BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005790
(677 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AAR G+L+++K LLE DV +DK G T LH AA G +EVVK L+ + +N+
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
D G TPLH+AA G VV+ L+L + + ++ K+ +G T LH A
Sbjct: 65 DKNGRTPLHLAARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLA 108
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 17/139 (12%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G T LH AA G +EVVK L+ + +N+ D G TPLH+AA G VV+ L+L + +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK-LLLEAGAD 60
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
++ K+ +G T LH A VKL+ + + +NAK+ +GRT L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEV-------VKLLLEAGAD--------VNAKDKNGRTPL 105
Query: 349 HMAITGNVHLELVQLLMSA 367
H+A N HLE+V+LL+ A
Sbjct: 106 HLA-ARNGHLEVVKLLLEA 123
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 49/121 (40%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 168 SPRFLTAKGGELEE---HIEEIPSVYKWEMMNRA-VHAAARGGNLKILKELLENCTDVLT 223
+P L A+ G LE +E V + R +H AAR G+L+++K LLE DV
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-N 62
Query: 224 YRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL 283
+DK G T LH AA G +EVVK L+ + +N+ D G TPLH+AA G VV+ L+
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Query: 284 A 284
A
Sbjct: 123 A 123
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 64/187 (34%), Positives = 82/187 (43%), Gaps = 52/187 (27%)
Query: 202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ 261
AA GN +K+L+EN DV D G T LH AA G EVVK LI+ +N+ D
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKL 321
G TPLH AA G VV+ LI
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGAD---------------------------------- 95
Query: 322 MKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMT 381
+NAK++DGRT LH A N H E+V+LL+S + +VN D+DG T
Sbjct: 96 ---------------VNAKDSDGRTPLHHA-AENGHKEVVKLLISKGA-DVNTSDSDGRT 138
Query: 382 TLDLLKQ 388
LDL ++
Sbjct: 139 PLDLARE 145
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA G+ +++K L+ DV +D G T LH AA G EVVK LI+ +N++
Sbjct: 74 LHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS 132
Query: 259 DHQGNTPLHIAAYRGQPAVVEAL 281
D G TPL +A G VV+ L
Sbjct: 133 DSDGRTPLDLAREHGNEEVVKLL 155
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 61/187 (32%), Positives = 81/187 (43%), Gaps = 52/187 (27%)
Query: 202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ 261
AA GN +K+L+EN DV D G T LH AA G E+VK LI+ +N+ D
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKL 321
G TPLH AA G +V+ LI
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGAD---------------------------------- 95
Query: 322 MKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMT 381
+NAK++DGRT LH A H E+V+LL+S + +VN D+DG T
Sbjct: 96 ---------------VNAKDSDGRTPLHYAAKEG-HKEIVKLLISKGA-DVNTSDSDGRT 138
Query: 382 TLDLLKQ 388
LDL ++
Sbjct: 139 PLDLARE 145
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA+ G+ +I+K L+ DV +D G T LH AA G E+VK LI+ +N+
Sbjct: 41 LHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 99
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
D G TPLH AA G +V+ L+++ + ++ ++ G T L A
Sbjct: 100 DSDGRTPLHYAAKEGHKEIVK-LLISKGADVNTSDSDGRTPLDLA 143
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 18/154 (11%)
Query: 236 AAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTS 295
AA G + VKDL+ + +N++D G TPLH+AA G VV+ L+L+ + + K++
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVK-LLLSQGADPNAKDSD 69
Query: 296 GETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGN 355
G+T LH A + L + Q A NAK++DG+T LH+A N
Sbjct: 70 GKTPLHLAAENGHKEVVKLL------LSQGAD---------PNAKDSDGKTPLHLAAE-N 113
Query: 356 VHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQR 389
H E+V+LL+S + N D+DG T LDL ++
Sbjct: 114 GHKEVVKLLLSQ-GADPNTSDSDGRTPLDLAREH 146
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 87/165 (52%), Gaps = 22/165 (13%)
Query: 202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ 261
AA GN +K+LLEN DV D G T LH AA G EVVK L++ N+ D
Sbjct: 11 AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD 69
Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLH-SAVSGFQTYAFRRLDRQVK 320
G TPLH+AA G VV+ L+L+ + + K++ G+T LH +A +G + VK
Sbjct: 70 GKTPLHLAAENGHKEVVK-LLLSQGADPNAKDSDGKTPLHLAAENGHKEV--------VK 120
Query: 321 LMKQLASGQIFNMEDIINAKNNDGRTALHMAIT-GNVHLELVQLL 364
L+ L+ G N D +DGRT L +A GN E+V+LL
Sbjct: 121 LL--LSQGADPNTSD------SDGRTPLDLAREHGNE--EVVKLL 155
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA G+ +++K LL D +D G T LH AA G EVVK L++ N+
Sbjct: 41 LHLAAENGHKEVVKLLLSQGADP-NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 99
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQ 318
D G TPLH+AA G VV+ L+L+ + + ++ G T L A + L++Q
Sbjct: 100 DSDGKTPLHLAAENGHKEVVK-LLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 84/154 (54%), Gaps = 20/154 (12%)
Query: 236 AAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTS 295
AA G + VKDL+ + N++D G TPLH AA G +V+ L+L+ + + K++
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVK-LLLSKGADPNAKDSD 69
Query: 296 GETFLH-SAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITG 354
G T LH +A +G + VKL+ L+ G NAK++DGRT LH A
Sbjct: 70 GRTPLHYAAENGHKEI--------VKLL--LSKGAD------PNAKDSDGRTPLHYAAE- 112
Query: 355 NVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQ 388
N H E+V+LL+S + N D+DG T LDL ++
Sbjct: 113 NGHKEIVKLLLSK-GADPNTSDSDGRTPLDLARE 145
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 84/165 (50%), Gaps = 22/165 (13%)
Query: 202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ 261
AA GN +K+LLEN D D G T LH AA G E+VK L++ N+ D
Sbjct: 11 AAENGNKDRVKDLLENGADP-NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD 69
Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLH-SAVSGFQTYAFRRLDRQVK 320
G TPLH AA G +V+ L+L+ + + K++ G T LH +A +G + VK
Sbjct: 70 GRTPLHYAAENGHKEIVK-LLLSKGADPNAKDSDGRTPLHYAAENGHKEI--------VK 120
Query: 321 LMKQLASGQIFNMEDIINAKNNDGRTALHMAIT-GNVHLELVQLL 364
L+ L+ G N D +DGRT L +A GN E+V+LL
