Query 005789
Match_columns 677
No_of_seqs 328 out of 2048
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 13:46:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1979 DNA mismatch repair pr 100.0 2E-147 4E-152 1184.8 42.7 620 18-645 4-645 (694)
2 COG0323 MutL DNA mismatch repa 100.0 3E-102 7E-107 889.6 48.9 570 19-632 1-590 (638)
3 PRK00095 mutL DNA mismatch rep 100.0 1.3E-89 2.9E-94 788.7 51.1 562 21-634 2-571 (617)
4 TIGR00585 mutl DNA mismatch re 100.0 6.2E-67 1.3E-71 557.4 30.7 306 21-333 2-312 (312)
5 KOG1978 DNA mismatch repair pr 100.0 7.1E-66 1.5E-70 568.9 34.0 535 22-608 1-606 (672)
6 KOG1977 DNA mismatch repair pr 100.0 2.1E-45 4.6E-50 400.8 13.9 307 21-355 1-311 (1142)
7 PRK14867 DNA topoisomerase VI 100.0 6.6E-31 1.4E-35 298.0 22.1 246 41-319 36-307 (659)
8 cd03483 MutL_Trans_MLH1 MutL_T 100.0 3.5E-29 7.5E-34 233.0 14.1 127 225-353 1-127 (127)
9 PF01119 DNA_mis_repair: DNA m 100.0 4.3E-28 9.2E-33 223.3 13.5 118 230-353 1-119 (119)
10 cd03482 MutL_Trans_MutL MutL_T 100.0 8E-28 1.7E-32 222.6 13.9 121 227-353 2-123 (123)
11 cd03485 MutL_Trans_hPMS_1_like 99.9 1E-26 2.2E-31 218.0 14.9 124 225-352 1-131 (132)
12 cd03486 MutL_Trans_MLH3 MutL_T 99.9 1.2E-26 2.6E-31 219.8 14.2 122 225-353 1-141 (141)
13 cd00782 MutL_Trans MutL_Trans: 99.9 8.3E-26 1.8E-30 208.6 13.7 120 227-352 2-122 (122)
14 TIGR01055 parE_Gneg DNA topois 99.9 1.9E-24 4.1E-29 248.3 24.1 177 21-211 8-204 (625)
15 cd03484 MutL_Trans_hPMS_2_like 99.9 3.3E-25 7.2E-30 210.1 14.5 127 225-352 1-141 (142)
16 PRK14868 DNA topoisomerase VI 99.9 1.3E-25 2.8E-30 255.0 13.5 202 41-270 46-272 (795)
17 smart00433 TOP2c Topoisomerase 99.9 3E-24 6.5E-29 246.3 20.2 258 43-323 3-299 (594)
18 TIGR01059 gyrB DNA gyrase, B s 99.9 5.3E-23 1.1E-27 238.7 23.9 302 21-353 5-358 (654)
19 PRK05644 gyrB DNA gyrase subun 99.9 8.7E-23 1.9E-27 235.4 25.2 285 21-332 12-343 (638)
20 PRK05559 DNA topoisomerase IV 99.9 2.5E-22 5.3E-27 231.6 24.9 279 21-322 12-334 (631)
21 PRK14939 gyrB DNA gyrase subun 99.9 9.1E-22 2E-26 228.1 22.3 277 21-322 11-334 (756)
22 PRK05218 heat shock protein 90 99.9 1.5E-20 3.3E-25 216.4 23.6 281 30-352 16-345 (613)
23 TIGR01052 top6b DNA topoisomer 99.9 2.1E-21 4.5E-26 215.3 15.8 157 40-212 27-205 (488)
24 PRK04184 DNA topoisomerase VI 99.8 3.8E-18 8.2E-23 191.3 16.3 155 42-212 37-214 (535)
25 PF08676 MutL_C: MutL C termin 99.7 1.2E-17 2.7E-22 158.5 8.6 132 471-632 3-139 (144)
26 cd00329 TopoII_MutL_Trans MutL 99.7 3.2E-17 7E-22 146.4 10.3 101 227-333 2-107 (107)
27 smart00853 MutL_C MutL C termi 99.6 1.1E-15 2.3E-20 143.6 11.7 110 471-607 2-118 (136)
28 PF13589 HATPase_c_3: Histidin 99.5 3.6E-15 7.8E-20 140.7 4.5 101 41-145 2-106 (137)
29 COG1389 DNA topoisomerase VI, 99.5 3.1E-13 6.8E-18 145.1 13.5 164 39-212 34-214 (538)
30 TIGR01058 parE_Gpos DNA topois 99.4 1E-11 2.2E-16 143.5 22.7 242 21-286 9-274 (637)
31 COG0187 GyrB Type IIA topoisom 99.4 1.4E-11 3E-16 138.1 17.4 276 20-319 9-331 (635)
32 PRK14083 HSP90 family protein; 99.3 3.1E-11 6.8E-16 138.6 19.4 281 35-352 17-325 (601)
33 PTZ00109 DNA gyrase subunit b; 99.2 5.5E-10 1.2E-14 130.7 18.5 180 21-211 104-357 (903)
34 PHA02569 39 DNA topoisomerase 99.1 3.1E-09 6.7E-14 122.5 20.2 174 22-211 4-223 (602)
35 PTZ00272 heat shock protein 83 99.1 2.7E-09 5.8E-14 124.2 19.1 150 35-201 19-199 (701)
36 PTZ00130 heat shock protein 90 99.1 3.3E-09 7.2E-14 123.8 18.8 160 33-206 80-270 (814)
37 COG0326 HtpG Molecular chapero 99.1 3.8E-09 8.2E-14 119.5 17.2 282 36-353 22-354 (623)
38 PTZ00108 DNA topoisomerase 2-l 99.0 4.7E-08 1E-12 120.0 22.8 158 40-210 56-240 (1388)
39 PLN03128 DNA topoisomerase 2; 98.9 2E-07 4.3E-12 113.6 23.4 257 38-322 49-346 (1135)
40 PLN03237 DNA topoisomerase 2; 98.8 3.2E-07 7E-12 112.5 22.4 177 22-211 32-259 (1465)
41 PF02518 HATPase_c: Histidine 98.5 2.2E-07 4.7E-12 83.6 6.7 79 40-125 4-85 (111)
42 KOG0019 Molecular chaperone (H 98.0 1.5E-05 3.2E-10 89.4 9.0 294 21-352 42-369 (656)
43 KOG0020 Endoplasmic reticulum 97.9 3.7E-05 8E-10 83.9 9.3 144 44-200 98-273 (785)
44 COG4191 Signal transduction hi 97.8 2.2E-05 4.7E-10 88.4 5.5 59 41-99 497-560 (603)
45 COG3290 CitA Signal transducti 97.8 3.6E-05 7.8E-10 86.2 6.9 79 35-124 421-505 (537)
46 TIGR02938 nifL_nitrog nitrogen 97.7 7.8E-05 1.7E-09 83.0 8.9 74 42-124 388-468 (494)
47 PRK15053 dpiB sensor histidine 97.7 0.00014 3E-09 83.4 9.6 74 42-124 433-513 (545)
48 PRK11006 phoR phosphate regulo 97.7 0.0001 2.3E-09 82.0 8.0 58 41-98 317-377 (430)
49 PRK10364 sensor protein ZraS; 97.6 0.0003 6.4E-09 79.0 10.0 58 41-98 348-408 (457)
50 PRK10604 sensor protein RstB; 97.5 0.00039 8.6E-09 77.7 10.3 77 42-124 320-397 (433)
51 cd00075 HATPase_c Histidine ki 97.5 0.00034 7.4E-09 59.6 7.4 52 43-94 2-57 (103)
52 TIGR01386 cztS_silS_copS heavy 97.5 0.00044 9.6E-09 76.7 9.9 77 42-124 354-433 (457)
53 PRK11086 sensory histidine kin 97.5 0.00044 9.6E-09 78.7 10.0 58 41-98 433-495 (542)
54 TIGR02916 PEP_his_kin putative 97.4 0.00029 6.4E-09 83.4 7.8 57 42-98 580-640 (679)
55 PRK10815 sensor protein PhoQ; 97.4 0.00035 7.6E-09 79.6 8.0 57 42-98 379-436 (485)
56 COG0642 BaeS Signal transducti 97.3 0.00033 7.2E-09 72.5 6.2 60 41-100 228-289 (336)
57 PRK10549 signal transduction h 97.3 0.001 2.2E-08 74.4 10.1 77 42-124 353-432 (466)
58 PRK10755 sensor protein BasS/P 97.3 0.001 2.2E-08 71.9 9.8 56 42-97 248-306 (356)
59 PRK09303 adaptive-response sen 97.3 0.00095 2.1E-08 73.5 9.5 58 42-99 273-334 (380)
60 PRK13837 two-component VirA-li 97.3 0.0018 3.8E-08 78.7 12.5 91 41-144 560-673 (828)
61 PRK11100 sensory histidine kin 97.3 0.0012 2.6E-08 73.6 10.2 76 42-124 369-447 (475)
62 PRK15347 two component system 97.3 0.00053 1.1E-08 83.6 8.0 58 41-98 513-572 (921)
63 PRK09470 cpxA two-component se 97.2 0.0015 3.2E-08 72.8 10.3 57 42-98 354-411 (461)
64 smart00387 HATPase_c Histidine 97.2 0.0015 3.3E-08 56.5 7.7 58 41-98 5-65 (111)
65 PRK09467 envZ osmolarity senso 97.1 0.0017 3.7E-08 72.0 9.7 56 42-97 332-388 (435)
66 PRK11073 glnL nitrogen regulat 97.1 0.0015 3.2E-08 70.2 8.4 57 42-98 238-308 (348)
67 TIGR01925 spIIAB anti-sigma F 96.9 0.0034 7.3E-08 58.6 8.1 57 40-98 38-100 (137)
68 PRK11091 aerobic respiration c 96.9 0.0031 6.8E-08 75.8 9.6 58 41-98 398-458 (779)
69 PRK10337 sensor protein QseC; 96.9 0.0036 7.9E-08 69.7 9.4 54 42-98 353-408 (449)
70 TIGR03785 marine_sort_HK prote 96.7 0.0059 1.3E-07 72.8 9.7 58 42-99 598-658 (703)
71 TIGR02966 phoR_proteo phosphat 96.7 0.007 1.5E-07 63.6 9.2 57 42-98 230-289 (333)
72 PRK11360 sensory histidine kin 96.6 0.0049 1.1E-07 70.4 8.0 57 42-98 501-561 (607)
73 PRK10618 phosphotransfer inter 96.6 0.012 2.6E-07 72.0 11.4 59 41-99 565-628 (894)
74 PRK13557 histidine kinase; Pro 96.5 0.0075 1.6E-07 68.4 9.0 57 42-98 278-352 (540)
75 PRK10490 sensor protein KdpD; 96.5 0.0088 1.9E-07 73.2 10.1 58 42-99 779-839 (895)
76 PRK09835 sensor kinase CusS; P 96.5 0.013 2.7E-07 65.9 10.5 58 41-98 375-435 (482)
77 COG3851 UhpB Signal transducti 96.4 0.013 2.8E-07 62.8 8.8 46 40-85 409-456 (497)
78 PRK10547 chemotaxis protein Ch 96.3 0.015 3.2E-07 68.7 9.6 45 44-88 388-447 (670)
79 PRK09959 hybrid sensory histid 96.3 0.0075 1.6E-07 76.0 7.7 59 41-99 828-893 (1197)
80 PRK11466 hybrid sensory histid 96.3 0.014 3.1E-07 71.3 9.9 56 42-97 562-619 (914)
81 PRK04069 serine-protein kinase 96.3 0.0097 2.1E-07 57.7 6.8 59 40-98 41-105 (161)
82 TIGR02956 TMAO_torS TMAO reduc 96.2 0.017 3.6E-07 71.0 10.0 58 41-98 579-639 (968)
83 PRK11107 hybrid sensory histid 96.1 0.019 4.2E-07 70.0 9.5 56 42-97 409-471 (919)
84 COG5002 VicK Signal transducti 96.0 0.013 2.9E-07 62.6 6.6 73 41-119 342-417 (459)
85 PRK10841 hybrid sensory kinase 96.0 0.026 5.6E-07 69.5 10.1 57 42-98 563-621 (924)
86 PRK03660 anti-sigma F factor; 96.0 0.047 1E-06 51.4 9.6 58 39-98 37-100 (146)
87 COG5000 NtrY Signal transducti 96.0 0.01 2.2E-07 67.6 5.6 59 42-100 601-669 (712)
88 COG3852 NtrB Signal transducti 96.0 0.011 2.3E-07 62.4 5.5 59 41-100 241-317 (363)
89 TIGR01924 rsbW_low_gc serine-p 95.9 0.034 7.4E-07 53.9 8.7 84 39-130 40-130 (159)
90 COG0643 CheA Chemotaxis protei 95.9 0.019 4E-07 68.2 7.7 62 25-95 425-502 (716)
91 COG4192 Signal transduction hi 95.7 0.016 3.4E-07 63.9 5.6 60 41-100 564-628 (673)
92 COG3850 NarQ Signal transducti 95.5 0.022 4.8E-07 64.0 6.1 44 42-85 482-527 (574)
93 COG2205 KdpD Osmosensitive K+ 95.5 0.022 4.8E-07 67.0 6.2 56 42-97 776-834 (890)
94 PRK11644 sensory histidine kin 95.0 0.039 8.5E-07 63.1 6.4 45 42-86 411-457 (495)
95 PF13581 HATPase_c_2: Histidin 94.6 0.1 2.2E-06 47.7 7.0 76 40-129 30-113 (125)
96 COG4585 Signal transduction hi 94.6 0.057 1.2E-06 59.1 6.1 46 41-86 279-326 (365)
97 PRK10600 nitrate/nitrite senso 94.2 0.08 1.7E-06 61.4 6.4 45 42-86 470-516 (569)
98 PRK13560 hypothetical protein; 93.4 0.12 2.5E-06 61.9 6.1 43 43-85 713-762 (807)
99 COG3920 Signal transduction hi 91.7 0.28 6.1E-06 50.2 5.4 45 41-85 122-174 (221)
100 PRK10935 nitrate/nitrite senso 91.4 0.34 7.4E-06 55.7 6.5 44 42-85 472-518 (565)
101 COG2172 RsbW Anti-sigma regula 90.5 1.7 3.7E-05 41.6 9.2 54 39-94 38-98 (146)
102 PRK13559 hypothetical protein; 90.4 0.41 8.9E-06 51.7 5.5 45 41-85 267-319 (361)
103 KOG0355 DNA topoisomerase type 90.3 0.65 1.4E-05 55.0 7.2 169 31-212 43-231 (842)
104 COG2972 Predicted signal trans 89.7 0.44 9.5E-06 54.0 5.2 50 40-89 349-405 (456)
105 COG3275 LytS Putative regulato 88.2 0.63 1.4E-05 52.1 4.8 45 40-85 455-507 (557)
106 KOG0787 Dehydrogenase kinase [ 87.3 1.4 3E-05 48.1 6.6 75 39-113 257-346 (414)
107 COG4564 Signal transduction hi 84.3 1.6 3.6E-05 46.7 5.3 47 40-86 358-406 (459)
108 COG4251 Bacteriophytochrome (l 83.2 3.6 7.7E-05 47.8 7.8 110 22-147 624-742 (750)
109 KOG1977 DNA mismatch repair pr 41.2 16 0.00035 43.0 2.0 82 467-576 909-990 (1142)
110 COG1929 Glycerate kinase [Carb 32.3 31 0.00066 37.8 2.3 80 22-125 96-175 (378)
111 KOG1845 MORC family ATPases [C 31.4 37 0.00081 40.9 3.0 57 43-99 148-216 (775)
112 PF14501 HATPase_c_5: GHKL dom 26.2 2.6E+02 0.0057 24.2 6.9 38 41-78 5-48 (100)
113 PF04025 DUF370: Domain of unk 24.9 1.1E+02 0.0023 26.0 3.8 37 41-80 20-58 (73)
114 PRK13669 hypothetical protein; 24.1 73 0.0016 27.3 2.7 44 256-301 29-72 (78)
115 PF15368 BioT2: Spermatogenesi 23.7 2.5E+02 0.0054 27.2 6.4 86 513-608 47-142 (170)
116 COG3938 Proline racemase [Amin 21.0 1.4E+02 0.0031 32.0 4.6 87 57-149 160-250 (341)
117 COG4687 Uncharacterized protei 20.5 1.5E+02 0.0032 27.2 4.0 65 170-237 36-100 (122)
No 1
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=100.00 E-value=2e-147 Score=1184.84 Aligned_cols=620 Identities=50% Similarity=0.796 Sum_probs=560.2
Q ss_pred CCcccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCCCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCC
Q 005789 18 EPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (677)
Q Consensus 18 ~~~~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (677)
.|+.|++||++|+|||||||||+||++|+|||||||||||||+|.|.+++||++++||+|||+||.++||+++|+||+||
T Consensus 4 ~~~~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 4 VPRKIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred cchhhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccccCccchhhhhhhcceEEEEEEEeCCCcceEEEEEeCCeeccccccccCCCceEEEEEeeeccchhhh
Q 005789 98 KLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARR 177 (677)
Q Consensus 98 K~~~~~dl~~i~t~GfRGeALaSIs~vs~v~I~Tr~~~~~~~~~~~~~~g~~~~~~~~~~~~~GTtV~v~dLF~n~PvRr 177 (677)
|+.+||||.+++||||||||||||++||+|+|+||++++.|||++.|.||++...|+||++.+||+|+|+|||||+|+||
T Consensus 84 KL~kFEDL~~lsTyGFRGEALASiShVA~VtV~TK~~~~~cayrasY~DGkm~~~pKpcAgk~GT~I~vedLFYN~~~Rr 163 (694)
T KOG1979|consen 84 KLTKFEDLFSLSTYGFRGEALASISHVAHVTVTTKTAEGKCAYRASYRDGKMIATPKPCAGKQGTIITVEDLFYNMPTRR 163 (694)
T ss_pred hcchhHHHHhhhhcCccHHHHhhhhheeEEEEEEeecCceeeeEEEeeccccccCCCCccCCCceEEEehHhhccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred hcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCeeeEEEEeCCCCCHHHHHHHHhChhhhccce-Eec-ccccCCCCC
Q 005789 178 KTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLV-QLE-ASEYNDSSS 255 (677)
Q Consensus 178 k~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~~~~~l~t~~~~s~~~~i~~i~G~~~~~~L~-~i~-~~~~~~~~~ 255 (677)
+.|++.++|+.+|.++|.+||+|+|+|+|+|++.|+....++|.+..+..|.|+.+||.+++++|+ ++. +.+ ..
T Consensus 164 kal~~~~EE~~ki~dlv~ryAIHn~~VsFs~rk~Gd~~~dl~t~~~~s~~D~ir~i~g~~Va~~ll~els~~~~--~~-- 239 (694)
T KOG1979|consen 164 KALRNHAEEYRKIMDLVGRYAIHNPRVSFSLRKQGDTVADLRTSVSCSREDNIRNIYGVSVAKNLLNELSKCDS--KL-- 239 (694)
T ss_pred HHhcCcHHHHHHHHHHHHHHheeCCCcceEEeeccccccccccCCccccccchhhhhhhHHHHHHHHHhhhccC--ce--
Confidence 999999999999999999999999999999999999899999999999999999999999999998 665 433 33
Q ss_pred cceEEEEEEeCCCCCCCCceEEEEEcCeecCChhHHHHHHHHHhhcCCCCCCceEEEEEEcCCCccccccCCCCCeEecC
Q 005789 256 FVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLL 335 (677)
Q Consensus 256 ~~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~ 335 (677)
..|+++|||+++++..++....+|||||+|+|..|+++|+.+|+.+||++.+||+||+|.++|+.|||||||||+||+|+
T Consensus 240 l~f~~~g~Isn~n~~akk~i~vlFIN~RLVes~~Lr~ale~VYa~yLpk~~~pFvYLsL~i~p~~vDVNVHPTK~eV~FL 319 (694)
T KOG1979|consen 240 LKFSAEGYISNANYSAKKSILVLFINGRLVESDELRHALEEVYAAYLPKGHHPFVYLSLNIDPENVDVNVHPTKREVHFL 319 (694)
T ss_pred eEEeccceEechhhhhhhheEEEEEcCcEeehHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHcccccCCCcceeEee
Confidence 67899999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCCCCCCCC--CCCCCCCCCccccCCCCcceecCCCCCCccccccc
Q 005789 336 NQELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSPYNPSK--DLHLNPSGSKLQKVPVNKMVRTDSSDPAGRLHAYV 413 (677)
Q Consensus 336 ~e~~I~~~I~~~l~~~L~~~~~~r~~~~q~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~vr~d~~~~~~~l~~~~ 413 (677)
++++|++.|++.++..|+..+.+|+|..|.+.|........++ +...+++.+.+.+.+++++||||++ +++|++|+
T Consensus 320 ~qEeIie~I~~~ie~~L~~~d~er~~~~q~~iP~~~~~~~er~~~~~~~~~s~~ks~k~~~~~mVRtDss--e~ki~~fl 397 (694)
T KOG1979|consen 320 NQEEIIERICQQIEERLSALDTERTFLKQVMIPGPSTLKSERNKPSLKQSPSAQKSDKRYENKMVRTDSS--ERKIDSFL 397 (694)
T ss_pred cHHHHHHHHHHHHHHHHhccCcccchhhhhcccCCccccccccCccccccccccccchhcccceeecccc--ccchhhhh
Confidence 9999999999999999999999999999999987653322211 1122445666678899999999999 89999999
Q ss_pred ccCCC---CC-CCCC-----CCccc--c----chhhh---hhccccccccccchHHHHHHhhhhcCCcccccccccEEEE
Q 005789 414 QSKPH---TS-VASG-----PNLSA--V----RSSVR---QRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIG 475 (677)
Q Consensus 414 ~~~~~---~s-~~~~-----~~~~~--~----~~~~~---~~~~~~~~~~l~Sv~~L~~~v~~~~~~~l~~~~~~~~~VG 475 (677)
..... ++ ..++ .+..+ . .+.+. ..+++++..+|+||+.|+++|.+++|..++++|++|+|||
T Consensus 398 ~~~~~~~~s~~~~nes~~~~~s~~~~e~s~~p~dd~r~~~~~~~~rE~~~L~Si~~Lr~eV~~~~h~~l~e~~~n~~yVG 477 (694)
T KOG1979|consen 398 SPLTQVGSSNSTGNESEQGDDSSLSNENSRLPEDDVRFEYTAKTPRERFRLESIKKLRKEVIDSCHVVLTEMFRNLSYVG 477 (694)
T ss_pred CCccccCcccccccccccccccccccccccCccchhhhhhccccchhccchhhHHHHHHHHHhhccHHHHHHHHhcceee
Confidence 54331 11 0000 00000 0 00111 1123333399999999999999999999999999999999
Q ss_pred EEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHhcCcCeEecCCCcChhHHHhhhccccccccccCcCchhHHHHHHH
Q 005789 476 MADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAEM 555 (677)
Q Consensus 476 ~vd~~yiLiQ~~~~LyLIDqhaahEei~YQ~~l~~fgn~~~q~L~~P~~l~~Ll~l~l~~~~~~~~~~~~~~~~~~~~~~ 555 (677)
+||++++|+||+++||+||+..+++|+|||+++.+||||+.++|++|+++.+|++++++.+ +++|+++|++++.+++.
T Consensus 478 ~vd~~~alvQh~t~Ly~~d~~~ls~ElfYQi~i~dF~Nfg~~~l~~p~~l~el~~l~l~~e--~~~~~~~d~~ke~~~~~ 555 (694)
T KOG1979|consen 478 VVDERTALVQHGTSLYLCDTVSLSKELFYQILITDFGNFGKIRLSEPLPLSELLMLALESE--EPGWTADDGFKEKIARF 555 (694)
T ss_pred eechhhhhhhcCceEEEechHHHHHHHHHHHHHHHhcccceeecCCCccHHHHHHHhccCc--cCCCCccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998765 47999999999999999
Q ss_pred HHHHHHHHHHHHhhhcceEEeeCCCeeccCcccCCCCCCCCCHHHHHHHhcCCCCCchHHHHHHHHHHHHhhccccCCCC
Q 005789 556 NTELLKQKAEMLEEYFCVKIDTRGNLSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAMHPPL 635 (677)
Q Consensus 556 ~~~~L~~~~emL~eYFgi~Ie~~G~L~siP~lL~~y~P~~~~Lp~fl~~La~~v~w~~E~~cf~~i~r~lA~fys~~~~~ 635 (677)
+++.|.++++||.|||||+|+++|.|.+||+|+++|.|++++||.|++||+++|||++|++||++|||++|.||+..+..
T Consensus 556 ~~e~l~~ka~ml~dYFsi~i~e~g~l~~lP~L~~~y~P~le~lP~fi~rL~~~vdwedEk~cf~~i~r~ia~fY~~~t~~ 635 (694)
T KOG1979|consen 556 AAEKLLEKADMLHDYFSIEIDEEGLLTGLPSLLHQYIPPLEKLPFFILRLGKEVDWEDEKECFEGICRAIATFYTLDTSS 635 (694)
T ss_pred HHHHHhhhHHHHhhheEEEEccCCceecCchhhcccCCChhhCcHHHHhhccccchHHHHHHHHHHHHHHHHHhccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999755544
Q ss_pred CCCCCCCcce
Q 005789 636 LPNPSGEGLQ 645 (677)
Q Consensus 636 ~~~~~~~~~~ 645 (677)
.+-...+|..
T Consensus 636 ~~ls~~e~a~ 645 (694)
T KOG1979|consen 636 AQLSEVEGAT 645 (694)
T ss_pred cccccccccc
Confidence 3333334433
No 2
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.3e-102 Score=889.57 Aligned_cols=570 Identities=31% Similarity=0.441 Sum_probs=440.5
Q ss_pred CcccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCCCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 19 PPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 19 ~~~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
|+.|++||++++|||||||||+||++|||||||||||||||.|+|.++.||+.+|+|.|||+||+++|++++|.||+|||
T Consensus 1 M~~Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 1 MPKIRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred CCcceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 45599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCccchhhhhhhcceEEEEEEEeCCCcceEEEEEeCCeeccccccccCCCceEEEEEeeeccchhhhh
Q 005789 99 LSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRK 178 (677)
Q Consensus 99 ~~~~~dl~~i~t~GfRGeALaSIs~vs~v~I~Tr~~~~~~~~~~~~~~g~~~~~~~~~~~~~GTtV~v~dLF~n~PvRrk 178 (677)
|.+++||..+.|||||||||+|||+||+|+|+||+.+...||++.+++|.+....++++.+.||||.|+|||||+|+|||
T Consensus 81 I~~~~DL~~I~TlGFRGEAL~SIasVsrlti~Srt~~~~~~~~~~~~g~~~~~~~~p~a~~~GTtVeV~dLF~NtPaRrK 160 (638)
T COG0323 81 IASLEDLFRIRTLGFRGEALASIASVSRLTITSRTAEASEGTQIYAEGGGMEVTVKPAAHPVGTTVEVRDLFYNTPARRK 160 (638)
T ss_pred CCchhHHHHhhccCccHHHHHHHHhhheeEEEeecCCcCceEEEEecCCcccccccCCCCCCCCEEEehHhhccChHHHH
Confidence 99999999999999999999999999999999999998999999999998763467788889999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCeee-EEEEeCCCCCHHHHHHHHhChhhhccceEecccccCCCCCcc
Q 005789 179 TLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAAR-ADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFV 257 (677)
Q Consensus 179 ~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~~~-~~l~t~~~~s~~~~i~~i~G~~~~~~L~~i~~~~~~~~~~~~ 257 (677)
++|+.+.|+.+|.++|++|||+||+|+|+|..+|+.. ....++++++..++++.|||..+++++++++... .+
T Consensus 161 flks~~~E~~~i~~vv~r~ALahp~I~F~l~~~gk~~~~~~~~~~~~~~~~ri~~i~G~~~~~~~l~i~~~~------~~ 234 (638)
T COG0323 161 FLKSEKTEFGHITELINRYALAHPDISFSLSHNGKLRIELLKLPGTGDLEERIAAVYGTEFLKNALPIENEH------ED 234 (638)
T ss_pred hhcccHHHHHHHHHHHHHHHhcCCCeEEEEEECCceeeEEEecCCCCcHHHHHHHHhCHHHHHhhcccccCC------Cc
Confidence 9999999999999999999999999999999999532 5566778888888999999999999999988765 78
Q ss_pred eEEEEEEeCCCCC-CCCceEEEEEcCeecCChhHHHHHHHHHhhcCCCCCCceEEEEEEcCCCccccccCCCCCeEecCC
Q 005789 258 FKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLN 336 (677)
Q Consensus 258 ~~v~G~is~~~~~-~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~ 336 (677)
+++.||++.|.++ .++..||+|||||+|.++.|.+||.++|+.++|.++||+|||+|+|+|..|||||||+|+||+|++
T Consensus 235 ~~l~G~v~~P~~~r~~~~~q~~fVNgR~V~~~~l~~Ai~~aY~~~L~~~r~P~~vL~l~l~p~~vDVNVHP~K~EVrf~~ 314 (638)
T COG0323 235 LRLSGYVSLPEFTRASRDYQYLFVNGRPVRDKLLNHALREAYADYLPRGRYPVFVLFLELDPELVDVNVHPAKKEVRFSD 314 (638)
T ss_pred eEEEEEecccccccCCccceEEEECCCEeccHHHHHHHHHHHHhhccCCCCcEEEEEEeeChhhcccccCCCcceEEecC
Confidence 9999999999755 347889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCccccc-ccccCCCCCCCCCCCCCCCCCCCCccccCCCCcceecCCCCCCccccccccc
Q 005789 337 QELIVEKIQSAVELKLRQSNDSRTYKE-QTVESSPSSPYNPSKDLHLNPSGSKLQKVPVNKMVRTDSSDPAGRLHAYVQS 415 (677)
Q Consensus 337 e~~I~~~I~~~l~~~L~~~~~~r~~~~-q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~d~~~~~~~l~~~~~~ 415 (677)
++.|.++|+++|.++|........-.. ++ +............ .+ ..... .....+..+... ..........
T Consensus 315 ~~~i~~~I~~~I~~~L~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~-~~~~~--~~~~~~~~~~~~-~~~~~~~~~~ 386 (638)
T COG0323 315 ERLVHDLIYEAIKEALAQQGLIPPASVEAP--KSASQPLPAFQEP--SP-LPESR--IQKSKVAKSGSS-KSDAPSIAEP 386 (638)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCccccccc--ccccccccccccC--cc-ccccc--ccccccccccCC-cccccccccc
Confidence 999999999999999988765432000 00 0000000000000 00 00000 000000000000 0000000000
Q ss_pred CCCCCCC--CC----CC--ccccch--hhhhhccccccccccchHHHH--HHhhhhcCCcccccccccEEEEEEcCcEEE
Q 005789 416 KPHTSVA--SG----PN--LSAVRS--SVRQRRNLNETADLTSIQELI--DDVDRNCHSGLLDIVRHCSFIGMADDVYAL 483 (677)
Q Consensus 416 ~~~~s~~--~~----~~--~~~~~~--~~~~~~~~~~~~~l~Sv~~L~--~~v~~~~~~~l~~~~~~~~~VG~vd~~yiL 483 (677)
....+.+ .. .+ ...... ..............++..+.. .+....... .+.++.+.++||++++|+|
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~i~q~~~~yil 464 (638)
T COG0323 387 ASGASPSPASPSIRPLSKNILPESSPGSLKNEDRSYDDLLEEPAESEDKQEEAEQKAIS--EDVFPLGEAIGQVHGTYIL 464 (638)
T ss_pred cccCCccccccccccccccccccccccccchhcccccccccccchhccccccccccccc--ccccccceEEEEecceEEE
Confidence 0000000 00 00 000000 000000000000000000000 000011111 1577889999999999999
Q ss_pred EEECCeEEEEechhHHHHHHHHHHHHHhcCc-CeEecCCCcChhHHHhhhccccccccccCcCchhHHHHHHHHHHHHHH
Q 005789 484 LQHNTHMYLANVVSLSKELMYQLVLRRFAHF-NAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQ 562 (677)
Q Consensus 484 iQ~~~~LyLIDqhaahEei~YQ~~l~~fgn~-~~q~L~~P~~l~~Ll~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 562 (677)
+|++++||||||||||||++||++...+++. ..|.|+.|..+. +.. .+...+.+
T Consensus 465 ~e~~~~L~lvDqhaa~Eri~ye~l~~~~~~~~~~Q~LliP~~~~------l~~-------------------~e~~~~~~ 519 (638)
T COG0323 465 AEHEDGLVLVDQHAAHERILYEKLKNELGNVGELQPLLIPIRLE------LSP-------------------EEADVLEE 519 (638)
T ss_pred EEeCCCEEEEEhHHhHHHHHHHHHHHHhcccccccccccCeeee------cCH-------------------HHHHHHHH
Confidence 9999999999999999999999999999887 678899888877 421 26778999
Q ss_pred HHHHHhhhcceEEeeCCC----eeccCcccCCCCCCCCCHHHHHHHhcCCCCCchHHHHHHHHHHHHhhccccC
Q 005789 563 KAEMLEEYFCVKIDTRGN----LSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAMH 632 (677)
Q Consensus 563 ~~emL~eYFgi~Ie~~G~----L~siP~lL~~y~P~~~~Lp~fl~~La~~v~w~~E~~cf~~i~r~lA~fys~~ 632 (677)
+.+.|.+ +||+|+.+|. |+++|.+|...... ..+.+++..+.+ ..-..-+.-.+.++..+||-.|+.
