BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005789
(677 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NA3|A Chain A, Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens
Length = 348
Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/344 (52%), Positives = 253/344 (73%), Gaps = 4/344 (1%)
Query: 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHG 81
I RL+E+VVNRIAAGEVIQRP +A+KE++EN LDA +TSI V+VK+GGLKLIQ+ D+G G
Sbjct: 9 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 68
Query: 82 IRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYR 141
IR EDL I+CER TTSKL +EDL SI + GFRGEALAS+++V HVT+TT T YR
Sbjct: 69 IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 128
Query: 142 VSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHH 201
SY DG +++ PK CA +GTQI VE+LFYN+ RRK L+N S++Y KI++++ R ++H+
Sbjct: 129 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 188
Query: 202 TNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMD 261
+SFS +K G ADV ++ +S +D+IR+++G +V+ L+++ + + FKM+
Sbjct: 189 AGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGC----EDKTLAFKMN 244
Query: 262 GYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHV 321
GY+SN+NY KK +LF+N RLVE L++A+E VYAA PK + PF+Y+S+ + P++V
Sbjct: 245 GYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNV 304
Query: 322 DVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSNDSRTYKEQT 365
DVNVHPTK EV L++E I+E++Q +E KL SN SR Y QT
Sbjct: 305 DVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQT 348
>pdb|1B62|A Chain A, Mutl Complexed With Adp
Length = 355
Score = 172 bits (435), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 175/336 (52%), Gaps = 7/336 (2%)
Query: 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHG 81
I L + N+IAAGEV++RP S VKELVENSLDA AT I++ ++ GG KLI++ D+G G
Sbjct: 9 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 68
Query: 82 IRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYR 141
I+ ++L + RH TSK++ +DL++I S+GFRGEALAS++ V +T+T+ T ++
Sbjct: 69 IKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQ 128
Query: 142 VSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHH 201
M K A GT + V +LFYN ARRK L+ ++ I +++ R+A+
Sbjct: 129 AYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALAR 188
Query: 202 TNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMD 261
+V+ + +G ++ + + R + + + L Q A E+ +
Sbjct: 189 FDVTINLSHNGKIVRQYRAVPEGGQKE--RRLGAICGTAFLEQALAIEWQHGD---LTLR 243
Query: 262 GYVSNSNYV--AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPE 319
G+V++ N+ A +VN R++ + A+ +P + + + P
Sbjct: 244 GWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPH 303
Query: 320 HVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQS 355
VDVNVHP K EV L+ + I V L+Q
Sbjct: 304 QVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQ 339
>pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
pdb|1BKN|B Chain B, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
Length = 352
Score = 171 bits (434), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 108/335 (32%), Positives = 175/335 (52%), Gaps = 7/335 (2%)
Query: 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHG 81
I L + N+IAAGEV++RP S VKELVENSLDA AT I++ ++ GG KLI++ D+G G
Sbjct: 6 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 65
Query: 82 IRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYR 141
I+ ++L + RH TSK++ +DL++I S+GFRGEALAS++ V +T+T+ T ++
Sbjct: 66 IKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQ 125
Query: 142 VSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHH 201
M K A GT + V +LFYN ARRK L+ ++ I +++ R+A+
Sbjct: 126 AYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALAR 185