Sbjct: 121 LL--LSKGADPNTSD------SDGRTPLDLAREHGNE--EIVKLL 155
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA G+ +I+K LL D +D G T LH AA G E+VK L++ N+
Sbjct: 41 LHYAAENGHKEIVKLLLSKGADP-NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 99
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQ 318
D G TPLH AA G +V+ L+L+ + + ++ G T L A + L++Q
Sbjct: 100 DSDGRTPLHYAAENGHKEIVK-LLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AAR G+L+++K LLE DV +DK G T LH AA G +EVVK L+ + +N+
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILA 284
D G TPLH+AA G VV+ L+ A
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 58/139 (41%), Gaps = 50/139 (35%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G T LH AA G +EVVK L+ + +N+ D G TPLH+AA G VV+ L+ A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
+NAK+ +GRT L
Sbjct: 61 ------------------------------------------------VNAKDKNGRTPL 72
Query: 349 HMAITGNVHLELVQLLMSA 367
H+A N HLE+V+LL+ A
Sbjct: 73 HLA-ARNGHLEVVKLLLEA 90
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
+NAK+ +GRT LH+A N HLE+V+LL+ A + +VN +D +G T L L
Sbjct: 28 VNAKDKNGRTPLHLA-ARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHL 74
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 112/269 (41%), Gaps = 52/269 (19%)
Query: 168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNRA------------VHAAARGGNLKILKELL 215
+P + A+ G E V K+ + N+A +H AAR G+ ++K LL
Sbjct: 49 TPLHMAARAGHTE--------VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL 100
Query: 216 ENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQP 275
EN + G T LH AA G VE V L+ +G TPLH+AA G+
Sbjct: 101 ENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV 159
Query: 276 AVVEALILASPSMISVKNTSGETFLHSAV-----------------------SGFQTYAF 312
V E L+L + + +G T LH AV +G+
Sbjct: 160 RVAE-LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 218
Query: 313 RRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINV 372
QV++ + L NA++ G T LH+A H E+V LL+S + N
Sbjct: 219 AAKQNQVEVARSL-----LQYGGSANAESVQGVTPLHLAAQEG-HAEMVALLLSKQA-NG 271
Query: 373 NVRDNDGMTTLDLLKQRPQSASSDILIRH 401
N+ + G+T L L+ Q +D+LI+H
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKH 300
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 145/356 (40%), Gaps = 79/356 (22%)
Query: 112 LYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRF 171
L+ AA AG K LL +N V + + T + + AAR + ++ +L+ + +P
Sbjct: 51 LHMAARAGHTEVAKYLL-QNKAKVNAKAKDDQTPL-HCAARIGHTNMVKLLLENNANPNL 108
Query: 172 LTAKG------GELEEHIEEIPSVYKWE-----MMNRA---VHAAARGGNLKILKELLE- 216
T G E H+E + ++ + E M + +H AA+ G +++ + LLE
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER 168
Query: 217 ---------------------NCTDVLTYRDKQGS----------TILHAAAGRGQVEVV 245
N D++ +G T LH AA + QVEV
Sbjct: 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA 228
Query: 246 KDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305
+ L+ N+ QG TPLH+AA G +V AL+L+ + ++ N SG T LH
Sbjct: 229 RSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV-ALLLSKQANGNLGNKSGLTPLHLVAQ 287
Query: 306 -------------GFQTYAFRRLDR----------QVKLMKQLASGQIFNMEDIINAKNN 342
G A R+ +KL+K L Q +NAK
Sbjct: 288 EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-----VNAKTK 342
Query: 343 DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDIL 398
G + LH A H ++V LL+ + + N +DG T L + K+ + +D+L
Sbjct: 343 LGYSPLHQAAQQG-HTDIVTLLLKNGA-SPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 31/190 (16%)
Query: 199 VHAAARGGNLKILKELLE-----NCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFD 253
+H A+ G+L I+K LL+ N ++V + T LH AA G EV K L+ +
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNV------KVETPLHMAARAGHTEVAKYLLQNKA 71
Query: 254 IINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLH-SAVSGFQTYAF 312
+N+ TPLH AA G +V+ L+L + + ++ T+G T LH +A G
Sbjct: 72 KVNAKAKDDQTPLHCAARIGHTNMVK-LLLENNANPNLATTAGHTPLHIAAREGHVETVL 130
Query: 313 RRLDRQVK-----------LMKQLASGQIFNMEDII------NAKNNDGRTALHMAITGN 355
L+++ L G++ E ++ NA +G T LH+A+ N
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 190
Query: 356 VHLELVQLLM 365
+L++V+LL+
Sbjct: 191 -NLDIVKLLL 199
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 231 TILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMIS 290
T LH A+ G + +VK+L+ N ++ + TPLH+AA G V + L L + + ++
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL-LQNKAKVN 74
Query: 291 VKNTSGETFLHSA 303
K +T LH A
Sbjct: 75 AKAKDDQTPLHCA 87
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/100 (40%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA G+L+I++ LL+N DV +D G T LH AA RG +E+V+ L+ + +N++
Sbjct: 51 LHLAAHFGHLEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNAS 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGET 298
D G TPLH+AA RG +VE L L + + ++ ++ G+T
Sbjct: 110 DSHGFTPLHLAAKRGHLEIVEVL-LKNGADVNAQDKFGKT 148
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 19/172 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV RD G T LH AA G +E+V+ L+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
+N+ D G TPLH+AA RG +VE L L + + ++ ++ G T LH A
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVL-LKNGADVNASDSHGFTPLHLAAKR------GH 125
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
L+ L+K A +NA++ G+TA ++I GN L E++Q L
Sbjct: 126 LEIVEVLLKNGAD---------VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 52/173 (30%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L AA GQ + V+ L+A+ +N+ D G TPLH+AA+ G +VE L+
Sbjct: 15 GKKLLEAARA-GQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLL------ 67
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
KN + +NAK++ G T L
Sbjct: 68 ---KNGAD----------------------------------------VNAKDSLGVTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
H+A HLE+V++L+ + +VN D+ G T L L +R ++L+++
Sbjct: 85 HLAARRG-HLEIVEVLLKNGA-DVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AAR G+L+I++ LL+ DV +DK G T LH AA G +E+V+ L+ + +N+
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 97
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGET 298
D G TPLH+AA G +VE L+ A ++ ++ G+T
Sbjct: 98 DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKT 136