T Consensus 520 ~~~~l~~-~G~~i~~~g~~~~~v~~vP~~l~~~~~~-~~i~~l~~~~~~-~~~~~~~~~~~~~~a~~aC~~svk 590 (638)
T COG0323 520 HKEELEK-LGFEIESFGENSVAVRSVPAMLGKAEVQ-ELIRELLDDLLE-GKLKDLKELLEELAATMACRSAVK 590 (638)
T ss_pred HHHHHHh-cCEEEEEcCCceEEEEecChhhcccchH-HHHHHHHHHhhc-ccccchhHHHHHHHHHHHHHHhhh
Confidence 9999999 7999999886 99999999998776 778888888876 555555556788888888888763
No 3
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=100.00 E-value=1.3e-89 Score=788.71 Aligned_cols=562 Identities=29% Similarity=0.432 Sum_probs=425.8
Q ss_pred ccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCCCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCCCcc
Q 005789 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~ 100 (677)
+|++||++|+++|||||||++|+++||||||||||||||.|.|.+..+|..+|+|+|||+||+++|++.+|.||+|||+.
T Consensus 2 ~I~~L~~~v~~~IaAgevI~~~~svvkElveNsiDAgat~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~ 81 (617)
T PRK00095 2 PIQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATSKIA 81 (617)
T ss_pred CceECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCCCCEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCC
Confidence 59999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred cccccccccccCccchhhhhhhcceEEEEEEEeCCCcceEEEEEeCCeeccccccccCCCceEEEEEeeeccchhhhhcc
Q 005789 101 KYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTL 180 (677)
Q Consensus 101 ~~~dl~~i~t~GfRGeALaSIs~vs~v~I~Tr~~~~~~~~~~~~~~g~~~~~~~~~~~~~GTtV~v~dLF~n~PvRrk~l 180 (677)
+++|+.++.|+|||||||+||++||+|+|+||+.++..||++.|.+|++. ...++++++||+|+|+|||||+|+|||++
T Consensus 82 ~~~dl~~~~t~GfrGeAL~sI~~vs~l~i~s~~~~~~~~~~~~~~~G~~~-~~~~~~~~~GT~V~v~~LF~n~P~Rrkfl 160 (617)
T PRK00095 82 SLDDLEAIRTLGFRGEALPSIASVSRLTLTSRTADAAEGWQIVYEGGEIV-EVKPAAHPVGTTIEVRDLFFNTPARRKFL 160 (617)
T ss_pred ChhHhhccccCCcchhHHHhhhhceEEEEEEecCCCCceEEEEecCCcCc-ceecccCCCCCEEEechhhccCcHHHHhc
Confidence 99999999999999999999999999999999998889999999999876 35566778999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhcCCCeEEEEEECCeeeEEEEeCCCCCHHHHHHHHhChhhhccceEecccccCCCCCcceEE
Q 005789 181 QNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKM 260 (677)
Q Consensus 181 ~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~~~~~l~t~~~~s~~~~i~~i~G~~~~~~L~~i~~~~~~~~~~~~~~v 260 (677)
++.+.++.+|.++|++||++||+|+|+|.+++ +..|++.+.+++.+++..+||..+..++++++.+. .++++
T Consensus 161 k~~~~e~~~i~~~v~~~Al~~p~i~f~l~~~~--~~~~~~~~~~~~~~~i~~i~g~~~~~~l~~~~~~~------~~~~i 232 (617)
T PRK00095 161 KSEKTELGHIDDVVNRLALAHPDVAFTLTHNG--KLVLQTRGAGQLLQRLAAILGREFAENALPIDAEH------GDLRL 232 (617)
T ss_pred cCcHHHHHHHHHHHHHHhhcCCCcEEEEEECC--EEEEEeCCCCCHHHHHHHHhCHHhHhheEEEeccC------CCEEE
Confidence 99899999999999999999999999999988 66788988899999999999999999999998766 67999
Q ss_pred EEEEeCCCCC-CCCceEEEEEcCeecCChhHHHHHHHHHhhcCCCCCCceEEEEEEcCCCccccccCCCCCeEecCChhH
Q 005789 261 DGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQEL 339 (677)
Q Consensus 261 ~G~is~~~~~-~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~ 339 (677)
+||++.|.+. +++..||+|||||+|.++.|.++|+++|+.++++++||+++|+|+|||+.|||||||+|++|+|.+|+.
T Consensus 233 ~g~is~p~~~~~~~~~~~~fvN~R~v~~~~l~~ai~~~y~~~~~~~~~P~~~l~i~~~~~~~DvNvhP~K~ev~f~~e~~ 312 (617)
T PRK00095 233 SGYVGLPTLSRANRDYQYLFVNGRYVRDKLLNHAIRQAYHDLLPRGRYPAFVLFLELDPHQVDVNVHPAKHEVRFRDERL 312 (617)
T ss_pred EEEEeCcccccCCCcceEEEECCcEecCHHHHHHHHHHHHHhccCCCCcEEEEEEEeChHhcccccCCCcCEEEeCCHHH
Confidence 9999998665 347889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcccccccccCCCCCCCCCCCCCCCCCCCCccccCCCCcceecCCCCCCcccc-cccccCCC
Q 005789 340 IVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSPYNPSKDLHLNPSGSKLQKVPVNKMVRTDSSDPAGRLH-AYVQSKPH 418 (677)
Q Consensus 340 I~~~I~~~l~~~L~~~~~~r~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~d~~~~~~~l~-~~~~~~~~ 418 (677)
|++.|+++|+++|...+...... .. +.......... ....+.............. .... +..... .+.....
T Consensus 313 i~~~i~~~i~~~l~~~~~~~~~~--~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~- 385 (617)
T PRK00095 313 VHDLIVQAIQEALAQSGLIPAAA--GA-NQVLEPAEPEP-LPLQQTPLYASGSSPPASS-PSSA-PPEQSEESQEESSA- 385 (617)
T ss_pred HHHHHHHHHHHHHhccCCCcccc--cc-ccccccccccc-ccccccccCcccccccccc-cccc-cccccccccccccc-
Confidence 99999999999997643221110 00 00000000000 0000000000000000000 0000 000000 0000000
Q ss_pred CCCCCCCCccccchhhhhhccccccccccchHHHHHHhhhhcCCcccccccccEEEEEEcCcEEEEEECCeEEEEechhH
Q 005789 419 TSVASGPNLSAVRSSVRQRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNTHMYLANVVSL 498 (677)
Q Consensus 419 ~s~~~~~~~~~~~~~~~~~~~~~~~~~l~Sv~~L~~~v~~~~~~~l~~~~~~~~~VG~vd~~yiLiQ~~~~LyLIDqhaa 498 (677)
............. ... ............. ..... ......+.++.+.+|||++++|||+|++++|||||||||
T Consensus 386 ~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~vigQv~~~YIl~e~~~~L~iIDQHAA 458 (617)
T PRK00095 386 EKNPLQPNASQSE-AAA--AASAEAAAAAPAA---APEPA-EAAEEADSFPLGYALGQLHGTYILAENEDGLYLVDQHAA 458 (617)
T ss_pred ccccccccccccc-ccc--ccccccccccccc---ccccc-ccccccccCcCceEeEEEcCEEEEEEeCCcEEEEEHHHH
Confidence 0000000000000 000 0000000000000 00000 000012344567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC--cCeEecCCCcChhHHHhhhccccccccccCcCchhHHHHHHHHHHHHHHHHHHHhhhcceEEe
Q 005789 499 SKELMYQLVLRRFAH--FNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVKID 576 (677)
Q Consensus 499 hEei~YQ~~l~~fgn--~~~q~L~~P~~l~~Ll~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~emL~eYFgi~Ie 576 (677)
|||++||++++++.+ ..+|.|+.|+.++ +.. .+.+++.++.+.|.+ +||+++
T Consensus 459 hERI~yE~l~~~~~~~~~~~Q~LL~P~~l~------Ls~-------------------~e~~~l~~~~~~L~~-lGf~~e 512 (617)
T PRK00095 459 HERLLYEQLKDKLAEVGLASQPLLIPLVLE------LSE-------------------DEADRLEEHKELLAR-LGLELE 512 (617)
T ss_pred HHHHHHHHHHHHhccCCCcccccccCeEEe------eCH-------------------HHHHHHHHHHHHHHh-CCcEEE
Confidence 999999999999854 7789999999988 422 267889999999999 799999
Q ss_pred eCCC----eeccCcccCCCCCCCCCHHHHHHHhcCCCCCchHHHHHHHHHHHHhhccccCCC
Q 005789 577 TRGN----LSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAALGNFYAMHPP 634 (677)
Q Consensus 577 ~~G~----L~siP~lL~~y~P~~~~Lp~fl~~La~~v~w~~E~~cf~~i~r~lA~fys~~~~ 634 (677)
.+|. |+++|.+|..-.+. +.|.+++..|...-. ....+-. .++..+||-.|+..-
T Consensus 513 ~fg~~si~I~~vP~~l~~~~~~-~~l~ell~~l~~~~~-~~~~~~~-~~las~ACr~AIk~g 571 (617)
T PRK00095 513 PFGPNSFAVREVPALLGQQELE-ELIRDLLDELAEEGD-SDTLKER-ELLATMACHGAIRAG 571 (617)
T ss_pred EcCCCEEEEEecChhhcccCHH-HHHHHHHHHHHhcCC-cchHHHH-HHHHHHHHHHhhhcc
Confidence 9876 99999998876654 667777777654211 1111222 677888888876433
No 4
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.2e-67 Score=557.35 Aligned_cols=306 Identities=44% Similarity=0.690 Sum_probs=280.8
Q ss_pred ccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCCCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCCCcc
Q 005789 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~ 100 (677)
+|++||++++++|+||++|.+|.+||+|||+||+||||+.|.|.+..+|...|+|.|||.||++++++.+|++|+|||+.
T Consensus 2 ~I~~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~ 81 (312)
T TIGR00585 2 TIKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATSKIQ 81 (312)
T ss_pred cCeECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHCCCCEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCC
Confidence 59999999999999999999999999999999999999999999998887779999999999999999999999999999
Q ss_pred cccccccccccCccchhhhhhhcceEEEEEEEe-CCCcceEEEEEeCCeeccccccccCCCceEEEEEeeeccchhhhhc
Q 005789 101 KYEDLQSIKSMGFRGEALASMTYVGHVTVTTIT-KGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKT 179 (677)
Q Consensus 101 ~~~dl~~i~t~GfRGeALaSIs~vs~v~I~Tr~-~~~~~~~~~~~~~g~~~~~~~~~~~~~GTtV~v~dLF~n~PvRrk~ 179 (677)
+++|+..+.++|||||||+||+++|+|+|+||+ ++..++|++..+ |....+..+++.++||+|+|+|||||+|+|+++
T Consensus 82 ~~~~~~~~~~~G~rG~al~si~~~s~~~i~S~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~GTtV~v~~lf~n~p~r~~~ 160 (312)
T TIGR00585 82 SFEDLERIETLGFRGEALASISSVSRLTITTKTSAADGLAWQALLE-GGMIEEIKPAPRPVGTTVEVRDLFYNLPVRRKF 160 (312)
T ss_pred ChhHhhcccccCccchHHHHHHhhCcEEEEEeecCCCcceEEEEEC-CCcCcccccccCCCccEEEEchhhccCchhhhh
Confidence 999999999999999999999999999999999 788889998844 443324456778999999999999999999998
Q ss_pred ccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCeeeEEEEeCCCCCHHH-HHHHHhChhhhccceEecc-cccCCCCCcc
Q 005789 180 LQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLD-SIRTVYGVSVASNLVQLEA-SEYNDSSSFV 257 (677)
Q Consensus 180 l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~~~~~l~t~~~~s~~~-~i~~i~G~~~~~~L~~i~~-~~~~~~~~~~ 257 (677)
+++.+.++.+|++++++||++||+|+|.|..+|+....+.+.+..++.+ ++.++||..++++|+++.. .. .+
T Consensus 161 ~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~~~~l~~~~~~~~------~~ 234 (312)
T TIGR00585 161 LKSPKKEFRKILDLLNRYALIHPDVSFSLTHDGKKVLQLSTKPNQSLKERRIRSVFGTAVLSKLFPLLEWED------GD 234 (312)
T ss_pred ccCcHHHHHHHHHHHHHHhhcCCCeEEEEEECCEEEEEEcCCCCCCHHHHHHHHHhChHhHhhceeeecccC------CC
Confidence 8888999999999999999999999999999986555555555788999 6999999999999999973 33 67
Q ss_pred eEEEEEEeCCCCCCC-Cce-EEEEEcCeecCChhHHHHHHHHHhhcCCCCCCceEEEEEEcCCCccccccCCCCCeEe
Q 005789 258 FKMDGYVSNSNYVAK-KTT-MVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVS 333 (677)
Q Consensus 258 ~~v~G~is~~~~~~~-k~~-q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNVhPtK~eV~ 333 (677)
++++||++.|....+ +.. ||+|||||||.++.|.++|+++|+.++|+++||+++|+|+|||..+||||||+|+||+
T Consensus 235 ~~v~G~is~p~~~~~~~~~~q~ifvNgR~v~~~~l~k~I~~~y~~~~~~~~~P~~vL~i~~p~~~iDvNv~P~K~eV~ 312 (312)
T TIGR00585 235 LQLEGFISEPNVTRSRRSGWQFLFINGRPVELKLLLKAIREVYHEYLPKGQYPVFVLNLEIDPELVDVNVHPDKKEVR 312 (312)
T ss_pred EEEEEEEcCcccccCCCCcceEEEECCcEecchHHHHHHHHHHHHhccCCCCcEEEEEEEEChHHcccCCCCCchhhC
Confidence 999999999987654 345 9999999999999999999999999999999999999999999999999999999985
No 5
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=100.00 E-value=7.1e-66 Score=568.86 Aligned_cols=535 Identities=24% Similarity=0.338 Sum_probs=385.2
Q ss_pred cccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCCCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCCCccc
Q 005789 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSK 101 (677)
Q Consensus 22 I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~ 101 (677)
|++|+++++.||.+|+||.++++|||||||||||||||.|.|.+++.|..+|+|.|||+||+..|++-+|+.|+|||+.+
T Consensus 1 Ik~i~~~tvhrI~S~qvI~sl~sAVKELvENSiDAGAT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~~ 80 (672)
T KOG1978|consen 1 IKQIPKDTVHRICSSQVITSLVSAVKELVENSIDAGATAIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKHTTSKIVS 80 (672)
T ss_pred CCCCChhhhhccccCCeeccHHHHHHHHHhcCcccCCceeeEecCCCCcceEEEecCCCCCCccchhhhhhhhhhhcccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCccchhhhhhhcceEEEEEEEeCCCcceEEEEEe-CCeeccccccccCCCceEEEEEeeeccchhhhhcc
Q 005789 102 YEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYR-DGVMESEPKACAAVKGTQIMVENLFYNMIARRKTL 180 (677)
Q Consensus 102 ~~dl~~i~t~GfRGeALaSIs~vs~v~I~Tr~~~~~~~~~~~~~-~g~~~~~~~~~~~~~GTtV~v~dLF~n~PvRrk~l 180 (677)
|.|+..+.|||||||||.|+|++|.|+|.||+.+.+.|.++.|+ +|.+. ..++++.+.||||.|++||.|+|||||.+
T Consensus 81 f~Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~-~k~~~ar~~GTTV~v~~LF~tLPVR~kef 159 (672)
T KOG1978|consen 81 FADLAVLFTLGFRGEALSSLCALGDVMISTRSHSAKVGTRLVYDHDGHII-QKKPVARGRGTTVMVRQLFSTLPVRRKEF 159 (672)
T ss_pred hhhhhhhhhhhhHHHHHHhhhhccceEEEEeeccCccceeEEEccCCcee-eeccccCCCCCEEEHhhhcccCCCchHHh
Confidence 99999999999999999999999999999999999999999995 78887 57789999999999999999999999977
Q ss_pred -cCCchhHHHHHHHHHHHHhcCCCeEEEEEE---CCeeeEEEEeCCCCCHHHHHHHHhChhhhccceEecccccCCCCCc
Q 005789 181 -QNSSDDYTKIVDLLSRMAIHHTNVSFSCRK---HGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSF 256 (677)
Q Consensus 181 -~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~---~g~~~~~l~t~~~~s~~~~i~~i~G~~~~~~L~~i~~~~~~~~~~~ 256 (677)
++.++++.+++.+++.||+++++|.|.|.+ .+...+.+++.+.++..+.++++||...++.|.++..-+ .
T Consensus 160 ~r~~Kref~k~i~li~~y~li~~~ir~~~~n~t~~~~k~iil~t~~~~~~k~~i~svfg~~~~~~l~p~~~is------~ 233 (672)
T KOG1978|consen 160 QRNIKRKFVKLISLIQAYALISTAIKFLVSNSTLAGKKNIILKTGGYGSDKINISSNFGSVEEENLEPLIFIS------S 233 (672)
T ss_pred hcchhhhhhhHHhhHHHHHhhcccceeeeeeccccCCceeEEecCCcchHHHHHHhhhhhhhhhccccccccc------c
Confidence 478899999999999999999999999987 355678999999999999999999999998887775211 1
Q ss_pred ceEEEEEEeCCCCCCCCceEEEEEcCeecCChhHHHHHHHHHhhcCCCCCCceEEEEEEcCCCccccccCCCCCeEecCC
Q 005789 257 VFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLN 336 (677)
Q Consensus 257 ~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~ 336 (677)
...-. ..+....||+|||+|||+.+.+.++|+.+|+.|..+ .| |+|.+|.+.+||||.|+|+.|.|.+
T Consensus 234 ~~~g~-------~r~s~drqf~fIn~Rpv~~~~i~~~inevy~~~~~~-q~----l~i~V~~~~iDvNvtPDK~~vll~~ 301 (672)
T KOG1978|consen 234 CHHGC-------GRSSEDRQFIFINRRPVFPSDICRVINEVYKLYNER-QY----LFLDVPEGCIDVNVTPDKRQVLLSN 301 (672)
T ss_pred ccccc-------cccCccceeeeecCccCCHHHHHHHHHHHhhhhccc-cc----eeeeccccceeeeeCCCcceeeccc
Confidence 11111 122356799999999999999999999999988643 33 9999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCCC-----CCCCCCCCC--CCC--CCcc--cc-CCCCcceecCCC-
Q 005789 337 QELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSP-----YNPSKDLHL--NPS--GSKL--QK-VPVNKMVRTDSS- 403 (677)
Q Consensus 337 e~~I~~~I~~~l~~~L~~~~~~r~~~~q~~~~~~~~~-----~~~~~~~~~--~~~--~~~~--~~-~~~~~~vr~d~~- 403 (677)
|..++..+++.+..++....... +....+.|..... .+...+... ..+ .... .. .+.++.+..+..
T Consensus 302 e~~vl~~l~~~l~~~~~s~~~~~-~~~~s~~p~k~~~s~~~~s~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~ 380 (672)
T KOG1978|consen 302 ERSVLFSLRNSLVDFYNSNCDLN-FSDVSMLPVQNPSSLTERSDPIENKLVSRTDSMIGIKTNISEDHPNEESNFLTPEF 380 (672)
T ss_pred hHHHHHHHHHHHHHHHhhccccc-cccccccCccCCCccccccccchhhhcccchhhhccccccccCCCcccccccCccc
Confidence 99999999999999997432221 1111111111000 000000000 000 0000 00 000000000000
Q ss_pred ----CCC----cc----cccccc-cC--------------CC-CCCCCCCC-c----cccch--hhhhhcccc-------
Q 005789 404 ----DPA----GR----LHAYVQ-SK--------------PH-TSVASGPN-L----SAVRS--SVRQRRNLN------- 441 (677)
Q Consensus 404 ----~~~----~~----l~~~~~-~~--------------~~-~s~~~~~~-~----~~~~~--~~~~~~~~~------- 441 (677)
.|+ .. ++.... .. .. ++....+. . ....+ ....+...+
T Consensus 381 ~~~~~pd~~~~~~s~~d~~~~~~~~~~~~~~~~~~~~~~~ed~~~~~t~s~~~~se~~~~se~~~~~~~~~~~~~~~~~~ 460 (672)
T KOG1978|consen 381 LKITTPDKEKECSSKKDLTAIPLEKNPSLKKPDLEDTENLEDETNVETPSSSPLSEDKSLSEQEKLKIEVYSKIKFARKA 460 (672)
T ss_pred ccccCCcccccccCCCCccccccccCccccccchhhhhhccccccccCCCcccchhhccccccchhhhccccchhhhccc
Confidence 000 00 000000 00 00 00000000 0 00000 000000000
Q ss_pred --ccccccchHHHHHHhhhhcCCc-ccccccccEEEEEEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHhcCcCeEe
Q 005789 442 --ETADLTSIQELIDDVDRNCHSG-LLDIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQ 518 (677)
Q Consensus 442 --~~~~l~Sv~~L~~~v~~~~~~~-l~~~~~~~~~VG~vd~~yiLiQ~~~~LyLIDqhaahEei~YQ~~l~~fgn~~~q~ 518 (677)
...+.. +. .+++...+.+ -...|..+..|||.+..+|++..+..|+||||||+.|.+.|+.+++.+. +..|.
T Consensus 461 ~~~~~~~~--~N--~~~e~~~s~~v~k~df~~meiigqfNlgFIi~~l~~dlfIvdqha~dEk~Nfe~l~~~~~-L~~Q~ 535 (672)
T KOG1978|consen 461 SETKINPG--HN--DSVELEESREVAKADFSRMEIIGQFNLGFIIVKLEKDLFIVDQHASDEKRNFERLQSTTV-LKAQP 535 (672)
T ss_pred chhhcCcc--cc--hhhhchhhhcccccchhhcceeeeccccceeeeccCceEEeccchhhhhhhHHHHHHhcc-ccccc
Confidence 000000 00 0011111112 1346778899999999999999999999999999999999999888863 77899
Q ss_pred cCCCcChhHHHhhhccccccccccCcCchhHHHHHHHHHHHHHHHHHHHhhhcceEEeeC-----CC---eeccCcccCC
Q 005789 519 LSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTR-----GN---LSRLPIILDQ 590 (677)
Q Consensus 519 L~~P~~l~~Ll~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~emL~eYFgi~Ie~~-----G~---L~siP~lL~~ 590 (677)
|..|..|. +++ . .-..|.++.+.|.+. ||.+..+ |. |.++|.. ++
T Consensus 536 l~~P~~l~----ls~--~-------------------nE~vl~d~l~~f~kn-GF~~~~~~n~~~~~~~~l~~~p~s-kn 588 (672)
T KOG1978|consen 536 LICPQALD----LSA--I-------------------NEMVLLDNLPLFEKN-GFKVKIDENAPDGKRVRLLSVPVS-KN 588 (672)
T ss_pred ccCccccc----cCc--c-------------------cceeehhhhHHHHhc-CceEeecCCCcccceeeecccccc-cc
Confidence 99998887 433 1 122477778999994 8888743 22 7888876 45
Q ss_pred CCCCCCCHHHHHHHhcCC
Q 005789 591 YTPDMDRIPEFVLCLGND 608 (677)
Q Consensus 591 y~P~~~~Lp~fl~~La~~ 608 (677)
|+-..+.|-+++.-|...
T Consensus 589 ~~fg~~dl~Eli~~l~~~ 606 (672)
T KOG1978|consen 589 QTFGVSDLKELISVLKNF 606 (672)
T ss_pred cccCHHHHHHHHHHHhhC
Confidence 666667777777777654
No 6
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=100.00 E-value=2.1e-45 Score=400.77 Aligned_cols=307 Identities=28% Similarity=0.375 Sum_probs=257.9
Q ss_pred ccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCCCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCCCcc
Q 005789 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~ 100 (677)
.|+.||.+|..++++|-.+.++++||.|||-||||||||.|.|.|....+. ++|.|||.||..+||.+++.||+|||++
T Consensus 1 ~Ik~L~~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~~t~s-v~ViDdG~G~~rdDl~~lg~ry~TSK~h 79 (1142)
T KOG1977|consen 1 MIKCLSVEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNMETFS-VQVIDDGFGMGRDDLEKLGNRYFTSKCH 79 (1142)
T ss_pred CccccchhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecCceeE-EEEEecCCCccHHHHHHHHhhhhhhhce
Confidence 399999999999999999999999999999999999999999999988874 8999999999999999999999999999
Q ss_pred cccccccccccCccchhhhhhhcceEEEEEEEeCCCcceEEE-EEeCCe-ecc-ccccccCCCceEEEEEeeeccchhhh
Q 005789 101 KYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRV-SYRDGV-MES-EPKACAAVKGTQIMVENLFYNMIARR 177 (677)
Q Consensus 101 ~~~dl~~i~t~GfRGeALaSIs~vs~v~I~Tr~~~~~~~~~~-~~~~g~-~~~-~~~~~~~~~GTtV~v~dLF~n~PvRr 177 (677)
..+|+....||||||||||||+.+|.+.+.|+.++.+.+|++ .+..|. ... +..-.....||||+|+||||++||||
T Consensus 80 ~~ndl~~~~tyGfRGeALasIsd~s~l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD~~R~~sGTtVtV~dlfY~lPVRR 159 (1142)
T KOG1977|consen 80 SVNDLENPRTYGFRGEALASISDMSSLVVISKKKNRTMKTFVKKFQSGSALKALEIDVTRASSGTTVTVYDLFYQLPVRR 159 (1142)
T ss_pred eccccccccccccchhhhhhhhhhhhhhhhhhhcCCchhHHHHHHhccccceecccccccccCCcEEEeHHhhhcchhhh
Confidence 999999999999999999999999999999999999999863 233333 221 11124567899999999999999999
Q ss_pred hccc-CCchhHHHHHHHHHHHHhcCCCeEEEEEECCeeeEEEEeCCCCCHHHHHHHHhChhhhccceEecccccCCCCCc
Q 005789 178 KTLQ-NSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSF 256 (677)
Q Consensus 178 k~l~-~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~~~~~l~t~~~~s~~~~i~~i~G~~~~~~L~~i~~~~~~~~~~~ 256 (677)
|+.. ++.+++.+|+..|.++|+.||+|+|++.+..+...+|++.+..+..+.+.. . .
T Consensus 160 r~k~~~P~k~fe~Ik~~i~~i~lmHp~iSfsv~~~~s~~~~lq~n~s~~~~eilfr----------------~------k 217 (1142)
T KOG1977|consen 160 RLKCMDPRKEFEKIKQRIEAISLMHPSISFSVRNDVSGSMVLQLNKSQKLREILFR----------------Y------K 217 (1142)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHhhccceeEEEEeccCcceeeecCccchhhhhhhh----------------h------c
Confidence 9654 678999999999999999999999999998777888998875443332221 1 1
Q ss_pred ceEEEEEEeCCCCCCCCceEEEEEcCeecCChhHHHHHHHHHhhcCCCCCCceEEEEEEcCCCccccccCCCCCeEecCC
Q 005789 257 VFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLN 336 (677)
Q Consensus 257 ~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~ 336 (677)
++.+. +...+-+++.+++|||||.|-.....+.+.++-+.-. -...|-++|++.||...+||-.+|+|+-|.|.+
T Consensus 218 ~~e~~----~s~~~~N~t~g~l~v~~~~~~~~~kh~~~~q~lR~~~-~~~~P~yvi~v~cp~~ly~vs~epakt~ieF~~ 292 (1142)
T KOG1977|consen 218 EFELS----SSEAHYNKTMGFLFVNKRLVLRTKKHKLIDQLLRKES-IICKPKYVINVQCPFCLYDVSMEPAKTLIEFQN 292 (1142)
T ss_pred ccccc----cchhccccccceeeecchhhhccchhhHHHHHHHhhh-eeccCcceeecccchhhhhhhcCcccchhhhhc
Confidence 22221 1111223567899999999998888888887766421 124577899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q 005789 337 QELIVEKIQSAVELKLRQS 355 (677)
Q Consensus 337 e~~I~~~I~~~l~~~L~~~ 355 (677)
|+.++..|++.+..+|.+.
T Consensus 293 w~~~l~~I~~~~~~~~kkd 311 (1142)
T KOG1977|consen 293 WDTLLFCIQEGVKMFLKKD 311 (1142)
T ss_pred chhhHhHHHHhhhhhhhcc
Confidence 9999999999999999763
No 7
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.97 E-value=6.6e-31 Score=298.01 Aligned_cols=246 Identities=20% Similarity=0.245 Sum_probs=202.2
Q ss_pred CHHHHHHHHHHhhhhCCCC-----ceEEEEeeCCee--EEEEEeCCCCCCcccHhhhhhc-ccCCCcccccccccccccC
Q 005789 41 RPVSAVKELVENSLDADAT-----SINVVVKDGGLK--LIQVSDDGHGIRYEDLPILCER-HTTSKLSKYEDLQSIKSMG 112 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgAt-----~I~V~i~~~g~~--~i~V~DNG~GI~~~dl~~~~~r-~~TSK~~~~~dl~~i~t~G 112 (677)
.+.++++|||+|||||+++ .|.|.+..+|.. .|.|.|||+||++++++.+|.+ |+|||+.+. +.+.|
T Consensus 36 ~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~-----~qS~G 110 (659)
T PRK14867 36 SMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRL-----IQSRG 110 (659)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccce-----eccCC
Confidence 3558999999999999986 699998765433 4999999999999999999999 899998753 57899
Q ss_pred ccchhhhhhhcceEE------EEEEEeCCCc---ceEEEEE--eCCeeccccccccCCCceEEE--EEeeeccchhhhhc
Q 005789 113 FRGEALASMTYVGHV------TVTTITKGHL---HGYRVSY--RDGVMESEPKACAAVKGTQIM--VENLFYNMIARRKT 179 (677)
Q Consensus 113 fRGeALaSIs~vs~v------~I~Tr~~~~~---~~~~~~~--~~g~~~~~~~~~~~~~GTtV~--v~dLF~n~PvRrk~ 179 (677)
|||++|+++..++++ .|.|+..+.. .++.+.+ ++|++.....++++++||+|+ |+||||| |+
T Consensus 111 ~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~~~~~~~~~GT~Ie~~V~dLFyn---R~-- 185 (659)
T PRK14867 111 QQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDIVSHKVREGFWRGTRVEGEFKEVTYN---RR-- 185 (659)
T ss_pred CCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCeecccccCCCCCCCcEEEEEEeeceec---hh--
Confidence 999999998877754 7999986554 3455556 678876432456778999999 9999999 43
Q ss_pred ccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCe----eeEEEEeCCCCCHHHHHHHHhChhhhccceEecccccCCCCC
Q 005789 180 LQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA----ARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSS 255 (677)
Q Consensus 180 l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~----~~~~l~t~~~~s~~~~i~~i~G~~~~~~L~~i~~~~~~~~~~ 255 (677)
|.. |.+.|+++||+||+++|+|..+++ .+..+.+++ .+.+++..+||.. ..+|+++....
