 1234567788888877765421
Q ss_pred ---cccccEEEEec
Q 005788 458 ---VSKARAIIVLA 468 (677)
Q Consensus 458 ---I~~A~aVIIlt 468 (677)
..+-|.+|-.+
T Consensus 80 ~~~~~~id~li~~a 93 (252)
T PRK07035 80 RERHGRLDILVNNA 93 (252)
T ss_pred HHHcCCCCEEEECC
Confidence 12356666544
No 207
>PRK06057 short chain dehydrogenase; Provisional
Probab=70.54 E-value=11 Score=38.43 Aligned_cols=75 Identities=12% Similarity=0.005 Sum_probs=51.1
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
.++++|.|.+. .|..++++|...+ ..|++++++++..++..+++ ...++.+|..+++.++++--
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G------~~v~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~ 73 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEG------ATVVVGDIDPEAGKAAADEV-------GGLFVPTDVTDEDAVNALFDTA 73 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHc-------CCcEEEeeCCCHHHHHHHHHHH
Confidence 36788999854 6889999998754 67888888877665544322 11467889988887665322
Q ss_pred ----ccccEEEEecC
Q 005788 459 ----SKARAIIVLAS 469 (677)
Q Consensus 459 ----~~A~aVIIltd 469 (677)
.+.|.+|-.+.
T Consensus 74 ~~~~~~id~vi~~ag 88 (255)
T PRK06057 74 AETYGSVDIAFNNAG 88 (255)
T ss_pred HHHcCCCCEEEECCC
Confidence 24577777664
No 208
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=70.44 E-value=20 Score=37.06 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=32.4
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEE-EEcC----------ChHHHHHHH
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVV-LAER----------DKEEMEMDI 428 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVV-LiD~----------d~e~~e~~l 428 (677)
...+++|.|+|.+|..+++.|...+ ..|| +.|. |.+++.+..
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g------~~vv~v~D~~g~~~~~~Gld~~~l~~~~ 82 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAG------AKVVAVSDSDGTIYNPDGLDVPALLAYK 82 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCC------CEEEEEECCCCeEECCCCCCHHHHHHHH
Confidence 4689999999999999999998754 4555 8888 766665543
No 209
>PRK01581 speE spermidine synthase; Validated
Probab=70.40 E-value=65 Score=35.94 Aligned_cols=81 Identities=22% Similarity=0.155 Sum_probs=52.7
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHh--h----hcccCCccEEEEEeCCCCHHHHh
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAK--L----EFDFMGTSVICRSGSPLILADLK 454 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~--~----~~~~~~~~V~~I~Gd~~~~e~L~ 454 (677)
...+|+|+|.|. |. .++++.... ....|+++|-|++.++.+.+- + ...+.+.++.++.||+.+ .|+
T Consensus 150 ~PkrVLIIGgGd-G~-tlrelLk~~----~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~--fL~ 221 (374)
T PRK01581 150 DPKRVLILGGGD-GL-ALREVLKYE----TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE--FLS 221 (374)
T ss_pred CCCEEEEECCCH-HH-HHHHHHhcC----CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH--HHH
Confidence 346999999995 44 556666532 125799999999876654420 0 012235689999999874 343
Q ss_pred ccCcccccEEEEecCC
Q 005788 455 KVSVSKARAIIVLASD 470 (677)
Q Consensus 455 rA~I~~A~aVIIltdd 470 (677)
+. -++.|.||+-..+
T Consensus 222 ~~-~~~YDVIIvDl~D 236 (374)
T PRK01581 222 SP-SSLYDVIIIDFPD 236 (374)
T ss_pred hc-CCCccEEEEcCCC
Confidence 32 3578999998754
No 210
>PRK07775 short chain dehydrogenase; Provisional
Probab=70.39 E-value=17 Score=37.79 Aligned_cols=81 Identities=20% Similarity=0.153 Sum_probs=54.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
+++++|.|.+. .|..++++|...+ ..|+++.++.+..++...+... .+.++.++.+|.++.+.++++-
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G------~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAG------FPVALGARRVEKCEELVDKIRA--DGGEAVAFPLDVTDPDSVKSFVAQA 81 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHH
Confidence 46899998754 6889999998753 5677777776655544332211 1235778899999999886531
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
....|.+|-.+..
T Consensus 82 ~~~~~~id~vi~~Ag~ 97 (274)
T PRK07775 82 EEALGEIEVLVSGAGD 97 (274)
T ss_pred HHhcCCCCEEEECCCc
Confidence 2356888877754
No 211
>PRK07677 short chain dehydrogenase; Provisional
Probab=70.24 E-value=18 Score=36.80 Aligned_cols=79 Identities=23% Similarity=0.228 Sum_probs=52.7
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~---- 457 (677)
..++|.|.+. .|..++++|.+.+ ..|++++++++..++..++... .+.++.++.+|.++++.++++-
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G------~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 73 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEG------ANVVITGRTKEKLEEAKLEIEQ--FPGQVLTVQMDVRNPEDVQKMVEQID 73 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3578888866 6888999998653 5788888887666554433211 1246778999999988776532
Q ss_pred --cccccEEEEecC
Q 005788 458 --VSKARAIIVLAS 469 (677)
Q Consensus 458 --I~~A~aVIIltd 469 (677)
..+.|.+|-.+.
T Consensus 74 ~~~~~id~lI~~ag 87 (252)
T PRK07677 74 EKFGRIDALINNAA 87 (252)
T ss_pred HHhCCccEEEECCC
Confidence 124577776653
No 212
>PRK05693 short chain dehydrogenase; Provisional
Probab=70.20 E-value=14 Score=38.21 Aligned_cols=74 Identities=20% Similarity=0.075 Sum_probs=52.3
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc-----
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA----- 456 (677)
+.++|.|.+. .|..++++|...+ ..|++++++.+..++... .++.++.+|..+.+.++++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~~~ 67 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAG------YEVWATARKAEDVEALAA--------AGFTAVQLDVNDGAALARLAEELE 67 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHH--------CCCeEEEeeCCCHHHHHHHHHHHH
Confidence 4688998755 6888999997653 678888888776655422 2456788999998887653
Q ss_pred -CcccccEEEEecCC
Q 005788 457 -SVSKARAIIVLASD 470 (677)
Q Consensus 457 -~I~~A~aVIIltdd 470 (677)
...+.|.+|-.+..
T Consensus 68 ~~~~~id~vi~~ag~ 82 (274)
T PRK05693 68 AEHGGLDVLINNAGY 82 (274)
T ss_pred HhcCCCCEEEECCCC
Confidence 12356888877753
No 213
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=70.17 E-value=16 Score=38.74 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=51.0
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHH---HHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC
Q 005788 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEE---MEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS 457 (677)
Q Consensus 382 knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~---~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~ 457 (677)
...|+|.|. |-.|..++++|...+ +.|+++.++.+. ++..... .-...++.++.||..+.+.+.++
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g------~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~Dl~~~~~~~~~- 74 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRG------YTVKATVRDLTDRKKTEHLLAL---DGAKERLKLFKADLLEESSFEQA- 74 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC------CEEEEEECCCcchHHHHHHHhc---cCCCCceEEEecCCCCcchHHHH-
Confidence 357889986 456889999998764 456654444332 2222110 00123678899999999888765
Q ss_pred cccccEEEEecCC
Q 005788 458 VSKARAIIVLASD 470 (677)
Q Consensus 458 I~~A~aVIIltdd 470 (677)
++.+|.||-++..
T Consensus 75 ~~~~d~vih~A~~ 87 (322)
T PLN02986 75 IEGCDAVFHTASP 87 (322)
T ss_pred HhCCCEEEEeCCC
Confidence 3458899988864
No 214
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=70.10 E-value=51 Score=31.78 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=44.9
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~ 462 (677)
.+|=++|.|..|..+++.|...+ +.|.+.|++++..++..+. ++.. ..+.+++ +++||
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g------~~v~~~d~~~~~~~~~~~~--------g~~~----~~s~~e~----~~~~d 59 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAG------YEVTVYDRSPEKAEALAEA--------GAEV----ADSPAEA----AEQAD 59 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTT------TEEEEEESSHHHHHHHHHT--------TEEE----ESSHHHH----HHHBS
T ss_pred CEEEEEchHHHHHHHHHHHHhcC------CeEEeeccchhhhhhhHHh--------hhhh----hhhhhhH----hhccc
Confidence 57889999999999999998764 7899999999888876542 2211 1233443 44569
Q ss_pred EEEEecC
Q 005788 463 AIIVLAS 469 (677)
Q Consensus 463 aVIIltd 469 (677)
.||++..
T Consensus 60 vvi~~v~ 66 (163)
T PF03446_consen 60 VVILCVP 66 (163)
T ss_dssp EEEE-SS
T ss_pred ceEeecc
Confidence 8988875
No 215
>PLN02583 cinnamoyl-CoA reductase
Probab=70.01 E-value=20 Score=37.90 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=50.2
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCC--hHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 005788 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERD--KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (677)
Q Consensus 382 knHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d--~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I 458 (677)
+.+++|.|.+ -.|..++++|...+ +.|+++.++ +...+..+..+.. .+.++.++.||.++.+.+.++ +
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G------~~V~~~~R~~~~~~~~~~~~~l~~--~~~~~~~~~~Dl~d~~~~~~~-l 76 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRG------YTVHAAVQKNGETEIEKEIRGLSC--EEERLKVFDVDPLDYHSILDA-L 76 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC------CEEEEEEcCchhhhHHHHHHhccc--CCCceEEEEecCCCHHHHHHH-H
Confidence 4579999975 46889999998764 567666553 2222222222110 123678899999999988764 4
Q ss_pred ccccEEEEec
Q 005788 459 SKARAIIVLA 468 (677)
Q Consensus 459 ~~A~aVIIlt 468 (677)
..+++++-..
T Consensus 77 ~~~d~v~~~~ 86 (297)
T PLN02583 77 KGCSGLFCCF 86 (297)
T ss_pred cCCCEEEEeC
Confidence 4677877543
No 216
>PRK05872 short chain dehydrogenase; Provisional
Probab=69.96 E-value=17 Score=38.28 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=54.9
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.+.++|.|.+. .|..++++|...+ ..|++++++++.+++..+++.. +..+..+..|.++.+.++++-
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARG------AKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEA 79 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHH
Confidence 45788888755 6889999998653 6788889988877766554321 235666779999988876541
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
...-|.+|..+.
T Consensus 80 ~~~~g~id~vI~nAG 94 (296)
T PRK05872 80 VERFGGIDVVVANAG 94 (296)
T ss_pred HHHcCCCCEEEECCC
Confidence 135677777665
No 217
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=69.80 E-value=2e+02 Score=32.47 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=41.0
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..+++|+|.|+.+..++++|.+... .+-.+|=++|.+++.. ..+ .++. +.|+..+...+ +.-.+.
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~~--~g~~vvG~idd~~~~~-~~i---------~g~p-Vlg~~~~l~~~--i~~~~i 189 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNPD--LGYRVVGFVDDRPSDR-VEV---------AGLP-VLGKLDDLVEL--VRAHRV 189 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCcc--CCeEEEEEEeCCcccc-ccc---------CCCc-ccCCHHHHHHH--HHhCCC
Confidence 4579999999999999999975421 1123444566554321 100 1222 33543332222 223467
Q ss_pred cEEEEecCC
Q 005788 462 RAIIVLASD 470 (677)
Q Consensus 462 ~aVIIltdd 470 (677)
|.|++..+.
T Consensus 190 d~ViIa~p~ 198 (445)
T TIGR03025 190 DEVIIALPL 198 (445)
T ss_pred CEEEEecCc
Confidence 778887753
No 218
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.45 E-value=16 Score=37.41 Aligned_cols=63 Identities=10% Similarity=0.128 Sum_probs=41.9
Q ss_pred cCeEEEEecc---chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 005788 382 KNHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (677)
Q Consensus 382 knHIII~G~g---~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~r 455 (677)
..+++|.|.+ ..|..++++|.+++ ..|++..++. +.++.+++.. ..++.++..|.++++..++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G------~~Vi~~~r~~-~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~ 72 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQG------ATVIYTYQND-RMKKSLQKLV----DEEDLLVECDVASDESIER 72 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCC------CEEEEecCch-HHHHHHHhhc----cCceeEEeCCCCCHHHHHH
Confidence 3578888986 57999999998764 5688887763 3333333221 2245667788887776654
No 219
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=69.41 E-value=45 Score=35.58 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=48.4
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~a 463 (677)
+|-|+|.|..|..+++.|...+ +.|++.|++++..+.+.+. +... ..+.+++.+ .++++|.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g------~~V~~~dr~~~~~~~l~~~--------g~~~----~~s~~~~~~-~~~~~dv 62 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRG------HDCVGYDHDQDAVKAMKED--------RTTG----VANLRELSQ-RLSAPRV 62 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHc--------CCcc----cCCHHHHHh-hcCCCCE
Confidence 5889999999999999998754 6888899999887765431 1111 134444443 2457899
Q ss_pred EEEecCC
Q 005788 464 IIVLASD 470 (677)
Q Consensus 464 VIIltdd 470 (677)
|+++.++
T Consensus 63 Ii~~vp~ 69 (298)
T TIGR00872 63 VWVMVPH 69 (298)
T ss_pred EEEEcCc
Confidence 9999863
No 220
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=69.25 E-value=39 Score=36.51 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=62.0
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc--ccCC-ccEEEEEeCCCCHHHHhccCccc
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF--DFMG-TSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~--~~~~-~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
+|.|+|.|.+|..++-.|...+ -...++|+|.+++..+....++.. .+.. .++.+..| +.++ ..+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~----~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~---~y~~-----~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALG----LFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG---DYDD-----CAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcC----CCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEEC---CHHH-----hCC
Confidence 4789999999999988877543 224799999876544333333321 1221 23333323 3444 457
Q ss_pred ccEEEEecCCC-CCccc----h--HHHHHHH----HHHhhhcCCCCceEEEEeCCCCCH
Q 005788 461 ARAIIVLASDE-NADQS----D--ARALRVV----LSLTGVKEGLRGHVVVEMSDLDNE 508 (677)
Q Consensus 461 A~aVIIltdd~-~~~~s----D--a~NI~i~----Lsar~l~p~l~~~IIArv~d~e~~ 508 (677)
||.||+++... .+.++ | ..|..+. -.+++.+| + -++.-+.||-+.
T Consensus 69 aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p--~-~i~ivvsNPvDv 124 (307)
T cd05290 69 ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTK--E-AVIILITNPLDI 124 (307)
T ss_pred CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC--C-eEEEEecCcHHH
Confidence 88899988762 22222 2 3354332 33444554 3 356667787543
No 221
>PRK06953 short chain dehydrogenase; Provisional
Probab=69.17 E-value=26 Score=34.92 Aligned_cols=73 Identities=16% Similarity=0.098 Sum_probs=50.6
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--Cc--
Q 005788 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SV-- 458 (677)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA--~I-- 458 (677)
.++|.|.+. .|..++++|...+ ..|++++++++..++... .++.++.+|.++.+.++++ .+
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G------~~v~~~~r~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~~~~~~ 68 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADG------WRVIATARDAAALAALQA--------LGAEALALDVADPASVAGLAWKLDG 68 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCC------CEEEEEECCHHHHHHHHh--------ccceEEEecCCCHHHHHHHHHHhcC
Confidence 578888654 6889999998653 578888888766554321 2456789999999888774 12
Q ss_pred ccccEEEEecCC
Q 005788 459 SKARAIIVLASD 470 (677)
Q Consensus 459 ~~A~aVIIltdd 470 (677)
.+.|.+|-.+..
T Consensus 69 ~~~d~vi~~ag~ 80 (222)
T PRK06953 69 EALDAAVYVAGV 80 (222)
T ss_pred CCCCEEEECCCc
Confidence 246777776543
No 222
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=68.96 E-value=19 Score=40.78 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=31.5
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHH
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEME 425 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e 425 (677)
....++|+|+|..|..++..+...+ ..|+++|.++....
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G------a~ViV~d~dp~ra~ 249 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG------ARVIVTEVDPICAL 249 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC------CEEEEEcCCchhhH
Confidence 3568999999999999998887653 57999998886543
No 223
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=68.84 E-value=43 Score=35.30 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=30.2
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHH
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD 427 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~ 427 (677)
+|.|+|.|..|..++..|...+ +.|+++++ ++..+.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g------~~V~~~~r-~~~~~~~ 38 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAG------RDVTFLVR-PKRAKAL 38 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCC------CceEEEec-HHHHHHH
Confidence 6899999999999999998753 67888888 6666554
No 224
>PRK08263 short chain dehydrogenase; Provisional
Probab=68.58 E-value=18 Score=37.44 Aligned_cols=77 Identities=14% Similarity=-0.007 Sum_probs=53.5
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc-----
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA----- 456 (677)
..++|.|.+. .|..++++|.+.+ ..|++++++++..+...+.. +..+.++.+|.++++.++++
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERG------DRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAV 72 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHH
Confidence 3578888654 6888999997653 67888888887766554322 23577889999999887653
Q ss_pred -CcccccEEEEecCC
Q 005788 457 -SVSKARAIIVLASD 470 (677)
Q Consensus 457 -~I~~A~aVIIltdd 470 (677)
.....|.+|-.+..
T Consensus 73 ~~~~~~d~vi~~ag~ 87 (275)
T PRK08263 73 EHFGRLDIVVNNAGY 87 (275)
T ss_pred HHcCCCCEEEECCCC
Confidence 11345788877654
No 225
>PRK08862 short chain dehydrogenase; Provisional
Probab=68.57 E-value=19 Score=36.54 Aligned_cols=79 Identities=9% Similarity=0.095 Sum_probs=52.2
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA---- 456 (677)
...++|.|.+. .|..++++|...+ ..|+++.++++.+++..++... .+.++..+..|..+++.++++
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G------~~V~~~~r~~~~l~~~~~~i~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLG------ATLILCDQDQSALKDTYEQCSA--LTDNVYSFQLKDFSQESIRHLFDAI 76 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCC------CEEEEEcCCHHHHHHHHHHHHh--cCCCeEEEEccCCCHHHHHHHHHHH
Confidence 35788899887 5889999998764 6788888888877766543321 123456667777777776542
Q ss_pred --Ccc-cccEEEEec
Q 005788 457 --SVS-KARAIIVLA 468 (677)
Q Consensus 457 --~I~-~A~aVIIlt 468 (677)
... +-|.+|..+
T Consensus 77 ~~~~g~~iD~li~na 91 (227)
T PRK08862 77 EQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHhCCCCCEEEECC
Confidence 112 456666655
No 226
>PRK08177 short chain dehydrogenase; Provisional
Probab=68.28 E-value=15 Score=36.83 Aligned_cols=74 Identities=19% Similarity=0.054 Sum_probs=49.4
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc---
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV--- 458 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I--- 458 (677)
.+++|.|... .|..++++|...+ ..|++++++++..+++ ++. .++.+..+|..+.+.++++--
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G------~~V~~~~r~~~~~~~~-~~~------~~~~~~~~D~~d~~~~~~~~~~~~ 68 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERG------WQVTATVRGPQQDTAL-QAL------PGVHIEKLDMNDPASLDQLLQRLQ 68 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCC------CEEEEEeCCCcchHHH-Hhc------cccceEEcCCCCHHHHHHHHHHhh
Confidence 4688998655 6888999998753 5788888877655443 211 245677889888876654321
Q ss_pred -ccccEEEEecC
Q 005788 459 -SKARAIIVLAS 469 (677)
Q Consensus 459 -~~A~aVIIltd 469 (677)
.+.|.+|..+.
T Consensus 69 ~~~id~vi~~ag 80 (225)
T PRK08177 69 GQRFDLLFVNAG 80 (225)
T ss_pred cCCCCEEEEcCc
Confidence 25677777663
No 227
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=68.27 E-value=54 Score=36.33 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=29.4
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCC
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d 420 (677)
.+.+|+|+|.|..|..+++.|...+- ..++++|.|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv-----g~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV-----GTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCC
Confidence 56789999999999999999988753 367888887
No 228
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=68.21 E-value=16 Score=39.63 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=52.5
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhh---cccCCccEEEEEeCCCCHHHHhccC
Q 005788 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE---FDFMGTSVICRSGSPLILADLKKVS 457 (677)
Q Consensus 382 knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~---~~~~~~~V~~I~Gd~~~~e~L~rA~ 457 (677)
..+|+|.|. |-.|..++++|...+ ..|+.+|+........+.+.. ......++.++.||..+.+.|.++
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~- 87 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLN------QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKA- 87 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC------CEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH-
Confidence 357999997 567999999999764 567777764322111111110 000012577899999998887754
Q ss_pred cccccEEEEecCC
Q 005788 458 VSKARAIIVLASD 470 (677)
Q Consensus 458 I~~A~aVIIltdd 470 (677)
+++++.||=++..
T Consensus 88 ~~~~d~ViHlAa~ 100 (348)
T PRK15181 88 CKNVDYVLHQAAL 100 (348)
T ss_pred hhCCCEEEECccc
Confidence 3468998888754
No 229
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=68.21 E-value=20 Score=38.31 Aligned_cols=81 Identities=21% Similarity=0.079 Sum_probs=54.7
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
+.+++|.|.+. .|..++++|...+ ...|+++.++.+..++..+++. ..+..+.++..|.++.+.++++-
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G-----~~~V~l~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~v~~~~~~~ 75 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATG-----EWHVIMACRDFLKAEQAAKSLG--MPKDSYTIMHLDLGSLDSVRQFVQQF 75 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcC-----CCEEEEEeCCHHHHHHHHHHhc--CCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 55889999876 5888999998652 1567788888776665554432 12345778889999998876532
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
..+-|.+|..+.
T Consensus 76 ~~~~~~iD~lI~nAG 90 (314)
T TIGR01289 76 RESGRPLDALVCNAA 90 (314)
T ss_pred HHhCCCCCEEEECCC
Confidence 134677776654
No 230
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=68.20 E-value=21 Score=36.61 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=50.0
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLi-D~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-- 457 (677)
...++|.|.+. .|..++++|.+.+ ..|+++ .++++..+...+++... .+.++.++..|.++++.++++-
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G------~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~ 80 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSG------VNIAFTYNSNVEEANKIAEDLEQK-YGIKAKAYPLNILEPETYKELFKK 80 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEEcCCCHHHHHHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHH
Confidence 35777888866 5889999999764 456665 45666555544332111 1346788899999988765531
Q ss_pred ----cccccEEEEec
Q 005788 458 ----VSKARAIIVLA 468 (677)
Q Consensus 458 ----I~~A~aVIIlt 468 (677)
..+.|.+|-.+
T Consensus 81 ~~~~~g~id~lv~nA 95 (260)
T PRK08416 81 IDEDFDRVDFFISNA 95 (260)
T ss_pred HHHhcCCccEEEECc
Confidence 12456666554
No 231
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=68.07 E-value=20 Score=38.22 Aligned_cols=81 Identities=11% Similarity=0.091 Sum_probs=52.4
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh---HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK---EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~---e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I 458 (677)
..+++|+|.|..+..++..|...+. ..|++++++. ++.++..+++... ..++.+...|..+.+.+.. .+
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~-----~~V~I~~R~~~~~~~a~~l~~~l~~~--~~~~~~~~~d~~~~~~~~~-~~ 197 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGA-----KEITIFNIKDDFYERAEQTAEKIKQE--VPECIVNVYDLNDTEKLKA-EI 197 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCchHHHHHHHHHHHHhhc--CCCceeEEechhhhhHHHh-hh
Confidence 4689999999889999999987642 3477888875 5555554433211 1233344556666555543 45
Q ss_pred ccccEEEEecCC
Q 005788 459 SKARAIIVLASD 470 (677)
Q Consensus 459 ~~A~aVIIltdd 470 (677)
+++|.+|-.|+-
T Consensus 198 ~~~DilINaTp~ 209 (289)
T PRK12548 198 ASSDILVNATLV 209 (289)
T ss_pred ccCCEEEEeCCC
Confidence 678999888864
No 232
>PRK06125 short chain dehydrogenase; Provisional
Probab=68.00 E-value=21 Score=36.51 Aligned_cols=81 Identities=17% Similarity=0.145 Sum_probs=54.1
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--I 458 (677)
.+.++|.|.+. .|..++++|...+ ..|++++++++..++..+++.. ..+.++.++..|.++++.++++- .
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEG------CHLHLVARDADALEALAADLRA-AHGVDVAVHALDLSSPEAREQLAAEA 79 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHh-hcCCceEEEEecCCCHHHHHHHHHHh
Confidence 35778888754 6889999998753 5788888887766654433211 11345778899999988775531 2
Q ss_pred ccccEEEEecC
Q 005788 459 SKARAIIVLAS 469 (677)
Q Consensus 459 ~~A~aVIIltd 469 (677)
.+.|.+|-.+.
T Consensus 80 g~id~lv~~ag 90 (259)
T PRK06125 80 GDIDILVNNAG 90 (259)
T ss_pred CCCCEEEECCC
Confidence 35677776654
No 233
>PLN03223 Polycystin cation channel protein; Provisional
Probab=67.87 E-value=27 Score=44.50 Aligned_cols=57 Identities=14% Similarity=0.059 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHhhhccC-CC-C-c-cC----CCCCeEE-eeeehhhhHHHHHHHHHHHHHHHHHh
Q 005788 312 SSFAEALWLSWTFVADSG-NH-A-D-RV----GTGPRIV-SVSISSGGMLIFAMMLGLVSDAISEK 368 (677)
Q Consensus 312 ~s~~dAlw~t~vTiTTvG-yg-~-~-p~----t~~gRi~-~v~lil~Gi~ifa~lig~it~~i~~~ 368 (677)
.+|..+++--+..+..-. |. . . .. ...|.++ ..+++++.++++-++++++.+.+.+-
T Consensus 1360 STf~sSL~TLFqMLLGDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1360 SDMTDSINSLFENLLGDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred cCHHHHHHHHHHHHHcCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777776655544211 11 1 0 11 1234443 44555666677788889888887764
No 234
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.82 E-value=14 Score=41.50 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=50.1
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~-e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
...++|+|.|..|..+++.|...+ ..|+++|.+. +.+++..+++. ..++.++.++..+. ....
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G------~~V~~~d~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~------~~~~ 68 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLG------AKVILTDEKEEDQLKEALEELG----ELGIELVLGEYPEE------FLEG 68 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC------CEEEEEeCCchHHHHHHHHHHH----hcCCEEEeCCcchh------Hhhc
Confidence 467999999999999999998764 7888998874 44443333221 23456777887652 2356
Q ss_pred ccEEEEecC
Q 005788 461 ARAIIVLAS 469 (677)
Q Consensus 461 A~aVIIltd 469 (677)
+|.||..+.
T Consensus 69 ~d~vv~~~g 77 (450)
T PRK14106 69 VDLVVVSPG 77 (450)
T ss_pred CCEEEECCC
Confidence 888888775
No 235
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=67.63 E-value=7.9 Score=44.86 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHhhhccCCCCccCCCCCeEEeeeehhhhHHHHHHHHHHHHHHH
Q 005788 312 SSFAEALWLSWTFVADSGNHADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAI 365 (677)
Q Consensus 312 ~s~~dAlw~t~vTiTTvGyg~~p~t~~gRi~~v~lil~Gi~ifa~lig~it~~i 365 (677)
.+++.++||++.-+.-.|-.+.|.+.-|||++-++-++.+++++.-++-++..+
T Consensus 594 FgifNsLWFsLgAFMQQG~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFL 647 (897)
T KOG1054|consen 594 FGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFL 647 (897)
T ss_pred chhhHHHHHHHHHHHhcCCCCCccccccceeccchhhhhhhhhhhhhhHHHHHH
Confidence 358999999999999999999999999999987777777777766666555543
No 236
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=67.53 E-value=43 Score=35.44 Aligned_cols=71 Identities=18% Similarity=0.113 Sum_probs=46.2
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~ 462 (677)
-+|-|+|+|..|..+++.|..... +-..+.+.+.+++..++..+++ +.. .-..+.+.|. +++|
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~---~~el~aV~dr~~~~a~~~a~~~-------g~~---~~~~~~eell----~~~D 69 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLP---GLTLSAVAVRDPQRHADFIWGL-------RRP---PPVVPLDQLA----THAD 69 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCC---CeEEEEEECCCHHHHHHHHHhc-------CCC---cccCCHHHHh----cCCC
Confidence 579999999999999998875311 1134457898888766654321 100 0124566663 4589
Q ss_pred EEEEecCC
Q 005788 463 AIIVLASD 470 (677)
Q Consensus 463 aVIIltdd 470 (677)
.|++.++.
T Consensus 70 ~Vvi~tp~ 77 (271)
T PRK13302 70 IVVEAAPA 77 (271)
T ss_pred EEEECCCc
Confidence 99999964
No 237
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=67.51 E-value=5.9 Score=43.43 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhccCCC-HHHHHHHHHHhhhccCCC--C-c-cCCCC---CeEEeeeehhhh
Q 005788 283 YPYAKLLALLFATIFLIIFGGLALYAVSDSS-FAEALWLSWTFVADSGNH--A-D-RVGTG---PRIVSVSISSGG 350 (677)
Q Consensus 283 ~~~~~l~~Ll~~~l~lil~g~l~~~~iE~~s-~~dAlw~t~vTiTTvGyg--~-~-p~t~~---gRi~~v~lil~G 350 (677)
....+..+++++.+++++++++.+...+... +.|+++-++..+.|+|.+ . . +.+.. ++++.+++|+.|
T Consensus 263 ~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~G 338 (354)
T PF02386_consen 263 QTVRKAFAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLG 338 (354)
T ss_dssp SHHHHHCCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHh
Confidence 3344444455555566666777666555443 799999999999999984 3 1 23344 666655555444
No 238
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.47 E-value=20 Score=38.89 Aligned_cols=70 Identities=19% Similarity=0.077 Sum_probs=53.1
Q ss_pred eecC-eEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 005788 380 IEKN-HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (677)
Q Consensus 380 ~~kn-HIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~r 455 (677)
..++ -+||.|.+. .|.+.+++|...+ ..||+.-+|.+..++..++........++.+++.|.++.+..++
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~G------a~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~ 103 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRG------AHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRK 103 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCC------CEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHH
Confidence 3444 667778876 5889999998764 67889989987777777766544556788889999998887665
No 239
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=67.33 E-value=20 Score=37.66 Aligned_cols=117 Identities=11% Similarity=0.111 Sum_probs=68.3
Q ss_pred eecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 005788 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (677)
Q Consensus 380 ~~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~ 459 (677)
...-||+|||.|.+|.-.++.|...+- -.+.|+|.|.-.+... +.++....|+ .|=.
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGi-----g~itlID~D~v~vTN~---------NRQi~A~~~~---------iGk~ 84 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGI-----GRITLIDMDDVCVTNT---------NRQIHALLGD---------IGKP 84 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCC-----CeEEEEeccccccccc---------chhhHhhhhh---------cccH
Confidence 357899999999999999999987653 4678888776443322 1122222222 2211
Q ss_pred cccEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCCHHHHHHcCCC-eeEEEechHHHHHHHHHHhcC
Q 005788 460 KARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGE-LIETVVAHDVIGRLMIQCALQ 538 (677)
Q Consensus 460 ~A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~~~~l~~aGad-~VevVv~~el~a~lLaq~a~~ 538 (677)
+ .-...--++.+||...+..+...-+++|.+.+-.-+.| .|+.+.+-...+.+++-|..+
T Consensus 85 K-------------------v~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ 145 (263)
T COG1179 85 K-------------------VEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRN 145 (263)
T ss_pred H-------------------HHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHc
Confidence 1 11112245677885544555556677887776655666 334443334446666665553
No 240
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.28 E-value=22 Score=35.88 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=53.3
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEE-EcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVL-AERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVL-iD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
.+++|.|.+. .|..++++|.+.+ ..|++ ..++.+..++..++... .+.++.++.+|.++++.++++--
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g------~~v~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 76 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEG------YDIAVNYARSRKAAEETAEEIEA--LGRKALAVKANVGDVEKIKEMFAQI 76 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEEcCCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5789998765 6889999998764 44444 46666655554433211 13467889999999998765421
Q ss_pred ----ccccEEEEecCC
Q 005788 459 ----SKARAIIVLASD 470 (677)
Q Consensus 459 ----~~A~aVIIltdd 470 (677)
...|.+|-.+..
T Consensus 77 ~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 77 DEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHcCCCCEEEECCCC
Confidence 256888887753
No 241
>PRK10750 potassium transporter; Provisional
Probab=66.95 E-value=52 Score=37.94 Aligned_cols=74 Identities=11% Similarity=0.092 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHhhhccCCCC--c-----cCCCCCeEEeeeehhhh-HHHHHH
Q 005788 285 YAKLLALLFATIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHA--D-----RVGTGPRIVSVSISSGG-MLIFAM 356 (677)
Q Consensus 285 ~~~l~~Ll~~~l~lil~g~l~~~~iE~~s~~dAlw~t~vTiTTvGyg~--~-----p~t~~gRi~~v~lil~G-i~ifa~ 356 (677)
..+....+++.+++++++++++ ..++.++.+|+--+..+++++|.+. . ..+..++++.++.|+.| +.++++
T Consensus 394 v~~v~~~~~ly~~~~~~~~~~l-~~~g~~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllGRLEi~tv 472 (483)
T PRK10750 394 LEAVWGFFSAYALVFIVSMLAI-IATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGRLEVFTL 472 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455455555555555666655 5678899999998889999888752 2 23345787766666555 555554
Q ss_pred HHH
Q 005788 357 MLG 359 (677)
Q Consensus 357 lig 359 (677)
++.
T Consensus 473 l~~ 475 (483)
T PRK10750 473 LVL 475 (483)
T ss_pred HHH
Confidence 443
No 242
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=66.77 E-value=60 Score=31.93 Aligned_cols=33 Identities=18% Similarity=0.038 Sum_probs=27.4
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
||+|+|.|-.|..+++.|...+- ..++++|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-----GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCE
Confidence 68999999999999999987652 3588888875
No 243
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=66.64 E-value=23 Score=36.08 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=52.6
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.+.++|.|.+. .|..++++|...+ ..+++++++.+..+...++... .+.++.++..|.++.+.++++-
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G------~~vv~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~i~~~~~~~ 82 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAG------ASVVVSDINADAANHVVDEIQQ--LGGQAFACRCDITSEQELSALADFA 82 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 45677777765 5889999998764 5677788777666554433211 1335778889999988876531
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
..+-|.+|-.+.
T Consensus 83 ~~~~~~~d~li~~ag 97 (255)
T PRK06113 83 LSKLGKVDILVNNAG 97 (255)
T ss_pred HHHcCCCCEEEECCC
Confidence 124577777664
No 244
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=66.30 E-value=25 Score=35.42 Aligned_cols=80 Identities=19% Similarity=0.101 Sum_probs=50.9
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEE-EcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVL-AERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVL-iD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-- 457 (677)
.+.++|.|.+. .|..++++|...+ ..|++ ..++++..+....+... .+.++.++.+|..+.+.++++-
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g------~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARG------WSVGINYARDAAAAEETADAVRA--AGGRACVVAGDVANEADVIAMFDA 73 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCC------CEEEEEeCCCHHHHHHHHHHHHh--cCCcEEEEEeccCCHHHHHHHHHH
Confidence 45789999765 6888999998754 44554 44555554443332211 1346788999999888765421
Q ss_pred ----cccccEEEEecC
Q 005788 458 ----VSKARAIIVLAS 469 (677)
Q Consensus 458 ----I~~A~aVIIltd 469 (677)
....|.+|-.+.
