Query 005789
Match_columns 677
No_of_seqs 328 out of 2048
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 07:28:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na3_A DNA mismatch repair pro 100.0 3.4E-83 1.1E-87 684.8 30.6 343 19-365 6-348 (348)
2 3h4l_A DNA mismatch repair pro 100.0 5E-78 1.7E-82 650.2 29.3 335 19-356 3-362 (367)
3 1h7s_A PMS1 protein homolog 2; 100.0 2.7E-72 9.4E-77 607.3 30.2 334 18-353 11-364 (365)
4 1b63_A MUTL; DNA mismatch repa 100.0 7E-71 2.4E-75 590.8 32.0 326 18-352 2-332 (333)
5 3rbn_A DNA mismatch repair pro 100.0 5.6E-51 1.9E-55 418.6 15.1 193 442-636 32-224 (284)
6 1s16_A Topoisomerase IV subuni 100.0 6.6E-32 2.2E-36 293.9 27.2 308 20-353 8-359 (390)
7 3cwv_A DNA gyrase, B subunit, 100.0 7.7E-31 2.6E-35 283.3 29.4 294 31-355 15-347 (369)
8 1ei1_A DNA gyrase B, GYRB; ATP 100.0 3.6E-31 1.2E-35 288.0 24.4 278 21-322 8-332 (391)
9 3fv5_A DNA topoisomerase 4 sub 100.0 1.5E-31 5.1E-36 266.3 15.1 167 32-212 6-192 (201)
10 1y4s_A Chaperone protein HTPG; 100.0 3.3E-28 1.1E-32 274.1 15.0 290 22-352 13-356 (559)
11 2ioq_A Chaperone protein HTPG; 99.9 2.4E-28 8.3E-33 278.3 11.8 290 21-351 12-355 (624)
12 1kij_A DNA gyrase subunit B; t 99.9 1.6E-26 5.4E-31 251.8 21.3 257 21-301 7-294 (390)
13 2o1u_A Endoplasmin; GRP94, HSP 99.9 1.3E-26 4.4E-31 264.9 9.9 286 21-350 30-378 (666)
14 4duh_A DNA gyrase subunit B; s 99.9 9.1E-25 3.1E-29 219.8 15.5 180 20-212 8-209 (220)
15 3t0h_A Heat shock protein HSP 99.9 9.2E-26 3.1E-30 228.2 6.8 164 21-202 17-209 (228)
16 3o0i_A HSP90AA1 protein; HSP90 99.9 5.3E-25 1.8E-29 225.1 5.9 168 21-203 45-238 (256)
17 4emv_A DNA topoisomerase IV, B 99.9 4.8E-23 1.6E-27 207.8 15.5 179 20-212 14-215 (226)
18 1zxm_A TOPO IIA ATPase, DNA to 99.9 4.5E-23 1.5E-27 224.4 14.6 254 21-302 5-313 (400)
19 2ior_A Chaperone protein HTPG; 99.9 2.1E-23 7.1E-28 212.6 8.8 167 20-202 31-227 (235)
20 3lnu_A Topoisomerase IV subuni 99.9 2.1E-20 7.3E-25 202.9 28.4 305 20-354 27-378 (408)
21 3ttz_A DNA gyrase subunit B; p 99.9 5.9E-22 2E-26 196.4 14.0 165 21-212 6-182 (198)
22 2gqp_A Endoplasmin; GRP94, HSP 99.8 5.4E-21 1.8E-25 194.8 10.8 172 20-209 16-220 (236)
23 1yc1_A HSP 86, heat shock prot 99.8 1.9E-20 6.4E-25 193.5 8.2 166 22-202 54-243 (264)
24 2wer_A ATP-dependent molecular 99.8 3.3E-19 1.1E-23 179.9 10.7 166 22-206 12-207 (220)
25 3kdg_A DNA mismatch repair pro 99.8 1.3E-18 4.5E-23 172.6 9.6 140 466-633 4-149 (197)
26 3ncv_A DNA mismatch repair pro 99.7 3.5E-18 1.2E-22 172.1 10.0 162 466-656 25-194 (220)
27 2q2e_B Type 2 DNA topoisomeras 99.7 6.2E-19 2.1E-23 201.2 1.9 201 40-266 36-264 (621)
28 2zbk_B Type 2 DNA topoisomeras 99.7 2.7E-18 9.3E-23 193.3 6.0 201 40-267 30-261 (530)
29 1mu5_A Type II DNA topoisomera 99.7 4.3E-18 1.5E-22 189.6 7.2 200 41-267 32-262 (471)
30 1qy5_A Endoplasmin; GRP94, NEC 99.7 1.3E-17 4.4E-22 172.5 9.0 171 21-209 13-216 (269)
31 1x9z_A DNA mismatch repair pro 99.6 5.2E-16 1.8E-20 152.8 10.4 129 468-629 6-138 (188)
32 2cg9_A ATP-dependent molecular 99.6 2.6E-15 8.7E-20 172.0 12.9 153 37-206 22-207 (677)
33 3peh_A Endoplasmin homolog; st 99.5 1.4E-14 4.7E-19 149.6 11.6 170 22-210 32-232 (281)
34 1pvg_A DNA topoisomerase II; G 99.5 2.9E-14 9.7E-19 156.0 13.4 178 21-210 16-244 (418)
35 3nmq_A Heat shock protein HSP 99.5 2.7E-14 9.2E-19 144.6 8.3 152 36-201 34-213 (239)
36 3ied_A Heat shock protein; HSP 99.2 4.7E-11 1.6E-15 121.0 9.8 126 60-200 120-262 (272)
37 4gfh_A DNA topoisomerase 2; to 98.8 5.5E-08 1.9E-12 118.2 15.3 171 21-203 11-229 (1177)
38 1th8_A Anti-sigma F factor; SP 98.1 1.9E-05 6.6E-10 72.6 10.8 73 41-125 39-117 (145)
39 1bxd_A ENVZ(290-450), protein 98.1 1.4E-05 4.9E-10 74.6 9.9 59 41-99 47-106 (161)
40 1id0_A PHOQ histidine kinase; 98.0 1.3E-05 4.4E-10 73.8 9.2 58 42-99 45-103 (152)
41 3jz3_A Sensor protein QSEC; he 97.9 9.2E-06 3.1E-10 79.3 6.2 54 42-98 118-173 (222)
42 1r62_A Nitrogen regulation pro 97.9 1.5E-05 5E-10 73.8 6.6 57 42-98 49-119 (160)
43 1i58_A Chemotaxis protein CHEA 97.9 2.5E-05 8.4E-10 75.1 8.3 76 42-124 48-162 (189)
44 2c2a_A Sensor histidine kinase 97.9 5.7E-05 2E-09 76.0 11.1 59 41-99 138-202 (258)
45 3d36_A Sporulation kinase B; G 97.8 7.3E-05 2.5E-09 73.9 10.4 58 41-98 123-183 (244)
46 1ysr_A Sensor-type histidine k 97.8 8.7E-05 3E-09 68.2 10.2 58 41-98 46-105 (150)
47 3a0y_A Sensor protein; ATP-LID 97.8 2.4E-05 8.3E-10 71.7 6.0 58 41-98 47-107 (152)
48 4ew8_A Sensor protein DIVL; si 97.8 6.4E-05 2.2E-09 75.8 9.4 57 42-98 156-215 (268)
49 3sl2_A Sensor histidine kinase 97.7 0.00012 4E-09 69.5 9.8 77 42-124 44-125 (177)
50 3ehg_A Sensor kinase (YOCF pro 97.7 7.4E-05 2.5E-09 67.3 7.9 46 42-87 41-88 (128)
51 1b3q_A Protein (chemotaxis pro 97.7 5.2E-05 1.8E-09 82.0 7.6 86 41-133 106-235 (379)
52 2q8g_A [pyruvate dehydrogenase 97.7 8.4E-05 2.9E-09 80.9 9.0 60 41-100 243-312 (407)
53 2e0a_A Pyruvate dehydrogenase 97.7 0.0001 3.4E-09 79.9 9.3 59 41-99 230-298 (394)
54 1gkz_A [3-methyl-2-oxobutanoat 97.7 7.3E-05 2.5E-09 80.7 8.2 59 41-99 238-307 (388)
55 3zxo_A Redox sensor histidine 97.6 0.00027 9.1E-09 63.2 9.7 46 41-86 43-89 (129)
56 1y8o_A [pyruvate dehydrogenase 97.6 0.00011 3.8E-09 80.3 8.1 58 42-99 254-322 (419)
57 3a0r_A Sensor protein; four he 97.6 7.3E-05 2.5E-09 78.1 6.4 58 41-98 244-304 (349)
58 2btz_A Pyruvate dehydrogenase 97.5 0.00016 5.5E-09 78.2 8.1 59 41-99 231-299 (394)
59 3ehh_A Sensor kinase (YOCF pro 97.4 0.00028 9.6E-09 68.8 8.2 46 42-87 131-178 (218)
60 3zxq_A Hypoxia sensor histidin 97.3 0.00063 2.2E-08 60.3 8.3 45 41-86 39-85 (124)
61 4fpp_A Phosphotransferase; fou 96.6 0.0043 1.5E-07 62.4 7.9 58 42-99 147-209 (247)
62 3ke6_A Protein RV1364C/MT1410; 93.8 0.13 4.5E-06 55.5 8.6 48 38-85 294-348 (399)
63 1ixm_A SPO0B, protein (sporula 91.1 0.16 5.3E-06 49.5 4.2 47 47-93 111-168 (192)
64 2e5n_A RNA polymerase II elong 36.1 16 0.00054 31.5 2.0 32 598-629 29-60 (100)
65 3hqc_A Tensin-like C1 domain-c 27.9 22 0.00076 33.2 1.7 46 43-98 36-81 (157)
66 3rgh_A Filamin-A; cell adhesio 26.5 45 0.0015 28.2 3.3 29 53-81 33-63 (100)
67 2w0p_A Filamin-A; alternative 26.2 61 0.0021 26.9 4.1 30 53-82 28-57 (94)
68 2doa_A RNA polymerase II elong 25.6 24 0.00083 30.6 1.4 31 599-629 29-59 (104)
69 2bp3_A Filamin A; structural p 22.1 66 0.0023 26.8 3.5 30 53-82 31-60 (97)
70 2ee6_A Filamin-B; beta-sandwic 21.9 58 0.002 27.7 3.1 30 53-82 36-65 (105)
No 1
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.4e-83 Score=684.81 Aligned_cols=343 Identities=53% Similarity=0.884 Sum_probs=284.6
Q ss_pred CcccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCCCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 19 PPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 19 ~~~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
+++|++||++++++|+|||||.+|.+||+|||+||+||+|+.|.|.++.+|...|+|.|||+||++++++.+|+||+|||
T Consensus 6 ~~~I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK 85 (348)
T 3na3_A 6 AGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSK 85 (348)
T ss_dssp CCCCCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTCCSS
T ss_pred ccccccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEEeCCEEEEEEEECCcCcChHHhhhhhccccccc
Confidence 35699999999999999999999999999999999999999999999988877899999999999999999999999999
Q ss_pred cccccccccccccCccchhhhhhhcceEEEEEEEeCCCcceEEEEEeCCeeccccccccCCCceEEEEEeeeccchhhhh
Q 005789 99 LSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRK 178 (677)
Q Consensus 99 ~~~~~dl~~i~t~GfRGeALaSIs~vs~v~I~Tr~~~~~~~~~~~~~~g~~~~~~~~~~~~~GTtV~v~dLF~n~PvRrk 178 (677)
+.+++|+..+.|+|||||||+||++||+|+|+||++++..||++.|++|++....++++.++||+|+|+|||||+|+|+|
T Consensus 86 ~~~~~dl~~i~s~GfrGeaL~Si~avs~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~~~~~GTtV~v~~LF~n~P~R~k 165 (348)
T 3na3_A 86 LQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRK 165 (348)
T ss_dssp CCCC---------CCTTCHHHHHHHSSEEEEEEECTTCSSEEEEEEETTEESSCCEEECCCSEEEEEEESTTTTCHHHHH
T ss_pred cCcchhhhccccCCcCChHHHHhhcccEEEEEEEECCCCceEEEEEeCCEEeeeeeEecCCCCcEEEECcccccCchhhh
Confidence 99999999999999999999999999999999999999999999999999874456778899999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCeeeEEEEeCCCCCHHHHHHHHhChhhhccceEecccccCCCCCcce
Q 005789 179 TLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVF 258 (677)
Q Consensus 179 ~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~~~~~l~t~~~~s~~~~i~~i~G~~~~~~L~~i~~~~~~~~~~~~~ 258 (677)
+|++.+.|+.+|.++|++||++||+|+|+|.++|+....+++.+++++.+++.++||..++++|++++.+. +. .++
T Consensus 166 ~lk~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~v~~~~--~~--~~~ 241 (348)
T 3na3_A 166 ALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCED--KT--LAF 241 (348)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCSSCSEECCTTCCHHHHHHHHHCHHHHTTEEEEEEEE--GG--GTE
T ss_pred hccccHHHHHHHHHHHHHHHhhCCCeEEEEEECCEEEEEeecCCCCCHHHHHHHHhChHhHhhcEEEEeec--CC--ccE
Confidence 99999999999999999999999999999999997666689999999999999999999999999998875 21 369
Q ss_pred EEEEEEeCCCCCCCCceEEEEEcCeecCChhHHHHHHHHHhhcCCCCCCceEEEEEEcCCCccccccCCCCCeEecCChh
Q 005789 259 KMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQE 338 (677)
Q Consensus 259 ~v~G~is~~~~~~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~ 338 (677)
+++||||.|+++.++..||+|||||+|.++.|.+||+++|+.++|+++||+++|+|+|||+.|||||||+|+||+|.+|+
T Consensus 242 ~i~G~is~p~~~~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~l~~~~~P~~~L~l~~~p~~vDVNvhP~K~eV~f~~e~ 321 (348)
T 3na3_A 242 KMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEE 321 (348)
T ss_dssp EEEEEEECSSCCBSSCEEEEEETTEECCCTTHHHHHHHHHHTTSCTTCBCEEEEEEECC---------------------
T ss_pred EEEEEEeCCccCCCcccEEEEECCeEecCHHHHHHHHHHHHHhCcCCCceEEEEEEEeChhheeeeeCCCcCEEEEcCHH
Confidence 99999999998877889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCccccccc
Q 005789 339 LIVEKIQSAVELKLRQSNDSRTYKEQT 365 (677)
Q Consensus 339 ~I~~~I~~~l~~~L~~~~~~r~~~~q~ 365 (677)
+|++.|+++|+++|...+++|+|.+|+
T Consensus 322 ~i~~~i~~~v~~~l~~~~~sr~f~~~~ 348 (348)
T 3na3_A 322 SILERVQQHIESKLLGSNSSRMYFTQT 348 (348)
T ss_dssp -CTHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHhcCCCcceeeccC
Confidence 999999999999999999999998764
No 2
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-78 Score=650.23 Aligned_cols=335 Identities=29% Similarity=0.483 Sum_probs=289.5
Q ss_pred CcccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCCCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 19 PPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 19 ~~~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
|++|++||++++++|+|||||.+|.+||+|||+||+||||+.|.|.+..+|...|+|.|||+||++++++.+|++|+|||
T Consensus 3 M~~I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 82 (367)
T 3h4l_A 3 MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTSK 82 (367)
T ss_dssp ----------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC--
T ss_pred CCcceeCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCCEEEEEEEeCCEEEEEEEECCCCcChhHhccceeccccCc
Confidence 77899999999999999999999999999999999999999999999888877899999999999999999999999999
Q ss_pred cccccccccccccCccchhhhhhhcceEEEEEEEeCCCcceEEEEEe-CCeeccccccccCCCceEEEEEeeeccchhhh
Q 005789 99 LSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYR-DGVMESEPKACAAVKGTQIMVENLFYNMIARR 177 (677)
Q Consensus 99 ~~~~~dl~~i~t~GfRGeALaSIs~vs~v~I~Tr~~~~~~~~~~~~~-~g~~~~~~~~~~~~~GTtV~v~dLF~n~PvRr 177 (677)
+.+++|+..+.|+|||||||+||++||+|+|+||+++ ..||++.|+ +|++.. ..+++.++||+|+|+|||||+|+|+
T Consensus 83 ~~~~~Dl~~i~t~GfrGeaL~Si~avS~l~V~sr~~~-~~~~~~~~~~~G~~~~-~~~~~~~~GTtV~v~~LF~n~P~R~ 160 (367)
T 3h4l_A 83 IAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSP-PKADKLEYDMVGHITS-KTTTSRNKGTTVLVSQLFHNLPVRQ 160 (367)
T ss_dssp -------CCCCEEEETTHHHHHHHHSSEEEEEEESST-TCEEEEEECTTCCEEE-EEEECCSSEEEEEEESTTTTCHHHH
T ss_pred CCchhhhhhhhccCccchHHHHhhccCEEEEEEEECC-CCEEEEEEcCCCcEEe-eccccCCCCeEEEEchhhccCchhh
Confidence 9999999999999999999999999999999999998 789999997 788763 4577889999999999999999999
Q ss_pred h-cccCCchhHHHHHHHHHHHHhcCCCeEEEEEEC---CeeeEEEEeCCCCCHHHHHHHHhChhhhccceEecccc----
Q 005789 178 K-TLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKH---GAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASE---- 249 (677)
Q Consensus 178 k-~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~---g~~~~~l~t~~~~s~~~~i~~i~G~~~~~~L~~i~~~~---- 249 (677)
| ++++.+.|+.+|.++|++||++||+|+|+|.++ ++.+..++|++++++.+++.++||..++++|++++...
T Consensus 161 k~flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~~~t~~~~~~~~~i~~i~G~~~~~~l~~v~~~~~~~~ 240 (367)
T 3h4l_A 161 KEFSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNP 240 (367)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCSSCCHHHHHHHHHCTTTTTTEEEEEEEEECGG
T ss_pred hhhccchHHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCcceEEEECCCCCCHHHHHHHHhCHHHHhccEEEeccccccc
Confidence 9 889989999999999999999999999999973 45678899999999999999999999999999988710
Q ss_pred -----------cC--CCCCcceEEEEEEeCCCCC---CCCceEEEEEcCeecCChhHHHHHHHHHhhcCCCCCCceEEEE
Q 005789 250 -----------YN--DSSSFVFKMDGYVSNSNYV---AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMS 313 (677)
Q Consensus 250 -----------~~--~~~~~~~~v~G~is~~~~~---~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~ 313 (677)
.+ +....+++++||||.|.+. +++..||+|||||+|.++.|.++|+++|+.++ .++|||++|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~~-~~~~P~~~L~ 319 (367)
T 3h4l_A 241 FKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNEVYKTFN-NVQFPAVFLN 319 (367)
T ss_dssp GCCCCC------------CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECCHHHHHHHHHHHHTTC-SSCBCCEEEE
T ss_pred ccccccccccccccccccCCcEEEEEEEeCCcccccCCCCCcEEEEECCCEecCHHHHHHHHHHHHhcC-CCCCcEEEEE
Confidence 00 0011679999999998753 34678999999999999999999999999986 5899999999
Q ss_pred EEcCCCccccccCCCCCeEecCChhHHHHHHHHHHHHHHhcCC
Q 005789 314 IVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSN 356 (677)
Q Consensus 314 i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~l~~~L~~~~ 356 (677)
|+|||+.|||||||+|+||+|.+|+.|++.|+++|.++|..++
T Consensus 320 l~~~p~~vDVNVhP~K~eV~f~~e~~i~~~i~~~l~~~~~~~~ 362 (367)
T 3h4l_A 320 LELPMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDYYNRQE 362 (367)
T ss_dssp EECCGGGEECCCSSSTTCCEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcChHHcceeECCCCCEEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999997653
No 3
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=100.00 E-value=2.7e-72 Score=607.29 Aligned_cols=334 Identities=29% Similarity=0.473 Sum_probs=273.2
Q ss_pred CCcccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCCCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCC
Q 005789 18 EPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (677)
Q Consensus 18 ~~~~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (677)
+|++|++||++++++|+|||||.+|.++|+|||+||+||||+.|.|.+..+|...|+|.|||+||+++|++.+|.+|+||
T Consensus 11 ~~~~I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l~~~f~~~~ts 90 (365)
T 1h7s_A 11 PAKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTS 90 (365)
T ss_dssp ------------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGSGGGGC-----
T ss_pred cchhhccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCCEEEEEEEeCCcEEEEEEECCCCcCHHHHHHHhhhcccc
Confidence 35679999999999999999999999999999999999999999999987776789999999999999999999999999
Q ss_pred CcccccccccccccCccchhhhhhhcceEEEEEEEeCCCcceEEEEEe-CCeeccccccccCCCceEEEEEeeeccchhh
Q 005789 98 KLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYR-DGVMESEPKACAAVKGTQIMVENLFYNMIAR 176 (677)
Q Consensus 98 K~~~~~dl~~i~t~GfRGeALaSIs~vs~v~I~Tr~~~~~~~~~~~~~-~g~~~~~~~~~~~~~GTtV~v~dLF~n~PvR 176 (677)
|+.+++|+..+.++||||+||+||+++|+|+|+||+.++..+|++.++ +|++.. ..+++.++||+|+|+|||+|+|+|
T Consensus 91 K~~~~~dl~~i~s~G~rG~gl~si~~vs~v~v~t~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~GT~V~v~~LF~n~P~R 169 (365)
T 1h7s_A 91 KIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQ-KTPYPRPRGTTVSVQQLFSTLPVR 169 (365)
T ss_dssp -----CCTTCSEEESSSSSHHHHHHHHSEEEEEEECTTCSSCEEEEECTTSCEEE-EEECCCCSEEEEEEESTTTTSHHH
T ss_pred ccccccchhcccccCCCCchhhhhhhhccEEEEEccCCCcceEEEEEcCCCceEe-ecccCCCCCcEEEEeecccccchh
Confidence 999989999999999999999999999999999999998889999997 788763 456777899999999999999999
Q ss_pred hh-cccCCchhHHHHHHHHHHHHhcCCCeEEEEEECC---eeeEEEEeCCCCCHHHHHHHHhChhhhccceEeccccc--
Q 005789 177 RK-TLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG---AARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEY-- 250 (677)
Q Consensus 177 rk-~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g---~~~~~l~t~~~~s~~~~i~~i~G~~~~~~L~~i~~~~~-- 250 (677)
+| ++++...|+.+|.+++++||++||+|+|+|.+++ ..+..+++++++++.+++.++||..++++|+++.....