T Consensus 186 ------E~~-i~e~l~r~ALanP~i~f~l~~~~~~~~~~r~~~~lp~--~~~e~~ph~~G~~-~~~Li~i~~~~------ 249 (659)
T PRK14867 186 ------EQG-PFEYLRRISLSTPHAKITLKDPEETVVFDRTVDEIPE--KPEEMKPHPYGLT-TDELLYIARKT------ 249 (659)
T ss_pred ------hHH-HHHHHHHHHHhCCCcEEEEEeCCccccCCcceeecCc--CHHHHhhccCccc-hhhceehhccC------
Confidence 444 899999999999999999998843 144455554 7889999999999 88899998665
Q ss_pred cceEEEEEEeCCCCCCC-CceEEEEEcCeecCChhHHHHHHHHHhhcCCCCCCceEEEEEEcCCC
Q 005789 256 FVFKMDGYVSNSNYVAK-KTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPE 319 (677)
Q Consensus 256 ~~~~v~G~is~~~~~~~-k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~ 319 (677)
..++++||+ .+.+++. +..|+ +|.++.|.++|.++|+.++|+++||+++|+|++||-
T Consensus 250 ~~~~v~gfl-~p~~sR~~~~~~~------~V~~~~l~~ai~~ay~~~l~~~~~P~~~L~l~i~~~ 307 (659)
T PRK14867 250 DSSKVSSML-NSELSRVTTKRIK------ELEEYVLRDLLLENYRDSVFWDTVVSCYLNFDFTKY 307 (659)
T ss_pred CceEEEEEe-cchhccCCCCcEE------EEccHHHHHHHHHHHhhcccCCCcceEEEEEEeCcc
Confidence 679999998 6666533 45555 788899999999999999999999999999999984
No 8
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=99.96 E-value=3.5e-29 Score=232.99 Aligned_cols=127 Identities=54% Similarity=0.925 Sum_probs=116.3
Q ss_pred CHHHHHHHHhChhhhccceEecccccCCCCCcceEEEEEEeCCCCCCCCceEEEEEcCeecCChhHHHHHHHHHhhcCCC
Q 005789 225 SRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPK 304 (677)
Q Consensus 225 s~~~~i~~i~G~~~~~~L~~i~~~~~~~~~~~~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~ 304 (677)
++.++|..+||.+.+++|++++... +.....++++||+|+|....++..||+|||||+|.++.|.++|+++|+.++|+
T Consensus 1 ~~~~~i~~v~G~~~~~~li~i~~~~--~~~~~~~~i~G~is~p~~~~~~~~q~~fVNgR~V~~~~l~~aI~~~Y~~~l~~ 78 (127)
T cd03483 1 STKDNIRSVYGAAVANELIEVEISD--DDDDLGFKVKGLISNANYSKKKIIFILFINNRLVECSALRRAIENVYANYLPK 78 (127)
T ss_pred CHHHHHHHHhCHHHHhcceEEeccc--CCcCCcEEEEEEEcCchhcCCCceEEEEEcCCEecCHHHHHHHHHHHHHhCcC
Confidence 4689999999999999999998653 10013699999999998776688999999999999999999999999999999
Q ss_pred CCCceEEEEEEcCCCccccccCCCCCeEecCChhHHHHHHHHHHHHHHh
Q 005789 305 ASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 353 (677)
Q Consensus 305 ~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~l~~~L~ 353 (677)
++||+++|+|++||+.|||||||+|+||+|.+|+.|++.|+++|+++|+
T Consensus 79 ~~~P~~~L~i~i~p~~vDVNVHP~K~eV~f~~e~~i~~~i~~~v~~~L~ 127 (127)
T cd03483 79 GAHPFVYLSLEIPPENVDVNVHPTKREVHFLNEEEIIERIQKLVEDKLS 127 (127)
T ss_pred CCccEEEEEEEeChHHeeeccCCCccEEEecCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999884
No 9
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=99.95 E-value=4.3e-28 Score=223.26 Aligned_cols=118 Identities=34% Similarity=0.627 Sum_probs=105.3
Q ss_pred HHHHhChhhhccceEecccccCCCCCcceEEEEEEeCCCCCC-CCceEEEEEcCeecCChhHHHHHHHHHhhcCCCCCCc
Q 005789 230 IRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVA-KKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKP 308 (677)
Q Consensus 230 i~~i~G~~~~~~L~~i~~~~~~~~~~~~~~v~G~is~~~~~~-~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~~~P 308 (677)
|+++||.+++++|++++.+. .+++++||+|+|+... ++..||+|||||+|+++.|+++|+++|+..++.+++|
T Consensus 1 I~~i~G~~~~~~l~~i~~~~------~~~~i~G~is~p~~~~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~~~~~~~P 74 (119)
T PF01119_consen 1 IAQIFGKEFASNLIEIDSED------EDFSIEGYISKPDVSRSSRDRQFIFVNGRPVENKALSKAINEAYRERLPKGRYP 74 (119)
T ss_dssp HHHHHHHHHHCCEEEEEEEE------CCEEEEEEEE-SSCSBSSCTCEEEEETTEEE--HHHHHHHHHHHHCTTCTTSB-
T ss_pred CeEeECHHHHhccEEEeccC------CCEEEEEEEECchhccCCCCcEEEEeCCCeEeChHHHHHHHHHHhhcccCCCCc
Confidence 68999999999999999776 7799999999998664 3688999999999999999999999999999999999
Q ss_pred eEEEEEEcCCCccccccCCCCCeEecCChhHHHHHHHHHHHHHHh
Q 005789 309 FIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 353 (677)
Q Consensus 309 ~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~l~~~L~ 353 (677)
+++|+|+|||+.|||||||+|+||+|.+|++|+++|+++++++|+
T Consensus 75 ~~vL~i~~p~~~vDVNvhP~K~eV~f~~e~~i~~~i~~~i~~~L~ 119 (119)
T PF01119_consen 75 IFVLFIEIPPSEVDVNVHPAKREVRFRDEDEILNLIEEAIREALS 119 (119)
T ss_dssp EEEEEEE-SGGGEEETSSTTTT-EEETTHHHHHHHHHHHHHHHH-
T ss_pred eEEEEEEcchHHccccccccceEEEecCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999984
No 10
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=99.95 E-value=8e-28 Score=222.63 Aligned_cols=121 Identities=24% Similarity=0.428 Sum_probs=113.4
Q ss_pred HHHHHHHhChhhhccceEecccccCCCCCcceEEEEEEeCCCCCC-CCceEEEEEcCeecCChhHHHHHHHHHhhcCCCC
Q 005789 227 LDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVA-KKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKA 305 (677)
Q Consensus 227 ~~~i~~i~G~~~~~~L~~i~~~~~~~~~~~~~~v~G~is~~~~~~-~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~ 305 (677)
.+++..+||...+++|++++.+. .+++++||+|.|.... ++..||+|||||+|.++.|.++|+++|+.+++.+
T Consensus 2 ~~ri~~v~G~~~~~~li~i~~~~------~~~~i~G~is~p~~~r~~~~~q~ifVN~R~V~~~~l~~ai~~~y~~~~~~~ 75 (123)
T cd03482 2 LQRLADILGEDFAEQALAIDEEA------GGLRLSGWIALPTFARSQADIQYFYVNGRMVRDKLISHAVRQAYSDVLHGG 75 (123)
T ss_pred HhHHHHHhCHHHHhccceEeccC------CCEEEEEEEeCchhccCCCCcEEEEEcCcEECChHHHHHHHHHHHHhccCC
Confidence 57899999999999999998655 6799999999998653 4788999999999999999999999999999999
Q ss_pred CCceEEEEEEcCCCccccccCCCCCeEecCChhHHHHHHHHHHHHHHh
Q 005789 306 SKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 353 (677)
Q Consensus 306 ~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~l~~~L~ 353 (677)
+||+++|+|+|||+.|||||||+|+||+|.+|+.|++.|+++|+++|+
T Consensus 76 ~~P~~vL~l~ipp~~vDvNVhP~K~eV~f~~e~~i~~~i~~~i~~~L~ 123 (123)
T cd03482 76 RHPAYVLYLELDPAQVDVNVHPAKHEVRFRDSRLVHDFIYHAVKKALA 123 (123)
T ss_pred CCcEEEEEEEcChHheeeccCCCccEEEECCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999884
No 11
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=99.94 E-value=1e-26 Score=217.97 Aligned_cols=124 Identities=23% Similarity=0.471 Sum_probs=112.9
Q ss_pred CHHHHHHHHhChhhhccceEecccccCCCCCcceEEEEEEeCCC--CC-CCCceEEEEEcCeecCC-hhHHHHHHHHHhh
Q 005789 225 SRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSN--YV-AKKTTMVLFVNDRLVEC-APLKRAVEIVYAA 300 (677)
Q Consensus 225 s~~~~i~~i~G~~~~~~L~~i~~~~~~~~~~~~~~v~G~is~~~--~~-~~k~~q~ifIN~R~V~~-~~l~kaI~~~y~~ 300 (677)
++.+++.++||...+.+|++++... +. .+++++||+|+|. .. .++..||+|||||+|.+ +.+.++|+++|+.
T Consensus 1 ~l~~~i~~v~G~~~~~~li~i~~~~--~~--~~~~i~G~is~p~~~~~~~~~~~q~~fVN~R~v~~~~~l~k~i~~~y~~ 76 (132)
T cd03485 1 DHKEALARVLGTAVAANMVPVQSTD--ED--PQISLEGFLPKPGSDVSKTKSDGKFISVNSRPVSLGKDIGKLLRQYYSS 76 (132)
T ss_pred CHHHHHHHHhCHHHHhccEEEeccC--CC--CcEEEEEEECCCCcCCCcccCCcEEEEECCeecccchHHHHHHHHHHHH
Confidence 4679999999999999999998654 22 4699999999983 33 24788999999999999 9999999999999
Q ss_pred cC---CCCCCceEEEEEEcCCCccccccCCCCCeEecCChhHHHHHHHHHHHHHH
Q 005789 301 TF---PKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 352 (677)
Q Consensus 301 ~l---p~~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~l~~~L 352 (677)
++ +.++||+++|+|+|||+.|||||||+|+||+|.+|+.|++.|+++|+.++
T Consensus 77 ~~~~~~~~~~P~~~L~i~~~~~~vDVNVhP~K~eV~f~~e~~v~~~i~~~v~~~~ 131 (132)
T cd03485 77 AYRKSSLRRYPVFFLNILCPPGLVDVNIEPDKDDVLLQNKEAVLQAVENLLESLY 131 (132)
T ss_pred HhccccccCCCEEEEEEEcCCCceeeccCCccCEEEEcChHHHHHHHHHHHHHHc
Confidence 99 99999999999999999999999999999999999999999999998875
No 12
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=99.94 E-value=1.2e-26 Score=219.78 Aligned_cols=122 Identities=20% Similarity=0.376 Sum_probs=113.8
Q ss_pred CHHHHHHHHhChhhhccceEecccccCCCCCcceEEEEEEeCCCCCCCCceEEEEEcCeecCChhHHHHHHHHHhh----
Q 005789 225 SRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAA---- 300 (677)
Q Consensus 225 s~~~~i~~i~G~~~~~~L~~i~~~~~~~~~~~~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~---- 300 (677)
++.++++++||...+++|++++.+. .+++++||||.+. ..+|..||+|||||+|.++.|.++|+++|+.
T Consensus 1 ~~~~~i~~i~G~~~~~~l~~v~~~~------~~~~v~G~is~p~-~~sk~~q~ifVN~R~v~~~~l~~aI~~~y~~~~~~ 73 (141)
T cd03486 1 SILSVFKQIYGLVLAQKLKEVSAKF------QEYEVSGYISSEG-HYSKSFQFIYVNGRLYLKTRFHKLINKLFRKTSAV 73 (141)
T ss_pred CHHHHHHHHhChhhhccEEEeeccc------CcEEEEEEEcCCC-CCCCceEEEEECCEEechHHHHHHHHHHHhhcccc
Confidence 4678999999999999999999776 7899999999998 4457899999999999999999999999999
Q ss_pred ----cC-----------CCCCCceEEEEEEcCCCccccccCCCCCeEecCChhHHHHHHHHHHHHHHh
Q 005789 301 ----TF-----------PKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 353 (677)
Q Consensus 301 ----~l-----------p~~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~l~~~L~ 353 (677)
.+ |+++||+++|+|+|||+.|||||||+|+||+|.+|+.|+++|+++|+++|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~P~~vL~i~~p~~~vDvNvhP~K~eV~f~~~~~i~~~i~~~i~~~L~ 141 (141)
T cd03486 74 AKNKSSPQSKSSRRGKRSQESYPVFVLNITCPASEYDLSQEPSKTIIEFKDWKTLLPLILEVVKSFLK 141 (141)
T ss_pred ccccccccccccccccCCccCCCEEEEEEecCchHheeeeCCceeEEEecChHHHHHHHHHHHHHHhC
Confidence 55 889999999999999999999999999999999999999999999999883
No 13
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=99.93 E-value=8.3e-26 Score=208.64 Aligned_cols=120 Identities=40% Similarity=0.639 Sum_probs=112.7
Q ss_pred HHHHHHHhChhhhccceEecccccCCCCCcceEEEEEEeCCCCC-CCCceEEEEEcCeecCChhHHHHHHHHHhhcCCCC
Q 005789 227 LDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKA 305 (677)
Q Consensus 227 ~~~i~~i~G~~~~~~L~~i~~~~~~~~~~~~~~v~G~is~~~~~-~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~ 305 (677)
.+++.++||..+.++|++++.+. ..++++||+|.++.. +++..||+|||||+|.++.|.++|+++|+.+++.+
T Consensus 2 ~~~i~~v~G~~~~~~l~~i~~~~------~~~~i~G~is~~~~~~~~~~~q~~fVN~R~v~~~~l~~ai~~~y~~~~~~~ 75 (122)
T cd00782 2 KDRIAQVYGKEVAKNLIEVELES------GDFRISGYISKPDFGRSSKDRQFLFVNGRPVRDKLLSKAINEAYRSYLPKG 75 (122)
T ss_pred HHHHHHHcCHHHHhcceEEeccC------CCEEEEEEEECchhhcCCCccEEEEECCeEecCHHHHHHHHHHHHHhCcCC
Confidence 57899999999999999999876 789999999999853 45788999999999999999999999999999999
Q ss_pred CCceEEEEEEcCCCccccccCCCCCeEecCChhHHHHHHHHHHHHHH
Q 005789 306 SKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 352 (677)
Q Consensus 306 ~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~l~~~L 352 (677)
+||+++|+|+|||+.+||||||+|++|+|.+|+.|++.|+++++++|
T Consensus 76 ~~P~~~L~i~~~~~~~DvNvhP~K~eV~f~~~~~i~~~i~~~v~~~l 122 (122)
T cd00782 76 RYPVFVLNLELPPELVDVNVHPTKREVRFSDEEEVLELIREALRSAL 122 (122)
T ss_pred CCcEEEEEEEeChhheeeeeCCCCCEEEecCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998875
No 14
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=99.93 E-value=1.9e-24 Score=248.31 Aligned_cols=177 Identities=21% Similarity=0.344 Sum_probs=155.4
Q ss_pred ccccCChHHHHHHhcCCccc--CHHHHHHHHHHhhhh---C-CCCceEEEEeeCCeeEEEEEeCCCCCCccc--------
Q 005789 21 KIHRLEESVVNRIAAGEVIQ--RPVSAVKELVENSLD---A-DATSINVVVKDGGLKLIQVSDDGHGIRYED-------- 86 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~--~p~~~vkELveNSiD---A-gAt~I~V~i~~~g~~~i~V~DNG~GI~~~d-------- 86 (677)
.|+.|..--.-|.+.|.+|. +|+++|+|||+||+| | +|+.|.|.+..+| +|+|.|||+||+.++
T Consensus 8 ~i~~L~gle~VRkRPgMYigs~~~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~d~--~I~V~DnGrGIp~~~h~~~g~~~ 85 (625)
T TIGR01055 8 DIEVLDGLEPVRKRPGMYTDTTRPNHLVQEVIDNSVDEALAGFASIIMVILHQDQ--SIEVFDNGRGMPVDIHPKEGVSA 85 (625)
T ss_pred hceeecccHHhhcCCCCeeCCCCcceeehhhhhcccchhhcCCCCEEEEEEeCCC--eEEEEecCCccCcccccccCCcH
Confidence 59999999999999999995 699999999999999 9 5999999998775 699999999999999
Q ss_pred Hhhhh-hcccCCCcccccccccccccCccchhhhhhhcceE-EEEEEEeCCCcceEEEEEeCCeeccccc---cc-cCCC
Q 005789 87 LPILC-ERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDGVMESEPK---AC-AAVK 160 (677)
Q Consensus 87 l~~~~-~r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs~-v~I~Tr~~~~~~~~~~~~~~g~~~~~~~---~~-~~~~ 160 (677)
+++++ .+|+|||+.+. +.+ .|.||||+||++++++|+ ++|+|++.+.. |++.|.+|....... ++ ...+
T Consensus 86 ~e~v~t~lhagsK~~~~--~~~-~SgG~~GvGls~vnalS~~l~v~~~r~g~~--~~~~~~~G~~~~~~~~i~~~~~~~~ 160 (625)
T TIGR01055 86 VEVILTTLHAGGKFSNK--NYH-FSGGLHGVGISVVNALSKRVKIKVYRQGKL--YSIAFENGAKVTDLISAGTCGKRLT 160 (625)
T ss_pred HHHhhhcccccCCCCCC--cce-ecCCCcchhHHHHHHhcCeEEEEEEECCeE--EEEEEECCeEccccccccccCCCCC
Confidence 88887 99999999753 555 899999999999999997 99999987654 999999998742222 34 3569
Q ss_pred ceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhcCCCeEEEEEEC
Q 005789 161 GTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKH 211 (677)
Q Consensus 161 GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~ 211 (677)
||+|++ +|+| ++|++...++..|.++++++|+.||+|+|+|...
T Consensus 161 GT~V~F------~PD~-~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~de 204 (625)
T TIGR01055 161 GTSVHF------TPDP-EIFDSLHFSVSRLYHILRAKAVLCRGVEIEFEDE 204 (625)
T ss_pred CeEEEE------EECH-HHCCCCccCHHHHHHHHHHHHhhCCCcEEEEeec
Confidence 999998 6999 7788888899999999999999999999999865
No 15
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=99.93 E-value=3.3e-25 Score=210.14 Aligned_cols=127 Identities=24% Similarity=0.417 Sum_probs=111.1
Q ss_pred CHHHHHHHHhChhhhccceEeccccc-----------CCCCCcceEEEEEEeCC--CCC-CCCceEEEEEcCeecCChhH
Q 005789 225 SRLDSIRTVYGVSVASNLVQLEASEY-----------NDSSSFVFKMDGYVSNS--NYV-AKKTTMVLFVNDRLVECAPL 290 (677)
Q Consensus 225 s~~~~i~~i~G~~~~~~L~~i~~~~~-----------~~~~~~~~~v~G~is~~--~~~-~~k~~q~ifIN~R~V~~~~l 290 (677)
++.++|..+||..++++|++++.... ......+++++||+|++ +.. .++..||+|||||+|.++.|
T Consensus 1 ~~~~~i~~v~G~~~~~~li~v~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVN~R~V~~~~l 80 (142)
T cd03484 1 DIKDNIINVFGGKVIKGLIPINLELDVNPTKEELDSDEDLADSEVKITGYISKPSHGCGRSSSDRQFFYINGRPVDLKKV 80 (142)
T ss_pred CHHHHHHHHhCHHHHhcccceeccccccccccccccccccCCCcEEEEEEECCCcccCCCCCCCcEEEEECCeecCCHHH
Confidence 36799999999999999999875430 00011469999999999 443 33678999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCceEEEEEEcCCCccccccCCCCCeEecCChhHHHHHHHHHHHHHH
Q 005789 291 KRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 352 (677)
Q Consensus 291 ~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~l~~~L 352 (677)
.++|+++|+.++ +++||+++|+|+|||+.|||||||+|+||+|.+|+.|++.|+++|++++
T Consensus 81 ~~aI~~~y~~~~-~~~~P~~vL~i~vp~~~vDvNVhP~K~eV~f~~e~~i~~~i~~~v~~~~ 141 (142)
T cd03484 81 AKLINEVYKSFN-SRQYPFFILNISLPTSLYDVNVTPDKRTVLLHDEDRLIDTLKTSLSELF 141 (142)
T ss_pred HHHHHHHHHHhc-CcCCcEEEEEEEeCCcceeeeeCCccCEEEEcChHHHHHHHHHHHHHHh
Confidence 999999999998 7899999999999999999999999999999999999999999999886
No 16
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.93 E-value=1.3e-25 Score=254.96 Aligned_cols=202 Identities=23% Similarity=0.349 Sum_probs=168.2
Q ss_pred CHHHHHHHHHHhhhhCCCC-----ceEEEEeeCCe-eEEEEEeCCCCCCcccHhhhhhccc-CCCcccccccccccccCc
Q 005789 41 RPVSAVKELVENSLDADAT-----SINVVVKDGGL-KLIQVSDDGHGIRYEDLPILCERHT-TSKLSKYEDLQSIKSMGF 113 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgAt-----~I~V~i~~~g~-~~i~V~DNG~GI~~~dl~~~~~r~~-TSK~~~~~dl~~i~t~Gf 113 (677)
.+..+|+|||+||+||+++ .|.|.+..+|. ..|+|.|||+||++++++.+|.||+ |||+...+ .+.||
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~-----~srG~ 120 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHARE-----QSRGQ 120 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccc-----cCCCC
Confidence 4779999999999999876 68888876654 4799999999999999999999987 89987543 57999
Q ss_pred cchhhhhhhcceE------EEEEEEeCCCcceE--EEEEeCCe----ec-cccccccCCCceEEEEEeeeccchhhhhcc
Q 005789 114 RGEALASMTYVGH------VTVTTITKGHLHGY--RVSYRDGV----ME-SEPKACAAVKGTQIMVENLFYNMIARRKTL 180 (677)
Q Consensus 114 RGeALaSIs~vs~------v~I~Tr~~~~~~~~--~~~~~~g~----~~-~~~~~~~~~~GTtV~v~dLF~n~PvRrk~l 180 (677)
+|+||+++..++. ++|+|++.++..|| .+.++.|+ +. ....++.+++||+|+|+ ||+|+|+|+|
T Consensus 121 rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~IeV~-Lf~N~pAR~k-- 197 (795)
T PRK14868 121 QGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHGTRIELE-MEANMRARQQ-- 197 (795)
T ss_pred CceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCceEEEEE-EEccCchhhh--
Confidence 9999999988886 69999998877775 77777774 21 12345678999999999 9999999875
Q ss_pred cCCchhHHHHHHHHHHHHhcCCCeEEEEEECCeeeEEEEe-CCCCCHHHHHHHH----hChhhhccceEecccccCCCCC
Q 005789 181 QNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHS-IATSSRLDSIRTV----YGVSVASNLVQLEASEYNDSSS 255 (677)
Q Consensus 181 ~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~~~~~l~t-~~~~s~~~~i~~i----~G~~~~~~L~~i~~~~~~~~~~ 255 (677)
|.+.|+++||+||+++|++..++ ..+.+ ++++.+.+....| ||.++ ..|+.+....
T Consensus 198 ---------I~eyl~r~Al~nP~a~f~l~~~~---~~~~~~r~t~~lp~~p~eIkPHP~Gve~-~~L~~m~~~t------ 258 (795)
T PRK14868 198 ---------LHDYIKHTAVVNPHARIELREPD---ESLKFERATDQLPAETEEIRPHPHGVEL-GTLLKMLEAT------ 258 (795)
T ss_pred ---------HHHHHHHHHhhCCCeEEEEEECC---EEEEecccccccccCchhccCCCCCcCH-HHHHHHHhcc------
Confidence 88999999999999999999883 23555 6778899999999 99998 7788887665
Q ss_pred cceEEEEEEeCCCCC
Q 005789 256 FVFKMDGYVSNSNYV 270 (677)
Q Consensus 256 ~~~~v~G~is~~~~~ 270 (677)
..+++.||+ .+.++
T Consensus 259 ~~~~l~gFL-~~efs 272 (795)
T PRK14868 259 DSYSVSGFL-QEEFT 272 (795)
T ss_pred CCcEeHHhh-hhhhc
Confidence 679999999 65554
No 17
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=99.92 E-value=3e-24 Score=246.32 Aligned_cols=258 Identities=19% Similarity=0.243 Sum_probs=186.7
Q ss_pred HHHHHHHHHhhhhCC----CCceEEEEeeCCeeEEEEEeCCCCCCcccHh--------hh-hhcccCCCccccccccccc
Q 005789 43 VSAVKELVENSLDAD----ATSINVVVKDGGLKLIQVSDDGHGIRYEDLP--------IL-CERHTTSKLSKYEDLQSIK 109 (677)
Q Consensus 43 ~~~vkELveNSiDAg----At~I~V~i~~~g~~~i~V~DNG~GI~~~dl~--------~~-~~r~~TSK~~~~~dl~~i~ 109 (677)
..+|+|||+||+||+ |+.|.|.|+.+| +|+|.|||+||+.+..+ .+ ...|++||+ +|.....
T Consensus 3 ~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g--~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kf---d~~~~k~ 77 (594)
T smart00433 3 HHLVDEIVDNAADEALAGYMDTIKVTIDKDN--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKF---DDDAYKV 77 (594)
T ss_pred eEEEeeehhcccchhccCCCCEEEEEEeCCC--eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCC---CCCCccc
Confidence 457899999999998 999999999888 69999999999965432 22 244566653 4445556
Q ss_pred ccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeC-Ceecccc--ccccCCCceEEEEEeeeccchhhhhcccCCch
Q 005789 110 SMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRD-GVMESEP--KACAAVKGTQIMVENLFYNMIARRKTLQNSSD 185 (677)
Q Consensus 110 t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~-g~~~~~~--~~~~~~~GTtV~v~dLF~n~PvRrk~l~~~~~ 185 (677)
|.||||+||++++++| +++|+|++.+. .|++.|+. |++...+ .++...+||+|+ | +|+|++|.++...
T Consensus 78 s~G~~G~Gls~vnalS~~l~v~~~~~g~--~~~~~~~~~G~~~~~~~~~~~~~~~GT~V~----F--~Pd~~~F~~~~~~ 149 (594)
T smart00433 78 SGGLHGVGASVVNALSTEFEVEVARDGK--EYKQSFSNNGKPLSEPKIIGDTKKDGTKVT----F--KPDLEIFGMTTDD 149 (594)
T ss_pred cCCcccchHHHHHHhcCceEEEEEeCCc--EEEEEEeCCCeECccceecCCCCCCCcEEE----E--EECHHHhCCcccc
Confidence 9999999999999996 69999999864 49999965 8876433 345668999999 4 6999999876678
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEEECCeee-EEEEeCCCCCHHHHHHHHhChhhhc--cceEecccccCCCCCcceEEEE
Q 005789 186 DYTKIVDLLSRMAIHHTNVSFSCRKHGAAR-ADVHSIATSSRLDSIRTVYGVSVAS--NLVQLEASEYNDSSSFVFKMDG 262 (677)
Q Consensus 186 e~~~i~~~v~~yAl~~p~v~F~l~~~g~~~-~~l~t~~~~s~~~~i~~i~G~~~~~--~L~~i~~~~~~~~~~~~~~v~G 262 (677)
++..|.+.++++|+.||+|+|+|.+..... ..| ...+.+.+-+..+.+....- ..+.+..+. .+..++.
T Consensus 150 ~~~~i~~rl~~~A~l~pgl~i~l~der~~~~~~f--~~~~Gl~~yv~~~~~~~~~~~~~~i~~~~~~------~~~~vev 221 (594)
T smart00433 150 DFELLKRRLRELAFLNKGVKITLNDERSDEEETF--LFEGGIKDYVELLNKNKELLSPEPTYIEGEK------DNIRVEV 221 (594)
T ss_pred hHHHHHHHHHHHHhcCCCcEEEEeccCCCcceEE--ECCCCHHHHHHHHhCCCCcccCCCeEEEEEe------CCcEEEE
Confidence 999999999999999999999998753211 112 23456788887776543211 112232222 3466777
Q ss_pred EEeCCCCCCCCceEEEEEcCeecCC---------hhHHHHHHHHHhhcCC-C---------CCCceEEEEEEcCCCcccc
Q 005789 263 YVSNSNYVAKKTTMVLFVNDRLVEC---------APLKRAVEIVYAATFP-K---------ASKPFIYMSIVLPPEHVDV 323 (677)
Q Consensus 263 ~is~~~~~~~k~~q~ifIN~R~V~~---------~~l~kaI~~~y~~~lp-~---------~~~P~~~L~i~i~p~~vDV 323 (677)
.+.-.+. ....++-|||+.+... ..|.++|++.++.... + ....++++++.++....|=
T Consensus 222 al~~~~~--~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~~~k~~~i~~~diregl~~vIsvki~~P~Feg 299 (594)
T smart00433 222 AFQYTDG--YSENIVSFVNNIATTEGGTHENGFKDALTRVINEYAKKKKKLKEKNIKGEDVREGLTAFISVKIPEPQFEG 299 (594)
T ss_pred EEEccCC--CCcEEEEEECCccCCCCCcHHHHHHHHHHHHHHHHHHHhCccccCCCChhhHhhCeEEEEEEEEchheecc
Confidence 7665432 1356899999999873 4567777666654211 1 2467899999998666553
No 18
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=99.91 E-value=5.3e-23 Score=238.65 Aligned_cols=302 Identities=18% Similarity=0.223 Sum_probs=200.4
Q ss_pred ccccCChHHHHHHhcCCccc-----CHHHHHHHHHHhhhh---CC-CCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhh
Q 005789 21 KIHRLEESVVNRIAAGEVIQ-----RPVSAVKELVENSLD---AD-ATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILC 91 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~-----~p~~~vkELveNSiD---Ag-At~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~ 91 (677)
.|+.|..--.-|.+.|.+|. ....+|+|||+||+| || |+.|.|.++.+|. |+|.|||+||+.+
T Consensus 5 ~i~~L~~lE~vr~RP~mYiGs~~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~~g~--I~V~DnG~GIp~~------ 76 (654)
T TIGR01059 5 SIKVLEGLEAVRKRPGMYIGSTGETGLHHLVYEVVDNSIDEAMAGYCDTINVTINDDGS--VTVEDNGRGIPVD------ 76 (654)
T ss_pred HCeEecchHHHhcCCCceeCCCCcchHHhhhHHhhhccccccccCCCCEEEEEEeCCCc--EEEEEeCCCcCcc------
Confidence 48889888888899999884 568999999999999 99 9999999998884 9999999999986
Q ss_pred hcccCCCcccccccccc-------------cccCccchhhhhhhcceE-EEEEEEeCCCcceEEEEEeCCeeccc--ccc
Q 005789 92 ERHTTSKLSKYEDLQSI-------------KSMGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDGVMESE--PKA 155 (677)
Q Consensus 92 ~r~~TSK~~~~~dl~~i-------------~t~GfRGeALaSIs~vs~-v~I~Tr~~~~~~~~~~~~~~g~~~~~--~~~ 155 (677)
+|.|||+...+++... .|.||||+||++++++|+ ++|+|++.+. .|++.|++|.+... ..+
T Consensus 77 -~h~~~ki~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~--~~~~~~~~G~~~~~l~~~~ 153 (654)
T TIGR01059 77 -IHPEEGISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGK--IYRQEFERGIPLGPLEVVG 153 (654)
T ss_pred -ccCcCCCCchHHheeeecccCccCCCcceecCCccchhHHHHHHhcCeEEEEEEECCe--EEEEEEeCCCcccCceecc
Confidence 4555555554444333 799999999999999997 9999998764 39999999987642 234
Q ss_pred ccCCCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCe---eeEEEEeCCCCCHHHHHHH
Q 005789 156 CAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA---ARADVHSIATSSRLDSIRT 232 (677)
Q Consensus 156 ~~~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~---~~~~l~t~~~~s~~~~i~~ 232 (677)
+....||+|+ |++.|+ +|+ +...++..|.+.++++|+.||+|+|+|..... ....|.+++ -+.+-+..
T Consensus 154 ~~~~~GT~V~----F~pdp~--~F~-~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~~~--Gl~~yv~~ 224 (654)
T TIGR01059 154 ETKKTGTTVR----FWPDPE--IFE-TTEFDFDILAKRLRELAFLNSGVKISLEDERDGKGKSVTFHYEG--GIKSFVKY 224 (654)
T ss_pred CCCCCCcEEE----EEEChH--HhC-CcccCHHHHHHHHHHhhccCCCeEEEEEeecCCCCceeEEEcCC--cHHHHHHH
Confidence 5678999999 899998 455 66778999999999999999999999986421 133455543 34444443
Q ss_pred HhChh-hh-ccceEecccccCCCCCcceEEEEEEeCCCCCCCCceEEEEEcCeecCC-----hhHHHHHHHHHhhcC---
Q 005789 233 VYGVS-VA-SNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC-----APLKRAVEIVYAATF--- 302 (677)
Q Consensus 233 i~G~~-~~-~~L~~i~~~~~~~~~~~~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~-----~~l~kaI~~~y~~~l--- 302 (677)
+-... .. ...+.+..+. .++.++..+.-.+. -...++-|||+-+-.. ..++.+|.++...+.