T Consensus 74 ~~~~~~~id~li~~ag 89 (248)
T PRK06947 74 VQSAFGRLDALVNNAG 89 (248)
T ss_pred HHHhcCCCCEEEECCc
Confidence 235678887664
No 245
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.25 E-value=24 Score=35.34 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=52.9
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
..+++|.|.+. .|..++++|.+.+ ..|++..++++..+....+... ..++.++.+|..+.+.++++-
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEG------AQVCINSRNENKLKRMKKTLSK---YGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh---cCCeEEEECCCCCHHHHHHHHHHH
Confidence 35888998865 6888999998754 5788888887766554332211 125678899999988776531
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
....+.+|....
T Consensus 76 ~~~~~~id~ii~~ag 90 (238)
T PRK05786 76 AKVLNAIDGLVVTVG 90 (238)
T ss_pred HHHhCCCCEEEEcCC
Confidence 123477776664
No 246
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=66.25 E-value=23 Score=35.70 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=50.7
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChH-HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--- 456 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e-~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA--- 456 (677)
...++|.|.+. .|..++++|.+.+ ..|+++++++. ...+.+++. +.++.++.+|.++.+.++++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G------~~vi~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~ 73 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAG------ADIVGAGRSEPSETQQQVEAL-----GRRFLSLTADLSDIEAIKALVDS 73 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEcCchHHHHHHHHHhc-----CCceEEEECCCCCHHHHHHHHHH
Confidence 35688888854 6889999998764 57777776542 222222221 33577889999999887632
Q ss_pred ---CcccccEEEEecCC
Q 005788 457 ---SVSKARAIIVLASD 470 (677)
Q Consensus 457 ---~I~~A~aVIIltdd 470 (677)
.....|.+|-.+..
T Consensus 74 ~~~~~~~~d~li~~ag~ 90 (248)
T TIGR01832 74 AVEEFGHIDILVNNAGI 90 (248)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 12356777776643
No 247
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=66.22 E-value=57 Score=34.80 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=45.3
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHH-HhccCccccc
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILAD-LKKVSVSKAR 462 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~-L~rA~I~~A~ 462 (677)
+|-|+|.|..|..+++.|...+ +.|++.|++++..+.+.+ .++. . ..+.+. .+++ +.||
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g------~~v~v~dr~~~~~~~~~~--------~g~~---~-~~s~~~~~~~~--~~ad 61 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDG------HEVVGYDVNQEAVDVAGK--------LGIT---A-RHSLEELVSKL--EAPR 61 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCC------CEEEEEECCHHHHHHHHH--------CCCe---e-cCCHHHHHHhC--CCCC
Confidence 4789999999999999998754 678889999887766432 1211 1 123333 3333 3578
Q ss_pred EEEEecCC
Q 005788 463 AIIVLASD 470 (677)
Q Consensus 463 aVIIltdd 470 (677)
.||++.++
T Consensus 62 vVi~~vp~ 69 (299)
T PRK12490 62 TIWVMVPA 69 (299)
T ss_pred EEEEEecC
Confidence 89888864
No 248
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=65.99 E-value=29 Score=34.98 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=52.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc-
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLi-D~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I- 458 (677)
..+++|.|.+. .|..++++|...+ ..|++. .++++..++..+++.. .+.++.++..|..+++.+.++--
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g------~~v~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~ 77 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEG------AKVVINYNSSKEAAENLVNELGK--EGHDVYAVQADVSKVEDANRLVEE 77 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC------CEEEEEcCCcHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHH
Confidence 46889998765 5889999998654 445543 4455555444333211 13468889999999988776421
Q ss_pred -----ccccEEEEecCC
Q 005788 459 -----SKARAIIVLASD 470 (677)
Q Consensus 459 -----~~A~aVIIltdd 470 (677)
.+.|.+|-.+..
T Consensus 78 ~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 78 AVNHFGKVDILVNNAGI 94 (247)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 246888877654
No 249
>PRK07832 short chain dehydrogenase; Provisional
Probab=65.95 E-value=22 Score=36.79 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=51.7
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC-----
Q 005788 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (677)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~----- 457 (677)
.++|.|.+. .|..++++|...+ ..|++++++++..++..+++.. .....+.++.+|..+++.++++-
T Consensus 2 ~vlItGas~giG~~la~~la~~G------~~vv~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQG------AELFLTDRDADGLAQTVADARA-LGGTVPEHRALDISDYDAVAAFAADIHA 74 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh-cCCCcceEEEeeCCCHHHHHHHHHHHHH
Confidence 588888765 6888999998653 5688888887766655443321 11223455789999988765421
Q ss_pred -cccccEEEEecC
Q 005788 458 -VSKARAIIVLAS 469 (677)
Q Consensus 458 -I~~A~aVIIltd 469 (677)
....|.+|-.+.
T Consensus 75 ~~~~id~lv~~ag 87 (272)
T PRK07832 75 AHGSMDVVMNIAG 87 (272)
T ss_pred hcCCCCEEEECCC
Confidence 235788887664
No 250
>PRK12746 short chain dehydrogenase; Provisional
Probab=65.85 E-value=32 Score=34.83 Aligned_cols=81 Identities=19% Similarity=0.170 Sum_probs=53.2
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEE-EcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVL-AERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVL-iD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-- 457 (677)
...++|.|.+. .|..++++|.+.+ ..|++ ..++.+..++...+... .+..+.++.+|.++++.+.++-
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G------~~v~i~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~i~~~~~~ 77 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDG------ALVAIHYGRNKQAADETIREIES--NGGKAFLIEADLNSIDGVKKLVEQ 77 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEEcCCCHHHHHHHHHHHHh--cCCcEEEEEcCcCCHHHHHHHHHH
Confidence 36789998765 6889999998754 45555 45666655554433211 1235778999999999876641
Q ss_pred ----------cccccEEEEecCC
Q 005788 458 ----------VSKARAIIVLASD 470 (677)
Q Consensus 458 ----------I~~A~aVIIltdd 470 (677)
..+.|.+|-.+..
T Consensus 78 ~~~~~~~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 78 LKNELQIRVGTSEIDILVNNAGI 100 (254)
T ss_pred HHHHhccccCCCCccEEEECCCC
Confidence 1357888876643
No 251
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=65.71 E-value=24 Score=37.92 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=33.0
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHH
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~ 429 (677)
+|.|+|.|..|..+...|...+ +.|.+++++++.++.+.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g------~~V~l~~r~~~~~~~i~~ 41 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK------ISVNLWGRNHTTFESINT 41 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC------CeEEEEecCHHHHHHHHH
Confidence 5899999999999999998764 678899998877766543
No 252
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=65.58 E-value=26 Score=37.31 Aligned_cols=40 Identities=30% Similarity=0.131 Sum_probs=33.3
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHH
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~ 429 (677)
+|.|+|.|..|..++..|...+ +.|.+.+++++..+.+.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g------~~V~~~~r~~~~~~~~~~ 42 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNG------HDVTLWARDPEQAAEINA 42 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCC------CEEEEEECCHHHHHHHHH
Confidence 6999999999999999998753 678999998877766543
No 253
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=65.54 E-value=68 Score=35.38 Aligned_cols=83 Identities=13% Similarity=0.019 Sum_probs=50.0
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChH-------------------HHHHHHHhhhcccCCccEE
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE-------------------EMEMDIAKLEFDFMGTSVI 441 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e-------------------~~e~~l~~~~~~~~~~~V~ 441 (677)
.+-+|+|+|.|..|..+++.|...+- ..+.++|.|.- +.+.+.+++..-.....+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~ 101 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGV-----GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVT 101 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEE
Confidence 46799999999999999999988753 35777777641 2222222111001123455
Q ss_pred EEEeCCCCHHHHhccCcccccEEEEecCC
Q 005788 442 CRSGSPLILADLKKVSVSKARAIIVLASD 470 (677)
Q Consensus 442 ~I~Gd~~~~e~L~rA~I~~A~aVIIltdd 470 (677)
.+......+...+- ++.+|.||..+|+
T Consensus 102 ~~~~~i~~~~~~~~--~~~~DvVvd~~d~ 128 (355)
T PRK05597 102 VSVRRLTWSNALDE--LRDADVILDGSDN 128 (355)
T ss_pred EEEeecCHHHHHHH--HhCCCEEEECCCC
Confidence 55555444332222 4678888888853
No 254
>PRK05599 hypothetical protein; Provisional
Probab=65.49 E-value=23 Score=36.18 Aligned_cols=64 Identities=30% Similarity=0.183 Sum_probs=43.4
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 005788 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (677)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~r 455 (677)
.++|.|.+. .|..++++|. .+ ..|+++.++++..++..+++.. .....+.++..|..+.+.+++
T Consensus 2 ~vlItGas~GIG~aia~~l~-~g------~~Vil~~r~~~~~~~~~~~l~~-~~~~~~~~~~~Dv~d~~~v~~ 66 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLC-HG------EDVVLAARRPEAAQGLASDLRQ-RGATSVHVLSFDAQDLDTHRE 66 (246)
T ss_pred eEEEEeCccHHHHHHHHHHh-CC------CEEEEEeCCHHHHHHHHHHHHh-ccCCceEEEEcccCCHHHHHH
Confidence 478999877 5888999986 33 5688888888777766554321 111236677888888777655
No 255
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=65.47 E-value=73 Score=32.60 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=29.5
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
.+-||+|+|.|..|..+++.|...+. ..++++|.|.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gv-----g~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGV-----GKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCE
Confidence 46799999999999999999998753 4677777664
No 256
>PRK08628 short chain dehydrogenase; Provisional
Probab=64.68 E-value=22 Score=36.13 Aligned_cols=79 Identities=11% Similarity=0.033 Sum_probs=52.2
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
...++|.|.+. .|..++++|.+.+ ..|+++.++++.. +..+++.. .+.++.++.+|.++.+.++++--
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G------~~v~~~~r~~~~~-~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEG------AIPVIFGRSAPDD-EFAEELRA--LQPRAEFVQVDLTDDAQCRDAVEQT 77 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcC------CcEEEEcCChhhH-HHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHH
Confidence 35788888654 6889999998754 5677777766544 33332211 13467889999999988766321
Q ss_pred ----ccccEEEEecC
Q 005788 459 ----SKARAIIVLAS 469 (677)
Q Consensus 459 ----~~A~aVIIltd 469 (677)
...|.+|-.+.
T Consensus 78 ~~~~~~id~vi~~ag 92 (258)
T PRK08628 78 VAKFGRIDGLVNNAG 92 (258)
T ss_pred HHhcCCCCEEEECCc
Confidence 24677877775
No 257
>PLN02688 pyrroline-5-carboxylate reductase
Probab=64.64 E-value=64 Score=33.44 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=43.1
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLi-D~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~ 462 (677)
+|-|+|.|..|..+++.|.+.+.. ....|++. +++++..+.+.+ .++... .+... + +++||
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~--~~~~i~v~~~r~~~~~~~~~~--------~g~~~~----~~~~e---~-~~~aD 63 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVV--PPSRISTADDSNPARRDVFQS--------LGVKTA----ASNTE---V-VKSSD 63 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCC--CcceEEEEeCCCHHHHHHHHH--------cCCEEe----CChHH---H-HhcCC
Confidence 588999999999999999875410 01256777 888877654322 122211 12222 1 45789
Q ss_pred EEEEecC
Q 005788 463 AIIVLAS 469 (677)
Q Consensus 463 aVIIltd 469 (677)
.||+..+
T Consensus 64 vVil~v~ 70 (266)
T PLN02688 64 VIILAVK 70 (266)
T ss_pred EEEEEEC
Confidence 9998885
No 258
>PLN02494 adenosylhomocysteinase
Probab=64.47 E-value=21 Score=41.04 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=31.2
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHH
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEME 425 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e 425 (677)
....++|+|+|..|..+++.+...+ ..|+++|.++....
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~G------a~VIV~e~dp~r~~ 291 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAG------ARVIVTEIDPICAL 291 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC------CEEEEEeCCchhhH
Confidence 4678999999999999999887543 57888998876543
No 259
>PRK06198 short chain dehydrogenase; Provisional
Probab=64.41 E-value=24 Score=35.88 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=52.6
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeE-EEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVI-VVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~i-VVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-- 457 (677)
...++|.|.+. .|..++++|...+ .. |++++++++..+....++. ..+.++.++.+|..+++.++++=
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G------~~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERG------AAGLVICGRNAEKGEAQAAELE--ALGAKAVFVQADLSDVEDCRRVVAA 77 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC------CCeEEEEcCCHHHHHHHHHHHH--hcCCeEEEEEccCCCHHHHHHHHHH
Confidence 45688888754 6888999998654 34 8888887765554433221 11345777889999988776531
Q ss_pred ----cccccEEEEecC
Q 005788 458 ----VSKARAIIVLAS 469 (677)
Q Consensus 458 ----I~~A~aVIIltd 469 (677)
....|.+|-.+.
T Consensus 78 ~~~~~g~id~li~~ag 93 (260)
T PRK06198 78 ADEAFGRLDALVNAAG 93 (260)
T ss_pred HHHHhCCCCEEEECCC
Confidence 124678877764
No 260
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.08 E-value=24 Score=36.36 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=41.5
Q ss_pred cCeEEEEecc---chHHHHHHHHHHhcccCCCCeEEEEEcCC---hHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 005788 382 KNHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAERD---KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (677)
Q Consensus 382 knHIII~G~g---~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d---~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~r 455 (677)
...++|.|.+ ..|..++++|.+.+ ..|++++++ .+.+++..++. .+.++.++..|.++++..++
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G------~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~d~~~v~~ 76 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAG------AKLVFTYAGERLEKEVRELADTL----EGQESLLLPCDVTSDEEITA 76 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCC------CEEEEecCcccchHHHHHHHHHc----CCCceEEEecCCCCHHHHHH
Confidence 3578888974 57999999998764 567777543 34455443322 12356677788887776554
No 261
>PRK12320 hypothetical protein; Provisional
Probab=63.76 E-value=34 Score=41.31 Aligned_cols=68 Identities=22% Similarity=0.129 Sum_probs=49.0
Q ss_pred eEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 005788 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (677)
Q Consensus 384 HIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~ 462 (677)
+|+|.|. |-.|..++++|...+ +.|+.+++.+... . ..++.+++||..+.. +.++ +..+|
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G------~~Vi~ldr~~~~~----~-------~~~ve~v~~Dl~d~~-l~~a-l~~~D 62 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG------HTVSGIAQHPHDA----L-------DPRVDYVCASLRNPV-LQEL-AGEAD 62 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC------CEEEEEeCChhhc----c-------cCCceEEEccCCCHH-HHHH-hcCCC
Confidence 6899995 778999999998754 6788887654321 0 135678999999885 5433 45789
Q ss_pred EEEEecCC
Q 005788 463 AIIVLASD 470 (677)
Q Consensus 463 aVIIltdd 470 (677)
.||-++..
T Consensus 63 ~VIHLAa~ 70 (699)
T PRK12320 63 AVIHLAPV 70 (699)
T ss_pred EEEEcCcc
Confidence 99998864
No 262
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=63.44 E-value=15 Score=36.47 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=32.8
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHh
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAK 430 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~ 430 (677)
+|-|+|.|..|..++..+...+ +.|++.|.+++.++...+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G------~~V~l~d~~~~~l~~~~~~ 41 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG------YEVTLYDRSPEALERARKR 41 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT------SEEEEE-SSHHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCC------CcEEEEECChHHHHhhhhH
Confidence 5889999999999999998764 8999999999877665543
No 263
>PRK07069 short chain dehydrogenase; Validated
Probab=63.39 E-value=27 Score=35.15 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=48.5
Q ss_pred EEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCC-hHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC-----
Q 005788 385 ILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD-KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS----- 457 (677)
Q Consensus 385 III~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d-~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~----- 457 (677)
++|.|.+. .|..+++.|...+ ..|++.+++ .+..++..+++........+.++.+|..+.+.++++-
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQG------AKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAAD 75 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCC------CEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHH
Confidence 68888655 6889999998654 567777776 5544444332211111123456788999888875531
Q ss_pred -cccccEEEEecCC
Q 005788 458 -VSKARAIIVLASD 470 (677)
Q Consensus 458 -I~~A~aVIIltdd 470 (677)
....|.+|-.+..
T Consensus 76 ~~~~id~vi~~ag~ 89 (251)
T PRK07069 76 AMGGLSVLVNNAGV 89 (251)
T ss_pred HcCCccEEEECCCc
Confidence 2345777776643
No 264
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=63.13 E-value=36 Score=33.90 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=50.1
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEE-EcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc-
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVL-AERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVL-iD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I- 458 (677)
.+.++|.|.+. .|..+++.|.+.+ ..|++ ..++.+..+........ .+.++.++.+|..+.+.+.++--
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G------~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQG------ANVVINYASSEAGAEALVAEIGA--LGGKALAVQGDVSDAESVERAVDE 76 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCchhHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHH
Confidence 35788888754 6889999998764 34544 44333333333222210 13467888999999998776421
Q ss_pred -----ccccEEEEecCC
Q 005788 459 -----SKARAIIVLASD 470 (677)
Q Consensus 459 -----~~A~aVIIltdd 470 (677)
...|.+|..+..
T Consensus 77 ~~~~~~~id~vi~~ag~ 93 (248)
T PRK05557 77 AKAEFGGVDILVNNAGI 93 (248)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 256788877643
No 265
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=63.04 E-value=22 Score=40.11 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=31.1
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHH
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEME 425 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e 425 (677)
....++|+|+|..|..++..+...+ ..|+++|.|+....
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~G------a~ViV~d~dp~r~~ 232 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMG------ARVIVTEVDPIRAL 232 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCc------CEEEEEeCChhhHH
Confidence 4568999999999999998887553 67888998886543
No 266
>PRK07806 short chain dehydrogenase; Provisional
Probab=63.03 E-value=28 Score=35.10 Aligned_cols=79 Identities=22% Similarity=0.143 Sum_probs=49.4
Q ss_pred CeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 383 nHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~-e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
..++|.|.+ -.|..++++|...+ ..|+++.++. +..+....++.. .+.++.++.+|.++.+.++++-
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G------~~V~~~~r~~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAG------AHVVVNYRQKAPRANKVVAEIEA--AGGRASAVGADLTDEESVAALMDTA 78 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCC------CEEEEEeCCchHhHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 568899974 46889999998654 5666666543 233332222211 1335778999999999876531
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
....|.+|..+.
T Consensus 79 ~~~~~~~d~vi~~ag 93 (248)
T PRK07806 79 REEFGGLDALVLNAS 93 (248)
T ss_pred HHhCCCCcEEEECCC
Confidence 124677776653
No 267
>PRK06484 short chain dehydrogenase; Validated
Probab=63.00 E-value=23 Score=40.39 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=53.3
Q ss_pred ecCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc-
Q 005788 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (677)
Q Consensus 381 ~knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I- 458 (677)
..++++|.|.+. .|..++++|...+ ..|++++++++..++..++. +.++.++.+|.++++.++++--
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~ 336 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAG------DRLLIIDRDAEGAKKLAEAL-----GDEHLSVQADITDEAAVESAFAQ 336 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHh-----CCceeEEEccCCCHHHHHHHHHH
Confidence 346788888776 5889999998764 57888898887776655432 2355678899998887665321
Q ss_pred -----ccccEEEEecC
Q 005788 459 -----SKARAIIVLAS 469 (677)
Q Consensus 459 -----~~A~aVIIltd 469 (677)
..-|.+|-.+.
T Consensus 337 ~~~~~g~id~li~nAg 352 (520)
T PRK06484 337 IQARWGRLDVLVNNAG 352 (520)
T ss_pred HHHHcCCCCEEEECCC
Confidence 23466665543
No 268
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=62.96 E-value=54 Score=38.41 Aligned_cols=83 Identities=16% Similarity=0.114 Sum_probs=57.6
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc-
Q 005788 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS- 459 (677)
Q Consensus 382 knHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~- 459 (677)
...|+|.|.| ..|.++++|+...+. ..+++.+.|+-.+..+..++...+...++.++-||..|.+-++++==+
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p-----~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNP-----KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCC-----CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC
Confidence 4556666665 469999999998864 578888988766555444443333356788999999999999886322
Q ss_pred cccEEEEecC
Q 005788 460 KARAIIVLAS 469 (677)
Q Consensus 460 ~A~aVIIltd 469 (677)
+-|.|+=.+-
T Consensus 325 kvd~VfHAAA 334 (588)
T COG1086 325 KVDIVFHAAA 334 (588)
T ss_pred CCceEEEhhh
Confidence 3666665443
No 269
>PRK08226 short chain dehydrogenase; Provisional
Probab=62.91 E-value=30 Score=35.30 Aligned_cols=79 Identities=14% Similarity=0.013 Sum_probs=51.7
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.++++|.|.+. .|..+++.|...+ ..|++++++.+. ++..++... .+.++.++.+|..+++.++++-
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G------~~Vv~~~r~~~~-~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~ 76 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHG------ANLILLDISPEI-EKLADELCG--RGHRCTAVVADVRDPASVAAAIKRA 76 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC------CEEEEecCCHHH-HHHHHHHHH--hCCceEEEECCCCCHHHHHHHHHHH
Confidence 46788888765 6889999998754 578888887642 222222211 1346778899999998877641
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
...-|.+|-.+.
T Consensus 77 ~~~~~~id~vi~~ag 91 (263)
T PRK08226 77 KEKEGRIDILVNNAG 91 (263)
T ss_pred HHHcCCCCEEEECCC
Confidence 124567776554
No 270
>PLN02686 cinnamoyl-CoA reductase
Probab=62.90 E-value=24 Score=38.71 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=50.2
Q ss_pred ecCeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc-c---cCCccEEEEEeCCCCHHHHhc
Q 005788 381 EKNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF-D---FMGTSVICRSGSPLILADLKK 455 (677)
Q Consensus 381 ~knHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~-~---~~~~~V~~I~Gd~~~~e~L~r 455 (677)
....|+|.|.+ -.|..++++|...+ +.|+++.++.+..+.+ +++.. . ....++.++.||.++.+.+.+
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G------~~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~ 124 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHG------YSVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHE 124 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHH
Confidence 45678999885 46889999998764 5666655554443332 11100 0 001257789999999998876
Q ss_pred cCcccccEEEEec
Q 005788 456 VSVSKARAIIVLA 468 (677)
Q Consensus 456 A~I~~A~aVIIlt 468 (677)
+ ++.++.++-++
T Consensus 125 ~-i~~~d~V~hlA 136 (367)
T PLN02686 125 A-FDGCAGVFHTS 136 (367)
T ss_pred H-HHhccEEEecC
Confidence 4 45677776544
No 271
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=62.77 E-value=22 Score=38.42 Aligned_cols=78 Identities=19% Similarity=0.068 Sum_probs=51.0
Q ss_pred CeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc-c
Q 005788 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS-K 460 (677)
Q Consensus 383 nHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~-~ 460 (677)
.+++|.|. |-.|..+++.|...+ +.|+.++++++.......... .+.++.++.||..+.+.++++--+ +
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G------~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELG------AEVYGYSLDPPTSPNLFELLN---LAKKIEDHFGDIRDAAKLRKAIAEFK 75 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCC------CEEEEEeCCCccchhHHHHHh---hcCCceEEEccCCCHHHHHHHHhhcC
Confidence 57899997 447999999999764 567777766543222211111 022466789999999988764222 3
Q ss_pred ccEEEEecC
Q 005788 461 ARAIIVLAS 469 (677)
Q Consensus 461 A~aVIIltd 469 (677)
.|.||-++.
T Consensus 76 ~d~vih~A~ 84 (349)
T TIGR02622 76 PEIVFHLAA 84 (349)
T ss_pred CCEEEECCc
Confidence 688887775
No 272
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=62.73 E-value=2.1 Score=39.93 Aligned_cols=55 Identities=9% Similarity=0.167 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhhccCCCCccCCCCCeEEeeeehhhhHHHHHHHHHHHHHHHHHh
Q 005788 314 FAEALWLSWTFVADSGNHADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISEK 368 (677)
Q Consensus 314 ~~dAlw~t~vTiTTvGyg~~p~t~~gRi~~v~lil~Gi~ifa~lig~it~~i~~~ 368 (677)
+.+++|+++.++..-|....|.+..+|++.+++.++++++.+...+.++..+...
T Consensus 45 ~~~~~~~~~~~~~~q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 45 LSNSFWYTFGTLLQQGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp HHHHHHHCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6777877776666544445578888999999888888888887777777766553
No 273
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.46 E-value=37 Score=36.95 Aligned_cols=84 Identities=20% Similarity=0.135 Sum_probs=56.0
Q ss_pred ecCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc-C-
Q 005788 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV-S- 457 (677)
Q Consensus 381 ~knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA-~- 457 (677)
...|++|.|..+ .|..++.++..++ ..|.++-++.+.++++.+.+.......+|.+..+|..+.+.-..+ +
T Consensus 32 ~~~hi~itggS~glgl~la~e~~~~g------a~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~ 105 (331)
T KOG1210|consen 32 PRRHILITGGSSGLGLALALECKREG------ADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEE 105 (331)
T ss_pred ccceEEEecCcchhhHHHHHHHHHcc------CceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhh
Confidence 459999999887 4677888888764 688888888888877766554333334577888988666553332 1
Q ss_pred c----ccccEEEEecCC
Q 005788 458 V----SKARAIIVLASD 470 (677)
Q Consensus 458 I----~~A~aVIIltdd 470 (677)
. ---|.+|..++.
T Consensus 106 l~~~~~~~d~l~~cAG~ 122 (331)
T KOG1210|consen 106 LRDLEGPIDNLFCCAGV 122 (331)
T ss_pred hhhccCCcceEEEecCc
Confidence 1 123566666654
No 274
>PRK12827 short chain dehydrogenase; Provisional
Probab=62.40 E-value=28 Score=34.83 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=52.2
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcC----ChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAER----DKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~----d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA 456 (677)
...++|.|.+. .|..++++|...+ ..|++++. +.+..++...+.. ..+.++.++.+|..+.+.++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g------~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~ 77 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADG------ADVIVLDIHPMRGRAEADAVAAGIE--AAGGKALGLAFDVRDFAATRAA 77 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CeEEEEcCcccccHHHHHHHHHHHH--hcCCcEEEEEccCCCHHHHHHH
Confidence 35789998765 6888999998754 56666543 3444443333221 1134678899999999888764
Q ss_pred C------cccccEEEEecCC
Q 005788 457 S------VSKARAIIVLASD 470 (677)
Q Consensus 457 ~------I~~A~aVIIltdd 470 (677)
- ....+.+|-.+..
T Consensus 78 ~~~~~~~~~~~d~vi~~ag~ 97 (249)
T PRK12827 78 LDAGVEEFGRLDILVNNAGI 97 (249)
T ss_pred HHHHHHHhCCCCEEEECCCC
Confidence 2 1357888877653
No 275
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=62.20 E-value=97 Score=32.98 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=30.1
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
.+-||+|+|.|-+|..+++.|...+- ..+.|+|.|.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GV-----g~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGI-----GAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCE
Confidence 57899999999999999999998753 3578888774
No 276
>PRK07041 short chain dehydrogenase; Provisional
Probab=62.19 E-value=23 Score=35.31 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=52.1
Q ss_pred EEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--ccccc
Q 005788 386 LILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--VSKAR 462 (677)
Q Consensus 386 II~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--I~~A~ 462 (677)
+|.|.+. .|..++++|.+.+ ..|++++++++..+....+.. .+.++.++.+|.++.+.++++- +.+.+
T Consensus 1 lItGas~~iG~~~a~~l~~~G------~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~id 71 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEG------ARVTIASRSRDRLAAAARALG---GGAPVRTAALDITDEAAVDAFFAEAGPFD 71 (230)
T ss_pred CeecCCChHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHhcCCCC
Confidence 4666654 5888999998753 678888888777665443321 1346778899999999887742 23457
Q ss_pred EEEEecCC
Q 005788 463 AIIVLASD 470 (677)
Q Consensus 463 aVIIltdd 470 (677)
.+|-.+..
T Consensus 72 ~li~~ag~ 79 (230)
T PRK07041 72 HVVITAAD 79 (230)
T ss_pred EEEECCCC
Confidence 77776643
No 277
>PRK07680 late competence protein ComER; Validated
Probab=62.03 E-value=2.1e+02 Score=29.95 Aligned_cols=104 Identities=10% Similarity=0.134 Sum_probs=58.8
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~a 463 (677)
+|-|+|.|..|..+++.|...+. -....|.+.+++++..+.+.+++ .++.. . .+.+.+ +.+||.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~--~~~~~v~v~~r~~~~~~~~~~~~------~g~~~---~-~~~~~~----~~~aDi 65 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGA--VKPSQLTITNRTPAKAYHIKERY------PGIHV---A-KTIEEV----ISQSDL 65 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCC--CCcceEEEECCCHHHHHHHHHHc------CCeEE---E-CCHHHH----HHhCCE
Confidence 48899999999999999986531 01136888999887766543321 12221 1 122222 357899
Q ss_pred EEEecCCCCCccchHHHHHHHHHHhh-hcCCCCceEEEEeCCCCCHHHHHH
Q 005788 464 IIVLASDENADQSDARALRVVLSLTG-VKEGLRGHVVVEMSDLDNEPLVKL 513 (677)
Q Consensus 464 VIIltdd~~~~~sDa~NI~i~Lsar~-l~p~l~~~IIArv~d~e~~~~l~~ 513 (677)
||+.... .+... ++-.++. +.+ ..+|+-+...-..+.++.
T Consensus 66 Vilav~p-----~~~~~--vl~~l~~~l~~---~~~iis~~ag~~~~~L~~ 106 (273)
T PRK07680 66 IFICVKP-----LDIYP--LLQKLAPHLTD---EHCLVSITSPISVEQLET 106 (273)
T ss_pred EEEecCH-----HHHHH--HHHHHHhhcCC---CCEEEEECCCCCHHHHHH
Confidence 9888852 22222 2212222 222 246666666556666654
No 278
>PLN00198 anthocyanidin reductase; Provisional
Probab=61.97 E-value=28 Score=37.29 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=50.2
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHH--HHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD--IAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~--l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I 458 (677)
+..|+|.|.+. .|..++++|...+ ..|+++..+.+..... +..+ . ...++.++.||..+.+.+.++ +
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g------~~V~~~~r~~~~~~~~~~~~~~--~-~~~~~~~~~~Dl~d~~~~~~~-~ 78 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKG------YAVNTTVRDPENQKKIAHLRAL--Q-ELGDLKIFGADLTDEESFEAP-I 78 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCC------CEEEEEECCCCCHHHHHHHHhc--C-CCCceEEEEcCCCChHHHHHH-H
Confidence 45689998654 6889999998764 4555444443222111 1111 0 012578899999999887764 3
Q ss_pred ccccEEEEecCC
Q 005788 459 SKARAIIVLASD 470 (677)
Q Consensus 459 ~~A~aVIIltdd 470 (677)
+++|.||-++..
T Consensus 79 ~~~d~vih~A~~ 90 (338)
T PLN00198 79 AGCDLVFHVATP 90 (338)
T ss_pred hcCCEEEEeCCC
Confidence 468999988864
No 279
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=61.96 E-value=19 Score=41.42 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=31.0
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHH
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEM 424 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~ 424 (677)
....++|+|+|..|..+++.+...+ ..|+++|.++...
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~G------a~ViV~e~dp~~a 290 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFG------ARVVVTEIDPICA 290 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC------CEEEEEeCCchhH
Confidence 4678999999999999999997653 6788898887654
No 280
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=61.90 E-value=79 Score=32.04 Aligned_cols=40 Identities=33% Similarity=0.372 Sum_probs=32.1
Q ss_pred eEEEEe-ccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHH
Q 005788 384 HILILG-WSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (677)
Q Consensus 384 HIII~G-~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~ 429 (677)
+|.|+| .|..|..++..|...+ +.|++.+++++..+...+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G------~~V~v~~r~~~~~~~l~~ 42 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG------NKIIIGSRDLEKAEEAAA 42 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC------CEEEEEEcCHHHHHHHHH
Confidence 488997 8999999999998753 678888988887766544
No 281
>PRK07201 short chain dehydrogenase; Provisional
Probab=61.48 E-value=25 Score=41.35 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=57.0
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
..+++|.|.+. .|..++++|...+ ..|++++++++..++..++... .+.++.++.+|..+.+.++++--
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G------~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~~~~~~~~~ 442 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAG------ATVFLVARNGEALDELVAEIRA--KGGTAHAYTCDLTDSAAVDHTVKDI 442 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHHH
Confidence 45788888765 6889999998754 6788888888777665543321 13468889999999998776421
Q ss_pred ----ccccEEEEecC
Q 005788 459 ----SKARAIIVLAS 469 (677)
Q Consensus 459 ----~~A~aVIIltd 469 (677)
...|.+|-.+.
T Consensus 443 ~~~~g~id~li~~Ag 457 (657)
T PRK07201 443 LAEHGHVDYLVNNAG 457 (657)
T ss_pred HHhcCCCCEEEECCC
Confidence 25678887665
No 282
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.13 E-value=26 Score=39.87 Aligned_cols=71 Identities=10% Similarity=0.032 Sum_probs=45.1
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChH-HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e-~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
..+++|+|.|..|..+++.|...+ ..|+++|..++ ..+...+.+ ...++.+..|+... ....
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G------~~V~~~d~~~~~~~~~~~~~l----~~~gv~~~~~~~~~-------~~~~ 78 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELG------ARVTVVDDGDDERHRALAAIL----EALGATVRLGPGPT-------LPED 78 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC------CEEEEEeCCchhhhHHHHHHH----HHcCCEEEECCCcc-------ccCC
Confidence 468999999999999988887543 67888885442 222211111 12367777776443 2346
Q ss_pred ccEEEEecC
Q 005788 461 ARAIIVLAS 469 (677)
Q Consensus 461 A~aVIIltd 469 (677)
+|.||+.+.
T Consensus 79 ~D~Vv~s~G 87 (480)
T PRK01438 79 TDLVVTSPG 87 (480)
T ss_pred CCEEEECCC
Confidence 888777654
No 283
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=61.00 E-value=78 Score=34.32 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=62.6
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhh--cccCCccEEEEEeCCCCHHHHhccCcc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE--FDFMGTSVICRSGSPLILADLKKVSVS 459 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~--~~~~~~~V~~I~Gd~~~~e~L~rA~I~ 459 (677)
+.+|.|+|.|.+|..++-.|...+ ....++|+|.+++..+....++. ..+.... -+.+. .+.++ +.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~----~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~--~v~~~-~dy~~-----~~ 70 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKG----LADELVLVDVVEDKLKGEAMDLQHGSAFLKNP--KIEAD-KDYSV-----TA 70 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC----CCCEEEEEeCCccHHHHHHHHHHHhhccCCCC--EEEEC-CCHHH-----hC
Confidence 568999999999999988776543 34679999987654443333332 1121211 22321 23333 56
Q ss_pred cccEEEEecCCC-CC--ccch--HHHHHHH----HHHhhhcCCCCceEEEEeCCCCCH
Q 005788 460 KARAIIVLASDE-NA--DQSD--ARALRVV----LSLTGVKEGLRGHVVVEMSDLDNE 508 (677)
Q Consensus 460 ~A~aVIIltdd~-~~--~~sD--a~NI~i~----Lsar~l~p~l~~~IIArv~d~e~~ 508 (677)
+||.||+++... .+ +..| ..|+.++ -.+++++| + -++.-+.||-+.