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV +DK G T LH AA G +E+V+ L+ +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
+N+ D G TPLH+AA G +VE L+ A ++ K+ G T LH A
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLA 108
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 56/185 (30%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L AA GQ + V+ L+A+ +N+ D G TPLH+AA G +VE L+ A
Sbjct: 3 GKKLLEAARA-GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD- 60
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
+NAK+ DG T L
Sbjct: 61 ------------------------------------------------VNAKDKDGYTPL 72
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGI 408
H+A HLE+V++L+ A + +VN +D DG T L L + ++L++ AG
Sbjct: 73 HLAAREG-HLEIVEVLLKAGA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLK----AGAD 126
Query: 409 FGCQD 413
QD
Sbjct: 127 VNAQD 131
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA G+L+I++ LL+N DV Y D GST LH AA G +E+V+ L+ + +N+
Sbjct: 51 LHLAAYWGHLEIVEVLLKNGADVNAY-DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAK 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEALI 282
D G TPLH+AA RG +VE L+
Sbjct: 110 DDNGITPLHLAANRGHLEIVEVLL 133
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 19/172 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV D G T LH AA G +E+V+ L+ +
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADV-NAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
+N+ D G+TPLH+AA+ G +VE L L + + ++ K+ +G T LH A +
Sbjct: 73 VNAYDTLGSTPLHLAAHFGHLEIVEVL-LKNGADVNAKDDNGITPLHLAANR------GH 125
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
L+ L+K A +NA++ G+TA ++I GN L E++Q L
Sbjct: 126 LEIVEVLLKYGAD---------VNAQDKFGKTAFDISINNGNEDLAEILQKL 168
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 52/173 (30%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L AA G+ + V+ L+A+ +N+ D G TPLH+AAY G +VE L+
Sbjct: 15 GKKLLEAARA-GRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLL------ 67
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
KN + +NA + G T L
Sbjct: 68 ---KNGAD----------------------------------------VNAYDTLGSTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
H+A HLE+V++L+ + +VN +D++G+T L L R ++L+++
Sbjct: 85 HLAAHFG-HLEIVEVLLKNGA-DVNAKDDNGITPLHLAANRGHLEIVEVLLKY 135
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA+ G+L+I++ LL+ DV + D G+T LH AA G +E+V+ L+ +N+
Sbjct: 51 LHLAAKTGHLEIVEVLLKYGADVNAW-DNYGATPLHLAADNGHLEIVEVLLKHGADVNAK 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEALI 282
D++G TPLH+AAY G +VE L+
Sbjct: 110 DYEGFTPLHLAAYDGHLEIVEVLL 133
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 19/172 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV D G T LH AA G +E+V+ L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
+N+ D+ G TPLH+AA G +VE L L + ++ K+ G T LH A
Sbjct: 73 VNAWDNYGATPLHLAADNGHLEIVEVL-LKHGADVNAKDYEGFTPLHLAA---------- 121
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
D +++++ L +NA++ G+TA ++I GN L E++Q L
Sbjct: 122 YDGHLEIVEVL-----LKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 337 INAKNNDGRTALHMAI-TGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASS 395
+NA + G T LH+A TG HLE+V++L+ + +VN DN G T L L
Sbjct: 40 VNATDWLGHTPLHLAAKTG--HLEIVEVLLKYGA-DVNAWDNYGATPLHLAADNGHLEIV 96
Query: 396 DILIRHLISAGGIFGCQDY 414
++L++H G +DY
Sbjct: 97 EVLLKH----GADVNAKDY 111
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 14/115 (12%)
Query: 170 RFLTAKGGEL--EEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDK 227
R L A G ++ +H+ P +H AA G+L+I++ LL+N DV D
Sbjct: 31 RILMANGADVNASDHVGWTP-----------LHLAAYFGHLEIVEVLLKNGADV-NADDS 78
Query: 228 QGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALI 282
G T LH AA RG +EVV+ L+ + +N+ DH G TPLH+AA G +VE L+
Sbjct: 79 LGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLL 133
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 19/172 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV D G T LH AA G +E+V+ L+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NASDHVGWTPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
+N+ D G TPLH+AA RG VVE L L + + ++ + +G T LH A +
Sbjct: 73 VNADDSLGVTPLHLAADRGHLEVVEVL-LKNGADVNANDHNGFTPLHLAAN------IGH 125
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
L+ L+K A +NA++ G+TA ++I GN L E++Q L
Sbjct: 126 LEIVEVLLKHGAD---------VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 52/173 (30%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L AA GQ + V+ L+A+ +N++DH G TPLH+AAY G +VE L+
Sbjct: 15 GKKLLEAARA-GQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL------ 67
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
KN + +NA ++ G T L
Sbjct: 68 ---KNGAD----------------------------------------VNADDSLGVTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
H+A HLE+V++L+ + +VN D++G T L L ++L++H
Sbjct: 85 HLA-ADRGHLEVVEVLLKNGA-DVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AAR G+L+I++ LL+ DV +DK G T LH AA G +E+V+ L+ + +N+
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 97
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGET 298
D G TPLH+AA G +VE L+ A ++ ++ G+T
Sbjct: 98 DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKT 136
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV +DK G T LH AA G +E+V+ L+ +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
+N+ D G TPLH+AA G +VE L+ A ++ K+ G T LH A
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLA 108
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 56/185 (30%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L AA GQ + V+ L+A+ +N+ D G TPLH+AA G +VE L+ A
Sbjct: 3 GKKLLEAARA-GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD- 60
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
+NAK+ DG T L
Sbjct: 61 ------------------------------------------------VNAKDKDGYTPL 72
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGI 408
H+A HLE+V++L+ A + +VN +D DG T L L + ++L++ AG
Sbjct: 73 HLAAREG-HLEIVEVLLKAGA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLK----AGAD 126
Query: 409 FGCQD 413
QD
Sbjct: 127 VNAQD 131