T Consensus 170 ~k~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~i~~~~~~~ 249 (365)
T 1h7s_A 170 HKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSD 249 (365)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCCCSSHHHHHHHHHCHHHHHTEEECCCCCCCH
T ss_pred hhhhccchHHHHHHHHHhhhhhhhcCCceEEEEEecCCCCcEEEEEEcCCCchHHHHHHHhcChHhHhceEEEeccCCcc
Confidence 99 7788889999999999999999999999999865 34678999999999999999999999999999854320
Q ss_pred ----------CCCCCcceEEEEEEeCCCCC---CCCceEEEEEcCeecCChhHHHHHHHHHhhcCCCCCCceEEEEEEcC
Q 005789 251 ----------NDSSSFVFKMDGYVSNSNYV---AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLP 317 (677)
Q Consensus 251 ----------~~~~~~~~~v~G~is~~~~~---~~k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~ 317 (677)
.+....+++++||++.|.+. +++..||+|||||+|.++.|.++|+++|+.++++ +||+++|+|+||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~v~G~i~~p~~~~~r~~~~~q~~fvNgR~v~~~~l~~ai~~~y~~~~~~-~~P~~~L~l~~~ 328 (365)
T 1h7s_A 250 SVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMYNRH-QYPFVVLNISVD 328 (365)
T ss_dssp HHHHHHTCCTTTTTSCCCEEEEEEECCSTTTSBSSSTTEEEEETTEEECCHHHHHHHHHHHHTTCTT-CBCCEEEEEECC
T ss_pred cccccccccccccccccEEEEEEEeCcccccccCCCcceEEEECCeEecCHHHHHHHHHHHHhhCcc-CCcEEEEEEEeC
Confidence 00011569999999999875 3467899999999999999999999999999987 899999999999
Q ss_pred CCccccccCCCCCeEecCChhHHHHHHHHHHHHHHh
Q 005789 318 PEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 353 (677)
Q Consensus 318 p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~l~~~L~ 353 (677)
|..|||||||+|+||+|.+|+.|++.|+++|+++|.
T Consensus 329 p~~vDvNVhP~K~eV~f~~e~~i~~~i~~~~~~~~~ 364 (365)
T 1h7s_A 329 SECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFD 364 (365)
T ss_dssp GGGEEEC------CEEETTHHHHHHHHHHHHHHHHC
T ss_pred hHHcceEECCCcCEEEEcCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999884
No 4
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=100.00 E-value=7e-71 Score=590.83 Aligned_cols=326 Identities=32% Similarity=0.501 Sum_probs=300.2
Q ss_pred CCcccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCCCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCC
Q 005789 18 EPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (677)
Q Consensus 18 ~~~~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (677)
.|+ |++||++++++|+|||||.+|.++|+|||+||+||||+.|.|.+..+|...|+|.|||+||+++|++.+|.||+||
T Consensus 2 ~m~-I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 80 (333)
T 1b63_A 2 HMP-IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATS 80 (333)
T ss_dssp CSC-CCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCS
T ss_pred CCc-ceECCHHHHHHHhcCCchhCHHHHHHHHHHHHHHCCCCeEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhccccc
Confidence 354 9999999999999999999999999999999999999999999998887789999999999999999999999999
Q ss_pred CcccccccccccccCccchhhhhhhcceEEEEEEEeCCCcceEEEEEeCCeeccccccccCCCceEEEEEeeeccchhhh
Q 005789 98 KLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARR 177 (677)
Q Consensus 98 K~~~~~dl~~i~t~GfRGeALaSIs~vs~v~I~Tr~~~~~~~~~~~~~~g~~~~~~~~~~~~~GTtV~v~dLF~n~PvRr 177 (677)
|+.+++|+..+.++||||+||+|++++|+|+|+||+.++..+|++..+++.......+++.++||+|+|+|||+|+|+|+
T Consensus 81 K~~~~~d~~~~~~~G~~G~gl~si~~vs~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~GT~V~v~~Lf~n~P~r~ 160 (333)
T 1b63_A 81 KIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARR 160 (333)
T ss_dssp SCCSHHHHHTCCSSCCSSCHHHHHHTTSEEEEEEECTTCSSEEEEEEETTTTEEEEEEECCCSEEEEEEESTTTTCHHHH
T ss_pred CccccchhhhccccCccccchhhhhcCCcEEEEEecCCCceEEEEEEcCCcceEeeecccCCCCCEEEEecccccchhhh
Confidence 99988899999999999999999999999999999999888999865655422134556778999999999999999999
Q ss_pred hcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCeeeEEEEeCC---CCCHHHHHHHHhChhhhccceEecccccCCCC
Q 005789 178 KTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIA---TSSRLDSIRTVYGVSVASNLVQLEASEYNDSS 254 (677)
Q Consensus 178 k~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~~~~~l~t~~---~~s~~~~i~~i~G~~~~~~L~~i~~~~~~~~~ 254 (677)
+++++...|+.+|.+++++||++||+|+|+|..+|+ ..+.+.+ .+++.+++..+||..++.++++++.+.
T Consensus 161 kflk~~~~e~~~i~~~~~~~al~~p~v~~~l~~ng~--~~~~~~~~~~~~~~~~~i~~i~G~~~~~~li~i~~~~----- 233 (333)
T 1b63_A 161 KFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGK--IVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQH----- 233 (333)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTE--EEEEECCCCTTCCTHHHHHHHHCHHHHHHEEEEEEEE-----
T ss_pred hhhccHHHHHHHHHHHHHHHhccCCCcEEEEEECCE--EEEecCCCCCCchHHHHHHHHhChhhHhheEEEEecC-----
Confidence 999988899999999999999999999999999984 4555544 457899999999999999999999876
Q ss_pred CcceEEEEEEeCCCCCC-C-CceEEEEEcCeecCChhHHHHHHHHHhhcCCCCCCceEEEEEEcCCCccccccCCCCCeE
Q 005789 255 SFVFKMDGYVSNSNYVA-K-KTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREV 332 (677)
Q Consensus 255 ~~~~~v~G~is~~~~~~-~-k~~q~ifIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNVhPtK~eV 332 (677)
.+++++||++.|...+ + +..||+|||||+|.++.|.++|+++|+.++++++||+++|+|+|||+.|||||||+|+||
T Consensus 234 -~~~~v~G~i~~p~~~~~~~~~~~~~fvNgR~V~~~~l~~ai~~~y~~~l~~~~~P~~~l~l~~~p~~vDvNvhP~K~ev 312 (333)
T 1b63_A 234 -GDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEV 312 (333)
T ss_dssp -TTEEEEEEEECGGGCCTTGGGCEEEEETTEECCCHHHHHHHHHHHHHHSSSCCCCCEEEEEECCGGGEECTTSTTCCCC
T ss_pred -CCEEEEEEEEcCccccCCCCCcEEEEECCEEecCHHHHHHHHHHHHhhccCCCCcEEEEEEEeCchhccceECCCcCEE
Confidence 7899999999998654 3 578999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCChhHHHHHHHHHHHHHH
Q 005789 333 SLLNQELIVEKIQSAVELKL 352 (677)
Q Consensus 333 ~F~~e~~I~~~I~~~l~~~L 352 (677)
+|.+|+.|++.|+++|+++|
T Consensus 313 ~f~~~~~v~~~i~~~i~~~l 332 (333)
T 1b63_A 313 RFHQSRLVHDFIYQGVLSVL 332 (333)
T ss_dssp EETTHHHHHHHHHHHHHHHT
T ss_pred EeCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999987
No 5
>3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens}
Probab=100.00 E-value=5.6e-51 Score=418.61 Aligned_cols=193 Identities=39% Similarity=0.742 Sum_probs=185.4
Q ss_pred ccccccchHHHHHHhhhhcCCcccccccccEEEEEEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHhcCcCeEecCC
Q 005789 442 ETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFAHFNAIQLSD 521 (677)
Q Consensus 442 ~~~~l~Sv~~L~~~v~~~~~~~l~~~~~~~~~VG~vd~~yiLiQ~~~~LyLIDqhaahEei~YQ~~l~~fgn~~~q~L~~ 521 (677)
+.++|+||++|+++|.++.|.+|+++|++|+|||+||.+++|+||+++|||||+.++++|+|||++|.+||||+.++|++
T Consensus 32 r~~~LtSV~~Lr~ev~~~~h~~Ltei~~~~tfVG~VD~~~aLiQ~~tkLYLvd~~~l~~ElFYQ~~L~~FgNfg~i~L~~ 111 (284)
T 3rbn_A 32 RIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSE 111 (284)
T ss_dssp SCCCCHHHHHHHHHHHHHBCHHHHHHHHTCEEEEESSSSEEEEEETTEEEEEEHHHHHHHHHHHHHHHSTTCCEEEEEEE
T ss_pred eEEechhHHHHHHHHHHhcCHHHHHHHHhCeEEEEECCCeeEEEeCCeEEEecHHHHHHHHHHHHHHHHhcCCCeEeeCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcChhHHHhhhccccccccccCcCchhHHHHHHHHHHHHHHHHHHHhhhcceEEeeCCCeeccCcccCCCCCCCCCHHHH
Q 005789 522 PAPLSELLMLALKEEDLDVENSENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGNLSRLPIILDQYTPDMDRIPEF 601 (677)
Q Consensus 522 P~~l~~Ll~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~emL~eYFgi~Ie~~G~L~siP~lL~~y~P~~~~Lp~f 601 (677)
|++|.+|+.+|++.++ ++|+++|++++++++.++++|.++++||.|||||+|+++|+|.+||++|++|.|++++||.|
T Consensus 112 P~~L~dLl~~al~~~~--~~~~e~d~~~~~~~e~i~~~L~~~~eML~EYFsi~Id~~g~L~slPlLl~~Y~P~l~~LP~F 189 (284)
T 3rbn_A 112 PAPLFDLAMLALDSPE--SGWTEEDGPKEGLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLIDNYVPPLEGLPIF 189 (284)
T ss_dssp EEEHHHHHHHHHTSGG--GTCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHCCEECTTSEEEEEEECSTTCCCCGGGHHHH
T ss_pred CCCHHHHHHHHhhccc--ccCCcccccHHHHHHHHHHHHHHHHHHHHhheeEEEeCCCcEEEechhhcCCCCChHHHHHH
Confidence 9999999999997653 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhccccCCCCC
Q 005789 602 VLCLGNDVDWEDEKCCFQAIAAALGNFYAMHPPLL 636 (677)
Q Consensus 602 l~~La~~v~w~~E~~cf~~i~r~lA~fys~~~~~~ 636 (677)
|+|||++|||++|++||++|||+||.||+..|.+.
T Consensus 190 llrL~t~VdW~~Ek~Cf~~i~relA~FY~~~~~~~ 224 (284)
T 3rbn_A 190 ILRLATEVNWDEEKECFESLSKECAMFYSIRKQYI 224 (284)
T ss_dssp HHHHHHTSCCSSHHHHHHHHHHHHHHHHSCCGGGC
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCCccCC
Confidence 99999999999999999999999999996554443
No 6
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=6.6e-32 Score=293.85 Aligned_cols=308 Identities=14% Similarity=0.122 Sum_probs=231.3
Q ss_pred cccccCChHHHHHHhcCCcccCH--HHHHHHHHHhhhhC---C-CCceEEEEeeCCeeEEEEEeCCCCCCccc-------
Q 005789 20 PKIHRLEESVVNRIAAGEVIQRP--VSAVKELVENSLDA---D-ATSINVVVKDGGLKLIQVSDDGHGIRYED------- 86 (677)
Q Consensus 20 ~~I~~L~~~v~~kIaAgevI~~p--~~~vkELveNSiDA---g-At~I~V~i~~~g~~~i~V~DNG~GI~~~d------- 86 (677)
..|+.|..--.-|.+.|.+|.+. .++|+|||+||||| | |+.|.|.|..+| .|+|.|||+||+.++
T Consensus 8 ~~i~~L~gle~vr~RPgmYiGs~~~~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g--~I~V~DnG~GIp~~~~~~~~~~ 85 (390)
T 1s16_A 8 DAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ--SLEVIDDGRGMPVDIHPEEGVP 85 (390)
T ss_dssp GGCEECCTTHHHHHCGGGTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCTTTCSB
T ss_pred HHcEEcchhHHHhhCCceeecCCcHHHHHHHHHHHHHHHHhcCCCCEEEEEEecCC--EEEEEECCCCcCcccccccCcc
Confidence 35999999999999999999755 99999999999999 5 999999999888 699999999999999
Q ss_pred -Hhhhhhc-ccCCCcccccccccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCeecccccccc--C--C
Q 005789 87 -LPILCER-HTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPKACA--A--V 159 (677)
Q Consensus 87 -l~~~~~r-~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~~~~~~~~~~--~--~ 159 (677)
++.++.+ |+|||+.+ |.+.+ |.||||+||++++++| +++|+|+..+ .+|++.|.+|.+.....+.+ . +
T Consensus 86 ~~e~v~~~lhagsKf~~--~~~~~-sgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~~~~~g~~~~~~ 160 (390)
T 1s16_A 86 AVELILCRLHAGGKFSN--KNYQF-SGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGTCGKRN 160 (390)
T ss_dssp HHHHHHHCTTEESCSSS--SSCSS-CSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEECCTTC
T ss_pred hhhheeeeecccCCcCC--Ccccc-cCCccccchHHHHHhhcccEEEEEECC--cEEEEEEeCCcccccceecccccCCC
Confidence 7887766 99999864 55555 9999999999999999 6999999755 68999999998753222222 2 7
Q ss_pred CceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCe-eeEEEEeCCCCCHHHHHHHHhChh-
Q 005789 160 KGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA-ARADVHSIATSSRLDSIRTVYGVS- 237 (677)
Q Consensus 160 ~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~-~~~~l~t~~~~s~~~~i~~i~G~~- 237 (677)
+||+|+++ |.|++| ++...++..|.+.++++|+.||+|+|+|.+.+. .+..|+.++ .+.+.+..++|..
T Consensus 161 ~GT~V~f~------Pd~~~F-~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~g--Gl~~~v~~l~~~~~ 231 (390)
T 1s16_A 161 TGTSVHFW------PDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD--GLNDYLAEAVNGLP 231 (390)
T ss_dssp CEEEEEEE------ECGGGS-SCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEECCSS--CHHHHHHHHHTTSC
T ss_pred CceEEEEE------ECcccc-CcccccHHHHHHHHHHHHhcCCCcEEEEEeCCCceeEEEEcCC--cHHHHHHHHhCCCc
Confidence 89999987 999998 777789999999999999999999999998763 235677765 3999999999863
Q ss_pred -hhccceEecccccCCCCCcceEEEEEEeCCCCCCCCceEEEEEcCeecCCh-----hHHHHHHHHHhhcC-----CCC-
Q 005789 238 -VASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECA-----PLKRAVEIVYAATF-----PKA- 305 (677)
Q Consensus 238 -~~~~L~~i~~~~~~~~~~~~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~~-----~l~kaI~~~y~~~l-----p~~- 305 (677)
+..+++.++.+. .++.++|+++.|+- +.+..|+.|||||++... .++.++.++...|. .+.
T Consensus 232 ~~~~~~i~~~~~~------~~~~ve~a~~~~~~-~~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~~~k~~ 304 (390)
T 1s16_A 232 TLPEKPFIGNFAG------DTEAVDWALLWLPE-GGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRG 304 (390)
T ss_dssp CEEEEEEEEEEEC------SSEEEEEEEEECTT-CCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSCTT
T ss_pred ccCCCcEEEEEee------CCEEEEEEEEeccC-CCCceEEEEECCEecCCCCCHHHHHHHHHHHHHHHHHHHhCcCccC
Confidence 344566666654 67899999987521 224579999999999862 34444444333332 121
Q ss_pred ---------CCceEEEEEEcCCCccccccCCCCCeEecCChhH-HHHHHHHHHHHHHh
Q 005789 306 ---------SKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQEL-IVEKIQSAVELKLR 353 (677)
Q Consensus 306 ---------~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~-I~~~I~~~l~~~L~ 353 (677)
..=+++|++.+|.-..+ -.||...-=..-.. +-..+.+.+..+|.
T Consensus 305 ~~l~~~dvregl~avisvki~~P~Fe---gQTK~kL~~~e~~~~v~~~v~~~l~~~l~ 359 (390)
T 1s16_A 305 VKLSAEDIWDRCAYVLSVKMQDPQFA---GQTKERLSSRQCAAFVSGVVKDAFILWLN 359 (390)
T ss_dssp CCCCHHHHHTTEEEEEEEEESSCCBS---STTCCCBCCTHHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHhhccEEEEEeecCCCCcc---ccccchhcChhHHHHHHHHHHHHHHHHHH
Confidence 12268899988854443 35664422111111 22344455555553
No 7
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=99.98 E-value=7.7e-31 Score=283.33 Aligned_cols=294 Identities=13% Similarity=0.073 Sum_probs=227.5
Q ss_pred HHHhcCCccc-----CHHHHHHHHHHhhhhC----CCCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCCCccc
Q 005789 31 NRIAAGEVIQ-----RPVSAVKELVENSLDA----DATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSK 101 (677)
Q Consensus 31 ~kIaAgevI~-----~p~~~vkELveNSiDA----gAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~ 101 (677)
-|.+.|.+|- .|+++|+|||+||||| +|+.|.|+|..+| +|+|.|||+||+. +.++.+|+|||+.+
T Consensus 15 vrkRPgmYiGs~~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g--~I~V~DnGrGIp~---e~v~~lhagsKf~~ 89 (369)
T 3cwv_A 15 VRKRPGMYCGDVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDG--SIALFCTSRTVTA---ENLVRVATGAGFLG 89 (369)
T ss_dssp HHHSTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEEEESSCCH---HHHHHHHTTTTGGG
T ss_pred HHhCCceEEcCCCCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCC--EEEEEECCCCcCH---hHeeeeecCCCcCC
Confidence 3455666663 6899999999999998 8999999999888 6999999999999 44559999999976
Q ss_pred ccccccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCee------ccccccc--cCCCceEEEEEeeecc
Q 005789 102 YEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM------ESEPKAC--AAVKGTQIMVENLFYN 172 (677)
Q Consensus 102 ~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~~------~~~~~~~--~~~~GTtV~v~dLF~n 172 (677)
.+ ...+|+++| +|++++++| +++|+|++.+ .+|++.|++|.+ ....++. ..++||+|+++
T Consensus 90 ~~---~~~~y~vsG-Gls~vnalSs~l~v~t~r~g--~~~~~~~~~G~~~~~~~~~~~l~~~g~~~~~GT~V~f~----- 158 (369)
T 3cwv_A 90 RP---PGDGWGWDS-MLVVSLALSSRYQVDIWADG--RQWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFV----- 158 (369)
T ss_dssp SS---CCCSTTTTS-SHHHHHHTEEEEEEEEEETT--EEEEEEEETTEECTTCEEESSCCCCSSCCSEEEEEEEE-----
T ss_pred Cc---ccccccccC-HHHHHHHhhceEEEEEEECC--CEEEEEEeCCcccccccccCCceEecccCCCCCEEEEE-----
Confidence 54 014567777 899999997 7999999865 489999999987 4322322 26899999997
Q ss_pred chhhhhcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCe-eeEEEEeCCCCCHHHHHHHHhChh--hhccceEecccc
Q 005789 173 MIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA-ARADVHSIATSSRLDSIRTVYGVS--VASNLVQLEASE 249 (677)
Q Consensus 173 ~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~-~~~~l~t~~~~s~~~~i~~i~G~~--~~~~L~~i~~~~ 249 (677)
|+|++| ++...++..|.+.++++|+.||+|+|+|.+++. .+..|.+++ + +.+.+..++|.+ +..+++.++.+.
T Consensus 159 -Pd~~~F-~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~g-G-l~~~v~~l~~~~~~~~~~~i~~~~~~ 234 (369)
T 3cwv_A 159 -PDATIF-EVLAFDRARLSRRCNELAALAPGLRVSFADLQRGERTLWHLPG-G-VAQWAHVLTEARPQLHPEPVVFDFTW 234 (369)
T ss_dssp -ECTTTC-SCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEEECTT-H-HHHHHHHHHTTSCBSSSSCEEEEEEE
T ss_pred -ECHHHh-CCccccHHHHHHHHHHHcCcCCCcEEEEEeCCCCeeEEEEeCc-h-HHHHHHHHhcCCcccCCCcEEEEEec
Confidence 999998 888889999999999999999999999998762 245677776 3 999999999976 555677777655
Q ss_pred cCCCCCcceEEEEEEeCCCCCCCCceEEEEEcCeecCC-----hhHHHHHHHHHhhcCCCC----------CCceEEEEE
Q 005789 250 YNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC-----APLKRAVEIVYAATFPKA----------SKPFIYMSI 314 (677)
Q Consensus 250 ~~~~~~~~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~-----~~l~kaI~~~y~~~lp~~----------~~P~~~L~i 314 (677)
.++.++|+++.+. +.+..|+.|||||++.. ..++.||.++|..++.+. ..=.+++++
T Consensus 235 ------~~i~ve~a~~~~~--~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~k~~~~~l~~~dvregl~avisv 306 (369)
T 3cwv_A 235 ------DGLRVQCALQWCE--DEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSGETRGAFPWARVAQGLTAIVAV 306 (369)
T ss_dssp ------TTEEEEEEEEEBS--SSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTEEEEEEE
T ss_pred ------CCEEEEEEEEecC--CCCeeEEEEECCEEeCCCCCHHHHHHHHHHHHHHHHHhhcCCCcCHHHHhhccEEEEEe
Confidence 6799999998763 22567899999999998 889999999999988321 122688999
Q ss_pred EcCCCc--cccccCCCCCeEecCChhH-HHHHHHHHHHHHHhcC
Q 005789 315 VLPPEH--VDVNVHPTKREVSLLNQEL-IVEKIQSAVELKLRQS 355 (677)
Q Consensus 315 ~i~p~~--vDVNVhPtK~eV~F~~e~~-I~~~I~~~l~~~L~~~ 355 (677)
.++.-. .+ -.||...-=..-.. +-..+.+.+..+|...
T Consensus 307 k~~~P~~~Fe---gQTK~kL~~~e~~~~v~~~v~~~l~~~l~~n 347 (369)
T 3cwv_A 307 SGPRRQMAFA---GPTKELLAIPGLEEAIRKQLQPLFIELLREH 347 (369)
T ss_dssp ECCGGGCCBS---STTCCSBCCTTHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCcchhcc---ccccchhcCHHHHHHHHHHHHHHHHHHHHHC
Confidence 987433 32 46675543332223 3366666677776543
No 8
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.97 E-value=3.6e-31 Score=287.96 Aligned_cols=278 Identities=16% Similarity=0.187 Sum_probs=219.2
Q ss_pred ccccCChHHHHHHhcCCccc------CHHHHHHHHHHhhhhC---C-CCceEEEEeeCCeeEEEEEeCCCCCCccc----
Q 005789 21 KIHRLEESVVNRIAAGEVIQ------RPVSAVKELVENSLDA---D-ATSINVVVKDGGLKLIQVSDDGHGIRYED---- 86 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~------~p~~~vkELveNSiDA---g-At~I~V~i~~~g~~~i~V~DNG~GI~~~d---- 86 (677)
.|+.|..--.-|.+.|.+|. .|.++|+|||+||+|| | |+.|.|.|+.+| .|+|.|||+||+.++
T Consensus 8 ~i~~L~gle~vrkRPgmYiGst~~~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g--~I~V~DnG~GIp~~~~~~~ 85 (391)
T 1ei1_A 8 SIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN--SVSVQDDGRGIPTGIHPEE 85 (391)
T ss_dssp GCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS--CEEEEECSSCCCCSBCTTT
T ss_pred HCEECchhHHHHcCCCeEECCCCCCcCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCC--EEEEEECCCCcccCccccc
Confidence 59999999999999999994 7899999999999999 6 999999999888 699999999999999
Q ss_pred ----Hhhhh-hcccCCCcccccccccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCeeccccc--cccC
Q 005789 87 ----LPILC-ERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK--ACAA 158 (677)
Q Consensus 87 ----l~~~~-~r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~~~~~~~--~~~~ 158 (677)
+++++ .+|+|||+.+ |.+.+ |.||||+||++++++| +++|+|+..+ .+|++.|.+|.+..... ....