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p--~-~~vivvsNP~d~ 125 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSP--N-AILLVVSNPVDI 125 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC--C-cEEEEccChHHH
Confidence 889999977652 11 2222 3354433 23444554 3 245556677654
No 284
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=60.97 E-value=28 Score=36.17 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=49.9
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc-------------------ccCCccEEEEE
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF-------------------DFMGTSVICRS 444 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~-------------------~~~~~~V~~I~ 444 (677)
+|+|+|.|..|.++++.|...+- ..++++|.|.-+...+-+++.+ -....++..+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-----g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~ 75 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-----GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQ 75 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEe
Confidence 58999999999999999988753 3577777764332222111110 01123466666
Q ss_pred eCCCCHHHHhccCcccccEEEEecCC
Q 005788 445 GSPLILADLKKVSVSKARAIIVLASD 470 (677)
Q Consensus 445 Gd~~~~e~L~rA~I~~A~aVIIltdd 470 (677)
++..+++++...-.++.|.||...|+
T Consensus 76 ~~i~~~~~~~~~f~~~~DvVi~a~Dn 101 (234)
T cd01484 76 NKVGPEQDFNDTFFEQFHIIVNALDN 101 (234)
T ss_pred ccCChhhhchHHHHhCCCEEEECCCC
Confidence 76654444434446677887777753
No 285
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=60.88 E-value=1.2e+02 Score=33.02 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=45.3
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhh-cccCCccEEEEEeCCCCHHHHhccCcc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE-FDFMGTSVICRSGSPLILADLKKVSVS 459 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~-~~~~~~~V~~I~Gd~~~~e~L~rA~I~ 459 (677)
...+|.|+|.|..|..++..|...+ . +++...+++..+.+.+... .++...++. +..+..-..++..+ ++
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g------~-v~l~~~~~~~~~~i~~~~~~~~~l~~~~~-l~~~i~~t~d~~~a-~~ 76 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG------P-TLQWVRSAETADDINDNHRNSRYLGNDVV-LSDTLRATTDFAEA-AN 76 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC------C-EEEEeCCHHHHHHHHhcCCCcccCCCCcc-cCCCeEEECCHHHH-Hh
Confidence 3467999999999999999888653 3 4455577877766543210 011110111 00111111233332 57
Q ss_pred cccEEEEecC
Q 005788 460 KARAIIVLAS 469 (677)
Q Consensus 460 ~A~aVIIltd 469 (677)
.||.||+..+
T Consensus 77 ~aDlVilavp 86 (341)
T PRK12439 77 CADVVVMGVP 86 (341)
T ss_pred cCCEEEEEeC
Confidence 8899999886
No 286
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=60.83 E-value=24 Score=37.48 Aligned_cols=80 Identities=16% Similarity=0.037 Sum_probs=48.8
Q ss_pred eEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC-cccc
Q 005788 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-VSKA 461 (677)
Q Consensus 384 HIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-I~~A 461 (677)
.++|.|. |-.|..++++|...+ +.|+++++..+.......... ...+.++.++.||..+.+.+.++= -..+
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g------~~V~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNG------HDVVILDNLCNSKRSVLPVIE-RLGGKHPTFVEGDIRNEALLTEILHDHAI 74 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCC------CeEEEEecCCCchHhHHHHHH-HhcCCCceEEEccCCCHHHHHHHHhcCCC
Confidence 5889995 667899999998764 566666532111111111000 011234677899999998877642 2358
Q ss_pred cEEEEecCC
Q 005788 462 RAIIVLASD 470 (677)
Q Consensus 462 ~aVIIltdd 470 (677)
|.||-++..
T Consensus 75 d~vvh~a~~ 83 (338)
T PRK10675 75 DTVIHFAGL 83 (338)
T ss_pred CEEEECCcc
Confidence 888887643
No 287
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=60.63 E-value=23 Score=39.95 Aligned_cols=72 Identities=22% Similarity=0.276 Sum_probs=55.9
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
...+++|+|+|+.+.-+++.|...+. ..|+++.+..+..+++..++ + |.+...+.|. ..+..
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~-----~~i~IaNRT~erA~~La~~~-------~-----~~~~~l~el~-~~l~~ 238 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV-----KKITIANRTLERAEELAKKL-------G-----AEAVALEELL-EALAE 238 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC-----CEEEEEcCCHHHHHHHHHHh-------C-----CeeecHHHHH-Hhhhh
Confidence 35789999999999999999997652 67889999999888876643 1 4555555554 35779
Q ss_pred ccEEEEecCC
Q 005788 461 ARAIIVLASD 470 (677)
Q Consensus 461 A~aVIIltdd 470 (677)
||.||..|..
T Consensus 239 ~DvVissTsa 248 (414)
T COG0373 239 ADVVISSTSA 248 (414)
T ss_pred CCEEEEecCC
Confidence 9999999865
No 288
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=60.48 E-value=32 Score=35.13 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=48.7
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
...++|.|.+. .|..++++|...+ ..|+++.++ +..++..+... . .+.++.++.+|..+.+.++++-
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G------~~v~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~D~~~~~~i~~~~~~~ 85 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAG------ADIIITTHG-TNWDETRRLIE-K-EGRKVTFVQVDLTKPESAEKVVKEA 85 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCC-cHHHHHHHHHH-h-cCCceEEEEcCCCCHHHHHHHHHHH
Confidence 35678888765 5889999998754 567777766 23333222111 0 1345778899999988765531
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
....|.+|-.+.
T Consensus 86 ~~~~g~id~li~~ag 100 (258)
T PRK06935 86 LEEFGKIDILVNNAG 100 (258)
T ss_pred HHHcCCCCEEEECCC
Confidence 124577776554
No 289
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=60.35 E-value=37 Score=35.88 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=44.7
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~a 463 (677)
+|-|+|.|..|..++..|...+ +.|++.|++++..+.+.+. +.. ...+.+ + -+++||.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G------~~V~~~dr~~~~~~~~~~~--------g~~----~~~~~~---~-~~~~aDi 58 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG------YQLHVTTIGPEVADELLAA--------GAV----TAETAR---Q-VTEQADV 58 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC------CeEEEEcCCHHHHHHHHHC--------CCc----ccCCHH---H-HHhcCCE
Confidence 3678999999999999998754 6889999998877765331 111 012222 2 2357899
Q ss_pred EEEecCC
Q 005788 464 IIVLASD 470 (677)
Q Consensus 464 VIIltdd 470 (677)
||+..++
T Consensus 59 vi~~vp~ 65 (291)
T TIGR01505 59 IFTMVPD 65 (291)
T ss_pred EEEecCC
Confidence 9998863
No 290
>PLN02602 lactate dehydrogenase
Probab=60.20 E-value=68 Score=35.41 Aligned_cols=111 Identities=11% Similarity=0.144 Sum_probs=62.6
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc--ccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF--DFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~--~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
.+|.|+|.|.+|..++-.|...+ -...++|+|.+++..+....++.. .+.+. + -+.+. .+.++ +++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~----l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~-~-~i~~~-~dy~~-----~~d 105 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQD----LADELALVDVNPDKLRGEMLDLQHAAAFLPR-T-KILAS-TDYAV-----TAG 105 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC----CCCEEEEEeCCCchhhHHHHHHHhhhhcCCC-C-EEEeC-CCHHH-----hCC
Confidence 59999999999999988777543 235799999877544333322211 12121 2 33432 12332 668
Q ss_pred ccEEEEecCCCC-C--ccch--HHHHHH----HHHHhhhcCCCCceEEEEeCCCCCH
Q 005788 461 ARAIIVLASDEN-A--DQSD--ARALRV----VLSLTGVKEGLRGHVVVEMSDLDNE 508 (677)
Q Consensus 461 A~aVIIltdd~~-~--~~sD--a~NI~i----~Lsar~l~p~l~~~IIArv~d~e~~ 508 (677)
||.||+++.... + +..| ..|+.+ +-.+++.+| + -++.-+.||.+.
T Consensus 106 aDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p--~-~ivivvtNPvdv 159 (350)
T PLN02602 106 SDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSP--D-TILLIVSNPVDV 159 (350)
T ss_pred CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC--C-eEEEEecCchHH
Confidence 999999877521 1 1122 224322 334445555 3 255566687764
No 291
>PRK12937 short chain dehydrogenase; Provisional
Probab=60.06 E-value=42 Score=33.61 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=50.8
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcC-ChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAER-DKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~-d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-- 457 (677)
..+++|.|.+. .|..++++|.+.+ ..++++.. +++..++..++... .+.++.++..|..+.+.++++=
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g------~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADG------FAVAVNYAGSAAAADELVAEIEA--AGGRAIAVQADVADAAAVTRLFDA 76 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEecCCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHH
Confidence 46789998754 6889999998764 45555543 33333333332211 1346788899999988876642
Q ss_pred ----cccccEEEEecC
Q 005788 458 ----VSKARAIIVLAS 469 (677)
Q Consensus 458 ----I~~A~aVIIltd 469 (677)
..+.|.+|-.+.
T Consensus 77 ~~~~~~~id~vi~~ag 92 (245)
T PRK12937 77 AETAFGRIDVLVNNAG 92 (245)
T ss_pred HHHHcCCCCEEEECCC
Confidence 135788887765
No 292
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=60.05 E-value=21 Score=40.30 Aligned_cols=72 Identities=21% Similarity=0.294 Sum_probs=49.3
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
...+++|+|.|..|..+++.|...+ ...|++++++++..+....++ + ++....+++.+ .+.+
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G-----~~~V~v~~r~~~ra~~la~~~-----g-------~~~~~~~~~~~-~l~~ 242 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKG-----VRKITVANRTLERAEELAEEF-----G-------GEAIPLDELPE-ALAE 242 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCC-----CCeEEEEeCCHHHHHHHHHHc-----C-------CcEeeHHHHHH-Hhcc
Confidence 3578999999999999999887543 236888899887766554432 1 11223344543 3568
Q ss_pred ccEEEEecCC
Q 005788 461 ARAIIVLASD 470 (677)
Q Consensus 461 A~aVIIltdd 470 (677)
||.||..+..
T Consensus 243 aDvVI~aT~s 252 (423)
T PRK00045 243 ADIVISSTGA 252 (423)
T ss_pred CCEEEECCCC
Confidence 9999999865
No 293
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.91 E-value=36 Score=34.30 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=41.1
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLi-D~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA 456 (677)
+.++|.|.+. .|..+++.|.+.+ ..|+++ .++++..+.+..+. +.++.++.+|..+++.++++
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G------~~vv~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~ 70 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREG------ARVVVNYHQSEDAAEALADEL-----GDRAIALQADVTDREQVQAM 70 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCC------CeEEEEcCCCHHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHH
Confidence 4688888654 6888999998754 456554 44454444433321 23677888999888877654
No 294
>PRK07023 short chain dehydrogenase; Provisional
Probab=59.60 E-value=24 Score=35.66 Aligned_cols=59 Identities=17% Similarity=0.066 Sum_probs=41.2
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 005788 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (677)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~r 455 (677)
+++|.|.+. .|..++++|.+.+ ..|++++++.+. ..... .+.++.++.+|..+.+.+++
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G------~~v~~~~r~~~~--~~~~~-----~~~~~~~~~~D~~~~~~~~~ 62 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPG------IAVLGVARSRHP--SLAAA-----AGERLAEVELDLSDAAAAAA 62 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCC------CEEEEEecCcch--hhhhc-----cCCeEEEEEeccCCHHHHHH
Confidence 689999855 6889999998653 567777766432 11111 13467888999999988877
No 295
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=59.51 E-value=37 Score=34.67 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=47.2
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~-e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
..++|.|.+. .|..++++|.+.+ ..|++++++. +...+.++. .+.++.++.+|.++++..+++-
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G------~~vv~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAG------ADIVGVGVAEAPETQAQVEA-----LGRKFHFITADLIQQKDIDSIVSQA 77 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CEEEEecCchHHHHHHHHHH-----cCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 4678888766 5889999998764 5677776643 222222221 1346778889999888876542
Q ss_pred ---cccccEEEEec
Q 005788 458 ---VSKARAIIVLA 468 (677)
Q Consensus 458 ---I~~A~aVIIlt 468 (677)
..+-|.+|-.+
T Consensus 78 ~~~~g~iD~lv~~a 91 (251)
T PRK12481 78 VEVMGHIDILINNA 91 (251)
T ss_pred HHHcCCCCEEEECC
Confidence 12356666554
No 296
>PRK05855 short chain dehydrogenase; Validated
Probab=59.25 E-value=30 Score=39.52 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=55.6
Q ss_pred ecCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc-
Q 005788 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (677)
Q Consensus 381 ~knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I- 458 (677)
...+++|.|.+. .|..++++|...+ ..|++++++.+..++..+.... .+.++.++.+|.++.+.++++--
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~~~~~~~~ 385 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREG------AEVVASDIDEAAAERTAELIRA--AGAVAHAYRVDVSDADAMEAFAEW 385 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHH
Confidence 457889998755 6889999998754 6788889888766654433211 13467888999999888765321
Q ss_pred -----ccccEEEEecCC
Q 005788 459 -----SKARAIIVLASD 470 (677)
Q Consensus 459 -----~~A~aVIIltdd 470 (677)
..-|.+|-.+..
T Consensus 386 ~~~~~g~id~lv~~Ag~ 402 (582)
T PRK05855 386 VRAEHGVPDIVVNNAGI 402 (582)
T ss_pred HHHhcCCCcEEEECCcc
Confidence 235677666543
No 297
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=59.13 E-value=13 Score=31.29 Aligned_cols=28 Identities=14% Similarity=-0.054 Sum_probs=24.4
Q ss_pred eEEEEccccCHHHHHHHHHhhcCCccEEEEE
Q 005788 644 KILFCGWRRDIDDMIMVIFLQLCLLSLVHLH 674 (677)
Q Consensus 644 rVLI~Gwgr~~~~~i~~Ld~~~~~~~~~~~~ 674 (677)
||+|+|+|-++-+++..|.+ .|.+|||.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~---~g~~vtli 28 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE---LGKEVTLI 28 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH---TTSEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHH---hCcEEEEE
Confidence 68999999999999999975 56788775
No 298
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=59.13 E-value=49 Score=33.72 Aligned_cols=35 Identities=20% Similarity=0.104 Sum_probs=29.5
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCC
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d 420 (677)
.+.||+|+|.|-.|..+++.|...+. ..++++|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gv-----g~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGV-----GNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCC
Confidence 57899999999999999999987753 457788877
No 299
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=58.96 E-value=33 Score=36.57 Aligned_cols=76 Identities=12% Similarity=0.151 Sum_probs=49.5
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..+++|+|.|..+..++..|...+- ..|+++++++++.+.+.+++...+. .+.+ ... +.+. ..+.+|
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~-----~~I~I~nR~~~ka~~la~~l~~~~~--~~~~-~~~----~~~~-~~~~~a 193 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGV-----ERLTIFDVDPARAAALADELNARFP--AARA-TAG----SDLA-AALAAA 193 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEECCCHHHHHHHHHHHHhhCC--CeEE-Eec----cchH-hhhCCC
Confidence 4689999999999999999987642 3688999999888877654421111 1111 111 1111 124568
Q ss_pred cEEEEecCC
Q 005788 462 RAIIVLASD 470 (677)
Q Consensus 462 ~aVIIltdd 470 (677)
|.||-.|+-
T Consensus 194 DiVInaTp~ 202 (284)
T PRK12549 194 DGLVHATPT 202 (284)
T ss_pred CEEEECCcC
Confidence 988888754
No 300
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=58.66 E-value=92 Score=33.56 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=59.4
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHH-HHhhhcc-cCCccEEEEEeCCCCHHHHhccCccc
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD-IAKLEFD-FMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~-l~~~~~~-~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
.+|.|+|.|..|..++..|...+ .. .|+++|.+++..+.. .+..+.. ..... ..+... .+ ++. +.+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g----~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~-~~i~~t-~d---~~~--~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKE----LA-DLVLLDVVEGIPQGKALDMYEASPVGGFD-TKVTGT-NN---YAD--TAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcC----CC-eEEEEeCCCChhHHHHHhhhhhhhccCCC-cEEEec-CC---HHH--hCC
Confidence 57999999999999998887643 12 699999865433211 1111100 00011 112221 22 222 478
Q ss_pred ccEEEEecCCC-CCccc--h--HHHHHHHH----HHhhhcCCCCceEEEEeCCCCCH
Q 005788 461 ARAIIVLASDE-NADQS--D--ARALRVVL----SLTGVKEGLRGHVVVEMSDLDNE 508 (677)
Q Consensus 461 A~aVIIltdd~-~~~~s--D--a~NI~i~L----sar~l~p~l~~~IIArv~d~e~~ 508 (677)
||.||+..+.. .++++ | ..|..++. .+++.++ + .+|.-+.||.+.
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p--~-~~iIv~tNP~di 123 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP--N-PIIVVVSNPLDA 123 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC--C-eEEEEecCcHHH
Confidence 99999998752 12111 1 23544433 2344444 3 356667787664
No 301
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=58.57 E-value=25 Score=39.76 Aligned_cols=72 Identities=21% Similarity=0.282 Sum_probs=50.9
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..+++|+|.|..+..+++.|...+ ...+.++.++.+..+.+.+++. + +.....++|.+ -+.+|
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g-----~~~I~V~nRt~~ra~~La~~~~----~-------~~~~~~~~l~~-~l~~a 243 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALA-----PKQIMLANRTIEKAQKITSAFR----N-------ASAHYLSELPQ-LIKKA 243 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcC-----CCEEEEECCCHHHHHHHHHHhc----C-------CeEecHHHHHH-HhccC
Confidence 457999999999999999998654 2478899999887776654321 0 22233445533 36689
Q ss_pred cEEEEecCC
Q 005788 462 RAIIVLASD 470 (677)
Q Consensus 462 ~aVIIltdd 470 (677)
|.||..|..
T Consensus 244 DiVI~aT~a 252 (414)
T PRK13940 244 DIIIAAVNV 252 (414)
T ss_pred CEEEECcCC
Confidence 999999964
No 302
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.49 E-value=39 Score=34.15 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=49.9
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCC-hHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD-KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d-~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA---- 456 (677)
..++|.|.+. .|..++++|...+ ..|+++++. .+..++..+.... .+.++.++.+|.++++.+.++
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g------~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAG------FDLAINDRPDDEELAATQQELRA--LGVEVIFFPADVADLSAHEAMLDAA 74 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC------CEEEEEecCchhHHHHHHHHHHh--cCCceEEEEecCCCHHHHHHHHHHH
Confidence 4578888765 5888999998754 567777643 3333333332210 123678899999998877653
Q ss_pred --CcccccEEEEecC
Q 005788 457 --SVSKARAIIVLAS 469 (677)
Q Consensus 457 --~I~~A~aVIIltd 469 (677)
.....|.+|-.+.
T Consensus 75 ~~~~~~id~vi~~ag 89 (256)
T PRK12745 75 QAAWGRIDCLVNNAG 89 (256)
T ss_pred HHhcCCCCEEEECCc
Confidence 1135688887764
No 303
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=58.37 E-value=38 Score=33.88 Aligned_cols=78 Identities=12% Similarity=0.000 Sum_probs=49.7
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEE-EcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--C--
Q 005788 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVL-AERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S-- 457 (677)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVL-iD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA--~-- 457 (677)
-++|.|.+. .|..++++|.+.+ ..|++ ..++++..++...+... .+.++.++.+|..+++.++++ .
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g------~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~i~~~~~~~~ 74 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEG------YTVAVNYQQNLHAAQEVVNLITQ--AGGKAFVLQADISDENQVVAMFTAID 74 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCChHHHHHHHHHHHh--CCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 478888754 6889999998754 45544 45666555544433211 134577899999999887653 1
Q ss_pred --cccccEEEEecC
Q 005788 458 --VSKARAIIVLAS 469 (677)
Q Consensus 458 --I~~A~aVIIltd 469 (677)
....|.+|-.+.
T Consensus 75 ~~~~~id~vi~~ag 88 (247)
T PRK09730 75 QHDEPLAALVNNAG 88 (247)
T ss_pred HhCCCCCEEEECCC
Confidence 234567776664
No 304
>PRK06720 hypothetical protein; Provisional
Probab=58.27 E-value=46 Score=32.59 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=41.5
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~r 455 (677)
...++|.|.+. .|..++++|...+ ..|++++++.+..++..+++. . .+..+.++..|..+.+.+++
T Consensus 16 gk~~lVTGa~~GIG~aia~~l~~~G------~~V~l~~r~~~~~~~~~~~l~-~-~~~~~~~~~~Dl~~~~~v~~ 82 (169)
T PRK06720 16 GKVAIVTGGGIGIGRNTALLLAKQG------AKVIVTDIDQESGQATVEEIT-N-LGGEALFVSYDMEKQGDWQR 82 (169)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCC------CEEEEEECCHHHHHHHHHHHH-h-cCCcEEEEEccCCCHHHHHH
Confidence 45677778765 6889999998754 578888887766554433321 0 12234556677766665544
No 305
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=58.13 E-value=1e+02 Score=34.39 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=29.5
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
.+-+|+|+|.|..|..+++.|...+- ..++++|.|.
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gv-----g~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGV-----GTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCE
Confidence 46799999999999999999998763 3577777664
No 306
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=58.10 E-value=43 Score=33.50 Aligned_cols=79 Identities=9% Similarity=-0.031 Sum_probs=49.7
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChH-HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e-~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.+++|.|.+. .|..++++|...+ ..|++++++.+ ..++...... ..+.++.++.+|..+.+.++++-
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g------~~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~ 74 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDG------YRVIATYFSGNDCAKDWFEEYG--FTEDQVRLKELDVTDTEECAEALAEI 74 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC------CEEEEEeCCcHHHHHHHHHHhh--ccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4688887654 6889999998653 56777776643 2222222111 11345788999999988765532
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
....|.+|-.+.
T Consensus 75 ~~~~~~id~vi~~ag 89 (245)
T PRK12824 75 EEEEGPVDILVNNAG 89 (245)
T ss_pred HHHcCCCCEEEECCC
Confidence 234677777664
No 307
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=57.88 E-value=31 Score=33.79 Aligned_cols=99 Identities=20% Similarity=0.142 Sum_probs=51.5
Q ss_pred eEEEEe-ccchHHHHHHHHHHhcccCCCCeEEEEEcCC---hHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--C
Q 005788 384 HILILG-WSDKLGSLLKQLAVANKSIGGGVIVVLAERD---KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--S 457 (677)
Q Consensus 384 HIII~G-~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d---~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA--~ 457 (677)
.++|.| .|..+..+++.|.... ...++++.+. ..+.++.++++.. .+..|.++..|.++++.++++ .
T Consensus 2 tylitGG~gglg~~la~~La~~~-----~~~~il~~r~~~~~~~~~~~i~~l~~--~g~~v~~~~~Dv~d~~~v~~~~~~ 74 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERG-----ARRLILLGRSGAPSAEAEAAIRELES--AGARVEYVQCDVTDPEAVAAALAQ 74 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT------SEEEEEESSGGGSTTHHHHHHHHHH--TT-EEEEEE--TTSHHHHHHHHHT
T ss_pred EEEEECCccHHHHHHHHHHHHcC-----CCEEEEeccCCCccHHHHHHHHHHHh--CCCceeeeccCccCHHHHHHHHHH
Confidence 578887 5667889999998764 2345555444 1222333333321 256899999999999998875 2
Q ss_pred cc----cccEEEEecCCC-C--CccchHHHHHHHHHHhh
Q 005788 458 VS----KARAIIVLASDE-N--ADQSDARALRVVLSLTG 489 (677)
Q Consensus 458 I~----~A~aVIIltdd~-~--~~~sDa~NI~i~Lsar~ 489 (677)
+. .-+.||=.+... + -.+.|.+.+..++..|-
T Consensus 75 ~~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv 113 (181)
T PF08659_consen 75 LRQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKV 113 (181)
T ss_dssp SHTTSS-EEEEEE-------B-GCC--HHHHHHHHHHHH
T ss_pred HHhccCCcceeeeeeeeecccccccCCHHHHHHHHhhhh
Confidence 22 335566555431 1 11234445555555543
No 308
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=57.76 E-value=16 Score=39.32 Aligned_cols=40 Identities=23% Similarity=0.021 Sum_probs=33.6
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHH
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l 428 (677)
.+|.|+|.|..|..++..|...+ +.|.+.+++++..+.+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G------~~V~~~~r~~~~~~~i~ 44 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKG------VPVRLWARRPEFAAALA 44 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHH
Confidence 37999999999999999998764 78999999887766654
No 309
>PRK07791 short chain dehydrogenase; Provisional
Probab=57.57 E-value=38 Score=35.57 Aligned_cols=80 Identities=8% Similarity=0.052 Sum_probs=48.9
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCCh---------HHHHHHHHhhhcccCCccEEEEEeCCCCHH
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDK---------EEMEMDIAKLEFDFMGTSVICRSGSPLILA 451 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~---------e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e 451 (677)
...++|.|.+. .|..++++|...+ ..|++++.+. +..++..+++.. .+.++.++..|.++++
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G------~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dv~~~~ 77 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEG------ARVVVNDIGVGLDGSASGGSAAQAVVDEIVA--AGGEAVANGDDIADWD 77 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEeeCCccccccccchhHHHHHHHHHHh--cCCceEEEeCCCCCHH
Confidence 45678888776 5888999998764 5677776543 444444333211 1335677888998877
Q ss_pred HHhcc------CcccccEEEEecC
Q 005788 452 DLKKV------SVSKARAIIVLAS 469 (677)
Q Consensus 452 ~L~rA------~I~~A~aVIIltd 469 (677)
.++++ ...+-|.+|-.+.
T Consensus 78 ~v~~~~~~~~~~~g~id~lv~nAG 101 (286)
T PRK07791 78 GAANLVDAAVETFGGLDVLVNNAG 101 (286)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 75542 1234566666543
No 310
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=57.56 E-value=15 Score=39.49 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=49.0
Q ss_pred EEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCc----cEEEEEeCCCCHHHHhcc-Cc
Q 005788 385 ILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGT----SVICRSGSPLILADLKKV-SV 458 (677)
Q Consensus 385 III~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~----~V~~I~Gd~~~~e~L~rA-~I 458 (677)
|+|.|.+ ..|.+|++||...+. ..+++.|.|+..+-.+..++...+.+. .+.++.||..|.+.|.++ .-
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-----~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~ 75 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-----KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEE 75 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB------SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT-
T ss_pred CEEEccccHHHHHHHHHHHhcCC-----CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhh
Confidence 5677755 469999999997753 579999999887766555542111122 345679999999999886 33
Q ss_pred ccccEEEEecCC
Q 005788 459 SKARAIIVLASD 470 (677)
Q Consensus 459 ~~A~aVIIltdd 470 (677)
.+.|.|+=.+--
T Consensus 76 ~~pdiVfHaAA~ 87 (293)
T PF02719_consen 76 YKPDIVFHAAAL 87 (293)
T ss_dssp -T-SEEEE----
T ss_pred cCCCEEEEChhc
Confidence 467777766543
No 311
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=57.45 E-value=21 Score=40.12 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=48.9
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
...+++|+|.|..|..+++.|...+ ...|++++++.+..++..+++ +. .. ...+++.+ .+..
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G-----~~~V~v~~rs~~ra~~la~~~-----g~--~~-----i~~~~l~~-~l~~ 240 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKG-----VGKILIANRTYERAEDLAKEL-----GG--EA-----VKFEDLEE-YLAE 240 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCC-----CCEEEEEeCCHHHHHHHHHHc-----CC--eE-----eeHHHHHH-HHhh
Confidence 3578999999999999999987643 257888899887766554432 11 11 12234443 3468
Q ss_pred ccEEEEecCC
Q 005788 461 ARAIIVLASD 470 (677)
Q Consensus 461 A~aVIIltdd 470 (677)
||.||..++.
T Consensus 241 aDvVi~aT~s 250 (417)
T TIGR01035 241 ADIVISSTGA 250 (417)
T ss_pred CCEEEECCCC
Confidence 9999999865
No 312
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=57.25 E-value=95 Score=32.17 Aligned_cols=69 Identities=9% Similarity=0.118 Sum_probs=45.4
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~ 462 (677)
.+|.|+|.|..|..+++.|...+. ....|.+++++++..+.+.+.+ ++.+ ..+.+ ++ +++||
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~---~~~~v~v~~r~~~~~~~~~~~~-------g~~~----~~~~~---~~-~~~ad 64 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGV---PAKDIIVSDPSPEKRAALAEEY-------GVRA----ATDNQ---EA-AQEAD 64 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCC---CcceEEEEcCCHHHHHHHHHhc-------CCee----cCChH---HH-HhcCC
Confidence 468999999999999999986531 1246888999887766543321 1211 11222 22 35789
Q ss_pred EEEEecC
Q 005788 463 AIIVLAS 469 (677)
Q Consensus 463 aVIIltd 469 (677)
.||+.+.
T Consensus 65 vVil~v~ 71 (267)
T PRK11880 65 VVVLAVK 71 (267)
T ss_pred EEEEEcC
Confidence 9999885
No 313
>PRK06484 short chain dehydrogenase; Validated
Probab=57.19 E-value=32 Score=39.18 Aligned_cols=75 Identities=17% Similarity=0.123 Sum_probs=53.0
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~---- 457 (677)
+.++|.|.+. .|..++++|...+ ..|++++++.+.+++...+. +.++.++..|.++++.++++-
T Consensus 6 k~~lITGas~gIG~aia~~l~~~G------~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (520)
T PRK06484 6 RVVLVTGAAGGIGRAACQRFARAG------DQVVVADRNVERARERADSL-----GPDHHALAMDVSDEAQIREGFEQLH 74 (520)
T ss_pred eEEEEECCCcHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHh-----CCceeEEEeccCCHHHHHHHHHHHH
Confidence 4567778766 5889999998764 67888888888777655432 335677899999998876531
Q ss_pred --cccccEEEEec
Q 005788 458 --VSKARAIIVLA 468 (677)
Q Consensus 458 --I~~A~aVIIlt 468 (677)
..+-|.+|-.+
T Consensus 75 ~~~g~iD~li~na 87 (520)
T PRK06484 75 REFGRIDVLVNNA 87 (520)
T ss_pred HHhCCCCEEEECC
Confidence 12457777654
No 314
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=57.17 E-value=48 Score=34.99 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=45.9
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~ 462 (677)
.+|-|+|.|..|..+++.|...+ +.|++.|.+++..+...+. ++.+ ..+.+.+ +++||
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g------~~v~~~d~~~~~~~~~~~~--------g~~~----~~~~~e~----~~~~d 60 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAG------YSLVVYDRNPEAVAEVIAA--------GAET----ASTAKAV----AEQCD 60 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCC------CeEEEEcCCHHHHHHHHHC--------CCee----cCCHHHH----HhcCC
Confidence 36899999999999999998653 6788899998877654321 1111 1233333 35789
Q ss_pred EEEEecCC
Q 005788 463 AIIVLASD 470 (677)
Q Consensus 463 aVIIltdd 470 (677)
.||+..++
T Consensus 61 ~vi~~vp~ 68 (296)
T PRK11559 61 VIITMLPN 68 (296)
T ss_pred EEEEeCCC
Confidence 99999864
No 315
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=57.14 E-value=68 Score=33.48 Aligned_cols=82 Identities=23% Similarity=0.204 Sum_probs=51.6
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhh---cccCCccEEEEEeCCCCHHHHhccC
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE---FDFMGTSVICRSGSPLILADLKKVS 457 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~---~~~~~~~V~~I~Gd~~~~e~L~rA~ 457 (677)
...+|+|+|.|. ..+++++.+... ...|.++|-|++.++...+-+. ..+.+.++.++.+|+. .-|++..
T Consensus 76 ~p~~VLiiGgG~--G~~~~ell~~~~----~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~--~~l~~~~ 147 (246)
T PF01564_consen 76 NPKRVLIIGGGD--GGTARELLKHPP----VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGR--KFLKETQ 147 (246)
T ss_dssp ST-EEEEEESTT--SHHHHHHTTSTT-----SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHH--HHHHTSS
T ss_pred CcCceEEEcCCC--hhhhhhhhhcCC----cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhH--HHHHhcc
Confidence 578999999985 445677765431 2468899999987765433111 1123467888999854 4455554
Q ss_pred cccccEEEEecCC
Q 005788 458 VSKARAIIVLASD 470 (677)
Q Consensus 458 I~~A~aVIIltdd 470 (677)
-++.|.||+...+
T Consensus 148 ~~~yDvIi~D~~d 160 (246)
T PF01564_consen 148 EEKYDVIIVDLTD 160 (246)
T ss_dssp ST-EEEEEEESSS
T ss_pred CCcccEEEEeCCC
Confidence 4489999998765
No 316
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=57.02 E-value=44 Score=37.82 Aligned_cols=41 Identities=15% Similarity=0.089 Sum_probs=32.9
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHH
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD 427 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~ 427 (677)
..+.++|+|+|..|..++..+...+ ..|+++|.++.+.+.+
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~G------a~ViV~d~d~~R~~~A 241 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQG------ARVIVTEVDPICALQA 241 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC------CEEEEEECChhhHHHH
Confidence 4678999999999999998887653 4688899998776654
No 317
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=57.01 E-value=1.5e+02 Score=31.92 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=31.2
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChH
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE 422 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e 422 (677)
.+-+|+|+|.|-.|.++++.|..++- ..+.++|.|.-
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGV-----g~itI~D~d~v 54 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGV-----KSVTLHDTKPC 54 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCC-----CeEEEEcCCcc
Confidence 57899999999999999999998863 46888887753
No 318
>PRK03612 spermidine synthase; Provisional
Probab=56.91 E-value=98 Score=36.01 Aligned_cols=81 Identities=21% Similarity=0.187 Sum_probs=52.1
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc------ccCCccEEEEEeCCCCHHHHh
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF------DFMGTSVICRSGSPLILADLK 454 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~------~~~~~~V~~I~Gd~~~~e~L~ 454 (677)
...+|+++|.|. | .+++++.+.. ....|+++|.|++.++...+.... .+.+.++.++.||+.+ -++
T Consensus 297 ~~~rVL~IG~G~-G-~~~~~ll~~~----~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~--~l~ 368 (521)
T PRK03612 297 RPRRVLVLGGGD-G-LALREVLKYP----DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN--WLR 368 (521)
T ss_pred CCCeEEEEcCCc-c-HHHHHHHhCC----CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH--HHH
Confidence 456899999995 3 3556665432 124799999999877765441110 1223578899999754 344
Q ss_pred ccCcccccEEEEecCC
Q 005788 455 KVSVSKARAIIVLASD 470 (677)
Q Consensus 455 rA~I~~A~aVIIltdd 470 (677)
+. -++.|.||+...+
T Consensus 369 ~~-~~~fDvIi~D~~~ 383 (521)
T PRK03612 369 KL-AEKFDVIIVDLPD 383 (521)
T ss_pred hC-CCCCCEEEEeCCC
Confidence 33 3588999997654
No 319
>PRK12743 oxidoreductase; Provisional
Probab=56.76 E-value=46 Score=33.90 Aligned_cols=80 Identities=10% Similarity=0.013 Sum_probs=51.5
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLi-D~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
+.++|.|.+. .|..++++|...+ ..|+++ .++.+..+...++... .+.++.++.+|.++.+.++++-
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G------~~V~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQG------FDIGITWHSDEEGAKETAEEVRS--HGVRAEIRQLDLSDLPEGAQALDKL 74 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCChHHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHH
Confidence 4678888765 6889999998764 456555 4455554444332211 1346788999999988765531
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
....|.+|..+..