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AAR G+L+I++ LL+ DV +DK G T LH AA G +E+V+ L+ + +N+
Sbjct: 51 LHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGET 298
D G TPLH+AA G +VE L+ A ++ ++ G+T
Sbjct: 110 DKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKT 148
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV +DK G T LH AA G +E+V+ L+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
+N+ D G TPLH+AA G +VE L+ A ++ K+ G T LH A
Sbjct: 73 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLA 120
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 52/191 (27%), Positives = 78/191 (40%), Gaps = 56/191 (29%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L AA GQ + V+ L+A+ +N+ D G TPLH+AA G +VE L+ A
Sbjct: 15 GKKLLEAARA-GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD- 72
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
+NAK+ DG T L
Sbjct: 73 ------------------------------------------------VNAKDKDGYTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGI 408
H+A HLE+V++L+ A + +VN +D DG T L L + ++L++ AG
Sbjct: 85 HLAAREG-HLEIVEVLLKAGA-DVNAKDKDGYTPLHLAAREGHLEIVEVLLK----AGAD 138
Query: 409 FGCQDYSARRA 419
QD + A
Sbjct: 139 VNAQDKFGKTA 149
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AAR G+L+I++ LL+N DV D GST LH AA RG +E+V+ L+ +N+
Sbjct: 51 LHLAARVGHLEIVEVLLKNGADV-NALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNAD 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEALI 282
D G+TPLH+AA G +VE L+
Sbjct: 110 DTIGSTPLHLAADTGHLEIVEVLL 133
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV D G T LH AA G +E+V+ L+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
+N+ D G+TPLH+AA RG +VE L L + ++ +T G T LH A
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVL-LKYGADVNADDTIGSTPLHLA 120
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 83/157 (52%), Gaps = 19/157 (12%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L AA GQ + V+ L+A+ +N+ D QG+TPLH+AA+ G P +VE L L +
Sbjct: 15 GKKLLEAARA-GQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVL-LKHGAD 72
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
++ ++T G T LH A L+ L+K A +NA++ G T L
Sbjct: 73 VNARDTDGWTPLHLAADN------GHLEIVEVLLKYGAD---------VNAQDAYGLTPL 117
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
H+A HLE+V++L+ + +VN +D G T D+
Sbjct: 118 HLA-ADRGHLEIVEVLLKHGA-DVNAQDKFGKTAFDI 152
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 170 RFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQG 229
R L A G ++ H ++ + +H AA G+ +I++ LL++ DV RD G
Sbjct: 31 RILMANGADVNAHDDQGST---------PLHLAAWIGHPEIVEVLLKHGADV-NARDTDG 80
Query: 230 STILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALI 282
T LH AA G +E+V+ L+ +N+ D G TPLH+AA RG +VE L+
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA G+L+I++ LL+ DV +D G T LH AA RG +E+V+ L+ +N+
Sbjct: 84 LHLAADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQ 142
Query: 259 DHQGNTPLHIAAYRGQPAVVEAL 281
D G T I+ G + E L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSD 396
+NA ++ G T LH+A H E+V++L+ + +VN RD DG T L L +
Sbjct: 40 VNAHDDQGSTPLHLAAWIG-HPEIVEVLLKHGA-DVNARDTDGWTPLHLAADNGHLEIVE 97
Query: 397 ILIRH 401
+L+++
Sbjct: 98 VLLKY 102
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H G+L+I++ LL+ DV DK G T LH AA RG +E+V+ L+ +N+
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEALI 282
D+QG TPLH+AA G +VE L+
Sbjct: 110 DYQGYTPLHLAAEDGHLEIVEVLL 133
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 19/172 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV D G T LH G +E+++ L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NANDWFGITPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
+N++D G TPLH+AAYRG +VE L L + ++ + G T LH A
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVL-LKYGADVNAMDYQGYTPLHLAAE--------- 122
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
D +++++ L +NA++ G+TA ++I GN L E++Q L
Sbjct: 123 -DGHLEIVEVL-----LKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 26/219 (11%)
Query: 201 AAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDH 260
AA G+ + + LLE D+ Y + G T LH A V++VK L+ + IN D+
Sbjct: 46 AACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104
Query: 261 QGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAV--------------SG 306
+G PLH AA G + E LI + + + N+ G+T L A G
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLI-SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163
Query: 307 FQTYAFRRLDRQVKL---MKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQL 363
A R+ + ++ L + L SG I D+ +AK+ G TALH+A + E+++L
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHI---NDVRHAKS--GGTALHVA-AAKGYTEVLKL 217
Query: 364 LMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHL 402
L+ A +VN++D DG T L + + IL+ +L
Sbjct: 218 LIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 227 KQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASP 286
K G T LH AA +G EV+K LI + +N D+ G TPLH AA+ G+ L+
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Query: 287 SMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLM 322
M +V N G+T A Y L ++ L+
Sbjct: 257 DMEAV-NKVGQTAFDVADEDILGY-LEELQKKQNLL 290
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
A+H AA G ++LK L++ DV +D G T LHAAA G+ E + L+ + + +
Sbjct: 202 ALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260
Query: 258 TDHQGNTPLHIA 269
+ G T +A
Sbjct: 261 VNKVGQTAFDVA 272
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA G+L+I++ LL+N DV D G T LH AA G +E+V+ L+ +N+
Sbjct: 51 LHLAASNGHLEIVEVLLKNGADV-NASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAY 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEALI 282
D+ G+TPLH+AA G +VE L+
Sbjct: 110 DNDGHTPLHLAAKYGHLEIVEVLL 133
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 19/170 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV D G T LH AA G +E+V+ L+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
+N++D G TPLH+AA G +VE L L + ++ + G T LH A +
Sbjct: 73 VNASDLTGITPLHLAAATGHLEIVEVL-LKHGADVNAYDNDGHTPLHLAAK------YGH 125
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQ 362