T Consensus 86 ~~~~~elv~~~lhagsKf~~--~~~~v-SgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~l~~~~~~~ 160 (391)
T 1ei1_A 86 GVSAAEVIMTVLHAGGKFDD--NSYKV-SGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTGETE 160 (391)
T ss_dssp SSBHHHHHHHSTTEESCSSS--SSCSS-CSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSCCEEEEECS
T ss_pred CcchHHHhheeccccCCcCC--Ccccc-cCCccccchHHHHHhcCeEEEEEEeCC--cEEEEEEcCCcccccceeccCcC
Confidence 55565 4999999864 45555 9999999999999999 6999999765 68999999998763221 2235
Q ss_pred CCceEEEEEeeeccchhhhhcccC-CchhHHHHHHHHHHHHhcCCCeEEEEEECCe-eeEEEEeCCCCCHHHHHHHHhCh
Q 005789 159 VKGTQIMVENLFYNMIARRKTLQN-SSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA-ARADVHSIATSSRLDSIRTVYGV 236 (677)
Q Consensus 159 ~~GTtV~v~dLF~n~PvRrk~l~~-~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~-~~~~l~t~~~~s~~~~i~~i~G~ 236 (677)
++||+|+++ |.|++| ++ ...++..|.+.++++|+.||+|+|+|.+.+. .+..|+.++ + +.+.+..+++.
T Consensus 161 ~~GT~V~f~------Pd~~~F-~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~~~~~f~~~g-G-l~~~v~~l~~~ 231 (391)
T 1ei1_A 161 KTGTMVRFW------PSLETF-TNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEG-G-IKAFVEYLNKN 231 (391)
T ss_dssp CCEEEEEEE------ECTTTC-CSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEECCCS-H-HHHHHHHHHHT
T ss_pred CCccEEEEE------EChhhh-CCccccCHHHHHHHHHHhcccCCCcEEEEEcCCCcceEEEEcCc-h-HHHHHHHHcCC
Confidence 899999987 999998 77 7789999999999999999999999998763 235677766 3 88999999886
Q ss_pred h--hhccceEecccccCCCCCcceEEEEEEeCCCCCCCCceEEEEEcCeecCCh---------hHHHHHHHHHhh--cCC
Q 005789 237 S--VASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECA---------PLKRAVEIVYAA--TFP 303 (677)
Q Consensus 237 ~--~~~~L~~i~~~~~~~~~~~~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~~---------~l~kaI~~~y~~--~lp 303 (677)
. +..+++.++.+. .++.++++++-+. +.+..|+.|||||++... .|.++|++..+. ++.
T Consensus 232 ~~~~~~~~i~~~~~~------~~i~veva~~~~~--~~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~l~k 303 (391)
T 1ei1_A 232 KTPIHPNIFYFSTEK------DGIGVEVALQWND--GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSK 303 (391)
T ss_dssp SCBSSSCCEEEEEEE------TTEEEEEEEEEBS--SCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred CcccccccEEEEEec------CCEEEEEEEEccC--CCCeeEEEEEcceecCCCCcHHHHHHHHHHHHHHHHHHHhCccc
Confidence 5 445677776655 5789999998653 224568999999999864 344455443331 111
Q ss_pred C----------CCCceEEEEEEcCCCccc
Q 005789 304 K----------ASKPFIYMSIVLPPEHVD 322 (677)
Q Consensus 304 ~----------~~~P~~~L~i~i~p~~vD 322 (677)
+ ...=++++++.+|.-..+
T Consensus 304 ~~~~~~~~~dvregl~avisvki~~P~Fe 332 (391)
T 1ei1_A 304 KAKVSATGDDAREGLIAVVSVKVPDPKFS 332 (391)
T ss_dssp HHCCCCCHHHHTTTEEEEEEEECSSCCBS
T ss_pred ccCCccCHHHHhhccEEEEEEecCCCCcC
Confidence 1 123367888888754443
No 9
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.97 E-value=1.5e-31 Score=266.29 Aligned_cols=167 Identities=20% Similarity=0.364 Sum_probs=125.5
Q ss_pred HHhcCCcccC--HHHHHHHHHHhhhhC---C-CCceEEEEeeCCeeEEEEEeCCCCCCccc--------Hhh-hhhcccC
Q 005789 32 RIAAGEVIQR--PVSAVKELVENSLDA---D-ATSINVVVKDGGLKLIQVSDDGHGIRYED--------LPI-LCERHTT 96 (677)
Q Consensus 32 kIaAgevI~~--p~~~vkELveNSiDA---g-At~I~V~i~~~g~~~i~V~DNG~GI~~~d--------l~~-~~~r~~T 96 (677)
|.+.|.+|.+ |+++|+|||+||+|| | |+.|.|.++.+| .|+|.|||+||+.++ +++ ++.+|+|
T Consensus 6 r~rpgmyig~~~~~~~v~Elv~NsiDa~~~g~a~~I~V~i~~~g--~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hat 83 (201)
T 3fv5_A 6 RRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 83 (201)
T ss_dssp HHCGGGTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC---
T ss_pred ccCCccEECCCChhhhhHHHHHHHHHHHhcCCCcEEEEEEeCCC--EEEEEECCCCcCcccccccCcchhheeeeeeccc
Confidence 3456777754 699999999999999 6 999999999877 699999999999999 456 6899999
Q ss_pred CCcccccccccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCeeccccc---ccc-CCCceEEEEEeeec
Q 005789 97 SKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK---ACA-AVKGTQIMVENLFY 171 (677)
Q Consensus 97 SK~~~~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~~~~~~~---~~~-~~~GTtV~v~dLF~ 171 (677)
||+.+ |+..+ |+|||||||+||+++| +++|+|++.+ .+|++.|++|++..... +++ .+.||+|++
T Consensus 84 sK~~~--~~~~~-s~GfrGeglssinalS~~l~v~t~~~g--~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f----- 153 (201)
T 3fv5_A 84 GKFSN--KNYQF-SGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHF----- 153 (201)
T ss_dssp ---------------------CHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEECCTTCCEEEEEE-----
T ss_pred cCcCC--Ccccc-cCcccceecchhhcccceEEEEEEecC--ceEEEEEeCCEEcccceecccCCCCCCCeEEEE-----
Confidence 99875 66665 8999999999999999 7999999865 47999999998753222 221 579999999
Q ss_pred cchhhhhcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECC
Q 005789 172 NMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (677)
Q Consensus 172 n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g 212 (677)
.|+|++| ++...++..|.+.+++||++||+|+|+|.+..
T Consensus 154 -~Pdr~~F-~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r 192 (201)
T 3fv5_A 154 -WPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI 192 (201)
T ss_dssp -EECGGGS-SCCCCCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred -EECHHHc-CCCccCHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 4999888 88889999999999999999999999999864
No 10
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.95 E-value=3.3e-28 Score=274.08 Aligned_cols=290 Identities=16% Similarity=0.200 Sum_probs=208.4
Q ss_pred cccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCC----------------CC--ceEEEEeeCCeeEEEEEeCCCCCC
Q 005789 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAD----------------AT--SINVVVKDGGLKLIQVSDDGHGIR 83 (677)
Q Consensus 22 I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAg----------------At--~I~V~i~~~g~~~i~V~DNG~GI~ 83 (677)
|++|-+-+++.+ ..+|..+|+|||+||+||+ |+ .|.|.++.++ ..|+|.|||+||+
T Consensus 13 i~~Ll~ll~~~l-----Ysn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~I~I~DnGiGMt 86 (559)
T 1y4s_A 13 VKQLLHLMIHSL-----YSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK-RTLTISDNGVGMT 86 (559)
T ss_dssp HHHHHHHHHHHT-----GGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT-TEEEEEECSSCCC
T ss_pred HHHHHHHHHHhc-----CCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCC-cEEEEEECCCCCC
Confidence 555555555544 4678999999999999998 54 7777777666 4799999999999
Q ss_pred cccHhhhhhcccCCCcccc-cc-----cccccccCccchhhhhhhcce-EEEEEEEeCC--CcceEEEEEeCCeeccccc
Q 005789 84 YEDLPILCERHTTSKLSKY-ED-----LQSIKSMGFRGEALASMTYVG-HVTVTTITKG--HLHGYRVSYRDGVMESEPK 154 (677)
Q Consensus 84 ~~dl~~~~~r~~TSK~~~~-~d-----l~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~--~~~~~~~~~~~g~~~~~~~ 154 (677)
++|+...+.+++||+...| +. ...+.+.||+|+|+.|+..|| +|+|+||+.+ ...||.+...+|... ...
T Consensus 87 ~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~-~i~ 165 (559)
T 1y4s_A 87 RDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVA 165 (559)
T ss_dssp HHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEE-EEE
T ss_pred HHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCee-EEe
Confidence 9999999999999986554 11 235679999999999999997 6999999988 367999888765432 122
Q ss_pred cc-cCCCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHH--hcCCCeEEE--------------EEECCeeeEE
Q 005789 155 AC-AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMA--IHHTNVSFS--------------CRKHGAARAD 217 (677)
Q Consensus 155 ~~-~~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yA--l~~p~v~F~--------------l~~~g~~~~~ 217 (677)
++ ...+||+|+++ | + +.+..++ +..+|.++|.+|| +.+| |.|. +.+++ +..
T Consensus 166 ~~~~~~~GT~I~L~-L--k-~d~~Efl-----e~~~I~~iv~kys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~--~~l 233 (559)
T 1y4s_A 166 DITKEDRGTEITLH-L--R-EGEDEFL-----DDWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKA--QAL 233 (559)
T ss_dssp EECCCSCEEEEEEE-E--C-TTCGGGS-----CHHHHHHHHHHHHTTCSSC-EEEEEEECSTTSCEEEEEECCCC--CCG
T ss_pred ECCCCCCCeEEEEE-E--c-chhhhcc-----hHHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCC--ccc
Confidence 33 56899999997 2 1 2233333 2679999999999 8899 9993 33333 556
Q ss_pred EEeCCCCCHHHHHHHHhC---hhhhccceEecccccCCCCCcceEEEEEEeCCC------CC-CCCceEEEEEcCeecCC
Q 005789 218 VHSIATSSRLDSIRTVYG---VSVASNLVQLEASEYNDSSSFVFKMDGYVSNSN------YV-AKKTTMVLFVNDRLVEC 287 (677)
Q Consensus 218 l~t~~~~s~~~~i~~i~G---~~~~~~L~~i~~~~~~~~~~~~~~v~G~is~~~------~~-~~k~~q~ifIN~R~V~~ 287 (677)
|.+++..-..+.+...|+ ......|..++++. + +.+.++|++..|. +. .++..+.+|||||+|..
T Consensus 234 w~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~--e---g~~~~~gll~~P~~~p~~~~~r~~~~~i~lyvn~v~I~d 308 (559)
T 1y4s_A 234 WTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRV--E---GKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMD 308 (559)
T ss_dssp GGSCGGGCCHHHHHHHHHHHHTCSSCEEEEEEECC--C---SSSCEEEEEEEESSCCTTCSSSSCCCCEEEEETTEEEEE
T ss_pred eecCcccccHHHHHHHHHhhhhhhhcCeEEEEecc--C---CceEEEEEEEcCCcCcchhhhhcccCCeEEEEcCEEeec
Confidence 666554333446677776 24455677777765 1 3589999998776 22 23677899999999987
Q ss_pred hhHHHHHHHHHhhcCCCCCCceEEEEEEcCCCccccccCCCCCeEecCChhHHHHHHHHHHHHHH
Q 005789 288 APLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 352 (677)
Q Consensus 288 ~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~l~~~L 352 (677)
.. ..++|.. +.++...++++.+|+||. ||. +.++.++..|++.+.+.+
T Consensus 309 ~~---------~~llP~~---l~fv~gvVDs~dlplNVS---RE~--lq~~~~l~~I~~~l~kkv 356 (559)
T 1y4s_A 309 DA---------EQFMPNY---LRFVRGLIDSSDLPLNVS---REI--LQDSTVTRNLRNALTKRV 356 (559)
T ss_dssp EE---------GGGSCGG---GTTCEEEEEESSSCTTCC---TTG--GGGCHHHHHHHHHHHHHH
T ss_pred ch---------hhhChHh---HhheeEeeChhhCCCeeC---chh--hhhhHHHHHHHHHHHHHH
Confidence 63 6777751 123555699999999995 443 666777777776665543
No 11
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.95 E-value=2.4e-28 Score=278.34 Aligned_cols=290 Identities=15% Similarity=0.183 Sum_probs=203.3
Q ss_pred ccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCC----------------CC--ceEEEEeeCCeeEEEEEeCCCCC
Q 005789 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAD----------------AT--SINVVVKDGGLKLIQVSDDGHGI 82 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAg----------------At--~I~V~i~~~g~~~i~V~DNG~GI 82 (677)
.|++|-+-+++.+- .++..+|+|||+||+||+ |+ .|.|.++.++ ..|+|.|||+||
T Consensus 12 ei~~Ll~ll~~~lY-----sn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~-~~I~I~DnGiGM 85 (624)
T 2ioq_A 12 EVKQLLHLMIHSLY-----SNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK-RTLTISDNGVGM 85 (624)
T ss_dssp ---CCHHHHHHHHS-----SCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTT-TEEEEEECSCCC
T ss_pred cHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCC-cEEEEEECCCCC
Confidence 36677776666655 468999999999999998 64 6777777666 579999999999
Q ss_pred CcccHhhhhhcccCCCcccc----c--ccccccccCccchhhhhhhcce-EEEEEEEeCC--CcceEEEEEeCCeecccc
Q 005789 83 RYEDLPILCERHTTSKLSKY----E--DLQSIKSMGFRGEALASMTYVG-HVTVTTITKG--HLHGYRVSYRDGVMESEP 153 (677)
Q Consensus 83 ~~~dl~~~~~r~~TSK~~~~----~--dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~--~~~~~~~~~~~g~~~~~~ 153 (677)
+++|+...+.+++||+...| . +...+.+.||+|+|+.|+..|| +|+|+||+.+ ...||++...+|... ..
T Consensus 86 t~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~-~i 164 (624)
T 2ioq_A 86 TRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TV 164 (624)
T ss_dssp CHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCC-EE
T ss_pred CHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCeE-EE
Confidence 99999999999999986544 1 1345789999999999999999 7999999988 577999988765432 12
Q ss_pred ccc-cCCCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHH--hcCCCeEE--------------EEEECCeeeE
Q 005789 154 KAC-AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMA--IHHTNVSF--------------SCRKHGAARA 216 (677)
Q Consensus 154 ~~~-~~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yA--l~~p~v~F--------------~l~~~g~~~~ 216 (677)
.++ ...+||+|+++ |- +.+..++ +..+|.++|.+|| +.+| |.| .+.+++ +.
T Consensus 165 ~~~~~~~~GT~I~L~-Lk---~d~~Efl-----~~~~i~~ivkkys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~--~~ 232 (624)
T 2ioq_A 165 ADITKEDRGTEITLH-LR---EGEDEFL-----DDWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKA--QA 232 (624)
T ss_dssp EEECCSSSEEEEEEE-EC---TTCGGGG-----CHHHHHHHHHHHHTTCSSC-EEEEEEEECSSCEEEEEEECCCC--SC
T ss_pred EECCCCCCCeEEEEE-Ec---chhhhcc-----hHHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCC--cc
Confidence 233 56899999997 21 1222222 2678999999999 8899 988 333333 55
Q ss_pred EEEeCCCCCHHHHHHHHhCh---hhhccceEecccccCCCCCcceEEEEEEeCCCC------C-CCCceEEEEEcCeecC
Q 005789 217 DVHSIATSSRLDSIRTVYGV---SVASNLVQLEASEYNDSSSFVFKMDGYVSNSNY------V-AKKTTMVLFVNDRLVE 286 (677)
Q Consensus 217 ~l~t~~~~s~~~~i~~i~G~---~~~~~L~~i~~~~~~~~~~~~~~v~G~is~~~~------~-~~k~~q~ifIN~R~V~ 286 (677)
.|.+++..-..+.+...|+. .....|..++++. + +.+.++|++..|.. . .++..+.+|||||+|.
T Consensus 233 lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~--e---g~~~~~gll~~P~~~p~~~~~r~~~~~i~lyvn~v~I~ 307 (624)
T 2ioq_A 233 LWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRV--E---GKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIM 307 (624)
T ss_dssp TTTSCTTTCCHHHHHHHHHHHHTCCSCCSCCEEEEE--E---SSSCEEEEEECCSSCCGGGSSSSCCCCEEEEESSCEEE
T ss_pred ceEecCccchHHHHHHHHHhhccchhcCeEEEEecc--c---ceEEEEEEEEeCCcCccchhhhcccCCeEEEECCEEee
Confidence 66665543333466666665 4455677776654 1 36899999998862 2 2467789999999998
Q ss_pred ChhHHHHHHHHHhhcCCCCCCceEEEEEEcCCCccccccCCCCCeEecCChhHHHHHHHHHHHHH
Q 005789 287 CAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELK 351 (677)
Q Consensus 287 ~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~l~~~ 351 (677)
... ..++|.. +.++...++++.+|+||. ||. +.++.++..|++.+.+.
T Consensus 308 d~~---------~~llP~~---l~fv~gvVDs~dl~lNVS---RE~--LQ~~~~l~~I~~~l~kk 355 (624)
T 2ioq_A 308 DDA---------EQFMPNY---LRFVRGLIDSSDLPLNVS---REI--LQDSTVTRNLRNALTKR 355 (624)
T ss_dssp EEE---------CSSSCTT---STTCEEEEEESSSCTTCC---HHH--HHHSSHHHHHHHHHHHH
T ss_pred cch---------hccchhh---hhhEEEEECHhhCCCccC---chh--hhhhHHHHHHHHHHHHH
Confidence 765 6777762 224555699999999994 543 45555666666555443
No 12
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.94 E-value=1.6e-26 Score=251.80 Aligned_cols=257 Identities=15% Similarity=0.168 Sum_probs=205.4
Q ss_pred ccccCChHHHHHHhcCCcc-----cCHHHHHHHHHHhhhhCC----CCceEEEEeeCCeeEEEEEeCCCCCCcccHhh--
Q 005789 21 KIHRLEESVVNRIAAGEVI-----QRPVSAVKELVENSLDAD----ATSINVVVKDGGLKLIQVSDDGHGIRYEDLPI-- 89 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI-----~~p~~~vkELveNSiDAg----At~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~-- 89 (677)
.|+.|..--.-+.+.|.+| ..+.++|+|||+||+|+. ++.|.|.+..+| .|+|.|||+||+.++++.
T Consensus 7 ~i~~l~~le~vr~rpgmyiGs~~~~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~~~--~i~V~DnG~GIp~~~~~~~~ 84 (390)
T 1kij_A 7 AIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDG--SLTVEDNGRGIPVDLMPEEG 84 (390)
T ss_dssp CCEECCTTHHHHHCTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS--CEEEEECSSCCCCSEETTTT
T ss_pred HCEEcchhHHHhcCCCcEEccCCcchHHHHHHHHHHHHHHHhhhCCCCEEEEEEEcCC--EEEEEEcCCCCCHHHhhhcc
Confidence 5999999999999999999 567899999999999986 999999998877 699999999999999865
Q ss_pred ------hhh-cccCCCcccccccccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCeecccccccc----
Q 005789 90 ------LCE-RHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPKACA---- 157 (677)
Q Consensus 90 ------~~~-r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~~~~~~~~~~---- 157 (677)
+|. .|++||+.+ +... .+.|++|++|+++.++| .++|+|+..+ .+|++.|.+|.......+.+
T Consensus 85 ~~~~e~if~~~~~~~kf~~--~~~~-~s~G~~G~Gls~v~als~~~~v~t~~~g--~~~~~~~~~G~~~~~~~~~~~~~~ 159 (390)
T 1kij_A 85 KPAVEVIYNTLHSGGKFEQ--GAYK-VSGGLHGVGASVVNALSEWTVVEVFREG--KHHRIAFSRGEVTEPLRVVGEAPR 159 (390)
T ss_dssp EEHHHHHHHSSCEESGGGG--SSCC-CCSCSSTTSHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEECGG
T ss_pred ccchhhheeeeeecccccC--cccc-ccCCCCCcceeeecccccceEEEEecCC--cEEEEEEcCCcccccceeeccccC
Confidence 664 688898642 2223 37899999999999999 5999999755 58999999998653222222
Q ss_pred CCCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCee-eEEEEeCCCCCHHHHHHHHhCh
Q 005789 158 AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAA-RADVHSIATSSRLDSIRTVYGV 236 (677)
Q Consensus 158 ~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~~-~~~l~t~~~~s~~~~i~~i~G~ 236 (677)
.++||+|+++ |.|++| ++...++..|.+.++++|+.||+|+|+|.+.+.. +..|+.++ .+.+.+..++|.
T Consensus 160 ~~~GT~V~f~------Pd~~~F-~~~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~~~~~~~f~~~~--Gl~~~v~~l~~~ 230 (390)
T 1kij_A 160 GKTGTRVTFK------PDPEIF-GNLRFDPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDKG--GVASFAKALAEG 230 (390)
T ss_dssp GCCEEEEEEE------ECHHHH-TTCCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGTEEEEECCTT--HHHHHHHHHTTT
T ss_pred CCCCcEEEEE------EChHHh-CCccccHHHHHHHHHHhcCcCCCcEEEEEeCCCcceEEEEcCC--cHHHHHHHHhCC
Confidence 5799999996 999887 7777789999999999999999999999987532 35677765 389999999987
Q ss_pred h--hhccceEecccccCCCCCcceEEEEEEeCCCCCCCCceEEEEEcCeecCC-----hhHHHHHHHHHhhc
Q 005789 237 S--VASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC-----APLKRAVEIVYAAT 301 (677)
Q Consensus 237 ~--~~~~L~~i~~~~~~~~~~~~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~-----~~l~kaI~~~y~~~ 301 (677)
. +...++.++.+. .++.++++++-.. +.+..|+.|||||++.. ..++.++.++...|
T Consensus 231 ~~~~~~~~i~~~~~~------~~i~ve~a~~~~~--~~~~~~~sFvN~i~t~~GGTH~~g~~~alt~~i~~~ 294 (390)
T 1kij_A 231 EDLLYEKPFLIRGTH------GEVEVEVGFLHTQ--GYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQY 294 (390)
T ss_dssp SCBSCSSCEEEEEEE------TTEEEEEEEEEBS--SSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCcEEEEeec------CCeEEEEEEEecC--CCCceEEEEEcCeeeCCCCchhHHHHHHHHHHHHHH
Confidence 6 455677776655 5789999998632 22467999999999986 34555555554444
No 13
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.93 E-value=1.3e-26 Score=264.88 Aligned_cols=286 Identities=15% Similarity=0.207 Sum_probs=185.4
Q ss_pred ccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCC----------------CC--ceEEEEeeCCeeEEEEEeCCCCC
Q 005789 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAD----------------AT--SINVVVKDGGLKLIQVSDDGHGI 82 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAg----------------At--~I~V~i~~~g~~~i~V~DNG~GI 82 (677)
.|++|-+-+++. ...++..+|+|||+||+||+ |+ .|.|.++.++ ..|+|+|||+||
T Consensus 30 ei~~Ll~li~~s-----LYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~-~~I~I~DnGiGM 103 (666)
T 2o1u_A 30 EVNRMMKLIINS-----LYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK-NLLHVTDTGVGM 103 (666)
T ss_dssp ----CCSSSTTT-----TSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTT-TEEEEEECSCCC
T ss_pred hHHHHHHHHHHh-----ccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCC-CEEEEEECCCCC
Confidence 466776665554 44578899999999999998 64 5667666666 469999999999
Q ss_pred CcccHhhhhhcccCC-------Ccccc-----cccccccccCccchhhhhhhcceEEEEEEEeCCCcceEEEEEeCCeec
Q 005789 83 RYEDLPILCERHTTS-------KLSKY-----EDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVME 150 (677)
Q Consensus 83 ~~~dl~~~~~r~~TS-------K~~~~-----~dl~~i~t~GfRGeALaSIs~vs~v~I~Tr~~~~~~~~~~~~~~g~~~ 150 (677)
+++|+...+.++++| |+... .|+..++.||+++.+++++| .+|+|+||+.++ .||.+...+|...