T Consensus 75 ~~~~~~id~li~~ag~ 90 (256)
T PRK12743 75 IQRLGRIDVLVNNAGA 90 (256)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1356888877653
No 320
>PRK08303 short chain dehydrogenase; Provisional
Probab=56.73 E-value=35 Score=36.48 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=49.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCCh----------HHHHHHHHhhhcccCCccEEEEEeCCCCH
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDK----------EEMEMDIAKLEFDFMGTSVICRSGSPLIL 450 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~----------e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~ 450 (677)
..+++|.|.+. .|..++++|...+ ..|++++++. +.+++..+.+.. .+..+.++..|.+++
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~G------~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dv~~~ 79 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAAG------ATVYVTGRSTRARRSEYDRPETIEETAELVTA--AGGRGIAVQVDHLVP 79 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEEecccccccccccccchHHHHHHHHHh--cCCceEEEEcCCCCH
Confidence 35788888875 6889999998764 5677777652 333332222211 133567889999999
Q ss_pred HHHhccC------cccccEEEEec
Q 005788 451 ADLKKVS------VSKARAIIVLA 468 (677)
Q Consensus 451 e~L~rA~------I~~A~aVIIlt 468 (677)
+..+++- ..+-|.+|..+
T Consensus 80 ~~v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 80 EQVRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHHHHcCCccEEEECC
Confidence 8876541 12456666554
No 321
>PRK06123 short chain dehydrogenase; Provisional
Probab=56.73 E-value=46 Score=33.43 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=48.3
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEc-CChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAE-RDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD-~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
.-++|.|.+. .|..++++|...+ ..|+++. ++++..++..+.+.. .+.++.++.+|.++.+.++++=-
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G------~~vv~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERG------YAVCLNYLRNRDAAEAVVQAIRR--QGGEALAVAADVADEADVLRLFEAV 74 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC------CeEEEecCCCHHHHHHHHHHHHh--CCCcEEEEEeccCCHHHHHHHHHHH
Confidence 4578888866 5888999998653 4566665 444444443332211 13356778899998887766411
Q ss_pred ----ccccEEEEecC
Q 005788 459 ----SKARAIIVLAS 469 (677)
Q Consensus 459 ----~~A~aVIIltd 469 (677)
...+.+|-.+.
T Consensus 75 ~~~~~~id~li~~ag 89 (248)
T PRK06123 75 DRELGRLDALVNNAG 89 (248)
T ss_pred HHHhCCCCEEEECCC
Confidence 24566666654
No 322
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=56.72 E-value=1.6e+02 Score=32.24 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=71.6
Q ss_pred EEEEecc--chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhh-cccCCccEEEEEeCCCCHHHHh-ccCc-c
Q 005788 385 ILILGWS--DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE-FDFMGTSVICRSGSPLILADLK-KVSV-S 459 (677)
Q Consensus 385 III~G~g--~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~-~~~~~~~V~~I~Gd~~~~e~L~-rA~I-~ 459 (677)
+|=+|+| .++..|++.|...+ ....++-+|-+.+.++...+++. .++....+..+.||..+.-.+. .... .
T Consensus 80 lIELGsG~~~Kt~~LL~aL~~~~----~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 80 LVELGSGNLRKVGILLEALERQK----KSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred EEEECCCchHHHHHHHHHHHhcC----CCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 3335555 46778889887432 23678889999999988888776 4555567777999988875533 2222 3
Q ss_pred cccEEEEecCC-CCCccchHHHHHHHHHHh--hhcCCCCceEEEEeCCCCCHHHHHH
Q 005788 460 KARAIIVLASD-ENADQSDARALRVVLSLT--GVKEGLRGHVVVEMSDLDNEPLVKL 513 (677)
Q Consensus 460 ~A~aVIIltdd-~~~~~sDa~NI~i~Lsar--~l~p~l~~~IIArv~d~e~~~~l~~ 513 (677)
..+.++-+.+. +|-+..++..+ +-.++ .++| +...+.-+.-....+.+..
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~f--L~~~~~~~l~~--~d~lLiG~D~~k~~~~l~~ 208 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAF--LAGFLATALSP--SDSFLIGLDGCKDPDKVLR 208 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHH--HHHHHHhhCCC--CCEEEEecCCCCCHHHHHH
Confidence 34566666544 44333333333 22333 3566 3456655544444444443
No 323
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=56.63 E-value=2.3e+02 Score=28.71 Aligned_cols=117 Identities=20% Similarity=0.246 Sum_probs=73.1
Q ss_pred eecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 005788 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (677)
Q Consensus 380 ~~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~ 459 (677)
...+|++=+|+|. ..+.-|+...++ ...|+-+|+|++.++..-++ ...|.-.++.++.|++ ++.|. ++.
T Consensus 33 ~~g~~l~DIGaGt--Gsi~iE~a~~~p----~~~v~AIe~~~~a~~~~~~N-~~~fg~~n~~vv~g~A--p~~L~--~~~ 101 (187)
T COG2242 33 RPGDRLWDIGAGT--GSITIEWALAGP----SGRVIAIERDEEALELIERN-AARFGVDNLEVVEGDA--PEALP--DLP 101 (187)
T ss_pred CCCCEEEEeCCCc--cHHHHHHHHhCC----CceEEEEecCHHHHHHHHHH-HHHhCCCcEEEEeccc--hHhhc--CCC
Confidence 3456777778774 233334433332 36799999999887765433 2334456889999994 56676 444
Q ss_pred cccEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCCHHH----HHHcCC
Q 005788 460 KARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPL----VKLVGG 516 (677)
Q Consensus 460 ~A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~~~~----l~~aGa 516 (677)
+.|++++=... ....-+..|+ ..+.+ ..++|+.+...|+... ++..|.
T Consensus 102 ~~daiFIGGg~-----~i~~ile~~~--~~l~~--ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 102 SPDAIFIGGGG-----NIEEILEAAW--ERLKP--GGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred CCCEEEECCCC-----CHHHHHHHHH--HHcCc--CCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 99999997752 1222233332 23444 4589999988887644 456776
No 324
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=56.60 E-value=1.5e+02 Score=29.88 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=30.4
Q ss_pred eecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCC
Q 005788 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (677)
Q Consensus 380 ~~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d 420 (677)
..+.||+|+|.|-.|..++..|...+. ..++++|.|
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gv-----g~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGI-----GKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEECCC
Confidence 357899999999999999999988752 368888888
No 325
>PLN02823 spermine synthase
Probab=56.49 E-value=38 Score=37.20 Aligned_cols=80 Identities=20% Similarity=0.222 Sum_probs=52.4
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc---ccCCccEEEEEeCCCCHHHHhccCc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF---DFMGTSVICRSGSPLILADLKKVSV 458 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~---~~~~~~V~~I~Gd~~~~e~L~rA~I 458 (677)
..+++|+|.|. ..+++++.... ....|+++|-|++.++...+.+.. .+.+.++.++.||+.+ -|++ .-
T Consensus 104 pk~VLiiGgG~--G~~~re~l~~~----~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~--~L~~-~~ 174 (336)
T PLN02823 104 PKTVFIMGGGE--GSTAREVLRHK----TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA--ELEK-RD 174 (336)
T ss_pred CCEEEEECCCc--hHHHHHHHhCC----CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH--HHhh-CC
Confidence 46899999994 34456666532 124699999999877755432211 1234688999999875 3443 34
Q ss_pred ccccEEEEecCC
Q 005788 459 SKARAIIVLASD 470 (677)
Q Consensus 459 ~~A~aVIIltdd 470 (677)
++.|.||+...+
T Consensus 175 ~~yDvIi~D~~d 186 (336)
T PLN02823 175 EKFDVIIGDLAD 186 (336)
T ss_pred CCccEEEecCCC
Confidence 678999987644
No 326
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=56.36 E-value=2.1e+02 Score=30.28 Aligned_cols=71 Identities=8% Similarity=0.094 Sum_probs=46.6
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
+.+|.|+|.|..|..+++.|.+.+. .....|++.+++++..+.+.+++ ++.. . .+.+.+ +++|
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~--~~~~~I~v~~r~~~~~~~l~~~~-------g~~~-~---~~~~e~----~~~a 64 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNI--VSPDQIICSDLNVSNLKNASDKY-------GITI-T---TNNNEV----ANSA 64 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCC--CCCceEEEECCCHHHHHHHHHhc-------CcEE-e---CCcHHH----HhhC
Confidence 3469999999999999999986531 01246888899888877654321 2211 1 122222 4578
Q ss_pred cEEEEecC
Q 005788 462 RAIIVLAS 469 (677)
Q Consensus 462 ~aVIIltd 469 (677)
|.||+...
T Consensus 65 DiIiLavk 72 (272)
T PRK12491 65 DILILSIK 72 (272)
T ss_pred CEEEEEeC
Confidence 98888885
No 327
>PRK08278 short chain dehydrogenase; Provisional
Probab=56.29 E-value=38 Score=35.16 Aligned_cols=80 Identities=15% Similarity=0.093 Sum_probs=50.8
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHH-------HHHHHHhhhcccCCccEEEEEeCCCCHHHHh
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEE-------MEMDIAKLEFDFMGTSVICRSGSPLILADLK 454 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~-------~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~ 454 (677)
+.++|.|.+. .|..++++|...+ ..|++++++.+. +++..++... .+.++.++.+|.++.+.++
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G------~~V~~~~r~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~D~~~~~~i~ 78 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDG------ANIVIAAKTAEPHPKLPGTIHTAAEEIEA--AGGQALPLVGDVRDEDQVA 78 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC------CEEEEEecccccccchhhHHHHHHHHHHh--cCCceEEEEecCCCHHHHH
Confidence 5788888766 5888999998654 567777765431 2222222111 1346788999999998876
Q ss_pred ccC--c----ccccEEEEecCC
Q 005788 455 KVS--V----SKARAIIVLASD 470 (677)
Q Consensus 455 rA~--I----~~A~aVIIltdd 470 (677)
++= + .+-|.+|-.+..
T Consensus 79 ~~~~~~~~~~g~id~li~~ag~ 100 (273)
T PRK08278 79 AAVAKAVERFGGIDICVNNASA 100 (273)
T ss_pred HHHHHHHHHhCCCCEEEECCCC
Confidence 531 1 256778776643
No 328
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=56.17 E-value=76 Score=34.32 Aligned_cols=75 Identities=27% Similarity=0.234 Sum_probs=47.6
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEe--CCCCHHHHhccCccc
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSG--SPLILADLKKVSVSK 460 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~G--d~~~~e~L~rA~I~~ 460 (677)
.+|.|+|.|-.|..+.-.|...+ ++|++.-+++. .+.+.++ +..+....| .......-.......
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g------~~V~~~~R~~~-~~~l~~~------GL~i~~~~~~~~~~~~~~~~~~~~~~ 67 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG------HDVTLLVRSRR-LEALKKK------GLRIEDEGGNFTTPVVAATDAEALGP 67 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC------CeEEEEecHHH-HHHHHhC------CeEEecCCCccccccccccChhhcCC
Confidence 36899999999999999998874 57888877764 4544321 223322222 111222223344558
Q ss_pred ccEEEEecCC
Q 005788 461 ARAIIVLASD 470 (677)
Q Consensus 461 A~aVIIltdd 470 (677)
+|.+|+.+..
T Consensus 68 ~Dlviv~vKa 77 (307)
T COG1893 68 ADLVIVTVKA 77 (307)
T ss_pred CCEEEEEecc
Confidence 9999999964
No 329
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=56.05 E-value=36 Score=36.52 Aligned_cols=80 Identities=18% Similarity=0.081 Sum_probs=51.2
Q ss_pred eEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChH-----HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC
Q 005788 384 HILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKE-----EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS 457 (677)
Q Consensus 384 HIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e-----~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~ 457 (677)
.++|.|.+ -.|..++++|...+ +.|+++++.++ .++...++.. +..+.++.++.||..+.+.+.++-
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G------~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~l~~~~ 74 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG------YEVHGLIRRSSSFNTQRIEHIYEDPH-NVNKARMKLHYGDLTDSSNLRRII 74 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC------CEEEEEecCCcccchhhhhhhhhccc-cccccceeEEEeccCCHHHHHHHH
Confidence 68899874 57999999998764 56777776542 2222111000 001235788999999998887643
Q ss_pred cc-cccEEEEecCC
Q 005788 458 VS-KARAIIVLASD 470 (677)
Q Consensus 458 I~-~A~aVIIltdd 470 (677)
-. +.|.||=++..
T Consensus 75 ~~~~~d~ViH~Aa~ 88 (343)
T TIGR01472 75 DEIKPTEIYNLAAQ 88 (343)
T ss_pred HhCCCCEEEECCcc
Confidence 22 46888877754
No 330
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=56.03 E-value=45 Score=33.94 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=48.7
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
...++|.|.+. .|..++++|...+ ..|+++++++. .++..+++.. .+.++.++.+|.++.+.++++-
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G------~~v~~~~r~~~-~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 78 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEG------ARVVLVDRSEL-VHEVAAELRA--AGGEALALTADLETYAGAQAAMAAA 78 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCchH-HHHHHHHHHh--cCCeEEEEEEeCCCHHHHHHHHHHH
Confidence 35688888865 5889999998764 57888887743 2222222211 1345778889998877655431
Q ss_pred ---cccccEEEEec
Q 005788 458 ---VSKARAIIVLA 468 (677)
Q Consensus 458 ---I~~A~aVIIlt 468 (677)
...-|.+|-.+
T Consensus 79 ~~~~~~id~lv~nA 92 (260)
T PRK12823 79 VEAFGRIDVLINNV 92 (260)
T ss_pred HHHcCCCeEEEECC
Confidence 12456666655
No 331
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.00 E-value=42 Score=35.62 Aligned_cols=81 Identities=11% Similarity=0.046 Sum_probs=52.2
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCC-hHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD-KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d-~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-- 457 (677)
...+||.|.+. .|..++++|.+.+ ..|++.+.. .+..++..+++.. .+.++.++.+|..+.+.++++-
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~G------a~Vv~~~~~~~~~~~~~~~~i~~--~g~~~~~~~~Dv~d~~~~~~~~~~ 83 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARLG------ATVVVNDVASALDASDVLDEIRA--AGAKAVAVAGDISQRATADELVAT 83 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CEEEEecCCchhHHHHHHHHHHh--cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 45677888765 5889999998764 567777653 3334433332211 1346788999999988876631
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
..+.|.+|-.+..
T Consensus 84 ~~~~g~iD~li~nAG~ 99 (306)
T PRK07792 84 AVGLGGLDIVVNNAGI 99 (306)
T ss_pred HHHhCCCCEEEECCCC
Confidence 2356888776643
No 332
>PRK06841 short chain dehydrogenase; Provisional
Probab=55.98 E-value=46 Score=33.66 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=51.5
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
..+++|.|.+ ..|..++++|...+ ..|++++++++. .+...+. .+.++.++..|..+++.++++-
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G------~~Vi~~~r~~~~-~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~ 83 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKG------ARVALLDRSEDV-AEVAAQL----LGGNAKGLVCDVSDSQSVEAAVAAV 83 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCHHH-HHHHHHh----hCCceEEEEecCCCHHHHHHHHHHH
Confidence 4578888874 46889999998653 578888887653 2222221 1235668899999998876642
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
..+.|.+|-.+..
T Consensus 84 ~~~~~~~d~vi~~ag~ 99 (255)
T PRK06841 84 ISAFGRIDILVNSAGV 99 (255)
T ss_pred HHHhCCCCEEEECCCC
Confidence 1246777776653
No 333
>PRK07856 short chain dehydrogenase; Provisional
Probab=55.49 E-value=32 Score=35.00 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=49.7
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--I 458 (677)
...++|.|.+. .|..++++|...+ ..|++++++++. .. .+.++.++.+|..+++.++++- +
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g------~~v~~~~r~~~~--~~--------~~~~~~~~~~D~~~~~~~~~~~~~~ 69 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAG------ATVVVCGRRAPE--TV--------DGRPAEFHAADVRDPDQVAALVDAI 69 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEEeCChhh--hh--------cCCceEEEEccCCCHHHHHHHHHHH
Confidence 45678888765 6889999998754 578888887654 10 1346778899999988876531 1
Q ss_pred ----ccccEEEEecC
Q 005788 459 ----SKARAIIVLAS 469 (677)
Q Consensus 459 ----~~A~aVIIltd 469 (677)
.+.|.+|-.+.
T Consensus 70 ~~~~~~id~vi~~ag 84 (252)
T PRK07856 70 VERHGRLDVLVNNAG 84 (252)
T ss_pred HHHcCCCCEEEECCC
Confidence 24577777654
No 334
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=55.44 E-value=29 Score=34.22 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=30.9
Q ss_pred ecCeEEEEeccch-HHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHH
Q 005788 381 EKNHILILGWSDK-LGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (677)
Q Consensus 381 ~knHIII~G~g~~-g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~ 429 (677)
...+++|+|.|+. +..+++.|...+ ..|+++++..+++.+.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g------~~V~v~~r~~~~l~~~l~ 86 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRN------ATVTVCHSKTKNLKEHTK 86 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCC------CEEEEEECCchhHHHHHh
Confidence 5689999999996 666888887643 468888877655554443
No 335
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=55.42 E-value=25 Score=37.61 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=42.9
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh--HHHHHHHHhhhcccCCccEEEEEeCCCCH--HHHhccC
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK--EEMEMDIAKLEFDFMGTSVICRSGSPLIL--ADLKKVS 457 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~--e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~--e~L~rA~ 457 (677)
...|+|+|.|..|..+++.|...+ ..+.+++.|. +.++.... .++ .++ .+.....
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g------~~v~i~g~d~~~~~~~~a~~--------lgv-------~d~~~~~~~~~~ 61 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAG------LVVRIIGRDRSAATLKAALE--------LGV-------IDELTVAGLAEA 61 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcC------CeEEEEeecCcHHHHHHHhh--------cCc-------ccccccchhhhh
Confidence 578999999999999999999875 4555555544 33333211 122 111 2333455
Q ss_pred cccccEEEEecC
Q 005788 458 VSKARAIIVLAS 469 (677)
Q Consensus 458 I~~A~aVIIltd 469 (677)
+..||.||+..+
T Consensus 62 ~~~aD~VivavP 73 (279)
T COG0287 62 AAEADLVIVAVP 73 (279)
T ss_pred cccCCEEEEecc
Confidence 667888888886
No 336
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=55.23 E-value=94 Score=32.25 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=30.3
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
.+-||+|+|.|..|..+++.|...+- ..++|+|.|.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GV-----g~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGV-----GKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCE
Confidence 46799999999999999999998753 4688888775
No 337
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=55.14 E-value=13 Score=41.48 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=25.5
Q ss_pred HHHHHHhhhhhccC-CCHHHHHHHHHHhhhccCCCCc
Q 005788 298 LIIFGGLALYAVSD-SSFAEALWLSWTFVADSGNHAD 333 (677)
Q Consensus 298 lil~g~l~~~~iE~-~s~~dAlw~t~vTiTTvGyg~~ 333 (677)
+.+++.+.|+ ..+ .+++||++.++.+++|.|+...
T Consensus 113 lt~l~~~~~~-~~g~~~~~~Aif~avSa~~taGFs~~ 148 (390)
T TIGR00933 113 GTILLAVRFV-LTGWMPLFDAIFHSISAFNNGGFSTH 148 (390)
T ss_pred HHHHHHHHHH-HhcchHHHHHHHHHHHHHhcCCcCCC
Confidence 3334444443 445 8999999999999999999643
No 338
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=55.13 E-value=1.1e+02 Score=32.62 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=46.4
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~a 463 (677)
+|-|+|.|..|..+++.|...+ +.|++.|++++..+...+ .++.. ..+.+++.+. .+++|.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g------~~v~v~dr~~~~~~~~~~--------~g~~~----~~~~~e~~~~-~~~~dv 62 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGG------HEVVGYDRNPEAVEALAE--------EGATG----ADSLEELVAK-LPAPRV 62 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCC------CeEEEEECCHHHHHHHHH--------CCCee----cCCHHHHHhh-cCCCCE
Confidence 5889999999999999998764 678899999988776533 12211 2234443221 235788
Q ss_pred EEEecCC
Q 005788 464 IIVLASD 470 (677)
Q Consensus 464 VIIltdd 470 (677)
||+..++
T Consensus 63 vi~~v~~ 69 (301)
T PRK09599 63 VWLMVPA 69 (301)
T ss_pred EEEEecC
Confidence 8888864
No 339
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=55.03 E-value=25 Score=33.47 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=40.4
Q ss_pred EEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccEE
Q 005788 385 ILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAI 464 (677)
Q Consensus 385 III~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~aV 464 (677)
.+|+|.|..+..+++-....+ ..|+++|.+++.+.. ..+ +...+ ..+..+...+....+|
T Consensus 1 L~I~GaG~va~al~~la~~lg------~~v~v~d~r~e~~~~----------~~~--~~~~~--~~~~~~~~~~~~~t~V 60 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLG------FRVTVVDPRPERFPE----------ADE--VICIP--PDDILEDLEIDPNTAV 60 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCT------EEEEEEES-CCC-TT----------SSE--EECSH--HHHHHHHC-S-TT-EE
T ss_pred CEEEeCcHHHHHHHHHHHhCC------CEEEEEcCCccccCC----------CCc--cEecC--hHHHHhccCCCCCeEE
Confidence 489999999999988777654 789999988764321 112 22222 2334456677777777
Q ss_pred EEecCCCCCccchHHHHHH
Q 005788 465 IVLASDENADQSDARALRV 483 (677)
Q Consensus 465 IIltdd~~~~~sDa~NI~i 483 (677)
+++.+. +-|...+..
T Consensus 61 -v~th~h---~~D~~~L~~ 75 (136)
T PF13478_consen 61 -VMTHDH---ELDAEALEA 75 (136)
T ss_dssp -E--S-C---CCHHHHHHH
T ss_pred -EEcCCc---hhHHHHHHH
Confidence 466542 346555433
No 340
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.98 E-value=34 Score=35.14 Aligned_cols=76 Identities=14% Similarity=0.032 Sum_probs=47.6
Q ss_pred cCeEEEEec---cchHHHHHHHHHHhcccCCCCeEEEEEcCCh--HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 005788 382 KNHILILGW---SDKLGSLLKQLAVANKSIGGGVIVVLAERDK--EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (677)
Q Consensus 382 knHIII~G~---g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~--e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA 456 (677)
...++|.|. +..|..++++|...+ ..|++.+++. +..+++.++. +..+.++..|.++++..+++
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G------~~v~l~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~i~~~ 75 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQG------AEVVLTGFGRALRLTERIAKRL-----PEPAPVLELDVTNEEHLASL 75 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCC------CEEEEecCccchhHHHHHHHhc-----CCCCcEEeCCCCCHHHHHHH
Confidence 357888897 457889999998764 5688877543 3344433221 12456778888888776543
Q ss_pred C------cccccEEEEec
Q 005788 457 S------VSKARAIIVLA 468 (677)
Q Consensus 457 ~------I~~A~aVIIlt 468 (677)
- ..+-|.+|-.+
T Consensus 76 ~~~~~~~~g~iD~li~nA 93 (256)
T PRK07889 76 ADRVREHVDGLDGVVHSI 93 (256)
T ss_pred HHHHHHHcCCCcEEEEcc
Confidence 1 23456666544
No 341
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=54.96 E-value=54 Score=35.57 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=26.0
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
||+|+|.|..|..+++.|...+- ..++++|.|.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-----g~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-----RHITFVDSGK 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCE
Confidence 68999999999999999988753 3566666553
No 342
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=54.65 E-value=51 Score=33.14 Aligned_cols=80 Identities=14% Similarity=0.035 Sum_probs=49.6
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEE-EcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVL-AERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVL-iD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
+.++|.|.+. .|..++++|.+.+ ..|++ ...+.+..++.+++... .+.++.++.+|..+.+.++++-
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G------~~vv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDG------FKVVAGCGPNSPRRVKWLEDQKA--LGFDFIASEGNVGDWDSTKAAFDKV 75 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcC------CEEEEEcCCChHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4568888754 6889999998764 44555 44444444433333211 1346778899999998877642
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
..+.|.+|-.+..
T Consensus 76 ~~~~~~id~li~~ag~ 91 (246)
T PRK12938 76 KAEVGEIDVLVNNAGI 91 (246)
T ss_pred HHHhCCCCEEEECCCC
Confidence 1245777776643
No 343
>PRK06223 malate dehydrogenase; Reviewed
Probab=54.56 E-value=1.1e+02 Score=32.46 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=44.7
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcc--cCCccEEEEEeCCCCHHHHhccCccc
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFD--FMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~--~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
.+|.|+|.|..|..++..+...+ .. .|+++|.+++..+....++... ...... -+++. .+.+ .+.+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~----~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~-~i~~~-~d~~-----~~~~ 70 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKE----LG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDT-KITGT-NDYE-----DIAG 70 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC----Ce-EEEEEECCCchhHHHHHHHHhhhhhcCCCc-EEEeC-CCHH-----HHCC
Confidence 58999999999999988887542 12 7999998876544322221110 111111 12221 2222 2568
Q ss_pred ccEEEEecCC
Q 005788 461 ARAIIVLASD 470 (677)
Q Consensus 461 A~aVIIltdd 470 (677)
||.||+....
T Consensus 71 aDiVii~~~~ 80 (307)
T PRK06223 71 SDVVVITAGV 80 (307)
T ss_pred CCEEEECCCC
Confidence 9999987643
No 344
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=54.55 E-value=1.1e+02 Score=32.02 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=47.2
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..+++|+|.|..+..++..|...+ ..|.+.++++++.++..+++.. .+ .+.+. + .+ .....++
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g------~~v~v~~R~~~~~~~la~~~~~--~~-~~~~~--~---~~---~~~~~~~ 179 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKAD------CNVIIANRTVSKAEELAERFQR--YG-EIQAF--S---MD---ELPLHRV 179 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHHhh--cC-ceEEe--c---hh---hhcccCc
Confidence 457999999999999999998653 5788889988777765543311 01 11111 1 11 1234578
Q ss_pred cEEEEecCC
Q 005788 462 RAIIVLASD 470 (677)
Q Consensus 462 ~aVIIltdd 470 (677)
|.||-.++.
T Consensus 180 DivInatp~ 188 (270)
T TIGR00507 180 DLIINATSA 188 (270)
T ss_pred cEEEECCCC
Confidence 999988875
No 345
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=54.55 E-value=47 Score=33.09 Aligned_cols=78 Identities=14% Similarity=0.074 Sum_probs=49.4
Q ss_pred eEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcC-ChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 005788 384 HILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAER-DKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (677)
Q Consensus 384 HIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~-d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~---- 457 (677)
-++|.|.+ ..|..++++|...+ ..|+++.+ +++..++...+... .+.++.++.+|.++++.++++-
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 73 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDG------YRVAANCGPNEERAEAWLQEQGA--LGFDFRVVEGDVSSFESCKAAVAKVE 73 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCCHHHHHHHHHHHHh--hCCceEEEEecCCCHHHHHHHHHHHH
Confidence 36777764 46889999998654 45665554 55555544333211 1346788999999988876531
Q ss_pred --cccccEEEEecC
Q 005788 458 --VSKARAIIVLAS 469 (677)
Q Consensus 458 --I~~A~aVIIltd 469 (677)
....|.||-.+.
T Consensus 74 ~~~~~id~vi~~ag 87 (242)
T TIGR01829 74 AELGPIDVLVNNAG 87 (242)
T ss_pred HHcCCCcEEEECCC
Confidence 234677777764
No 346
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=54.47 E-value=41 Score=38.97 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=23.6
Q ss_pred hhhhhccCCCHHHHHHHHHHhhhccCCC
Q 005788 304 LALYAVSDSSFAEALWLSWTFVADSGNH 331 (677)
Q Consensus 304 l~~~~iE~~s~~dAlw~t~vTiTTvGyg 331 (677)
..+++..+++++||++.++.+++|-||-
T Consensus 189 ~~~~~~~gm~~~dAi~hs~Sa~~ngGFS 216 (499)
T COG0168 189 ALAFILAGMPLFDAIFHSMSAFNNGGFS 216 (499)
T ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCCC
Confidence 3344567889999999999999999994
No 347
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.34 E-value=47 Score=34.11 Aligned_cols=62 Identities=10% Similarity=0.016 Sum_probs=39.2
Q ss_pred cCeEEEEecc---chHHHHHHHHHHhcccCCCCeEEEEEcCChHH---HHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 005788 382 KNHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAERDKEE---MEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (677)
Q Consensus 382 knHIII~G~g---~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~---~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~r 455 (677)
...++|.|.+ ..|..++++|.+.+ ..|++++++.+. +++..++. ..+.++..|.++.+..++
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G------~~v~l~~r~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~v~~ 77 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALG------AELAVTYLNDKARPYVEPLAEEL------DAPIFLPLDVREPGQLEA 77 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcC------CEEEEEeCChhhHHHHHHHHHhh------ccceEEecCcCCHHHHHH
Confidence 3567888976 47899999998764 567777776432 22222211 123466778777776654
No 348
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=54.29 E-value=46 Score=37.48 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=34.2
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHH
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD 427 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~ 427 (677)
.+|-|+|.|..|..++..|...+ +.|+.+|.+++.++.+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G------~~V~~~D~~~~~v~~l 42 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ------KQVIGVDINQHAVDTI 42 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC------CEEEEEeCCHHHHHHH
Confidence 57999999999999999998764 7899999999888764
No 349
>PLN00203 glutamyl-tRNA reductase
Probab=54.21 E-value=38 Score=39.40 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=50.1
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..+++|+|.|..|..+++.|...+ -..|++++++.+..+.+.+++. +..+.+ ...+++.+ .+.+|
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G-----~~~V~V~nRs~era~~La~~~~----g~~i~~-----~~~~dl~~-al~~a 330 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKG-----CTKMVVVNRSEERVAALREEFP----DVEIIY-----KPLDEMLA-CAAEA 330 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHhC----CCceEe-----ecHhhHHH-HHhcC
Confidence 467999999999999999998643 2468888999888777654321 111211 12233433 35789
Q ss_pred cEEEEecCC
Q 005788 462 RAIIVLASD 470 (677)
Q Consensus 462 ~aVIIltdd 470 (677)
|.||..|..
T Consensus 331 DVVIsAT~s 339 (519)
T PLN00203 331 DVVFTSTSS 339 (519)
T ss_pred CEEEEccCC
Confidence 999998865
No 350
>PRK06114 short chain dehydrogenase; Provisional
Probab=54.02 E-value=49 Score=33.67 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=48.4
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc-
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV- 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~-e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I- 458 (677)
...++|.|.+. .|..++++|...+ ..|++++++. +..++..+++.. .+.++.++.+|..+++.++++--
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G------~~v~~~~r~~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~i~~~~~~ 79 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAG------ADVALFDLRTDDGLAETAEHIEA--AGRRAIQIAADVTSKADLRAAVAR 79 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEEeCCcchHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHH
Confidence 35677778665 5889999998764 5677777653 233443332211 12356778889888887765311
Q ss_pred -----ccccEEEEecC
Q 005788 459 -----SKARAIIVLAS 469 (677)
Q Consensus 459 -----~~A~aVIIltd 469 (677)
.+-|.+|-.+.
T Consensus 80 ~~~~~g~id~li~~ag 95 (254)
T PRK06114 80 TEAELGALTLAVNAAG 95 (254)
T ss_pred HHHHcCCCCEEEECCC
Confidence 12366665554
No 351
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=53.86 E-value=55 Score=33.43 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=48.6
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcC-ChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAER-DKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~-d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-- 457 (677)
..+++|.|.+. .|..++++|.+.+ ..|++..+ +.+..+...+++.. .+.++.++..|.++.+.++++-
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G------~~vvi~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~i~~~~~~ 78 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEK------AKVVINYRSDEEEANDVAEEIKK--AGGEAIAVKGDVTVESDVVNLIQT 78 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC------CEEEEEeCCCHHHHHHHHHHHHH--cCCeEEEEEecCCCHHHHHHHHHH
Confidence 45788888766 5889999998764 45555544 44444433332211 1345778889999888765531
Q ss_pred ----cccccEEEEecC
Q 005788 458 ----VSKARAIIVLAS 469 (677)
Q Consensus 458 ----I~~A~aVIIltd 469 (677)
....|.+|-.+.
T Consensus 79 ~~~~~g~id~lv~~ag 94 (261)
T PRK08936 79 AVKEFGTLDVMINNAG 94 (261)
T ss_pred HHHHcCCCCEEEECCC
Confidence 124567766654
No 352
>PRK08324 short chain dehydrogenase; Validated
Probab=53.78 E-value=42 Score=40.16 Aligned_cols=80 Identities=20% Similarity=0.096 Sum_probs=56.5
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.+.++|.|. |..|..++++|...+ ..|++++++.+..+...+.+.. ..++.++.+|.++++.++++-
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~G------a~Vvl~~r~~~~~~~~~~~l~~---~~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEG------ACVVLADLDEEAAEAAAAELGG---PDRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCc------CEEEEEeCCHHHHHHHHHHHhc---cCcEEEEEecCCCHHHHHHHHHHH
Confidence 367888895 667999999998653 5788999988776665443211 136788999999998876532
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
....|.+|-.+..
T Consensus 493 ~~~~g~iDvvI~~AG~ 508 (681)
T PRK08324 493 ALAFGGVDIVVSNAGI 508 (681)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1256888877753
No 353
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=53.75 E-value=31 Score=38.27 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=30.7
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHH
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEE 423 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~ 423 (677)
.-..+||||||..|.-++..++.. |..|++.|-||-.
T Consensus 208 aGK~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvDPI~ 244 (420)
T COG0499 208 AGKNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVDPIR 244 (420)
T ss_pred cCceEEEecccccchHHHHHhhcC------CCeEEEEecCchH
Confidence 356789999999999999998765 4789999998854
No 354
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=53.72 E-value=42 Score=35.10 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=50.7
Q ss_pred eecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEE-EEEeCCCCHHHHhccCc
Q 005788 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVI-CRSGSPLILADLKKVSV 458 (677)
Q Consensus 380 ~~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~-~I~Gd~~~~e~L~rA~I 458 (677)
..+.|++|+|.|..+..+++.....+ ..|+++|..++.... ..+ .++. ++..++ .+.+.. +
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~lG------f~V~v~D~R~~~~~~------~~~--~~~~~~~~~~~--~~~~~~--~ 159 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAPLP------CRVTWVDSREAEFPE------DLP--DGVATLVTDEP--EAEVAE--A 159 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhcCC------CEEEEEeCCcccccc------cCC--CCceEEecCCH--HHHHhc--C
Confidence 45789999999999999988877654 789999877652211 011 1222 232332 333333 4
Q ss_pred ccccEEEEecCCCCCccchHHHHHHHH
Q 005788 459 SKARAIIVLASDENADQSDARALRVVL 485 (677)
Q Consensus 459 ~~A~aVIIltdd~~~~~sDa~NI~i~L 485 (677)
..-+++++++.+. .-|...+..++
T Consensus 160 ~~~t~vvi~th~h---~~D~~~L~~aL 183 (246)
T TIGR02964 160 PPGSYFLVLTHDH---ALDLELCHAAL 183 (246)
T ss_pred CCCcEEEEEeCCh---HHHHHHHHHHH
Confidence 4567888888652 23555444333
No 355
>PRK08507 prephenate dehydrogenase; Validated
Probab=53.58 E-value=74 Score=33.36 Aligned_cols=40 Identities=20% Similarity=0.035 Sum_probs=31.8
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHH
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMD 427 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~ 427 (677)
+|.|+|.|..|..++..|...+. ...|++.|.+++.++..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~----~~~v~~~d~~~~~~~~~ 41 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGL----ISKVYGYDHNELHLKKA 41 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCC----CCEEEEEcCCHHHHHHH
Confidence 58899999999999999986531 23677889988877664
No 356
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=53.40 E-value=67 Score=35.25 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=51.3
Q ss_pred eecCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 005788 380 IEKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (677)
Q Consensus 380 ~~knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I 458 (677)
..+.+|+|.|. |-.|..++++|...+ +.|+.+++..... .... ...+.++.||..+.+.+.++ +
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G------~~V~~v~r~~~~~---~~~~-----~~~~~~~~~Dl~d~~~~~~~-~ 83 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEG------HYIIASDWKKNEH---MSED-----MFCHEFHLVDLRVMENCLKV-T 83 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCC------CEEEEEEeccccc---cccc-----cccceEEECCCCCHHHHHHH-H
Confidence 35678999998 667999999998754 6788777643211 0000 11245678999998887765 3
Q ss_pred ccccEEEEecC
Q 005788 459 SKARAIIVLAS 469 (677)
Q Consensus 459 ~~A~aVIIltd 469 (677)
.++|.||=++.