L+ L+K A +NA++ G+TA ++I GN L E++Q
Sbjct: 126 LEIVEVLLKHGAD---------VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 52/173 (30%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L AA GQ + V+ L+A+ +N+TD+ G TPLH+AA G +VE L+
Sbjct: 15 GKKLLEAARA-GQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLL------ 67
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
KN + +NA + G T L
Sbjct: 68 ---KNGAD----------------------------------------VNASDLTGITPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
H+A HLE+V++L+ + +VN DNDG T L L + ++L++H
Sbjct: 85 HLA-AATGHLEIVEVLLKHGA-DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 19/172 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV D G T LH AA +G +E+V+ L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
+N+ D G+TPLH+AA G +VE L L + + ++ +T G T LH A
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVL-LKNGADVNATDTYGFTPLHLAADA------GH 125
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
L+ L+K A +NA++ G+TA ++I GN L E++Q L
Sbjct: 126 LEIVEVLLKYGAD---------VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 164 DFAVSPRFLTAKGGELE------EHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLEN 217
D +P L A G LE +H ++ + K M + +H AA G+L+I++ LL+N
Sbjct: 45 DSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADK--MGDTPLHLAALYGHLEIVEVLLKN 102
Query: 218 CTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAV 277
DV D G T LH AA G +E+V+ L+ +N+ D G T I+ G +
Sbjct: 103 GADV-NATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 278 VEAL 281
E L
Sbjct: 162 AEIL 165
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA G L+I++ LL+N DV D G T LH AA G +E+V+ L+ +N+
Sbjct: 43 LHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAY 101
Query: 259 DHQGNTPLHIAAYRGQPAVVEALI 282
D G TPLH+AA GQ +VE L+
Sbjct: 102 DRAGWTPLHLAALSGQLEIVEVLL 125
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 193 EMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASF 252
++ + + AAA G + ++ + L+ N DV D G T LH AA GQ+E+V+ L+ +
Sbjct: 5 DLGKKLLEAAAAGQDDEV-RILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLLKNG 62
Query: 253 DIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLH-SAVSG 306
+N++D G TPLH+AAY G +VE L L + ++ + +G T LH +A+SG
Sbjct: 63 ADVNASDSAGITPLHLAAYDGHLEIVEVL-LKHGADVNAYDRAGWTPLHLAALSG 116
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 74/173 (42%), Gaps = 52/173 (30%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L AAA GQ + V+ L+A+ +N+TD G TPLH+AA GQ +VE L+
Sbjct: 7 GKKLLEAAAA-GQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL------ 59
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
KN + +NA ++ G T L
Sbjct: 60 ---KNGAD----------------------------------------VNASDSAGITPL 76
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
H+A HLE+V++L+ + +VN D G T L L Q ++L++H
Sbjct: 77 HLAAYDG-HLEIVEVLLKHGA-DVNAYDRAGWTPLHLAALSGQLEIVEVLLKH 127
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA G+L+I++ LL++ DV Y D+ G T LH AA GQ+E+V+ L+ +N+
Sbjct: 76 LHLAAYDGHLEIVEVLLKHGADVNAY-DRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQ 134
Query: 259 DHQGNTPLHIAAYRGQPAVVEAL 281
D G T I+ +GQ + E L
Sbjct: 135 DALGLTAFDISINQGQEDLAEIL 157
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 19/172 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV D G T LH AA G +E+V+ L+ +
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
+N+ DH G TPL +AA G +VE L L + + ++ + G T LH A F
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVL-LKNGADVNANDMEGHTPLHLAA------MFGH 125
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
L+ L+K A +NA++ G+TA ++I GN L E++Q L
Sbjct: 126 LEIVEVLLKNGAD---------VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA G+L+I++ LL N DV D G+T LH AA G +E+V+ L+ +N+
Sbjct: 39 LHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAK 97
Query: 259 DHQGNTPLHIAAYRGQPAVVEALI 282
D G TPL++AAY G +VE L+
Sbjct: 98 DATGITPLYLAAYWGHLEIVEVLL 121
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 19/170 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N D Y D G T LH AA G +E+V+ L+ +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADANAY-DHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
+N+ D G TPLH+AA G +VE L L + ++ K+ +G T L+ A +
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVL-LKYGADVNAKDATGITPLYLAAY------WGH 113
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQ 362
L+ L+K A +NA++ G+TA ++I GN L E++Q
Sbjct: 114 LEIVEVLLKHGAD---------VNAQDKFGKTAFDISIDIGNEDLAEILQ 154
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 19/172 (11%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ R + AAR G ++ L+ N DV D G+T LH AA G +E+V+ L+
Sbjct: 14 LGRKLLEAARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314
++++D G TPLH+AAY G +VE L L + + ++ ++ G T LH A +
Sbjct: 73 VDASDVFGYTPLHLAAYWGHLEIVEVL-LKNGADVNAMDSDGMTPLHLAAK------WGY 125
Query: 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
L+ L+K A +NA++ G+TA ++I GN L E++Q L
Sbjct: 126 LEIVEVLLKHGAD---------VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 52/173 (30%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L AA GQ + V+ L+A+ +N+ D+ G TPLH+AAY G +VE L
Sbjct: 15 GRKLLEAARA-GQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVL------- 66
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
L G + D+ G T L
Sbjct: 67 ------------------------------------LKHGADVDASDVF------GYTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
H+A HLE+V++L+ + +VN D+DGMT L L + ++L++H
Sbjct: 85 HLAAYWG-HLEIVEVLLKNGA-DVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 21/173 (12%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV D G T LH AA G +E+V+ L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLH-SAVSGFQTYAFR 313
+N+ D G+TPLH+AA G +VE L L + ++ +T G+T LH +A+ G
Sbjct: 73 VNAIDIMGSTPLHLAALIGHLEIVEVL-LKHGADVNAVDTWGDTPLHLAAIMG------- 124
Query: 314 RLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
L+ L+K A +NA++ G+TA ++I GN L E++Q L
Sbjct: 125 HLEIVEVLLKHGAD---------VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 166 AVSPRFLTAKGGELE------EHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCT 219