T Consensus 104 t~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vA--dkV~V~Sr~~~~-~~~~W~s~gg~~t 180 (666)
T 2o1u_A 104 TREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA--DKVIVTSKHNND-TQHIWESDSNEFS 180 (666)
T ss_dssp CHHHHHHHTTC-------------------------------CTTGGGGGTE--EEEEEEEECTTS-CCEEEEESSSCCE
T ss_pred CHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhc--CEEEEEEeeCCC-ceEEEEEeCCeEE
Confidence 999999999999999 66653 57778888888887776665 689999999875 5888887776653
Q ss_pred ccccc--ccCCCceEEEEEeeeccchhhhhcccCCchh---HHHHHHHHHHHH--hcCCCeEEEEE-------------E
Q 005789 151 SEPKA--CAAVKGTQIMVENLFYNMIARRKTLQNSSDD---YTKIVDLLSRMA--IHHTNVSFSCR-------------K 210 (677)
Q Consensus 151 ~~~~~--~~~~~GTtV~v~dLF~n~PvRrk~l~~~~~e---~~~i~~~v~~yA--l~~p~v~F~l~-------------~ 210 (677)
..+.. ...++||+|++. |+....| ..+|.++|.+|| +.+| |.|... .
T Consensus 181 i~~~~~~~~~~~GT~I~L~------------Lk~d~~Efle~~~I~~ivkkys~fi~~P-I~~~~~~~~~~~~~~~~~~~ 247 (666)
T 2o1u_A 181 VIADPRGNTLGRGTTITLV------------LKEEASDYLELDTIKNLVKKYSQFINFP-IYVWSSKTGGGGKTVWDWEL 247 (666)
T ss_dssp EEECTTCCSSSSEEEEEEE------------ECTTTTTSSSTTHHHHHHHHHSTTCCSC-EEEEECC-------CCEEEE
T ss_pred EEecccCCCCCCCeEEEEE------------EccchhhhccHHHHHHHHHHHHhhCCCc-eEEeccccccccccccceEE
Confidence 22211 235899999996 3333333 679999999999 8899 888331 1
Q ss_pred CCeeeEEEEeCCCCCHHHHHHHHhC---hhhhccceEecccccCCCCCcceEEEEEEeCCC------CCC----CCceEE
Q 005789 211 HGAARADVHSIATSSRLDSIRTVYG---VSVASNLVQLEASEYNDSSSFVFKMDGYVSNSN------YVA----KKTTMV 277 (677)
Q Consensus 211 ~g~~~~~l~t~~~~s~~~~i~~i~G---~~~~~~L~~i~~~~~~~~~~~~~~v~G~is~~~------~~~----~k~~q~ 277 (677)
.++.+..|..++..-..+.+...|+ ......|..++++. + +.+.++|++..|. +.. ++..+.
T Consensus 248 iN~~~~lw~~~~~~i~~eey~~fy~~~~~d~~~pl~~ih~~~--e---g~~~~~gll~iP~~~p~d~~~~~~~~~~~~i~ 322 (666)
T 2o1u_A 248 MNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTA--E---GEVTFKSILFVPTSAPRGLFDEYGSKKSDYIK 322 (666)
T ss_dssp CSCCSCTTTSCTTTCCHHHHHHHHHHTTCTTSCCSEEEEEEE--C---SSSCEEEEEEECSSCCC------------CEE
T ss_pred EecCccccccCcccccHHHHHHHHhhhccccccCeeEEEecc--c---CcEEEEEEEEcCCCCchhhhhhccccccCCeE
Confidence 1122455555554333447778887 34456677777654 2 5688999998776 332 366789
Q ss_pred EEEcCeecCChhHHHHHHHHHhhcCCCCCCceEEEEEEcCCCccccccCCCCCeEecCChhHHHHHHHHHHHH
Q 005789 278 LFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVEL 350 (677)
Q Consensus 278 ifIN~R~V~~~~l~kaI~~~y~~~lp~~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~l~~ 350 (677)
+|||+|+|.... ..++|. | +.+|...++++.+|+||. ||. +.++.++..|++.+.+
T Consensus 323 LYVn~vfI~d~~---------~~llP~--~-l~FvkGvVDs~dLplNVS---RE~--LQ~~~~l~~I~~~l~k 378 (666)
T 2o1u_A 323 LYVRRVFITDDF---------HDMMPK--Y-LNFVKGVVDSDDLPLNVS---RET--LQQHKLLKVIRKKLVR 378 (666)
T ss_dssp EEETTEEEESCC---------CTTSCG--G-GTTCEEEEEESSSCSSSC---HHH--HHTCHHHHHHHHHHHH
T ss_pred EEEcCeEeeCch---------hhhhHH--H-HHHeeeeeCHhhCCCccc---chh--hccCHHHHHHHHHHHH
Confidence 999999998764 566765 2 334666999999999994 554 4556666666655544
No 14
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=99.92 E-value=9.1e-25 Score=219.80 Aligned_cols=180 Identities=19% Similarity=0.229 Sum_probs=140.9
Q ss_pred cccccCChHHHHHHhcCCcc------cCHHHHHHHHHHhhhhC----CCCceEEEEeeCCeeEEEEEeCCCCCCcccH--
Q 005789 20 PKIHRLEESVVNRIAAGEVI------QRPVSAVKELVENSLDA----DATSINVVVKDGGLKLIQVSDDGHGIRYEDL-- 87 (677)
Q Consensus 20 ~~I~~L~~~v~~kIaAgevI------~~p~~~vkELveNSiDA----gAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl-- 87 (677)
..|+.|..--.-|.+.|.+| ..|.++|+|||+||+|+ +|+.|.|.|+.+| +|+|.|||+||+.++.
T Consensus 8 ~~i~~l~~le~vr~rPgmYiG~~~~~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~g--~i~V~DnGrGIp~~~~~~ 85 (220)
T 4duh_A 8 SSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN--SVSVQDDGRGIPTGIHPE 85 (220)
T ss_dssp -------CHHHHHHSTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTTS--CEEEEECSSCCCCSEETT
T ss_pred hHcEEechhHHHHhCCceEECCCCCcccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--cEEEEECCcCcccccccc
Confidence 35999998888888888887 35799999999999999 8999999999877 5999999999999984
Q ss_pred ------hhh-hhcccCCCcccccccccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCeeccccc--ccc
Q 005789 88 ------PIL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK--ACA 157 (677)
Q Consensus 88 ------~~~-~~r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~~~~~~~--~~~ 157 (677)
+.+ +.+|++||+.+ .....|.||||+|+++++++| +++|++++.+ ..|++.|++|....... +..
T Consensus 86 ~~~~~~e~i~t~lhag~Kfd~---~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g--~~~~~~f~~G~~~~~l~~~g~~ 160 (220)
T 4duh_A 86 EGVSAAEVIMTVLHAGGKFDD---NSYKVSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTGET 160 (220)
T ss_dssp TTEEHHHHHHHSTTCSSCCCT---TC--------CCCHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSSCEEEEEC
T ss_pred cCcchhhheeeecccCCCcCC---CccccccCccceecchhcccccceEEEEEECC--EEEEEEecCCcCcCCceecccc
Confidence 454 48999999753 344579999999999999999 7999999866 56999999998864322 345
Q ss_pred CCCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECC
Q 005789 158 AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (677)
Q Consensus 158 ~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g 212 (677)
..+||+|++. |.+++|.+....++..|.+.++++|..+|+|+|+|.+..
T Consensus 161 ~~~GT~V~F~------Pd~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der 209 (220)
T 4duh_A 161 EKTGTMVRFW------PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR 209 (220)
T ss_dssp SCCEEEEEEE------ECTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred CCCCcEEEEE------ECHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 6899999984 999998766577889999999999999999999998754
No 15
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.92 E-value=9.2e-26 Score=228.23 Aligned_cols=164 Identities=20% Similarity=0.264 Sum_probs=133.8
Q ss_pred ccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCCC----------------ceEEEEe-eCCeeEEEEEeCCCCCC
Q 005789 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADAT----------------SINVVVK-DGGLKLIQVSDDGHGIR 83 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgAt----------------~I~V~i~-~~g~~~i~V~DNG~GI~ 83 (677)
.|++|.+-+++.|.++ +..+|+|||+||+||+|+ .+.|.|. +++...|+|.|||+||+
T Consensus 17 ei~~ll~ll~~~lYs~-----~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs 91 (228)
T 3t0h_A 17 EIAQLMSLIINTFYSN-----KEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMT 91 (228)
T ss_dssp HHHHHHHHHHHSCCSC-----TTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCC
T ss_pred eHHHHHHHHHHhhcCC-----cHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCC
Confidence 3778888888877776 578999999999999975 4555553 34556799999999999
Q ss_pred cccHhhhhhcccCCCcccccc-c---ccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCeec-cccc-cc
Q 005789 84 YEDLPILCERHTTSKLSKYED-L---QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVME-SEPK-AC 156 (677)
Q Consensus 84 ~~dl~~~~~r~~TSK~~~~~d-l---~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~~~-~~~~-~~ 156 (677)
++|+...+.+|+|||...|.| | ..+.++||||+||+|++.|| +|+|+||+.+ ..||++...+|... ..+. +.
T Consensus 92 ~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~-~~~~~w~~~g~~~~~v~~~~~~ 170 (228)
T 3t0h_A 92 KADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSFTVRTDTGE 170 (228)
T ss_dssp HHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTEEEEEECCSS
T ss_pred HHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCC-CCcEEEEEcCCceEEEeecCCC
Confidence 999999999999999887654 4 46889999999999999999 7999999987 46999998876532 1221 23
Q ss_pred cCCCceEEEEEeeeccchhhhhcccCCchhH---HHHHHHHHHHH--hcCC
Q 005789 157 AAVKGTQIMVENLFYNMIARRKTLQNSSDDY---TKIVDLLSRMA--IHHT 202 (677)
Q Consensus 157 ~~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~---~~i~~~v~~yA--l~~p 202 (677)
+.++||+|+|+ ||+.+.|+ .+|.++|++|| |.+|
T Consensus 171 ~~~~GT~I~v~------------Lk~~~~E~~e~~~i~~iv~~~a~~l~~P 209 (228)
T 3t0h_A 171 PMGRGTKVILH------------LKEDQTEYLEERRIKEIVKKHSQFIGYP 209 (228)
T ss_dssp CCSSEEEEEEE------------ECGGGGGGGSHHHHHHHHHHHSTTCSSC
T ss_pred CCCCCcEEEEE------------ECCchhhhhhHHHHHHHHHHHHhhCCCC
Confidence 66899999998 66666676 89999999999 8777
No 16
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.90 E-value=5.3e-25 Score=225.09 Aligned_cols=168 Identities=20% Similarity=0.209 Sum_probs=132.3
Q ss_pred ccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCCC----------------ceEEEEe-eCCeeEEEEEeCCCCCC
Q 005789 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADAT----------------SINVVVK-DGGLKLIQVSDDGHGIR 83 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgAt----------------~I~V~i~-~~g~~~i~V~DNG~GI~ 83 (677)
.|++|.+-+++.|.++. ..+|+|||+||+||+|+ .+.|.|. +++...|+|.|||+||+
T Consensus 45 ei~~Ll~ll~~~lYs~~-----~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~GMt 119 (256)
T 3o0i_A 45 EIAQLMSLIINTFYSNK-----EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMT 119 (256)
T ss_dssp HHHHHHHHHHHSCCSCT-----THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCC
T ss_pred eHHHHHHHHHHhccCCc-----HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCCCcC
Confidence 37788888887777664 78999999999999975 3444443 34456799999999999
Q ss_pred cccHhhhhhcccCCCcccccc-c---ccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCeec-ccc-ccc
Q 005789 84 YEDLPILCERHTTSKLSKYED-L---QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVME-SEP-KAC 156 (677)
Q Consensus 84 ~~dl~~~~~r~~TSK~~~~~d-l---~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~~~-~~~-~~~ 156 (677)
++||...+.+++|||...|.| | ..+.++||||+||+|+..|| +|+|+||+.+ ..||++...+|... ..+ .+.
T Consensus 120 ~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~-~~g~~w~s~gg~~~~v~~~~~~ 198 (256)
T 3o0i_A 120 KADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSFTVRTDTGE 198 (256)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTEEEEEECCSS
T ss_pred HHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCC-CceEEEEEeccceEEEeeCCCC
Confidence 999999999999999887754 5 46899999999999999999 7999999986 56999998766532 122 134
Q ss_pred cCCCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHH--hcCCC
Q 005789 157 AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMA--IHHTN 203 (677)
Q Consensus 157 ~~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yA--l~~p~ 203 (677)
+.++||+|+|+ +|..+....+..+|.++|++|| |.+|-
T Consensus 199 ~~~~GT~I~l~---------LK~~~~e~~e~~~I~~iv~k~s~~l~~PI 238 (256)
T 3o0i_A 199 PMGRGTKVILH---------LKEDQTEYLEERRIKEIVKKHSQFIGYPI 238 (256)
T ss_dssp CCSSEEEEEEE---------ECGGGGGGGCHHHHHHHHHHHCTTCSSCE
T ss_pred CCCCCcEEEEE---------EcCcchhhccHHHHHHHHHHHHhhCCCCe
Confidence 66899999997 3333333344589999999999 88874
No 17
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=99.89 E-value=4.8e-23 Score=207.84 Aligned_cols=179 Identities=21% Similarity=0.251 Sum_probs=140.4
Q ss_pred cccccCChHHHHHHhcCCcccC-----HHHHHHHHHHhhhhC----CCCceEEEEeeCCeeEEEEEeCCCCCCccc----
Q 005789 20 PKIHRLEESVVNRIAAGEVIQR-----PVSAVKELVENSLDA----DATSINVVVKDGGLKLIQVSDDGHGIRYED---- 86 (677)
Q Consensus 20 ~~I~~L~~~v~~kIaAgevI~~-----p~~~vkELveNSiDA----gAt~I~V~i~~~g~~~i~V~DNG~GI~~~d---- 86 (677)
..|+.|..--.-|.+.|.+|-+ +..+|+|+|+||+|+ +|+.|.|.++.+| +|+|.|||.||+.++
T Consensus 14 ~~i~~l~~le~vr~RPgmYiGs~~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g--~i~V~DnG~GIp~~~h~~~ 91 (226)
T 4emv_A 14 DAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDG--SLTVQDHGRGMPTGMHAMG 91 (226)
T ss_dssp ---CCCBCTHHHHHCHHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCGGG
T ss_pred hhcEEcchhHHHhhCCceEEcCCCcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCC--eEEEEEcCCCccccccccC
Confidence 3599999988888888888754 789999999999999 8999999999877 599999999999999
Q ss_pred ---Hhhhh-hcccCCCcccccccccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCC-eeccccc---ccc
Q 005789 87 ---LPILC-ERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDG-VMESEPK---ACA 157 (677)
Q Consensus 87 ---l~~~~-~r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g-~~~~~~~---~~~ 157 (677)
++.++ ..|++||+ +|.....|.||||+|+++++++| +++|++++.+ ..|++.|++| ......+ +++
T Consensus 92 ~~~~e~v~t~lhag~Kf---d~~~yk~SgGlhGvG~svvNALS~~l~v~v~r~g--~~~~q~f~~Gg~~~~~l~~ig~~~ 166 (226)
T 4emv_A 92 IPTVEVIFTILHAGGKF---GQGGYKTSGGLHGVGSSVVNALSSWLEVEITRDG--AVYKQRFENGGKPVTTLKKIGTAL 166 (226)
T ss_dssp CBHHHHHHHCBC-----------------CGGGCCHHHHHHTEEEEEEEEEETT--EEEEEEEETTTEESSCSEEEEECC
T ss_pred ceehheeEEeecccCcc---CccceEeccccccccchhhhhcccceEEEEEeCC--cEEEEEECCCCEEcCCceEecccC
Confidence 77765 79999995 45556789999999999999999 6999999866 5699999988 7753322 232
Q ss_pred -CCCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECC
Q 005789 158 -AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (677)
Q Consensus 158 -~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g 212 (677)
..+||+|++. |.+.+| ++..-++..|.+.++.+|..+|+|+|+|.+..
T Consensus 167 ~~~~GT~V~F~------PD~~iF-~~~~~~~~~l~~rlrelA~ln~gv~i~l~der 215 (226)
T 4emv_A 167 KSKTGTKVTFM------PDATIF-STTDFKYNTISERLNESAFLLKNVTLSLTDKR 215 (226)
T ss_dssp TTCCEEEEEEE------ECTTTC-SCCCCCHHHHHHHHHHHHHHHCSCEEEEEETT
T ss_pred CCCCCeEEEEE------ECHHHc-CCCCcCHHHHHHHHHHHhhcCCCCEEEEEecC
Confidence 5799999985 888887 66677889999999999999999999998753
No 18
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=99.89 E-value=4.5e-23 Score=224.43 Aligned_cols=254 Identities=13% Similarity=0.091 Sum_probs=174.5
Q ss_pred ccccCChHHHHHHhcCCcc---------------------------cCHHHHHHHHHHhhhhCC-----CCceEEEEeeC
Q 005789 21 KIHRLEESVVNRIAAGEVI---------------------------QRPVSAVKELVENSLDAD-----ATSINVVVKDG 68 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI---------------------------~~p~~~vkELveNSiDAg-----At~I~V~i~~~ 68 (677)
.+++|..--.-|.+.|.+| ..+.++|+|||+||+||+ |+.|.|.|..+
T Consensus 5 ~~~~L~glE~VrkRPgmYiGst~~~~~~~~v~~~~~~~~~~~~~~~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~ 84 (400)
T 1zxm_A 5 IYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPE 84 (400)
T ss_dssp HSEECCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT
T ss_pred hheecchHHHHHhCCCcEEccCCccccceeeeccccccccccccccchHHHHHHHHHhhHHhHHhhcCCCceEEEEEECC
Confidence 3666666666666666664 467899999999999998 99999999986
Q ss_pred CeeEEEEEeCCCCCCccc--------Hhhhhh-cccCCCcccccccccccccCccchhhhhhhcce-EEEEEEEeCCCcc
Q 005789 69 GLKLIQVSDDGHGIRYED--------LPILCE-RHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLH 138 (677)
Q Consensus 69 g~~~i~V~DNG~GI~~~d--------l~~~~~-r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~ 138 (677)
+ .+|+|.|||+||+.++ +++++. +|+|||+.+ |.+.+ |.||||+|+++++++| +++|+++...+..
T Consensus 85 ~-~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~--~~ykv-SgGlhGvGlsvVnAlS~~l~v~v~~~~~g~ 160 (400)
T 1zxm_A 85 N-NLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDD--DEKKV-TGGRNGYGAKLCNIFSTKFTVETASREYKK 160 (400)
T ss_dssp T-TEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCG--GGCCC-CSCCSSCHHHHHHHTEEEEEEEEEETTTTE
T ss_pred C-CEEEEEECCCcccCccccccCccchhheeeeecccCCCCC--Ccccc-cCCccccceeeeEEeccceEEEEecCCCCc
Confidence 3 2699999999999998 666664 999999864 56666 9999999999999997 6999999876668
Q ss_pred eEEEEEeCCeeccccc---cccCCCceEEEEEeeeccchhhhhcccCCchhHHH---HHHHHHHHHhcCCCeEEEEEECC
Q 005789 139 GYRVSYRDGVMESEPK---ACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTK---IVDLLSRMAIHHTNVSFSCRKHG 212 (677)
Q Consensus 139 ~~~~~~~~g~~~~~~~---~~~~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~---i~~~v~~yAl~~p~v~F~l~~~g 212 (677)
+|+..|.+|....... ++...+||+|+++ |.|++| +...-.+.. |.+.++++|+.||+|+|+|.+..
T Consensus 161 ~~~~~~~~G~~~~~~~~ig~~~~~~GT~V~F~------Pd~~iF-~~~ef~~~~~~~l~~rlrelA~lnpgv~i~l~der 233 (400)
T 1zxm_A 161 MFKQTWMDNMGRAGEMELKPFNGEDYTCITFQ------PDLSKF-KMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNK 233 (400)
T ss_dssp EEEEEEETTTTEECCCEEEECCSCCEEEEEEE------ECGGGG-TCSSCCHHHHHHHHHHHHHHHHHSSSCEEEETTEE
T ss_pred EEEEEEccCccccCcceeccCCCCCccEEEEE------EChHHh-CceeecHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Confidence 8999999884322222 2235689999987 999888 533222333 88999999999999999996421
Q ss_pred eeeEEEEeCCCCCHHHHHHHHhChhhh--ccceEecccccCCCCCcceEEEEEEeCCCCCCCCceEEEEEcCeecCC---
Q 005789 213 AARADVHSIATSSRLDSIRTVYGVSVA--SNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC--- 287 (677)
Q Consensus 213 ~~~~~l~t~~~~s~~~~i~~i~G~~~~--~~L~~i~~~~~~~~~~~~~~v~G~is~~~~~~~k~~q~ifIN~R~V~~--- 287 (677)
. +.+.+.+-+..+-..... .....+.... +. ..+.+---++... ..++-|+|+-+-..
T Consensus 234 --~------~~~Gi~~yv~~l~~~~~~~~~~~~~~~~~~--~~--~~~eva~~~~~~~-----~~~~sfvN~I~T~~GGT 296 (400)
T 1zxm_A 234 --L------PVKGFRSYVDMYLKDKLDETGNSLKVIHEQ--VN--HRWEVCLTMSEKG-----FQQISFVNSIATSKGGR 296 (400)
T ss_dssp --C------CCCSHHHHHHHHHTTCBCSSSSBCCCEEEE--EE--TTEEEEEEECSSS-----CEEEEEETTEECTTEEH
T ss_pred --C------CCCCHHHHHHHHhcCCCccCCCCcceEEee--cC--cEEEEEEEEcCCC-----ceEEEEeCCccCCCCCc
Confidence 0 124566666655432210 1111111111 00 2233322222111 24789999987654
Q ss_pred --hhHHHHHHHHHhhcC
Q 005789 288 --APLKRAVEIVYAATF 302 (677)
Q Consensus 288 --~~l~kaI~~~y~~~l 302 (677)
..++.++.++...|.