T Consensus 84 ~~~D~Vih~Aa 94 (370)
T PLN02695 84 KGVDHVFNLAA 94 (370)
T ss_pred hCCCEEEEccc
Confidence 46898888874
No 357
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=53.38 E-value=59 Score=34.84 Aligned_cols=78 Identities=22% Similarity=0.204 Sum_probs=52.0
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccC----CccEEEEEeCCCCHHHHhccCc
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFM----GTSVICRSGSPLILADLKKVSV 458 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~----~~~V~~I~Gd~~~~e~L~rA~I 458 (677)
.||+|+|.|. ...++++.+.+. -..++++|-|++.++-..+-+ .... ..++..+.+|+. +-+++..-
T Consensus 78 k~VLiiGgGd--G~tlRevlkh~~----ve~i~~VEID~~Vi~~ar~~l-~~~~~~~~dpRv~i~i~Dg~--~~v~~~~~ 148 (282)
T COG0421 78 KRVLIIGGGD--GGTLREVLKHLP----VERITMVEIDPAVIELARKYL-PEPSGGADDPRVEIIIDDGV--EFLRDCEE 148 (282)
T ss_pred CeEEEECCCc--cHHHHHHHhcCC----cceEEEEEcCHHHHHHHHHhc-cCcccccCCCceEEEeccHH--HHHHhCCC
Confidence 4999999996 334566655432 257999999998776554422 1111 467888888864 34554443
Q ss_pred ccccEEEEecCC
Q 005788 459 SKARAIIVLASD 470 (677)
Q Consensus 459 ~~A~aVIIltdd 470 (677)
+.|.||+.+.+
T Consensus 149 -~fDvIi~D~td 159 (282)
T COG0421 149 -KFDVIIVDSTD 159 (282)
T ss_pred -cCCEEEEcCCC
Confidence 89999998876
No 358
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=53.32 E-value=43 Score=35.72 Aligned_cols=65 Identities=11% Similarity=0.138 Sum_probs=45.3
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~a 463 (677)
+|-|+|.|..|..++..|...+ +.|++.|++++..+.+.+. ++. ...+...+ ++.||.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G------~~V~v~d~~~~~~~~~~~~--------g~~----~~~s~~~~----~~~aDv 60 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQG------HQLQVFDVNPQAVDALVDK--------GAT----PAASPAQA----AAGAEF 60 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCC------CeEEEEcCCHHHHHHHHHc--------CCc----ccCCHHHH----HhcCCE
Confidence 6889999999999999998654 6789999999887765431 111 11222222 457788
Q ss_pred EEEecCC
Q 005788 464 IIVLASD 470 (677)
Q Consensus 464 VIIltdd 470 (677)
||+..++
T Consensus 61 Vi~~vp~ 67 (296)
T PRK15461 61 VITMLPN 67 (296)
T ss_pred EEEecCC
Confidence 8888863
No 359
>PLN02240 UDP-glucose 4-epimerase
Probab=53.28 E-value=40 Score=36.10 Aligned_cols=80 Identities=21% Similarity=0.145 Sum_probs=50.2
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCCh----HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 005788 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDK----EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (677)
Q Consensus 382 knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~----e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA 456 (677)
...|+|.|. |-.|..++++|...+ +.|+++++.. +..+.... ... ....++.++.||..+.+.++++
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g------~~V~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~D~~~~~~l~~~ 76 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAG------YKVVVIDNLDNSSEEALRRVKE-LAG-DLGDNLVFHKVDLRDKEALEKV 76 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CEEEEEeCCCcchHHHHHHHHH-hhc-ccCccceEEecCcCCHHHHHHH
Confidence 357999987 557889999998754 5677776421 11111111 000 0123577899999999988765
Q ss_pred Cc-ccccEEEEecC
Q 005788 457 SV-SKARAIIVLAS 469 (677)
Q Consensus 457 ~I-~~A~aVIIltd 469 (677)
-- ..++.||-++.
T Consensus 77 ~~~~~~d~vih~a~ 90 (352)
T PLN02240 77 FASTRFDAVIHFAG 90 (352)
T ss_pred HHhCCCCEEEEccc
Confidence 21 25788888764
No 360
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.27 E-value=55 Score=32.51 Aligned_cols=79 Identities=19% Similarity=0.142 Sum_probs=50.0
Q ss_pred CeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEE-EcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c
Q 005788 383 NHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVL-AERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V 458 (677)
Q Consensus 383 nHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVL-iD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--I 458 (677)
..++|.|.+ ..|..++++|...+ +.|++ +..+.+..+....... ..+.++.++.+|..+.+.++++- +
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g------~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~ 78 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAG------ADVVVHYRSDEEAAEELVEAVE--ALGRRAQAVQADVTDKAALEAAVAAA 78 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC------CeEEEEeCCCHHHHHHHHHHHH--hcCCceEEEECCcCCHHHHHHHHHHH
Confidence 468888865 46889999998754 34444 5555544443332221 11346788999999999876641 1
Q ss_pred ----ccccEEEEecC
Q 005788 459 ----SKARAIIVLAS 469 (677)
Q Consensus 459 ----~~A~aVIIltd 469 (677)
...+.+|-++.
T Consensus 79 ~~~~~~id~vi~~ag 93 (249)
T PRK12825 79 VERFGRIDILVNNAG 93 (249)
T ss_pred HHHcCCCCEEEECCc
Confidence 35688887665
No 361
>PRK09134 short chain dehydrogenase; Provisional
Probab=53.24 E-value=57 Score=33.24 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=50.5
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLi-D~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-- 457 (677)
...++|.|.+. .|..++++|.+.+ ..|+++ .++.+..+...++... .+.++.++.+|.++.+.++++-
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g------~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~ 80 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHG------FDVAVHYNRSRDEAEALAAEIRA--LGRRAVALQADLADEAEVRALVAR 80 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC------CEEEEEeCCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHH
Confidence 45788888876 5888999998654 455554 4444444443332211 1346778999999988876641
Q ss_pred ----cccccEEEEecC
Q 005788 458 ----VSKARAIIVLAS 469 (677)
Q Consensus 458 ----I~~A~aVIIltd 469 (677)
...-|.+|-.+.
T Consensus 81 ~~~~~~~iD~vi~~ag 96 (258)
T PRK09134 81 ASAALGPITLLVNNAS 96 (258)
T ss_pred HHHHcCCCCEEEECCc
Confidence 124577877764
No 362
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=53.04 E-value=1.3e+02 Score=30.13 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=29.9
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
.+-||+|+|.|..|.++++.|...+- ..+.++|.|.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GV-----g~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGI-----GSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCC-----CEEEEEECCc
Confidence 57899999999999999999998763 4577777764
No 363
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.01 E-value=43 Score=34.83 Aligned_cols=65 Identities=9% Similarity=0.066 Sum_probs=39.4
Q ss_pred cCeEEEEecc---chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 005788 382 KNHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (677)
Q Consensus 382 knHIII~G~g---~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~r 455 (677)
...++|.|.+ ..|..++++|.+++ ..|++.+++. ..++..+++... ...+.++..|.++++.+++
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G------~~vil~~r~~-~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~ 73 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREG------AELAFTYQND-KLKGRVEEFAAQ--LGSDIVLPCDVAEDASIDA 73 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCC------CEEEEEecch-hHHHHHHHHHhc--cCCceEeecCCCCHHHHHH
Confidence 3568889986 37889999998764 5677777663 222222222111 1124456777777776664
No 364
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=52.90 E-value=32 Score=40.23 Aligned_cols=59 Identities=24% Similarity=0.134 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhhhhccC--------C--------C------HHHHHHHHHHhhhccC-CCC--ccCCCCCeEEeeee
Q 005788 292 LFATIFLIIFGGLALYAVSD--------S--------S------FAEALWLSWTFVADSG-NHA--DRVGTGPRIVSVSI 346 (677)
Q Consensus 292 l~~~l~lil~g~l~~~~iE~--------~--------s------~~dAlw~t~vTiTTvG-yg~--~p~t~~gRi~~v~l 346 (677)
+.+.++++++|++++++.|- . . +..|+|.+++|-||.| +.. +..+..+.++.+++
T Consensus 285 l~~~~iL~i~g~~~~~~~E~~~np~l~~l~~~gn~egKE~RfG~~~salF~svTtrtTaG~fNsm~dsltp~~~lv~m~l 364 (559)
T PRK05482 285 LAAMLVLFLAGLAVTMWAELQGNPALAALGIDGNMEGKEVRFGIAASALFAVVTTAASTGAVNAMHDSLTPLGGLVPLLN 364 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcchhhccCCCCcccchhhhhhHHHHHHHHHHhhhhcchHHHHHHhhccHHHHHHHHH
Confidence 55555677777777777772 1 2 6689999999988888 532 23455566665555
Q ss_pred hhhh
Q 005788 347 SSGG 350 (677)
Q Consensus 347 il~G 350 (677)
|+.|
T Consensus 365 MfIG 368 (559)
T PRK05482 365 MQLG 368 (559)
T ss_pred HHhC
Confidence 5443
No 365
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=52.90 E-value=1.4e+02 Score=31.96 Aligned_cols=41 Identities=24% Similarity=0.118 Sum_probs=33.3
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHH
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l 428 (677)
+.+|.|+|.|-.|..+.-.|...+ ++|.++++..+.++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G------~~V~lv~r~~~~~~~i~ 42 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG------LPVRLILRDRQRLAAYQ 42 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC------CCeEEEEechHHHHHHh
Confidence 457999999999999999998764 67888988776666554
No 366
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.53 E-value=45 Score=33.91 Aligned_cols=74 Identities=12% Similarity=0.028 Sum_probs=47.3
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCC-hHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD-KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d-~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-- 457 (677)
...++|.|.+. .|..++++|.+.+ ..|+++... ++..+++ . ..++.++.+|.++++.++++-
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G------~~v~~~~~~~~~~~~~l-~-------~~~~~~~~~Dl~~~~~~~~~~~~ 72 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREG------AKVAVLYNSAENEAKEL-R-------EKGVFTIKCDVGNRDQVKKSKEV 72 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC------CEEEEEeCCcHHHHHHH-H-------hCCCeEEEecCCCHHHHHHHHHH
Confidence 35688888754 6889999998764 456665443 3333322 2 124678899999998877641
Q ss_pred ----cccccEEEEecC
Q 005788 458 ----VSKARAIIVLAS 469 (677)
Q Consensus 458 ----I~~A~aVIIltd 469 (677)
..+.|.+|-.+.
T Consensus 73 ~~~~~~~id~li~~ag 88 (255)
T PRK06463 73 VEKEFGRVDVLVNNAG 88 (255)
T ss_pred HHHHcCCCCEEEECCC
Confidence 135677776664
No 367
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=52.47 E-value=53 Score=33.18 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=47.7
Q ss_pred ecCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCC--CHHHHhcc-
Q 005788 381 EKNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPL--ILADLKKV- 456 (677)
Q Consensus 381 ~knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~--~~e~L~rA- 456 (677)
..+.++|.|.+. .|..++++|...+ ..|++++++.+..++..+++.. ....++.++.+|.. +++.++++
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G------~~Vi~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~d~~~~~~~~~~~~~ 83 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHG------ATVILLGRTEEKLEAVYDEIEA-AGGPQPAIIPLDLLTATPQNYQQLA 83 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC------CcEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEecccCCCHHHHHHHH
Confidence 456788888765 6889999998753 5788888887766554443211 11224555666664 33333221
Q ss_pred -----CcccccEEEEecC
Q 005788 457 -----SVSKARAIIVLAS 469 (677)
Q Consensus 457 -----~I~~A~aVIIltd 469 (677)
.....|.+|-.+.
T Consensus 84 ~~~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 84 DTIEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHHHhCCCCEEEECCc
Confidence 1124566666553
No 368
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=51.97 E-value=11 Score=43.12 Aligned_cols=67 Identities=12% Similarity=0.187 Sum_probs=42.1
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEE------EEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHh
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVV------LAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLK 454 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVV------LiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~ 454 (677)
....|+|+|||..|..-+-.|+.. |..|+ .+|.+.+..+.+.++ +. ...++.
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdS------GvnVvvglr~~~id~~~~s~~kA~~d--------GF--------~v~~~~ 92 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDS------GLDISYALRKEAIAEKRASWRKATEN--------GF--------KVGTYE 92 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccc------cceeEEeccccccccccchHHHHHhc--------CC--------ccCCHH
Confidence 467899999999999555555443 46677 445444444443221 11 112344
Q ss_pred ccCcccccEEEEecCC
Q 005788 455 KVSVSKARAIIVLASD 470 (677)
Q Consensus 455 rA~I~~A~aVIIltdd 470 (677)
++ +.+||.|++++++
T Consensus 93 Ea-~~~ADvVviLlPD 107 (487)
T PRK05225 93 EL-IPQADLVINLTPD 107 (487)
T ss_pred HH-HHhCCEEEEcCCh
Confidence 44 8899999999985
No 369
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=51.54 E-value=1.6e+02 Score=32.73 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=29.8
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
.+.+|+|+|.|..|..+++.|...+- ..++++|.|.
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gv-----g~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGV-----GTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEeCCE
Confidence 57899999999999999999998753 4677888773
No 370
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=51.43 E-value=10 Score=44.18 Aligned_cols=53 Identities=19% Similarity=0.356 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHhhhccCCCC-ccCCCCCeEEeeeehhhhHHHHHHHHHHHHHH
Q 005788 312 SSFAEALWLSWTFVADSGNHA-DRVGTGPRIVSVSISSGGMLIFAMMLGLVSDA 364 (677)
Q Consensus 312 ~s~~dAlw~t~vTiTTvGyg~-~p~t~~gRi~~v~lil~Gi~ifa~lig~it~~ 364 (677)
.++..|.||+|-.+...|-|. .|.+.-.|++++++.=+.+++++.-++-++..
T Consensus 612 lnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAF 665 (993)
T KOG4440|consen 612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAF 665 (993)
T ss_pred cchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhh
Confidence 689999999999999999974 57888889888877655666665555555544
No 371
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=51.42 E-value=18 Score=32.37 Aligned_cols=31 Identities=16% Similarity=-0.004 Sum_probs=22.8
Q ss_pred CCceEEEEccccCHHHHHHHHHhhcCCccEEEEE
Q 005788 641 YPEKILFCGWRRDIDDMIMVIFLQLCLLSLVHLH 674 (677)
Q Consensus 641 ~~~rVLI~Gwgr~~~~~i~~Ld~~~~~~~~~~~~ 674 (677)
+-++|||+|+|+.+..-++ ..+.-|..|+|+
T Consensus 6 ~~~~vlVvGgG~va~~k~~---~Ll~~gA~v~vi 36 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKAR---LLLEAGAKVTVI 36 (103)
T ss_dssp TT-EEEEEEESHHHHHHHH---HHCCCTBEEEEE
T ss_pred CCCEEEEECCCHHHHHHHH---HHHhCCCEEEEE
Confidence 4679999999998875544 456678888775
No 372
>PRK06701 short chain dehydrogenase; Provisional
Probab=51.16 E-value=51 Score=34.70 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=49.3
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChH-HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e-~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
..++|.|.+. .|..++++|.+.+ ..|+++..+.+ ..+....... ..+.++.++.+|..+.+.++++--
T Consensus 47 k~iLItGasggIG~~la~~l~~~G------~~V~l~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~i 118 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEG------ADIAIVYLDEHEDANETKQRVE--KEGVKCLLIPGDVSDEAFCKDAVEET 118 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC------CEEEEEeCCcchHHHHHHHHHH--hcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 5788888755 6889999998764 56777766532 2222222111 113467788999999888765311
Q ss_pred ----ccccEEEEecC
Q 005788 459 ----SKARAIIVLAS 469 (677)
Q Consensus 459 ----~~A~aVIIltd 469 (677)
.+.|.+|-.+.
T Consensus 119 ~~~~~~iD~lI~~Ag 133 (290)
T PRK06701 119 VRELGRLDILVNNAA 133 (290)
T ss_pred HHHcCCCCEEEECCc
Confidence 24577776554
No 373
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=51.08 E-value=40 Score=31.72 Aligned_cols=108 Identities=25% Similarity=0.255 Sum_probs=50.3
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLi-D~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~ 459 (677)
.+-+|-|+|.|++|..|.+.|...+ +.|+-+ .++.+..+++...+ ++. ...++.++ ++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag------~~v~~v~srs~~sa~~a~~~~-------------~~~-~~~~~~~~-~~ 67 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAG------HEVVGVYSRSPASAERAAAFI-------------GAG-AILDLEEI-LR 67 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTT------SEEEEESSCHH-HHHHHHC---------------TT------TTGG-GC
T ss_pred CccEEEEECCCHHHHHHHHHHHHCC------CeEEEEEeCCccccccccccc-------------ccc-cccccccc-cc
Confidence 4678999999999999999998764 455554 45554444432211 111 11222222 56
Q ss_pred cccEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCCHHHH---HHcCC
Q 005788 460 KARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLV---KLVGG 516 (677)
Q Consensus 460 ~A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~~~~l---~~aGa 516 (677)
+||.+|+..+| |+-. .++-.+.........++|+-..-.-..+.| +..|+
T Consensus 68 ~aDlv~iavpD------daI~-~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga 120 (127)
T PF10727_consen 68 DADLVFIAVPD------DAIA-EVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGA 120 (127)
T ss_dssp C-SEEEE-S-C------CHHH-HHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-
T ss_pred cCCEEEEEech------HHHH-HHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCC
Confidence 89999999974 4322 122222222101134688776544444333 44554
No 374
>PLN02477 glutamate dehydrogenase
Probab=50.90 E-value=56 Score=36.90 Aligned_cols=34 Identities=9% Similarity=0.102 Sum_probs=26.7
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEE-EEcCC
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVV-LAERD 420 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVV-LiD~d 420 (677)
...+++|.|+|.+|..+++.|.+.+ ..|| +.|.+
T Consensus 205 ~g~~VaIqGfGnVG~~~A~~L~e~G------akVVaVsD~~ 239 (410)
T PLN02477 205 AGQTFVIQGFGNVGSWAAQLIHEKG------GKIVAVSDIT 239 (410)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcC------CEEEEEECCC
Confidence 3568999999999999999887654 4455 77776
No 375
>PRK07411 hypothetical protein; Validated
Probab=50.80 E-value=1.6e+02 Score=33.04 Aligned_cols=83 Identities=12% Similarity=-0.066 Sum_probs=51.6
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHh-------------------hhcccCCccEE
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAK-------------------LEFDFMGTSVI 441 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~-------------------~~~~~~~~~V~ 441 (677)
.+-||+|+|.|-.|..+++.|...+- ..++++|.|.-+...+-++ +..-....+|.
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gv-----g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~ 111 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGI-----GRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVD 111 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEE
Confidence 46799999999999999999998763 3577777775332222111 10001234566
Q ss_pred EEEeCCCCHHHHhccCcccccEEEEecCC
Q 005788 442 CRSGSPLILADLKKVSVSKARAIIVLASD 470 (677)
Q Consensus 442 ~I~Gd~~~~e~L~rA~I~~A~aVIIltdd 470 (677)
.+....+.....+- +.++|.||-.+|+
T Consensus 112 ~~~~~~~~~~~~~~--~~~~D~Vvd~~d~ 138 (390)
T PRK07411 112 LYETRLSSENALDI--LAPYDVVVDGTDN 138 (390)
T ss_pred EEecccCHHhHHHH--HhCCCEEEECCCC
Confidence 66665544333222 5678888888864
No 376
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=50.78 E-value=80 Score=33.69 Aligned_cols=70 Identities=17% Similarity=0.107 Sum_probs=45.5
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..+|.|+|.|..|..++..|...+. ...|++.+.+++..+...+ . +.... . ..+. .+ .+++|
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~----~~~V~~~dr~~~~~~~a~~-~-----g~~~~-~---~~~~---~~-~~~~a 67 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGL----AGEIVGADRSAETRARARE-L-----GLGDR-V---TTSA---AE-AVKGA 67 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCC----CcEEEEEECCHHHHHHHHh-C-----CCCce-e---cCCH---HH-HhcCC
Confidence 3579999999999999999986531 2468889999887665432 1 11000 1 1121 11 23579
Q ss_pred cEEEEecC
Q 005788 462 RAIIVLAS 469 (677)
Q Consensus 462 ~aVIIltd 469 (677)
|.||+.++
T Consensus 68 DvViiavp 75 (307)
T PRK07502 68 DLVILCVP 75 (307)
T ss_pred CEEEECCC
Confidence 99999996
No 377
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=50.55 E-value=38 Score=36.31 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=46.4
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
...+++|+|+|..|..++..|...+ ..|.+++++++..+.. +.+ +..++ ..+++.+ .+.+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G------a~V~v~~r~~~~~~~~-~~~-------G~~~~-----~~~~l~~-~l~~ 210 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG------ANVTVGARKSAHLARI-TEM-------GLSPF-----HLSELAE-EVGK 210 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC------CEEEEEECCHHHHHHH-HHc-------CCeee-----cHHHHHH-HhCC
Confidence 3579999999999999999998653 5788889887664433 211 11111 2234432 3558
Q ss_pred ccEEEEecC
Q 005788 461 ARAIIVLAS 469 (677)
Q Consensus 461 A~aVIIltd 469 (677)
||.||..++
T Consensus 211 aDiVI~t~p 219 (296)
T PRK08306 211 IDIIFNTIP 219 (296)
T ss_pred CCEEEECCC
Confidence 999998875
No 378
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=50.36 E-value=48 Score=39.74 Aligned_cols=83 Identities=16% Similarity=0.072 Sum_probs=54.3
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-- 458 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-- 458 (677)
...++|.|.+. .|..++++|...+ ..|++++++.+..+...+++........+.++.+|.++.+.++++--
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~G------a~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i 487 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEG------AHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADV 487 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCC------CEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 35678888755 6889999998754 67888888877665544332211112356778899999887765421
Q ss_pred ----ccccEEEEecCC
Q 005788 459 ----SKARAIIVLASD 470 (677)
Q Consensus 459 ----~~A~aVIIltdd 470 (677)
...|.+|-.+..
T Consensus 488 ~~~~g~iDilV~nAG~ 503 (676)
T TIGR02632 488 ALAYGGVDIVVNNAGI 503 (676)
T ss_pred HHhcCCCcEEEECCCC
Confidence 245777766653
No 379
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=50.21 E-value=28 Score=38.89 Aligned_cols=39 Identities=21% Similarity=0.071 Sum_probs=33.3
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHH
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l 428 (677)
+|-|+|.|..|..++..|...+ +.|++.|.+++.++.+.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G------~~V~~~d~~~~~v~~l~ 40 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLG------HEVTGVDIDQEKVDKLN 40 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcC------CeEEEEECCHHHHHHhh
Confidence 5889999999999999998754 68999999998887643
No 380
>PRK07985 oxidoreductase; Provisional
Probab=50.01 E-value=59 Score=34.30 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=47.7
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCC--hHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc---
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERD--KEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--- 456 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d--~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA--- 456 (677)
..++|.|.+. .|..++++|...+ ..|++...+ .+..++..+... ..+.++.++.+|.++.+.++++
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G------~~Vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~ 121 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREG------ADVAISYLPVEEEDAQDVKKIIE--ECGRKAVLLPGDLSDEKFARSLVHE 121 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC------CEEEEecCCcchhhHHHHHHHHH--HcCCeEEEEEccCCCHHHHHHHHHH
Confidence 5788888765 6889999998764 567776543 223333221111 0134577888999998876653
Q ss_pred ---CcccccEEEEecC
Q 005788 457 ---SVSKARAIIVLAS 469 (677)
Q Consensus 457 ---~I~~A~aVIIltd 469 (677)
...+-|.+|..+.
T Consensus 122 ~~~~~g~id~lv~~Ag 137 (294)
T PRK07985 122 AHKALGGLDIMALVAG 137 (294)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1223466666553
No 381
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=49.86 E-value=1.5e+02 Score=33.24 Aligned_cols=118 Identities=17% Similarity=0.121 Sum_probs=68.0
Q ss_pred eecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHH-----Hhh-hcccCCccEEEEEeCCCCHHHH
Q 005788 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI-----AKL-EFDFMGTSVICRSGSPLILADL 453 (677)
Q Consensus 380 ~~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l-----~~~-~~~~~~~~V~~I~Gd~~~~e~L 453 (677)
+....++|+|.|+ |. -++||.+.- +-..++++|-||+-+|-.. ++. ...+.+.++.++..|+.+ .
T Consensus 288 ~~a~~vLvlGGGD-GL-AlRellkyP----~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~---w 358 (508)
T COG4262 288 RGARSVLVLGGGD-GL-ALRELLKYP----QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ---W 358 (508)
T ss_pred cccceEEEEcCCc-hH-HHHHHHhCC----CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH---H
Confidence 4567999999998 33 346777643 1257899999997555332 111 233456788888777543 3
Q ss_pred hccCcccccEEEEecCCCCCccch-HHHH-HHHHHHhhhcCCCCceEEEEeCCCCCH
Q 005788 454 KKVSVSKARAIIVLASDENADQSD-ARAL-RVVLSLTGVKEGLRGHVVVEMSDLDNE 508 (677)
Q Consensus 454 ~rA~I~~A~aVIIltdd~~~~~sD-a~NI-~i~Lsar~l~p~l~~~IIArv~d~e~~ 508 (677)
.|-..+.-|.+|+.-.|.+....- --.. .-.+..+.+++ ....|++..++-+.
T Consensus 359 lr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e--~Gl~VvQags~y~t 413 (508)
T COG4262 359 LRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAE--TGLMVVQAGSPYFT 413 (508)
T ss_pred HHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCc--CceEEEecCCCccC
Confidence 444556899999988763211000 0000 12344455555 45566666665443
No 382
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=49.83 E-value=87 Score=33.79 Aligned_cols=77 Identities=18% Similarity=0.041 Sum_probs=43.5
Q ss_pred CeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCCh--HHHHHHHHhhhcc--cCCccEEEEEeCCCCHHHHhccC
Q 005788 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDK--EEMEMDIAKLEFD--FMGTSVICRSGSPLILADLKKVS 457 (677)
Q Consensus 383 nHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~--e~~e~~l~~~~~~--~~~~~V~~I~Gd~~~~e~L~rA~ 457 (677)
.+|.|+|. |..|..++..|...+. ...|+++|.++ +.++....++... ..+.+. -+.+. .+.+ .
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~----~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~-~i~~~-~d~~-----~ 69 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV----VKEINLISRPKSLEKLKGLRLDIYDALAAAGIDA-EIKIS-SDLS-----D 69 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC----CCEEEEEECcccccccccccchhhhchhccCCCc-EEEEC-CCHH-----H
Confidence 37899998 9999999999886531 13588888754 2222111111000 011112 12332 1222 2
Q ss_pred cccccEEEEecCC
Q 005788 458 VSKARAIIVLASD 470 (677)
Q Consensus 458 I~~A~aVIIltdd 470 (677)
+.+||.+|++.+.
T Consensus 70 l~~aDiViitag~ 82 (309)
T cd05294 70 VAGSDIVIITAGV 82 (309)
T ss_pred hCCCCEEEEecCC
Confidence 7789999999875
No 383
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=49.78 E-value=52 Score=33.99 Aligned_cols=41 Identities=27% Similarity=0.272 Sum_probs=30.8
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHH
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~ 429 (677)
|-|+|-|.+. .|..++++|.+.+ ..|+++-++++.+++...
T Consensus 6 nTiLITGG~sGIGl~lak~f~elg------N~VIi~gR~e~~L~e~~~ 47 (245)
T COG3967 6 NTILITGGASGIGLALAKRFLELG------NTVIICGRNEERLAEAKA 47 (245)
T ss_pred cEEEEeCCcchhhHHHHHHHHHhC------CEEEEecCcHHHHHHHHh
Confidence 4556666554 5788999998874 679999999988887654
No 384
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=49.45 E-value=32 Score=35.17 Aligned_cols=71 Identities=13% Similarity=0.072 Sum_probs=47.8
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
.+.++|.|.+. .|..++++|...+ ..|++++.+++..+ ..++.++.+|.++++.++++-
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G------~~v~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~~~~~~~~~ 71 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANG------ANVVNADIHGGDGQ-----------HENYQFVPTDVSSAEEVNHTVAEI 71 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC------CEEEEEeCCccccc-----------cCceEEEEccCCCHHHHHHHHHHH
Confidence 45788888754 6888999998764 67888887664321 125667889999988776531
Q ss_pred ---cccccEEEEecC
Q 005788 458 ---VSKARAIIVLAS 469 (677)
Q Consensus 458 ---I~~A~aVIIltd 469 (677)
....|.+|-.+.
T Consensus 72 ~~~~g~id~li~~Ag 86 (266)
T PRK06171 72 IEKFGRIDGLVNNAG 86 (266)
T ss_pred HHHcCCCCEEEECCc
Confidence 124567766553
No 385
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.22 E-value=45 Score=34.36 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=36.3
Q ss_pred cCeEEEEec---cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 005788 382 KNHILILGW---SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (677)
Q Consensus 382 knHIII~G~---g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~r 455 (677)
..+++|.|. +..|..++++|.+++ ..|++...+. +.++.++++..+. + ...++.+|.++.+..++
T Consensus 6 ~k~~lITGa~~~~GIG~a~a~~l~~~G------~~v~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~Dv~~~~~v~~ 73 (261)
T PRK08690 6 GKKILITGMISERSIAYGIAKACREQG------AELAFTYVVD-KLEERVRKMAAEL-D-SELVFRCDVASDDEINQ 73 (261)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHCC------CEEEEEcCcH-HHHHHHHHHHhcc-C-CceEEECCCCCHHHHHH
Confidence 457899995 347999999998764 5677665432 1122222211111 1 12356677777666554
No 386
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.21 E-value=59 Score=33.51 Aligned_cols=64 Identities=9% Similarity=0.044 Sum_probs=37.5
Q ss_pred CeEEEEeccc---hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 005788 383 NHILILGWSD---KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (677)
Q Consensus 383 nHIII~G~g~---~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~r 455 (677)
..++|.|.+. .|..++++|.+++ ..|++.+++. ..++.++++.... + ...++..|.++++..++
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G------~~v~~~~r~~-~~~~~~~~l~~~~-g-~~~~~~~Dv~~~~~v~~ 75 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHG------AELWFTYQSE-VLEKRVKPLAEEI-G-CNFVSELDVTNPKSISN 75 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcC------CEEEEEeCch-HHHHHHHHHHHhc-C-CceEEEccCCCHHHHHH
Confidence 4678889974 6889999998754 5677777663 2222222221111 1 12345677777766554
No 387
>PRK12744 short chain dehydrogenase; Provisional
Probab=49.15 E-value=60 Score=33.02 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=49.1
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEc----CChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAE----RDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD----~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA 456 (677)
..+++|.|.+. .|..+++.|.+.+ ..|+++. .+.+..++..+++.. .+.++.++.+|.++++.++++
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G------~~vv~i~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~ 79 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQG------AKAVAIHYNSAASKADAEETVAAVKA--AGAKAVAFQADLTTAAAVEKL 79 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCC------CcEEEEecCCccchHHHHHHHHHHHH--hCCcEEEEecCcCCHHHHHHH
Confidence 35788888665 5889999998654 3444442 223333333322211 123577889999999888754
Q ss_pred C------cccccEEEEecCC
Q 005788 457 S------VSKARAIIVLASD 470 (677)
Q Consensus 457 ~------I~~A~aVIIltdd 470 (677)
- ..+.|.+|..+..
T Consensus 80 ~~~~~~~~~~id~li~~ag~ 99 (257)
T PRK12744 80 FDDAKAAFGRPDIAINTVGK 99 (257)
T ss_pred HHHHHHhhCCCCEEEECCcc
Confidence 2 2356777776653
No 388
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=48.98 E-value=2.8e+02 Score=27.46 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=46.3
Q ss_pred eecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccC-CccEEEEEeCCCCHHHHhccCc
Q 005788 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFM-GTSVICRSGSPLILADLKKVSV 458 (677)
Q Consensus 380 ~~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~-~~~V~~I~Gd~~~~e~L~rA~I 458 (677)
...++++-+|.|. |.-.+.-..... ....|+.+|.+++.++.+.++.. .+. ..++.++.||..+ .+... -
T Consensus 39 ~~~~~vlDlG~Gt-G~~s~~~a~~~~----~~~~v~avD~~~~~~~~a~~n~~-~~g~~~~v~~~~~d~~~--~l~~~-~ 109 (198)
T PRK00377 39 RKGDMILDIGCGT-GSVTVEASLLVG----ETGKVYAVDKDEKAINLTRRNAE-KFGVLNNIVLIKGEAPE--ILFTI-N 109 (198)
T ss_pred CCcCEEEEeCCcC-CHHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHHHH-HhCCCCCeEEEEechhh--hHhhc-C
Confidence 3567899999986 432222211111 12469999999887765443321 111 2467888898753 23332 2
Q ss_pred ccccEEEEec
Q 005788 459 SKARAIIVLA 468 (677)
Q Consensus 459 ~~A~aVIIlt 468 (677)
..+|.|++..
T Consensus 110 ~~~D~V~~~~ 119 (198)
T PRK00377 110 EKFDRIFIGG 119 (198)
T ss_pred CCCCEEEECC
Confidence 4789988844
No 389
>PRK12367 short chain dehydrogenase; Provisional
Probab=48.86 E-value=1.4e+02 Score=30.64 Aligned_cols=73 Identities=16% Similarity=0.014 Sum_probs=48.8
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~-e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
..++|.|.+. .|..++++|...+ ..|+++++++ +..+... + . ...++..|.++.+.+++. ..+
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G------~~Vi~~~r~~~~~~~~~~-----~--~-~~~~~~~D~~~~~~~~~~-~~~ 79 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKG------AKVIGLTHSKINNSESND-----E--S-PNEWIKWECGKEESLDKQ-LAS 79 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC------CEEEEEECCchhhhhhhc-----c--C-CCeEEEeeCCCHHHHHHh-cCC
Confidence 5788888865 6889999998764 5777777765 2222111 0 1 124678899999887753 456
Q ss_pred ccEEEEecCC
Q 005788 461 ARAIIVLASD 470 (677)
Q Consensus 461 A~aVIIltdd 470 (677)
.|.+|-.+..
T Consensus 80 iDilVnnAG~ 89 (245)
T PRK12367 80 LDVLILNHGI 89 (245)
T ss_pred CCEEEECCcc
Confidence 8888887753
No 390
>PRK06398 aldose dehydrogenase; Validated
Probab=48.84 E-value=41 Score=34.52 Aligned_cols=68 Identities=10% Similarity=-0.034 Sum_probs=47.5
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC----
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS---- 457 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~---- 457 (677)
..++|.|.+. .|..++++|...+ ..|++.+++.+. ...+.++.+|.++++.++++-
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G------~~Vi~~~r~~~~-------------~~~~~~~~~D~~~~~~i~~~~~~~~ 67 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEG------SNVINFDIKEPS-------------YNDVDYFKVDVSNKEQVIKGIDYVI 67 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC------CeEEEEeCCccc-------------cCceEEEEccCCCHHHHHHHHHHHH
Confidence 5788888765 5889999998764 567777766432 124678899999988876631
Q ss_pred --cccccEEEEecC
Q 005788 458 --VSKARAIIVLAS 469 (677)
Q Consensus 458 --I~~A~aVIIltd 469 (677)
...-|.+|-.+.