T Consensus 225 l~~~~~~l~~~~i~~~~~~------~~~~veva~~~~~~--~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~ 296 (654)
T TIGR01059 225 LNRNKEPLHEEIIYIKGEK------EGIEVEVALQWNDG--YSENILSFVNNINTREGGTHLEGFRSALTRVINSYAKNN 296 (654)
T ss_pred HhcCCCcCCCCCeEEEecc------cCeEEEEEEEecCC--CceeEEEEECcccCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 32111 00 1122232221 23444444443221 1234689999977542 234444443333222
Q ss_pred --CCC-----------CCceEEEEEEcCCCccccccCCCCCeEecCChh-HHHHHHHHHHHHHHh
Q 005789 303 --PKA-----------SKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQE-LIVEKIQSAVELKLR 353 (677)
Q Consensus 303 --p~~-----------~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~-~I~~~I~~~l~~~L~ 353 (677)
-|. ..=++++++.++.-..| -.||...-=..-. .+.+.+++.+..+|.
T Consensus 297 ~l~K~~~~~i~~~diregl~~vvsv~i~~P~F~---gQTK~kL~~~~v~~~v~~~v~~~l~~~l~ 358 (654)
T TIGR01059 297 KLLKESKPNLTGEDIREGLTAVISVKVPDPQFE---GQTKTKLGNSEVRSIVESLVYEKLTEFFE 358 (654)
T ss_pred CcccccCCCCCHHHHhhccEEEEEEecCCCccc---CcccccccChhHHHHHHHHHHHHHHHHHH
Confidence 111 12367888888755444 2555443211111 133444555555553
No 19
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=99.91 E-value=8.7e-23 Score=235.35 Aligned_cols=285 Identities=17% Similarity=0.205 Sum_probs=193.5
Q ss_pred ccccCChHHHHHHhcCCcccC-----HHHHHHHHHHhhhh---CC-CCceEEEEeeCCeeEEEEEeCCCCCCcccH----
Q 005789 21 KIHRLEESVVNRIAAGEVIQR-----PVSAVKELVENSLD---AD-ATSINVVVKDGGLKLIQVSDDGHGIRYEDL---- 87 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~~-----p~~~vkELveNSiD---Ag-At~I~V~i~~~g~~~i~V~DNG~GI~~~dl---- 87 (677)
.|+.|..--.-|.+.|.+|-+ ...+|+|||+||+| || |+.|.|.++.+| .|+|.|||+||+.+-.
T Consensus 12 ~i~~L~~lE~Vr~RPgMYiGs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~g--~I~V~DnG~GIp~~~h~~~k 89 (638)
T PRK05644 12 QIQVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINEDG--SITVTDNGRGIPVDIHPKTG 89 (638)
T ss_pred HCeEecchHHHhcCCCceECCCChhhHHhhhHHhhhcccccccCCCCCEEEEEEeCCC--cEEEEEeCccccCCccCCCC
Confidence 599999988889999999974 47899999999999 99 999999999888 6999999999998621
Q ss_pred ----hhh-hhcccCCCcccccccccccccCccchhhhhhhcceE-EEEEEEeCCCcceEEEEEeCCeecccccccc--CC
Q 005789 88 ----PIL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDGVMESEPKACA--AV 159 (677)
Q Consensus 88 ----~~~-~~r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs~-v~I~Tr~~~~~~~~~~~~~~g~~~~~~~~~~--~~ 159 (677)
+.+ +..|++||+. |.....|.||||+||++++++|+ ++|+|++.+. +|++.|.+|.......+++ ..
T Consensus 90 i~~~e~i~~~lhag~kfd---~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~--~~~~~~~~G~~~~~~~~~~~~~~ 164 (638)
T PRK05644 90 KPAVEVVLTVLHAGGKFG---GGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK--IYYQEYERGVPVTPLEVIGETDE 164 (638)
T ss_pred CCchHHheeeecccCccC---CCcccccCCccccchhhhhheeceEEEEEEeCCc--EEEEEEECCeEccCccccCCcCC
Confidence 122 3445555543 22233499999999999999997 9999997664 8999999998763223333 67
Q ss_pred CceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCe---eeEEEEeCCCCCHHHHHHHHhCh
Q 005789 160 KGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA---ARADVHSIATSSRLDSIRTVYGV 236 (677)
Q Consensus 160 ~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~---~~~~l~t~~~~s~~~~i~~i~G~ 236 (677)
.||+|+. +|.|++| ++...++..|.+.++++|+.||+|+|+|..... ....|... +.+.+-+..+...
T Consensus 165 ~GT~I~F------~Pd~~~F-~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~~--~Gl~dyv~~l~~~ 235 (638)
T PRK05644 165 TGTTVTF------KPDPEIF-ETTEFDYDTLATRLRELAFLNKGLKITLTDEREGEEKEETFHYE--GGIKEYVEYLNRN 235 (638)
T ss_pred CCcEEEE------EECHHHc-CCcccCHHHHHHHHHHHHhhCCCcEEEEEeccCCCcceeEEEcC--CCHHHHHHHHhcC
Confidence 9999994 7999998 878889999999999999999999999986531 12335443 3455655544322
Q ss_pred hhh--ccceEecccccCCCCCcceEEEEEEeCCCCCCCCceEEEEEcCeecCC-----hh----HHHHHHHHHhhc--CC
Q 005789 237 SVA--SNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC-----AP----LKRAVEIVYAAT--FP 303 (677)
Q Consensus 237 ~~~--~~L~~i~~~~~~~~~~~~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~-----~~----l~kaI~~~y~~~--lp 303 (677)
.-. ...+.+.... .++.++.-+.-.+. -...++-|||+-+-.. .. |.++|++..+.. +.
T Consensus 236 ~~~~~~~~i~~~~~~------~~~~veval~~~~~--~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~l~~~~~k~~~~K 307 (638)
T PRK05644 236 KEPLHEEPIYFEGEK------DGIEVEVAMQYNDG--YSENILSFANNINTHEGGTHEEGFKTALTRVINDYARKNKLLK 307 (638)
T ss_pred CCcCCCCCeEEEeec------cCeEEEEEEEecCC--CceEEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhCccc
Confidence 110 1112222211 23444444432221 1234789999988753 23 444444433321 11
Q ss_pred CC----------CCceEEEEEEcCCCccccccCCCCCeE
Q 005789 304 KA----------SKPFIYMSIVLPPEHVDVNVHPTKREV 332 (677)
Q Consensus 304 ~~----------~~P~~~L~i~i~p~~vDVNVhPtK~eV 332 (677)
++ ..=++++++.++--..|= .||...
T Consensus 308 k~~~~i~~~dIregl~~vVsv~i~nP~F~g---QTKekL 343 (638)
T PRK05644 308 EKDDNLTGEDVREGLTAVISVKHPEPQFEG---QTKTKL 343 (638)
T ss_pred ccCCCCChhHHhhceEEEEEEecCCCcccC---cccccc
Confidence 11 123678888888544442 555433
No 20
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=99.90 E-value=2.5e-22 Score=231.62 Aligned_cols=279 Identities=17% Similarity=0.174 Sum_probs=201.4
Q ss_pred ccccCChHHHHHHhcCCcc-----cCHHHHHHHHHHhhhhC----CCCceEEEEeeCCeeEEEEEeCCCCCCcccHhh--
Q 005789 21 KIHRLEESVVNRIAAGEVI-----QRPVSAVKELVENSLDA----DATSINVVVKDGGLKLIQVSDDGHGIRYEDLPI-- 89 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI-----~~p~~~vkELveNSiDA----gAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~-- 89 (677)
.|+.|..--.-|.+.|.+| .+|.++|+|||+||+|+ +|+.|.|.+..+| .|+|.|||+||+.++.+.
T Consensus 12 ~i~~L~~lE~VrkRP~mYiGs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~dg--~I~V~DnGrGIP~~~~~~~~ 89 (631)
T PRK05559 12 SIEVLEGLEPVRKRPGMYIGSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHADG--SVSVRDNGRGIPVGIHPEEG 89 (631)
T ss_pred HCeeccchHHHhcCCCceeCCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeCCC--cEEEEEcCCCCCcccccccC
Confidence 5999998888888999886 47899999999999998 7999999999888 699999999999999887
Q ss_pred ------hhhc-ccCCCcccccccccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCeeccc---ccccc-
Q 005789 90 ------LCER-HTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESE---PKACA- 157 (677)
Q Consensus 90 ------~~~r-~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~~~~~---~~~~~- 157 (677)
++.+ |+|||+.. +... .|.||||+|+++++++| +++|+|++.+. .|++.|.+|..... ..+++
T Consensus 90 ~~~~E~v~t~lhagsKf~~--~~yk-~SgGl~GvGls~vNalS~~l~V~s~r~g~--~~~~~f~~G~~~~~l~~~~~~~~ 164 (631)
T PRK05559 90 KSGVEVILTKLHAGGKFSN--KAYK-FSGGLHGVGVSVVNALSSRLEVEVKRDGK--VYRQRFEGGDPVGPLEVVGTAGK 164 (631)
T ss_pred CcchheeeeeccccCccCC--cccc-ccCcccccchhhhhhheeeEEEEEEeCCe--EEEEEEECCcCccCccccccccC
Confidence 6655 99999874 3444 79999999999999997 69999998653 39999999976531 22343
Q ss_pred CCCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCeeeEEEEeCCCCCHHHHHHHHhChh
Q 005789 158 AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVS 237 (677)
Q Consensus 158 ~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~~~~~l~t~~~~s~~~~i~~i~G~~ 237 (677)
..+||+|++ +|.|++| ++...++..|.+.++++|+.+|+++|++...+ .+..|... +.+.+.+..++...
T Consensus 165 ~~~GT~V~f------~PD~~iF-~~~~~~~~~i~~~l~~~A~lnpgl~i~l~d~~-~~~~f~~~--~gl~~~v~~~~~~~ 234 (631)
T PRK05559 165 RKTGTRVRF------WPDPKIF-DSPKFSPERLKERLRSKAFLLPGLTITLNDER-ERQTFHYE--NGLKDYLAELNEGK 234 (631)
T ss_pred CCCCcEEEE------EECHHHc-CCcccCHHHHHHHHHHHHhhCCCeEEEEEeCC-ceEEEECC--ccHHHHHHHHhCCC
Confidence 679999999 5999988 77777889999999999999999999999876 23345554 46888888888642
Q ss_pred h-hccceEecccccCCCCCcceEEEEEEeCCCCCCCCceEEEEEcCeecCC---------hhHHHHHHHHHhhc--CCC-
Q 005789 238 V-ASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC---------APLKRAVEIVYAAT--FPK- 304 (677)
Q Consensus 238 ~-~~~L~~i~~~~~~~~~~~~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~---------~~l~kaI~~~y~~~--lp~- 304 (677)
- ...-..+.++. +. .+..++.-+.-.+.. ...++-|||+-+-.. ..|.++|+...+.. +.+
T Consensus 235 ~~i~~~~~i~~~~--~~--~~~~veval~~~~~~--~~~~~SFvN~I~T~~GGTHv~g~~~al~~~in~~~~~~~l~k~~ 308 (631)
T PRK05559 235 ETLPEEFVGSFEG--EA--EGEAVEWALQWTDEG--GENIESYVNLIPTPQGGTHENGFREGLLKAVREFAEKRNLLPKG 308 (631)
T ss_pred CccCCCCceEEee--ee--ccceEEEEEEecCCC--CeEEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 1 10000122221 11 233343333322211 236889999988663 24555555444321 111
Q ss_pred --------CCCceEEEEEEcCCCccc
Q 005789 305 --------ASKPFIYMSIVLPPEHVD 322 (677)
Q Consensus 305 --------~~~P~~~L~i~i~p~~vD 322 (677)
...=++++++.++--..|
T Consensus 309 ~~l~~~diregl~~vvsvki~~P~Fe 334 (631)
T PRK05559 309 KKLEGEDVREGLAAVLSVKIPEPQFE 334 (631)
T ss_pred cCCChhhHhhceEEEEEEEcCCCccc
Confidence 123367888888744443
No 21
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=99.88 E-value=9.1e-22 Score=228.12 Aligned_cols=277 Identities=17% Similarity=0.229 Sum_probs=195.3
Q ss_pred ccccCChHHHHHHhcCCcccC------HHHHHHHHHHhhhh---CC-CCceEEEEeeCCeeEEEEEeCCCCCCcc-----
Q 005789 21 KIHRLEESVVNRIAAGEVIQR------PVSAVKELVENSLD---AD-ATSINVVVKDGGLKLIQVSDDGHGIRYE----- 85 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~~------p~~~vkELveNSiD---Ag-At~I~V~i~~~g~~~i~V~DNG~GI~~~----- 85 (677)
.|+.|..--.-|.+.|.+|.+ +..+|+|+|+||+| || |+.|.|.++.+| +|+|.|||+||+.+
T Consensus 11 ~i~vL~gle~VRkRPgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~dg--sIsV~DnGrGIPvd~h~~~ 88 (756)
T PRK14939 11 SIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTIHADG--SVSVSDNGRGIPTDIHPEE 88 (756)
T ss_pred HCeEecccHHHhcCCCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEEcCCC--eEEEEEcCCcccCCccccc
Confidence 599999998899999999963 47999999999999 99 999999999888 69999999999997
Q ss_pred -----cHhhhhhcccCCCcccccccccccccCccchhhhhhhcceE-EEEEEEeCCCcceEEEEEeCCeecccccccc--
Q 005789 86 -----DLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDGVMESEPKACA-- 157 (677)
Q Consensus 86 -----dl~~~~~r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs~-v~I~Tr~~~~~~~~~~~~~~g~~~~~~~~~~-- 157 (677)
++. ++.+|+|||+.+ |.+.+ |.||||+|++++.++|+ ++|+|++.+. -|++.|.+|........++
T Consensus 89 g~~~~Elv-lt~lhAggKfd~--~~ykv-SgGlhGvG~svvNAlS~~l~v~v~r~gk--~~~q~f~~G~~~~~l~~~g~~ 162 (756)
T PRK14939 89 GVSAAEVI-MTVLHAGGKFDQ--NSYKV-SGGLHGVGVSVVNALSEWLELTIRRDGK--IHEQEFEHGVPVAPLKVVGET 162 (756)
T ss_pred CCchhhhe-eeeecccCCCCC--Ccccc-cCCccCccceEeehccCeEEEEEEeCCe--EEEEEEecCccccCccccCCc
Confidence 443 358999999975 77777 99999999999999997 9999998764 3999999998763223233
Q ss_pred CCCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCe-eeEEEEeCCCCCHHHHHHHHhCh
Q 005789 158 AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA-ARADVHSIATSSRLDSIRTVYGV 236 (677)
Q Consensus 158 ~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~-~~~~l~t~~~~s~~~~i~~i~G~ 236 (677)
..+||+|++ +|.|++| ++...++..|.+.++.+|..||+++|++..... ....|+..+ -+.+-+..+-..
T Consensus 163 ~~~GT~V~F------~PD~~iF-~~~~~~~~~i~~rl~elA~lnpgl~i~l~der~~~~~~f~~eg--Gi~~fv~~l~~~ 233 (756)
T PRK14939 163 DKTGTEVRF------WPSPEIF-ENTEFDYDILAKRLRELAFLNSGVRIRLKDERDGKEEEFHYEG--GIKAFVEYLNRN 233 (756)
T ss_pred CCCCcEEEE------EECHHHc-CCcccCHHHHHHHHHHHhhcCCCCEEEEeccCCCceeEEEeCC--hHHHHHHHHhcC
Confidence 679999999 5999998 777778899999999999999999999986532 122344332 233333322111
Q ss_pred h--hhccceEecccccCCCCCcceEEEEEEeCCCCCCCCceEEEEEcCeecCC-----hh----HHHHHHHHHhh-cCCC
Q 005789 237 S--VASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC-----AP----LKRAVEIVYAA-TFPK 304 (677)
Q Consensus 237 ~--~~~~L~~i~~~~~~~~~~~~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~-----~~----l~kaI~~~y~~-~lp~ 304 (677)
. +....+.+..+. .++.++.-+.-.+. -...++-|+|+-+-.. .. |.++|++..+. -+.|
T Consensus 234 ~~~~~~~~i~~~~~~------~~~~veval~~~~~--~~e~~~SFvN~I~T~~GGTHv~gf~~altr~in~y~~~~~l~K 305 (756)
T PRK14939 234 KTPLHPNIFYFSGEK------DGIGVEVALQWNDS--YQENVLCFTNNIPQRDGGTHLAGFRAALTRTINNYIEKEGLAK 305 (756)
T ss_pred CCcCCCCceEEEeee------CCeEEEEEEEEcCC--CceeEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhCccc
Confidence 1 111222232222 34555544442221 1234689999987552 23 44555543332 1112
Q ss_pred C-----------CCceEEEEEEcCCCccc
Q 005789 305 A-----------SKPFIYMSIVLPPEHVD 322 (677)
Q Consensus 305 ~-----------~~P~~~L~i~i~p~~vD 322 (677)
. ..=++++++.+|--..|
T Consensus 306 ~~~~~l~~~diregl~~vvsvki~~P~Fe 334 (756)
T PRK14939 306 KAKVSLTGDDAREGLTAVLSVKVPDPKFS 334 (756)
T ss_pred ccCCCCCHhHHhhceEEEEEEecCCCccc
Confidence 1 12357889988854444
No 22
>PRK05218 heat shock protein 90; Provisional
Probab=99.86 E-value=1.5e-20 Score=216.38 Aligned_cols=281 Identities=19% Similarity=0.255 Sum_probs=197.6
Q ss_pred HHHHhcCCcccCHHHHHHHHHHhhhhC----------------CCC--ceEEEEeeCCeeEEEEEeCCCCCCcccHhhhh
Q 005789 30 VNRIAAGEVIQRPVSAVKELVENSLDA----------------DAT--SINVVVKDGGLKLIQVSDDGHGIRYEDLPILC 91 (677)
Q Consensus 30 ~~kIaAgevI~~p~~~vkELveNSiDA----------------gAt--~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~ 91 (677)
.+.|. .....+|..+++|||.||.|| +++ .|.|.++.+|. .|+|+|||+||+.+|+...+
T Consensus 16 l~ll~-~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~-~i~I~DnG~GMt~eel~~~l 93 (613)
T PRK05218 16 LHLMI-HSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEAR-TLTISDNGIGMTREEVIENL 93 (613)
T ss_pred HHHHh-hhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCC-eEEEEECCCCCCHHHHHHHH
Confidence 33344 346678999999999999999 333 67777777766 49999999999999999999
Q ss_pred hcccCC-------CcccccccccccccCccchhhhhhhcce-EEEEEEEeCC-CcceEEEEEeCCeecccccccc-CCCc
Q 005789 92 ERHTTS-------KLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKG-HLHGYRVSYRDGVMESEPKACA-AVKG 161 (677)
Q Consensus 92 ~r~~TS-------K~~~~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~-~~~~~~~~~~~g~~~~~~~~~~-~~~G 161 (677)
.++++| |+....+ .....+|..|.++.|+..+| +|+|.||+.+ +..||++...+|... ...++. ..+|
T Consensus 94 ~~ia~Sg~~~f~~k~~~~~~-~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~-~i~~~~~~~~G 171 (613)
T PRK05218 94 GTIAKSGTKEFLEKLKGDQK-KDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEY-TIEEIEKEERG 171 (613)
T ss_pred HhhccccchhHHHHhhcccc-cccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCcee-EEeECCCCCCC
Confidence 999999 4422110 11234566666666777776 8999999987 677999988766543 223343 3799
Q ss_pred eEEEEEeeeccchhhhhcccCCchhH---HHHHHHHHHHH--hcCCCeEE-----EEEECCeeeEEEEeCCCCCHHHHHH
Q 005789 162 TQIMVENLFYNMIARRKTLQNSSDDY---TKIVDLLSRMA--IHHTNVSF-----SCRKHGAARADVHSIATSSRLDSIR 231 (677)
Q Consensus 162 TtV~v~dLF~n~PvRrk~l~~~~~e~---~~i~~~v~~yA--l~~p~v~F-----~l~~~g~~~~~l~t~~~~s~~~~i~ 231 (677)
|+|+|. |+....++ .+|.++|++|| +.+| |.| .+.+.+ +..|...+. +..+...
T Consensus 172 T~I~l~------------Lk~~~~e~~e~~~i~~li~kys~~l~~P-I~~~~~~~~~in~~--~~~w~~~~~-~i~~~~~ 235 (613)
T PRK05218 172 TEITLH------------LKEDEDEFLDEWRIRSIIKKYSDFIPVP-IKLEKEEEETINSA--SALWTRSKS-EITDEEY 235 (613)
T ss_pred cEEEEE------------ECcchhhhcCHHHHHHHHHHHHhcCCCC-EEEecccceeecCC--ccceecCCc-cccHHHH
Confidence 999994 55545444 88999999999 7788 888 344444 667766554 7778888
Q ss_pred HHhChhhhcc----ceEecccccCCCCCcceEEEEEEeCCCCC-------CCCceEEEEEcCeecCChhHHHHHHHHHhh
Q 005789 232 TVYGVSVASN----LVQLEASEYNDSSSFVFKMDGYVSNSNYV-------AKKTTMVLFVNDRLVECAPLKRAVEIVYAA 300 (677)
Q Consensus 232 ~i~G~~~~~~----L~~i~~~~~~~~~~~~~~v~G~is~~~~~-------~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~ 300 (677)
..|+..++.. |..+++.. + ..+.++|++..|... ..+..+.+|||+|+|.+.. ..
T Consensus 236 ~~fy~~~~~~~~~pl~~i~~~~--e---~~~~~~gll~iP~~~~~~~~~~~~~~~~~lyvn~v~I~d~~---------~~ 301 (613)
T PRK05218 236 KEFYKHLAHDFDDPLFWIHNNV--E---GPFEYTGLLYIPKKAPFDLFNRDRKGGLKLYVKRVFIMDDA---------EE 301 (613)
T ss_pred HHHhhhhcccccCCcEEEEccc--C---CceEEEEEEEeCCCCccchhhhcccccEEEEECcEEeeCch---------hh
Confidence 8888777544 88887654 1 569999999887643 2356789999999998753 23
Q ss_pred cCCCCCCceEEEEEEcCCCccccccCCCCCeEecCChhHHHHHHHHHHHHHH
Q 005789 301 TFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 352 (677)
Q Consensus 301 ~lp~~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~l~~~L 352 (677)
+||. | ..++.--++.+.+=.|+. || .+.++.++..|++.|.+.+
T Consensus 302 lLP~--w-l~Fv~GVVDs~dLplnvS---RE--~lq~~~~l~~i~~~l~~kv 345 (613)
T PRK05218 302 LLPE--Y-LRFVKGVIDSEDLPLNVS---RE--ILQEDRVVKKIRKAITKKV 345 (613)
T ss_pred hchH--H-HhheEEEeecCCCCCccC---HH--HHhcCHHHHHHHHHHHHHH
Confidence 4443 2 223555667777777774 44 4666666776666665544
No 23
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.86 E-value=2.1e-21 Score=215.25 Aligned_cols=157 Identities=25% Similarity=0.377 Sum_probs=131.3
Q ss_pred cCHHHHHHHHHHhhhhCCCC-----ceEEEEeeCCe--eEEEEEeCCCCCCcccHhhhhhc-ccCCCccccccccccccc
Q 005789 40 QRPVSAVKELVENSLDADAT-----SINVVVKDGGL--KLIQVSDDGHGIRYEDLPILCER-HTTSKLSKYEDLQSIKSM 111 (677)
Q Consensus 40 ~~p~~~vkELveNSiDAgAt-----~I~V~i~~~g~--~~i~V~DNG~GI~~~dl~~~~~r-~~TSK~~~~~dl~~i~t~ 111 (677)
..+.++++|||+||+||+++ .|.|.+...+. ..|+|.|||+||++++++.+|.+ |+|||+.+ ...+.
T Consensus 27 ~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~-----~~~s~ 101 (488)
T TIGR01052 27 RSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHR-----IIQSR 101 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCcccc-----ccccC
Confidence 35789999999999999886 68888876432 36999999999999999999988 89999864 25789
Q ss_pred CccchhhhhhhcceE------EEEEEEeCCCcceEEEEEe------CCeeccccccccC--CCceEEEEEeeeccchhhh
Q 005789 112 GFRGEALASMTYVGH------VTVTTITKGHLHGYRVSYR------DGVMESEPKACAA--VKGTQIMVENLFYNMIARR 177 (677)
Q Consensus 112 GfRGeALaSIs~vs~------v~I~Tr~~~~~~~~~~~~~------~g~~~~~~~~~~~--~~GTtV~v~dLF~n~PvRr 177 (677)
|++|++|+++..+|+ ++|+|++.++..||++.+. +|++.. ..+++. .+||+|+|+ |+|+|+|+
T Consensus 102 G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i~~-~~~~~~~~~~GT~V~v~--f~~~~~r~ 178 (488)
T TIGR01052 102 GQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEIVE-KGEWNKPGWRGTRIELE--FKGVSYRR 178 (488)
T ss_pred CCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCeecc-eeecCCCCCCceEEEEE--ECCceeec
Confidence 999999999988886 8999999988889988884 687763 233333 479999999 99999984
Q ss_pred hcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECC
Q 005789 178 KTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (677)
Q Consensus 178 k~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g 212 (677)
+. .+|.+.++++|++||++.|+|.+..
T Consensus 179 ~k--------~~i~e~l~~~Al~nP~~~i~l~~~~ 205 (488)
T TIGR01052 179 SK--------QGVYEYLRRTAVANPHAKIVLVDPD 205 (488)
T ss_pred cH--------HHHHHHHHHHHhhCCCeEEEEEeCC
Confidence 21 5899999999999999999999754
No 24
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.77 E-value=3.8e-18 Score=191.27 Aligned_cols=155 Identities=25% Similarity=0.337 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhhhhCCCC-----ceEEEEe----eCCeeEEEEEeCCCCCCcccHhhhhhcc-cCCCccccccccccccc
Q 005789 42 PVSAVKELVENSLDADAT-----SINVVVK----DGGLKLIQVSDDGHGIRYEDLPILCERH-TTSKLSKYEDLQSIKSM 111 (677)
Q Consensus 42 p~~~vkELveNSiDAgAt-----~I~V~i~----~~g~~~i~V~DNG~GI~~~dl~~~~~r~-~TSK~~~~~dl~~i~t~ 111 (677)
..++|+|||+||+||+++ .|.|.+. .++...|+|.|||.||++++++.+|.+| +|||+... ..+.
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~-----~~s~ 111 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNL-----RQSR 111 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccccccc-----ccCC
Confidence 589999999999999876 5888876 3455679999999999999999999885 88887532 3578
Q ss_pred Cccchhhhhhhcce------EEEEEEEeCCCcceEEEEEe------CCeecc-ccccccCCCceEEEEEeeeccchhhhh
Q 005789 112 GFRGEALASMTYVG------HVTVTTITKGHLHGYRVSYR------DGVMES-EPKACAAVKGTQIMVENLFYNMIARRK 178 (677)
Q Consensus 112 GfRGeALaSIs~vs------~v~I~Tr~~~~~~~~~~~~~------~g~~~~-~~~~~~~~~GTtV~v~dLF~n~PvRrk 178 (677)
|++|++|++...++ .++|.|+..+...+|.+.+. .|.+.. ...+....+||+|.|+ ||.|++.|
T Consensus 112 G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~~~~~~~~GT~V~V~-l~~~~~~~-- 188 (535)
T PRK04184 112 GQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREEVDWDRWHGTRVELE-IEGDWYRA-- 188 (535)
T ss_pred CCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccccCCCCCCCEEEEEE-ECCcChhh--
Confidence 99999998876665 37899999877667877763 455542 1223567899999999 88888854
Q ss_pred cccCCchhHHHHHHHHHHHHhcCCCeEEEEEECC
Q 005789 179 TLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (677)
Q Consensus 179 ~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g 212 (677)
.++|.+.|+++|++||++.|++.+.+
T Consensus 189 --------~~~I~e~i~r~Al~nP~~~~~l~~~~ 214 (535)
T PRK04184 189 --------KQRIYEYLKRTAIVNPHARITFKDPD 214 (535)
T ss_pred --------HHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 45789999999999999999999654
No 25
>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signalling complex for repair. The N-terminal region of MutL contains the ATPase domain and the C-terminal is involved in dimerisation []. ; GO: 0005524 ATP binding, 0006298 mismatch repair; PDB: 3NCV_B 1X9Z_B 3GAB_C 3KDK_A 3KDG_A.
Probab=99.72 E-value=1.2e-17 Score=158.53 Aligned_cols=132 Identities=21% Similarity=0.352 Sum_probs=106.6
Q ss_pred cEEEEEEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHhcCc-CeEecCCCcChhHHHhhhccccccccccCcCchhH
Q 005789 471 CSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHF-NAIQLSDPAPLSELLMLALKEEDLDVENSENDDLK 549 (677)
Q Consensus 471 ~~~VG~vd~~yiLiQ~~~~LyLIDqhaahEei~YQ~~l~~fgn~-~~q~L~~P~~l~~Ll~l~l~~~~~~~~~~~~~~~~ 549 (677)
.+++||++++|||+|.+++||||||||||||+.||++++++.+- .+|.|..|+.+. ++.
T Consensus 3 ~~vlgq~~~~yil~~~~~~L~liDqHAAhERi~~E~l~~~~~~~~~~q~Ll~P~~~~------ls~-------------- 62 (144)
T PF08676_consen 3 LKVLGQLDNKYILAESEDGLYLIDQHAAHERILYEKLLKQLEEGEQSQPLLFPIELE------LSP-------------- 62 (144)
T ss_dssp -EEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHCCHCS-EEEEEEEEEEE--------H--------------
T ss_pred eeeHhHhCCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHhhccCCCceecCCCccCC------CCH--------------
Confidence 68999999999999999999999999999999999999999433 889999998887 422
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcceEEeeCCC----eeccCcccCCCCCCCCCHHHHHHHhcCCCCCchHHHHHHHHHHHH
Q 005789 550 EKIAEMNTELLKQKAEMLEEYFCVKIDTRGN----LSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAAAL 625 (677)
Q Consensus 550 ~~~~~~~~~~L~~~~emL~eYFgi~Ie~~G~----L~siP~lL~~y~P~~~~Lp~fl~~La~~v~w~~E~~cf~~i~r~l 625 (677)
.+.+.+.++.+.|++ +||+++.+|. |+++|.++...... +.+++++..+.... +. .+.++.++..+
T Consensus 63 -----~e~~~l~~~~~~L~~-~Gf~~~~~~~~~~~v~~vP~~l~~~~~~-~~l~~ll~~l~~~~--~~-~~~~~~~~~~~ 132 (144)
T PF08676_consen 63 -----QEAELLEENKEELEK-LGFEIEEFGENSIIVRSVPAILREQDLE-ELLRELLEELQEKE--ES-PEIIEELLASM 132 (144)
T ss_dssp -----HHHHHHHHHHHHHHH-TT-EEEEESTTEEEEEEEECCCTTSSHH-HHHHHHHHHHCTCS--S--CCCHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHh-CCeEEEEecCCEEEEEEeCcccccccHH-HHHHHHHHHHHhCC--Cc-HHHHHHHHHHH
Confidence 267899999999999 7999997666 99999999985544 56777777776544 22 56788899999
Q ss_pred hhccccC
Q 005789 626 GNFYAMH 632 (677)
Q Consensus 626 A~fys~~ 632 (677)
|+--|+.