T Consensus 297 H~~gfr~altr~i~~y~ 313 (400)
T 1zxm_A 297 HVDYVADQIVTKLVDVV 313 (400)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 246666666666654
No 19
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.88 E-value=2.1e-23 Score=212.63 Aligned_cols=167 Identities=19% Similarity=0.230 Sum_probs=129.9
Q ss_pred cccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCC----------------CC--ceEEEEeeCCeeEEEEEeCCCC
Q 005789 20 PKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAD----------------AT--SINVVVKDGGLKLIQVSDDGHG 81 (677)
Q Consensus 20 ~~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAg----------------At--~I~V~i~~~g~~~i~V~DNG~G 81 (677)
..|++|++.++++|.+ +|..+|+|||+||+||+ |+ .|.|.++.++. .|+|.|||+|
T Consensus 31 ~~i~~L~~~l~~~lys-----~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~-~i~I~DnG~G 104 (235)
T 2ior_A 31 SEVKQLLHLMIHSLYS-----NKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKR-TLTISDNGVG 104 (235)
T ss_dssp HHHHHHHHHHHHHTGG-----GTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTT-EEEEEECSSC
T ss_pred hhHHHHHHHHHHhhcC-----CHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCce-EEEEEECCCC
Confidence 4589999999999988 68999999999999998 44 45565555554 5999999999
Q ss_pred CCcccHhhhhhcccCCCcccccc-c-----ccccccCccchhhhhhhcce-EEEEEEEeCCC--cceEEEEEeCCee-cc
Q 005789 82 IRYEDLPILCERHTTSKLSKYED-L-----QSIKSMGFRGEALASMTYVG-HVTVTTITKGH--LHGYRVSYRDGVM-ES 151 (677)
Q Consensus 82 I~~~dl~~~~~r~~TSK~~~~~d-l-----~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~--~~~~~~~~~~g~~-~~ 151 (677)
|+++|+..++.+++||+...|.+ + .....+|++|+++.|...++ +|+|+||+.+. ..+|++.+.++.. ..
T Consensus 105 Ms~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~i 184 (235)
T 2ior_A 105 MTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTV 184 (235)
T ss_dssp CCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEEEE
T ss_pred CCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcEEE
Confidence 99999999999999998765522 2 23578999999996665554 79999999987 7899998875532 21
Q ss_pred ccccccCCCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHH--hcCC
Q 005789 152 EPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMA--IHHT 202 (677)
Q Consensus 152 ~~~~~~~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yA--l~~p 202 (677)
.+ .....+||+|+|. | + +.|++++ +..+|.++|++|| |.+|
T Consensus 185 ~~-~~~~~~GT~V~v~-L--k-~~~~~~~-----e~~~i~~lv~~ya~~l~~P 227 (235)
T 2ior_A 185 AD-ITKEDRGTEITLH-L--R-EGEDEFL-----DDWRVRSIISKYSDHIALP 227 (235)
T ss_dssp EE-ECCCSCEEEEEEE-E--C-TTCGGGG-----CHHHHHHHHHHHTTSCCSC
T ss_pred ee-CCCCCCCEEEEEE-E--c-CchhhhC-----CHHHHHHHHHHHhccCCCC
Confidence 11 1356899999996 2 1 3444443 5689999999999 7776
No 20
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=99.87 E-value=2.1e-20 Score=202.94 Aligned_cols=305 Identities=17% Similarity=0.189 Sum_probs=189.7
Q ss_pred cccccCChHHHHHHhcCCcc--cCHHHHHHHHHHhhhhC----CCCceEEEEeeCCeeEEEEEeCCCCCCcccH------
Q 005789 20 PKIHRLEESVVNRIAAGEVI--QRPVSAVKELVENSLDA----DATSINVVVKDGGLKLIQVSDDGHGIRYEDL------ 87 (677)
Q Consensus 20 ~~I~~L~~~v~~kIaAgevI--~~p~~~vkELveNSiDA----gAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl------ 87 (677)
..|+.|..--.-|.+.|.+| +++.++|+|+|+||+|+ +|+.|.|.|..+| +|+|.|||+||+.+..
T Consensus 27 ~~I~vL~glE~VRkRPgMYiGst~~~hlv~EivdNsiDea~ag~~~~I~V~i~~dg--sI~V~DnGrGIPv~~h~~~~~~ 104 (408)
T 3lnu_A 27 ADIEVLSGLDPVKRRPGMYTDTARPNHLAQEVIDNSVDEALAGHAKQIEVTLYKDG--SCEVSDDGRGMPVDIHPEEKIP 104 (408)
T ss_dssp -------CCHHHHHCGGGTSCTTSTHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS--CEEEEECSSCCCCSBCTTTCSB
T ss_pred hHceeccccHHHhcCCccEECCCCcchhhHHHHHHHHHHhhcCCCceEEEEEeCCC--eEEEEEcCCCCCcccccccCCc
Confidence 35999999999999999999 56899999999999998 8999999999887 5999999999999984
Q ss_pred --hhh-hhcccCCCcccccccccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCeeccccc---ccc-CC
Q 005789 88 --PIL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK---ACA-AV 159 (677)
Q Consensus 88 --~~~-~~r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~~~~~~~---~~~-~~ 159 (677)
+.+ +..|++||+. |.....|.||+|++++++.++| +++|++++.+ ..|++.|.+|....... ++. ..
T Consensus 105 ~~e~i~t~lhaggKfd---~~~ykvSgGlhGvG~svVNALS~~l~v~v~rdG--k~~~q~f~~G~~~~~l~~ig~~~~~~ 179 (408)
T 3lnu_A 105 GVELILTRLHAGGKFN---NRNYTFSGGLHGVGVSVVNALSTKVELFIKREG--SEHRMEFRDGNAASKLEVVGTVGKKN 179 (408)
T ss_dssp HHHHHHHCC-----------------------CHHHHHHTEEEEEEEEEETT--EEEEEEEETTEECSCCEEEEECCTTC
T ss_pred chheEEEecccCCCcC---CCceeecCCccccccceehhccCeEEEEEEECC--EEEEEEECCCEECCCceEeccCcCCC
Confidence 454 4899999964 4445579999999999999999 6999999866 46999999998864332 332 57
Q ss_pred CceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECCe-eeEEEEeCCCCCHHHHHHHHhChhh
Q 005789 160 KGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA-ARADVHSIATSSRLDSIRTVYGVSV 238 (677)
Q Consensus 160 ~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g~-~~~~l~t~~~~s~~~~i~~i~G~~~ 238 (677)
.||+|++. |.+..| ++..-++..|.+.++++|..+|+|.|+|.+... ....|... +-+.+-+..+-...
T Consensus 180 ~GT~V~F~------PD~~iF-~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~der~~~~~~f~ye--gGi~~yv~~l~~~k- 249 (408)
T 3lnu_A 180 TGTRLRFW------ADPKYF-DTPKFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYFE--NGLRDYLKGEMAEH- 249 (408)
T ss_dssp CEEEEEEE------ECGGGS-SCSCCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEEECS--SSHHHHHHHHTTTS-
T ss_pred CCcEEEEE------ECHHHh-CCCCcCHHHHHHHHHHHHhhcCCCEEEEEeccCCceeEEEcC--chHHHHHHHHhcCC-
Confidence 99999985 998887 666778899999999999999999999987532 12345443 35677666665432
Q ss_pred hccceE---e-cccccCCCCCcceEEEEEEe-CCCCCCCCceEEEEEcCeecCCh---------hHHHHHHHHHhh--cC
Q 005789 239 ASNLVQ---L-EASEYNDSSSFVFKMDGYVS-NSNYVAKKTTMVLFVNDRLVECA---------PLKRAVEIVYAA--TF 302 (677)
Q Consensus 239 ~~~L~~---i-~~~~~~~~~~~~~~v~G~is-~~~~~~~k~~q~ifIN~R~V~~~---------~l~kaI~~~y~~--~l 302 (677)
.+++ + .... . ....++--+. ...+ ...++-|+|+-+-... .|.++|++..+. .+
T Consensus 250 --~~~~~~~~~~~~~---~--~~~~ve~Al~~~~~~---~e~~~SFvN~I~T~~GGTH~~gfr~altr~in~y~~~~~l~ 319 (408)
T 3lnu_A 250 --EMLPADLFVGSLK---K--DTEIVDWAAGWVPEG---ELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLL 319 (408)
T ss_dssp --CCEEEEEEEEEEE---C--SSCEEEEEEEECSSS---CCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred --CcCCCCCeEeeEe---c--CceeEEEEEEEcCCC---CeEEEEEeCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhCcc
Confidence 1111 1 1111 0 1133333332 1122 2458999999875432 344555443332 22
Q ss_pred CCC---------CCceEEEEEEcCCCccccccCCCCCeEecCCh-hHHHHHHHHHHHHHHhc
Q 005789 303 PKA---------SKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQ-ELIVEKIQSAVELKLRQ 354 (677)
Q Consensus 303 p~~---------~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e-~~I~~~I~~~l~~~L~~ 354 (677)
.++ ..-+++|++.+|--..+ --||...-=..- ..+-..+.+.+..+|..
T Consensus 320 kk~~~l~~~DiregL~aviSvkv~~PqFe---gQTK~kL~n~ev~~~V~~~v~~~l~~~l~e 378 (408)
T 3lnu_A 320 PRGVKLAPEDVWDRVTFVLSLKMTDPQFS---GQTKERLSSRQAAGFIEGAAHDAFSLYLNQ 378 (408)
T ss_dssp CTTCCCCHHHHHTTEEEEEEEECSSCCEE---STTSCEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHhhCeEEEEEEEcCCCccc---CcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 322 22368899999855554 356654432211 22335555566666644
No 21
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=99.87 E-value=5.9e-22 Score=196.42 Aligned_cols=165 Identities=22% Similarity=0.292 Sum_probs=141.7
Q ss_pred ccccCChHHHHHHhcCCccc-----CHHHHHHHHHHhhhh---CC-CCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhh
Q 005789 21 KIHRLEESVVNRIAAGEVIQ-----RPVSAVKELVENSLD---AD-ATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILC 91 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~-----~p~~~vkELveNSiD---Ag-At~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~ 91 (677)
.|+.|..--.-|.+.|.+|. .|.++|+|||+||+| || |+.|.|.+..+| +|+|.|||+||+.+
T Consensus 6 ~i~~l~~le~vr~RPgmYiGs~~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g--~i~V~DnG~Gip~~------ 77 (198)
T 3ttz_A 6 QIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDN--WIKVTDNGRGIPVD------ 77 (198)
T ss_dssp HHHHHHHHHHHHHSHHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGG--EEEEEECSSCCCCS------
T ss_pred HeEEecchHHHhcCCCcEECCCCCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCC--eEEEEECCCCcccc------
Confidence 48888887777888888874 389999999999999 58 999999999887 69999999999986
Q ss_pred hcccCCCcccccccccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCeeccccc--cccCCCceEEEEEe
Q 005789 92 ERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK--ACAAVKGTQIMVEN 168 (677)
Q Consensus 92 ~r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~~~~~~~--~~~~~~GTtV~v~d 168 (677)
+|.|||+...+++.. +++++++| +++|+|++.+ ..|++.|++|....... +....+||+|++.
T Consensus 78 -~h~~~~~~~~e~i~t----------~SvVNALS~~l~v~v~r~g--~~~~~~f~~G~~~~~l~~i~~~~~~GT~V~F~- 143 (198)
T 3ttz_A 78 -IQEKMGRPAVEVILT----------SSVVNALSQDLEVYVHRNE--TIYHQAYKKGVPQFDLKEVGTTDKTGTVIRFK- 143 (198)
T ss_dssp -BCTTTSSBHHHHHHH----------TCHHHHTEEEEEEEEEETT--EEEEEEEETTEESSCCEEEEECSCCEEEEEEE-
T ss_pred -ccCcCCCccccccce----------eEehhhhcCeEEEEEEECC--cEEEEEEeCCEECCCceeccCCCCCCcEEEEE-
Confidence 899999988877632 88888897 7999999876 47999999999864322 3456899999986
Q ss_pred eeccchhhhhcccCCchhHHHHHHHHHHHHhcCCCeEEEEEECC
Q 005789 169 LFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (677)
Q Consensus 169 LF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p~v~F~l~~~g 212 (677)
|.|++|+++...++..|.+.++++|..||+|+|+|.+..
T Consensus 144 -----Pd~~iF~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der 182 (198)
T 3ttz_A 144 -----ADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDER 182 (198)
T ss_dssp -----ECTTTCCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEECS
T ss_pred -----ECHHHhccCCccCHHHHHHHHHHHhhcCCCCEEEEEeec
Confidence 999999888888999999999999999999999998753
No 22
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.83 E-value=5.4e-21 Score=194.81 Aligned_cols=172 Identities=16% Similarity=0.183 Sum_probs=125.1
Q ss_pred cccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCC------------------CceEEEEeeCCeeEEEEEeCCCC
Q 005789 20 PKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADA------------------TSINVVVKDGGLKLIQVSDDGHG 81 (677)
Q Consensus 20 ~~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgA------------------t~I~V~i~~~g~~~i~V~DNG~G 81 (677)
..|++|.+-+++.|.++ |..+|+|||+||+||+| ..|.|.++.++ ..|+|.|||+|
T Consensus 16 ~ei~~L~~ll~~~lys~-----~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~-~~i~I~DnG~G 89 (236)
T 2gqp_A 16 AEVNRMMKLIINSLYKN-----KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK-NLLHVTDTGVG 89 (236)
T ss_dssp HHHHHHHHHHHHHTTTC-----TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT-TEEEEEECSCC
T ss_pred HhHHHHHHHHHHhhcCC-----chHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCC-CEEEEEECCcC
Confidence 35889999999999887 78999999999999987 46777776555 47999999999
Q ss_pred CCcccHhhhhhcccCC-------Ccccc-----cccccccccCccchhhhhhhcceEEEEEEEeCCCcceEEEEEeCCee
Q 005789 82 IRYEDLPILCERHTTS-------KLSKY-----EDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVM 149 (677)
Q Consensus 82 I~~~dl~~~~~r~~TS-------K~~~~-----~dl~~i~t~GfRGeALaSIs~vs~v~I~Tr~~~~~~~~~~~~~~g~~ 149 (677)
|+++||...+.++++| |+... .|+..+..||+++.++++++ .+|+|.||+.++ .||.+...+|..
T Consensus 90 Mt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va--~~v~V~Sr~~~~-~~~~w~~~gg~~ 166 (236)
T 2gqp_A 90 MTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA--DKVIVTSKHNND-TQHIWESDSNEF 166 (236)
T ss_dssp CCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTE--EEEEEEEECTTS-CCEEEEESSSCE
T ss_pred CCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcC--CEEEEEEeCCCC-ceEEEEEeCCEE
Confidence 9999999999999998 55543 57778899999998888876 689999999875 588887776655
Q ss_pred ccccc--cccCCCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhcCC-CeEEEEE
Q 005789 150 ESEPK--ACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHT-NVSFSCR 209 (677)
Q Consensus 150 ~~~~~--~~~~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p-~v~F~l~ 209 (677)
...+. .....+||+|++. |- +.+..++ +..+|.++|++||-+-+ .|.+...
T Consensus 167 ~i~~~~~~~~~~~GT~I~l~-Lk---~~~~~~l-----e~~~i~~lv~~~s~~i~~pI~~~~~ 220 (236)
T 2gqp_A 167 SVIADPRGNTLGRGTTITLV-LK---EEASDYL-----ELDTIKNLVKKYSQFINFPIYVWSS 220 (236)
T ss_dssp EEEECTTCSCSSSEEEEEEE-EC---GGGGGGG-----CHHHHHHHHHHHHTTCSSCEEEEEE
T ss_pred EEEeccCCCCCCCCeEEEEE-EC---CcchhhC-----hHHHHHHHHHHHhhhCCCceEEeee
Confidence 32221 1246799999997 21 1122222 46899999999995532 2444443
No 23
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.81 E-value=1.9e-20 Score=193.47 Aligned_cols=166 Identities=20% Similarity=0.239 Sum_probs=122.5
Q ss_pred cccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCC----------------CceEEEEe-eCCeeEEEEEeCCCCCCc
Q 005789 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADA----------------TSINVVVK-DGGLKLIQVSDDGHGIRY 84 (677)
Q Consensus 22 I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgA----------------t~I~V~i~-~~g~~~i~V~DNG~GI~~ 84 (677)
|++|.+-+++.| ..+|..+|+|||+||+||+| +.|.|.|. +++...|+|.|||+||++
T Consensus 54 i~~Ll~ll~~~l-----ys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs~ 128 (264)
T 1yc1_A 54 IAQLMSLIINTF-----YSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTK 128 (264)
T ss_dssp HHHHHHHHHHCC-----CSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCH
T ss_pred HHHHHHHHHHhc-----cCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCCH
Confidence 666666666654 45899999999999999998 78888875 344557999999999999
Q ss_pred ccHhhhhhcccCCCcccc-ccc---ccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCee-ccccc-ccc
Q 005789 85 EDLPILCERHTTSKLSKY-EDL---QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM-ESEPK-ACA 157 (677)
Q Consensus 85 ~dl~~~~~r~~TSK~~~~-~dl---~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~~-~~~~~-~~~ 157 (677)
+||...+.++++|+...| +++ ......|.+|.++.|...++ +|+|.||+.+. .||.+...+|.. ...+. ...
T Consensus 129 edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~-~~~~w~~~~~~~~~i~~~~~~~ 207 (264)
T 1yc1_A 129 ADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDD-EQYAWESSAGGSFTVRTDTGEP 207 (264)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTS-CCEEEEECSTTEEEEEECCSSC
T ss_pred HHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCC-ceEEEEEcCCceEEEeecCCCC
Confidence 999999999999987653 111 23457788888886666666 69999999874 588888765433 21111 124
Q ss_pred CCCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhcCC
Q 005789 158 AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHT 202 (677)
Q Consensus 158 ~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p 202 (677)
.++||+|+|+ |. +.+++++ +..+|.++|++||.+-|
T Consensus 208 ~~~GT~I~l~-Lk---~~~~e~~-----e~~~i~~lv~k~s~fi~ 243 (264)
T 1yc1_A 208 MGRGTKVILH-LK---EDQTEYL-----EERRIKEIVKKHSQFIG 243 (264)
T ss_dssp CSSEEEEEEE-EC---GGGGGGG-----SHHHHHHHHHHHTTTCS
T ss_pred CCCCeEEEEE-EC---Cchhhhh-----hHHHHHHHHHHHHhhCC
Confidence 6899999997 31 2233333 56899999999996543
No 24
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.78 E-value=3.3e-19 Score=179.88 Aligned_cols=166 Identities=20% Similarity=0.221 Sum_probs=117.7
Q ss_pred cccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCCC----------------c--eEEEEeeCCeeEEEEEeCCCCCC
Q 005789 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADAT----------------S--INVVVKDGGLKLIQVSDDGHGIR 83 (677)
Q Consensus 22 I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgAt----------------~--I~V~i~~~g~~~i~V~DNG~GI~ 83 (677)
|++|.+-+++.|.++ +..+|+|||+||+||+|+ . |.|.++. +...|+|.|||+||+
T Consensus 12 ~~~l~~ll~~~lys~-----~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~-~~~~i~I~DnG~GMs 85 (220)
T 2wer_A 12 ITQLMSLIINTVYSN-----KEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP-EQKVLEIRDSGIGMT 85 (220)
T ss_dssp HHHHHHHHHHHCCSS-----TTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEG-GGTEEEEEECSCCCC
T ss_pred HHHHHHHHHHhccCC-----chHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECC-CCCEEEEEEcCCCCC
Confidence 666777777766665 468999999999999983 4 4444443 345799999999999
Q ss_pred cccHhhhhhcccCCC-------cccccccccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCee-ccccc
Q 005789 84 YEDLPILCERHTTSK-------LSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM-ESEPK 154 (677)
Q Consensus 84 ~~dl~~~~~r~~TSK-------~~~~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~~-~~~~~ 154 (677)
++|+...+.++++|. +.+..|+ ...|.+|.++.|...++ +|+|.||+.+. .||.+...+|.. ...+.
T Consensus 86 ~edl~~~l~~ia~S~~~~f~~k~~~~~~~---~~iG~fGiG~~s~~~~~~~v~v~S~~~~~-~~~~~~~~~~~~~~i~~~ 161 (220)
T 2wer_A 86 KAELINNLGTIAKSGTKAFMEALSAGADV---SMIGQFGVGFYSLFLVADRVQVISKSNDD-EQYIWESNAGGSFTVTLD 161 (220)
T ss_dssp HHHHHHHTTTSCCTTHHHHHHHHTTTCCG---GGGGGGTCGGGGGGGTEEEEEEEEECTTS-CCEEEEECSSSEEEEEEC
T ss_pred HHHHHHHHHhHhcccchhHHHHhhccCCc---ccCCccchhHHHhhhcCCeeEEEEecCCC-ceeEEEeCCCCceEeecc
Confidence 999999999999984 3333343 45666677776665555 79999999874 588888875543 21111
Q ss_pred --cccCCCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhcCC-CeEE
Q 005789 155 --ACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHT-NVSF 206 (677)
Q Consensus 155 --~~~~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p-~v~F 206 (677)
+....+||+|+|+ |. +.+++++ +..+|.++|++||.+-+ .|.+
T Consensus 162 ~~~~~~~~GT~I~l~-Lk---~~~~~~~-----e~~~i~~~v~~~a~~l~~PI~~ 207 (220)
T 2wer_A 162 EVNERIGRGTILRLF-LK---DDQLEYL-----EEKRIKEVIKRHSEFVAYPIQL 207 (220)
T ss_dssp SSSCCCSSEEEEEEE-EC---TTCGGGG-----CHHHHHHHHHHHCTTCCSCEEE
T ss_pred cCCCCCCCCeEEEEE-EC---cchHHhC-----CHHHHHHHHHHHHhcCCCceEE
Confidence 2356899999998 32 2344443 56799999999996644 3444
No 25
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=99.75 E-value=1.3e-18 Score=172.60 Aligned_cols=140 Identities=15% Similarity=0.189 Sum_probs=111.2
Q ss_pred ccccccEEEEEEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHh--cCcCeEecCCCcChhHHHhhhccccccccccC
Q 005789 466 DIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRF--AHFNAIQLSDPAPLSELLMLALKEEDLDVENS 543 (677)
Q Consensus 466 ~~~~~~~~VG~vd~~yiLiQ~~~~LyLIDqhaahEei~YQ~~l~~f--gn~~~q~L~~P~~l~~Ll~l~l~~~~~~~~~~ 543 (677)
+.|+.+++|||++++|||+|.+++||||||||||||++||++++++ +...+|.|..|+.+. ++..