Query: 202 TNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMD 261
+V+ + +G ++ + + R + + + L Q A E+ +
Sbjct: 186 FDVTINLSHNGKIVRQYRAVPEGGQKE--RRLGAICGTAFLEQALAIEWQHGD---LTLR 240
Query: 262 GYVSNSNYV--AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPE 319
G+V++ N+ A +VN R++ + A+ +P + + + P
Sbjct: 241 GWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPH 300
Query: 320 HVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQ 354
VDVNVHP K EV L+ + I V L+Q
Sbjct: 301 QVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQ 335
>pdb|1B63|A Chain A, Mutl Complexed With Adpnp
pdb|1NHH|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl Protein (Ln40)
Complex With Adpnp And One Rubidium
pdb|1NHI|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl (Ln40) Complex
With Adpnp And One Potassium
Length = 333
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/329 (32%), Positives = 172/329 (52%), Gaps = 7/329 (2%)
Query: 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHG 81
I L + N+IAAGEV++RP S VKELVENSLDA AT I++ ++ GG KLI++ D+G G
Sbjct: 5 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 64
Query: 82 IRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYR 141
I+ ++L + RH TSK++ +DL++I S+GFRGEALAS++ V +T+T+ T ++
Sbjct: 65 IKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQ 124
Query: 142 VSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHH 201
M K A GT + V +LFYN ARRK L+ ++ I +++ R+A+
Sbjct: 125 AYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALAR 184
Query: 202 TNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMD 261
+V+ + +G ++ + + R + + + L Q A E+ +
Sbjct: 185 FDVTINLSHNGKIVRQYRAVPEGGQKE--RRLGAICGTAFLEQALAIEWQHGD---LTLR 239
Query: 262 GYVSNSNYV--AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPE 319
G+V++ N+ A +VN R++ + A+ +P + + + P
Sbjct: 240 GWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPH 299
Query: 320 HVDVNVHPTKREVSLLNQELIVEKIQSAV 348
VDVNVHP K EV L+ + I V
Sbjct: 300 QVDVNVHPAKHEVRFHQSRLVHDFIYQGV 328
>pdb|1NHJ|A Chain A, Crystal Structure Of N-Terminal 40kd MutlA100P MUTANT
PROTEIN COMPLEX With Adpnp And One Sodium
Length = 333
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 171/329 (51%), Gaps = 7/329 (2%)
Query: 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHG 81
I L + N+IAAGEV++RP S VKELVENSLDA AT I++ ++ GG KLI++ D+G G
Sbjct: 5 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 64
Query: 82 IRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYR 141
I+ ++L + RH TSK++ +DL++I S+GFRGEAL S++ V +T+T+ T ++
Sbjct: 65 IKKDELALALARHATSKIASLDDLEAIISLGFRGEALPSISSVSRLTLTSRTAEQQEAWQ 124
Query: 142 VSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHH 201
M K A GT + V +LFYN ARRK L+ ++ I +++ R+A+
Sbjct: 125 AYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALAR 184
Query: 202 TNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMD 261
+V+ + +G ++ + + R + + + L Q A E+ +
Sbjct: 185 FDVTINLSHNGKIVRQYRAVPEGGQKE--RRLGAICGTAFLEQALAIEWQHGD---LTLR 239
Query: 262 GYVSNSNYV--AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPE 319
G+V++ N+ A +VN R++ + A+ +P + + + P
Sbjct: 240 GWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPH 299
Query: 320 HVDVNVHPTKREVSLLNQELIVEKIQSAV 348
VDVNVHP K EV L+ + I V
Sbjct: 300 QVDVNVHPAKHEVRFHQSRLVHDFIYQGV 328
>pdb|3RBN|A Chain A, Crystal Structure Of Mutl Protein Homolog 1 Isoform 1
[homo Sapiens]
pdb|3RBN|B Chain B, Crystal Structure Of Mutl Protein Homolog 1 Isoform 1
[homo Sapiens]
Length = 284
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 134/227 (59%), Gaps = 17/227 (7%)
Query: 406 AGRLHAYVQ-SKPHTSVASGPNLSAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGL 464