T Consensus 133 AC~~Aik 139 (144)
T PF08676_consen 133 ACRSAIK 139 (144)
T ss_dssp HTTSSSS
T ss_pred HHHHhhc
Confidence 9887653
No 26
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=99.71 E-value=3.2e-17 Score=146.41 Aligned_cols=101 Identities=33% Similarity=0.475 Sum_probs=92.1
Q ss_pred HHHHHHHhChhhhccceEecccccCCCCCcceEEEEEEeCCCCC-CCCceEEEEEcCeecC-ChhHHHHHHHHHhhcC--
Q 005789 227 LDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVE-CAPLKRAVEIVYAATF-- 302 (677)
Q Consensus 227 ~~~i~~i~G~~~~~~L~~i~~~~~~~~~~~~~~v~G~is~~~~~-~~k~~q~ifIN~R~V~-~~~l~kaI~~~y~~~l-- 302 (677)
.+++..+||......++.++... .+++++|+++.++.. .++..||+|||||++. +..+.++|.++|..++
T Consensus 2 ~~~i~~~~g~~~~~~~~~~~~~~------~~~~v~g~l~~~~~~~~~~~~~~~fvN~r~v~~~~~~~~~i~~~~~~~~~~ 75 (107)
T cd00329 2 KDRLAEILGDKVADKLIYVEGES------DGFRVEGAISYPDSGRSSKDRQFSFVNGRPVREGGTHVKAVREAYTRALNG 75 (107)
T ss_pred HhHHHHHhCHHhHhhcEEEeccC------CCEEEEEEEeCCccCcccCCcEEEEEcCeEEcCCHHHHHHHHHHHHHHhcc
Confidence 57899999999988899988765 679999999998764 2367899999999999 9999999999999999
Q ss_pred -CCCCCceEEEEEEcCCCccccccCCCCCeEe
Q 005789 303 -PKASKPFIYMSIVLPPEHVDVNVHPTKREVS 333 (677)
Q Consensus 303 -p~~~~P~~~L~i~i~p~~vDVNVhPtK~eV~ 333 (677)
+.+++|+++|++.+|++.+||||||+|++|+
T Consensus 76 ~~~~~~p~~vl~i~~~~~~~d~nv~p~K~~v~ 107 (107)
T cd00329 76 DDVRRYPVAVLSLKIPPSLVDVNVHPTKEEVR 107 (107)
T ss_pred cCCCCCCEEEEEEEeChHHeeeCCCCCccccC
Confidence 9999999999999999999999999999984
No 27
>smart00853 MutL_C MutL C terminal dimerisation domain. MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation.
Probab=99.64 E-value=1.1e-15 Score=143.57 Aligned_cols=110 Identities=20% Similarity=0.366 Sum_probs=93.1
Q ss_pred cEEEEEEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHhc--Cc-CeEecCCCcChhHHHhhhccccccccccCcCch
Q 005789 471 CSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFA--HF-NAIQLSDPAPLSELLMLALKEEDLDVENSENDD 547 (677)
Q Consensus 471 ~~~VG~vd~~yiLiQ~~~~LyLIDqhaahEei~YQ~~l~~fg--n~-~~q~L~~P~~l~~Ll~l~l~~~~~~~~~~~~~~ 547 (677)
+.++||++++||+++.+++||+|||||||||++||++++.+. .. .+|.|..|+.+. ++.
T Consensus 2 ~~~l~qv~~~yil~~~~~~l~liDqhaA~ERi~~e~l~~~~~~~~~~~~Q~Ll~P~~i~------l~~------------ 63 (136)
T smart00853 2 GRVLGQVHGTYILAESEDGLVLIDQHAAHERILYEQLKAKLQAGLLEKSQPLLIPVILE------LSP------------ 63 (136)
T ss_pred ccEEEEEcCEEEEEEcCCCEEEEEhHHHHHHHHHHHHHHHHhcCCCccccccCCCEEEE------cCH------------
Confidence 568999999999999999999999999999999999999873 33 379999998887 422
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcceEEeeCCC----eeccCcccCCCCCCCCCHHHHHHHhcC
Q 005789 548 LKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGN----LSRLPIILDQYTPDMDRIPEFVLCLGN 607 (677)
Q Consensus 548 ~~~~~~~~~~~~L~~~~emL~eYFgi~Ie~~G~----L~siP~lL~~y~P~~~~Lp~fl~~La~ 607 (677)
...+.+.++.+.|++ +||+++.+|. |+++|.++...... +.+++++..+..
T Consensus 64 -------~e~~~l~~~~~~l~~-~Gf~~~~~~~~~~~i~~vP~~l~~~~~~-~~l~~ll~~l~~ 118 (136)
T smart00853 64 -------EEAALLEEHQELLAR-LGFELEIFGGQSVILRSVPALLRQQNLQ-ELIPELLDLLAE 118 (136)
T ss_pred -------HHHHHHHHHHHHHHH-cCeEEEccCCCEEEEEeECccccCcCHH-HHHHHHHHHHHh
Confidence 267789999999999 7999998876 99999998876554 677788777765
No 28
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.54 E-value=3.6e-15 Score=140.70 Aligned_cols=101 Identities=33% Similarity=0.520 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHhhhhCCCCceEEEEeeC--CeeEEEEEeCCCCCCcccHhhhhhcccCCCcccccccccccccCccchh-
Q 005789 41 RPVSAVKELVENSLDADATSINVVVKDG--GLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA- 117 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgAt~I~V~i~~~--g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~i~t~GfRGeA- 117 (677)
+|..||+|||+||+||+|++|.|.+... +...|.|.|||.||+.++|..+|..+.++|... ....++|++|.+
T Consensus 2 ~~~~al~ElI~Ns~DA~a~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~----~~~~~~G~~G~G~ 77 (137)
T PF13589_consen 2 SPEDALRELIDNSIDAGATNIKISIDEDKKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSE----KDRQSIGRFGIGL 77 (137)
T ss_dssp SCTHHHHHHHHHHHHHHHHHEEEEEEEETTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHH----HHGGGGGGGTSGC
T ss_pred cHHHHHHHHHHHHHHccCCEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHHhccccCCCCCch----hhhhcCCCcceEH
Confidence 3578999999999999999999999753 455799999999999999999888777777421 134568888877
Q ss_pred -hhhhhcceEEEEEEEeCCCcceEEEEEe
Q 005789 118 -LASMTYVGHVTVTTITKGHLHGYRVSYR 145 (677)
Q Consensus 118 -LaSIs~vs~v~I~Tr~~~~~~~~~~~~~ 145 (677)
+|+++...+++|+|++.+...++.+.+.
T Consensus 78 k~A~~~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 78 KLAIFSLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp GGGGGGTEEEEEEEEESTTSSSEEEEEEE
T ss_pred HHHHHHhcCEEEEEEEECCCCcEEEEEEe
Confidence 5666666689999999998888887764
No 29
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.47 E-value=3.1e-13 Score=145.05 Aligned_cols=164 Identities=24% Similarity=0.289 Sum_probs=123.3
Q ss_pred ccCHHHHHHHHHHhhhhCC-----CCceEEEEeeCCee--EEEEEeCCCCCCcccHhhhh-hcccCCCcccccccccccc
Q 005789 39 IQRPVSAVKELVENSLDAD-----ATSINVVVKDGGLK--LIQVSDDGHGIRYEDLPILC-ERHTTSKLSKYEDLQSIKS 110 (677)
Q Consensus 39 I~~p~~~vkELveNSiDAg-----At~I~V~i~~~g~~--~i~V~DNG~GI~~~dl~~~~-~r~~TSK~~~~~dl~~i~t 110 (677)
+-++.++|+|||+||+||. =..|.|.|...|.. .+.|.|||.||+.+.++.+| .-++.||++...+-.....
T Consensus 34 ~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqG 113 (538)
T COG1389 34 IRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQG 113 (538)
T ss_pred hhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhcccccc
Confidence 4468899999999999986 24788888765443 68899999999999999997 4579999976656666777
Q ss_pred cCccchhhhhhhcceE-EEEEEEeCCCcceEEEEEe------CCeeccc--cccccCCCceEEEEEeeeccchhhhhccc
Q 005789 111 MGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYR------DGVMESE--PKACAAVKGTQIMVENLFYNMIARRKTLQ 181 (677)
Q Consensus 111 ~GfRGeALaSIs~vs~-v~I~Tr~~~~~~~~~~~~~------~g~~~~~--~~~~~~~~GTtV~v~dLF~n~PvRrk~l~ 181 (677)
+|-.|..|+|...-++ +.|.|+|.++..+|..... .+.++.. .....+.+||+|.++ |=.|...+++
T Consensus 114 iGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~-~~~~~~~~~~--- 189 (538)
T COG1389 114 IGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELE-LKGVWYRAKR--- 189 (538)
T ss_pred ccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEE-ecccchhhcc---
Confidence 7888888999888886 9999999997777755442 2334321 223467899999997 2233333322
Q ss_pred CCchhHHHHHHHHHHHHhcCCCeEEEEEECC
Q 005789 182 NSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (677)
Q Consensus 182 ~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g 212 (677)
+-+.+.+.+-|+++|+..+.|..-.
T Consensus 190 ------qgi~eYlkrtaiinPhA~I~l~dPd 214 (538)
T COG1389 190 ------QGIYEYLKRTAIINPHARIVLKDPD 214 (538)
T ss_pred ------cCHHHHHHHHhhcCCceEEEEECCC
Confidence 1267889999999999999998743
No 30
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=99.43 E-value=1e-11 Score=143.55 Aligned_cols=242 Identities=17% Similarity=0.183 Sum_probs=164.4
Q ss_pred ccccCChHHHHHHhcCCcccC-----HHHHHHHHHHhhhh----CCCCceEEEEeeCCeeEEEEEeCCCCCCccc-----
Q 005789 21 KIHRLEESVVNRIAAGEVIQR-----PVSAVKELVENSLD----ADATSINVVVKDGGLKLIQVSDDGHGIRYED----- 86 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~~-----p~~~vkELveNSiD----AgAt~I~V~i~~~g~~~i~V~DNG~GI~~~d----- 86 (677)
.|+.|..--.-|.+.|.+|.+ +...|.|+|+||+| ..|+.|.|.+..+| +|+|.|||.||+.+-
T Consensus 9 ~i~~L~glE~VRkRPgMYIGst~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~dg--sitV~DnGrGIPv~~h~~~~ 86 (637)
T TIGR01058 9 AIKILEGLDAVRKRPGMYIGSTDSKGLHHLVWEIVDNSVDEVLAGYADNITVTLHKDN--SITVQDDGRGIPTGIHQDGN 86 (637)
T ss_pred HCeeecccHHHhcCCCCeECCCCcchhheehhhhhcchhhhhhcCCCcEEEEEEcCCC--eEEEEECCCcccCcccCcCC
Confidence 599999999999999999864 57899999999999 45999999999887 599999999999742
Q ss_pred ---Hhhh-hhcccCCCcccccccccccccCccchhhhhhhcceE-EEEEEEeCCCcceEEEEEeCC-eeccccc--cccC
Q 005789 87 ---LPIL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDG-VMESEPK--ACAA 158 (677)
Q Consensus 87 ---l~~~-~~r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs~-v~I~Tr~~~~~~~~~~~~~~g-~~~~~~~--~~~~ 158 (677)
++.+ +.-|+.+|+.+ -..-.+-|++|.+++...++|. ++|+++..+ .-|+..|.+| ..+..++ ....
T Consensus 87 ~~~~E~v~t~LhaGgkfd~---~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~g--k~~~q~f~~Gg~~~~~l~~~~~~~ 161 (637)
T TIGR01058 87 ISTVETVFTVLHAGGKFDQ---GGYKTAGGLHGVGASVVNALSSWLEVTVKRDG--QIYQQRFENGGKIVQSLKKIGTTK 161 (637)
T ss_pred CccceeEEEEecccCcCCC---CcccccCCcccccccccceeeceEEEEEEECC--EEEEEEEecCCcCcCCcccccCCC
Confidence 2222 34577787643 2233567999999999999995 999998655 4588899875 6543221 2335
Q ss_pred CCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCee-eEEEEeCCCCCHHHHHHHHhChh
Q 005789 159 VKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAA-RADVHSIATSSRLDSIRTVYGVS 237 (677)
Q Consensus 159 ~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~~-~~~l~t~~~~s~~~~i~~i~G~~ 237 (677)
.+||+|+.. |....| ....-.+..|.+.++.+|..+|++.+++...... ...|... +.+.+-+..+-...
T Consensus 162 ~~GT~V~F~------PD~~iF-~~~~f~~d~l~~RlrelA~Ln~GL~I~l~der~~~~~~f~~~--~Gl~~yv~~l~~~k 232 (637)
T TIGR01058 162 KTGTLVHFH------PDPTIF-KTTQFNSNIIKERLKESAFLLKKLKLTFTDKRTNKTTVFFYE--NGLVDFVDYINETK 232 (637)
T ss_pred CCceEEEEE------eCHHHc-CCCccCHHHHHHHHHHHhccCCCcEEEEEecCCCceEEEEcC--cCHHHHHHHhcCCC
Confidence 799999985 776665 3334456779999999999999999999864311 1224443 33444444432111
Q ss_pred -hhccceEecccccCCCCCcceEEEEEEeCCCCCCCCceEEEEEcCeecC
Q 005789 238 -VASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVE 286 (677)
Q Consensus 238 -~~~~L~~i~~~~~~~~~~~~~~v~G~is~~~~~~~k~~q~ifIN~R~V~ 286 (677)
.....+.+.... .++.++.-+.-.+. ....++-|||+-+-.
T Consensus 233 ~~l~~~i~~~~~~------~~~~vevAl~~~~~--~~e~~~SFvN~I~T~ 274 (637)
T TIGR01058 233 ETLSQVTYFEGEK------NGIEVEVAFQFNDG--DSENILSFANSVKTK 274 (637)
T ss_pred CcCCccEEEEEEE------CCcEEEEEEEEcCC--CCeEEEEeECCccCC
Confidence 111122232221 23445544443221 123588999998765
No 31
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=99.36 E-value=1.4e-11 Score=138.10 Aligned_cols=276 Identities=18% Similarity=0.226 Sum_probs=182.0
Q ss_pred cccccCChHHHHHHhcCCccc------CHHHHHHHHHHhhhh---CC-CCceEEEEeeCCeeEEEEEeCCCCCCccc---
Q 005789 20 PKIHRLEESVVNRIAAGEVIQ------RPVSAVKELVENSLD---AD-ATSINVVVKDGGLKLIQVSDDGHGIRYED--- 86 (677)
Q Consensus 20 ~~I~~L~~~v~~kIaAgevI~------~p~~~vkELveNSiD---Ag-At~I~V~i~~~g~~~i~V~DNG~GI~~~d--- 86 (677)
..|+.|..--.-|.+.|.+|. .+.+.|.|.|+||+| || |+.|.|.+..+| +|+|.|||.|||-+-
T Consensus 9 ~~I~vL~GLEaVRkRPGMYIGst~~~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~--sisV~DnGRGIPvdiH~~ 86 (635)
T COG0187 9 SSIQVLEGLEAVRKRPGMYIGSTGDGRGLHHLVWEVVDNSIDEALAGYADRIDVTLHEDG--SISVEDNGRGIPVDIHPK 86 (635)
T ss_pred hHceeccCcHHhhcCCCceeccCCCCCcceeeEeEeeechHhHHhhCcCcEEEEEEcCCC--eEEEEECCCCCccccCCC
Confidence 359999998889999999975 467899999999999 66 999999999888 589999999999776
Q ss_pred -----Hhhhh-hcccCCCcccccccccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCeecccccc---c
Q 005789 87 -----LPILC-ERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPKA---C 156 (677)
Q Consensus 87 -----l~~~~-~r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~~~~~~~~---~ 156 (677)
++.++ .-||.+|+.. -..-.+-|.+|.+.+-..++| +++|+++..+ .-|+..|++|........ |
T Consensus 87 ~~~~~vEvI~T~LHAGGKFd~---~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~g--k~y~q~f~~G~~~~~l~~ig~~ 161 (635)
T COG0187 87 EKVSAVEVIFTVLHAGGKFDN---DSYKVSGGLHGVGVSVVNALSTWLEVEVKRDG--KIYRQRFERGVPVTPLEVIGST 161 (635)
T ss_pred CCCCceEEEEEeeccCcccCC---CccEeecCCCccceEEEecccceEEEEEEECC--EEEEEEEeCCCcCCCceecccC
Confidence 33333 5588888764 223357789999988888888 5999998876 458999999887532221 1
Q ss_pred -cCCCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCe--eeEEEEeCCCCCHHHHHHHH
Q 005789 157 -AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA--ARADVHSIATSSRLDSIRTV 233 (677)
Q Consensus 157 -~~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~--~~~~l~t~~~~s~~~~i~~i 233 (677)
...+||+|+.. |.-..| .+..-.+..|...++.+|-.++++.+.+.+.-. ....|+..+ -+.+-+..+
T Consensus 162 ~~~~~GT~V~F~------PD~~iF-~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~~~~~~~~~y~~--Gl~~yv~~l 232 (635)
T COG0187 162 DTKKTGTKVRFK------PDPEIF-GETEFDYEILKRRLRELAFLNKGVKITLTDERTGEEKKEFHYEG--GLKDYVEYL 232 (635)
T ss_pred CCCCCccEEEEE------cChHhc-CCcccCHHHHHHHHHHHhccCCCCEEEEEeccCCcccceeeccc--HHHHHHHHH
Confidence 23679999974 655443 335667889999999999999999988876432 111244432 244444433
Q ss_pred hChh-h-hccceEecccccCCCCCcceEEEEEEeCCCCCCCCceEEEEEcCeecCCh---------hHHHHHHHHHhh--
Q 005789 234 YGVS-V-ASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECA---------PLKRAVEIVYAA-- 300 (677)
Q Consensus 234 ~G~~-~-~~~L~~i~~~~~~~~~~~~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~~---------~l~kaI~~~y~~-- 300 (677)
-... . ....+.+.. +. .++.++--+.-.+. -...++-|+|+-+-... .|.++|++..+.
T Consensus 233 ~~~k~~l~~~~~~~~~----~~--~~~~vEvA~q~~d~--~~e~~~SFvNnI~T~eGGTH~~Gfr~altr~in~y~~~~~ 304 (635)
T COG0187 233 NKGKTPLHEEIFYFNG----EK--DGIAVEVALQWNDG--YSENILSFVNNIPTREGGTHEAGFRSALTRAINEYAKKKN 304 (635)
T ss_pred hcCCCccccCceeccc----Cc--cceEEEEEEEEecC--CceEEEEeecCccCCCCchHHHHHHHHHHHHHHHHHHHhC
Confidence 3221 1 111111111 11 23334433332221 13457899999876532 355555544332
Q ss_pred cCCCC--------CCceEEEEEEcCCC
Q 005789 301 TFPKA--------SKPFIYMSIVLPPE 319 (677)
Q Consensus 301 ~lp~~--------~~P~~~L~i~i~p~ 319 (677)
.++++ ..-.++|++.+|-.
T Consensus 305 ~~k~~~l~g~Diregl~aviSvki~~P 331 (635)
T COG0187 305 LLKEGDLTGDDIREGLTAVISVKIPDP 331 (635)
T ss_pred cCcccCCCHHHHhhccEEEEEEECCCC
Confidence 22221 23368899999844
No 32
>PRK14083 HSP90 family protein; Provisional
Probab=99.34 E-value=3.1e-11 Score=138.61 Aligned_cols=281 Identities=14% Similarity=0.139 Sum_probs=165.8
Q ss_pred cCCcccCHHHHHHHHHHhhhhCCCC----------ceEEEE-eeCCeeEEEEEeCCCCCCcccHhhhhhcc-cCCCcccc
Q 005789 35 AGEVIQRPVSAVKELVENSLDADAT----------SINVVV-KDGGLKLIQVSDDGHGIRYEDLPILCERH-TTSKLSKY 102 (677)
Q Consensus 35 AgevI~~p~~~vkELveNSiDAgAt----------~I~V~i-~~~g~~~i~V~DNG~GI~~~dl~~~~~r~-~TSK~~~~ 102 (677)
+.....+|..+|+|||.||.||++. .|.|.+ +.+ ...|.|.|||.||+.+++...+... ..+|....
T Consensus 17 ~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~-~~~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~ 95 (601)
T PRK14083 17 SRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELTDAG-GGTLIVEDNGIGLTEEEVHEFLATIGRSSKRDEN 95 (601)
T ss_pred HHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCC-CcEEEEEeCCCCCCHHHHHHHHhhhccchhhhhh
Confidence 4567788999999999999999876 788888 443 3469999999999999998765333 33443211
Q ss_pred -cccccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEe-CCeecccc-ccccCCCceEEEEEeeeccchhhhh
Q 005789 103 -EDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYR-DGVMESEP-KACAAVKGTQIMVENLFYNMIARRK 178 (677)
Q Consensus 103 -~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~GTtV~v~dLF~n~PvRrk 178 (677)
.+ ......|..|.++.|.-.|| +++|+||..+...+|.+.-. +|....+. ......+||+|++.- -+.-+.
T Consensus 96 ~~~-~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~~~~~~~~~GT~I~L~l----~~d~~~ 170 (601)
T PRK14083 96 LGF-ARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRKLETERAEPGTTVYLRP----RPDAEE 170 (601)
T ss_pred hcc-cccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEeCCCCCCCCCCEEEEEe----cCchhh
Confidence 00 12346799999999988888 69999999865567766543 44443221 123457999999962 011111
Q ss_pred cccCCchhHHHHHHHHHHHHhcCC-CeEEEEE--ECCeeeEEEEeCCC------CCHHHHHHHHhChhhhccceEecccc
Q 005789 179 TLQNSSDDYTKIVDLLSRMAIHHT-NVSFSCR--KHGAARADVHSIAT------SSRLDSIRTVYGVSVASNLVQLEASE 249 (677)
Q Consensus 179 ~l~~~~~e~~~i~~~v~~yAl~~p-~v~F~l~--~~g~~~~~l~t~~~------~s~~~~i~~i~G~~~~~~L~~i~~~~ 249 (677)
+ .+-.++.+++.+|+-+-| -|.+... .-+..+..|.-++. ..+.+-.+.+|+. .-|..+++..
T Consensus 171 ~-----~~~~~i~~li~~ys~~i~~pI~l~~~~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~~---~Pl~~ih~~~ 242 (601)
T PRK14083 171 W-----LERETVEELAKKYGSLLPVPIRVEGEKGGVNETPPPWTRDYPDPETRREALLAYGEELLGF---TPLDVIPLDV 242 (601)
T ss_pred h-----ccHHHHHHHHHHHhccCCCCcccCCceeeecCCCCCccCCccccCccHHHHHHHHHHhcCC---Cchheeeecc
Confidence 2 233578888999976533 3333210 11112334433221 1255667777772 2233333333
Q ss_pred cCCCCCcceEEEEEEe-CCCC--CCCCceEEEEEcCeecCChhHHHHHHHHHhhcCCCCCCceEEEEEEcCCCccccccC
Q 005789 250 YNDSSSFVFKMDGYVS-NSNY--VAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVH 326 (677)
Q Consensus 250 ~~~~~~~~~~v~G~is-~~~~--~~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNVh 326 (677)
+ +....|.+- -|.. ...+...-+|+|+-+|.... ...+|. | ..++.--++.+.+-.||.
T Consensus 243 --e----~~~~~~~Ly~iP~~~~~~~~~~v~LY~~rVfI~d~~---------~~lLP~--w-l~FvrGVVDS~DLpLNvS 304 (601)
T PRK14083 243 --P----SGGLEGVAYVLPYAVSPAARRKHRVYLKRMLLSEEA---------ENLLPD--W-AFFVRCVVNTDELRPTAS 304 (601)
T ss_pred --c----chhheEEEEecCCCCCccccCceEEEeeeeEeecch---------hhhhHH--H-HHHheeeeecCCCCCccC
Confidence 1 112244332 2211 11234457999999987542 133332 1 224556677777778874
Q ss_pred CCCCeEecCChhHHHHHHHHHHHHHH
Q 005789 327 PTKREVSLLNQELIVEKIQSAVELKL 352 (677)
Q Consensus 327 PtK~eV~F~~e~~I~~~I~~~l~~~L 352 (677)
|| .+.++.++..|++.|-+.+
T Consensus 305 ---RE--~LQ~~~~l~~ir~~i~kki 325 (601)
T PRK14083 305 ---RE--ALYEDDALAAVREELGEAI 325 (601)
T ss_pred ---HH--HHccCHHHHHHHHHHHHHH
Confidence 33 3456666666666665554
No 33
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=99.18 E-value=5.5e-10 Score=130.70 Aligned_cols=180 Identities=21% Similarity=0.286 Sum_probs=138.2
Q ss_pred ccccCChHHHHHHhcCCcccC-----HHHHHHHHHHhhhh---CC-CCceEEEEeeCCeeEEEEEeCCCCCCcccH----
Q 005789 21 KIHRLEESVVNRIAAGEVIQR-----PVSAVKELVENSLD---AD-ATSINVVVKDGGLKLIQVSDDGHGIRYEDL---- 87 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~~-----p~~~vkELveNSiD---Ag-At~I~V~i~~~g~~~i~V~DNG~GI~~~dl---- 87 (677)
.|+.|..--.-|.+.|.+|.+ +.+.|.|+|+||+| || |+.|.|.+..+| +|+|.|||.|||.+--
T Consensus 104 ~I~vLeGLEaVRkRPGMYIGst~~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~Dg--sItV~DnGRGIPvd~h~k~g 181 (903)
T PTZ00109 104 DIVVLEGLEAVRKRPGMYIGNTDEKGLHQLLFEILDNSVDEYLAGECNKITVVLHKDG--SVEISDNGRGIPCDVSEKTG 181 (903)
T ss_pred hCeehhccHHHhcCCCceeCCCCCCcceEEEEEEeeccchhhccCCCcEEEEEEcCCC--eEEEEeCCccccccccccCC
Confidence 599999999999999999975 57799999999999 55 899999998877 5999999999997543
Q ss_pred ----hhh-hhcccCCCccccc-------------cc------------------------ccccccCccchhhhhhhcce
Q 005789 88 ----PIL-CERHTTSKLSKYE-------------DL------------------------QSIKSMGFRGEALASMTYVG 125 (677)
Q Consensus 88 ----~~~-~~r~~TSK~~~~~-------------dl------------------------~~i~t~GfRGeALaSIs~vs 125 (677)
+.+ ..-|+.+|+..-. |. ..-.+-|.+|.+++..-++|
T Consensus 182 ~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS 261 (903)
T PTZ00109 182 KSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALS 261 (903)
T ss_pred CcceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeecc
Confidence 233 3558888886420 00 11247889999999999998
Q ss_pred -EEEEEEEeCCCcceEEEEEeCCeeccccc--ccc-CCCceEEEEEeeeccchh-hhhcccC-Cc-------------hh
Q 005789 126 -HVTVTTITKGHLHGYRVSYRDGVMESEPK--ACA-AVKGTQIMVENLFYNMIA-RRKTLQN-SS-------------DD 186 (677)
Q Consensus 126 -~v~I~Tr~~~~~~~~~~~~~~g~~~~~~~--~~~-~~~GTtV~v~dLF~n~Pv-Rrk~l~~-~~-------------~e 186 (677)
.++|+++..+. -|...|.+|.+....+ .+. ..+||+|+.. |. ..-| .. .. -.
T Consensus 262 ~~l~VeV~RdGK--~y~q~F~rG~~v~pLkvig~~~~~tGT~VtF~------PD~~~IF-~~~~~~~~~~~~~~~~~~F~ 332 (903)
T PTZ00109 262 SFLKVDVFKGGK--IYSIELSKGKVTKPLSVFSCPLKKRGTTIHFL------PDYKHIF-KTHHQHTETEEEEGCKNGFN 332 (903)
T ss_pred CeEEEEEEECCE--EEEEEeCCCcccCCccccCCcCCCCceEEEEE------eCcchhc-CccccccccccccccccccC
Confidence 59999988763 6999999998753222 232 4689999985 66 4333 22 11 25
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEEC
Q 005789 187 YTKIVDLLSRMAIHHTNVSFSCRKH 211 (677)
Q Consensus 187 ~~~i~~~v~~yAl~~p~v~F~l~~~ 211 (677)
+..|.+.++.+|-.+|++.+.|...
T Consensus 333 ~d~L~~RLrElAfLNpGL~I~L~De 357 (903)
T PTZ00109 333 LDLIKNRIHELSYLNPGLTFYLVDE 357 (903)
T ss_pred HHHHHHHHHHHhccCCCcEEEEEec
Confidence 6789999999999999999999864
No 34
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=99.11 E-value=3.1e-09 Score=122.47 Aligned_cols=174 Identities=19% Similarity=0.235 Sum_probs=124.6
Q ss_pred cccCChHHHHHHhcCCccc----------------------CHHHHHHHHHHhhhh---C---C-CCceEEEEeeCCeeE
Q 005789 22 IHRLEESVVNRIAAGEVIQ----------------------RPVSAVKELVENSLD---A---D-ATSINVVVKDGGLKL 72 (677)
Q Consensus 22 I~~L~~~v~~kIaAgevI~----------------------~p~~~vkELveNSiD---A---g-At~I~V~i~~~g~~~ 72 (677)
|+.|..--.-+.+.|.+|- .+..++.|+|.||+| | | |+.|.|.++ +| +
T Consensus 4 i~~L~~lE~Vr~RPgmYIGs~~~~~~~~~~~~~~~~~~~~~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~-dg--s 80 (602)
T PHA02569 4 FKVLSDREHILKRPGMYIGSVAYEAHERFLFGKFTQVEYVPGLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK-NN--Q 80 (602)
T ss_pred eeEccchHHHhcCCCceeCCCCcccccceeecccccccccccceeeeehhhhhhhhhhhccCCCCCcEEEEEEc-CC--E
Confidence 5555555555555565554 346788999999999 4 5 899999999 76 5
Q ss_pred EEEEeCCCCCCcccH-----------hh-hhhcccCCCcccccccccccccCccchhhhhhhcceE-EEEEEEeCCCcce
Q 005789 73 IQVSDDGHGIRYEDL-----------PI-LCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGH-VTVTTITKGHLHG 139 (677)
Q Consensus 73 i~V~DNG~GI~~~dl-----------~~-~~~r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs~-v~I~Tr~~~~~~~ 139 (677)
|+|.|||.|||.+-- +. ++.-|+.+|+. |-+ -.+-|-+|.+++...++|. ++|+++..+ ..
T Consensus 81 isV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd---~~y-kvSGGlhGVG~svvNaLS~~~~V~v~~~~--~~ 154 (602)
T PHA02569 81 VTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFD---DTN-RVTGGMNGVGSSLTNFFSVLFIGETCDGK--NE 154 (602)
T ss_pred EEEEECCCcccCCcccccccccccceEEEEEeeccccccC---Ccc-eeeCCcCCccceeeeccchhhheEEEcCC--EE
Confidence 999999999997532 12 23557888872 333 3478999999999989984 888775433 45
Q ss_pred EEEEEeCCeeccc-cccccCCCceEEEEEeeeccchhhhhcccCCc---hhHHHHHHHHHHHHhcCCCeEEEEEEC
Q 005789 140 YRVSYRDGVMESE-PKACAAVKGTQIMVENLFYNMIARRKTLQNSS---DDYTKIVDLLSRMAIHHTNVSFSCRKH 211 (677)
Q Consensus 140 ~~~~~~~g~~~~~-~~~~~~~~GTtV~v~dLF~n~PvRrk~l~~~~---~e~~~i~~~v~~yAl~~p~v~F~l~~~ 211 (677)
|+..|.+|..... +......+||+|+.. |....| .... ..+..|.+.++.+|-.+|++.+.|...
T Consensus 155 ~~q~f~~G~~~~~~~~~~~~~~GT~V~F~------PD~~iF-~~~~~~~~~~~~l~~Rl~elA~Ln~Gl~I~l~de 223 (602)
T PHA02569 155 VTVNCSNGAENISWSTKPGKGKGTSVTFI------PDFSHF-EVNGLDQQYLDIILDRLQTLAVVFPDIKFTFNGK 223 (602)
T ss_pred EEEEecCCcccCCcccCCCCCCccEEEEE------ECHHHh-CCCccCccHHHHHHHHHHHHhcCCCCCEEEEEec
Confidence 8999999875422 112234689999985 766555 2211 136778899999999999999999754
No 35
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.10 E-value=2.7e-09 Score=124.24 Aligned_cols=150 Identities=20% Similarity=0.246 Sum_probs=100.6
Q ss_pred cCCcccCHHHHHHHHHHhhhhCCC----------------CceEEEE--eeCCeeEEEEEeCCCCCCcccHhhhhhcccC
Q 005789 35 AGEVIQRPVSAVKELVENSLDADA----------------TSINVVV--KDGGLKLIQVSDDGHGIRYEDLPILCERHTT 96 (677)
Q Consensus 35 AgevI~~p~~~vkELveNSiDAgA----------------t~I~V~i--~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~T 96 (677)
+.-...++.-.|+|||.||.||.. ..+.|.+ +..+. .|.|.|||.||+.+|+...+..-+.