T Consensus 4 ~~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERi~yE~l~~~~~~~~~~sQ~LL~P~~l~------ls~~------- 70 (197)
T 3kdg_A 4 DRVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPLTFH------YSTN------- 70 (197)
T ss_dssp CCCCCCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHCSSCCEEEEEEEEEEE------CCTT-------
T ss_pred ccCCCCeEEEEEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHccCCCCccccCCCEEEe------cCHH-------
Confidence 3467899999999999999999999999999999999999999998 457889999999887 5332
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHhhhcceEEeeCCC----eeccCcccCCCCCCCCCHHHHHHHhcCCCCCchHHHHHH
Q 005789 544 ENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGN----LSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQ 619 (677)
Q Consensus 544 ~~~~~~~~~~~~~~~~L~~~~emL~eYFgi~Ie~~G~----L~siP~lL~~y~P~~~~Lp~fl~~La~~v~w~~E~~cf~ 619 (677)
+.+++.++.+.|++ +||+++.+|. |+++|.++...... +.+++++..|..... ..-.+-.+
T Consensus 71 ------------e~~~l~~~~~~l~~-~Gf~~e~~g~~~~~v~~vP~~l~~~~~~-~~l~ell~~l~~~~~-~~~~~~~~ 135 (197)
T 3kdg_A 71 ------------EALIIEQHKQELES-VGVFLESFGSNSYIVRCHPAWFPKGEEA-ELIEEIIQQVLDSKN-IDIKKLRE 135 (197)
T ss_dssp ------------HHHHHHHTHHHHHH-TTCCCEECSTTEEEEEEEETTSCTTCHH-HHHHHHHHHHHHHSS-CCHHHHHH
T ss_pred ------------HHHHHHHHHHHHHh-CCCEEEECCCCEEEEEecCcccccccHH-HHHHHHHHHHHhcCC-CCHHHHHH
Confidence 67789999999999 7999999876 99999999975433 456667766654322 22334467
Q ss_pred HHHHHHhhccccCC
Q 005789 620 AIAAALGNFYAMHP 633 (677)
Q Consensus 620 ~i~r~lA~fys~~~ 633 (677)
.++..+|+-.|+.-
T Consensus 136 ~~~~~~ACr~AIk~ 149 (197)
T 3kdg_A 136 EAAIMMSCKGSIKA 149 (197)
T ss_dssp HHHHHHHHCC----
T ss_pred HHHHHHhhHhhccC
Confidence 78888998887653
No 26
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=99.74 E-value=3.5e-18 Score=172.05 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=118.5
Q ss_pred ccccccEEEEEEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHhc---CcCeEecCCCcChhHHHhhhcccccccccc
Q 005789 466 DIVRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRFA---HFNAIQLSDPAPLSELLMLALKEEDLDVEN 542 (677)
Q Consensus 466 ~~~~~~~~VG~vd~~yiLiQ~~~~LyLIDqhaahEei~YQ~~l~~fg---n~~~q~L~~P~~l~~Ll~l~l~~~~~~~~~ 542 (677)
+.++-.++|||++++|||+|.+++||||||||||||++||+++.++. ...+|.|+.|+.+. ++.
T Consensus 25 ~~~p~g~vigQv~~~YIL~e~~~gL~lIDQHAAhERi~yE~l~~~~~~~~~~~sQ~LL~P~~l~------Ls~------- 91 (220)
T 3ncv_A 25 ELPPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFA------ASH------- 91 (220)
T ss_dssp CCCTTCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEEEEEE------CCH-------
T ss_pred CCCCCceeeeeEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHhccCCccceeeCCCeEEE------cCH-------
Confidence 44567899999999999999999999999999999999999999874 47889999999887 432
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHHhhhcceEEeeCCC----eeccCcccCCCCCCCCCHHHHHHHhcCCCCCchHHHHH
Q 005789 543 SENDDLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGN----LSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCF 618 (677)
Q Consensus 543 ~~~~~~~~~~~~~~~~~L~~~~emL~eYFgi~Ie~~G~----L~siP~lL~~y~P~~~~Lp~fl~~La~~v~w~~E~~cf 618 (677)
.+.+++.++++.|++ +||+|+.+|. |+++|.+|..-... +.+.+++..|.....-..-.+.+
T Consensus 92 ------------~e~~~l~~~~~~L~~-lGf~ie~fg~~~v~V~~vP~~l~~~d~~-~ll~~ll~~l~~~~~~~~~~~~~ 157 (220)
T 3ncv_A 92 ------------EECAALADHAETLAG-FGLELSDMGGNTLAVRAAPVMLGKSDVV-SLARDVLGELAQVGSSQTIASHE 157 (220)
T ss_dssp ------------HHHHHHHHHHHHHHH-TTCEEECCSTTEEEEEEEETTSCCSCHH-HHHHHHHHHHTTCC-----CTTH
T ss_pred ------------HHHHHHHHHHHHHHh-CCCEEEECCCCEEEEEEcCcccCCCCHH-HHHHHHHHHHHhcCCCcchHHHH
Confidence 267789999999999 7999999876 99999999874333 44555555555422111122356
Q ss_pred HHHHHHHhhccccCCC-CCCCCCCCcceeeeccCCCCCC
Q 005789 619 QAIAAALGNFYAMHPP-LLPNPSGEGLQCYKKRKPLKNP 656 (677)
Q Consensus 619 ~~i~r~lA~fys~~~~-~~~~~~~~~~~~~~~~~~~~~~ 656 (677)
+.++..+|+-.|+.-- .+. ..++-+|-+.-..|++|
T Consensus 158 ~~~~as~ACr~AIk~g~~Ls--~~Em~~Ll~~L~~~~~P 194 (220)
T 3ncv_A 158 NRILATMSCHGSIRAGRRLT--LPEMNALLRDMENTPRS 194 (220)
T ss_dssp HHHHHHHTTCSSSCSSCCCC--HHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHhhhhcCCCCC--HHHHHHHHHHHHhCCCC
Confidence 7888888988876542 222 23344444444445554
No 27
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.72 E-value=6.2e-19 Score=201.19 Aligned_cols=201 Identities=18% Similarity=0.204 Sum_probs=140.5
Q ss_pred cCHHHHHHHHHHhhhhCCCC-----ceEEEEeeCC--eeEEEEEeCCCCCCcccHhhhhhcc-cCCCccccccccccccc
Q 005789 40 QRPVSAVKELVENSLDADAT-----SINVVVKDGG--LKLIQVSDDGHGIRYEDLPILCERH-TTSKLSKYEDLQSIKSM 111 (677)
Q Consensus 40 ~~p~~~vkELveNSiDAgAt-----~I~V~i~~~g--~~~i~V~DNG~GI~~~dl~~~~~r~-~TSK~~~~~dl~~i~t~ 111 (677)
..+.++|+|||+||+||+++ .|.|.+..+| ...|+|.|||+||+.++++.+|.+| +|+|+.+.+ .+.
T Consensus 36 ~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~-----~s~ 110 (621)
T 2q2e_B 36 RSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALK-----QSR 110 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC------CC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCCcccccc-----ccC
Confidence 36789999999999999887 8999887654 4579999999999999999999887 777765432 467
Q ss_pred CccchhhhhhhcceEE------EEEEEeCCCcceEEEEE----eCCeecc---ccccccCCCceEEEEEeeeccchhhhh
Q 005789 112 GFRGEALASMTYVGHV------TVTTITKGHLHGYRVSY----RDGVMES---EPKACAAVKGTQIMVENLFYNMIARRK 178 (677)
Q Consensus 112 GfRGeALaSIs~vs~v------~I~Tr~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~GTtV~v~dLF~n~PvRrk 178 (677)
|++|++|+++..+++. +|.|+..+...||++.+ ..|.... ...++...+||+|+++ |.
T Consensus 111 Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~--f~------- 181 (621)
T 2q2e_B 111 GQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELE--MR------- 181 (621)
T ss_dssp SSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEE--CS-------
T ss_pred CCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEE--ec-------
Confidence 9999999999888753 89999887667898888 5443321 2334567899999998 32
Q ss_pred cccCCchh--HHHHHHHHHHHHhcCCCeEEEEEECCeeeEEEEeCCC-CCHHHHHH----HHhChhhhccceEecccccC
Q 005789 179 TLQNSSDD--YTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIAT-SSRLDSIR----TVYGVSVASNLVQLEASEYN 251 (677)
Q Consensus 179 ~l~~~~~e--~~~i~~~v~~yAl~~p~v~F~l~~~g~~~~~l~t~~~-~s~~~~i~----~i~G~~~~~~L~~i~~~~~~ 251 (677)
....+ +..|.+.+++||+.||+++|+|.+++ ...+++++. ..+.++.. .+||......++.+.. .
T Consensus 182 ---~~~~~~~~~~I~~~L~~lAllnpgv~I~L~d~~--~~~~~~~gg~~~L~~~~~~i~p~~~G~~~~~~eval~~-~-- 253 (621)
T 2q2e_B 182 ---AAYVKGRRQSIYEYLKATAIVNPHARITLIDPD--GNEEVFERATDKMPEPAEEILPHPEGIELGTLMKMLHY-T-- 253 (621)
T ss_dssp ---CCCCCCSSSSSHHHHHHHHHHCCSCEEEECCTT--SCCEEEECCCCCCCCCCCCCCCCSTTCCHHHHHHHHHH-C--
T ss_pred ---CccchHHHHHHHHHHHHHHhhCCCCEEEEEECC--ceEEEeCCcccchhcccccccCCceeeccCeEEEEEee-C--
Confidence 11122 35788999999999999999999876 344555542 22222222 4577665544444543 2
Q ss_pred CCCCcceEEEEEEeC
Q 005789 252 DSSSFVFKMDGYVSN 266 (677)
Q Consensus 252 ~~~~~~~~v~G~is~ 266 (677)
.++++.||+.+
T Consensus 254 ----~~~~i~sFvN~ 264 (621)
T 2q2e_B 254 ----ERQKLAPFLRY 264 (621)
T ss_dssp ----C-----CTTSS
T ss_pred ----CCeEEEEEeCC
Confidence 45688888776
No 28
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.71 E-value=2.7e-18 Score=193.31 Aligned_cols=201 Identities=17% Similarity=0.237 Sum_probs=143.4
Q ss_pred cCHHHHHHHHHHhhhhCCCC-----ceEEEEeeC----CeeEEEEEeCCCCCCcccHhhhhhcc-cCCCccccccccccc
Q 005789 40 QRPVSAVKELVENSLDADAT-----SINVVVKDG----GLKLIQVSDDGHGIRYEDLPILCERH-TTSKLSKYEDLQSIK 109 (677)
Q Consensus 40 ~~p~~~vkELveNSiDAgAt-----~I~V~i~~~----g~~~i~V~DNG~GI~~~dl~~~~~r~-~TSK~~~~~dl~~i~ 109 (677)
.++.++|+|||+||+||+++ .|.|.+..+ +...|+|.|||+||++++++.+|.+| +|||.. ...
T Consensus 30 ~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~------~~~ 103 (530)
T 2zbk_B 30 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYV------NRQ 103 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCC------CSC
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCcc------ccc
Confidence 35789999999999999988 899998753 46679999999999999999999998 888863 235
Q ss_pred ccCccchhhhhhhcceE------EEEEEEeCCCcceEEEEE--e----CCeecccccccc---CCCceEEEEEeeeccch
Q 005789 110 SMGFRGEALASMTYVGH------VTVTTITKGHLHGYRVSY--R----DGVMESEPKACA---AVKGTQIMVENLFYNMI 174 (677)
Q Consensus 110 t~GfRGeALaSIs~vs~------v~I~Tr~~~~~~~~~~~~--~----~g~~~~~~~~~~---~~~GTtV~v~dLF~n~P 174 (677)
+.|++|.+|+.+..+++ ++|.|+..+...++.+.+ . +|... ...+.. ..+||+|+|. |+.
T Consensus 104 ~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~-~~~~~~~~~~~~GT~V~v~-l~~--- 178 (530)
T 2zbk_B 104 TRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIV-ERGSVENTRGFHGTSVAIS-IPG--- 178 (530)
T ss_dssp CSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEE-EEEEEECCSSCCEEEEEEE-EEC---
T ss_pred CCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccc-cccccCCCCCCCCcEEEEE-ecc---
Confidence 78999999999988876 999999876554665553 2 34433 223332 5789999998 222
Q ss_pred hhhhcccCCchhH-HHHHHHHHHHHhcCCCeEEEEEECCeeeEEEEeCCCCC-----HHHHHHHHhChhhhccceEeccc
Q 005789 175 ARRKTLQNSSDDY-TKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSS-----RLDSIRTVYGVSVASNLVQLEAS 248 (677)
Q Consensus 175 vRrk~l~~~~~e~-~~i~~~v~~yAl~~p~v~F~l~~~g~~~~~l~t~~~~s-----~~~~i~~i~G~~~~~~L~~i~~~ 248 (677)
...++ .+|.+++++||+.||++.|++..++. ..+.+.+..+ ....+...+|.++...+..++..
T Consensus 179 --------~~~e~~~~i~~~l~~~Al~~p~v~~~l~~~~~--~~~~~~~~~~~lp~~~~~~~~~~~Gi~~~~~l~~~~~~ 248 (530)
T 2zbk_B 179 --------DWPKAKSRIYEYIKRTYIITPYAEFIFKDPEG--NVTYYPRLTNKIPKPPQEVKPHPYGVDREEIKILINNL 248 (530)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHCTTCCEEEECTTS--CEEEECCCCCCCCCCCCCCCCCGGGCCHHHHHHHHTTC
T ss_pred --------chhhHHHHHHHHHHHHHHHCCCcEEEEEECCC--eEEEecCccccccCCcceeccCCCChhHHHHHHHHhcc
Confidence 22334 78999999999999999999998773 3444443322 12334445666554444334333
Q ss_pred ccCCCCCcceEEEEEEeCC
Q 005789 249 EYNDSSSFVFKMDGYVSNS 267 (677)
Q Consensus 249 ~~~~~~~~~~~v~G~is~~ 267 (677)
. ..+++.||+++.
T Consensus 249 ~------~~~~l~~fl~~~ 261 (530)
T 2zbk_B 249 K------RDYTIKEFLVNE 261 (530)
T ss_dssp S------SCCBHHHHHHTT
T ss_pred C------CCceeHhhhcCc
Confidence 2 345677777765
No 29
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.71 E-value=4.3e-18 Score=189.57 Aligned_cols=200 Identities=17% Similarity=0.238 Sum_probs=141.1
Q ss_pred CHHHHHHHHHHhhhhCCCC-----ceEEEEeeC----CeeEEEEEeCCCCCCcccHhhhhhcc-cCCCcccccccccccc
Q 005789 41 RPVSAVKELVENSLDADAT-----SINVVVKDG----GLKLIQVSDDGHGIRYEDLPILCERH-TTSKLSKYEDLQSIKS 110 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgAt-----~I~V~i~~~----g~~~i~V~DNG~GI~~~dl~~~~~r~-~TSK~~~~~dl~~i~t 110 (677)
++.++|+|||+||+||+++ .|.|.+..+ +...|+|.|||+||+.++++.+|.+| +|||.. ...+
T Consensus 32 ~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~------~~~~ 105 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYV------NRQT 105 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCC------CSCC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhcccccccccc------cccC
Confidence 5789999999999999988 799998753 46689999999999999999999998 788863 2357
Q ss_pred cCccchhhhhhhcceE------EEEEEEeCCCcceEEEEE--e----CCeeccccccc---cCCCceEEEEEeeeccchh
Q 005789 111 MGFRGEALASMTYVGH------VTVTTITKGHLHGYRVSY--R----DGVMESEPKAC---AAVKGTQIMVENLFYNMIA 175 (677)
Q Consensus 111 ~GfRGeALaSIs~vs~------v~I~Tr~~~~~~~~~~~~--~----~g~~~~~~~~~---~~~~GTtV~v~dLF~n~Pv 175 (677)
.|++|.+|+++..+++ ++|.|+..+...++.+.+ . +|... ...+. ...+||+|+|. |+.+
T Consensus 106 ~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~-~~~~~~~~~~~~GT~V~v~-l~~~--- 180 (471)
T 1mu5_A 106 RGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIV-ERGSVENTRGFHGTSVAIS-IPGD--- 180 (471)
T ss_dssp SCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEE-EEEEEECCTTCCEEEEEEE-EECC---
T ss_pred CCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccc-ccccccCCCCCCCEEEEEE-EcCC---
Confidence 8999999999988875 999999877654665554 2 44443 22333 56799999998 2222
Q ss_pred hhhcccCCchhH-HHHHHHHHHHHhcCCCeEEEEEECCeeeEEEEeCCCCC-----HHHHHHHHhChhhhccceEecccc
Q 005789 176 RRKTLQNSSDDY-TKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSS-----RLDSIRTVYGVSVASNLVQLEASE 249 (677)
Q Consensus 176 Rrk~l~~~~~e~-~~i~~~v~~yAl~~p~v~F~l~~~g~~~~~l~t~~~~s-----~~~~i~~i~G~~~~~~L~~i~~~~ 249 (677)
..+. .+|.+.++++|+.+|++.|++..++.. .+.+..... ........+|.++..-+..+....
T Consensus 181 --------~~e~~~~I~~~l~~~al~~p~v~i~l~~~~~~--~~~~~r~~~~lp~~~~~~~p~~~G~~l~~~~~~~~~~~ 250 (471)
T 1mu5_A 181 --------WPKAKSRIYEYIKRTYIITPYAEFIFKDPEGN--VTYYPRLTNKIPKPPQEVKPHPYGVDREEIKILINNLK 250 (471)
T ss_dssp --------HHHHHHHHHHHHHHHHHHCTTCEEEEECTTCC--EEEECCCCCCCCCCCCCCCCCGGGCCHHHHHHHSTTCS
T ss_pred --------cchHHHHHHHHHHHHHhHCCCeEEEEEECCce--EEEecccccccCCccceeecCCCchhHHHHHHHHHhcC
Confidence 2233 689999999999999999999988743 344433211 112233345555444333333332
Q ss_pred cCCCCCcceEEEEEEeCC
Q 005789 250 YNDSSSFVFKMDGYVSNS 267 (677)
Q Consensus 250 ~~~~~~~~~~v~G~is~~ 267 (677)
..+++.||++..
T Consensus 251 ------~~~~~~~fl~~~ 262 (471)
T 1mu5_A 251 ------RDYTIKEFLVNE 262 (471)
T ss_dssp ------SCCBHHHHHTTS
T ss_pred ------CCcchHHhhhcc
Confidence 345788887765
No 30
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.70 E-value=1.3e-17 Score=172.49 Aligned_cols=171 Identities=16% Similarity=0.189 Sum_probs=118.5
Q ss_pred ccccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCC----------------C--ceEEEEeeCCeeEEEEEeCCCCC
Q 005789 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADA----------------T--SINVVVKDGGLKLIQVSDDGHGI 82 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgA----------------t--~I~V~i~~~g~~~i~V~DNG~GI 82 (677)
.|++|.+-+++.|.++. ..+|+|||+||+||+| + .|.|.++.+. ..|+|.|||+||
T Consensus 13 ei~~Ll~li~~~lYsn~-----eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~-~~l~I~DnGiGM 86 (269)
T 1qy5_A 13 EVNRMMKLIINSLYKNK-----EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK-NLLHVTDTGVGM 86 (269)
T ss_dssp HHHHHHHHHHHHHTTCT-----THHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT-TEEEEEECSCCC
T ss_pred hHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCc-eEEEEEECCCCC
Confidence 47888888898888764 4699999999999986 3 4555555443 479999999999
Q ss_pred CcccHhhhhhcccCC-------Ccccc-----cccccccccCccchhhhhhhcceEEEEEEEeCCCcceEEEEEeCCeec
Q 005789 83 RYEDLPILCERHTTS-------KLSKY-----EDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVME 150 (677)
Q Consensus 83 ~~~dl~~~~~r~~TS-------K~~~~-----~dl~~i~t~GfRGeALaSIs~vs~v~I~Tr~~~~~~~~~~~~~~g~~~ 150 (677)
+++||...+.++++| |+... .|...++.||+++.+++++| .+|+|.||+.++ .+|.+...+|...
T Consensus 87 t~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va--~~v~V~Sk~~~~-~~~~w~s~gg~~~ 163 (269)
T 1qy5_A 87 TREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA--DKVIVTSKHNND-TQHIWESDSNEFS 163 (269)
T ss_dssp CHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTE--EEEEEEEECTTS-CCEEEEECSSCEE
T ss_pred CHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhcc--ceEEEEEEecCC-cEEEEEEeCCEEE
Confidence 999999998898888 33332 35555666666554444433 479999999875 6788877666653
Q ss_pred cccc--cccCCCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhcCC-CeEEEEE
Q 005789 151 SEPK--ACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHT-NVSFSCR 209 (677)
Q Consensus 151 ~~~~--~~~~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p-~v~F~l~ 209 (677)
..+. .....+||+|++. |- ..+..++ +..+|.++|.+|+.+-+ -|.+...
T Consensus 164 i~~~~~~~~~~~GT~I~L~-Lk---~d~~e~l-----e~~~i~~lvkkys~fi~~PI~l~~~ 216 (269)
T 1qy5_A 164 VIADPRGNTLGRGTTITLV-LK---EEASDYL-----ELDTIKNLVKKYSQFINFPIYVWSS 216 (269)
T ss_dssp EEECTTCSCSSSEEEEEEE-EC---GGGGGGG-----SHHHHHHHHHTTCTTCSSCEEEEEE
T ss_pred EEeccCCCcCCCCeEEEEE-Ec---ccchhhh-----hHHHHHHHHHhhhcccceeeEEeee
Confidence 2221 1245799999996 10 1112222 34689999999996543 3555443
No 31
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1
Probab=99.63 E-value=5.2e-16 Score=152.77 Aligned_cols=129 Identities=18% Similarity=0.175 Sum_probs=102.1
Q ss_pred ccccEEEEEEcCcEEEEEECCeEEEEechhHHHHHHHHHHHHHh-cCcCeEecCCCcChhHHHhhhccccccccccCcCc
Q 005789 468 VRHCSFIGMADDVYALLQHNTHMYLANVVSLSKELMYQLVLRRF-AHFNAIQLSDPAPLSELLMLALKEEDLDVENSEND 546 (677)
Q Consensus 468 ~~~~~~VG~vd~~yiLiQ~~~~LyLIDqhaahEei~YQ~~l~~f-gn~~~q~L~~P~~l~~Ll~l~l~~~~~~~~~~~~~ 546 (677)
.+..+++||++++|||+|.+++||||||||| ||++||+++++. +...+|.|..|+.+. ++.
T Consensus 6 ~~~~~vlgQ~~~~yIl~~~~~~L~lIDQHAA-ERi~yE~l~~~~~~~~~~Q~LL~P~~l~------ls~----------- 67 (188)
T 1x9z_A 6 QSFGRVLTIVHSDCALLERDGNISLLSLPVA-ERWLRQAQLTPGEAPVCAQPLLIPLRLK------VSA----------- 67 (188)
T ss_dssp CCCCEEEEEETTTEEEEEETTEEEEEEHHHH-HHHHHHHHHSBTTBCCCEEEEEEEEEEE------CCH-----------
T ss_pred CCCceeeeeecCEEEEEEeCCCEEEEeHHHH-HHHHHHHHHHhcCCCCCcccCCCCEEEE------eCH-----------
Confidence 3567899999999999999999999999999 999999999872 357789999998887 532
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcceEEeeCCC---eeccCcccCCCCCCCCCHHHHHHHhcCCCCCchHHHHHHHHHH
Q 005789 547 DLKEKIAEMNTELLKQKAEMLEEYFCVKIDTRGN---LSRLPIILDQYTPDMDRIPEFVLCLGNDVDWEDEKCCFQAIAA 623 (677)
Q Consensus 547 ~~~~~~~~~~~~~L~~~~emL~eYFgi~Ie~~G~---L~siP~lL~~y~P~~~~Lp~fl~~La~~v~w~~E~~cf~~i~r 623 (677)
.+.+.+.++.+.|++ +||+|+.+|. |+++|.+|..-... +.+++++..|..... .. .+.++.