++P L A G LE +H ++ ++ M + +H AA G+L+I++ LL++
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAIDI--MGSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 220 DVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVE 279
DV D G T LH AA G +E+V+ L+ +N+ D G T I+ G + E
Sbjct: 105 DV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 280 AL 281
L
Sbjct: 164 IL 165
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 21/173 (12%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV D G T LH AA G +E+V+ L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLH-SAVSGFQTYAFR 313
+N+ D G+TPLH+AA G +VE L L + ++ +T G+T LH +A+ G
Sbjct: 73 VNAIDIXGSTPLHLAALIGHLEIVEVL-LKHGADVNAVDTWGDTPLHLAAIMG------- 124
Query: 314 RLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI-TGNVHL-ELVQLL 364
L+ L+K A +NA++ G+TA ++I GN L E++Q L
Sbjct: 125 HLEIVEVLLKHGAD---------VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 20/198 (10%)
Query: 203 ARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQG 262
A G L+ LKE + + T D+ T LH A G E+V+ L+ +N D G
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 263 NTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLM 322
+PLHIAA G+ +V+AL L + ++ N +G T LH A S R + V L+
Sbjct: 74 WSPLHIAASAGRDEIVKAL-LGKGAQVNAVNQNGCTPLHYAASK------NRHEIAVMLL 126
Query: 323 KQLASGQIFNMEDIINAKNNDGRTALHMAIT-GNVHLELVQLLMSAPSINVNVRDNDGMT 381
+ A+ +AK++ TA+H A GN L+++ +L+ + + N++D +G T
Sbjct: 127 EGGANP---------DAKDHYEATAMHRAAAKGN--LKMIHILLYYKA-STNIQDTEGNT 174
Query: 382 TLDLLKQRPQSASSDILI 399
L L + + +L+
Sbjct: 175 PLHLACDEERVEEAKLLV 192
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 27/164 (16%)
Query: 109 GWL-LYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAV 167
GW L+ AASAG VK LL K V + G T + YAA+++++ ++ ++ +
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRH-EIAVMLLEGGA 130
Query: 168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELL--ENCTDVLTYR 225
+P + ++H E A+H AA GNLK++ LL + T++ +
Sbjct: 131 NP--------DAKDHYEAT-----------AMHRAAAKGNLKMIHILLYYKASTNI---Q 168
Query: 226 DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIA 269
D +G+T LH A +VE K L++ I + + TPL +A
Sbjct: 169 DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 20/198 (10%)
Query: 203 ARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQG 262
A G L+ LKE + + T D+ T LH A G E+V+ L+ +N D G
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 74
Query: 263 NTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLM 322
+PLHIAA G+ +V+AL L + ++ N +G T LH A S R + V L+
Sbjct: 75 WSPLHIAASAGRDEIVKAL-LGKGAQVNAVNQNGCTPLHYAASK------NRHEIAVMLL 127
Query: 323 KQLASGQIFNMEDIINAKNNDGRTALH-MAITGNVHLELVQLLMSAPSINVNVRDNDGMT 381
+ A+ +AK++ TA+H A GN L+++ +L+ + + N++D +G T
Sbjct: 128 EGGANP---------DAKDHYEATAMHRAAAKGN--LKMIHILLYYKA-STNIQDTEGNT 175
Query: 382 TLDLLKQRPQSASSDILI 399
L L + + +L+
Sbjct: 176 PLHLACDEERVEEAKLLV 193
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 27/164 (16%)
Query: 109 GWL-LYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAV 167
GW L+ AASAG VK LL K V + G T + YAA+++++ ++ ++ +
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRH-EIAVMLLEGGA 131
Query: 168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELL--ENCTDVLTYR 225
+P + ++H E A+H AA GNLK++ LL + T++ +
Sbjct: 132 NP--------DAKDHYEAT-----------AMHRAAAKGNLKMIHILLYYKASTNI---Q 169
Query: 226 DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIA 269
D +G+T LH A +VE K L++ I + + TPL +A
Sbjct: 170 DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 186 IPSVY---KWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQV 242
IPS Y + E ++ +H AA+ GNL L+E L+N V DK GST L+ A G
Sbjct: 61 IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHK 119
Query: 243 EVVKDLIASFDI-INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKN 293
++V+ L +I +N + G+T LH AA++G +V+ L+LA + ++N
Sbjct: 120 DIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQ-LLLAKGARTDLRN 170
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 224 YRDKQGSTI---LHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEA 280
Y +Q +I LH AA RG + +++ + + +N D G+T L+ A + G +VE
Sbjct: 65 YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEX 124
Query: 281 LILASPSMISVKNTSGETFLHSAVSGFQTYA 311
L ++ +N G+T LH+A ++ YA
Sbjct: 125 LFTQPNIELNQQNKLGDTALHAAA--WKGYA 153
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDII 255
N +H AA+ G+ + +K+LL DV R K G+T LH AA G E+VK L+A +
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 256 NSTDHQGNTPLHIAAYRGQPAVVEAL 281
N+ GNTP H+A G +V+ L
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 227 KQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASP 286
K G+T LH AA G E VK L++ +N+ GNTPLH+AA G +V+ L+LA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK-LLLAKG 65
Query: 287 SMISVKNTSGETFLHSA 303
+ ++ ++ G T H A
Sbjct: 66 ADVNARSKDGNTPEHLA 82
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQ 388
+NA++ DG T LH+A N H E+V+LL+ A +VN R DG T L K+
Sbjct: 35 VNARSKDGNTPLHLA-AKNGHAEIVKLLL-AKGADVNARSKDGNTPEHLAKK 84
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDII 255
N +H AA+ G+ +I+K LL DV R K G+T H A G E+VK L A +
Sbjct: 43 NTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Query: 256 NS 257
N+
Sbjct: 102 NA 103
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 20/198 (10%)
Query: 203 ARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQG 262
A G L LKE + + T D+ T LH A G E+V+ L+ +N D G
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 263 NTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLM 322
+PLHIAA G+ +V+AL++ + +V N +G T LH A S R + V L+
Sbjct: 74 WSPLHIAASAGRDEIVKALLVKGAHVNAV-NQNGCTPLHYAASK------NRHEIAVMLL 126
Query: 323 KQLASGQIFNMEDIINAKNNDGRTALHMAIT-GNVHLELVQLLMSAPSINVNVRDNDGMT 381
+ A+ +AK++ TA+H A GN L++V +L+ + + N++D +G T
Sbjct: 127 EGGANP---------DAKDHYDATAMHRAAAKGN--LKMVHILLFYKA-STNIQDTEGNT 174
Query: 382 TLDLLKQRPQSASSDILI 399
L L + + L+
Sbjct: 175 PLHLACDEERVEEAKFLV 192
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 27/165 (16%)
Query: 108 GGWL-LYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFA 166