T Consensus 19 i~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~-~L~I~DnGiGMt~edl~~~LgtIa~ 97 (701)
T PTZ00272 19 INTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENK-TLTVEDNGIGMTKADLVNNLGTIAR 97 (701)
T ss_pred HhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCC-EEEEEECCCCCCHHHHHHHhhhhhh
Confidence 344556678889999999999952 2344444 44443 6899999999999998765544443
Q ss_pred C--C-----cccccccccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeC-Ceecccccc-ccCCCceEEEE
Q 005789 97 S--K-----LSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRD-GVMESEPKA-CAAVKGTQIMV 166 (677)
Q Consensus 97 S--K-----~~~~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~-g~~~~~~~~-~~~~~GTtV~v 166 (677)
| | +..-. .....|-.|.+..|.-.|| +|+|+||..+. .+|.+...+ |.....+.+ ....+||+|++
T Consensus 98 SGt~~f~~~~~~~~---~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~-~~~~W~s~~~g~y~i~~~~~~~~~~GT~I~L 173 (701)
T PTZ00272 98 SGTKAFMEALEAGG---DMSMIGQFGVGFYSAYLVADRVTVTSKNNSD-ESYVWESSAGGTFTITSTPESDMKRGTRITL 173 (701)
T ss_pred cchHHHHHHhhccC---CccccCCCCcceEEEEEeccEEEEEEecCCC-ceEEEEECCCCcEEEEeCCCCCCCCCCEEEE
Confidence 3 1 11111 2346788889998888888 59999998764 588887754 343322212 12479999998
Q ss_pred EeeeccchhhhhcccCCch---hHHHHHHHHHHHHhcC
Q 005789 167 ENLFYNMIARRKTLQNSSD---DYTKIVDLLSRMAIHH 201 (677)
Q Consensus 167 ~dLF~n~PvRrk~l~~~~~---e~~~i~~~v~~yAl~~ 201 (677)
. |+.... +-.+|.++|.+|+-+-
T Consensus 174 ~------------Lk~d~~ef~~~~~i~~li~kYs~fi 199 (701)
T PTZ00272 174 H------------LKEDQMEYLEPRRLKELIKKHSEFI 199 (701)
T ss_pred E------------ECCchHHhccHHHHHHHHHHhcccc
Confidence 5 333222 2368999999998653
No 36
>PTZ00130 heat shock protein 90; Provisional
Probab=99.08 E-value=3.3e-09 Score=123.77 Aligned_cols=160 Identities=20% Similarity=0.264 Sum_probs=106.4
Q ss_pred HhcCCcccCHHHHHHHHHHhhhhCCC----------------CceEEEEe--eCCeeEEEEEeCCCCCCcccHhhhhhcc
Q 005789 33 IAAGEVIQRPVSAVKELVENSLDADA----------------TSINVVVK--DGGLKLIQVSDDGHGIRYEDLPILCERH 94 (677)
Q Consensus 33 IaAgevI~~p~~~vkELveNSiDAgA----------------t~I~V~i~--~~g~~~i~V~DNG~GI~~~dl~~~~~r~ 94 (677)
|-++....++.-+|+|||.||.||.+ +.+.|.|. ..+. .|+|.|||.||+.+|+..-+..-
T Consensus 80 iii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~-tLtI~DnGIGMT~eEl~~nLgTI 158 (814)
T PTZ00130 80 IIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKN-ILSITDTGIGMTKEDLINNLGTI 158 (814)
T ss_pred HHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCC-EEEEEECCCCCCHHHHHHHhhhh
Confidence 34567788899999999999999985 34444443 3333 68999999999999987655444
Q ss_pred cCCCcccc-ccc----ccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeC-Ceeccccc--cccCCCceEEE
Q 005789 95 TTSKLSKY-EDL----QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRD-GVMESEPK--ACAAVKGTQIM 165 (677)
Q Consensus 95 ~TSK~~~~-~dl----~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~-g~~~~~~~--~~~~~~GTtV~ 165 (677)
+.|--..| +.+ ....-.|-.|.++.|.-.|| +|+|+||..+ ..+|.|.-.+ |....... .....+||+|+
T Consensus 159 A~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~-~~~~~W~s~g~g~y~I~e~~~~~~~~rGT~I~ 237 (814)
T PTZ00130 159 AKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNN-DEQYIWESTADAKFTIYKDPRGSTLKRGTRIS 237 (814)
T ss_pred cccccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCC-CceEEEEECCCCcEEEEECCCCCCCCCCcEEE
Confidence 44421122 111 12346888899999998998 6999999876 4578776543 44422111 12347999999
Q ss_pred EEeeeccchhhhhcccCCch---hHHHHHHHHHHHHhcCC-CeEE
Q 005789 166 VENLFYNMIARRKTLQNSSD---DYTKIVDLLSRMAIHHT-NVSF 206 (677)
Q Consensus 166 v~dLF~n~PvRrk~l~~~~~---e~~~i~~~v~~yAl~~p-~v~F 206 (677)
+. |+.... +-.+|..+|.+|+-+-+ -|.+
T Consensus 238 Lh------------Lked~~efl~~~~ik~likkYS~fI~~PI~l 270 (814)
T PTZ00130 238 LH------------LKEDATNLMNDKKLVDLISKYSQFIQYPIYL 270 (814)
T ss_pred EE------------ECCchhhhccHHHHHHHHHHhhccCCCCEEE
Confidence 96 222222 34689999999987543 3444
No 37
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.8e-09 Score=119.46 Aligned_cols=282 Identities=18% Similarity=0.238 Sum_probs=162.0
Q ss_pred CCcccCHHHHHHHHHHhhhhCC------------------CCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCC
Q 005789 36 GEVIQRPVSAVKELVENSLDAD------------------ATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (677)
Q Consensus 36 gevI~~p~~~vkELveNSiDAg------------------At~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (677)
..+-..+.-.++|||.||-||- .-.|+|.++.+.. .++|.|||.||+++|+.....--|-|
T Consensus 22 hSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~k-TLtI~DNGIGMT~~Ev~~~LgTIAkS 100 (623)
T COG0326 22 HSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNK-TLTISDNGIGMTKDEVIENLGTIAKS 100 (623)
T ss_pred HhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCC-EEEEEeCCCCCCHHHHHHHHHHhhhc
Confidence 3345567788999999999983 2466666666544 58999999999999985432111111
Q ss_pred ----Cccccc-ccccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeC-CeeccccccccCC-CceEEEEEee
Q 005789 98 ----KLSKYE-DLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRD-GVMESEPKACAAV-KGTQIMVENL 169 (677)
Q Consensus 98 ----K~~~~~-dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~GTtV~v~dL 169 (677)
.+.... |-....-.|--|.++.|--.|| +|+|.||..++..+|.|.-++ |....++.. ..+ +||+|+..
T Consensus 101 gT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~ytv~~~~-~~~~~GT~I~L~-- 177 (623)
T COG0326 101 GTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYTVEDID-KEPRRGTEITLH-- 177 (623)
T ss_pred cHHHHHHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceEEeecc-CCCCCCcEEEEE--
Confidence 111110 1012344787789999998999 699999999988888666543 433322111 223 69999986
Q ss_pred eccchhhhhcccCCc---hhHHHHHHHHHHHHhcCC-CeEEEEEEC-----------CeeeEEEEeCCCCCHHHHHHHHh
Q 005789 170 FYNMIARRKTLQNSS---DDYTKIVDLLSRMAIHHT-NVSFSCRKH-----------GAARADVHSIATSSRLDSIRTVY 234 (677)
Q Consensus 170 F~n~PvRrk~l~~~~---~e~~~i~~~v~~yAl~~p-~v~F~l~~~-----------g~~~~~l~t~~~~s~~~~i~~i~ 234 (677)
|+... .+-.+|.++|.+|+-+-+ -|.+..... ++.+..|.-++..=..+.....|
T Consensus 178 ----------Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~~~~~~~~e~iN~~~alW~r~ksei~~eeY~eFY 247 (623)
T COG0326 178 ----------LKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEKDEEVIEWETINKAKALWTRNKSEITDEEYKEFY 247 (623)
T ss_pred ----------ECCchHHHhhhhHHHHHHHHHhcccccceEEeeeccccccchhHHHhccccCcccCChhhCChHHHHHHH
Confidence 33222 234689999999998754 344444221 11233443333222222222222
Q ss_pred C---hhhhccceEecccccCCCCCcceEEEEEEeCCC---C---C-CCCceEEEEEcCeecCChhHHHHHHHHHhhcCCC
Q 005789 235 G---VSVASNLVQLEASEYNDSSSFVFKMDGYVSNSN---Y---V-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPK 304 (677)
Q Consensus 235 G---~~~~~~L~~i~~~~~~~~~~~~~~v~G~is~~~---~---~-~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~ 304 (677)
- .....-|..++... + +.+...+++--|. + + ..+..+-+|||+-+|.... ..++|.
T Consensus 248 k~~~~d~~~Pl~~~h~~~--E---G~~ey~~ll~iP~~aPfdl~~~~~k~glkLYv~rVfI~Dd~---------~~llP~ 313 (623)
T COG0326 248 KHLAHDFDDPLLWIHNKV--E---GRLEYTALLFIPSKAPFDLFRRDRKRGLKLYVNRVFIMDDA---------EDLLPN 313 (623)
T ss_pred HHhhcccCCCeEEEeccc--c---cceEEEEEEEccCCCCcccccccccCCcEEEEeeeEEeCCh---------hhhhhH
Confidence 1 12222344444432 1 4466666654332 2 1 1245678999999997542 233332
Q ss_pred CCCceEEEEEEcCCCccccccCCCCCeEecCChhHHHHHHHHHHHHHHh
Q 005789 305 ASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 353 (677)
Q Consensus 305 ~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~l~~~L~ 353 (677)
| +.++.-.|+...+=.||. ||+ +.++.++..|++++-+.+.
T Consensus 314 --y-l~Fv~GvIDS~DLpLNvS---RE~--LQ~n~~l~~Irk~l~kkvl 354 (623)
T COG0326 314 --Y-LRFVRGVIDSEDLPLNVS---REI--LQQNRILAAIRKALTKKVL 354 (623)
T ss_pred --H-HhhheeeeecCCCCcccC---HHH--HccCHHHHHHHHHHHHHHH
Confidence 1 223444555556666663 444 5667777777777665553
No 38
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=98.96 E-value=4.7e-08 Score=120.03 Aligned_cols=158 Identities=17% Similarity=0.170 Sum_probs=116.5
Q ss_pred cCHHHHHHHHHHhhhhC-------C-CCceEEEEeeC-CeeEEEEEeCCCCCCcccH--------hhh-hhcccCCCccc
Q 005789 40 QRPVSAVKELVENSLDA-------D-ATSINVVVKDG-GLKLIQVSDDGHGIRYEDL--------PIL-CERHTTSKLSK 101 (677)
Q Consensus 40 ~~p~~~vkELveNSiDA-------g-At~I~V~i~~~-g~~~i~V~DNG~GI~~~dl--------~~~-~~r~~TSK~~~ 101 (677)
..+..++.|+|.||+|- | ++.|.|.|+.+ | .|+|.|||.|||.+-- +++ +.-|+.||+.
T Consensus 56 pGL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d~g--~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfd- 132 (1388)
T PTZ00108 56 PGLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEENG--EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYD- 132 (1388)
T ss_pred chhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEeccCC--eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCC-
Confidence 45678999999999992 3 79999999876 6 5999999999997542 233 3557888864
Q ss_pred ccccccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCC--eeccccc--cccC-CCceEEEEEeeeccchh
Q 005789 102 YEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDG--VMESEPK--ACAA-VKGTQIMVENLFYNMIA 175 (677)
Q Consensus 102 ~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g--~~~~~~~--~~~~-~~GTtV~v~dLF~n~Pv 175 (677)
|-..-.|-|.+|.+......+| .++|+++......-|+..|.+| +.. .+. .+.. .+||+|+.. |.
T Consensus 133 --d~~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~-~p~i~~~~~~~~GT~VtF~------PD 203 (1388)
T PTZ00108 133 --DTEKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSKKS-EPRITSYDGKKDYTKVTFY------PD 203 (1388)
T ss_pred --CCceeeecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcCCC-CCccCCCCCCCCceEEEEE------eC
Confidence 4344568899999988888888 5999999874446799999887 333 222 2223 689999975 66
Q ss_pred hhhcccCCchhHHH---HHHHHHHHHhcCCCeEEEEEE
Q 005789 176 RRKTLQNSSDDYTK---IVDLLSRMAIHHTNVSFSCRK 210 (677)
Q Consensus 176 Rrk~l~~~~~e~~~---i~~~v~~yAl~~p~v~F~l~~ 210 (677)
-..| ....-.... |.+.+..+|-.+|++.+.|..
T Consensus 204 ~~iF-~~~~fd~d~~~ll~~Rl~dlA~ln~GLkI~lnd 240 (1388)
T PTZ00108 204 YAKF-GMTEFDDDMLRLLKKRVYDLAGCFGKLKVYLNG 240 (1388)
T ss_pred HHHc-CCCccChHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 6655 322223333 778899999999999999864
No 39
>PLN03128 DNA topoisomerase 2; Provisional
Probab=98.87 E-value=2e-07 Score=113.58 Aligned_cols=257 Identities=14% Similarity=0.135 Sum_probs=156.2
Q ss_pred cccCHHHHHHHHHHhhhh-C---C-CCceEEEEee-CCeeEEEEEeCCCCCCcccH--------hhh-hhcccCCCcccc
Q 005789 38 VIQRPVSAVKELVENSLD-A---D-ATSINVVVKD-GGLKLIQVSDDGHGIRYEDL--------PIL-CERHTTSKLSKY 102 (677)
Q Consensus 38 vI~~p~~~vkELveNSiD-A---g-At~I~V~i~~-~g~~~i~V~DNG~GI~~~dl--------~~~-~~r~~TSK~~~~ 102 (677)
++..+..++.|+|.||+| | | ++.|.|.|+. +| +|+|.|||.|||.+-- +.+ +.-|+.||+.
T Consensus 49 ~vpGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~dg--sIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFd-- 124 (1135)
T PLN03128 49 YVPGLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQN--TISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFD-- 124 (1135)
T ss_pred cchhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCCC--eEEEEecCccccCCCCCCCCCccceEEEEeeccccccC--
Confidence 445678899999999999 2 2 6899999987 56 5999999999997532 233 3557888864
Q ss_pred cccccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCeeccc-c--cccc-CCCceEEEEEeeeccchhhh
Q 005789 103 EDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESE-P--KACA-AVKGTQIMVENLFYNMIARR 177 (677)
Q Consensus 103 ~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~~~~~-~--~~~~-~~~GTtV~v~dLF~n~PvRr 177 (677)
|-..-.|-|.+|.+.+...++| +++|+++......-|+..|.+|..... + ..+. ..+||+|+.. |.-.
T Consensus 125 -d~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~G~~~~~~p~i~~~~~~~~GT~ItF~------PD~~ 197 (1135)
T PLN03128 125 -DNEKKTTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTNNMSVKSEPKITSCKASENWTKITFK------PDLA 197 (1135)
T ss_pred -CccceeeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCCCcccCCCceeccCCCCCCceEEEEE------ECHH
Confidence 3334468899999988888888 599999854444579999999864421 1 1222 3589999975 6655
Q ss_pred hc-ccCCch-hHHHHHHHHHHHH-hcCCCeEEEEEECCeeeEEEEeCCCCCHHHHHHHHhChhhhccceEecccccCCCC
Q 005789 178 KT-LQNSSD-DYTKIVDLLSRMA-IHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSS 254 (677)
Q Consensus 178 k~-l~~~~~-e~~~i~~~v~~yA-l~~p~v~F~l~~~g~~~~~l~t~~~~s~~~~i~~i~G~~~~~~L~~i~~~~~~~~~ 254 (677)
.| ...... .+..+...++..| ..+|++++.|.... . ....+.+-+....+..-.....++-++. ..
T Consensus 198 iF~~~~fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnder---~-----~~~G~~dyv~~~~~~~~~~~~~~i~~~~--~~- 266 (1135)
T PLN03128 198 KFNMTRLDEDVVALMSKRVYDIAGCLGKKLKVELNGKK---L-----PVKSFQDYVGLYLGPNSREDPLPRIYEK--VN- 266 (1135)
T ss_pred HcCCCccChHHHHHHHHHHHHHHHhCCCCcEEEEecCC---C-----CCCCHHHHHHHHhcCCCCCCCCCeEEEe--cC-
Confidence 54 111222 2345666677777 77899999997432 1 1234555444332221000001122221 11
Q ss_pred CcceEEEEEEeCCCCCCCCceEEEEEcCeecCC-----hhHHHHHHHHHhhcCC---C----------CCCceEEEEEEc
Q 005789 255 SFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC-----APLKRAVEIVYAATFP---K----------ASKPFIYMSIVL 316 (677)
Q Consensus 255 ~~~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~-----~~l~kaI~~~y~~~lp---~----------~~~P~~~L~i~i 316 (677)
..|.+---++.. ...|+-|||+-+-.. ..+.++|.+....++. + ...=++++++.+
T Consensus 267 -~~~eva~~~s~~-----~~~~~SFVN~I~T~~GGTHv~g~~~~i~~~i~~~~~kk~K~~~~l~~~diregL~~vIs~ki 340 (1135)
T PLN03128 267 -DRWEVCVSLSDG-----SFQQVSFVNSIATIKGGTHVDYVADQIVKHIQEKVKKKNKNATHVKPFQIKNHLWVFVNCLI 340 (1135)
T ss_pred -ceEEEEEEEcCC-----CceEEEEECcEecCCCCchHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHhCcEEEEEEec
Confidence 234443333321 245899999987542 2466666655544431 1 113467888887
Q ss_pred CCCccc
Q 005789 317 PPEHVD 322 (677)
Q Consensus 317 ~p~~vD 322 (677)
+--..|
T Consensus 341 ~nP~Fe 346 (1135)
T PLN03128 341 ENPTFD 346 (1135)
T ss_pred CCCccc
Confidence 744444
No 40
>PLN03237 DNA topoisomerase 2; Provisional
Probab=98.81 E-value=3.2e-07 Score=112.54 Aligned_cols=177 Identities=15% Similarity=0.181 Sum_probs=122.0
Q ss_pred cccCChHHHHHHhcCCcccC--------------------------HHHHHHHHHHhhhh-C----CCCceEEEEe-eCC
Q 005789 22 IHRLEESVVNRIAAGEVIQR--------------------------PVSAVKELVENSLD-A----DATSINVVVK-DGG 69 (677)
Q Consensus 22 I~~L~~~v~~kIaAgevI~~--------------------------p~~~vkELveNSiD-A----gAt~I~V~i~-~~g 69 (677)
-++|.+--.-+.+.|.+|.+ +..++.|+|.||+| + .++.|.|.|+ .+|
T Consensus 32 Yqkls~lEhVr~RP~mYIGSt~~~~~~~wv~~~~~m~~~~v~~vpGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~g 111 (1465)
T PLN03237 32 YQKKSQLEHILLRPDTYIGSIEKHTQTLWVYETDKMVQRSVTYVPGLYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQN 111 (1465)
T ss_pred hhccccchHHhcCCCCEeCCCCcccceeeeeccccceeeeccccchhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCCC
Confidence 55666666666777776654 45899999999999 2 2689999998 456
Q ss_pred eeEEEEEeCCCCCCcccH--------hhh-hhcccCCCcccccccccccccCccchhhhhhhcce-EEEEEEEeCCCcce
Q 005789 70 LKLIQVSDDGHGIRYEDL--------PIL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHG 139 (677)
Q Consensus 70 ~~~i~V~DNG~GI~~~dl--------~~~-~~r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~ 139 (677)
.|+|.|||.||+.+-- +++ +.-|+.||+. |-..-.|-|.+|.+......+| .++|+++......-
T Consensus 112 --sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFd---d~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~ 186 (1465)
T PLN03237 112 --LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYD---DNEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKK 186 (1465)
T ss_pred --EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCC---CCcceeeccccccCccccccccCeeEEEEEECCCCeE
Confidence 5999999999997632 233 3557888874 3334568899999988888888 59999984323356
Q ss_pred EEEEEeC--Ceeccccc--cc-cCCCceEEEEEeeeccchhhhhcccCCchhHHHH---HHHHHHHH-hcCCCeEEEEEE
Q 005789 140 YRVSYRD--GVMESEPK--AC-AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKI---VDLLSRMA-IHHTNVSFSCRK 210 (677)
Q Consensus 140 ~~~~~~~--g~~~~~~~--~~-~~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i---~~~v~~yA-l~~p~v~F~l~~ 210 (677)
|+..|.+ |+... +. .+ ...+||+|+.. |.-..| ....-++..+ ...++..| -.+++|.+.|..
T Consensus 187 y~Q~f~~nmG~~~~-p~i~~~~~~~~GT~VtF~------PD~eiF-~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~Lnd 258 (1465)
T PLN03237 187 YKQVFSNNMGKKSE-PVITKCKKSENWTKVTFK------PDLAKF-NMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNG 258 (1465)
T ss_pred EEEEEeCCCCccCC-ceeccCCCCCCceEEEEE------ECHHHh-CCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 8899986 76542 21 22 13699999974 666655 3222233333 34455556 778999999975
Q ss_pred C
Q 005789 211 H 211 (677)
Q Consensus 211 ~ 211 (677)
.
T Consensus 259 e 259 (1465)
T PLN03237 259 K 259 (1465)
T ss_pred c
Confidence 4
No 41
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.51 E-value=2.2e-07 Score=83.60 Aligned_cols=79 Identities=27% Similarity=0.359 Sum_probs=61.2
Q ss_pred cCHHHHHHHHHHhhhhCCCC--ceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCCcccccccccccccCccch
Q 005789 40 QRPVSAVKELVENSLDADAT--SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGE 116 (677)
Q Consensus 40 ~~p~~~vkELveNSiDAgAt--~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~i~t~GfRGe 116 (677)
..+..++.||++||+|+... .|.|.+.. ++.-.|+|.|||.||++++++.++.++.+++.. . ...+-+|.
T Consensus 4 ~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~----~---~~~~g~Gl 76 (111)
T PF02518_consen 4 DRLRQILSELLDNAIKHSPEGGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDKS----E---TSISGHGL 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSS----S---GGSSSSSH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecCeEEEEEEeccccccccccccchhhccccccc----c---cccCCCCh
Confidence 35678999999999998766 89998874 466689999999999999999999999888751 1 22223566
Q ss_pred hhhhhhcce
Q 005789 117 ALASMTYVG 125 (677)
Q Consensus 117 ALaSIs~vs 125 (677)
+|+....++
T Consensus 77 GL~~~~~~~ 85 (111)
T PF02518_consen 77 GLYIVKQIA 85 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776655554
No 42
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.5e-05 Score=89.39 Aligned_cols=294 Identities=16% Similarity=0.180 Sum_probs=163.5
Q ss_pred ccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCC--------------CCceEEEEe-eCCeeEEEEEeCCCCCCcc
Q 005789 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAD--------------ATSINVVVK-DGGLKLIQVSDDGHGIRYE 85 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAg--------------At~I~V~i~-~~g~~~i~V~DNG~GI~~~ 85 (677)
.|++|.+-+++..-|+ -.--++|||.||=||- .....|.+. +.....++|.|.|.||+++
T Consensus 42 E~~qLm~lii~s~YS~-----kEvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMTk~ 116 (656)
T KOG0019|consen 42 ETNQLMDIVAKSLYSH-----KEVFLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMTKE 116 (656)
T ss_pred hHHhHHHHHHHHhhcc-----hHHHHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcCHH
Confidence 4899999999998888 3445889999999983 223344442 1222368999999999999
Q ss_pred cHhhhhhcccCCCcccc-cc----cccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCe-eccccccccC
Q 005789 86 DLPILCERHTTSKLSKY-ED----LQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGV-MESEPKACAA 158 (677)
Q Consensus 86 dl~~~~~r~~TSK~~~~-~d----l~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~-~~~~~~~~~~ 158 (677)
||..-...-+-|=-..| +. -..++-.|..|.+..|---|+ +|+|+||+.++. +|.+...+|. ......+ ..
T Consensus 117 dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e-~y~Wes~~~gs~~v~~~~-~~ 194 (656)
T KOG0019|consen 117 DLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADE-GLQWTSNGRGSYEIAEAS-GL 194 (656)
T ss_pred HHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCc-ceeeecCCCCceEEeecc-Cc
Confidence 98654322222210111 11 224567888899999988898 699999998875 8888876443 3211222 37
Q ss_pred CCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhc--CCCeEEEEEECCeeeEEEEeCCCCCHHHH----HHH
Q 005789 159 VKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIH--HTNVSFSCRKHGAARADVHSIATSSRLDS----IRT 232 (677)
Q Consensus 159 ~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~--~p~v~F~l~~~g~~~~~l~t~~~~s~~~~----i~~ 232 (677)
.+||.|+.. +|.-...-.+-.+|.++|.+|+.. +|- .+...+-+..+.+|.-.+..-..+. .++
T Consensus 195 ~rGTki~l~---------lKe~~~ey~ee~rikeiVKK~S~Fv~yPI-~l~~ek~N~tKpiW~rnp~dit~eey~eFYks 264 (656)
T KOG0019|consen 195 RTGTKIVIH---------LKEGDCEFLEEKRIKEVVKKYSNFVSYPI-YLNGERVNNLKAIWTMNPKEVNEEEHEEFYKS 264 (656)
T ss_pred cccceEEee---------ehhhhhhhccHhHHHHHHhhccccccccc-hhhhhhhhccCcccccCchhhhHHHHHHHHHh
Confidence 899999985 222111233568999999999764 332 2222333444566644333322222 333
Q ss_pred HhChhhhccceEecccccCCCCCcceEEEEEEeCCCC------CCCCceEEEEEcCeecCChhHHHHHHHHHhhcCCCCC
Q 005789 233 VYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNY------VAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKAS 306 (677)
Q Consensus 233 i~G~~~~~~L~~i~~~~~~~~~~~~~~v~G~is~~~~------~~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~~ 306 (677)
+.+. -...+--.+++. .....|+.-+|+..... ..+++..-+|+-.-+|... + ....-.++.
T Consensus 265 l~nd-w~d~lav~hf~~---eg~lefrail~vP~rap~~lF~~~kk~n~i~Ly~rrv~I~d~----~-~~lipe~l~--- 332 (656)
T KOG0019|consen 265 VSGD-WDDPLYVLHFKT---DGPLSIRSIFYIPKRAPNSMFDMRKKKNGIKLYARRVLITDD----A-GDLIPEWLR--- 332 (656)
T ss_pred hccc-ccchhhHhhhcc---ccceEEEEEEeccccCcchhhhhhhccCceEEEEEEEecCch----h-HHHHHHHhc---
Confidence 3321 011111111111 11145677777764321 1234455666655555543 1 112222221
Q ss_pred CceEEEEEEcCCCccccccCCCCCeEecCChhHHHHHHHHHHHHHH
Q 005789 307 KPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 352 (677)
Q Consensus 307 ~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~l~~~L 352 (677)
++.-.++.+.+-.|+.- ..+.+..|+..|++.+.+.+
T Consensus 333 ----fv~gvVdSeDlPLNiSr-----emlQ~~~i~k~~rk~l~~k~ 369 (656)
T KOG0019|consen 333 ----FVRGVVDSEDIPLNLSR-----EMLQENAVLRKLRKVLPQKI 369 (656)
T ss_pred ----hheeccccccCccchhH-----HHHhhhhHHHHHHHHHHHHH
Confidence 12233444445555532 45677777777666655443
No 43
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.7e-05 Score=83.94 Aligned_cols=144 Identities=22% Similarity=0.304 Sum_probs=93.5
Q ss_pred HHHHHHHHhhhhCC----------------CCceEEEEeeC-CeeEEEEEeCCCCCCcccHhhh-h--hcccCC----Cc
Q 005789 44 SAVKELVENSLDAD----------------ATSINVVVKDG-GLKLIQVSDDGHGIRYEDLPIL-C--ERHTTS----KL 99 (677)
Q Consensus 44 ~~vkELveNSiDAg----------------At~I~V~i~~~-g~~~i~V~DNG~GI~~~dl~~~-~--~r~~TS----K~ 99 (677)
-.++|||.||-||= -...+|.|+.+ ....+.|+|.|.||+.+||-.- + -+..|| |.
T Consensus 98 IFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl~Km 177 (785)
T KOG0020|consen 98 IFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDLIKNLGTIAKSGTSEFLEKM 177 (785)
T ss_pred HHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCccHHHHHHhhhhhhcccHHHHHHHh
Confidence 46899999999983 22455555422 2347899999999999998542 2 233343 55
Q ss_pred cccccccc--ccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCee--ccccccccCCCceEEEEEeeeccch
Q 005789 100 SKYEDLQS--IKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM--ESEPKACAAVKGTQIMVENLFYNMI 174 (677)
Q Consensus 100 ~~~~dl~~--i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~~--~~~~~~~~~~~GTtV~v~dLF~n~P 174 (677)
.+..+... -.-.|-.|.+.+|.--|+ +|.|+||+.++. .|-+..+.... ..+|....-.+||+|+..
T Consensus 178 ~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~-QyiWESdan~FsvseDprg~tL~RGt~ItL~------- 249 (785)
T KOG0020|consen 178 QDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDS-QYIWESDANSFSVSEDPRGNTLGRGTEITLY------- 249 (785)
T ss_pred hccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCcc-ceeeeccCcceeeecCCCCCcccCccEEEEE-------
Confidence 44444322 134566678888888888 699999998753 34444333333 224555566899999985
Q ss_pred hhhhcccCCc---hhHHHHHHHHHHHHhc
Q 005789 175 ARRKTLQNSS---DDYTKIVDLLSRMAIH 200 (677)
Q Consensus 175 vRrk~l~~~~---~e~~~i~~~v~~yAl~ 200 (677)
|+..+ -|-..+.++|.+|+-.
T Consensus 250 -----LkeEA~dyLE~dtlkeLvkkYSqF 273 (785)
T KOG0020|consen 250 -----LKEEAGDYLEEDTLKELVKKYSQF 273 (785)
T ss_pred -----ehhhhhhhcchhHHHHHHHHHHHh
Confidence 33222 2557899999999853
No 44
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=97.81 E-value=2.2e-05 Score=88.44 Aligned_cols=59 Identities=36% Similarity=0.518 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHhhhhCCC----CceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcccCCCc
Q 005789 41 RPVSAVKELVENSLDADA----TSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgA----t~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (677)
++.+++-.||.||+||=+ ..|.|... .++.-.|+|.|||+||.++-++.+|++|.|+|-
T Consensus 497 RLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~ 560 (603)
T COG4191 497 RLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKP 560 (603)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCCccccCc
Confidence 789999999999999854 37888875 566668999999999999999999999999994
No 45
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.79 E-value=3.6e-05 Score=86.16 Aligned_cols=79 Identities=27% Similarity=0.334 Sum_probs=63.8
Q ss_pred cCCcccCHHHHHHHHHHhhhhCCC-----CceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCCcccccccccc
Q 005789 35 AGEVIQRPVSAVKELVENSLDADA-----TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSI 108 (677)
Q Consensus 35 AgevI~~p~~~vkELveNSiDAgA-----t~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~i 108 (677)
.+...+...+++-.|++||+||-+ ..|.+.+.+ ++.-.|+|.||||||+++..+.+|+++.++|-.
T Consensus 421 ~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~-------- 492 (537)
T COG3290 421 SELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKNT-------- 492 (537)
T ss_pred CccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhcCccccCC--------
Confidence 344556788999999999999977 689999964 555579999999999999999999999999841
Q ss_pred cccCccchhhhhhhcc
Q 005789 109 KSMGFRGEALASMTYV 124 (677)
Q Consensus 109 ~t~GfRGeALaSIs~v 124 (677)
|-||-+|+-+.+.
T Consensus 493 ---~~rGiGL~Lvkq~ 505 (537)
T COG3290 493 ---GGRGIGLYLVKQL 505 (537)
T ss_pred ---CCCchhHHHHHHH
Confidence 3567788766443
No 46
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=97.75 E-value=7.8e-05 Score=83.02 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhhhCCCC------ceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcccCCCcccccccccccccCcc
Q 005789 42 PVSAVKELVENSLDADAT------SINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFR 114 (677)
Q Consensus 42 p~~~vkELveNSiDAgAt------~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~i~t~GfR 114 (677)
..+++.+|+.||+++.+. .|.|.+. .++.-.|+|.|||.||++++...+|++|.|+|-.. .+-.