+GR + Y Q S+ + A P +RR +N LTS+ L ++++ H L
Sbjct: 9 SGRENLYFQGSRKEXTAACTP----------RRRIIN----LTSVLSLQEEINEQGHEVL 54
Query: 465 LDIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAP 524
+ + + SF+G + +AL QH T +YL N LS+EL YQ+++ FA+F ++LS+PAP
Sbjct: 55 REXLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAP 114
Query: 525 LSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGNLSRL 584
L +L LAL + +E D KE +AE E LK+KAE L +YF ++ID GNL L
Sbjct: 115 LFDLAXLALDSPESGW--TEEDGPKEGLAEYIVEFLKKKAEXLADYFSLEIDEEGNLIGL 172
Query: 585 PIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAM 631
P+++D Y P ++ +P F+L L +V+W++EK CF++++ FY++
Sbjct: 173 PLLIDNYVPPLEGLPIFILRLATEVNWDEEKECFESLSKECAXFYSI 219
>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
pdb|3H4L|B Chain B, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
Length = 367
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/363 (27%), Positives = 184/363 (50%), Gaps = 50/363 (13%)
Query: 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHG 81
IH++ + V+RI +G+VI +AVKELV+NS+DA+A I ++ KD GL+ I+ SD+G G
Sbjct: 6 IHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDG 65
Query: 82 IRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITK------- 134
I + L +H TSK++K++D+ ++++GFRGEAL+S+ + ++V T T
Sbjct: 66 IDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKADKL 125
Query: 135 -----GHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQNS-SDDYT 188
GH+ + R+ KGT ++V LF+N+ R+K + +T
Sbjct: 126 EYDMVGHITSKTTTSRN-------------KGTTVLVSQLFHNLPVRQKEFSKTFKRQFT 172
Query: 189 KIVDLLSRMAIHHTNVSFSCRK---HGAARADVHSIATSSRLDSIRTVYGVSVASNLVQL 245
K + ++ AI + + FS G + ++ SS +I +V+G L ++
Sbjct: 173 KCLTVIQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEV 232
Query: 246 E------------ASEYNDSSSFV-----FKMDGYVSNSNYVAKKTT---MVLFVNDRLV 285
+ +Y D F+ ++ GY+S +++ + + ++VN R V
Sbjct: 233 DLVLDLNPFKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPV 292
Query: 286 ECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQ 345
E + L + VY TF P +++++ LP +DVNV P KR + L N+ +++ +
Sbjct: 293 EYSTLLKCCNEVY-KTFNNVQFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDIFK 351
Query: 346 SAV 348
+ +
Sbjct: 352 TTL 354
>pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
pdb|1EA6|B Chain B, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
Length = 364
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 187/348 (53%), Gaps = 24/348 (6%)
Query: 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHG 81
I ++ V++I +G+V+ +AVKELVENSLDA AT+I++ +KD G+ LI+VSD+G G
Sbjct: 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 74
Query: 82 IRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYR 141
+ E+ L +H TSK+ ++ DL +++ GFRGEAL+S+ + VT++T G R
Sbjct: 75 VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134
Query: 142 VSY--RDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQ-NSSDDYTKIVDLLSRMA 198
+ + +++ P +GT + V+ LF + R K Q N +Y K+V +L
Sbjct: 135 LMFDHNGKIIQKTPY--PRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYC 192
Query: 199 IHHTNVSFSCRK---HGAARADVHSIATSSRLDSIRTVYGVSVASNL---VQLEAS---- 248
I + SC G + V + + S ++I +V+G +L VQL S
Sbjct: 193 IISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVC 252
Query: 249 -EYNDSSS----FVFKMDGYVSNSNY-VAKKTT--MVLFVNDRLVECAPLKRAVEIVYAA 300
EY S S +F + G++S + V + +T F+N R + A + R V VY
Sbjct: 253 EEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVY-H 311
Query: 301 TFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAV 348
+ + PF+ ++I + E VD+NV P KR++ L ++L++ +++++
Sbjct: 312 MYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSL 359
>pdb|1H7U|A Chain A, Hpms2-atpgs