T Consensus 68 --------~e~~~l~~~~~~l~~-~Gf~~e~~g~~~~v~~vP~~l~~~~~~-~li~~ll~~l~~~~~-~~----~~~~~~ 132 (188)
T 1x9z_A 68 --------EEKSALEKAQSALAE-LGIDFQSDAQHVTIRAVPLPLRQQNLQ-ILIPELIGYLAKQSV-FE----PGNIAQ 132 (188)
T ss_dssp --------HHHHHHHHHHHHHHH-TTCEEEECSSEEEEEEEEGGGTTSCHH-HHHHHHHHHHTTCSS-CC----HHHHHH
T ss_pred --------HHHHHHHHHHHHHHh-CCcEEEEcCCcEEEEecCchhcccCHH-HHHHHHHHHHHhCCc-ch----HHHHHH
Confidence 267889999999999 7999999987 99999999875433 456666666643111 11 155666
Q ss_pred HHhhcc
Q 005789 624 ALGNFY 629 (677)
Q Consensus 624 ~lA~fy 629 (677)
.+|+-.
T Consensus 133 ~~AC~~ 138 (188)
T 1x9z_A 133 WIARNL 138 (188)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 677655
No 32
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.6e-15 Score=172.01 Aligned_cols=153 Identities=19% Similarity=0.206 Sum_probs=112.7
Q ss_pred CcccCHHHHHHHHHHhhhhCCC------------------CceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCC-
Q 005789 37 EVIQRPVSAVKELVENSLDADA------------------TSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTS- 97 (677)
Q Consensus 37 evI~~p~~~vkELveNSiDAgA------------------t~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS- 97 (677)
....++..+|+|||+||+||++ ..|.|.++.++ ..|+|.|||+||+++|+...+.++++|
T Consensus 22 sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~-~~I~I~DnGiGMt~edl~~~l~tIA~Sg 100 (677)
T 2cg9_A 22 TVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ-KVLEIRDSGIGMTKAELINNLGTIAKSG 100 (677)
T ss_dssp SCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGG-TEEEEEECSCCCCHHHHHGGGSSSSSCT
T ss_pred hCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCC-CEEEEEECCCCCCHHHHHHHHHhHhccc
Confidence 4566788999999999999984 46777777666 469999999999999999999999999
Q ss_pred ------CcccccccccccccCccchhhhhh-hcceEEEEEEEeCCCcceEEEEEeCCee-ccccc--cccCCCceEEEEE
Q 005789 98 ------KLSKYEDLQSIKSMGFRGEALASM-TYVGHVTVTTITKGHLHGYRVSYRDGVM-ESEPK--ACAAVKGTQIMVE 167 (677)
Q Consensus 98 ------K~~~~~dl~~i~t~GfRGeALaSI-s~vs~v~I~Tr~~~~~~~~~~~~~~g~~-~~~~~--~~~~~~GTtV~v~ 167 (677)
|+....|+ ...|..|.++.|. +.+.+|+|+||+.++ .||.+...+|.. ...+. ....++||+|++.
T Consensus 101 t~~f~~kl~~~~d~---~~IGqFGvGFySaf~vadkV~V~Sk~~~~-~~~~W~s~g~~~~ti~~~~~~~~~~~GT~I~L~ 176 (677)
T 2cg9_A 101 TKAFMEALSAGADV---SMIGQFGVGFYSLFLVADRVQVISKSNDD-EQYIWESNAGGSFTVTLDEVNERIGRGTILRLF 176 (677)
T ss_dssp THHHHSCCCSSCCC---CCCCCTTCTTGGGGGTEEEEEEEEECTTS-CEEEEEECSSSEEEEEECCSSCCCSSEEEEEEE
T ss_pred cHHHHHhhhcccch---hhcCCCCchhHHHhhcCcEEEEEEccCCC-ceEEEEEcCCceEEEeecCCCCCCCCCeEEEEE
Confidence 66544443 4566667776444 444579999999985 589888876543 21221 1356899999997
Q ss_pred eeeccchhhhhcccCCchh---HHHHHHHHHHHHhcCC-CeEE
Q 005789 168 NLFYNMIARRKTLQNSSDD---YTKIVDLLSRMAIHHT-NVSF 206 (677)
Q Consensus 168 dLF~n~PvRrk~l~~~~~e---~~~i~~~v~~yAl~~p-~v~F 206 (677)
|+....| ..+|.++|.+||-+-+ -|.+
T Consensus 177 ------------Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l 207 (677)
T 2cg9_A 177 ------------LKDDQLEYLEEKRIKEVIKRHSEFVAYPIQL 207 (677)
T ss_dssp ------------ECTTGGGGGCHHHHHHHHHHHSTTCSSCEEE
T ss_pred ------------EcchhhccccHHHHHHHHHHHHhhCCCCeEE
Confidence 3333333 6789999999987643 3444
No 33
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.55 E-value=1.4e-14 Score=149.64 Aligned_cols=170 Identities=20% Similarity=0.273 Sum_probs=120.9
Q ss_pred cccCChHHHHHHhcCCcccCHHHHHHHHHHhhhhCCC------------------CceEEEEeeCCeeEEEEEeCCCCCC
Q 005789 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADA------------------TSINVVVKDGGLKLIQVSDDGHGIR 83 (677)
Q Consensus 22 I~~L~~~v~~kIaAgevI~~p~~~vkELveNSiDAgA------------------t~I~V~i~~~g~~~i~V~DNG~GI~ 83 (677)
|++|-+-+++.+-++ +..+|+|||+||.||.+ ..|.|.++.++ ..|+|.|||.||+
T Consensus 32 i~~Ll~ll~~~lYsn-----~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~-~tLtI~DNGiGMt 105 (281)
T 3peh_A 32 VTRLMDIIVNSLYTQ-----KEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEK-NILSITDTGIGMT 105 (281)
T ss_dssp HHHHHHHHHHHHTTC-----GGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTT-TEEEEEECSCCCC
T ss_pred HHHHHHHHHHhccCC-----hHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCC-cEEEEEeCCCCCC
Confidence 667777777766654 58899999999999975 35666666554 3699999999999
Q ss_pred cccHhhhhhcccCCCcccc-ccc----ccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCCe-eccccc--
Q 005789 84 YEDLPILCERHTTSKLSKY-EDL----QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGV-MESEPK-- 154 (677)
Q Consensus 84 ~~dl~~~~~r~~TSK~~~~-~dl----~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g~-~~~~~~-- 154 (677)
++||...+...++|....| +.+ ......|..|.++.|...|| +|+|.||+.+. .+|.+...+|. ....+.
T Consensus 106 ~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~-~~~~Wes~g~g~fti~~~~~ 184 (281)
T 3peh_A 106 KVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDD-EQYIWESTADAKFTIYKDPR 184 (281)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTS-CCEEEEEETTSCEEEEECTT
T ss_pred HHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccccCEEEEEEecCCC-CEEEEEECCCccEEEEEcCC
Confidence 9999887777777743322 111 23467899999999988887 59999999875 68888876543 221221
Q ss_pred cccCCCceEEEEEeeeccchhhhhcccCCch---hHHHHHHHHHHHHhcCC-CeEEEEEE
Q 005789 155 ACAAVKGTQIMVENLFYNMIARRKTLQNSSD---DYTKIVDLLSRMAIHHT-NVSFSCRK 210 (677)
Q Consensus 155 ~~~~~~GTtV~v~dLF~n~PvRrk~l~~~~~---e~~~i~~~v~~yAl~~p-~v~F~l~~ 210 (677)
.....+||+|++. |+.... +-.+|.++|.+|+-+-| -|.+...+
T Consensus 185 ~~~~~~GT~I~L~------------Lked~~e~le~~~ik~ivkkys~fi~~pI~l~~~k 232 (281)
T 3peh_A 185 GATLKRGTRISLH------------LKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHEN 232 (281)
T ss_dssp CSTTSSEEEEEEE------------ECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEEEEE
T ss_pred CCCCCCCeEEEEE------------ECCchhhhcCHHHHHHHHHHhhccCCcceEEeeee
Confidence 1245799999996 333223 34789999999987644 35555444
No 34
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=99.53 E-value=2.9e-14 Score=155.96 Aligned_cols=178 Identities=13% Similarity=0.100 Sum_probs=135.6
Q ss_pred ccccCChHHHHHHhcCCccc----------------------------CHHHHHHHHHHhhhhCC-----CCceEEEEee
Q 005789 21 KIHRLEESVVNRIAAGEVIQ----------------------------RPVSAVKELVENSLDAD-----ATSINVVVKD 67 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~----------------------------~p~~~vkELveNSiDAg-----At~I~V~i~~ 67 (677)
.|+.|..--.-|.+.|.+|- .+..+|+|+|+||+|+. |+.|.|.|+.
T Consensus 16 ~~~~L~glE~VrkRPgMYIGst~~~~~~~~v~e~~~~~~~~~~v~~~~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~ 95 (418)
T 1pvg_A 16 KYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHA 95 (418)
T ss_dssp HSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET
T ss_pred heeecchhHHHhhCCCceEcccCCCcceeeeeeccccccccccccccchHHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC
Confidence 58888888888888887763 35679999999999975 8999999997
Q ss_pred CCeeEEEEEeCCCCCCcccHh--------h-hhhcccCCCcccccccccccccCccchhhhhhhcce-EEEEEEEeCCCc
Q 005789 68 GGLKLIQVSDDGHGIRYEDLP--------I-LCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHL 137 (677)
Q Consensus 68 ~g~~~i~V~DNG~GI~~~dl~--------~-~~~r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~ 137 (677)
+|. +|+|.|||.||+.+..+ . ++..|+++|+.+ -..-.+-|.+|.+++...++| +++|++++..+.
T Consensus 96 d~~-sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~---~~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdG 171 (418)
T 1pvg_A 96 EEH-TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDD---DEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 171 (418)
T ss_dssp TTT-EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCT---TSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTT
T ss_pred CCC-EEEEEECCCcccCcccccCCcccceEEEEEEecccccCC---CceeccCCccceeeeeeeeccceEEEEEEECCCC
Confidence 642 59999999999988744 2 457799999753 233468899999999999999 599999973233
Q ss_pred ceEEEEEeCC--eecccc--cccc-CCCceEEEEEeeeccchhhhhcccCCchhHHH---HHHHHHHHHhcCCCeEEEEE
Q 005789 138 HGYRVSYRDG--VMESEP--KACA-AVKGTQIMVENLFYNMIARRKTLQNSSDDYTK---IVDLLSRMAIHHTNVSFSCR 209 (677)
Q Consensus 138 ~~~~~~~~~g--~~~~~~--~~~~-~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~---i~~~v~~yAl~~p~v~F~l~ 209 (677)
..|+..|.+| ... .+ .++. ..+||+|+.. |....| ....-.+.. +.+.++.+|..+|++.+.|.
T Consensus 172 k~y~q~f~~G~~~~~-~p~i~~~~~~~tGT~V~F~------PD~~iF-~~~~f~~d~l~~l~~RlrelA~Ln~Gl~I~l~ 243 (418)
T 1pvg_A 172 QKYVQKWENNMSICH-PPKITSYKKGPSYTKVTFK------PDLTRF-GMKELDNDILGVMRRRVYDINGSVRDINVYLN 243 (418)
T ss_dssp EEEEEEEETTTTEEC-CCEEEECCSSCCEEEEEEE------ECGGGG-TCSSCCHHHHHHHHHHHHHHHHHSTTCEEEET
T ss_pred cEEEEEEEcCCCccC-CCeecccCCCCCceEEEEE------EChHHc-CCcccCHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 5699999887 343 22 1222 4689999975 766655 333333444 67889999999999999986
Q ss_pred E
Q 005789 210 K 210 (677)
Q Consensus 210 ~ 210 (677)
+
T Consensus 244 d 244 (418)
T 1pvg_A 244 G 244 (418)
T ss_dssp T
T ss_pred c
Confidence 4
No 35
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.49 E-value=2.7e-14 Score=144.64 Aligned_cols=152 Identities=18% Similarity=0.255 Sum_probs=107.2
Q ss_pred CCcccCHHHHHHHHHHhhhhCCCC------------------ceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCC
Q 005789 36 GEVIQRPVSAVKELVENSLDADAT------------------SINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (677)
Q Consensus 36 gevI~~p~~~vkELveNSiDAgAt------------------~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (677)
.....++..+|+|||+||.||.+. .|.|..+.++ ..|+|.|||.||+++|+...+.+.+.|
T Consensus 34 ~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~L~I~DnGiGMt~edL~~~LgtIA~S 112 (239)
T 3nmq_A 34 NTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQE-RTLTLVDTGIGMTKADLINNLGTIAKS 112 (239)
T ss_dssp HSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTT-TEEEEEECSCCCCHHHHHTHHHHHHHH
T ss_pred HhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCc-cEEEEEeCCCCCCHHHHHHHHHHHhcc
Confidence 445567889999999999999763 4566665544 369999999999999997766666665
Q ss_pred Ccccc-ccc---ccccccCccchhhhhhhcce-EEEEEEEeCCCcceEEEEEeCC-eeccccc-cccCCCceEEEEEeee
Q 005789 98 KLSKY-EDL---QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDG-VMESEPK-ACAAVKGTQIMVENLF 170 (677)
Q Consensus 98 K~~~~-~dl---~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~~~~~~~~~~~g-~~~~~~~-~~~~~~GTtV~v~dLF 170 (677)
....| +.+ ......|..|.++.|...|| +|+|.||+.++ .+|.|...+| .....+. .....+||+|++.
T Consensus 113 gtk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~-~~~~W~s~~~g~fti~~~~~~~~~~GT~I~L~--- 188 (239)
T 3nmq_A 113 GTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDD-EQYAWESSAGGSFTVRADHGEPIGRGTKVILH--- 188 (239)
T ss_dssp HHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTS-CCEEEEECSTTEEEEEECCSSCCSSEEEEEEE---
T ss_pred cchhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCCC-ceeEEEECCCCcEEEEecCCCcCCCCCEEEEE---
Confidence 32222 111 23568999999999999999 59999999754 5788776543 3321111 1234799999997
Q ss_pred ccchhhhhcccCCch---hHHHHHHHHHHHHhcC
Q 005789 171 YNMIARRKTLQNSSD---DYTKIVDLLSRMAIHH 201 (677)
Q Consensus 171 ~n~PvRrk~l~~~~~---e~~~i~~~v~~yAl~~ 201 (677)
|+.... +-.+|.++|.+|+-+-
T Consensus 189 ---------lk~d~~e~l~~~~i~~lv~kys~fi 213 (239)
T 3nmq_A 189 ---------LKEDQTEYLEERRVKEVVKKHSQFI 213 (239)
T ss_dssp ---------ECGGGGGGGSHHHHHHHHHHHCTTC
T ss_pred ---------ECCChHHhcCHHHHHHHHHHHHhcc
Confidence 332222 3468999999998653
No 36
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.18 E-value=4.7e-11 Score=121.02 Aligned_cols=126 Identities=21% Similarity=0.235 Sum_probs=86.9
Q ss_pred ceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCCCcccc-ccc----ccccccCccchhhhhhhcce-EEEEEEEe
Q 005789 60 SINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKY-EDL----QSIKSMGFRGEALASMTYVG-HVTVTTIT 133 (677)
Q Consensus 60 ~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~-~dl----~~i~t~GfRGeALaSIs~vs-~v~I~Tr~ 133 (677)
.|.|.++.++. .|+|.|||.||+++||...+...++|....| +.+ ....-.|..|.++.|...|| +|+|+||
T Consensus 120 ~I~I~~Dk~~~-tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmVAdkV~V~Sk- 197 (272)
T 3ied_A 120 IIKIKPDKEKK-TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVSNRVEVYTK- 197 (272)
T ss_dssp CEEEEEETTTT-EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTEEEEEEEEE-
T ss_pred EEEEEEeCCCC-EEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeeccCCEEEEEEc-
Confidence 46666665554 5999999999999999998888887743322 111 22456788888999988887 5999999
Q ss_pred CCCcceEEEEEeC-Ceecccccc-------ccCCCceEEEEEeeeccchhhhhcccCCch---hHHHHHHHHHHHHhc
Q 005789 134 KGHLHGYRVSYRD-GVMESEPKA-------CAAVKGTQIMVENLFYNMIARRKTLQNSSD---DYTKIVDLLSRMAIH 200 (677)
Q Consensus 134 ~~~~~~~~~~~~~-g~~~~~~~~-------~~~~~GTtV~v~dLF~n~PvRrk~l~~~~~---e~~~i~~~v~~yAl~ 200 (677)
. +..+|+|...+ |.....+.+ ....+||+|++. |+.... +-.+|.++|.+|+-+
T Consensus 198 ~-dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~------------Lked~~e~le~~~ik~likkys~f 262 (272)
T 3ied_A 198 K-EDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILH------------LKEECDEYLEDYKLKELIKKYSEF 262 (272)
T ss_dssp S-SSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEE------------ECGGGGGGGSHHHHHHHHHHHCTT
T ss_pred C-CCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEE------------ECCChHHhcCHHHHHHHHHHHHhC
Confidence 4 45688887754 443211111 235799999986 332222 346899999999854
No 37
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=98.75 E-value=5.5e-08 Score=118.18 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=121.6
Q ss_pred ccccCChHHHHHHhcCCcccC----------------------------HHHHHHHHHHhhhh---CC--CCceEEEEe-
Q 005789 21 KIHRLEESVVNRIAAGEVIQR----------------------------PVSAVKELVENSLD---AD--ATSINVVVK- 66 (677)
Q Consensus 21 ~I~~L~~~v~~kIaAgevI~~----------------------------p~~~vkELveNSiD---Ag--At~I~V~i~- 66 (677)
.|++|..--.-|.+.|.+|.+ +...|.|.|+||+| || .+.|.|+|+
T Consensus 11 ~yq~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~I~V~i~~ 90 (1177)
T 4gfh_A 11 KYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHA 90 (1177)
T ss_dssp HSEECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET
T ss_pred cccccccchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCeEEEEEEC
Confidence 599999999999999998864 57899999999999 55 478999998
Q ss_pred eCCeeEEEEEeCCCCCCccc--------Hhhh-hhcccCCCcccccccccccccCccchhhhhhhcce-EEEEEEEeCCC
Q 005789 67 DGGLKLIQVSDDGHGIRYED--------LPIL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGH 136 (677)
Q Consensus 67 ~~g~~~i~V~DNG~GI~~~d--------l~~~-~~r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~vs-~v~I~Tr~~~~ 136 (677)
.+| +|+|.|||.|||.+- ++.+ +.-||.+|+.+ -..-.+-|-+|.+.+-..++| ++.|.+.....
T Consensus 91 ~d~--sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~---~~ykvSGGLHGVG~svVNALS~~~~vev~~~r~ 165 (1177)
T 4gfh_A 91 EEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDD---DEKKVTGGRNGYGAKLCNIFSTEFILETADLNV 165 (1177)
T ss_dssp TTT--EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCC---SSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTT
T ss_pred CCC--EEEEEecCCcccccccCCCCCEeeeeeccccccccCcCC---CCCeEeccCCChhhhHHhhcCCceEEEEEEEcC
Confidence 466 599999999999763 3444 45688888753 233457799999988888888 47777765444
Q ss_pred cceEEEEEeCCeecccc-c--cc-cCCCceEEEEEeeeccchhhhhcccCCchhHHHHHHHHHHHHhcCCC
Q 005789 137 LHGYRVSYRDGVMESEP-K--AC-AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTN 203 (677)
Q Consensus 137 ~~~~~~~~~~g~~~~~~-~--~~-~~~~GTtV~v~dLF~n~PvRrk~l~~~~~e~~~i~~~v~~yAl~~p~ 203 (677)
..-|+..|.+|...... + .+ .+.+||+|+.. |.-..| ....-.+..+....+++|..++.
T Consensus 166 Gk~y~q~f~~g~~~~~~~~i~~~~~~~tGT~V~F~------PD~~iF-~~~~~~~d~l~~~~r~~~~l~~~ 229 (1177)
T 4gfh_A 166 GQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFK------PDLTRF-GMKELDNDILGVMRRRVYDINGS 229 (1177)
T ss_dssp TEEEEEEEETTTTEECCCEEEECCSSCCCEEEEEE------ECHHHH-TCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEECCcccCCCCeeecCCCCCCceEEEEE------eCHHhc-CCcEeCHHHHHHHHHHHHHhcCC
Confidence 45689999988654221 1 22 34689999974 554444 22223344555666666666543
No 38
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=98.07 E-value=1.9e-05 Score=72.64 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHhhhhCC-----CCceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcccCCCcccccccccccccCcc
Q 005789 41 RPVSAVKELVENSLDAD-----ATSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFR 114 (677)
Q Consensus 41 ~p~~~vkELveNSiDAg-----At~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~i~t~GfR 114 (677)
.+..++.|||+||+.++ ...|.|.+. .++.-.|+|.|||.||+ +++.++.++.++|-. .+-.
T Consensus 39 ~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~~----------~~~~ 106 (145)
T 1th8_A 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLFTTKPE----------LERS 106 (145)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC-----------------CCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhcccccCCCC----------CCCC
Confidence 56789999999999987 367888875 35555799999999999 899999998887631 1224
Q ss_pred chhhhhhhcce
Q 005789 115 GEALASMTYVG 125 (677)
Q Consensus 115 GeALaSIs~vs 125 (677)
|.+|+-+..+.