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~---------~~G~ 458 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS---------RKHI 458 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC---------CCCC
Confidence 678999999999998543 3666664 35555899999999999999999999999998542 2224
Q ss_pred chhhhhhhcc
Q 005789 115 GEALASMTYV 124 (677)
Q Consensus 115 GeALaSIs~v 124 (677)
|.+|+-...+
T Consensus 459 GlGL~i~~~i 468 (494)
T TIGR02938 459 GMGLSVAQEI 468 (494)
T ss_pred cccHHHHHHH
Confidence 6666654433
No 47
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=97.67 E-value=0.00014 Score=83.38 Aligned_cols=74 Identities=20% Similarity=0.313 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhhhC------CCCceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCCcccccccccccccCcc
Q 005789 42 PVSAVKELVENSLDA------DATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFR 114 (677)
Q Consensus 42 p~~~vkELveNSiDA------gAt~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~i~t~GfR 114 (677)
..+++.+|++||++| +.+.|.|.+.. ++.-.|.|.|||.||++++.+.+|+++.|+|-.. .|-+
T Consensus 433 l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~---------~~g~ 503 (545)
T PRK15053 433 FAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADE---------PGEH 503 (545)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCC---------CCCc
Confidence 567899999999998 35678888764 4445699999999999999999999999987431 3345
Q ss_pred chhhhhhhcc
Q 005789 115 GEALASMTYV 124 (677)
Q Consensus 115 GeALaSIs~v 124 (677)
|.+|+-+..+
T Consensus 504 GlGL~ivk~i 513 (545)
T PRK15053 504 GIGLYLIASY 513 (545)
T ss_pred eeCHHHHHHH
Confidence 7778766555
No 48
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.65 E-value=0.0001 Score=82.04 Aligned_cols=58 Identities=31% Similarity=0.351 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHhhhhCCC--CceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 41 RPVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgA--t~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
...+++.+|+.||+++.. ..|.|.+.. ++.-.|+|.|||.||++++++.+|++|.+.+
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~ 377 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVD 377 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCccccc
Confidence 367899999999999864 357776643 3344699999999999999999999998765
No 49
>PRK10364 sensor protein ZraS; Provisional
Probab=97.56 E-value=0.0003 Score=79.01 Aligned_cols=58 Identities=28% Similarity=0.330 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHhhhhCC--CCceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 41 RPVSAVKELVENSLDAD--ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 41 ~p~~~vkELveNSiDAg--At~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
...+++..|++||++|. ...|.|.+.. ++.-.|.|.|||.||++++++.+|+++.++|
T Consensus 348 ~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k 408 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTTK 408 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCccccCC
Confidence 36688999999999984 4578887753 3334699999999999999999999999887
No 50
>PRK10604 sensor protein RstB; Provisional
Probab=97.52 E-value=0.00039 Score=77.72 Aligned_cols=77 Identities=23% Similarity=0.268 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhhhCCCCceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCCcccccccccccccCccchhhhh
Q 005789 42 PVSAVKELVENSLDADATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALAS 120 (677)
Q Consensus 42 p~~~vkELveNSiDAgAt~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~i~t~GfRGeALaS 120 (677)
+..++.+||+||+.++...|.|.+.. ++.-.|.|.|||.||++++++.+|++|.+..... .-.+-|+ |.+|+-
T Consensus 320 l~~vl~NLl~NAik~~~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~-----~~~~~g~-GLGL~i 393 (433)
T PRK10604 320 MERVLDNLLNNALRYAHSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLDPSR-----DRATGGC-GLGLAI 393 (433)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCC-----CCCCCCc-cchHHH
Confidence 56789999999999998999888863 3444699999999999999999999998753221 1122344 677764
Q ss_pred hhcc
Q 005789 121 MTYV 124 (677)
Q Consensus 121 Is~v 124 (677)
...+
T Consensus 394 vk~i 397 (433)
T PRK10604 394 VHSI 397 (433)
T ss_pred HHHH
Confidence 4444
No 51
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.50 E-value=0.00034 Score=59.59 Aligned_cols=52 Identities=29% Similarity=0.413 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhhhCCC---CceEEEEeeC-CeeEEEEEeCCCCCCcccHhhhhhcc
Q 005789 43 VSAVKELVENSLDADA---TSINVVVKDG-GLKLIQVSDDGHGIRYEDLPILCERH 94 (677)
Q Consensus 43 ~~~vkELveNSiDAgA---t~I~V~i~~~-g~~~i~V~DNG~GI~~~dl~~~~~r~ 94 (677)
..++.||++||+++++ ..|.|.+... +.-.|.|.|+|.||++..++..+.++
T Consensus 2 ~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~ 57 (103)
T cd00075 2 QQVLLNLLSNAIKHTPEGGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERF 57 (103)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhh
Confidence 5789999999999987 6677777643 34468999999999999998888765
No 52
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=97.48 E-value=0.00044 Score=76.71 Aligned_cols=77 Identities=25% Similarity=0.307 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhhhCCC--CceEEEEeeC-CeeEEEEEeCCCCCCcccHhhhhhcccCCCcccccccccccccCccchhh
Q 005789 42 PVSAVKELVENSLDADA--TSINVVVKDG-GLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (677)
Q Consensus 42 p~~~vkELveNSiDAgA--t~I~V~i~~~-g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~i~t~GfRGeAL 118 (677)
+..++.+|+.||++++. ..|.|.+... +.-.|+|.|||.||+++++..+|++|.+++..... .+-| +|.+|
T Consensus 354 l~~~~~nll~Nai~~~~~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~-----~~~g-~GlGL 427 (457)
T TIGR01386 354 FRRAISNLLSNALRHTPDGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSN-----SGEG-TGLGL 427 (457)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCC-----CCCC-ccccH
Confidence 56789999999999873 4788888643 33469999999999999999999999988754311 1222 46677
Q ss_pred hhhhcc
Q 005789 119 ASMTYV 124 (677)
Q Consensus 119 aSIs~v 124 (677)
+-+..+
T Consensus 428 ~i~~~~ 433 (457)
T TIGR01386 428 AIVRSI 433 (457)
T ss_pred HHHHHH
Confidence 655444
No 53
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=97.47 E-value=0.00044 Score=78.67 Aligned_cols=58 Identities=28% Similarity=0.470 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHhhhhCC----CCceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 41 RPVSAVKELVENSLDAD----ATSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 41 ~p~~~vkELveNSiDAg----At~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
.+..++.+|++||++|. ...|.|.+. .++.-.|+|.|||.||++++++.+|+++.|+|
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~ 495 (542)
T PRK11086 433 ELITILGNLIENALEAVGGEEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTK 495 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhCCCccC
Confidence 46789999999999984 346888775 34445799999999999999999999998877
No 54
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.41 E-value=0.00029 Score=83.43 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhhhCCC--CceEEEEee-CCeeEEEEEeCCCCCCccc-HhhhhhcccCCC
Q 005789 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYED-LPILCERHTTSK 98 (677)
Q Consensus 42 p~~~vkELveNSiDAgA--t~I~V~i~~-~g~~~i~V~DNG~GI~~~d-l~~~~~r~~TSK 98 (677)
..+++.+|+.||+++.. ..|.|.+.. ++.-.|+|.|||.||+++. .+.+|++|.|+|
T Consensus 580 l~~vl~nLl~NAik~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~ 640 (679)
T TIGR02916 580 LERVLGHLVQNALEATPGEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTTK 640 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCC
Confidence 56789999999999864 468888863 4455799999999999999 899999998887
No 55
>PRK10815 sensor protein PhoQ; Provisional
Probab=97.40 E-value=0.00035 Score=79.55 Aligned_cols=57 Identities=16% Similarity=0.245 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhhhCCCCceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 42 PVSAVKELVENSLDADATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 42 p~~~vkELveNSiDAgAt~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
...++..||+||++++...|.|.+.. ++.-.|.|.|||.||++++++.+|+++.+.+
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~ 436 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDRGQRAD 436 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCC
Confidence 46799999999999998888888863 4444799999999999999999999987543
No 56
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.32 E-value=0.00033 Score=72.54 Aligned_cols=60 Identities=25% Similarity=0.330 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHhhhhCC-CCceEEEEeeCC-eeEEEEEeCCCCCCcccHhhhhhcccCCCcc
Q 005789 41 RPVSAVKELVENSLDAD-ATSINVVVKDGG-LKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (677)
Q Consensus 41 ~p~~~vkELveNSiDAg-At~I~V~i~~~g-~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~ 100 (677)
....++..|+.||++|. ...|.|.+...+ .-.++|.|||.||++++++.+|+++.|+|-.
T Consensus 228 ~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~ 289 (336)
T COG0642 228 RLRQVLVNLLSNAIKYTPGGEITISVRQDDEQVTISVEDTGPGIPEEELERIFEPFFRTDKS 289 (336)
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCC
Confidence 36779999999999999 599999997654 3579999999999999999999999999854
No 57
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=97.30 E-value=0.001 Score=74.38 Aligned_cols=77 Identities=23% Similarity=0.290 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhhhCCCC--ceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCCcccccccccccccCccchhh
Q 005789 42 PVSAVKELVENSLDADAT--SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (677)
Q Consensus 42 p~~~vkELveNSiDAgAt--~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~i~t~GfRGeAL 118 (677)
..+++.+||.||+.++.. .|.|.+.. ++.-.|.|.|||.||++++++.+|+++.+++-... ...|-.|.+|
T Consensus 353 l~qvl~nll~NAi~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~------~~~~g~GlGL 426 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRN------RASGGSGLGL 426 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcC------CCCCCCcHHH
Confidence 567899999999997643 57777753 33446899999999999999999999987763311 1123347777
Q ss_pred hhhhcc
Q 005789 119 ASMTYV 124 (677)
Q Consensus 119 aSIs~v 124 (677)
+-...+
T Consensus 427 ~iv~~i 432 (466)
T PRK10549 427 AICLNI 432 (466)
T ss_pred HHHHHH
Confidence 654444
No 58
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.29 E-value=0.001 Score=71.90 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhhhCC--CCceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcccCC
Q 005789 42 PVSAVKELVENSLDAD--ATSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (677)
Q Consensus 42 p~~~vkELveNSiDAg--At~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (677)
+..++.+||+||+.++ .+.|.|.+. .++.-.|.|.|||.||++++++.++.+|.+.
T Consensus 248 l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~ 306 (356)
T PRK10755 248 LRLLLRNLVENAHRYSPEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRM 306 (356)
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeC
Confidence 3578999999999986 457888875 3444579999999999999999999988743
No 59
>PRK09303 adaptive-response sensory kinase; Validated
Probab=97.29 E-value=0.00095 Score=73.50 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhhCCC--CceEEEEe--eCCeeEEEEEeCCCCCCcccHhhhhhcccCCCc
Q 005789 42 PVSAVKELVENSLDADA--TSINVVVK--DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (677)
Q Consensus 42 p~~~vkELveNSiDAgA--t~I~V~i~--~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (677)
...++..||.||+.+.. ..|.|.+. .++.-.|.|.|||.||++++++.+|.+|.+.|-
T Consensus 273 l~qvl~NLl~NAik~~~~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~ 334 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPEGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR 334 (380)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC
Confidence 56899999999999875 46666653 344446899999999999999999999987763
No 60
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=97.27 E-value=0.0018 Score=78.69 Aligned_cols=91 Identities=25% Similarity=0.336 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHhhhhCC--CCceEEEEee----------------CCeeEEEEEeCCCCCCcccHhhhhhcccCCCcccc
Q 005789 41 RPVSAVKELVENSLDAD--ATSINVVVKD----------------GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKY 102 (677)
Q Consensus 41 ~p~~~vkELveNSiDAg--At~I~V~i~~----------------~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~ 102 (677)
...+++.+|+.||+++. ...|.|.+.. ++.-.|.|.|||.||++++++.+|++|.|+|-
T Consensus 560 ~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~--- 636 (828)
T PRK13837 560 ELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA--- 636 (828)
T ss_pred HHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC---
Confidence 36789999999999974 3567777753 34446999999999999999999999998763
Q ss_pred cccccccccCccchhhhhhh-----cceEEEEEEEeCCCcceEEEEE
Q 005789 103 EDLQSIKSMGFRGEALASMT-----YVGHVTVTTITKGHLHGYRVSY 144 (677)
Q Consensus 103 ~dl~~i~t~GfRGeALaSIs-----~vs~v~I~Tr~~~~~~~~~~~~ 144 (677)
|-.|.+|+-.. +-+++++.|... .-..+.+.+
T Consensus 637 ---------~G~GLGL~i~~~iv~~~gG~i~v~s~~g-~Gt~f~i~L 673 (828)
T PRK13837 637 ---------GGTGLGLATVHGIVSAHAGYIDVQSTVG-RGTRFDVYL 673 (828)
T ss_pred ---------CCCcchHHHHHHHHHHCCCEEEEEecCC-CeEEEEEEE
Confidence 22244554332 225788887643 223345444
No 61
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=97.27 E-value=0.0012 Score=73.58 Aligned_cols=76 Identities=26% Similarity=0.323 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhhhCCC--CceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcccCCCcccccccccccccCccchhh
Q 005789 42 PVSAVKELVENSLDADA--TSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (677)
Q Consensus 42 p~~~vkELveNSiDAgA--t~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~i~t~GfRGeAL 118 (677)
+..++.+||+||+.++. +.|.|++. .++.-.|.|.|||.||+++++..++.++.+.+... ...+-+|.+|
T Consensus 369 l~~vl~nli~Na~~~~~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~-------~~~~~~GlGL 441 (475)
T PRK11100 369 LRQALGNLLDNAIDFSPEGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSLPRPA-------NGRKSTGLGL 441 (475)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCCC-------CCCCCcchhH
Confidence 66889999999999764 57888886 34444699999999999999999999998775321 1122346677
Q ss_pred hhhhcc
Q 005789 119 ASMTYV 124 (677)
Q Consensus 119 aSIs~v 124 (677)
+.+..+
T Consensus 442 ~i~~~~ 447 (475)
T PRK11100 442 AFVREV 447 (475)
T ss_pred HHHHHH
Confidence 654443
No 62
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=97.26 E-value=0.00053 Score=83.61 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHhhhhCC-CCceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 41 RPVSAVKELVENSLDAD-ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 41 ~p~~~vkELveNSiDAg-At~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
++..++..||+||+++. ...|.|.+.. ++.-.|+|.|||.||++++++.+|++|.+.+
T Consensus 513 ~l~~il~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~ 572 (921)
T PRK15347 513 RLRQILVNLLGNAVKFTETGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFYQAD 572 (921)
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcccCC
Confidence 36789999999999975 4468888763 4444699999999999999999999998876
No 63
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.22 E-value=0.0015 Score=72.76 Aligned_cols=57 Identities=28% Similarity=0.326 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhhhCCCCceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 42 PVSAVKELVENSLDADATSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 42 p~~~vkELveNSiDAgAt~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
...++.+||+||+.++.+.|.|.+. .++.-.|+|.|||.||++++++.++.++.+.+
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~ 411 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVD 411 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccCC
Confidence 4568999999999999999988886 34444699999999999999999999987643
No 64
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.16 E-value=0.0015 Score=56.47 Aligned_cols=58 Identities=28% Similarity=0.398 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHhhhhCCCC--ceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 41 RPVSAVKELVENSLDADAT--SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgAt--~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
....++.|++.|++++.++ .|.|.+.. ++...|.|.|||.||+.+++..++.++..++
T Consensus 5 ~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~ 65 (111)
T smart00387 5 RLRQVLSNLLDNAIKYTPEGGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTD 65 (111)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECC
Confidence 3567899999999999886 78887764 3555799999999999999999888766554
No 65
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=97.14 E-value=0.0017 Score=71.99 Aligned_cols=56 Identities=32% Similarity=0.303 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhhhCCCCceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCC
Q 005789 42 PVSAVKELVENSLDADATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (677)
Q Consensus 42 p~~~vkELveNSiDAgAt~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (677)
...++.+||+||+..+...|.|.+.. ++.-.|+|.|||.||++++++.++++|...
T Consensus 332 l~~il~NLl~NA~k~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~ 388 (435)
T PRK09467 332 IKRALANLVVNAARYGNGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTRG 388 (435)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCcccC
Confidence 35689999999999999999998864 444469999999999999999999998753
No 66
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=97.10 E-value=0.0015 Score=70.21 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhhCC---CCceEEEEeeC-------C----eeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 42 PVSAVKELVENSLDAD---ATSINVVVKDG-------G----LKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 42 p~~~vkELveNSiDAg---At~I~V~i~~~-------g----~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
..+++..|+.||++|. ...|.|.+... + ...|.|.|||.||++++.+.+|.++.|+|
T Consensus 238 l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~ 308 (348)
T PRK11073 238 IEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGR 308 (348)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCC
Confidence 6889999999999974 34566654321 1 23589999999999999999999998877
No 67
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=96.92 E-value=0.0034 Score=58.61 Aligned_cols=57 Identities=28% Similarity=0.238 Sum_probs=42.9
Q ss_pred cCHHHHHHHHHHhhhhCC-----CCceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 40 QRPVSAVKELVENSLDAD-----ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 40 ~~p~~~vkELveNSiDAg-----At~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
..+..++.||+.||+..+ ...|.|.+.. ++.-.++|.|||.||+ +.+.++.++.+++
T Consensus 38 ~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~--~~~~~~~~~~~~~ 100 (137)
T TIGR01925 38 TDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHEVYITVRDEGIGIE--NLEEAREPLYTSK 100 (137)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCEEEEEEEEcCCCcC--chhHhhCCCcccC
Confidence 456788999999999864 3468888763 3444789999999997 4667777776654
No 68
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=96.89 E-value=0.0031 Score=75.76 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHhhhhCCC-CceEEEEee--CCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 41 RPVSAVKELVENSLDADA-TSINVVVKD--GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgA-t~I~V~i~~--~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
+..+++.+||.||+++.. ..|.|.+.. ++.-.|.|.|||.||++++++.+|++|.|.|
T Consensus 398 ~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~ 458 (779)
T PRK11091 398 RLRQILWNLISNAVKFTQQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQVK 458 (779)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhccc
Confidence 467899999999999863 457777653 4445789999999999999999999999886
No 69
>PRK10337 sensor protein QseC; Provisional
Probab=96.88 E-value=0.0036 Score=69.74 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhhCCCC--ceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 42 PVSAVKELVENSLDADAT--SINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 42 p~~~vkELveNSiDAgAt--~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
+..++.+||+||++++.. .|.|.+... .|+|.|||.||++++++.+|.||.+.+
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~~~---~i~i~D~G~Gi~~~~~~~if~~f~~~~ 408 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLNAR---NFTVRDNGPGVTPEALARIGERFYRPP 408 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEee---EEEEEECCCCCCHHHHHHhcccccCCC
Confidence 456899999999998765 455555432 589999999999999999999998754
No 70
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=96.69 E-value=0.0059 Score=72.80 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhhhCCC--CceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCCc
Q 005789 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (677)
Q Consensus 42 p~~~vkELveNSiDAgA--t~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (677)
...++..||+||+++.. ..|.|.+.. ++.-.|+|.|||.||++++++.+|++|.++|-
T Consensus 598 L~~il~NLI~NAik~s~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~ 658 (703)
T TIGR03785 598 IAQMLDKLVDNAREFSPEDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRD 658 (703)
T ss_pred HHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCC
Confidence 56889999999999753 457777753 44457999999999999999999999998763
No 71
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.67 E-value=0.007 Score=63.58 Aligned_cols=57 Identities=35% Similarity=0.419 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhhhCCC--CceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 42 p~~~vkELveNSiDAgA--t~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
...++.+|+.||++++. ..|.|.+.. ++.-.|.|.|||.||+++.++.+|.++.+.+
T Consensus 230 l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~ 289 (333)
T TIGR02966 230 LRSAFSNLVSNAIKYTPEGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRVD 289 (333)
T ss_pred HHHHHHHHHHHhheeCCCCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceecC
Confidence 56789999999999864 457776643 3334699999999999999999999987543
No 72
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.60 E-value=0.0049 Score=70.37 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhhhCCCC--ceEEEEe--eCCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 42 PVSAVKELVENSLDADAT--SINVVVK--DGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 42 p~~~vkELveNSiDAgAt--~I~V~i~--~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
...++.+|+.||+.+... .|.|.+. .++.-.|.|.|||+||+++.+..+|.++.++|
T Consensus 501 l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~ 561 (607)
T PRK11360 501 LKQVLLNILINAVQAISARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTK 561 (607)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCC
Confidence 678899999999998544 5666664 23314699999999999999999999998876
No 73
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=96.58 E-value=0.012 Score=71.96 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHhhhhCCC-CceEEEEee----CCeeEEEEEeCCCCCCcccHhhhhhcccCCCc
Q 005789 41 RPVSAVKELVENSLDADA-TSINVVVKD----GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgA-t~I~V~i~~----~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (677)
+..+++..||.||+++.. ..|.|.+.. ++.-.|+|.|||.||++++++.+|++|.|.|-
T Consensus 565 ~L~QVL~NLL~NAik~t~~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~ 628 (894)
T PRK10618 565 ALRKILLLLLNYAITTTAYGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQ 628 (894)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCC
Confidence 467899999999999754 357777752 23457999999999999999999999988764
No 74
>PRK13557 histidine kinase; Provisional
Probab=96.55 E-value=0.0075 Score=68.36 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhhCCCC--ceEEEEe----------------eCCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 42 PVSAVKELVENSLDADAT--SINVVVK----------------DGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 42 p~~~vkELveNSiDAgAt--~I~V~i~----------------~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
+.+++..|+.||+++... .|.|... .++.-.|.|.|||.||++++.+.+|.+|.|+|
T Consensus 278 l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~ 352 (540)
T PRK13557 278 AEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTK 352 (540)
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccC
Confidence 567899999999998543 4555443 22334699999999999999999999998876
No 75
>PRK10490 sensor protein KdpD; Provisional
Probab=96.55 E-value=0.0088 Score=73.23 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhhhCCC--CceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcccCCCc
Q 005789 42 PVSAVKELVENSLDADA--TSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (677)
Q Consensus 42 p~~~vkELveNSiDAgA--t~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (677)
..+++.+||+||+.+.. +.|.|.+. .++.-.|+|.|||.||++++++.+|.+|.+.+-
T Consensus 779 L~qVL~NLL~NAik~s~~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 839 (895)
T PRK10490 779 FERVLINLLENAVKYAGAQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKFARGNK 839 (895)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCCccCCC
Confidence 56899999999999864 35777775 344457999999999999999999999988653
No 76
>PRK09835 sensor kinase CusS; Provisional
Probab=96.53 E-value=0.013 Score=65.85 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHhhhhCCC--CceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 41 RPVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgA--t~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
.+..++.+||.||+.+.. ..|.|.+.. ++.-.|.|.|||.||++++++.+|++|.++.
T Consensus 375 ~l~~vl~nll~Na~~~~~~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~ 435 (482)
T PRK09835 375 MLRRAISNLLSNALRYTPAGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVD 435 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCC
Confidence 367889999999999863 357777753 3334699999999999999999999998764
No 77
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=96.39 E-value=0.013 Score=62.83 Aligned_cols=46 Identities=22% Similarity=0.349 Sum_probs=39.4
Q ss_pred cCHHHHHHHHHHhhhh-CCCCceEEEEeeCCe-eEEEEEeCCCCCCcc
Q 005789 40 QRPVSAVKELVENSLD-ADATSINVVVKDGGL-KLIQVSDDGHGIRYE 85 (677)
Q Consensus 40 ~~p~~~vkELveNSiD-AgAt~I~V~i~~~g~-~~i~V~DNG~GI~~~ 85 (677)
...+..+.|++.|=+. |.|+.|+|.+..++- -.+.|+|||.|+++.
T Consensus 409 vTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 409 VTLYRLCQELLNNICKHADASAVTIQLWQQDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred EeHHHHHHHHHHHHHhccccceEEEEEeeCCcEEEEEEecCCcCCCCC
Confidence 3578999999999876 899999999987665 578999999999853
No 78
>PRK10547 chemotaxis protein CheA; Provisional
Probab=96.30 E-value=0.015 Score=68.67 Aligned_cols=45 Identities=33% Similarity=0.523 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhhCCC--------------CceEEEEee-CCeeEEEEEeCCCCCCcccHh
Q 005789 44 SAVKELVENSLDADA--------------TSINVVVKD-GGLKLIQVSDDGHGIRYEDLP 88 (677)
Q Consensus 44 ~~vkELveNSiDAgA--------------t~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~ 88 (677)
..+..||.||+|.|- ..|.|.... ++.-.|.|.|||.||+++.+.
T Consensus 388 dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~ 447 (670)
T PRK10547 388 DPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERIL 447 (670)
T ss_pred HHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHH
Confidence 335689999999872 358888764 455579999999999998764
No 79
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=96.30 E-value=0.0075 Score=76.03 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHhhhhCCCC-ceEEEEe-----eC-CeeEEEEEeCCCCCCcccHhhhhhcccCCCc
Q 005789 41 RPVSAVKELVENSLDADAT-SINVVVK-----DG-GLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgAt-~I~V~i~-----~~-g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (677)
...+++..||.||+++... .|.|.+. .+ +.-.|.|.|||.||++++++.+|.+|.+++.
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~ 893 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA 893 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc
Confidence 4678999999999998643 3444432 12 2235899999999999999999999988764
No 80
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.30 E-value=0.014 Score=71.30 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhhhCC-CCceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCC
Q 005789 42 PVSAVKELVENSLDAD-ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (677)
Q Consensus 42 p~~~vkELveNSiDAg-At~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (677)
...++.+||.||+++. ...|.|.+.. ++.-.|.|.|||+||++++++.+|.+|.+.
T Consensus 562 l~qil~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~ 619 (914)
T PRK11466 562 IRQVITNLLSNALRFTDEGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQV 619 (914)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcC
Confidence 5678999999999975 4578888764 333469999999999999999999998854
No 81
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=96.29 E-value=0.0097 Score=57.68 Aligned_cols=59 Identities=24% Similarity=0.194 Sum_probs=42.9
Q ss_pred cCHHHHHHHHHHhhhhCCC-----CceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 40 QRPVSAVKELVENSLDADA-----TSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 40 ~~p~~~vkELveNSiDAgA-----t~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
....-||.|++.||+..|- ..|.|.+. .++.-.|.|.|+|.||+++.++..+.++.+.+
T Consensus 41 ~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~ 105 (161)
T PRK04069 41 EDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGPYDISK 105 (161)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCCCCCCC
Confidence 3456799999999999763 35677664 34444799999999999887766666655443
No 82
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.22 E-value=0.017 Score=71.04 Aligned_cols=58 Identities=28% Similarity=0.351 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHhhhhCCC-CceEEEEe--eCCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 41 RPVSAVKELVENSLDADA-TSINVVVK--DGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgA-t~I~V~i~--~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
....++..||.||+.+.. ..|.|.+. .++.-.|.|.|||.||+++++..+|.+|.+.+
T Consensus 579 ~l~~il~nLi~NAik~~~~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~ 639 (968)
T TIGR02956 579 RIRQVLINLVGNAIKFTDRGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQAD 639 (968)
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccC
Confidence 356899999999999753 45777664 34413699999999999999999999999876
No 83
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=96.07 E-value=0.019 Score=69.99 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhhhCCC-CceEEEEe--e--CC--eeEEEEEeCCCCCCcccHhhhhhcccCC
Q 005789 42 PVSAVKELVENSLDADA-TSINVVVK--D--GG--LKLIQVSDDGHGIRYEDLPILCERHTTS 97 (677)
Q Consensus 42 p~~~vkELveNSiDAgA-t~I~V~i~--~--~g--~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (677)
..+++..||.||+.+.. ..|.|.+. . ++ .-.|.|.|||.||++++++.+|.+|...
T Consensus 409 l~~vl~NLl~NAik~~~~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~ 471 (919)
T PRK11107 409 LQQIITNLVGNAIKFTESGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQA 471 (919)
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccC
Confidence 56899999999999853 34555543 2 11 2358999999999999999999998754
No 84
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.02 E-value=0.013 Score=62.59 Aligned_cols=73 Identities=30% Similarity=0.398 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHhhhhCC--CCceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCCcccccccccccccCccchh
Q 005789 41 RPVSAVKELVENSLDAD--ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (677)
Q Consensus 41 ~p~~~vkELveNSiDAg--At~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~i~t~GfRGeA 117 (677)
-..+++-.+|.||+..+ ...|+|.++. +..-.|.|.|+|.|||++|++.+|.||+-- |-..-.+.|=-|.+
T Consensus 342 K~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRv------dkARsR~~gGTGLG 415 (459)
T COG5002 342 KMTQVLDNIISNALKYSPDGGRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRV------DKARSRKMGGTGLG 415 (459)
T ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhh------hhhhhhcCCCCchh
Confidence 35789999999999976 4588888875 444478999999999999999999999743 22233567777888
Q ss_pred hh
Q 005789 118 LA 119 (677)
Q Consensus 118 La 119 (677)
||
T Consensus 416 La 417 (459)
T COG5002 416 LA 417 (459)
T ss_pred HH
Confidence 76
No 85
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=96.00 E-value=0.026 Score=69.48 Aligned_cols=57 Identities=21% Similarity=0.298 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhhhCCC-CceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 42 PVSAVKELVENSLDADA-TSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 42 p~~~vkELveNSiDAgA-t~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
..+++..||.||+.+.. ..|.|.+. .++.-.|+|.|||.||++++++.+|++|.+.+
T Consensus 563 L~qvl~NLl~NAik~t~~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~ 621 (924)
T PRK10841 563 LQQVISNLLSNAIKFTDTGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVG 621 (924)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCC
Confidence 56899999999999753 35777665 34444689999999999999999999998754
No 86
>PRK03660 anti-sigma F factor; Provisional
Probab=95.98 E-value=0.047 Score=51.40 Aligned_cols=58 Identities=24% Similarity=0.215 Sum_probs=40.7
Q ss_pred ccCHHHHHHHHHHhhhhCCC-----CceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 39 IQRPVSAVKELVENSLDADA-----TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 39 I~~p~~~vkELveNSiDAgA-----t~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
+..+..++.|++.|++..|. ..|.|.+.. ++.-.+.|.|||.||+. +...+.++.+++
T Consensus 37 ~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~ 100 (146)
T PRK03660 37 LTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEELEITVRDEGKGIED--IEEAMQPLYTTK 100 (146)
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCEEEEEEEEccCCCCh--HHHhhCCCcccC
Confidence 35677899999999997652 357776643 33346899999999974 555666655443
No 87
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=95.96 E-value=0.01 Score=67.57 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhhCCCC---------ceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcccCCCcc
Q 005789 42 PVSAVKELVENSLDADAT---------SINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (677)
Q Consensus 42 p~~~vkELveNSiDAgAt---------~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~ 100 (677)
.-+|.-.|+.||.+|... .|+++.+ .+|.-.+.|+|||.|.+.+++..++++|.|.|-.
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~K 669 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTREK 669 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceecccc
Confidence 468889999999998532 4777775 5677789999999999999999999999998854
No 88
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=95.95 E-value=0.011 Score=62.38 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHhhhhCCC------CceEEEE--------ee----CCeeEEEEEeCCCCCCcccHhhhhhcccCCCcc
Q 005789 41 RPVSAVKELVENSLDADA------TSINVVV--------KD----GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgA------t~I~V~i--------~~----~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~ 100 (677)
...+|+-.||.||..|.+ ..|.++- .. -++ -|.|.|||.||+++-.+.+|.++.|+|-.
T Consensus 241 qliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l-~leViDNGPGVP~~L~~~lF~P~Vs~r~~ 317 (363)
T COG3852 241 QLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLAL-PLEVIDNGPGVPPDLQDHLFYPMVSGREG 317 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeee-eeEEecCCCCCChHHhhhccccccccCCC
Confidence 356899999999999988 3444432 21 122 47899999999999999999999999854
No 89
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=95.95 E-value=0.034 Score=53.86 Aligned_cols=84 Identities=20% Similarity=0.167 Sum_probs=53.4
Q ss_pred ccCHHHHHHHHHHhhhhCCC-----CceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcccCCCcccccccccccccC
Q 005789 39 IQRPVSAVKELVENSLDADA-----TSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMG 112 (677)
Q Consensus 39 I~~p~~~vkELveNSiDAgA-----t~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~i~t~G 112 (677)
+....-||.|++-||+..|= ..|.|.+. .++.-.|.|.|+|.|++++.++..+.++.+.+.. ++ ...
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~--~~---~~~-- 112 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPI--DD---LRE-- 112 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccCCCCCCCCc--cc---CCC--
Confidence 34466799999999999762 46777664 3344468999999999988776655444333211 11 111
Q ss_pred ccchhhhhhhcce-EEEEE
Q 005789 113 FRGEALASMTYVG-HVTVT 130 (677)
Q Consensus 113 fRGeALaSIs~vs-~v~I~ 130 (677)
.|.+|+-+..++ .+.+.