GW L+ AASAG VK LL K V + G T + YAA+++++ ++ ++ +
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRH-EIAVMLLEGG 129
Query: 167 VSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELL--ENCTDVLTY 224
+P + ++H + A+H AA GNLK++ LL + T++
Sbjct: 130 ANP--------DAKDHYDAT-----------AMHRAAAKGNLKMVHILLFYKASTNI--- 167
Query: 225 RDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIA 269
+D +G+T LH A +VE K L+ I + + TPL +A
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 225 RDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILA 284
+D +T +H AA +G +++V L+ N D +GNTPLH+A + V EA L
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC--DEERVEEAKFLV 192
Query: 285 SP-SMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNM 333
+ + I ++N +T L A G ++K+LA G+ +M
Sbjct: 193 TQGASIYIENKEEKTPLQVAKGGLGL-----------ILKRLAEGEEASM 231
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 120/255 (47%), Gaps = 30/255 (11%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA ++I++ LL++ DV +DK G LH A G EV + L+ +N+
Sbjct: 62 LHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM 120
Query: 259 DHQGNTPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGETFLHSAVS---------GF 307
D TPLH AA + + V L+ A P+++ N G++ + A + F
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV---NCHGKSAVDMAPTPELRERLTYEF 177
Query: 308 QTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKN-NDGRTALHMAITGNVHLELVQL--L 364
+ ++ + R+ L K + + +IIN K TALH A+ ++H + Q+ L
Sbjct: 178 KGHSLLQAAREADLAKVKKTLAL----EIINFKQPQSHETALHCAV-ASLHPKRKQVAEL 232
Query: 365 MSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH--LISAGGIFGCQDYSARRAIAS 422
+ NVN ++ D MT L + +R + ++L +H ++A G Q R A+A
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLG-QTALHRAALAG 291
Query: 423 HIK----MLGNGSSP 433
H++ +L GS P
Sbjct: 292 HLQTCRLLLSYGSDP 306
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA G+L+I++ LL++ DV D G T LH AA G +E+V+ L+ +N+
Sbjct: 51 LHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEALI 282
D G+TPLH+AA G +VE L+
Sbjct: 110 DMTGSTPLHLAADEGHLEIVEVLL 133
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV D G T LH AA G +E+V+ L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILIANGADV-NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
+++ D G TPLH+AA G +VE L L + ++ + +G T LH A
Sbjct: 73 VDAADVYGFTPLHLAAMTGHLEIVEVL-LKYGADVNAFDMTGSTPLHLA 120
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 20/198 (10%)
Query: 203 ARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQG 262
A G L LKE + + T D+ T LH A G E+V+ L+ +N D G
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 263 NTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLM 322
+PLHIAA G +V+AL++ + +V N +G T LH A S R + V L+
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASK------NRHEIAVMLL 126
Query: 323 KQLASGQIFNMEDIINAKNNDGRTALH-MAITGNVHLELVQLLMSAPSINVNVRDNDGMT 381
+ A+ +AK++ TA+H A GN L++V +L+ + + N++D +G T
Sbjct: 127 EGGANP---------DAKDHYDATAMHRAAAKGN--LKMVHILLFYKA-STNIQDTEGNT 174
Query: 382 TLDLLKQRPQSASSDILI 399
L L + + L+
Sbjct: 175 PLHLACDEERVEEAKFLV 192
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 27/165 (16%)
Query: 108 GGWL-LYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFA 166
GW L+ AASAG VK LL K V + G T + YAA+++++ ++ ++ +
Sbjct: 72 AGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRH-EIAVMLLEGG 129
Query: 167 VSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELL--ENCTDVLTY 224
+P + ++H + A+H AA GNLK++ LL + T++
Sbjct: 130 ANP--------DAKDHYDAT-----------AMHRAAAKGNLKMVHILLFYKASTNI--- 167
Query: 225 RDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIA 269
+D +G+T LH A +VE K L+ I + + TPL +A
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 225 RDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILA 284
+D +T +H AA +G +++V L+ N D +GNTPLH+A + V EA L
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC--DEERVEEAKFLV 192
Query: 285 SP-SMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNM 333
+ + I ++N +T L A G ++K+LA G+ +M
Sbjct: 193 TQGASIYIENKEEKTPLQVAKGGLGL-----------ILKRLAEGEEASM 231
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV D+ G T LH AA G +E+V+ L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
+N+ D+ G TPLH+AA RG +VE L+
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVLL 100
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA+ G+L+I++ LL+ DV D G T LH AA RG +E+V+ L+ +N+
Sbjct: 51 LHLAAQLGHLEIVEVLLKYGADV-NAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQ 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEAL 281
D G T I+ G + E L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSD 396
+NA + DG T LH+A HLE+V++L+ + +VN DN G+T L L R +
Sbjct: 40 VNALDEDGLTPLHLAAQLG-HLEIVEVLLKYGA-DVNAEDNFGITPLHLAAIRGHLEIVE 97
Query: 397 ILIRH 401
+L++H
Sbjct: 98 VLLKH 102
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + A R G ++ L+ N DV D G T LH AA RG +E+V+ L+
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
+N++D G TPLH+AA G +VE L+
Sbjct: 73 VNASDSWGRTPLHLAATVGHLEIVEVLL 100
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 52/157 (33%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L A GQ + V+ L+A+ +N+ D G TPLH+AA RG +VE L
Sbjct: 15 GKKLLEATRA-GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL------- 66
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
+K A +NA ++ GRT L
Sbjct: 67 ---------------------------------LKHGAD---------VNASDSWGRTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
H+A T HLE+V++L+ + +VN +D G T D+
Sbjct: 85 HLAATVG-HLEIVEVLLEYGA-DVNAQDKFGKTAFDI 119
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA+ G+L+I++ LL++ DV D G T LH AA G +E+V+ L+ +N+
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEAL 281
D G T I+ G + E L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV D++G+T LH AA +E+V+ L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
+N+ D+ G+TPLH+AA G +VE L+
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 52/157 (33%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L AA GQ + V+ L+A+ +N+ D +GNTPLH+AA +VE L
Sbjct: 15 GKKLLEAARA-GQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVL------- 66