pdb|1H7U|B Chain B, Hpms2-atpgs
Length = 365
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 187/348 (53%), Gaps = 24/348 (6%)
Query: 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHG 81
I ++ V++I +G+V+ +AVKELVENSLDA AT+I++ +KD G+ LI+VSD+G G
Sbjct: 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 74
Query: 82 IRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYR 141
+ E+ L +H TSK+ ++ DL +++ GFRGEAL+S+ + VT++T G R
Sbjct: 75 VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134
Query: 142 VSY--RDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQ-NSSDDYTKIVDLLSRMA 198
+ + +++ P +GT + V+ LF + R K Q N +Y K+V +L
Sbjct: 135 LMFDHNGKIIQKTPY--PRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYC 192
Query: 199 IHHTNVSFSCRK---HGAARADVHSIATSSRLDSIRTVYGVSVASNL---VQLEAS---- 248
I + SC G + V + + S ++I +V+G +L VQL S
Sbjct: 193 IISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVC 252
Query: 249 -EYNDSSS----FVFKMDGYVSNSNY-VAKKTT--MVLFVNDRLVECAPLKRAVEIVYAA 300
EY S S +F + G++S + V + +T F+N R + A + R V VY
Sbjct: 253 EEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVY-H 311
Query: 301 TFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAV 348
+ + PF+ ++I + E VD+NV P KR++ L ++L++ +++++
Sbjct: 312 MYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSL 359
>pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2
pdb|1H7S|B Chain B, N-Terminal 40kda Fragment Of Human Pms2
Length = 365
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 186/348 (53%), Gaps = 24/348 (6%)
Query: 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHG 81
I ++ V++I +G+V+ +AVKELVENSLDA AT+I++ +KD G+ LI+VSD+G G
Sbjct: 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 74
Query: 82 IRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYR 141
+ E+ L +H TSK+ ++ DL +++ GFRGEAL+S+ + VT++T G R
Sbjct: 75 VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134
Query: 142 VSY--RDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQ-NSSDDYTKIVDLLSRMA 198
+ + +++ P +GT + V+ LF + R K Q N +Y K V +L
Sbjct: 135 LXFDHNGKIIQKTPY--PRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKXVQVLHAYC 192
Query: 199 IHHTNVSFSCRK---HGAARADVHSIATSSRLDSIRTVYGVSVASNL---VQLEAS---- 248
I + SC G + V + + S ++I +V+G +L VQL S
Sbjct: 193 IISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVC 252
Query: 249 -EYNDSSS----FVFKMDGYVSNSNY-VAKKTT--MVLFVNDRLVECAPLKRAVEIVYAA 300
EY S S +F + G++S + V + +T F+N R + A + R V VY
Sbjct: 253 EEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHX 312
Query: 301 TFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAV 348
+ + PF+ ++I + E VD+NV P KR++ L ++L++ +++++
Sbjct: 313 -YNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSL 359
>pdb|4FMN|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Ntg2
pdb|4FMO|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Exo1
Length = 288
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 23/213 (10%)
Query: 435 RQRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDV--YALLQHNTHMYL 492
++R N+N LTSI++L + VD + H L DI + +++G+ D+ A +QH+ ++L
Sbjct: 23 KERVNVN----LTSIKKLREKVDDSIHRELTDIFANLNYVGVVDEERRLAAIQHDLKLFL 78
Query: 493 ANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKI 552
+ S+ EL YQ+ L FA+F I L ++++ L E + +D KEKI
Sbjct: 79 IDYGSVCYELFYQIGLTDFANFGKINLQSTNVSDDIVLYNLLSE---FDELNDDASKEKI 135
Query: 553 AEMNTELLKQKAEMLEEYFCVKIDTRGNLSRLPIILDQ--------YTPDMDRIPEFVLC 604
++ + ML EY+ +++ G + L + + Y P + ++P F+
Sbjct: 136 ISKIWDM----SSMLNEYYSIELVNDGLDNDLKSVKLKSLPLLLKGYIPSLVKLPFFIYR 191
Query: 605 LGNDVDWEDEKCCFQAIAAALGNFYAMHPPLLP 637
LG +VDWEDE+ C I + Y P ++P
Sbjct: 192 LGKEVDWEDEQECLDGILREIALLYI--PDMVP 222