T Consensus 113 -~G~GL~Li~~L~D~v~~~ 130 (159)
T TIGR01924 113 -GGLGLFLIETLMDEVEVY 130 (159)
T ss_pred -CccCHHHHHHhccEEEEE
Confidence 355666666666 35554
No 90
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.87 E-value=0.019 Score=68.20 Aligned_cols=62 Identities=32% Similarity=0.527 Sum_probs=45.4
Q ss_pred CChHHHHHHhcCCcccCHHHHHHHHHHhhhhCC--------------CCceEEEEe-eCCeeEEEEEeCCCCCCcccHh-
Q 005789 25 LEESVVNRIAAGEVIQRPVSAVKELVENSLDAD--------------ATSINVVVK-DGGLKLIQVSDDGHGIRYEDLP- 88 (677)
Q Consensus 25 L~~~v~~kIaAgevI~~p~~~vkELveNSiDAg--------------At~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~- 88 (677)
||..++.+|. .=+--||-||+|.| .-.|.++.. .||.-.|+|.|||.||+++-+.
T Consensus 425 lDksIlE~l~---------dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~ 495 (716)
T COG0643 425 LDKSILERLG---------DPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIRE 495 (716)
T ss_pred ehHHHHHHhc---------ccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHH
Confidence 5566555554 34668999999988 247888775 5777799999999999998864
Q ss_pred hhhhccc
Q 005789 89 ILCERHT 95 (677)
Q Consensus 89 ~~~~r~~ 95 (677)
++-+|+.
T Consensus 496 KAiErGl 502 (716)
T COG0643 496 KAIERGL 502 (716)
T ss_pred HHHHcCC
Confidence 3445543
No 91
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=95.68 E-value=0.016 Score=63.86 Aligned_cols=60 Identities=27% Similarity=0.284 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHhhhhCCC---CceEEEEe--eCCeeEEEEEeCCCCCCcccHhhhhhcccCCCcc
Q 005789 41 RPVSAVKELVENSLDADA---TSINVVVK--DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgA---t~I~V~i~--~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~ 100 (677)
+..+++-.|+-||+||.. .-|.|... .++.-.|-|+|||.|-+-+-++.++.+|+|||--
T Consensus 564 ~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~v 628 (673)
T COG4192 564 SIEQVLVNLIVNALDASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKEV 628 (673)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEeecCcccceEEEEecCCCCCchhHHHHhcCCccccccc
Confidence 578999999999999984 45777664 3555578999999999999999999999999954
No 92
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=95.50 E-value=0.022 Score=64.02 Aligned_cols=44 Identities=32% Similarity=0.497 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhhh-CCCCceEEEEeeC-CeeEEEEEeCCCCCCcc
Q 005789 42 PVSAVKELVENSLD-ADATSINVVVKDG-GLKLIQVSDDGHGIRYE 85 (677)
Q Consensus 42 p~~~vkELveNSiD-AgAt~I~V~i~~~-g~~~i~V~DNG~GI~~~ 85 (677)
..++|+|-+-|++. |.|+.|.|.+..+ |--.+.|+|||+||+..
T Consensus 482 lLqIvREAlsNa~KHa~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 482 LLQIVREALSNAIKHAQASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 56899999999998 8899999999754 66689999999999975
No 93
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=95.48 E-value=0.022 Score=66.96 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhhhCCCC--ceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCC
Q 005789 42 PVSAVKELVENSLDADAT--SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (677)
Q Consensus 42 p~~~vkELveNSiDAgAt--~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (677)
..+|+-.|||||+-...+ .|.|.+.. ...-.+.|.|||.||+.++++.+|.+|++-
T Consensus 776 ieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~ 834 (890)
T COG2205 776 IEQVLINLLENALKYAPPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRG 834 (890)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcC
Confidence 358999999999997644 45555543 334478999999999999999999999875
No 94
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=95.02 E-value=0.039 Score=63.13 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhhC-CCCceEEEEee-CCeeEEEEEeCCCCCCccc
Q 005789 42 PVSAVKELVENSLDA-DATSINVVVKD-GGLKLIQVSDDGHGIRYED 86 (677)
Q Consensus 42 p~~~vkELveNSiDA-gAt~I~V~i~~-~g~~~i~V~DNG~GI~~~d 86 (677)
...++.|++.||+.+ +++.|.|++.. ++.-.++|.|||.||++++
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~~ 457 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVIEDDGSGLPPGS 457 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEEcCCEEEEEEEECCCCCCcCC
Confidence 456889999999995 46788888753 4445799999999998763
No 95
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=94.63 E-value=0.1 Score=47.72 Aligned_cols=76 Identities=24% Similarity=0.267 Sum_probs=50.7
Q ss_pred cCHHHHHHHHHHhhhhCCCC-----ceEEEEe--eCCeeEEEEEeCCCCCCcccHhhhhhcccCCCcccccccccccccC
Q 005789 40 QRPVSAVKELVENSLDADAT-----SINVVVK--DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMG 112 (677)
Q Consensus 40 ~~p~~~vkELveNSiDAgAt-----~I~V~i~--~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~i~t~G 112 (677)
....-||.|++-|++..|.. .|.|.+. .+++ .|.|.|+|.|+++..++..-..-. ....
T Consensus 30 ~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~l-~i~v~D~G~~~d~~~~~~~~~~~~-------------~~~~ 95 (125)
T PF13581_consen 30 DDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDRL-RISVRDNGPGFDPEQLPQPDPWEP-------------DSLR 95 (125)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCEE-EEEEEECCCCCChhhccCcccccC-------------CCCC
Confidence 35677999999999998754 5777654 4444 689999999988765433211000 2234
Q ss_pred ccchhhhhhhcce-EEEE
Q 005789 113 FRGEALASMTYVG-HVTV 129 (677)
Q Consensus 113 fRGeALaSIs~vs-~v~I 129 (677)
-+|.+|.-|.+++ ++.+
T Consensus 96 ~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 96 EGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred CCCcCHHHHHHHHcEEEE
Confidence 4566777777776 4766
No 96
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.58 E-value=0.057 Score=59.06 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHhhhh-CCCCceEEEEee-CCeeEEEEEeCCCCCCccc
Q 005789 41 RPVSAVKELVENSLD-ADATSINVVVKD-GGLKLIQVSDDGHGIRYED 86 (677)
Q Consensus 41 ~p~~~vkELveNSiD-AgAt~I~V~i~~-~g~~~i~V~DNG~GI~~~d 86 (677)
...-+|+|.|-|++- |+|+.|.|.+.. ++.-.++|+|||.|.+.+.
T Consensus 279 ~l~rivQEaltN~~rHa~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~ 326 (365)
T COG4585 279 ALFRIVQEALTNAIRHAQATEVRVTLERTDDELRLEVIDNGVGFDPDK 326 (365)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEEEEcCCEEEEEEEECCcCCCccc
Confidence 357899999999998 789999999963 3334799999999998764
No 97
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=94.16 E-value=0.08 Score=61.42 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhhC-CCCceEEEEee-CCeeEEEEEeCCCCCCccc
Q 005789 42 PVSAVKELVENSLDA-DATSINVVVKD-GGLKLIQVSDDGHGIRYED 86 (677)
Q Consensus 42 p~~~vkELveNSiDA-gAt~I~V~i~~-~g~~~i~V~DNG~GI~~~d 86 (677)
...++.|+|.||+.+ +|+.|.|.+.. ++.-.|.|.|||.||+++.
T Consensus 470 l~~il~ell~NA~kha~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~~ 516 (569)
T PRK10600 470 LLQIAREALSNALKHAQASEVVVTVAQNQNQVKLSVQDNGCGVPENA 516 (569)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCccc
Confidence 457899999999995 57789988864 4445789999999998753
No 98
>PRK13560 hypothetical protein; Provisional
Probab=93.42 E-value=0.12 Score=61.87 Aligned_cols=43 Identities=30% Similarity=0.473 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhhCC-----CCceEEEEee--CCeeEEEEEeCCCCCCcc
Q 005789 43 VSAVKELVENSLDAD-----ATSINVVVKD--GGLKLIQVSDDGHGIRYE 85 (677)
Q Consensus 43 ~~~vkELveNSiDAg-----At~I~V~i~~--~g~~~i~V~DNG~GI~~~ 85 (677)
..++.+|+.||+++. +..|.|.+.. ++.-.|.|.|||+||+++
T Consensus 713 ~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 713 GLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 457889999999963 2467877754 455579999999999975
No 99
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=91.72 E-value=0.28 Score=50.24 Aligned_cols=45 Identities=31% Similarity=0.343 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHhhhhCCCC-----ceEEEEe--eCC-eeEEEEEeCCCCCCcc
Q 005789 41 RPVSAVKELVENSLDADAT-----SINVVVK--DGG-LKLIQVSDDGHGIRYE 85 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgAt-----~I~V~i~--~~g-~~~i~V~DNG~GI~~~ 85 (677)
.+.-+|.||+-||+..|+. .|.|.+. .++ ...+.|.|||.|++.+
T Consensus 122 ~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 122 PLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 3567899999999998865 5666665 333 2578999999999854
No 100
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=91.44 E-value=0.34 Score=55.68 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhhhCC-CCceEEEEee--CCeeEEEEEeCCCCCCcc
Q 005789 42 PVSAVKELVENSLDAD-ATSINVVVKD--GGLKLIQVSDDGHGIRYE 85 (677)
Q Consensus 42 p~~~vkELveNSiDAg-At~I~V~i~~--~g~~~i~V~DNG~GI~~~ 85 (677)
...++.+|+.||+.++ +..|.|.+.. ++.-.|.|.|||+||+++
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVTNPDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCEEEEEEEECCcCcCCC
Confidence 4578999999999854 5578888753 455579999999999964
No 101
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=90.53 E-value=1.7 Score=41.58 Aligned_cols=54 Identities=30% Similarity=0.334 Sum_probs=38.6
Q ss_pred ccCHHHHHHHHHHhhhhCC-C-----CceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcc
Q 005789 39 IQRPVSAVKELVENSLDAD-A-----TSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERH 94 (677)
Q Consensus 39 I~~p~~~vkELveNSiDAg-A-----t~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~ 94 (677)
+.+...||-|++.|++.++ + +.|.|.+. .++.-.|.|.|.|.||. ++.....+.
T Consensus 38 ~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~ 98 (146)
T COG2172 38 IADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPG 98 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCC
Confidence 3568899999999999954 3 45666654 33445699999997776 666665554
No 102
>PRK13559 hypothetical protein; Provisional
Probab=90.38 E-value=0.41 Score=51.70 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHhhhhCCC-----CceEEEE--e-eCCeeEEEEEeCCCCCCcc
Q 005789 41 RPVSAVKELVENSLDADA-----TSINVVV--K-DGGLKLIQVSDDGHGIRYE 85 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgA-----t~I~V~i--~-~~g~~~i~V~DNG~GI~~~ 85 (677)
.+..++.||+.||+.+|+ ..|.|.+ . .++.-.|.|.|||.|++++
T Consensus 267 ~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 267 PLGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCC
Confidence 356799999999999864 4788887 3 2444578999999998754
No 103
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=90.33 E-value=0.65 Score=54.97 Aligned_cols=169 Identities=18% Similarity=0.199 Sum_probs=98.3
Q ss_pred HHHhcCCcccCHHHHHHHHHHhhhh----CCCCceEEEEeeCCeeEEEEEeCCCCCCcccHh--------hhh-hcccCC
Q 005789 31 NRIAAGEVIQRPVSAVKELVENSLD----ADATSINVVVKDGGLKLIQVSDDGHGIRYEDLP--------ILC-ERHTTS 97 (677)
Q Consensus 31 ~kIaAgevI~~p~~~vkELveNSiD----AgAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl~--------~~~-~r~~TS 97 (677)
++.-.+..+..+..+.-|.+-||.| ++-..|.|.|+...- .|.|.+||.||+-+..+ ++| .-|+.|
T Consensus 43 ~k~~~~t~~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~~-~isv~nnGkGIPv~~H~~ek~yvpelifg~Lltss 121 (842)
T KOG0355|consen 43 RKMVQRTYVPGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEKN-EISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSS 121 (842)
T ss_pred CceeEeecCCcHHHHHHHHhhcccccccCCCcceeEEEEccCCC-EEEEEeCCCcceeeecccccccchHHHHhhhhhcc
Confidence 3344446788899999999999998 456688888876554 58999999999987743 333 345666
Q ss_pred CcccccccccccccCccchhhhhhhcce--EEEEEEEeCCCcceEEEEEeCCeecc-cc--ccccCCCceEEEEEeeecc
Q 005789 98 KLSKYEDLQSIKSMGFRGEALASMTYVG--HVTVTTITKGHLHGYRVSYRDGVMES-EP--KACAAVKGTQIMVENLFYN 172 (677)
Q Consensus 98 K~~~~~dl~~i~t~GfRGeALaSIs~vs--~v~I~Tr~~~~~~~~~~~~~~g~~~~-~~--~~~~~~~GTtV~v~dLF~n 172 (677)
++. |-. -+..|=|+---|-+|.+= +.++.|-.......|+..|.++-... ++ .+...+.+|.|+..
T Consensus 122 ny~---d~e-kK~tggrngygakLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~i~~~~~~~yTkitF~----- 192 (842)
T KOG0355|consen 122 NYD---DDE-KKVTGGRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPSTDEDYTKITFS----- 192 (842)
T ss_pred ccC---CCc-cccccCCCccceeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCceeecCCCCCcceEEeC-----
Confidence 654 322 234443332333344442 34555544444455666665554431 11 23445569999985
Q ss_pred chhhhhcccCCchhHHHHHHHHHHH--HhcCCCeEEEEEECC
Q 005789 173 MIARRKTLQNSSDDYTKIVDLLSRM--AIHHTNVSFSCRKHG 212 (677)
Q Consensus 173 ~PvRrk~l~~~~~e~~~i~~~v~~y--Al~~p~v~F~l~~~g 212 (677)
|.-.+|.-. +-=..+++++.+. -+.-+-.+..+..++
T Consensus 193 -PDl~~F~m~--eLD~Div~l~~rr~~d~a~~~~~vkv~ln~ 231 (842)
T KOG0355|consen 193 -PDLEKFKMK--ELDDDIVALMARRAYDLAGSVKSVKVELNG 231 (842)
T ss_pred -cChHhcCch--hhcchHHHhHHhhhhhhcccccceeeeecC
Confidence 766665422 1112356666543 333333444444454
No 104
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=89.73 E-value=0.44 Score=54.01 Aligned_cols=50 Identities=32% Similarity=0.450 Sum_probs=39.0
Q ss_pred cCHHHHHHHHHHhhhhCCCC------ceEEEEe-eCCeeEEEEEeCCCCCCcccHhh
Q 005789 40 QRPVSAVKELVENSLDADAT------SINVVVK-DGGLKLIQVSDDGHGIRYEDLPI 89 (677)
Q Consensus 40 ~~p~~~vkELveNSiDAgAt------~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~ 89 (677)
..|.-++.=|||||+-||-. .|.|.+. .++.-.++|.|||.||+++....
T Consensus 349 ~~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~ 405 (456)
T COG2972 349 IDPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEG 405 (456)
T ss_pred cCchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHH
Confidence 46788899999999999832 6666665 35666899999999999766543
No 105
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=88.16 E-value=0.63 Score=52.10 Aligned_cols=45 Identities=29% Similarity=0.426 Sum_probs=33.9
Q ss_pred cCHHHHHHHHHHhhhhCC------CCceEEEEe--eCCeeEEEEEeCCCCCCcc
Q 005789 40 QRPVSAVKELVENSLDAD------ATSINVVVK--DGGLKLIQVSDDGHGIRYE 85 (677)
Q Consensus 40 ~~p~~~vkELveNSiDAg------At~I~V~i~--~~g~~~i~V~DNG~GI~~~ 85 (677)
.=|+=.+.=||||||-.| .-.|+|.+. +.+ -.|.|+|||.||+++
T Consensus 455 ~iP~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~-l~i~VeDng~li~p~ 507 (557)
T COG3275 455 QIPSFILQPLVENAIKHGISQLKDTGRVTISVEKEDAD-LRIEVEDNGGLIQPD 507 (557)
T ss_pred cCchhhhhHHHHHHHHhcccchhcCCceEEEEEEeCCe-EEEEEecCCCCcCCC
Confidence 346777889999999876 335566554 444 369999999999986
No 106
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=87.28 E-value=1.4 Score=48.05 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=51.6
Q ss_pred ccC-HHHHHHHHHHhhhhCC----------CCceEEEEeeCCe-eEEEEEeCCCCCCcccHhhhhhcccCCCc-cccccc
Q 005789 39 IQR-PVSAVKELVENSLDAD----------ATSINVVVKDGGL-KLIQVSDDGHGIRYEDLPILCERHTTSKL-SKYEDL 105 (677)
Q Consensus 39 I~~-p~~~vkELveNSiDAg----------At~I~V~i~~~g~-~~i~V~DNG~GI~~~dl~~~~~r~~TSK~-~~~~dl 105 (677)
|.+ +...+-||+.||..|- -.-|.|.|..|.- -.|.|.|-|-||+.++++.+|.-+.+.-- .+.++-
T Consensus 257 vPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~ 336 (414)
T KOG0787|consen 257 VPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNN 336 (414)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCC
Confidence 444 6788999999999983 2347888754332 26899999999999999999976543321 122222
Q ss_pred --ccccccCc
Q 005789 106 --QSIKSMGF 113 (677)
Q Consensus 106 --~~i~t~Gf 113 (677)
..+..|||
T Consensus 337 ~~~plaGfG~ 346 (414)
T KOG0787|consen 337 RTAPLAGFGF 346 (414)
T ss_pred CcCccccccc
Confidence 24567777
No 107
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=84.33 E-value=1.6 Score=46.73 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=36.2
Q ss_pred cCHHHHHHHHHHhhh-hCCCCceEEEEee-CCeeEEEEEeCCCCCCccc
Q 005789 40 QRPVSAVKELVENSL-DADATSINVVVKD-GGLKLIQVSDDGHGIRYED 86 (677)
Q Consensus 40 ~~p~~~vkELveNSi-DAgAt~I~V~i~~-~g~~~i~V~DNG~GI~~~d 86 (677)
+..+.++.|-+-|== .||||+|+|.+.. ++.-.+.|.|||.|.+...
T Consensus 358 talyRv~QEaltNIErHa~Atrv~ill~~~~d~vql~vrDnG~GF~~~~ 406 (459)
T COG4564 358 TALYRVVQEALTNIERHAGATRVTILLQQMGDMVQLMVRDNGVGFSVKE 406 (459)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEEeccCCcceEEEEecCCCCccchh
Confidence 446677778777742 3899999999974 5555789999999998654
No 108
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=83.24 E-value=3.6 Score=47.80 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=64.6
Q ss_pred cccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCC---CceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCC
Q 005789 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADA---TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (677)
Q Consensus 22 I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgA---t~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (677)
|-.||.-..+.+. ..++...||.|||-.|. ..|.|.... +....+.|.|||.||++.-++.+|.-|-.
T Consensus 624 i~~lp~v~~d~~~-------l~qv~~NLi~Naik~~~~e~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqR- 695 (750)
T COG4251 624 IAPLPVVAADATQ-------LGQVFQNLIANAIKFGGPENPDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQR- 695 (750)
T ss_pred ecccceeecCHHH-------HHHHHHHHHhhheecCCCCCCceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHh-
Confidence 4445554444444 44567789999999875 458887653 33346899999999999999887643221
Q ss_pred CcccccccccccccCccchhhh---hhhcc--eEEEEEEEeCCCcceEEEEEeCC
Q 005789 98 KLSKYEDLQSIKSMGFRGEALA---SMTYV--GHVTVTTITKGHLHGYRVSYRDG 147 (677)
Q Consensus 98 K~~~~~dl~~i~t~GfRGeALa---SIs~v--s~v~I~Tr~~~~~~~~~~~~~~g 147 (677)
+++.+ -|+-.|.+|+ -|..+ +++.+.|+..+ -.++......|
T Consensus 696 -l~s~~------~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gE-gsTF~f~lp~~ 742 (750)
T COG4251 696 -LHSRD------EYLGTGLGLAICKKIAERHQGRIWVESTPGE-GSTFYFTLPVG 742 (750)
T ss_pred -cCchh------hhcCCCccHHHHHHHHHHhCceEEEeecCCC-ceeEEEEeecC
Confidence 11111 1222566654 33333 35677776432 24454444433
No 109
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=41.16 E-value=16 Score=43.02 Aligned_cols=82 Identities=15% Similarity=0.051 Sum_probs=63.8
Q ss_pred cccccEEEEEEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHhcCcCeEecCCCcChhHHHhhhccccccccccCcCc
Q 005789 467 IVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSDPAPLSELLMLALKEEDLDVENSEND 546 (677)
Q Consensus 467 ~~~~~~~VG~vd~~yiLiQ~~~~LyLIDqhaahEei~YQ~~l~~fgn~~~q~L~~P~~l~~Ll~l~l~~~~~~~~~~~~~ 546 (677)
.+..+..+-|||..||-+=-.++.-++||||+.|+..-|..-+.|- ..-.|.+|+.|. . -|
T Consensus 909 ~i~~~qvlqqvDkkyi~~v~~~~~~~~~qha~dek~~~q~~~~k~l--~~s~li~~l~~k------v--lp--------- 969 (1142)
T KOG1977|consen 909 MIHSMQVLQQVDKKYIACVMSTKTEENGQHASDEKQQAQGSGRKKL--LSSTLIPPLEIK------V--LP--------- 969 (1142)
T ss_pred chhhHHHHHhhchhheeeeeeccccccccchhHHHHHhhhhccccc--cccccccceeEE------e--ch---------
Confidence 3446778899999999999999999999999999999998777763 344666776665 1 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcceEEe
Q 005789 547 DLKEKIAEMNTELLKQKAEMLEEYFCVKID 576 (677)
Q Consensus 547 ~~~~~~~~~~~~~L~~~~emL~eYFgi~Ie 576 (677)
....+|+.+.+-+++| |.++.
T Consensus 970 --------m~~~ll~~Y~~~~~d~-gw~~~ 990 (1142)
T KOG1977|consen 970 --------MQRRLLWCYHKNLEDL-GWEFV 990 (1142)
T ss_pred --------hhHHHHHHHHHHhhhh-ceEEe
Confidence 1567899999999995 87753
No 110
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=32.31 E-value=31 Score=37.84 Aligned_cols=80 Identities=26% Similarity=0.451 Sum_probs=53.2
Q ss_pred cccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCCCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCCCccc
Q 005789 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSK 101 (677)
Q Consensus 22 I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~ 101 (677)
++.+|.+-.|-+.+... -.-|||.-|+|+||++|.|-| ||. --.|-|.|| +..++-+|.-.-
T Consensus 96 L~lVp~~~rnpl~~ts~------GtGeLI~~Ald~Ga~~IiiGi--GGS---ATnDgG~Gm----l~ALG~~f~d~~--- 157 (378)
T COG1929 96 LHLVPPEKRNPLITTSY------GTGELIKHALDAGAKHIIIGI--GGS---ATNDGGAGM----LQALGAQFLDAD--- 157 (378)
T ss_pred CCCCCccccCccccccc------cHHHHHHHHHhCCCcEEEEec--ccc---ccCCchHHH----HHHhCchhhhcc---
Confidence 55555554443332221 256999999999999999877 443 346889998 455665554321
Q ss_pred ccccccccccCccchhhhhhhcce
Q 005789 102 YEDLQSIKSMGFRGEALASMTYVG 125 (677)
Q Consensus 102 ~~dl~~i~t~GfRGeALaSIs~vs 125 (677)
-..+|+-|-.|+.|+++.
T Consensus 158 ------g~~i~~gG~~L~~l~~id 175 (378)
T COG1929 158 ------GNDLGFGGGSLANLASID 175 (378)
T ss_pred ------CCCccccchhhhhhhhcc
Confidence 245888899998887774
No 111
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=31.41 E-value=37 Score=40.89 Aligned_cols=57 Identities=30% Similarity=0.320 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhh---CCCCceEEE---EeeCC-eeEEEEE-----eCCCCCCcccHhhhhhcccCCCc
Q 005789 43 VSAVKELVENSLD---ADATSINVV---VKDGG-LKLIQVS-----DDGHGIRYEDLPILCERHTTSKL 99 (677)
Q Consensus 43 ~~~vkELveNSiD---AgAt~I~V~---i~~~g-~~~i~V~-----DNG~GI~~~dl~~~~~r~~TSK~ 99 (677)
..++.|||+||+| .|||-+.|. ...++ .....|+ |||-||.++-+..-.--...+|+
T Consensus 148 ~~a~aeLldnalDEi~~~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~ 216 (775)
T KOG1845|consen 148 KGAIAELLDNALDEITNGATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKK 216 (775)
T ss_pred cChhhhhccccccccccccceEEeeeecccccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhh
Confidence 3588999999999 677764442 12333 3445555 77999998765433222333454
No 112
>PF14501 HATPase_c_5: GHKL domain
Probab=26.24 E-value=2.6e+02 Score=24.20 Aligned_cols=38 Identities=16% Similarity=0.396 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHhhhhCC-----CCceEEEEee-CCeeEEEEEeC
Q 005789 41 RPVSAVKELVENSLDAD-----ATSINVVVKD-GGLKLIQVSDD 78 (677)
Q Consensus 41 ~p~~~vkELveNSiDAg-----At~I~V~i~~-~g~~~i~V~DN 78 (677)
+...++--|++||++|. ...|.|.+.. +|.-.|.|.-.
T Consensus 5 dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~~~i~i~N~ 48 (100)
T PF14501_consen 5 DLCRILGNLLDNAIEACKKYEDKRFISISIREENGFLVIIIENS 48 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEEC
Confidence 35678889999999974 3467777753 45545555544
No 113
>PF04025 DUF370: Domain of unknown function (DUF370); InterPro: IPR007169 This is a bacterial family of unknown function.
Probab=24.93 E-value=1.1e+02 Score=26.03 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=26.2
Q ss_pred CHHHH-HHHHHHhhhhCCCCceEEEEeeCC-eeEEEEEeCCC
Q 005789 41 RPVSA-VKELVENSLDADATSINVVVKDGG-LKLIQVSDDGH 80 (677)
Q Consensus 41 ~p~~~-vkELveNSiDAgAt~I~V~i~~~g-~~~i~V~DNG~ 80 (677)
+|.++ +|+|+++|-+.|- -|.+..|. .+.+-|+|.|+
T Consensus 20 ~~~Sap~Krl~~~ak~~~~---lIdaT~Grktrsviitdsgh 58 (73)
T PF04025_consen 20 SPDSAPIKRLIQEAKEEGK---LIDATYGRKTRSVIITDSGH 58 (73)
T ss_pred CCcchhHHHHHHHHHHcCc---EEEeeCCCceeEEEEEcCCc
Confidence 44444 9999999999875 34443343 34799999998
No 114
>PRK13669 hypothetical protein; Provisional
Probab=24.09 E-value=73 Score=27.33 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=28.5
Q ss_pred cceEEEEEEeCCCCCCCCceEEEEEcCeecCChhHHHHHHHHHhhc
Q 005789 256 FVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAAT 301 (677)
Q Consensus 256 ~~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~ 301 (677)
.++.-.|-+|.-..-++ .-|-+||||+|....=...++++|+..
T Consensus 29 ~dVie~gCls~CG~C~~--~~FAlVng~~V~a~t~eeL~~kI~~~i 72 (78)
T PRK13669 29 LDVLEYGCLGYCGICSE--GLFALVNGEVVEGETPEELVENIYAHL 72 (78)
T ss_pred ceEEEcchhhhCcCccc--CceEEECCeEeecCCHHHHHHHHHHHH
Confidence 34555565554433332 348999999999887666666666643
No 115
>PF15368 BioT2: Spermatogenesis family BioT2
Probab=23.67 E-value=2.5e+02 Score=27.24 Aligned_cols=86 Identities=19% Similarity=0.286 Sum_probs=60.5
Q ss_pred CcCeEecCCCcChhHHHhhhccccccccccCcCchhHHHHHHHHHHHHHHHHHHHhhhcceEEeeCCC-------eeccC
Q 005789 513 HFNAIQLSDPAPLSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGN-------LSRLP 585 (677)
Q Consensus 513 n~~~q~L~~P~~l~~Ll~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~emL~eYFgi~Ie~~G~-------L~siP 585 (677)
.+....|-.|.+=+.++..|+..+ +.-+.+-.+.++++.+++.-|..-..-|.+-||.+++ +|. -.+++
T Consensus 47 kiEpMVLrsPPTgESivryALPIP---ssktkell~~de~irkitkhLkmvVstLEeTyG~~~~-~gek~~~kpE~ee~~ 122 (170)
T PF15368_consen 47 KIEPMVLRSPPTGESIVRYALPIP---SSKTKELLSEDEMIRKITKHLKMVVSTLEETYGLDIQ-NGEKPIVKPEQEELS 122 (170)
T ss_pred ccccccccCCCCchhHHHhhcCCC---chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcccc-cccccccCCcccccc
Confidence 456788888999999999998543 3445555667788888888888888889999999976 454 44554
Q ss_pred cccCCCCCCCCCHHHHHH---HhcCC
Q 005789 586 IILDQYTPDMDRIPEFVL---CLGND 608 (677)
Q Consensus 586 ~lL~~y~P~~~~Lp~fl~---~La~~ 608 (677)
+-.+ +.+-.||+ .+|.+
T Consensus 123 lsvg------dD~~SFL~~CS~faaQ 142 (170)
T PF15368_consen 123 LSVG------DDMNSFLLCCSQFAAQ 142 (170)
T ss_pred cccc------ccHHHHHHHHHHHHHH
Confidence 4443 55666665 34544
No 116
>COG3938 Proline racemase [Amino acid transport and metabolism]
Probab=20.97 E-value=1.4e+02 Score=32.02 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=57.1
Q ss_pred CCCceEEEEeeCCeeEEEEEe--CCCCCCcccHhhhhhcccCCCcccccccccccccCccchhhhhhhcceEEEEEEEeC
Q 005789 57 DATSINVVVKDGGLKLIQVSD--DGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITK 134 (677)
Q Consensus 57 gAt~I~V~i~~~g~~~i~V~D--NG~GI~~~dl~~~~~r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs~v~I~Tr~~ 134 (677)
|=-.|+|.+..||..+..|.= +|..|.+++...+.. ++-|++.. --..++|+..-...|..+|++.++-+..
T Consensus 160 glG~l~vDiAYGG~~yaiVd~~~~g~~l~~~~A~~L~~--~g~~i~~a----~n~~~~f~HPe~p~i~~~s~~~~~~~~~ 233 (341)
T COG3938 160 GLGRLTVDIAYGGNFYAIVDAQANGFDLAPDEAGELVA--LGVKIRQA----LNEQLDFVHPENPDIRGVSHCQFAGPPV 233 (341)
T ss_pred CcceEEEEEeeCceEEEEEehHHcCcccCccchHHHHH--hHHHHHHH----HhhhcCccCCCCCccCceeEEEEeCCCc
Confidence 345788888888876544443 899999998876653 22344432 1145899999999999999998887544
Q ss_pred CC--cceEEEEEeCCee
Q 005789 135 GH--LHGYRVSYRDGVM 149 (677)
Q Consensus 135 ~~--~~~~~~~~~~g~~ 149 (677)
+. .....+.|.+|++
T Consensus 234 ~~~~~~Rnav~~~p~~~ 250 (341)
T COG3938 234 RPGADLRNAVFYGPKAI 250 (341)
T ss_pred CcCccccceEEECCCcc
Confidence 32 2222344455554
No 117
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.49 E-value=1.5e+02 Score=27.23 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=41.9
Q ss_pred eccchhhhhcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCeeeEEEEeCCCCCHHHHHHHHhChh
Q 005789 170 FYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVS 237 (677)
Q Consensus 170 F~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~~~~~l~t~~~~s~~~~i~~i~G~~ 237 (677)
|||-+.+++++.=+-.+.+++ ....++-.=.-.|.+.-+...+..|.+..++..+..++.-.|.+
T Consensus 36 FYn~~nv~k~iqipWs~i~~v---~vsvs~KK~~~~f~i~td~~gk~~FaSkdsg~iLk~ir~yvg~~ 100 (122)
T COG4687 36 FYNDRNVEKFIQIPWSEINEV---DVSVSLKKWGRQFSIFTDTQGKVRFASKDSGKILKKIREYVGNE 100 (122)
T ss_pred ecCCCChhheeEecHHHhhee---heeehhhhhcceEEEEEcCCceEEEEeCCchhHHHHHHHHhCcc
Confidence 899999999887554444332 22222221122355554434488898888899999999888865
Done!