T Consensus 68 ~~~~~id~li~~Ag 81 (258)
T PRK06398 68 SKYGRIDILVNNAG 81 (258)
T ss_pred HHcCCCCEEEECCC
Confidence 124677777654
No 391
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=48.72 E-value=66 Score=36.16 Aligned_cols=39 Identities=23% Similarity=0.082 Sum_probs=32.3
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHH
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l 428 (677)
+|-|+|.|-+|....--|.+. ||+||.+|.|+++++.+.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~------GHeVv~vDid~~KV~~ln 40 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL------GHEVVCVDIDESKVELLN 40 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc------CCeEEEEeCCHHHHHHHh
Confidence 678999999888877777765 489999999999888754
No 392
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.45 E-value=56 Score=37.31 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=43.6
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
..++|+|+|.|..|..+++.|...+ ..|.+.|+++....+.++ ..++.+..|.- +.+.+ ++
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G------~~V~~~D~~~~~~~~~l~-------~~gi~~~~~~~-~~~~~-----~~ 74 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELG------CDVVVADDNETARHKLIE-------VTGVADISTAE-ASDQL-----DS 74 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCC------CEEEEECCChHHHHHHHH-------hcCcEEEeCCC-chhHh-----cC
Confidence 4567999999999999998887653 678889977654433222 13556665532 12223 45
Q ss_pred ccEEEEec
Q 005788 461 ARAIIVLA 468 (677)
Q Consensus 461 A~aVIIlt 468 (677)
++.||+-.
T Consensus 75 ~d~vV~Sp 82 (473)
T PRK00141 75 FSLVVTSP 82 (473)
T ss_pred CCEEEeCC
Confidence 66665533
No 393
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=48.43 E-value=1.2e+02 Score=31.49 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=29.5
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChH
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE 422 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e 422 (677)
.+-+|+|+|.|..|..+++.|...+- ..++++|.|.-
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gv-----g~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGV-----GNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCcc
Confidence 46799999999999999999998753 35677777653
No 394
>PRK12742 oxidoreductase; Provisional
Probab=48.29 E-value=57 Score=32.51 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=46.1
Q ss_pred cCeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEc-CChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 005788 382 KNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAE-RDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (677)
Q Consensus 382 knHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD-~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-- 457 (677)
.+.++|.|.+ ..|..++++|...+ ..|++.. ++++..+++..+ .++.++.+|.++.+.+.++-
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G------~~v~~~~~~~~~~~~~l~~~-------~~~~~~~~D~~~~~~~~~~~~~ 72 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDG------ANVRFTYAGSKDAAERLAQE-------TGATAVQTDSADRDAVIDVVRK 72 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC------CEEEEecCCCHHHHHHHHHH-------hCCeEEecCCCCHHHHHHHHHH
Confidence 3578899875 57889999998754 4555554 345555544332 13456788888877665431
Q ss_pred cccccEEEEecC
Q 005788 458 VSKARAIIVLAS 469 (677)
Q Consensus 458 I~~A~aVIIltd 469 (677)
..+-|.+|-.+.
T Consensus 73 ~~~id~li~~ag 84 (237)
T PRK12742 73 SGALDILVVNAG 84 (237)
T ss_pred hCCCcEEEECCC
Confidence 123566766653
No 395
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=48.26 E-value=45 Score=38.10 Aligned_cols=78 Identities=17% Similarity=0.122 Sum_probs=42.6
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..-|+++|.|+ |.-...-+.. ....++...|..+|+++..+..+.+....+-.+..|.+++||..+.+.=+ +|
T Consensus 187 ~~vVldVGAGr-GpL~~~al~A-~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-----kv 259 (448)
T PF05185_consen 187 DKVVLDVGAGR-GPLSMFALQA-GARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-----KV 259 (448)
T ss_dssp T-EEEEES-TT-SHHHHHHHHT-THHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS------E
T ss_pred ceEEEEeCCCc-cHHHHHHHHH-HHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-----ce
Confidence 45677899996 4433333322 11112346899999998655433222122223567999999977766544 77
Q ss_pred cEEEE
Q 005788 462 RAIIV 466 (677)
Q Consensus 462 ~aVII 466 (677)
|.||.
T Consensus 260 DIIVS 264 (448)
T PF05185_consen 260 DIIVS 264 (448)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77765
No 396
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=48.13 E-value=29 Score=36.76 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=34.6
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHH
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~ 429 (677)
.+|.|+|.|..|..++..|...+ +.|++.|.+++.++.+.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G------~~V~~~d~~~~~~~~~~~ 42 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG------FQTTLVDIKQEQLESAQQ 42 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC------CcEEEEeCCHHHHHHHHH
Confidence 46899999999999999998764 789999999988877543
No 397
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=47.73 E-value=3.4e+02 Score=28.44 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=47.7
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhh---cccCCccEEEEEeCCCCHHHHhccCc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE---FDFMGTSVICRSGSPLILADLKKVSV 458 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~---~~~~~~~V~~I~Gd~~~~e~L~rA~I 458 (677)
..+|+++|.|. | .+++++.... ....++++|.|++.++...+.+. ..+...++.++.+|+. +.|++. -
T Consensus 73 p~~VL~iG~G~-G-~~~~~ll~~~----~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~--~~l~~~-~ 143 (270)
T TIGR00417 73 PKHVLVIGGGD-G-GVLREVLKHK----SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGF--KFLADT-E 143 (270)
T ss_pred CCEEEEEcCCc-h-HHHHHHHhCC----CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchH--HHHHhC-C
Confidence 35999999996 3 2455665432 12469999999876665433211 1112345677777753 334443 3
Q ss_pred ccccEEEEecCC
Q 005788 459 SKARAIIVLASD 470 (677)
Q Consensus 459 ~~A~aVIIltdd 470 (677)
++.|.||+...+
T Consensus 144 ~~yDvIi~D~~~ 155 (270)
T TIGR00417 144 NTFDVIIVDSTD 155 (270)
T ss_pred CCccEEEEeCCC
Confidence 578999886653
No 398
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=47.41 E-value=1.2e+02 Score=32.54 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=45.5
Q ss_pred EEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhccc-CCccEEEEEeCCCCHHHHhccCcccccE
Q 005788 385 ILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDF-MGTSVICRSGSPLILADLKKVSVSKARA 463 (677)
Q Consensus 385 III~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~-~~~~V~~I~Gd~~~~e~L~rA~I~~A~a 463 (677)
|.|+|.|.+|..++-.|...+ -...++++|.+++..+....++..-. ....+.+..+ .+.+ .+.+||.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~----~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~~~-----~l~~aDi 69 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKG----LASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GDYA-----DAADADI 69 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcC----CCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CCHH-----HhCCCCE
Confidence 479999999999998776543 12579999988765555444332100 0011222211 2222 5678999
Q ss_pred EEEecCC
Q 005788 464 IIVLASD 470 (677)
Q Consensus 464 VIIltdd 470 (677)
||++...
T Consensus 70 VIitag~ 76 (300)
T cd00300 70 VVITAGA 76 (300)
T ss_pred EEEcCCC
Confidence 9998875
No 399
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.07 E-value=69 Score=33.49 Aligned_cols=76 Identities=13% Similarity=0.076 Sum_probs=47.2
Q ss_pred cCeEEEEecc---chHHHHHHHHHHhcccCCCCeEEEEEcCCh---HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 005788 382 KNHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAERDK---EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (677)
Q Consensus 382 knHIII~G~g---~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~---e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~r 455 (677)
...++|.|.+ ..|..+++.|...+ ..|++++++. +.++++.+++ +.. .++..|.++.+..++
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G------~~Vil~~r~~~~~~~~~~~~~~~-----~~~-~~~~~Dv~d~~~v~~ 72 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQG------AELAFTYLNEALKKRVEPIAQEL-----GSD-YVYELDVSKPEHFKS 72 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCC------CEEEEEecCHHHHHHHHHHHHhc-----CCc-eEEEecCCCHHHHHH
Confidence 4578899984 47999999998764 5677887764 2333332221 112 467889998887654
Q ss_pred c------CcccccEEEEecC
Q 005788 456 V------SVSKARAIIVLAS 469 (677)
Q Consensus 456 A------~I~~A~aVIIltd 469 (677)
+ ...+-|.+|-.+.
T Consensus 73 ~~~~i~~~~g~iDilVnnAG 92 (274)
T PRK08415 73 LAESLKKDLGKIDFIVHSVA 92 (274)
T ss_pred HHHHHHHHcCCCCEEEECCc
Confidence 3 1123466665543
No 400
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=47.06 E-value=1.3e+02 Score=31.23 Aligned_cols=69 Identities=9% Similarity=0.091 Sum_probs=44.3
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~a 463 (677)
+|-|+|.|..|..+++.|...+. ....+.+.+++++..++..+++ . ++.. ..+.+.+ +++||.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~---~~~~i~v~~r~~~~~~~l~~~~-----~-~~~~----~~~~~~~----~~~aDv 64 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA---DVSEIIVSPRNAQIAARLAERF-----P-KVRI----AKDNQAV----VDRSDV 64 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC---ChheEEEECCCHHHHHHHHHHc-----C-CceE----eCCHHHH----HHhCCE
Confidence 58899999999999999986542 1134677888887766554321 0 1111 1233333 346899
Q ss_pred EEEecC
Q 005788 464 IIVLAS 469 (677)
Q Consensus 464 VIIltd 469 (677)
||+...
T Consensus 65 Vilav~ 70 (258)
T PRK06476 65 VFLAVR 70 (258)
T ss_pred EEEEeC
Confidence 999886
No 401
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.04 E-value=69 Score=32.59 Aligned_cols=79 Identities=14% Similarity=0.058 Sum_probs=46.1
Q ss_pred CeEEEEecc---chHHHHHHHHHHhcccCCCCeEEEEEcCC-----------hHHHHHHHHhhhcccCCccEEEEEeCCC
Q 005788 383 NHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAERD-----------KEEMEMDIAKLEFDFMGTSVICRSGSPL 448 (677)
Q Consensus 383 nHIII~G~g---~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d-----------~e~~e~~l~~~~~~~~~~~V~~I~Gd~~ 448 (677)
+.++|.|.+ ..|..++++|...+ ..|+++.++ .+......+... ..+.++.++..|..
T Consensus 6 k~vlItGas~~~giG~~la~~l~~~G------~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~ 77 (256)
T PRK12748 6 KIALVTGASRLNGIGAAVCRRLAAKG------IDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIE--SYGVRCEHMEIDLS 77 (256)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHcC------CcEEEEcCCccccccccccchhhHHHHHHHHH--hcCCeEEEEECCCC
Confidence 568999986 48999999998754 466776654 111111111111 11345778888888
Q ss_pred CHHHHhccC------cccccEEEEecC
Q 005788 449 ILADLKKVS------VSKARAIIVLAS 469 (677)
Q Consensus 449 ~~e~L~rA~------I~~A~aVIIltd 469 (677)
+.+.++.+- ...-|.+|-.+.
T Consensus 78 ~~~~~~~~~~~~~~~~g~id~vi~~ag 104 (256)
T PRK12748 78 QPYAPNRVFYAVSERLGDPSILINNAA 104 (256)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 877764421 123466666553
No 402
>PRK10750 potassium transporter; Provisional
Probab=46.92 E-value=47 Score=38.35 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhhhccCCCHHHHHHHHHHhhhccCCCCcc
Q 005788 295 TIFLIIFGGLALYAVSDSSFAEALWLSWTFVADSGNHADR 334 (677)
Q Consensus 295 ~l~lil~g~l~~~~iE~~s~~dAlw~t~vTiTTvGyg~~p 334 (677)
-+.+.+++.++| ++.+++++||++.++.++.|-||...+
T Consensus 189 Y~~lT~~~~~ll-~~~Gm~~fdAi~ha~saisTgGFs~~~ 227 (483)
T PRK10750 189 YVLLTVACALAL-WFAGMDAFDAIGHSFSTIAIGGFSTHD 227 (483)
T ss_pred HHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHhccCcCCCc
Confidence 334445555554 567999999999999999999995433
No 403
>PLN00016 RNA-binding protein; Provisional
Probab=46.91 E-value=97 Score=33.96 Aligned_cols=81 Identities=21% Similarity=0.088 Sum_probs=49.3
Q ss_pred ecCeEEEE----ec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHh-h--hcccCCccEEEEEeCCCCHHH
Q 005788 381 EKNHILIL----GW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAK-L--EFDFMGTSVICRSGSPLILAD 452 (677)
Q Consensus 381 ~knHIII~----G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~-~--~~~~~~~~V~~I~Gd~~~~e~ 452 (677)
++..|+|+ |. |-.|..++++|...+ +.|+++.++++........ . ..++...++.++.||..+.+.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G------~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~ 124 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAG------HEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKS 124 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCC------CEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHh
Confidence 45679999 75 668999999998764 6777777665432211000 0 000112357889999877433
Q ss_pred HhccCcccccEEEEecC
Q 005788 453 LKKVSVSKARAIIVLAS 469 (677)
Q Consensus 453 L~rA~I~~A~aVIIltd 469 (677)
+. ....+|.||-+..
T Consensus 125 ~~--~~~~~d~Vi~~~~ 139 (378)
T PLN00016 125 KV--AGAGFDVVYDNNG 139 (378)
T ss_pred hh--ccCCccEEEeCCC
Confidence 32 2346888887654
No 404
>PRK14982 acyl-ACP reductase; Provisional
Probab=46.88 E-value=68 Score=35.35 Aligned_cols=71 Identities=23% Similarity=0.305 Sum_probs=47.5
Q ss_pred ecCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 005788 381 EKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (677)
Q Consensus 381 ~knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~ 459 (677)
....++|+|. |..|..++++|...+ +...+++++++++..+.+..++ ..|+.. ++. ..+.
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~----gv~~lilv~R~~~rl~~La~el-----------~~~~i~---~l~-~~l~ 214 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKT----GVAELLLVARQQERLQELQAEL-----------GGGKIL---SLE-EALP 214 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhC----CCCEEEEEcCCHHHHHHHHHHh-----------ccccHH---hHH-HHHc
Confidence 3567999998 789999999997532 1246888888877766543321 123333 343 3356
Q ss_pred cccEEEEecCC
Q 005788 460 KARAIIVLASD 470 (677)
Q Consensus 460 ~A~aVIIltdd 470 (677)
+||.||.++..
T Consensus 215 ~aDiVv~~ts~ 225 (340)
T PRK14982 215 EADIVVWVASM 225 (340)
T ss_pred cCCEEEECCcC
Confidence 79999998864
No 405
>PLN02572 UDP-sulfoquinovose synthase
Probab=46.72 E-value=70 Score=36.24 Aligned_cols=83 Identities=11% Similarity=0.129 Sum_probs=50.5
Q ss_pred ecCeEEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCCh----HH---H---------HHHHHhhhcccCCccEEEE
Q 005788 381 EKNHILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDK----EE---M---------EMDIAKLEFDFMGTSVICR 443 (677)
Q Consensus 381 ~knHIII~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~----e~---~---------e~~l~~~~~~~~~~~V~~I 443 (677)
...+|+|.|.+ -.|..|+++|...+ +.|+++|+.. +. . .+.++... ...+.++.++
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~~v 118 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRG------YEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWK-EVSGKEIELY 118 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCC------CeEEEEeccccccccccccccccccccchHHHHHHHH-HhhCCcceEE
Confidence 34569999874 46889999998764 5677765321 00 0 00000000 0012357889
Q ss_pred EeCCCCHHHHhccCcc-cccEEEEecCC
Q 005788 444 SGSPLILADLKKVSVS-KARAIIVLASD 470 (677)
Q Consensus 444 ~Gd~~~~e~L~rA~I~-~A~aVIIltdd 470 (677)
.||..+.+.++++=-+ +.|.||-++..
T Consensus 119 ~~Dl~d~~~v~~~l~~~~~D~ViHlAa~ 146 (442)
T PLN02572 119 VGDICDFEFLSEAFKSFEPDAVVHFGEQ 146 (442)
T ss_pred ECCCCCHHHHHHHHHhCCCCEEEECCCc
Confidence 9999999888764222 57899888843
No 406
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=46.54 E-value=1.6e+02 Score=30.85 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=45.3
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~a 463 (677)
++.|+|+|..|..+++.|..... +-..+.++|.+++..++..+++ ++.. ..+.+.|. .++|.
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~---~~elv~v~d~~~~~a~~~a~~~-------~~~~----~~~~~ell----~~~Dv 64 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRI---NAELYAFYDRNLEKAENLASKT-------GAKA----CLSIDELV----EDVDL 64 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCC---CeEEEEEECCCHHHHHHHHHhc-------CCee----ECCHHHHh----cCCCE
Confidence 68999999999999998875320 1245668899988777654321 1111 13444443 57999
Q ss_pred EEEecC
Q 005788 464 IIVLAS 469 (677)
Q Consensus 464 VIIltd 469 (677)
|++.++
T Consensus 65 Vvi~a~ 70 (265)
T PRK13304 65 VVECAS 70 (265)
T ss_pred EEEcCC
Confidence 999985
No 407
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=46.47 E-value=68 Score=31.72 Aligned_cols=73 Identities=23% Similarity=0.193 Sum_probs=48.8
Q ss_pred EEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc-ccc
Q 005788 385 ILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS-KAR 462 (677)
Q Consensus 385 III~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~-~A~ 462 (677)
|+|+|.+. .|..++++|...+. .++.+.....+...... ..++.+..+|..+.+.++++--. +.|
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~-----~v~~~~~~~~~~~~~~~--------~~~~~~~~~dl~~~~~~~~~~~~~~~d 67 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH-----EVIVLSRSSNSESFEEK--------KLNVEFVIGDLTDKEQLEKLLEKANID 67 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT-----EEEEEESCSTGGHHHHH--------HTTEEEEESETTSHHHHHHHHHHHTES
T ss_pred EEEEccCCHHHHHHHHHHHHcCC-----ccccccccccccccccc--------cceEEEEEeeccccccccccccccCce
Confidence 68898655 68899999998752 33444444443322211 12678899999999988775322 468
Q ss_pred EEEEecCC
Q 005788 463 AIIVLASD 470 (677)
Q Consensus 463 aVIIltdd 470 (677)
.||-++..
T Consensus 68 ~vi~~a~~ 75 (236)
T PF01370_consen 68 VVIHLAAF 75 (236)
T ss_dssp EEEEEBSS
T ss_pred EEEEeecc
Confidence 99988865
No 408
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=46.25 E-value=39 Score=41.28 Aligned_cols=56 Identities=16% Similarity=0.334 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHhhhccCCC-CccCCCCCeEEeeeehhhhHHHHHHHHHHHHHHHHH
Q 005788 312 SSFAEALWLSWTFVADSGNH-ADRVGTGPRIVSVSISSGGMLIFAMMLGLVSDAISE 367 (677)
Q Consensus 312 ~s~~dAlw~t~vTiTTvGyg-~~p~t~~gRi~~v~lil~Gi~ifa~lig~it~~i~~ 367 (677)
.++..|+|..|..+..-.-- ..|.++.+|+.+.++.++++++++.-++-++.++..
T Consensus 608 FtigkaiwllwaLvFnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIq 664 (1258)
T KOG1053|consen 608 FTIGKAIWLLWALVFNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQ 664 (1258)
T ss_pred eehhhHHHHHHHHHhCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47899999998777643332 347888899999999999999988777777665433
No 409
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=45.92 E-value=3.4e+02 Score=28.90 Aligned_cols=71 Identities=14% Similarity=0.114 Sum_probs=48.1
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~ 462 (677)
.+|-++|+|+.+..++..|.+.+. -....|++.+++++..+....++ ++. + ..+.+ .-+++||
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~--~~~~~I~v~~~~~e~~~~l~~~~-------g~~-~---~~~~~----~~~~~ad 64 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGA--LPPEEIIVTNRSEEKRAALAAEY-------GVV-T---TTDNQ----EAVEEAD 64 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCC--CCcceEEEeCCCHHHHHHHHHHc-------CCc-c---cCcHH----HHHhhCC
Confidence 468999999999999999997641 01257899999988776544432 222 1 22222 2356789
Q ss_pred EEEEecCC
Q 005788 463 AIIVLASD 470 (677)
Q Consensus 463 aVIIltdd 470 (677)
.||+....
T Consensus 65 vv~LavKP 72 (266)
T COG0345 65 VVFLAVKP 72 (266)
T ss_pred EEEEEeCh
Confidence 99888864
No 410
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=45.87 E-value=37 Score=36.68 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=50.4
Q ss_pred EeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccEEEEe
Q 005788 388 LGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVL 467 (677)
Q Consensus 388 ~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~aVIIl 467 (677)
||.|..+..+++.+... ..|+-+|.|++.++...+.+.. ..++.+++||..+...+...++...|.|+..
T Consensus 28 lG~GGhS~~il~~~~~~-------g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 28 FGGGGHSRAILERLGPK-------GRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred cCChHHHHHHHHhCCCC-------CEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCccCEEEEC
Confidence 46665666666654211 3688999999888776543321 2479999999988766554477789999987
Q ss_pred cCC
Q 005788 468 ASD 470 (677)
Q Consensus 468 tdd 470 (677)
-+-
T Consensus 98 LGv 100 (296)
T PRK00050 98 LGV 100 (296)
T ss_pred CCc
Confidence 654
No 411
>PRK08655 prephenate dehydrogenase; Provisional
Probab=45.80 E-value=2.2e+02 Score=32.31 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=42.7
Q ss_pred eEEEEe-ccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 005788 384 HILILG-WSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (677)
Q Consensus 384 HIII~G-~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~ 462 (677)
+|.|+| .|..|..+++.|...+ +.|++.+++++..++...+. ++.+ ..+.+ . .+++||
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G------~~V~v~~r~~~~~~~~a~~~-------gv~~----~~~~~---e-~~~~aD 60 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKG------FEVIVTGRDPKKGKEVAKEL-------GVEY----ANDNI---D-AAKDAD 60 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCC------CEEEEEECChHHHHHHHHHc-------CCee----ccCHH---H-HhccCC
Confidence 588997 7999999999998754 57888898877654443321 2211 11221 1 145788
Q ss_pred EEEEecC
Q 005788 463 AIIVLAS 469 (677)
Q Consensus 463 aVIIltd 469 (677)
.||+.++
T Consensus 61 vVIlavp 67 (437)
T PRK08655 61 IVIISVP 67 (437)
T ss_pred EEEEecC
Confidence 8888886
No 412
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=45.72 E-value=65 Score=31.96 Aligned_cols=78 Identities=19% Similarity=0.147 Sum_probs=46.7
Q ss_pred EEEEecc-chHHHHHHHHHHhcccCCCCeEEEEEcCCh-HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--c--
Q 005788 385 ILILGWS-DKLGSLLKQLAVANKSIGGGVIVVLAERDK-EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--V-- 458 (677)
Q Consensus 385 III~G~g-~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~-e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--I-- 458 (677)
++|.|.+ ..|..++++|.+.+ ..|++++++. +..+...+.... .+..+.++.+|.++++.++++= +
T Consensus 1 vlItG~~g~iG~~la~~l~~~G------~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEG------AKVIITYRSSEEGAEEVVEELKA--YGVKALGVVCDVSDREDVKAVVEEIEE 72 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCC------CEEEEEeCCchhHHHHHHHHHHh--cCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4677764 46889999998653 4567765543 333333222210 1234778899999998876642 1
Q ss_pred --ccccEEEEecCC
Q 005788 459 --SKARAIIVLASD 470 (677)
Q Consensus 459 --~~A~aVIIltdd 470 (677)
...|.+|-.+..
T Consensus 73 ~~~~id~vi~~ag~ 86 (239)
T TIGR01830 73 ELGPIDILVNNAGI 86 (239)
T ss_pred HhCCCCEEEECCCC
Confidence 235777766543
No 413
>PRK06523 short chain dehydrogenase; Provisional
Probab=45.55 E-value=50 Score=33.55 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=48.6
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA---- 456 (677)
...++|.|.+. .|..++++|...+ ..|++++++++.. . ..++.++.+|..+.+.++++
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G------~~v~~~~r~~~~~---~--------~~~~~~~~~D~~~~~~~~~~~~~~ 71 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAG------ARVVTTARSRPDD---L--------PEGVEFVAADLTTAEGCAAVARAV 71 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCC------CEEEEEeCChhhh---c--------CCceeEEecCCCCHHHHHHHHHHH
Confidence 46788888754 6889999998754 5788888775431 0 23567889999998876542
Q ss_pred --CcccccEEEEecC
Q 005788 457 --SVSKARAIIVLAS 469 (677)
Q Consensus 457 --~I~~A~aVIIltd 469 (677)
.....|.+|-.+.
T Consensus 72 ~~~~~~id~vi~~ag 86 (260)
T PRK06523 72 LERLGGVDILVHVLG 86 (260)
T ss_pred HHHcCCCCEEEECCc
Confidence 1134577776664
No 414
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=45.15 E-value=1.3e+02 Score=30.56 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=51.6
Q ss_pred EEEEe-ccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 005788 385 ILILG-WSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (677)
Q Consensus 385 III~G-~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~a 463 (677)
|-|+| -|+.|..|++|.... ||.|+-+-+++.++.. ..++..+++|..+.+.+ ...+..-|+
T Consensus 3 IaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~~----------~~~~~i~q~Difd~~~~-a~~l~g~Da 65 (211)
T COG2910 3 IAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLAA----------RQGVTILQKDIFDLTSL-ASDLAGHDA 65 (211)
T ss_pred EEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhccc----------cccceeecccccChhhh-HhhhcCCce
Confidence 44444 567799999998865 4889999899877543 13677899999999888 456677788
Q ss_pred EEEecCC
Q 005788 464 IIVLASD 470 (677)
Q Consensus 464 VIIltdd 470 (677)
||..-.-
T Consensus 66 VIsA~~~ 72 (211)
T COG2910 66 VISAFGA 72 (211)
T ss_pred EEEeccC
Confidence 8876654
No 415
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.02 E-value=66 Score=34.53 Aligned_cols=83 Identities=19% Similarity=0.065 Sum_probs=50.2
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc----
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV---- 456 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA---- 456 (677)
..-++|-|.+. .|..++.+|...+ ..++++-...++++...++........++.++++|-++.+..+++
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G------~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~ 85 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRG------AKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWA 85 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCC------CceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHH
Confidence 34456668876 5889999999875 334444333333333322221111122699999999999998865
Q ss_pred --CcccccEEEEecCC
Q 005788 457 --SVSKARAIIVLASD 470 (677)
Q Consensus 457 --~I~~A~aVIIltdd 470 (677)
...+.|.+|--+.-
T Consensus 86 ~~~fg~vDvLVNNAG~ 101 (282)
T KOG1205|consen 86 IRHFGRVDVLVNNAGI 101 (282)
T ss_pred HHhcCCCCEEEecCcc
Confidence 55667777765543
No 416
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.76 E-value=60 Score=33.18 Aligned_cols=80 Identities=16% Similarity=0.079 Sum_probs=44.8
Q ss_pred cCeEEEEecc---chHHHHHHHHHHhcccCCCCeEEEEEc-----C------ChHHHHHHHHhhhcccCCccEEEEEeCC
Q 005788 382 KNHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAE-----R------DKEEMEMDIAKLEFDFMGTSVICRSGSP 447 (677)
Q Consensus 382 knHIII~G~g---~~g~~Ll~eL~~~~~s~~~~~iVVLiD-----~------d~e~~e~~l~~~~~~~~~~~V~~I~Gd~ 447 (677)
..+++|.|.+ ..|..++++|...+ ..|++.. + +.+..++..++.. ..+.++.++..|.
T Consensus 6 ~k~vlVtGas~~~giG~~~a~~l~~~G------~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~D~ 77 (256)
T PRK12859 6 NKVAVVTGVSRLDGIGAAICKELAEAG------ADIFFTYWTAYDKEMPWGVDQDEQIQLQEELL--KNGVKVSSMELDL 77 (256)
T ss_pred CcEEEEECCCCCCChHHHHHHHHHHCC------CeEEEEecccccccccccccHHHHHHHHHHHH--hcCCeEEEEEcCC
Confidence 4678889986 47999999998764 4566653 1 1222222111111 1134566777887
Q ss_pred CCHHHHhccC------cccccEEEEecC
Q 005788 448 LILADLKKVS------VSKARAIIVLAS 469 (677)
Q Consensus 448 ~~~e~L~rA~------I~~A~aVIIltd 469 (677)
++.+.++++- ...-|.+|-.+.
T Consensus 78 ~~~~~i~~~~~~~~~~~g~id~li~~ag 105 (256)
T PRK12859 78 TQNDAPKELLNKVTEQLGYPHILVNNAA 105 (256)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence 7777665431 112456665553
No 417
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=44.69 E-value=55 Score=30.80 Aligned_cols=74 Identities=22% Similarity=0.156 Sum_probs=44.8
Q ss_pred CeEEEEecc--chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc-c
Q 005788 383 NHILILGWS--DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-S 459 (677)
Q Consensus 383 nHIII~G~g--~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-~ 459 (677)
.+|+=+|+| ..+..+++++.. +..++-+|.+++.++.+...... ..-.++.+++||..+ |.+. + +
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~-------~~~i~gvD~s~~~i~~a~~~~~~-~~~~ni~~~~~d~~~---l~~~-~~~ 72 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNP-------GAKIIGVDISEEMIEYAKKRAKE-LGLDNIEFIQGDIED---LPQE-LEE 72 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTT-------TSEEEEEESSHHHHHHHHHHHHH-TTSTTEEEEESBTTC---GCGC-SST
T ss_pred CEEEEecCcCcHHHHHHHHhcCC-------CCEEEEEECcHHHHHHhhccccc-ccccccceEEeehhc---cccc-cCC
Confidence 445555555 344444443221 24699999999887776553211 111268999999887 3333 3 7
Q ss_pred cccEEEEec
Q 005788 460 KARAIIVLA 468 (677)
Q Consensus 460 ~A~aVIIlt 468 (677)
+.|.|+...
T Consensus 73 ~~D~I~~~~ 81 (152)
T PF13847_consen 73 KFDIIISNG 81 (152)
T ss_dssp TEEEEEEES
T ss_pred CeeEEEEcC
Confidence 899998875
No 418
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=44.59 E-value=38 Score=35.85 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=33.7
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHH
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l 428 (677)
.+|-|+|.|..|..++..|...+ +.|++.|.+++.++...
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G------~~V~l~d~~~~~l~~~~ 43 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG------YDVTIVDVSEEILKNAM 43 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC------CeEEEEeCCHHHHHHHH
Confidence 57999999999999999998764 68999999998877543
No 419
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=44.56 E-value=92 Score=33.52 Aligned_cols=33 Identities=30% Similarity=0.223 Sum_probs=28.4
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
.||.|+|.|..|..++..|...+ +.|.++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G------~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAG------ADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcC------CcEEEEecHH
Confidence 57999999999999999998764 6788888765
No 420
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=44.34 E-value=1e+02 Score=33.65 Aligned_cols=38 Identities=26% Similarity=0.145 Sum_probs=26.9
Q ss_pred eEEEEec-cchHHHHHHHHHHhcccC-CCCeEEEEEcCCh
Q 005788 384 HILILGW-SDKLGSLLKQLAVANKSI-GGGVIVVLAERDK 421 (677)
Q Consensus 384 HIII~G~-g~~g~~Ll~eL~~~~~s~-~~~~iVVLiD~d~ 421 (677)
+|.|+|. |..|..++..|...+--. .....++|+|.++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPP 41 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCC
Confidence 6899999 999999998887533110 0124688998876
No 421
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.12 E-value=76 Score=33.05 Aligned_cols=74 Identities=18% Similarity=0.134 Sum_probs=45.9
Q ss_pred CeEEEEecc---chHHHHHHHHHHhcccCCCCeEEEEEcCCh---HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 005788 383 NHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAERDK---EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (677)
Q Consensus 383 nHIII~G~g---~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~---e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA 456 (677)
..++|.|.+ ..|..++++|..++ ..|+++.++. +.++++.+++ + .+.++..|.++++.++++
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G------~~V~l~~r~~~~~~~~~~l~~~~-----~-~~~~~~~Dl~~~~~v~~~ 78 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAG------AELAFTYQGDALKKRVEPLAAEL-----G-AFVAGHCDVTDEASIDAV 78 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCC------CEEEEEcCchHHHHHHHHHHHhc-----C-CceEEecCCCCHHHHHHH
Confidence 457788974 57999999998764 5677776543 3333332221 1 245678898888877653
Q ss_pred ------CcccccEEEEec
Q 005788 457 ------SVSKARAIIVLA 468 (677)
Q Consensus 457 ------~I~~A~aVIIlt 468 (677)
...+-|.+|-.+
T Consensus 79 ~~~~~~~~g~iD~lv~nA 96 (272)
T PRK08159 79 FETLEKKWGKLDFVVHAI 96 (272)
T ss_pred HHHHHHhcCCCcEEEECC
Confidence 122456666554
No 422
>PRK08703 short chain dehydrogenase; Provisional
Probab=44.07 E-value=72 Score=31.99 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=31.1
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHH
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~ 429 (677)
.+++|.|.+. .|..++++|.+.+ ..|++++++++..++..+
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g------~~V~~~~r~~~~~~~~~~ 48 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAG------ATVILVARHQKKLEKVYD 48 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcC------CEEEEEeCChHHHHHHHH
Confidence 5788998755 6889999998653 578888888876665443
No 423
>PRK05086 malate dehydrogenase; Provisional
Probab=43.96 E-value=1.9e+02 Score=31.22 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=58.8
Q ss_pred CeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEe-CCCC-HHHHhccCcc
Q 005788 383 NHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSG-SPLI-LADLKKVSVS 459 (677)
Q Consensus 383 nHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~G-d~~~-~e~L~rA~I~ 459 (677)
.+|+|+|. |..|..++..|.... +..+.++++|.++......+ ++. +. +. ...+.| +..+ .+++ .
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~~~~~g~al-Dl~-~~-~~-~~~i~~~~~~d~~~~l-----~ 68 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIAPVTPGVAV-DLS-HI-PT-AVKIKGFSGEDPTPAL-----E 68 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecCCCCcceeh-hhh-cC-CC-CceEEEeCCCCHHHHc-----C
Confidence 47999999 889999998875421 12467888887643210001 110 00 11 123455 2223 2333 5
Q ss_pred cccEEEEecCCC-CCc--cchH--HHHHH----HHHHhhhcCCCCceEEEEeCCCCC
Q 005788 460 KARAIIVLASDE-NAD--QSDA--RALRV----VLSLTGVKEGLRGHVVVEMSDLDN 507 (677)
Q Consensus 460 ~A~aVIIltdd~-~~~--~sDa--~NI~i----~Lsar~l~p~l~~~IIArv~d~e~ 507 (677)
.||.||+++... .+. ..|. .|..+ +-.++++++ + .+|.-+.||-+
T Consensus 69 ~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~--~-~ivivvsNP~D 122 (312)
T PRK05086 69 GADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCP--K-ACIGIITNPVN 122 (312)
T ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC--C-eEEEEccCchH
Confidence 699999998762 221 1221 13222 233444554 2 57778888874
No 424
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=43.85 E-value=78 Score=31.64 Aligned_cols=64 Identities=11% Similarity=0.083 Sum_probs=39.5
Q ss_pred EEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEc-CChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 005788 385 ILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAE-RDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (677)
Q Consensus 385 III~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD-~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA 456 (677)
++|.|.+. .|..++++|.+.+ ..|+++. .+.+..+...+++.. .+.++.++.+|..+.+.++++
T Consensus 1 vlItGas~giG~~~a~~l~~~G------~~v~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~ 66 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADG------FEICVHYHSGRSDAESVVSAIQA--QGGNARLLQFDVADRVACRTL 66 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCC------CEEEEEeCCCHHHHHHHHHHHHH--cCCeEEEEEccCCCHHHHHHH
Confidence 46777655 6889999998654 3455554 444444444332211 134678889999988876553
No 425
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=43.82 E-value=2.3e+02 Score=31.71 Aligned_cols=58 Identities=26% Similarity=0.297 Sum_probs=32.7
Q ss_pred CeEEEEEcCC--hHHHHHHHHhhhcccCCccEEEEEe--CCCCHHHHhc---------cCcccccEEEEecC
Q 005788 411 GVIVVLAERD--KEEMEMDIAKLEFDFMGTSVICRSG--SPLILADLKK---------VSVSKARAIIVLAS 469 (677)
Q Consensus 411 ~~iVVLiD~d--~e~~e~~l~~~~~~~~~~~V~~I~G--d~~~~e~L~r---------A~I~~A~aVIIltd 469 (677)
...|.+.|-+ -+.+-+ +++...+|..+||.++.| |-.++..... ..+++|+.+|+.-.