>pdb|4E4W|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer
Length = 285
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 23/213 (10%)
Query: 435 RQRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDV--YALLQHNTHMYL 492
++R N+N LTSI++L + VD + H L DI + +++G+ D+ A +QH+ ++L
Sbjct: 20 KERVNVN----LTSIKKLREKVDDSIHRELTDIFANLNYVGVVDEERRLAAIQHDLKLFL 75
Query: 493 ANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKI 552
+ S+ EL YQ+ L FA+F I L ++++ L E + +D KEKI
Sbjct: 76 IDYGSVCYELFYQIGLTDFANFGKINLQSTNVSDDIVLYNLLSE---FDELNDDASKEKI 132
Query: 553 AEMNTELLKQKAEMLEEYFCVKIDTRGNLSRLPIILDQ--------YTPDMDRIPEFVLC 604
++ + ML EY+ +++ G + L + + Y P + ++P F+
Sbjct: 133 ISKIWDM----SSMLNEYYSIELVNDGLDNDLKSVKLKSLPLLLKGYIPSLVKLPFFIYR 188
Query: 605 LGNDVDWEDEKCCFQAIAAALGNFYAMHPPLLP 637
LG +VDWEDE+ C I + Y P ++P
Sbjct: 189 LGKEVDWEDEQECLDGILREIALLYI--PDMVP 219
>pdb|4F5X|W Chain W, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1089
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 409 LHAYVQSKPHTSVASGPNLSAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGLLDIV 468
+ +YVQ P +V AV S +Q + N A+L I+ ++ + N HS I+
Sbjct: 569 MDSYVQI-PDGNVIKKIQYGAVASGEKQTKAANSIANLALIKTVLSRIS-NKHSFATKII 626
Query: 469 RHCSFIGMADDVYALLQHNTHM 490
R DD YA+LQ NT +
Sbjct: 627 RVD-----GDDNYAVLQFNTEV 643
>pdb|2R7Q|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (C-
Terminal Hexahistidine-Tagged)
pdb|2R7R|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)
Complex
pdb|2R7S|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1 RNA (UGUGCC)
Complex
pdb|2R7T|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGAACC)
Complex
pdb|2R7U|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (AAAAGCC)
Complex
pdb|2R7V|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (GGCUUU)
COMPLEX
pdb|2R7W|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)MRNA
5'-Cap (M7gpppg) Complex
pdb|2R7X|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
pdb|2R7X|B Chain B, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
Length = 1095
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 409 LHAYVQSKPHTSVASGPNLSAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGLLDIV 468
+ +YVQ P +V AV S +Q + N A+L I+ ++ + N HS I+
Sbjct: 569 MDSYVQI-PDGNVIKKIQYGAVASGEKQTKAANSIANLALIKTVLSRIS-NKHSFATKII 626
Query: 469 RHCSFIGMADDVYALLQHNTHM 490
R DD YA+LQ NT +
Sbjct: 627 RVD-----GDDNYAVLQFNTEV 643
>pdb|2R7O|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (N-
Terminal Hexahistidine-Tagged)
pdb|4AU6|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|C Chain C, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|D Chain D, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|E Chain E, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1095
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 409 LHAYVQSKPHTSVASGPNLSAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGLLDIV 468
+ +YVQ P +V AV S +Q + N A+L I+ ++ + N HS I+
Sbjct: 575 MDSYVQI-PDGNVIKKIQYGAVASGEKQTKAANSIANLALIKTVLSRIS-NKHSFATKII 632
Query: 469 RHCSFIGMADDVYALLQHNTHM 490
R DD YA+LQ NT +
Sbjct: 633 RVD-----GDDNYAVLQFNTEV 649
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,336,756
Number of Sequences: 62578
Number of extensions: 732163
Number of successful extensions: 1985
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1957
Number of HSP's gapped (non-prelim): 18
length of query: 677
length of database: 14,973,337
effective HSP length: 105
effective length of query: 572
effective length of database: 8,402,647
effective search space: 4806314084
effective search space used: 4806314084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)