T Consensus 107 GlGL~iv~~~~ 117 (145)
T 1th8_A 107 GMGFTIMENFM 117 (145)
T ss_dssp SCHHHHHHHHS
T ss_pred cchHHHHHHHH
Confidence 66776665554
No 39
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=98.05 E-value=1.4e-05 Score=74.56 Aligned_cols=59 Identities=25% Similarity=0.210 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHhhhhCCCCceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcccCCCc
Q 005789 41 RPVSAVKELVENSLDADATSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgAt~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (677)
....++.+||+||+.++...|.|.+. .++.-.|.|.|||.||+.++++.+|.+|.+++-
T Consensus 47 ~l~~il~nll~NAik~~~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~ 106 (161)
T 1bxd_A 47 SIKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDS 106 (161)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSC
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCC
Confidence 36789999999999999889999886 455557999999999999999999999998764
No 40
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=98.05 E-value=1.3e-05 Score=73.82 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhhhCCCCceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCCc
Q 005789 42 PVSAVKELVENSLDADATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (677)
Q Consensus 42 p~~~vkELveNSiDAgAt~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (677)
...++.+||+||+.++...|.|.+.. ++.-.|.|.|||.||+.++++.+|.++.+++-
T Consensus 45 l~~il~nLl~NAi~~~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~ 103 (152)
T 1id0_A 45 FVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDT 103 (152)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTC
T ss_pred HHHHHHHHHHHHHHhCcCeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhccceeccC
Confidence 67899999999999988888888864 44447999999999999999999999987763
No 41
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.93 E-value=9.2e-06 Score=79.29 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhhhCCCC--ceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 42 PVSAVKELVENSLDADAT--SINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 42 p~~~vkELveNSiDAgAt--~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
...++.+||.||+.+... .|.|.+...+ |.|.|||.||++++++.+|.+|.+++
T Consensus 118 l~~il~nLl~NAi~~~~~~~~i~i~~~~~~---i~V~D~G~Gi~~~~~~~if~~f~~~~ 173 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLNADN---FIVRDNGPGVTPEALARIGERFYRPP 173 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEECSSE---EEEECSCC------------------
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEccCe---EEEEECCCCCCHHHHHHHHhhhccCC
Confidence 567899999999998744 4566555444 89999999999999999999998754
No 42
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=97.89 E-value=1.5e-05 Score=73.76 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhhhCC---CCceEEEEeeC-C----------eeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 42 PVSAVKELVENSLDAD---ATSINVVVKDG-G----------LKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 42 p~~~vkELveNSiDAg---At~I~V~i~~~-g----------~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
...++.+||.||+.+. ...|.|.+... + .-.|.|.|||.||++++++.+|.++.++|
T Consensus 49 l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~ 119 (160)
T 1r62_A 49 IEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGR 119 (160)
T ss_dssp HHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC----------------
T ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCC
Confidence 6788999999999975 56788877532 2 34689999999999999999999998876
No 43
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.89 E-value=2.5e-05 Score=75.08 Aligned_cols=76 Identities=22% Similarity=0.328 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhhhCC--------------CCceEEEEe-eCCeeEEEEEeCCCCCCcccH-------------------
Q 005789 42 PVSAVKELVENSLDAD--------------ATSINVVVK-DGGLKLIQVSDDGHGIRYEDL------------------- 87 (677)
Q Consensus 42 p~~~vkELveNSiDAg--------------At~I~V~i~-~~g~~~i~V~DNG~GI~~~dl------------------- 87 (677)
...++.+||+||+.++ ...|.|.+. .++.-.|.|.|||.||+++++
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLS 127 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccc
Confidence 4556999999999985 567888875 455557999999999999987
Q ss_pred -----hhhhhcccCCCcccccccccccccCccchhhhhhhcc
Q 005789 88 -----PILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYV 124 (677)
Q Consensus 88 -----~~~~~r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~v 124 (677)
+.+|.++.++|-.. ...+-.|.+|+-+..+
T Consensus 128 ~~~~~~~if~~~~~~~~~~-------~~~~g~GlGL~iv~~~ 162 (189)
T 1i58_A 128 DQEILNFLFVPGFSTKEKV-------SEVSGRGVGMDVVKNV 162 (189)
T ss_dssp HHHHHGGGGSTTCSHHHHH-------HGGGTCCCHHHHHHHH
T ss_pred hhhhHHHhcCCcccccccC-------CCCCCCccCHHHHHHH
Confidence 77888887765321 1112246677655444
No 44
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.88 E-value=5.7e-05 Score=76.02 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHhhhhCCCC-----ceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcccCCCc
Q 005789 41 RPVSAVKELVENSLDADAT-----SINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgAt-----~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (677)
....++..||.||+++... .|.|.+. .++.-.|.|.|||.||++++++.+|.+|.+.+-
T Consensus 138 ~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~ 202 (258)
T 2c2a_A 138 RIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDS 202 (258)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC-
T ss_pred HHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhccccccCCC
Confidence 3678999999999998643 3777765 345557999999999999999999999988763
No 45
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.81 E-value=7.3e-05 Score=73.91 Aligned_cols=58 Identities=29% Similarity=0.424 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHhhhhCC--CCceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 41 RPVSAVKELVENSLDAD--ATSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 41 ~p~~~vkELveNSiDAg--At~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
.+..++.+||.||+.+. +..|.|.+. .++.-.|.|.|||.||++++++.+|.++.++|
T Consensus 123 ~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~ 183 (244)
T 3d36_A 123 KFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTTK 183 (244)
T ss_dssp HHHHHHHHHHHHHHHTCTTCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTCCSS
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcccccCC
Confidence 36789999999999985 567777775 45556799999999999999999999998876
No 46
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.80 E-value=8.7e-05 Score=68.23 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHhhhhCCC-CceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 41 RPVSAVKELVENSLDADA-TSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgA-t~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
....++.+||.||+.++. ..|.|.+. .++.-.|+|.|||.||++++++.+|.+|.+++
T Consensus 46 ~l~~il~nLl~NA~~~~~~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~ 105 (150)
T 1ysr_A 46 GLRLAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGS 105 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC---
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCC
Confidence 356889999999999864 46777775 34555799999999999999999999998653
No 47
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.78 E-value=2.4e-05 Score=71.73 Aligned_cols=58 Identities=22% Similarity=0.204 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHhhhhCC--CCceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 41 RPVSAVKELVENSLDAD--ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 41 ~p~~~vkELveNSiDAg--At~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
....++.+||.||+.+. ...|.|.+.. ++.-.|.|.|||.||+.++++.+|.++.++|
T Consensus 47 ~l~~il~nll~NAi~~~~~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~ 107 (152)
T 3a0y_A 47 RIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK 107 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhhccCC
Confidence 46788999999999975 5678888764 4455799999999999999999999998876
No 48
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.77 E-value=6.4e-05 Score=75.79 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhhhCCC--CceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 42 p~~~vkELveNSiDAgA--t~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
...++.+||.||+++.. ..|.|.+.. ++.-.|.|.|||.||++++++.+|.++.++|
T Consensus 156 l~~il~nLl~NA~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~ 215 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRD 215 (268)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEEEEECSSEEEEEEEESSCCCCHHHHTTTTSTTCCCS
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCC
Confidence 67899999999999864 578888764 4555799999999999999999999998766
No 49
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.71 E-value=0.00012 Score=69.49 Aligned_cols=77 Identities=19% Similarity=0.326 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhhhCCC--CceEEEE--e-eCCeeEEEEEeCCCCCCcccHhhhhhcccCCCcccccccccccccCccch
Q 005789 42 PVSAVKELVENSLDADA--TSINVVV--K-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGE 116 (677)
Q Consensus 42 p~~~vkELveNSiDAgA--t~I~V~i--~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~i~t~GfRGe 116 (677)
...++.+||.||+++.. ..|.|.+ . .++.-.|+|.|||.||+.+++..+|.++.+++-... ...+-.|.
T Consensus 44 l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~------~~~~g~Gl 117 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKART------RKLGGTGL 117 (177)
T ss_dssp HHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------------CCCCCC
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCC------CCCCCCCc
Confidence 67899999999999863 4556655 4 344557999999999999999999999887643211 11223466
Q ss_pred hhhhhhcc
Q 005789 117 ALASMTYV 124 (677)
Q Consensus 117 ALaSIs~v 124 (677)
+|+.+..+
T Consensus 118 GL~iv~~~ 125 (177)
T 3sl2_A 118 GLAIAKEM 125 (177)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHHH
Confidence 67655443
No 50
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.71 E-value=7.4e-05 Score=67.32 Aligned_cols=46 Identities=28% Similarity=0.192 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhhhC-CCCceEEEEe-eCCeeEEEEEeCCCCCCcccH
Q 005789 42 PVSAVKELVENSLDA-DATSINVVVK-DGGLKLIQVSDDGHGIRYEDL 87 (677)
Q Consensus 42 p~~~vkELveNSiDA-gAt~I~V~i~-~~g~~~i~V~DNG~GI~~~dl 87 (677)
...++.||++||+.+ +++.|.|.+. .++.-.|+|.|||.||+++++
T Consensus 41 l~~il~nll~Na~k~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 467899999999995 4788999886 345557999999999998765
No 51
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=97.68 E-value=5.2e-05 Score=81.95 Aligned_cols=86 Identities=21% Similarity=0.326 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHhhhhCC--------------CCceEEEEe-eCCeeEEEEEeCCCCCCcccH------------------
Q 005789 41 RPVSAVKELVENSLDAD--------------ATSINVVVK-DGGLKLIQVSDDGHGIRYEDL------------------ 87 (677)
Q Consensus 41 ~p~~~vkELveNSiDAg--------------At~I~V~i~-~~g~~~i~V~DNG~GI~~~dl------------------ 87 (677)
....++.+||.||+|+| ...|.|.+. .++.-.|+|.|||.||+++.+
T Consensus 106 ~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~ 185 (379)
T 1b3q_A 106 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATL 185 (379)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTS
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcC
Confidence 34566999999999997 457888775 466668999999999999987
Q ss_pred ------hhhhhcccCCCcccccccccccccCccchhhhhhhcc-----eEEEEEEEe
Q 005789 88 ------PILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYV-----GHVTVTTIT 133 (677)
Q Consensus 88 ------~~~~~r~~TSK~~~~~dl~~i~t~GfRGeALaSIs~v-----s~v~I~Tr~ 133 (677)
+.+|.+|.++|-.. ...+-+|.+|+-.... ++++|.|..
T Consensus 186 ~~~~~~~~iF~p~fst~~~~-------~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~ 235 (379)
T 1b3q_A 186 SDQEILNFLFVPGFSTKEKV-------SEVSGRGVGMDVVKNVVESLNGSMGIESEK 235 (379)
T ss_dssp CTHHHHSGGGSTTCC------------------CCCSHHHHHHHHHTTCEEEEEEET
T ss_pred CHHHHHHHhcCCCCccCCcc-------CCCCCccccHHHHHHHHHHCCCEEEEEEcC
Confidence 77888876655321 1233456666544322 467787764
No 52
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.66 E-value=8.4e-05 Score=80.86 Aligned_cols=60 Identities=22% Similarity=0.219 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHhhhhCCCC---------ceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCCcc
Q 005789 41 RPVSAVKELVENSLDADAT---------SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgAt---------~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~ 100 (677)
....++.+||.||+.|... .|.|.+.. ++.-.|.|.|||.||++++++.+|.+|.+++-.
T Consensus 243 ~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~ 312 (407)
T 2q8g_A 243 HLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPR 312 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCC
Confidence 4678999999999998633 68998864 344579999999999999999999999987643
No 53
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.65 E-value=0.0001 Score=79.87 Aligned_cols=59 Identities=22% Similarity=0.216 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHhhhhCCCC---------ceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCCc
Q 005789 41 RPVSAVKELVENSLDADAT---------SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgAt---------~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (677)
....++.+||.||+.|... .|.|.+.. ++.-.|.|.|||.||++++++.+|.+|.+.+-
T Consensus 230 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~ 298 (394)
T 2e0a_A 230 HLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAP 298 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCC
Confidence 3678999999999998532 49998864 34457999999999999999999999998864
No 54
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.65 E-value=7.3e-05 Score=80.68 Aligned_cols=59 Identities=24% Similarity=0.319 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHhhhhCCCC----------ceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCCc
Q 005789 41 RPVSAVKELVENSLDADAT----------SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgAt----------~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (677)
....++.+||.||+.|... .|.|.+.. ++.-.|+|.|||.||++++++.+|.+|.|.|-
T Consensus 238 ~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~ 307 (388)
T 1gkz_A 238 PLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAE 307 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCcccccCC
Confidence 4678999999999998532 79998864 44457999999999999999999999988874
No 55
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.58 E-value=0.00027 Score=63.15 Aligned_cols=46 Identities=30% Similarity=0.393 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHhhhhCC-CCceEEEEeeCCeeEEEEEeCCCCCCccc
Q 005789 41 RPVSAVKELVENSLDAD-ATSINVVVKDGGLKLIQVSDDGHGIRYED 86 (677)
Q Consensus 41 ~p~~~vkELveNSiDAg-At~I~V~i~~~g~~~i~V~DNG~GI~~~d 86 (677)
....++.||+.||+.++ ++.|.|.+...+.-.|+|.|||.||++++
T Consensus 43 ~l~~il~nll~NA~k~~~~~~i~i~~~~~~~~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAASTLTVRVKVDDDLCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEEESSEEEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEEcCCEEEEEecCCCCCCccc
Confidence 36788999999999976 78899988643326799999999999765
No 56
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.56 E-value=0.00011 Score=80.29 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhhCCCC----------ceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCCc
Q 005789 42 PVSAVKELVENSLDADAT----------SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (677)
Q Consensus 42 p~~~vkELveNSiDAgAt----------~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (677)
+..++.+||.||+.|... .|.|.+.. ++.-.|+|.|||.||++++++.+|.+|.+.+-
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~ 322 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAP 322 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTC---
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCcccccCC
Confidence 678999999999998643 68998864 34457999999999999999999999998764
No 57
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=97.56 E-value=7.3e-05 Score=78.08 Aligned_cols=58 Identities=21% Similarity=0.159 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHhhhhCC--CCceEEEEe-eCCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 41 RPVSAVKELVENSLDAD--ATSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 41 ~p~~~vkELveNSiDAg--At~I~V~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
.+..++.+||.||+++. +..|.|.+. .++.-.|.|.|||.||++++++.+|.+|.|+|
T Consensus 244 ~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~ 304 (349)
T 3a0r_A 244 RIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK 304 (349)
T ss_dssp HHHHHHHHHHTHHHHTTCTTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTTTSSSCCCC-
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEEEecCCEEEEEEEECCCCCChHHHhhcCCCCccCC
Confidence 46789999999999986 578888886 35555799999999999999999999999887
No 58
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.49 E-value=0.00016 Score=78.22 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHhhhhCCCC---------ceEEEEee-CCeeEEEEEeCCCCCCcccHhhhhhcccCCCc
Q 005789 41 RPVSAVKELVENSLDADAT---------SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (677)
Q Consensus 41 ~p~~~vkELveNSiDAgAt---------~I~V~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (677)
....++.+||.||+.|... .|.|.+.. ++.-.|+|.|||.||++++++.+|.+|.+.+-
T Consensus 231 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~ 299 (394)
T 2btz_A 231 HLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAP 299 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCC
Confidence 3678999999999997532 49998864 34457999999999999999999999988764
No 59
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.42 E-value=0.00028 Score=68.80 Aligned_cols=46 Identities=28% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhhhC-CCCceEEEEe-eCCeeEEEEEeCCCCCCcccH
Q 005789 42 PVSAVKELVENSLDA-DATSINVVVK-DGGLKLIQVSDDGHGIRYEDL 87 (677)
Q Consensus 42 p~~~vkELveNSiDA-gAt~I~V~i~-~~g~~~i~V~DNG~GI~~~dl 87 (677)
...++.||+.||+.+ +++.|.|.+. .++.-.|.|.|||.||+++++
T Consensus 131 l~~il~nll~Na~k~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 456899999999995 4678888885 455557999999999998865
No 60
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.30 E-value=0.00063 Score=60.28 Aligned_cols=45 Identities=29% Similarity=0.371 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHhhhhCC-CCceEEEEee-CCeeEEEEEeCCCCCCccc
Q 005789 41 RPVSAVKELVENSLDAD-ATSINVVVKD-GGLKLIQVSDDGHGIRYED 86 (677)
Q Consensus 41 ~p~~~vkELveNSiDAg-At~I~V~i~~-~g~~~i~V~DNG~GI~~~d 86 (677)
....++.||+.||+.++ ++.|.|.+.. ++ -.|+|.|||.||++++
T Consensus 39 ~l~~il~nll~Na~k~~~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 39 HAEAVLREAVSNAVRHANATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 35678999999999965 5688888853 33 5799999999999775
No 61
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=96.55 E-value=0.0043 Score=62.44 Aligned_cols=58 Identities=21% Similarity=0.072 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhhhCCC--CceEEEEe-eCCeeEEEEEeCCCC--CCcccHhhhhhcccCCCc
Q 005789 42 PVSAVKELVENSLDADA--TSINVVVK-DGGLKLIQVSDDGHG--IRYEDLPILCERHTTSKL 99 (677)
Q Consensus 42 p~~~vkELveNSiDAgA--t~I~V~i~-~~g~~~i~V~DNG~G--I~~~dl~~~~~r~~TSK~ 99 (677)
..+++-.|+.||++|-. ..|.|.+. .++...|+|.|+|.| |+++.++.+|.++.++|.
T Consensus 147 ~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~~ 209 (247)
T 4fpp_A 147 SSRAVLNIAQIAASALPAGGVATVKGVAADGRFSIIADAKGPRARLRPEVLAGLKGEPLAEGL 209 (247)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCCC
Confidence 46789999999999853 46888775 456667999999988 556667777877777663
No 62
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=93.85 E-value=0.13 Score=55.53 Aligned_cols=48 Identities=27% Similarity=0.248 Sum_probs=36.1
Q ss_pred cccCHHHHHHHHHHhhhhCC-----CCceEEEEee--CCeeEEEEEeCCCCCCcc
Q 005789 38 VIQRPVSAVKELVENSLDAD-----ATSINVVVKD--GGLKLIQVSDDGHGIRYE 85 (677)
Q Consensus 38 vI~~p~~~vkELveNSiDAg-----At~I~V~i~~--~g~~~i~V~DNG~GI~~~ 85 (677)
.+....-+|.||+.||+..+ ...|.|.+.. ++.-.|+|.|+|.|+++.
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC
Confidence 34567789999999999986 6789998864 345579999999999865
No 63
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=91.13 E-value=0.16 Score=49.52 Aligned_cols=47 Identities=6% Similarity=0.076 Sum_probs=31.4
Q ss_pred HHHHHhhhhC--------CCCceEEEEeeC---CeeEEEEEeCCCCCCcccHhhhhhc
Q 005789 47 KELVENSLDA--------DATSINVVVKDG---GLKLIQVSDDGHGIRYEDLPILCER 93 (677)
Q Consensus 47 kELveNSiDA--------gAt~I~V~i~~~---g~~~i~V~DNG~GI~~~dl~~~~~r 93 (677)
..|++|+++| +-..|.|.+... +.-.|.|.|+|+||+.+.+..+|+.
T Consensus 111 gnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if~~ 168 (192)
T 1ixm_A 111 AKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQN 168 (192)
T ss_dssp HHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC-----
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHHhC
Confidence 4456555554 246789988753 5457999999999999988888764
No 64
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.08 E-value=16 Score=31.54 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhcc
Q 005789 598 IPEFVLCLGNDVDWEDEKCCFQAIAAALGNFY 629 (677)
Q Consensus 598 Lp~fl~~La~~v~w~~E~~cf~~i~r~lA~fy 629 (677)
-|+++.||..+---..|+.||..|+.++|.+=
T Consensus 29 kpEL~~RL~kdGl~~~d~~~l~~iL~eVa~~~ 60 (100)
T 2e5n_A 29 KPELLARLQKDGVNQKDKNSLGAILQQVANLN 60 (100)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEE
T ss_pred cHHHHHHHHHccCCHHHHHHHHHHHHHHHhcC
Confidence 39999999987666789999999999999997
No 65
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1, phosphotyrosine binding domain, PTB, TNS2, KIAA1075, struct genomics, PSI-2; 1.80A {Homo sapiens} SCOP: b.55.1.2 PDB: 2loz_A 2dkq_A
Probab=27.89 E-value=22 Score=33.17 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhhCCCCceEEEEeeCCeeEEEEEeCCCCCCcccHhhhhhcccCCC
Q 005789 43 VSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (677)
Q Consensus 43 ~~~vkELveNSiDAgAt~I~V~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (677)
..||+++++-+--.-++.|.+.|...| |+++||-. .+.|.||+.-+
T Consensus 36 ~kAv~~~l~~~~~~~~t~V~fkVS~qG---ItLtD~~r-------K~FfrrHypl~ 81 (157)
T 3hqc_A 36 ARASSAALSCSPRPTPAVVHFKVSAQG---ITLTDNQR-------KLFFRRHYPVN 81 (157)
T ss_dssp HHHHHHHHHCC---CCEEEEEEEETTE---EEEEEEET-------TEEEEEEEEGG
T ss_pred HHHHHHHHhcCCCCCCeEEEEEEeCCC---ceEEeccc-------ceeehhcCccc
Confidence 345566655332234667777777777 78999864 33456665433
No 66
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=26.54 E-value=45 Score=28.16 Aligned_cols=29 Identities=17% Similarity=0.408 Sum_probs=21.7
Q ss_pred hhhCCCCceEEEEe-eCC-eeEEEEEeCCCC
Q 005789 53 SLDADATSINVVVK-DGG-LKLIQVSDDGHG 81 (677)
Q Consensus 53 SiDAgAt~I~V~i~-~~g-~~~i~V~DNG~G 81 (677)
+-|||...+.|.|. .+| ...++|.|||.|
T Consensus 33 ~~~aG~~~l~v~i~~~~g~~~~~~v~d~~dG 63 (100)
T 3rgh_A 33 CSSAGSAELTIEICSEAGLPAEVYIQDHGDG 63 (100)
T ss_dssp CTTSCSCCEEEEEECTTSCBCEEEEEECSSS
T ss_pred ECCCCCceEEEEEECCCCCEeEEEEEeCCCC
Confidence 34688889999995 233 346899999998
No 67
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A
Probab=26.22 E-value=61 Score=26.89 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=21.4
Q ss_pred hhhCCCCceEEEEeeCCeeEEEEEeCCCCC
Q 005789 53 SLDADATSINVVVKDGGLKLIQVSDDGHGI 82 (677)
Q Consensus 53 SiDAgAt~I~V~i~~~g~~~i~V~DNG~GI 82 (677)
+-|||...+.|.|.......++|.||+.|.
T Consensus 28 ~~dag~~~~~v~v~gp~~~~~~v~d~~dGt 57 (94)
T 2w0p_A 28 TREAGAGGLAIAVEGPSKAEISFEDRKDGS 57 (94)
T ss_dssp CGGGCSCCEEEEEEESSCCEEEEEECTTSC
T ss_pred EcCCCCCcEEEEEECCCCCeEEEEECCCCE
Confidence 356788888888864333357899999884
No 68
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=25.61 E-value=24 Score=30.60 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhcc
Q 005789 599 PEFVLCLGNDVDWEDEKCCFQAIAAALGNFY 629 (677)
Q Consensus 599 p~fl~~La~~v~w~~E~~cf~~i~r~lA~fy 629 (677)
|+++.||..+---..|+.||..|+.++|.+=
T Consensus 29 ~EL~~RL~kdGl~~~d~~~l~~iL~eVA~~~ 59 (104)
T 2doa_A 29 AELLLRLQKDGLTQADKDALDGLLQQVANMS 59 (104)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHSSEEC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 8999999987655779999999999999986
No 69
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Probab=22.12 E-value=66 Score=26.79 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=21.1
Q ss_pred hhhCCCCceEEEEeeCCeeEEEEEeCCCCC
Q 005789 53 SLDADATSINVVVKDGGLKLIQVSDDGHGI 82 (677)
Q Consensus 53 SiDAgAt~I~V~i~~~g~~~i~V~DNG~GI 82 (677)
+-|||...+.|.|.......++|.|||.|.
T Consensus 31 t~dag~~~l~v~v~~p~~~~~~v~d~~dGt 60 (97)
T 2bp3_A 31 TKDAGEGGLSLAIEGPSKAEISCTDNQDGT 60 (97)
T ss_dssp CTTCCSEEEEEEEEESSCCEEEEEECSSSE
T ss_pred ECCCCCCcEEEEEECCCCCEEEEEECCCCE
Confidence 457777788888864333357889999883
No 70
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.90 E-value=58 Score=27.66 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=22.3
Q ss_pred hhhCCCCceEEEEeeCCeeEEEEEeCCCCC
Q 005789 53 SLDADATSINVVVKDGGLKLIQVSDDGHGI 82 (677)
Q Consensus 53 SiDAgAt~I~V~i~~~g~~~i~V~DNG~GI 82 (677)
+.|||...+.|.|.......++|.||+.|.
T Consensus 36 t~dag~~~l~v~v~~p~~~~v~v~d~~dGt 65 (105)
T 2ee6_A 36 TREAGAGGLSIAVEGPSKAEITFDDHKNGS 65 (105)
T ss_dssp CSSSCCCCEEEEEESSSCEEEEECCCCSSC
T ss_pred ECCCCCCcEEEEEECCCCCEEEEEECCCCE
Confidence 457788889999874433457899999884
Done!