T Consensus 356 HMNVLLAEA~VpYd~v~e-mddIN~dF~~tDVvlVIGANDvvNPAA~~D~SPI~GMPiLeV~KAk~viv~KR 426 (463)
T COG1282 356 HMNVLLAEAKVPYDIVLE-MDEINDDFADTDVVLVIGANDVVNPAAQDDNSPIAGMPVLEVWKAKTVIVFKR 426 (463)
T ss_pred chhhhhhhccCCHHHHhh-HHhhcchhccccEEEEEccCCCCChhhccCCCCcCCCceeeeeccceEEEEec
Confidence 4567777654 222211 233445666788888888 4555555443 23567777777653
No 426
>PRK07340 ornithine cyclodeaminase; Validated
Probab=43.60 E-value=1e+02 Score=33.19 Aligned_cols=75 Identities=12% Similarity=0.070 Sum_probs=50.7
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
...++.|+|.|..+...++.+.... +...|.+.+++++..+...+++.. .++.+. ..+.+.. +.+
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~----~~~~v~v~~r~~~~a~~~a~~~~~----~~~~~~---~~~~~~a----v~~ 188 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGL----PVRRVWVRGRTAASAAAFCAHARA----LGPTAE---PLDGEAI----PEA 188 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhC----CCCEEEEEcCCHHHHHHHHHHHHh----cCCeeE---ECCHHHH----hhc
Confidence 3468999999999999999987532 124688899999888877665421 112222 1222221 359
Q ss_pred ccEEEEecCC
Q 005788 461 ARAIIVLASD 470 (677)
Q Consensus 461 A~aVIIltdd 470 (677)
||.||..|+.
T Consensus 189 aDiVitaT~s 198 (304)
T PRK07340 189 VDLVVTATTS 198 (304)
T ss_pred CCEEEEccCC
Confidence 9999999975
No 427
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=43.42 E-value=43 Score=35.68 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=34.3
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHH
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l 428 (677)
.+|-|+|.|..|..++..|...+ +.|++.|.+++.++...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G------~~V~l~d~~~~~~~~~~ 45 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG------VDVLVFETTEELATAGR 45 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC------CEEEEEECCHHHHHHHH
Confidence 48999999999999999988764 89999999998877644
No 428
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=43.25 E-value=1.5e+02 Score=31.98 Aligned_cols=74 Identities=19% Similarity=0.154 Sum_probs=46.5
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc--ccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF--DFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~--~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
+|.|+|.|..|..++..|...+ ....++++|.+++..+....++.. .+. .... +.+ .+.++ +.+|
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g----~~~ev~l~D~~~~~~~g~a~dl~~~~~~~-~~~~-i~~--~d~~~-----l~~a 68 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRG----LASEIVLVDINKAKAEGEAMDLAHGTPFV-KPVR-IYA--GDYAD-----CKGA 68 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcC----CCCEEEEEECCchhhhhHHHHHHcccccc-CCeE-Eee--CCHHH-----hCCC
Confidence 5899999999999998887643 125799999987655532222211 111 1122 222 23332 6789
Q ss_pred cEEEEecCC
Q 005788 462 RAIIVLASD 470 (677)
Q Consensus 462 ~aVIIltdd 470 (677)
|.+|+....
T Consensus 69 DiViita~~ 77 (308)
T cd05292 69 DVVVITAGA 77 (308)
T ss_pred CEEEEccCC
Confidence 999998876
No 429
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=43.18 E-value=1.5e+02 Score=25.30 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=33.8
Q ss_pred HHHhccCcccccEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCC--HHHHHHcCCC
Q 005788 451 ADLKKVSVSKARAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDN--EPLVKLVGGE 517 (677)
Q Consensus 451 e~L~rA~I~~A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~--~~~l~~aGad 517 (677)
+.+....-...+.+++-.... |..-+..+-.+++.++ .+++|+-..+.+. ...+..+|++
T Consensus 34 ~~~~~~~~~~~d~iiid~~~~-----~~~~~~~~~~i~~~~~--~~~ii~~t~~~~~~~~~~~~~~g~~ 95 (112)
T PF00072_consen 34 EALELLKKHPPDLIIIDLELP-----DGDGLELLEQIRQINP--SIPIIVVTDEDDSDEVQEALRAGAD 95 (112)
T ss_dssp HHHHHHHHSTESEEEEESSSS-----SSBHHHHHHHHHHHTT--TSEEEEEESSTSHHHHHHHHHTTES
T ss_pred HHHHHhcccCceEEEEEeeec-----cccccccccccccccc--cccEEEecCCCCHHHHHHHHHCCCC
Confidence 334444455577777765431 2223344455566665 5678877765553 3344568887
No 430
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=43.15 E-value=1.3e+02 Score=32.74 Aligned_cols=135 Identities=14% Similarity=0.142 Sum_probs=72.4
Q ss_pred EeccchHHHHHHHHHHhcccCCCCeEEEEEcC---ChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccEE
Q 005788 388 LGWSDKLGSLLKQLAVANKSIGGGVIVVLAER---DKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAI 464 (677)
Q Consensus 388 ~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~---d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~aV 464 (677)
+|.+......++.+.+++ .+++.++- +.+...+.++.+...+ .++.++.|+..+.+..+++--..||.|
T Consensus 89 ~~~~~~~~~~~~~l~eag------v~~I~vd~~~G~~~~~~~~i~~ik~~~--p~v~Vi~G~v~t~~~A~~l~~aGaD~I 160 (325)
T cd00381 89 VGTREDDKERAEALVEAG------VDVIVIDSAHGHSVYVIEMIKFIKKKY--PNVDVIAGNVVTAEAARDLIDAGADGV 160 (325)
T ss_pred cCCChhHHHHHHHHHhcC------CCEEEEECCCCCcHHHHHHHHHHHHHC--CCceEEECCCCCHHHHHHHHhcCCCEE
Confidence 444445567777777764 55666553 2333333344332111 146667799998888777666678888
Q ss_pred EEecCC-C---C-----CccchHHHHHHHHHHhhhcCCCCceEEE--EeCCCCCHHHHHHcCCCeeEEEechHHHHHHHH
Q 005788 465 IVLASD-E---N-----ADQSDARALRVVLSLTGVKEGLRGHVVV--EMSDLDNEPLVKLVGGELIETVVAHDVIGRLMI 533 (677)
Q Consensus 465 IIltdd-~---~-----~~~sDa~NI~i~Lsar~l~p~l~~~IIA--rv~d~e~~~~l~~aGad~VevVv~~el~a~lLa 533 (677)
++-... . . ....+...+.-+ .+..+..+.+||+ -+.++.....+..+|++.| .++.+++
T Consensus 161 ~vg~g~G~~~~t~~~~g~g~p~~~~i~~v---~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~V-------miGt~fa 230 (325)
T cd00381 161 KVGIGPGSICTTRIVTGVGVPQATAVADV---AAAARDYGVPVIADGGIRTSGDIVKALAAGADAV-------MLGSLLA 230 (325)
T ss_pred EECCCCCcCcccceeCCCCCCHHHHHHHH---HHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEE-------Eecchhc
Confidence 862111 0 0 001122222222 2221112457888 6778777777777999954 2345555
Q ss_pred HHhcCCc
Q 005788 534 QCALQPG 540 (677)
Q Consensus 534 q~a~~Pg 540 (677)
.+-..|+
T Consensus 231 ~t~Es~g 237 (325)
T cd00381 231 GTDESPG 237 (325)
T ss_pred ccccCCC
Confidence 5544443
No 431
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=43.11 E-value=1.9e+02 Score=30.06 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=29.4
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
.+-+|+|+|.|..|..+++.|...+- ..++++|.|.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gv-----g~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGV-----GTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCE
Confidence 57899999999999999999998753 3577777664
No 432
>PRK13243 glyoxylate reductase; Reviewed
Probab=42.81 E-value=60 Score=35.46 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=29.4
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChH
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE 422 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e 422 (677)
...++.|+|+|..|..+++.|...+ ..|+..|+.++
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G------~~V~~~d~~~~ 184 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFG------MRILYYSRTRK 184 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC------CEEEEECCCCC
Confidence 4578999999999999999998654 67888887654
No 433
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.78 E-value=1.1e+02 Score=30.80 Aligned_cols=81 Identities=15% Similarity=0.113 Sum_probs=50.3
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLi-D~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-- 457 (677)
...++|.|.+. .|..++++|...+ ..++++ ..+.+..+........ .+.++.++.+|.++++.+.++-
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g------~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~ 77 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEG------SLVVVNAKKRAEEMNETLKMVKE--NGGEGIGVLADVSTREGCETLAKA 77 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCC------CEEEEEeCCChHHHHHHHHHHHH--cCCeeEEEEeccCCHHHHHHHHHH
Confidence 35788888765 6889999998654 345444 3444444433322110 1235677889999988776541
Q ss_pred ----cccccEEEEecCC
Q 005788 458 ----VSKARAIIVLASD 470 (677)
Q Consensus 458 ----I~~A~aVIIltdd 470 (677)
....|.+|-.+..
T Consensus 78 ~~~~~~~~d~vi~~ag~ 94 (252)
T PRK06077 78 TIDRYGVADILVNNAGL 94 (252)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 1357888888753
No 434
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=42.53 E-value=62 Score=33.37 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=37.8
Q ss_pred cCeEEEEec---cchHHHHHHHHHHhcccCCCCeEEEEEcC---ChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 005788 382 KNHILILGW---SDKLGSLLKQLAVANKSIGGGVIVVLAER---DKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (677)
Q Consensus 382 knHIII~G~---g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~---d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~r 455 (677)
..+++|.|. +..|..++++|..++ ..|++++. +.+.++++.++. + ...++..|.++++.+++
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~G------~~v~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~Dv~d~~~v~~ 73 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKREG------AELAFTYVGDRFKDRITEFAAEF-----G-SDLVFPCDVASDEQIDA 73 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHCC------CeEEEEccchHHHHHHHHHHHhc-----C-CcceeeccCCCHHHHHH
Confidence 457888995 346899999998764 56777643 334444332211 1 12356677777777654
No 435
>PTZ00117 malate dehydrogenase; Provisional
Probab=42.04 E-value=81 Score=34.20 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=45.5
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhh-h-cccCCccEEEEEeCCCCHHHHhccCc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKL-E-FDFMGTSVICRSGSPLILADLKKVSV 458 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~-~-~~~~~~~V~~I~Gd~~~~e~L~rA~I 458 (677)
.+.+|.|+|.|..|..++..+...+ -..++|+|.+++..+...-++ + ....+... .+.+. .+.++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~-----~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~-~i~~~-~d~~~-----l 71 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKN-----LGDVVLYDVIKGVPQGKALDLKHFSTLVGSNI-NILGT-NNYED-----I 71 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCC-----CCeEEEEECCCccchhHHHHHhhhccccCCCe-EEEeC-CCHHH-----h
Confidence 4579999999999999887766543 146999998875433211111 1 11111111 23332 23333 4
Q ss_pred ccccEEEEecCC
Q 005788 459 SKARAIIVLASD 470 (677)
Q Consensus 459 ~~A~aVIIltdd 470 (677)
..||.||+....
T Consensus 72 ~~ADiVVitag~ 83 (319)
T PTZ00117 72 KDSDVVVITAGV 83 (319)
T ss_pred CCCCEEEECCCC
Confidence 678999998844
No 436
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=41.97 E-value=27 Score=38.51 Aligned_cols=58 Identities=26% Similarity=0.186 Sum_probs=41.0
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I 458 (677)
-.|+|+|.|..|..++-.|...+ ..|+|+|+.++.... .. ..+.=.+...+.|++.|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G------~~V~l~E~~~~~~~~-----------~~-r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAG------LDVTLLERAPRELLE-----------RG-RGIALSPNALRALERLGL 60 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC------CcEEEEccCcccccc-----------Cc-eeeeecHhHHHHHHHcCC
Confidence 46999999999999999998764 899999987333221 11 222234456677888887
No 437
>PLN00015 protochlorophyllide reductase
Probab=41.82 E-value=74 Score=33.77 Aligned_cols=77 Identities=21% Similarity=0.066 Sum_probs=50.6
Q ss_pred EEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC------c
Q 005788 386 LILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS------V 458 (677)
Q Consensus 386 II~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~------I 458 (677)
||.|.+. .|..++++|...+. ..|+++.++.+..++..+++.. .+.++.++..|.++.+.++++- .
T Consensus 1 lITGas~GIG~aia~~l~~~G~-----~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 73 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGK-----WHVVMACRDFLKAERAAKSAGM--PKDSYTVMHLDLASLDSVRQFVDNFRRSG 73 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCC-----CEEEEEeCCHHHHHHHHHHhcC--CCCeEEEEEecCCCHHHHHHHHHHHHhcC
Confidence 4777765 58889999986531 4677788887766655544321 1235778899999998876542 1
Q ss_pred ccccEEEEecC
Q 005788 459 SKARAIIVLAS 469 (677)
Q Consensus 459 ~~A~aVIIltd 469 (677)
..-|.+|..+.
T Consensus 74 ~~iD~lInnAG 84 (308)
T PLN00015 74 RPLDVLVCNAA 84 (308)
T ss_pred CCCCEEEECCC
Confidence 24577776654
No 438
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.66 E-value=45 Score=35.28 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=33.8
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHH
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~ 429 (677)
.+|.|+|.|..|..++..|...+ +.|++.|.+++.+++..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G------~~V~l~d~~~~~l~~~~~ 44 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG------FDVTIYDISDEALEKAKE 44 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC------CeEEEEeCCHHHHHHHHH
Confidence 47999999999999999887653 789999999887766543
No 439
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=41.58 E-value=77 Score=36.29 Aligned_cols=32 Identities=19% Similarity=0.094 Sum_probs=28.8
Q ss_pred CCCceEEEEccccCHHHHHHHHHhhcCCccEEEEE
Q 005788 640 KYPEKILFCGWRRDIDDMIMVIFLQLCLLSLVHLH 674 (677)
Q Consensus 640 ~~~~rVLI~Gwgr~~~~~i~~Ld~~~~~~~~~~~~ 674 (677)
+-|++++|+|+|-++-+++..+.+ -|++|||.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~---LG~~VTii 202 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAA---LGSKVTVV 202 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH---cCCcEEEE
Confidence 569999999999999999999985 59999986
No 440
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=41.58 E-value=1.1e+02 Score=33.54 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=29.2
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHH
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEE 423 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~ 423 (677)
..++-|+|.|..|..+++.|... +..|+..|.+++.
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~ 181 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNK 181 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhH
Confidence 44799999999999999999765 3788888877643
No 441
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=41.47 E-value=1.6e+02 Score=34.31 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=34.2
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHH
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~ 429 (677)
..+++|+|.|..+..++..|...+ ..|++++++.++.+.+.+
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G------~~V~i~nR~~e~a~~la~ 420 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKG------ARVVIANRTYERAKELAD 420 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC------CEEEEEcCCHHHHHHHHH
Confidence 458999999999999999998764 468888998887776654
No 442
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=41.46 E-value=2.2e+02 Score=32.72 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=48.0
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~a 463 (677)
+|-|+|.|..|..+++.|...+ +.|++.+++++..+.+.+.... +.++ .+ ..+.+++.+ .++++|.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G------~~V~v~drt~~~~~~l~~~~~~---g~~~---~~-~~s~~e~v~-~l~~~dv 66 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG------FTVSVYNRTPEKTDEFLAEHAK---GKKI---VG-AYSIEEFVQ-SLERPRK 66 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC------CeEEEEeCCHHHHHHHHhhccC---CCCc---ee-cCCHHHHHh-hcCCCCE
Confidence 3678999999999999998764 7899999999888776542100 1011 11 223444432 2457888
Q ss_pred EEEecCC
Q 005788 464 IIVLASD 470 (677)
Q Consensus 464 VIIltdd 470 (677)
||++..+
T Consensus 67 Iil~v~~ 73 (467)
T TIGR00873 67 IMLMVKA 73 (467)
T ss_pred EEEECCC
Confidence 8887753
No 443
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=41.34 E-value=2e+02 Score=30.59 Aligned_cols=74 Identities=20% Similarity=0.218 Sum_probs=46.6
Q ss_pred cCeEEEEeccchHH-HHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 382 KNHILILGWSDKLG-SLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 382 knHIII~G~g~~g~-~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
.-++-|+|.|..+. ..+..+..... .-..+-++|.+++..+...+++. +. =...+.+.|.+.. +
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~---~~~~vav~d~~~~~a~~~a~~~~-------~~---~~~~~~~~ll~~~--~ 67 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGG---GLELVAVVDRDPERAEAFAEEFG-------IA---KAYTDLEELLADP--D 67 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCC---ceEEEEEecCCHHHHHHHHHHcC-------CC---cccCCHHHHhcCC--C
Confidence 34788999986554 46666655320 01466778999998887766432 11 1234556665543 4
Q ss_pred ccEEEEecCC
Q 005788 461 ARAIIVLASD 470 (677)
Q Consensus 461 A~aVIIltdd 470 (677)
-|+|+|.+++
T Consensus 68 iD~V~Iatp~ 77 (342)
T COG0673 68 IDAVYIATPN 77 (342)
T ss_pred CCEEEEcCCC
Confidence 8999999975
No 444
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=41.32 E-value=73 Score=32.07 Aligned_cols=72 Identities=8% Similarity=-0.056 Sum_probs=49.6
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC---
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS--- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~--- 457 (677)
...++|.|.+. .|..++++|...+ ..|++++++. .+. .+.++.++.+|..+.+.++++-
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G------~~v~~~~~~~--~~~---------~~~~~~~~~~D~~~~~~~~~~~~~~ 70 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAG------AKVIGFDQAF--LTQ---------EDYPFATFVLDVSDAAAVAQVCQRL 70 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC------CEEEEEecch--hhh---------cCCceEEEEecCCCHHHHHHHHHHH
Confidence 35688888765 6889999998764 6788887765 111 1346778999999998887641
Q ss_pred ---cccccEEEEecCC
Q 005788 458 ---VSKARAIIVLASD 470 (677)
Q Consensus 458 ---I~~A~aVIIltdd 470 (677)
..+.|.+|-.+..
T Consensus 71 ~~~~~~id~vi~~ag~ 86 (252)
T PRK08220 71 LAETGPLDVLVNAAGI 86 (252)
T ss_pred HHHcCCCCEEEECCCc
Confidence 1235777776543
No 445
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.29 E-value=86 Score=32.62 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=38.3
Q ss_pred cCeEEEEecc---chHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhc
Q 005788 382 KNHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKK 455 (677)
Q Consensus 382 knHIII~G~g---~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~r 455 (677)
...+||.|.+ ..|..++++|..++ ..|++++++.+..+. .++..... +. ..++..|.++.+..++
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~G------a~V~~~~r~~~~~~~-~~~~~~~~-g~-~~~~~~Dv~d~~~v~~ 74 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQG------AELAFTYQGEALGKR-VKPLAESL-GS-DFVLPCDVEDIASVDA 74 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCC------CEEEEecCchHHHHH-HHHHHHhc-CC-ceEEeCCCCCHHHHHH
Confidence 3568888987 47999999998764 567787766432221 11111000 11 2356677777666543
No 446
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=41.29 E-value=1e+02 Score=31.30 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=47.1
Q ss_pred cCeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChH-HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 005788 382 KNHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (677)
Q Consensus 382 knHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e-~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-- 457 (677)
...++|.|.+. .|..++++|.+.+ ..|++++.... +..+.+++ .+.++.++..|.++.+.++++=
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~G------~~vv~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~ 78 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEAG------CDIVGINIVEPTETIEQVTA-----LGRRFLSLTADLRKIDGIPALLER 78 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC------CEEEEecCcchHHHHHHHHh-----cCCeEEEEECCCCCHHHHHHHHHH
Confidence 35788888775 6889999998764 56777665431 22122221 1345778889998887766531
Q ss_pred ----cccccEEEEecC
Q 005788 458 ----VSKARAIIVLAS 469 (677)
Q Consensus 458 ----I~~A~aVIIltd 469 (677)
..+-|.+|-.+.
T Consensus 79 ~~~~~~~~D~li~~Ag 94 (253)
T PRK08993 79 AVAEFGHIDILVNNAG 94 (253)
T ss_pred HHHHhCCCCEEEECCC
Confidence 124566665553
No 447
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.23 E-value=75 Score=36.48 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=29.9
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHH
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEME 425 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e 425 (677)
..++++|+|.|..|...++-|... |..|++.|.+++..+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~~~~~~ 49 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRF------GARPTVCDDDPDALR 49 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHH
Confidence 457899999999999999766654 367888997665443
No 448
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=41.23 E-value=2.9e+02 Score=28.96 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=43.6
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChH-HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e-~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
.+|.|+|.|..|..+++.|...+. .....|++.+++++ ..+.+..+ .++. +. .+...+ +++|
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~--~~~~~v~v~~r~~~~~~~~l~~~-------~g~~-~~---~~~~e~----~~~a 66 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANV--VKGEQITVSNRSNETRLQELHQK-------YGVK-GT---HNKKEL----LTDA 66 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCC--CCcceEEEECCCCHHHHHHHHHh-------cCce-Ee---CCHHHH----HhcC
Confidence 479999999999999999986531 11256778887653 44443321 1222 11 122221 4578
Q ss_pred cEEEEecCC
Q 005788 462 RAIIVLASD 470 (677)
Q Consensus 462 ~aVIIltdd 470 (677)
|.||+...+
T Consensus 67 DvVilav~p 75 (279)
T PRK07679 67 NILFLAMKP 75 (279)
T ss_pred CEEEEEeCH
Confidence 999998863
No 449
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=41.15 E-value=50 Score=35.93 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=28.5
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHH
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEE 423 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~ 423 (677)
+|+|+|.|..|.++++.|...+- ..+.++|.|.-+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-----g~ItIvD~D~Ve 35 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-----GEIHIIDLDTID 35 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-----CeEEEEcCCCcc
Confidence 58999999999999999998763 467788877543
No 450
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=41.13 E-value=74 Score=36.58 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=47.2
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..+++|+|.|..|..++..|...+ ..+++.+++.+..+...+... +.....+++.. +.++
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G------~~V~i~~R~~~~~~~la~~~~------------~~~~~~~~~~~--l~~~ 391 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAG------AELLIFNRTKAHAEALASRCQ------------GKAFPLESLPE--LHRI 391 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHHHHHhc------------cceechhHhcc--cCCC
Confidence 457999999999999999998653 567888888877766544211 11122233332 4689
Q ss_pred cEEEEecCC
Q 005788 462 RAIIVLASD 470 (677)
Q Consensus 462 ~aVIIltdd 470 (677)
|.||..++.
T Consensus 392 DiVInatP~ 400 (477)
T PRK09310 392 DIIINCLPP 400 (477)
T ss_pred CEEEEcCCC
Confidence 999998875
No 451
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=41.12 E-value=49 Score=35.95 Aligned_cols=74 Identities=20% Similarity=0.153 Sum_probs=51.4
Q ss_pred eEEEEe-ccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc-cc
Q 005788 384 HILILG-WSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS-KA 461 (677)
Q Consensus 384 HIII~G-~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~-~A 461 (677)
.|+|+| .|-.|...+.+|.+++ +.||++|+-..--.+.+.. ..+.++.||..|.+.|.++=.+ +-
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~G------~~vvV~DNL~~g~~~~v~~-------~~~~f~~gDi~D~~~L~~vf~~~~i 68 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKTG------HEVVVLDNLSNGHKIALLK-------LQFKFYEGDLLDRALLTAVFEENKI 68 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHCC------CeEEEEecCCCCCHHHhhh-------ccCceEEeccccHHHHHHHHHhcCC
Confidence 477875 5667889999999865 7899998754332333321 1157899999999999986554 56
Q ss_pred cEEEEecCC
Q 005788 462 RAIIVLASD 470 (677)
Q Consensus 462 ~aVIIltdd 470 (677)
++||=.+..
T Consensus 69 daViHFAa~ 77 (329)
T COG1087 69 DAVVHFAAS 77 (329)
T ss_pred CEEEECccc
Confidence 777766644
No 452
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=40.95 E-value=2.1e+02 Score=30.52 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=41.6
Q ss_pred EEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhh--cccCCccEEEEEeCCCCHHHHhccCccccc
Q 005788 385 ILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLE--FDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (677)
Q Consensus 385 III~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~--~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~ 462 (677)
|.|+|.|..|..++..|...+ -. .|+++|.+++..+....++. ......... +... .+.++ +.+||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~----l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~-I~~t-~d~~~-----l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKE----LG-DVVLLDIVEGLPQGKALDISQAAPILGSDTK-VTGT-NDYED-----IAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCC----Cc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeE-EEEc-CCHHH-----hCCCC
Confidence 469999999999888776543 12 79999988754321111110 011111112 2222 12222 57899
Q ss_pred EEEEecCC
Q 005788 463 AIIVLASD 470 (677)
Q Consensus 463 aVIIltdd 470 (677)
.||+....
T Consensus 69 iVIit~g~ 76 (300)
T cd01339 69 VVVITAGI 76 (300)
T ss_pred EEEEecCC
Confidence 99997754
No 453
>COG2985 Predicted permease [General function prediction only]
Probab=40.90 E-value=17 Score=41.53 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=47.8
Q ss_pred cCCCCCCCcHHhHhhhCCCeEEEEEEEeecCCeEEeCCCCCceecCCCEEEEEEeCCCCCC
Q 005788 560 RWPQLDDLRFEEVVISFPDAIPCGIKVAAEGGKIILNPDDNYVLKEGDEVLVIAEDDDTYA 620 (677)
Q Consensus 560 ~~p~lvGktf~el~~~~~~aiVIGI~r~~~~G~~ilnP~~d~vI~~GD~LiVIg~~~di~~ 620 (677)
..+...||+++|+.....++.+=-+.| +++.+.|++|++++.||++-|.|+.+.+.+
T Consensus 294 tn~~vlGk~l~~L~~~~~g~~I~Ri~R----a~iElv~~~d~~lq~gDvl~vvg~~~~v~~ 350 (544)
T COG2985 294 TNENVLGKRLRDLNLTEYGVFINRINR----ADIELVASDDVVLQKGDVLQVVGRARRVKA 350 (544)
T ss_pred echhhhccchhhcCccccceeeeehhh----cCccccCCcchhhhhcceeeeccchHHHHH
Confidence 357899999999987767787777776 457788999999999999999999886655
No 454
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=40.84 E-value=42 Score=34.85 Aligned_cols=71 Identities=18% Similarity=0.053 Sum_probs=49.4
Q ss_pred eEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc-
Q 005788 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA- 461 (677)
Q Consensus 384 HIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A- 461 (677)
+|+|.|. |-.|..++++|.+.+ +.|+.+++......... .++.++.||..+.+.. ++.++..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g------~~V~~~~r~~~~~~~~~---------~~~~~~~~d~~~~~~~-~~~~~~~~ 65 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG------HDVRGLDRLRDGLDPLL---------SGVEFVVLDLTDRDLV-DELAKGVP 65 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC------CeEEEEeCCCccccccc---------cccceeeecccchHHH-HHHHhcCC
Confidence 3899996 778999999999763 78888887654432210 2566788998887444 4444444
Q ss_pred cEEEEecCC
Q 005788 462 RAIIVLASD 470 (677)
Q Consensus 462 ~aVIIltdd 470 (677)
|+||-++..
T Consensus 66 d~vih~aa~ 74 (314)
T COG0451 66 DAVIHLAAQ 74 (314)
T ss_pred CEEEEcccc
Confidence 888888766
No 455
>PLN02985 squalene monooxygenase
Probab=40.81 E-value=62 Score=37.52 Aligned_cols=35 Identities=29% Similarity=0.271 Sum_probs=29.5
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
..-+|+|+|.|-.|..++..|... +..|+|+|++.
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~------G~~V~vlEr~~ 76 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKD------GRRVHVIERDL 76 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHc------CCeEEEEECcC
Confidence 456899999999999999999765 37899999875
No 456
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=40.77 E-value=1.5e+02 Score=34.85 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=45.4
Q ss_pred eeecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 005788 379 VIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (677)
Q Consensus 379 v~~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I 458 (677)
...+..++|+|.|..|..+++++....+ ..+|-.+|+|++..-.. . .++. +.|.-.-.+..++-++
T Consensus 113 ~~~~~r~lIiGAG~ag~~l~r~~~~~~~----~~pV~fiDdd~~~~g~~-------i--~Gv~-V~g~~~i~~~v~~~~~ 178 (588)
T COG1086 113 KDNRIRLLIIGAGSAGDLLLRALRRDPE----YTPVAFLDDDPDLTGMK-------I--RGVP-VLGRIEIERVVEELGI 178 (588)
T ss_pred ccCCCceEEEcCchHHHHHHHHHHhCCC----cceEEEECCChhhcCCE-------E--ecee-eechhHHHHHHHHcCC
Confidence 4467899999999999999999987643 46888899888542211 1 2343 3454445566666666
Q ss_pred c
Q 005788 459 S 459 (677)
Q Consensus 459 ~ 459 (677)
+
T Consensus 179 ~ 179 (588)
T COG1086 179 Q 179 (588)
T ss_pred c
Confidence 5
No 457
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=40.20 E-value=1.2e+02 Score=32.55 Aligned_cols=72 Identities=19% Similarity=0.175 Sum_probs=43.8
Q ss_pred EEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhc--ccCCccEEEEEeCCCCHHHHhccCcccccEE
Q 005788 387 ILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEF--DFMGTSVICRSGSPLILADLKKVSVSKARAI 464 (677)
Q Consensus 387 I~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~--~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~aV 464 (677)
|+|.|.+|..++-.|...+ -...++|+|.+++..+....++.. .+...++.+. + .+.+ ..++||.|
T Consensus 1 iIGaG~VG~~~a~~l~~~~----l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~-~--~~~~-----~~~daDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQG----IADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR-S--GDYS-----DCKDADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHhcC----CCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe-c--CCHH-----HHCCCCEE
Confidence 6899999999998887543 224799999876544433333321 1122333333 3 2344 45678999
Q ss_pred EEecCC
Q 005788 465 IVLASD 470 (677)
Q Consensus 465 IIltdd 470 (677)
|+++..
T Consensus 69 Vitag~ 74 (299)
T TIGR01771 69 VITAGA 74 (299)
T ss_pred EECCCC
Confidence 998876
No 458
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=40.18 E-value=2.5e+02 Score=31.93 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=29.7
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
++-||+|+|.|..|.++++.|...+- ..++++|.+.
T Consensus 19 ~~s~VlliG~gglGsEilKNLvL~GI-----g~~tIvD~~~ 54 (425)
T cd01493 19 ESAHVCLLNATATGTEILKNLVLPGI-----GSFTIVDGSK 54 (425)
T ss_pred hhCeEEEEcCcHHHHHHHHHHHHcCC-----CeEEEECCCc
Confidence 57899999999999999999998753 3577777663
No 459
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=40.17 E-value=77 Score=27.55 Aligned_cols=70 Identities=16% Similarity=0.081 Sum_probs=43.6
Q ss_pred EeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccEEEEe
Q 005788 388 LGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVL 467 (677)
Q Consensus 388 ~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~aVIIl 467 (677)
||.|..+..+++.+ ..+. ...++.+|.+++.++...+.... .+..+.++++|..+... .-.++|.|+..
T Consensus 6 cG~G~~~~~l~~~~-~~~~----~~~~~gvD~s~~~l~~~~~~~~~--~~~~~~~~~~D~~~l~~----~~~~~D~v~~~ 74 (101)
T PF13649_consen 6 CGTGRVTRALARRF-DAGP----SSRVIGVDISPEMLELAKKRFSE--DGPKVRFVQADARDLPF----SDGKFDLVVCS 74 (101)
T ss_dssp -TTSHHHHHHHHHS----------SEEEEEES-HHHHHHHHHHSHH--TTTTSEEEESCTTCHHH----HSSSEEEEEE-
T ss_pred cCCcHHHHHHHHHh-hhcc----cceEEEEECCHHHHHHHHHhchh--cCCceEEEECCHhHCcc----cCCCeeEEEEc
Confidence 67777777777776 3221 15799999999888776554321 23477889999987432 22378888884
Q ss_pred c
Q 005788 468 A 468 (677)
Q Consensus 468 t 468 (677)
.
T Consensus 75 ~ 75 (101)
T PF13649_consen 75 G 75 (101)
T ss_dssp T
T ss_pred C
Confidence 3
No 460
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=40.04 E-value=38 Score=39.67 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHH-hhhhh-------ccC--CCHHHHHHHHHHhhhccCC--C-CccCCCCCeEEeeeehhhh-HHHH
Q 005788 289 LALLFATIFLIIFGG-LALYA-------VSD--SSFAEALWLSWTFVADSGN--H-ADRVGTGPRIVSVSISSGG-MLIF 354 (677)
Q Consensus 289 ~~Ll~~~l~lil~g~-l~~~~-------iE~--~s~~dAlw~t~vTiTTvGy--g-~~p~t~~gRi~~v~lil~G-i~if 354 (677)
...+++..+++++++ +.... .|+ ..|.|.+|-...-+.|+|. + ..+.+..++++.+++|+.| ++.+
T Consensus 417 ~~vilv~~~lVl~~taial~~~~~~~~~~n~g~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~Gpi 496 (559)
T PRK05482 417 ALAILVHPLLVLVGTALALATPAGRAGISNPGPHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFLPI 496 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555 33323 232 5899999999999999987 3 3455778898877777666 5555
Q ss_pred HHHHHH
Q 005788 355 AMMLGL 360 (677)
Q Consensus 355 a~lig~ 360 (677)
..++++
T Consensus 497 t~~lAl 502 (559)
T PRK05482 497 IPVLAI 502 (559)
T ss_pred HHHHHH
Confidence 555543
No 461
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=40.01 E-value=69 Score=34.38 Aligned_cols=76 Identities=21% Similarity=0.188 Sum_probs=51.0
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
...+++|+|.|-.+..++-.|...+. ..++|+.++.++.+++.+.+.. ... .+. .....++.... +
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~-----~~i~V~NRt~~ra~~La~~~~~----~~~-~~~--~~~~~~~~~~~--~ 190 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGA-----KRITVVNRTRERAEELADLFGE----LGA-AVE--AAALADLEGLE--E 190 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEEeCCHHHHHHHHHHhhh----ccc-ccc--ccccccccccc--c
Confidence 35789999999999999999998752 5789999999888877654321 110 111 11222232222 7
Q ss_pred ccEEEEecCC
Q 005788 461 ARAIIVLASD 470 (677)
Q Consensus 461 A~aVIIltdd 470 (677)
||.+|=.|+-
T Consensus 191 ~dliINaTp~ 200 (283)
T COG0169 191 ADLLINATPV 200 (283)
T ss_pred cCEEEECCCC
Confidence 8888888875
No 462
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=40.01 E-value=94 Score=31.90 Aligned_cols=80 Identities=18% Similarity=0.097 Sum_probs=48.8
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEE-cCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHh----cc
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLA-ERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLK----KV 456 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLi-D~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~----rA 456 (677)
..++|.|.+. .|..++++|.+.+ ..|++. .++++..+...+++... .+..+.++.+|.++.+.+. ++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G------~~V~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~d~~~~~~~~~~~ 74 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEG------YRVVLHYHRSAAAASTLAAELNAR-RPNSAVTCQADLSNSATLFSRCEAI 74 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCC------CeEEEEcCCcHHHHHHHHHHHHhc-cCCceEEEEccCCCchhhHHHHHHH
Confidence 3578888775 6889999998754 456664 44555555544432111 1234667889999986542 11
Q ss_pred ------CcccccEEEEecC
Q 005788 457 ------SVSKARAIIVLAS 469 (677)
Q Consensus 457 ------~I~~A~aVIIltd 469 (677)
...+.|.+|-.+.
T Consensus 75 ~~~~~~~~g~iD~lv~nAG 93 (267)
T TIGR02685 75 IDACFRAFGRCDVLVNNAS 93 (267)
T ss_pred HHHHHHccCCceEEEECCc
Confidence 2235777776664
No 463
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=39.95 E-value=56 Score=32.57 Aligned_cols=41 Identities=22% Similarity=0.115 Sum_probs=31.0
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHH
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~ 429 (677)
.+|-|+|.|..|..++..|...+ +.|+-+|.|++.++.+.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G------~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG------HQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT------SEEEEE-S-HHHHHHHHT
T ss_pred CEEEEECCCcchHHHHHHHHhCC------CEEEEEeCChHHHHHHhh
Confidence 36889999999999999998764 899999999998887543
No 464
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=39.91 E-value=79 Score=32.51 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=22.8
Q ss_pred CeEEEEecc---chHHHHHHHHHHhcccCCCCeEEEEEcC
Q 005788 383 NHILILGWS---DKLGSLLKQLAVANKSIGGGVIVVLAER 419 (677)
Q Consensus 383 nHIII~G~g---~~g~~Ll~eL~~~~~s~~~~~iVVLiD~ 419 (677)
..++|.|.+ ..|..++++|.+.+ ..|+++..
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G------~~v~~~~~ 40 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAG------AELGITYL 40 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCC------CEEEEEec
Confidence 467888973 57999999998764 56666643
No 465
>PTZ00367 squalene epoxidase; Provisional
Probab=39.58 E-value=40 Score=39.65 Aligned_cols=35 Identities=29% Similarity=0.241 Sum_probs=29.5
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
..-.|||+|.|-.|..++..|...+ +.|+|+|+++
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G------~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQG------RKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcC------CEEEEEcccc
Confidence 4568999999999999999987653 7899999875
No 466
>PRK06753 hypothetical protein; Provisional
Probab=39.54 E-value=28 Score=37.69 Aligned_cols=33 Identities=18% Similarity=0.058 Sum_probs=28.6
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChH
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE 422 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e 422 (677)
+|+|+|.|..|..++..|...+ +.|+|+|+++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g------~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQG------HEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCC------CcEEEEecCCc
Confidence 7999999999999999998754 78999998864
No 467
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.16 E-value=51 Score=35.14 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=34.1
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHH
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~ 429 (677)
.+|-|+|.|..|..++..|...+ +.|+++|.+++.++...+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g------~~V~~~d~~~~~~~~~~~ 45 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG------LQVVLIDVMEGALERARG 45 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC------CeEEEEECCHHHHHHHHH
Confidence 57999999999999999998654 679999998887776544
No 468
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=39.08 E-value=73 Score=35.01 Aligned_cols=74 Identities=18% Similarity=0.131 Sum_probs=44.8
Q ss_pred eecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc-Cc
Q 005788 380 IEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV-SV 458 (677)
Q Consensus 380 ~~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA-~I 458 (677)
..+.+|+|+|.|..+..++..+... +..|++++.+++....... + .++..|..|.+.+.+. .-
T Consensus 10 ~~~~~ilIiG~g~~~~~~~~a~~~~------G~~v~~~~~~~~~~~~~~a---------d-~~~~~~~~d~~~l~~~~~~ 73 (395)
T PRK09288 10 PSATRVMLLGSGELGKEVAIEAQRL------GVEVIAVDRYANAPAMQVA---------H-RSHVIDMLDGDALRAVIER 73 (395)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCCchHHhh---------h-heEECCCCCHHHHHHHHHH
Confidence 4566899999998888888777654 3677788776643111111 1 1345666676665443 22
Q ss_pred ccccEEEEecC
Q 005788 459 SKARAIIVLAS 469 (677)
Q Consensus 459 ~~A~aVIIltd 469 (677)
.+.|.|+...+
T Consensus 74 ~~id~vi~~~e 84 (395)
T PRK09288 74 EKPDYIVPEIE 84 (395)
T ss_pred hCCCEEEEeeC
Confidence 35677766554
No 469
>PRK06128 oxidoreductase; Provisional
Probab=38.78 E-value=96 Score=32.65 Aligned_cols=79 Identities=11% Similarity=0.074 Sum_probs=48.3
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCCh--HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC--
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDK--EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-- 457 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~--e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-- 457 (677)
..++|.|.+. .|..++++|...+ ..|++...+. ...++..+... . .+.++.++.+|.++.+.++++-
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G------~~V~i~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~Dl~~~~~v~~~~~~ 127 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREG------ADIALNYLPEEEQDAAEVVQLIQ-A-EGRKAVALPGDLKDEAFCRQLVER 127 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcC------CEEEEEeCCcchHHHHHHHHHHH-H-cCCeEEEEecCCCCHHHHHHHHHH
Confidence 5788888755 6889999998764 4566654332 22222222111 1 1346778899999988776542
Q ss_pred ----cccccEEEEecC
Q 005788 458 ----VSKARAIIVLAS 469 (677)
Q Consensus 458 ----I~~A~aVIIltd 469 (677)
..+-|.+|-.+.
T Consensus 128 ~~~~~g~iD~lV~nAg 143 (300)
T PRK06128 128 AVKELGGLDILVNIAG 143 (300)
T ss_pred HHHHhCCCCEEEECCc
Confidence 124677777664
No 470
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=38.75 E-value=61 Score=28.72 Aligned_cols=32 Identities=16% Similarity=0.041 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 005788 160 YYMLIINCILCVCYAIHLRDRVEKLEEENSSL 191 (677)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (677)
++++.+.+.+++++..|+..|+.+++.++..|
T Consensus 4 l~iv~~~~~v~~~i~~y~~~k~~ka~~~~~kL 35 (87)
T PF10883_consen 4 LQIVGGVGAVVALILAYLWWKVKKAKKQNAKL 35 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443444444555556666666555554444
No 471
>PRK06988 putative formyltransferase; Provisional
Probab=38.63 E-value=83 Score=34.08 Aligned_cols=76 Identities=12% Similarity=0.092 Sum_probs=48.4
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChH-------HHHHHHHhhhcccCCccEEEEE-eCCCCHHHHh
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE-------EMEMDIAKLEFDFMGTSVICRS-GSPLILADLK 454 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e-------~~e~~l~~~~~~~~~~~V~~I~-Gd~~~~e~L~ 454 (677)
.+|+++|.++.+...+++|...+. ....|+...|.. .+.+...+ .++.++. .+..+++.++
T Consensus 3 mkIvf~Gs~~~a~~~L~~L~~~~~----~i~~Vvt~~d~~~~~~~~~~v~~~A~~-------~gip~~~~~~~~~~~~~~ 71 (312)
T PRK06988 3 PRAVVFAYHNVGVRCLQVLLARGV----DVALVVTHEDNPTENIWFGSVAAVAAE-------HGIPVITPADPNDPELRA 71 (312)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCC----CEEEEEcCCCCCccCcCCCHHHHHHHH-------cCCcEEccccCCCHHHHH
Confidence 479999999999999999986531 233444443321 33333332 3455554 5666666666
Q ss_pred ccCcccccEEEEecC
Q 005788 455 KVSVSKARAIIVLAS 469 (677)
Q Consensus 455 rA~I~~A~aVIIltd 469 (677)
...-.++|.+|+..-
T Consensus 72 ~l~~~~~Dliv~~~~ 86 (312)
T PRK06988 72 AVAAAAPDFIFSFYY 86 (312)
T ss_pred HHHhcCCCEEEEehh
Confidence 666677888887763
No 472
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=38.58 E-value=55 Score=36.99 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=28.0
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCC
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d 420 (677)
...+|+|+|.|..|...+..|...+ +.|+|+|+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g------~~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKG------YDVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCC------CeEEEEccC
Confidence 4578999999999999999997653 678888865
No 473
>PLN02206 UDP-glucuronate decarboxylase
Probab=38.54 E-value=1.5e+02 Score=33.56 Aligned_cols=74 Identities=11% Similarity=0.026 Sum_probs=46.3
Q ss_pred ecCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc
Q 005788 381 EKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS 459 (677)
Q Consensus 381 ~knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~ 459 (677)
...+|+|.|. |-.|..|+++|...+ +.|+++++......+.... .+...++.++.||..+... .
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G------~~V~~ld~~~~~~~~~~~~---~~~~~~~~~i~~D~~~~~l------~ 182 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG------DSVIVVDNFFTGRKENVMH---HFSNPNFELIRHDVVEPIL------L 182 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc------CEEEEEeCCCccchhhhhh---hccCCceEEEECCccChhh------c
Confidence 3467999996 667999999998764 5677776542211111100 0112456778898766532 3
Q ss_pred cccEEEEecC
Q 005788 460 KARAIIVLAS 469 (677)
Q Consensus 460 ~A~aVIIltd 469 (677)
.+|.||=++.
T Consensus 183 ~~D~ViHlAa 192 (442)
T PLN02206 183 EVDQIYHLAC 192 (442)
T ss_pred CCCEEEEeee
Confidence 5788888775
No 474
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=38.52 E-value=2.7e+02 Score=28.74 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=70.9
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcC-ChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAER-DKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~-d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..+.|+|.|+.|..+.+.|..++ +.|++..+ +++..+...+.+ +.. +.|-. . ..-++.|
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag------~eV~igs~r~~~~~~a~a~~l-----~~~---i~~~~--~----~dA~~~a 61 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG------HEVIIGSSRGPKALAAAAAAL-----GPL---ITGGS--N----EDAAALA 61 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCC------CeEEEecCCChhHHHHHHHhh-----ccc---cccCC--h----HHHHhcC
Confidence 35789999999999999999875 78888854 444444433321 111 33321 1 1124578
Q ss_pred cEEEEecCCCCCccchHHHHHHHHHHhhhcCCCCceEEEEeCCCCCHHHHHHcCCCeeEEEech-HHHHHHHHHHhcCCc
Q 005788 462 RAIIVLASDENADQSDARALRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAH-DVIGRLMIQCALQPG 540 (677)
Q Consensus 462 ~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p~l~~~IIArv~d~e~~~~l~~aGad~VevVv~~-el~a~lLaq~a~~Pg 540 (677)
|.|+...+- ....-+.-.++..- ..+||.-+.+|-.. ... ..+ ..+.+. .-.+..+++.+-.+.
T Consensus 62 DVVvLAVP~-------~a~~~v~~~l~~~~---~~KIvID~tnp~~~-~~~--~~~--~~~~~~~~saae~va~~lp~ak 126 (211)
T COG2085 62 DVVVLAVPF-------EAIPDVLAELRDAL---GGKIVIDATNPIEV-NGE--PGD--LYLVPSEGSAAEIVAKLLPGAK 126 (211)
T ss_pred CEEEEeccH-------HHHHhHHHHHHHHh---CCeEEEecCCCccc-cCC--ccc--cccCCCCCcHHHHHHHHCCCcc
Confidence 888888862 12222233333322 23688888887432 111 111 112223 344666666665555
Q ss_pred HHHHHHHH
Q 005788 541 LAQIWEDI 548 (677)
Q Consensus 541 l~~Vl~~L 548 (677)
+..-++++
T Consensus 127 VVkAFn~i 134 (211)
T COG2085 127 VVKAFNTI 134 (211)
T ss_pred hhhhhccc
Confidence 55554443
No 475
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=38.49 E-value=33 Score=36.06 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=26.7
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChH
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE 422 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e 422 (677)
.|+|+|.|-.|..++..|...+ +.|+|+|+.+.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G------~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAG------IDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT------CEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcc------cccccchhccc
Confidence 5899999999999999998874 78999998764
No 476
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.45 E-value=54 Score=34.67 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=34.5
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHH
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIA 429 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~ 429 (677)
.+|-|+|.|..|..++..|...+ +.|++.|.+++.++...+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G------~~V~l~d~~~~~~~~~~~ 45 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG------YDVLLNDVSADRLEAGLA 45 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC------CeEEEEeCCHHHHHHHHH
Confidence 57999999999999999998764 789999999888776543
No 477
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=38.44 E-value=46 Score=36.28 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=26.1
Q ss_pred eEEEEec-cchHHHHHHHHHHhcccC-CCCeEEEEEcCCh
Q 005788 384 HILILGW-SDKLGSLLKQLAVANKSI-GGGVIVVLAERDK 421 (677)
Q Consensus 384 HIII~G~-g~~g~~Ll~eL~~~~~s~-~~~~iVVLiD~d~ 421 (677)
||.|+|. |.+|..++..|...+--. .....++|+|.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~ 40 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPP 40 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCC
Confidence 7899999 999999998887533100 0112588888754
No 478
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=38.40 E-value=37 Score=35.72 Aligned_cols=31 Identities=29% Similarity=0.183 Sum_probs=27.9
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCC
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERD 420 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d 420 (677)
+|+|+|.|-.|..++.+|.+.+ ..|+|+|++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G------~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRG------HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTT------SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCC------CeEEEEeec
Confidence 6899999999999999999854 789999987
No 479
>PRK05865 hypothetical protein; Provisional
Probab=38.35 E-value=1.7e+02 Score=36.28 Aligned_cols=69 Identities=14% Similarity=-0.006 Sum_probs=50.6
Q ss_pred eEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccccc
Q 005788 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKAR 462 (677)
Q Consensus 384 HIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~ 462 (677)
+|+|.|. |-.|..++++|...+ +.|++++++.... . ..++.++.||..+.+.+.++ ++.+|
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G------~~Vv~l~R~~~~~---~--------~~~v~~v~gDL~D~~~l~~a-l~~vD 63 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQG------HEVVGIARHRPDS---W--------PSSADFIAADIRDATAVESA-MTGAD 63 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCc------CEEEEEECCchhh---c--------ccCceEEEeeCCCHHHHHHH-HhCCC
Confidence 5899997 667999999998754 6777777664321 0 12467899999999888764 34689
Q ss_pred EEEEecCC
Q 005788 463 AIIVLASD 470 (677)
Q Consensus 463 aVIIltdd 470 (677)
.||-++..
T Consensus 64 ~VVHlAa~ 71 (854)
T PRK05865 64 VVAHCAWV 71 (854)
T ss_pred EEEECCCc
Confidence 99998754
No 480
>PRK08618 ornithine cyclodeaminase; Validated
Probab=38.00 E-value=1.4e+02 Score=32.45 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=49.0
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKA 461 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A 461 (677)
..++.|+|.|..+...+..+.... +-..|.+.+++++..++..+++...+ ++.+.. ..+.+.. +.+|
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~----~~~~v~v~~r~~~~a~~~~~~~~~~~---~~~~~~--~~~~~~~----~~~a 193 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVR----DIERVRVYSRTFEKAYAFAQEIQSKF---NTEIYV--VNSADEA----IEEA 193 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcC----CccEEEEECCCHHHHHHHHHHHHHhc---CCcEEE--eCCHHHH----HhcC
Confidence 567999999999998887776432 23578889999988887766442111 121111 1222222 2579
Q ss_pred cEEEEecCC
Q 005788 462 RAIIVLASD 470 (677)
Q Consensus 462 ~aVIIltdd 470 (677)
|.||..|+.
T Consensus 194 DiVi~aT~s 202 (325)
T PRK08618 194 DIIVTVTNA 202 (325)
T ss_pred CEEEEccCC
Confidence 999999974
No 481
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=37.89 E-value=31 Score=38.62 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=28.6
Q ss_pred eeecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 379 VIEKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 379 v~~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
...+.||||+|.|--|...+++|... +..|+|+|+++
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~------~~~ItlI~~~~ 43 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPK------KYNITVISPRN 43 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcC------CCeEEEEcCCC
Confidence 34678999999999899999888532 36788887654
No 482
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=37.75 E-value=2.3e+02 Score=31.23 Aligned_cols=67 Identities=16% Similarity=0.289 Sum_probs=43.1
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
....|-|+|+|..|..+++.|...+ ..|++.++.....+.. .. .++.+ .+.+++ +++
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~d~G------~~ViV~~r~~~s~~~A-~~-------~G~~v-----~sl~Ea----ak~ 71 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLRDSG------VEVVVGVRPGKSFEVA-KA-------DGFEV-----MSVSEA----VRT 71 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCc------CEEEEEECcchhhHHH-HH-------cCCEE-----CCHHHH----Hhc
Confidence 3567899999999999999998764 6777776443322221 11 12211 133333 557
Q ss_pred ccEEEEecCC
Q 005788 461 ARAIIVLASD 470 (677)
Q Consensus 461 A~aVIIltdd 470 (677)
||.|+++.++
T Consensus 72 ADVV~llLPd 81 (335)
T PRK13403 72 AQVVQMLLPD 81 (335)
T ss_pred CCEEEEeCCC
Confidence 8999999974
No 483
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=37.69 E-value=1e+02 Score=34.26 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=52.2
Q ss_pred ecCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHH--HHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC
Q 005788 381 EKNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEE--MEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS 457 (677)
Q Consensus 381 ~knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~--~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~ 457 (677)
.+.+++|.|. |-.|..++++|.+... ...+.++|..+.. ..+.. .++...++.++.||..+...+.+|-
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~----~~~irv~D~~~~~~~~~~e~----~~~~~~~v~~~~~D~~~~~~i~~a~ 74 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENEL----KLEIRVVDKTPTQSNLPAEL----TGFRSGRVTVILGDLLDANSISNAF 74 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhccc----ccEEEEeccCccccccchhh----hcccCCceeEEecchhhhhhhhhhc
Confidence 4689999984 5579999999987642 3677888876632 22111 1112468999999999999887764
Q ss_pred cccccEEEEec
Q 005788 458 VSKARAIIVLA 468 (677)
Q Consensus 458 I~~A~aVIIlt 468 (677)
..| .|+.++
T Consensus 75 -~~~-~Vvh~a 83 (361)
T KOG1430|consen 75 -QGA-VVVHCA 83 (361)
T ss_pred -cCc-eEEEec
Confidence 444 444444
No 484
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=37.06 E-value=2.3e+02 Score=32.09 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=26.1
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
..+++|+|.|+.+..+++.+..... . +-.++=.+|.++
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~~~~-~-g~~vvGfidd~~ 162 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQSNPQ-L-GLRPLAVVDTDP 162 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhhCcc-C-CcEEEEEEeCCc
Confidence 4579999999999999999875321 1 123454566554
No 485
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=36.99 E-value=90 Score=33.46 Aligned_cols=78 Identities=15% Similarity=0.171 Sum_probs=48.5
Q ss_pred eEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCCh--HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcc-
Q 005788 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDK--EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVS- 459 (677)
Q Consensus 384 HIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~--e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~- 459 (677)
+|+|.|. |-.|..++++|...+. ..|+.++... ...+.. .... .+.++.++.||..+.+.++++=-+
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~-----~~v~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~ 72 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQ-----DSVVNVDKLTYAGNLESL-ADVS---DSERYVFEHADICDRAELDRIFAQH 72 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCC-----CeEEEecCCCccchHHHH-Hhcc---cCCceEEEEecCCCHHHHHHHHHhc
Confidence 5888887 5578999999987641 3455555321 111211 1110 123577899999999888775322
Q ss_pred cccEEEEecCC
Q 005788 460 KARAIIVLASD 470 (677)
Q Consensus 460 ~A~aVIIltdd 470 (677)
.+|.||-++..
T Consensus 73 ~~d~vih~A~~ 83 (352)
T PRK10084 73 QPDAVMHLAAE 83 (352)
T ss_pred CCCEEEECCcc
Confidence 57888888754
No 486
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=36.97 E-value=72 Score=33.47 Aligned_cols=68 Identities=25% Similarity=0.136 Sum_probs=46.3
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV 456 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA 456 (677)
++-+++-|+|-.|..+.++|...+ .-+++++...|..+. ..+++.-.....+.+++-|.++..+++++
T Consensus 6 Kna~vtggagGIGl~~sk~Ll~kg------ik~~~i~~~~En~~a-~akL~ai~p~~~v~F~~~DVt~~~~~~~~ 73 (261)
T KOG4169|consen 6 KNALVTGGAGGIGLATSKALLEKG------IKVLVIDDSEENPEA-IAKLQAINPSVSVIFIKCDVTNRGDLEAA 73 (261)
T ss_pred ceEEEecCCchhhHHHHHHHHHcC------chheeehhhhhCHHH-HHHHhccCCCceEEEEEeccccHHHHHHH
Confidence 344444567888999999999865 566677665555433 33343222346899999999999888764
No 487
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.97 E-value=96 Score=35.19 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=42.6
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChH-HHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE-EMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e-~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
..+|.|+|+|..|..+++-|...+ ..|.+.|.++. .......++ ...++.+..|+.. .+.+ .+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G------~~V~~~D~~~~~~~~~~~~~l----~~~gi~~~~~~~~-~~~~-----~~ 77 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG------AKVTAFDKKSEEELGEVSNEL----KELGVKLVLGENY-LDKL-----DG 77 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC------CEEEEECCCCCccchHHHHHH----HhCCCEEEeCCCC-hHHh-----cc
Confidence 358999999999999988887653 78999996542 111111111 1235666667543 2333 45
Q ss_pred ccEEEEe
Q 005788 461 ARAIIVL 467 (677)
Q Consensus 461 A~aVIIl 467 (677)
+|.||+.
T Consensus 78 ~dlVV~S 84 (458)
T PRK01710 78 FDVIFKT 84 (458)
T ss_pred CCEEEEC
Confidence 7766554
No 488
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=36.94 E-value=1.2e+02 Score=31.94 Aligned_cols=77 Identities=21% Similarity=0.157 Sum_probs=53.6
Q ss_pred CeEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc-----
Q 005788 383 NHILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV----- 456 (677)
Q Consensus 383 nHIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA----- 456 (677)
+-++|-|.+. .|..++++|..++ ..|+++.+..++++++..++. ...+.+..=|-+|.+.++.+
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G------~~vvl~aRR~drL~~la~~~~----~~~~~~~~~DVtD~~~~~~~i~~~~ 76 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAG------AKVVLAARREERLEALADEIG----AGAALALALDVTDRAAVEAAIEALP 76 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCC------CeEEEEeccHHHHHHHHHhhc----cCceEEEeeccCCHHHHHHHHHHHH
Confidence 3466778876 5788999998875 789999999999988776542 13567788888888774332
Q ss_pred -CcccccEEEEecC
Q 005788 457 -SVSKARAIIVLAS 469 (677)
Q Consensus 457 -~I~~A~aVIIltd 469 (677)
...+-|.+|--+.
T Consensus 77 ~~~g~iDiLvNNAG 90 (246)
T COG4221 77 EEFGRIDILVNNAG 90 (246)
T ss_pred HhhCcccEEEecCC
Confidence 3334555554443
No 489
>PLN03139 formate dehydrogenase; Provisional
Probab=36.80 E-value=1.9e+02 Score=32.42 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=50.5
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
...++-|+|+|..|..+++.|...+ ..|+..|......+. .. ..++.+ ..+.+.+. .+
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG------~~V~~~d~~~~~~~~-~~-------~~g~~~----~~~l~ell----~~ 255 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFN------CNLLYHDRLKMDPEL-EK-------ETGAKF----EEDLDAML----PK 255 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCC------CEEEEECCCCcchhh-Hh-------hcCcee----cCCHHHHH----hh
Confidence 4668899999999999999998654 677888865321111 11 112211 11333332 56
Q ss_pred ccEEEEecCCCCCccchHHHHHHHHHHhhhcC
Q 005788 461 ARAIIVLASDENADQSDARALRVVLSLTGVKE 492 (677)
Q Consensus 461 A~aVIIltdd~~~~~sDa~NI~i~Lsar~l~p 492 (677)
||.|++..+. ..+..++.-.-.+..+.+
T Consensus 256 sDvV~l~lPl----t~~T~~li~~~~l~~mk~ 283 (386)
T PLN03139 256 CDVVVINTPL----TEKTRGMFNKERIAKMKK 283 (386)
T ss_pred CCEEEEeCCC----CHHHHHHhCHHHHhhCCC
Confidence 8999988864 234445543334444554
No 490
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=36.79 E-value=62 Score=35.38 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=45.2
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccC-ccccc
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVS-VSKAR 462 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~-I~~A~ 462 (677)
+|+|+|.|..+..++..+.+.+ ..|+++|.++...-... .+ .++.++..|.+.|.+.- -.+.|
T Consensus 1 kililG~g~~~~~l~~aa~~~G------~~v~~~d~~~~~~~~~~---------ad-~~~~~~~~d~~~l~~~~~~~~id 64 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLG------VEVIAVDRYANAPAMQV---------AH-RSYVINMLDGDALRAVIEREKPD 64 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcC------CEEEEEeCCCCCchhhh---------Cc-eEEEcCCCCHHHHHHHHHHhCCC
Confidence 4789999999999998877653 67888877764321111 12 23456777877776532 23577
Q ss_pred EEEEecC
Q 005788 463 AIIVLAS 469 (677)
Q Consensus 463 aVIIltd 469 (677)
.|+...+
T Consensus 65 ~v~~~~e 71 (380)
T TIGR01142 65 YIVPEIE 71 (380)
T ss_pred EEEeccC
Confidence 7776553
No 491
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=36.19 E-value=1.6e+02 Score=31.61 Aligned_cols=80 Identities=10% Similarity=0.013 Sum_probs=46.6
Q ss_pred cCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh---HHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc
Q 005788 382 KNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK---EEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV 458 (677)
Q Consensus 382 knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~---e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I 458 (677)
..+++|+|.|-.+..++-.|...+ -..+.|+++++ ++.+.+.+++...+ +..+.+ -+..+.+.+.. .+
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~g-----~~~i~i~nRt~~~~~ka~~la~~~~~~~-~~~~~~--~~~~~~~~l~~-~~ 194 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIEG-----LKEIKLFNRRDEFFDKALAFAQRVNENT-DCVVTV--TDLADQQAFAE-AL 194 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-----CCEEEEEeCCccHHHHHHHHHHHhhhcc-CceEEE--echhhhhhhhh-hc
Confidence 358999999999999888887654 24688888874 45555544332111 111221 11111122322 45
Q ss_pred ccccEEEEecCC
Q 005788 459 SKARAIIVLASD 470 (677)
Q Consensus 459 ~~A~aVIIltdd 470 (677)
.+||.||-.|+-
T Consensus 195 ~~aDivINaTp~ 206 (288)
T PRK12749 195 ASADILTNGTKV 206 (288)
T ss_pred ccCCEEEECCCC
Confidence 678988887764
No 492
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=36.18 E-value=89 Score=32.53 Aligned_cols=77 Identities=21% Similarity=0.104 Sum_probs=46.7
Q ss_pred eEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCc-ccc
Q 005788 384 HILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSV-SKA 461 (677)
Q Consensus 384 HIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I-~~A 461 (677)
+|+|.|. |..|..++++|...+ ..|+++++............. . ..++.++.+|..+.+.++++=- .+.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g------~~V~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 71 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG------HEVVVLDNLSNGSPEALKRGE-R--ITRVTFVEGDLRDRELLDRLFEEHKI 71 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC------CeEEEEeCCCccchhhhhhhc-c--ccceEEEECCCCCHHHHHHHHHhCCC
Confidence 5788886 557889999998754 456666532211111111110 0 0156788999999998876521 257
Q ss_pred cEEEEecC
Q 005788 462 RAIIVLAS 469 (677)
Q Consensus 462 ~aVIIltd 469 (677)
|.||-++.
T Consensus 72 d~vv~~ag 79 (328)
T TIGR01179 72 DAVIHFAG 79 (328)
T ss_pred cEEEECcc
Confidence 88887664
No 493
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=36.06 E-value=1.1e+02 Score=32.97 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=46.7
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCcccccE
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARA 463 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~A~a 463 (677)
+|-++|.|..|..++..|..++ +.|.+.+++++...+.+... +... ..++ +..+..||.
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG------~~v~v~~r~~~ka~~~~~~~-------Ga~~----a~s~----~eaa~~aDv 60 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAG------HEVTVYNRTPEKAAELLAAA-------GATV----AASP----AEAAAEADV 60 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHCC------CEEEEEeCChhhhhHHHHHc-------CCcc----cCCH----HHHHHhCCE
Confidence 5778999999999999999875 89999999988743333321 1110 1222 334678999
Q ss_pred EEEecCC
Q 005788 464 IIVLASD 470 (677)
Q Consensus 464 VIIltdd 470 (677)
||++-.+
T Consensus 61 Vitmv~~ 67 (286)
T COG2084 61 VITMLPD 67 (286)
T ss_pred EEEecCC
Confidence 9998863
No 494
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=36.05 E-value=59 Score=34.78 Aligned_cols=40 Identities=18% Similarity=0.008 Sum_probs=33.5
Q ss_pred CeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHH
Q 005788 383 NHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDI 428 (677)
Q Consensus 383 nHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l 428 (677)
.+|.|+|.|..|..++..|...+ +.|++.|.+++.++...
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G------~~V~v~d~~~~~~~~~~ 42 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG------HEVRLWDADPAAAAAAP 42 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC------CeeEEEeCCHHHHHHHH
Confidence 47999999999999999998764 68999999987766543
No 495
>PRK07236 hypothetical protein; Provisional
Probab=36.04 E-value=37 Score=37.25 Aligned_cols=36 Identities=19% Similarity=-0.057 Sum_probs=30.5
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChH
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE 422 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e 422 (677)
...+|+|+|.|-.|..++..|...+ ..|+|+|+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G------~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAG------WDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC------CCEEEEecCCC
Confidence 3578999999999999999998754 78999998753
No 496
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=36.01 E-value=37 Score=37.45 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=28.2
Q ss_pred eEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCCh
Q 005788 384 HILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDK 421 (677)
Q Consensus 384 HIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~ 421 (677)
+|||||.|-.|..++.+|.+.+ ..|+|+|++.
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g------~~V~vle~~~ 34 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRG------YQVTVFDRHR 34 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCC------CeEEEEeCCC
Confidence 8999999999999999998754 6899999875
No 497
>PLN02712 arogenate dehydrogenase
Probab=35.71 E-value=1.3e+02 Score=36.12 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=29.0
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChH
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKE 422 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e 422 (677)
.+.+|.|+|.|..|..+++.|...+ +.|++.+++..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G------~~V~~~dr~~~ 86 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQG------HTVLAHSRSDH 86 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCC------CEEEEEeCCHH
Confidence 4568999999999999999998753 56777887643
No 498
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=35.53 E-value=1.2e+02 Score=30.21 Aligned_cols=73 Identities=21% Similarity=0.142 Sum_probs=47.7
Q ss_pred eEEEEeccc-hHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhcc--Cccc
Q 005788 384 HILILGWSD-KLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKV--SVSK 460 (677)
Q Consensus 384 HIII~G~g~-~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA--~I~~ 460 (677)
+++|.|.+. .|..++++|.+.+. +..+++..++... . ..+.++.++.+|.++.+.++++ .+..
T Consensus 2 ~vlItGas~gIG~~ia~~l~~~~~----~~~v~~~~~~~~~--~--------~~~~~~~~~~~Dls~~~~~~~~~~~~~~ 67 (235)
T PRK09009 2 NILIVGGSGGIGKAMVKQLLERYP----DATVHATYRHHKP--D--------FQHDNVQWHALDVTDEAEIKQLSEQFTQ 67 (235)
T ss_pred EEEEECCCChHHHHHHHHHHHhCC----CCEEEEEccCCcc--c--------cccCceEEEEecCCCHHHHHHHHHhcCC
Confidence 789999776 58899999987531 2455555554321 1 0134677889999998887653 2345
Q ss_pred ccEEEEecCC
Q 005788 461 ARAIIVLASD 470 (677)
Q Consensus 461 A~aVIIltdd 470 (677)
-|.+|-.+..
T Consensus 68 id~li~~aG~ 77 (235)
T PRK09009 68 LDWLINCVGM 77 (235)
T ss_pred CCEEEECCcc
Confidence 6777776653
No 499
>PLN02712 arogenate dehydrogenase
Probab=35.42 E-value=2.2e+02 Score=34.34 Aligned_cols=68 Identities=21% Similarity=0.132 Sum_probs=44.0
Q ss_pred ecCeEEEEeccchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 381 EKNHILILGWSDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 381 ~knHIII~G~g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
...+|.|+|.|..|..+++.|...+ +.|++.+++.+. +... + .++.+ ..+.+.+.+ ..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G------~~V~~~dr~~~~-~~a~-~-------~Gv~~----~~~~~el~~---~~ 425 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQG------HTVLAYSRSDYS-DEAQ-K-------LGVSY----FSDADDLCE---EH 425 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCc------CEEEEEECChHH-HHHH-H-------cCCeE----eCCHHHHHh---cC
Confidence 5678999999999999999998653 567788877542 2221 1 12221 123333321 35
Q ss_pred ccEEEEecCC
Q 005788 461 ARAIIVLASD 470 (677)
Q Consensus 461 A~aVIIltdd 470 (677)
||.||+.++.
T Consensus 426 aDvVILavP~ 435 (667)
T PLN02712 426 PEVILLCTSI 435 (667)
T ss_pred CCEEEECCCh
Confidence 8999999863
No 500
>PTZ00325 malate dehydrogenase; Provisional
Probab=35.41 E-value=1.6e+02 Score=32.24 Aligned_cols=78 Identities=12% Similarity=-0.073 Sum_probs=44.1
Q ss_pred cCeEEEEec-cchHHHHHHHHHHhcccCCCCeEEEEEcCChHHHHHHHHhhhcccCCccEEEEEeCCCCHHHHhccCccc
Q 005788 382 KNHILILGW-SDKLGSLLKQLAVANKSIGGGVIVVLAERDKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSK 460 (677)
Q Consensus 382 knHIII~G~-g~~g~~Ll~eL~~~~~s~~~~~iVVLiD~d~e~~e~~l~~~~~~~~~~~V~~I~Gd~~~~e~L~rA~I~~ 460 (677)
..+|.|+|. |.+|..++..|...+ ....++|+|.+...-+ .+ ++.. . ...+.+ .+.++..++ ...++.
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~----~~~elvL~Di~~~~g~-a~-Dl~~-~-~~~~~v--~~~td~~~~-~~~l~g 76 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNP----HVSELSLYDIVGAPGV-AA-DLSH-I-DTPAKV--TGYADGELW-EKALRG 76 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCC----CCCEEEEEecCCCccc-cc-chhh-c-CcCceE--EEecCCCch-HHHhCC
Confidence 459999999 999999988876432 2357889987432111 11 1100 0 112222 222222221 234568
Q ss_pred ccEEEEecCC
Q 005788 461 ARAIIVLASD 470 (677)
Q Consensus 461 A~aVIIltdd 470 (677)
||+||++...
T Consensus 77 aDvVVitaG~ 86 (321)
T PTZ00325 77 ADLVLICAGV 86 (321)
T ss_pred CCEEEECCCC
Confidence 9999998876
Done!