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
+K A +NA +NDG T L
Sbjct: 67 ---------------------------------LKHGAD---------VNAHDNDGSTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
H+A HLE+V++L+ + +VN +D G T D+
Sbjct: 85 HLAALFG-HLEIVEVLLKHGA-DVNAQDKFGKTAFDI 119
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDII 255
N +H AA +L+I++ LL++ DV + D GST LH AA G +E+V+ L+ +
Sbjct: 48 NTPLHLAADYDHLEIVEVLLKHGADVNAH-DNDGSTPLHLAALFGHLEIVEVLLKHGADV 106
Query: 256 NSTDHQGNTPLHIAAYRGQPAVVEAL 281
N+ D G T I+ G + E L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + A R G ++ L+ N DV D G T LH AA RG +E+V+ L+
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
+N++D G TPLH+AA G +VE L+
Sbjct: 73 VNASDIWGRTPLHLAATVGHLEIVEVLL 100
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 63/157 (40%), Gaps = 52/157 (33%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L A GQ + V+ L+A+ +N+ D G TPLH+AA RG +VE L
Sbjct: 15 GKKLLEATRA-GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL------- 66
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
L G N DI GRT L
Sbjct: 67 ------------------------------------LKHGADVNASDIW------GRTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
H+A T HLE+V++L+ + +VN +D G T D+
Sbjct: 85 HLAATVG-HLEIVEVLLEYGA-DVNAQDKFGKTAFDI 119
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA+ G+L+I++ LL++ DV D G T LH AA G +E+V+ L+ +N+
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEAL 281
D G T I+ G + E L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 206 GNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP 265
GN +I + LL + +D+ G ++H AA GQ++ ++ L+ +N D++GN P
Sbjct: 48 GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 266 LHIAAYRGQPAVVEALILASPSMISVKNTSGET 298
LH+AA G VVE L+ + S + +N G+T
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIA-SFDIINS 257
+H AAR G L L+ LLE DV D +G+ LH AA G + VV+ L+ + +
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 258 TDHQGNTPLHIAAYRGQPAVVEAL 281
+H+G+T +A G+ VV +
Sbjct: 133 RNHKGDTACDLARLYGRNEVVSLM 156
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 22/157 (14%)
Query: 233 LHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMIS 290
L +AA RG +E + L+ + +N+ + G T L + G P + L+L A+P +
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL-- 65
Query: 291 VKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM 350
K+ +G +H A Q LD L++ A +N ++N+G LH+
Sbjct: 66 -KDRTGFAVIHDAARAGQ------LDTLQTLLEFQAD---------VNIEDNEGNLPLHL 109
Query: 351 AITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLK 387
A HL +V+ L+ + NV R++ G T DL +
Sbjct: 110 AAKEG-HLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H A R G +++ L+ + ++ T LH AA G ++V+ L+ IN+
Sbjct: 43 LHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 101
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQ 318
+ GN PLH A + GQ V E L+ A+ +++S+ N GE + A + + R ++
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLV-ANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160
Query: 319 VKLMKQLASGQIF 331
+ + ++ F
Sbjct: 161 GQNLNRIPYKDTF 173
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+ R GN ++ L+N + L D G + LH A G+ VV+ LI IN
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAV 304
+ +TPLH+AA G +V+ L L + I+ N G LH A
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKL-LQYKADINAVNEHGNVPLHYAC 113
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H A R G +++ L+ + ++ T LH AA G ++V+ L+ IN+
Sbjct: 38 LHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 96
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGE 297
+ GN PLH A + GQ V E L+ A+ +++S+ N GE
Sbjct: 97 NEHGNVPLHYACFWGQDQVAEDLV-ANGALVSICNKYGE 134
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 203 ARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQG 262
R GN ++ L+N + L D G + LH A G+ VV+ LI IN +
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 67
Query: 263 NTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAV 304
+TPLH+AA G +V+ L L + I+ N G LH A
Sbjct: 68 DTPLHLAASHGHRDIVQKL-LQYKADINAVNEHGNVPLHYAC 108
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + A R G ++ L+ N DV D G T LH AA RG +E+V+ L+
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
+N+ D G TPLH+AA G +VE L+
Sbjct: 73 VNARDIWGRTPLHLAATVGHLEIVEVLL 100
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA+ G+L+I++ LL++ DV RD G T LH AA G +E+V+ L+ +N+
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADV-NARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEAL 281
D G T I+ G + E L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 52/157 (33%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L A GQ + V+ L+A+ +N+ D G TPLH+AA RG +VE L
Sbjct: 15 GKKLLEATRA-GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVL------- 66
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
+K A +NA++ GRT L
Sbjct: 67 ---------------------------------LKHGAD---------VNARDIWGRTPL 84
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
H+A T HLE+V++L+ + +VN +D G T D+
Sbjct: 85 HLAATVG-HLEIVEVLLEYGA-DVNAQDKFGKTAFDI 119
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 207 NLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPL 266
++ ++K LL +D+ RD + + LH AA G V++ + L+A+ +++ + G++PL
Sbjct: 123 HVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL 181
Query: 267 HIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVK 320
HIAA + V L L+ S +++KN GET L A Q ++ ++ + ++
Sbjct: 182 HIAARENRYDCV-VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 92/181 (50%), Gaps = 21/181 (11%)
Query: 190 YKWEMMNR--AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKD 247
+K E N+ +HAAA G++ I L++ ++ T + Q + ++ AA +E VK
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENN-HLEAVKY 62
Query: 248 LIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGF 307
LI + +++ D +G+T LH+AA +G VV+ L+ ++ ++ G T + A
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE-- 120
Query: 308 QTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALH-MAITGNVHLELVQLLMS 366
++ +D VKL+ L+ G N+ D N+ LH A +G V ++ ++L++
Sbjct: 121 ----YKHVDL-VKLL--LSKGSDINIRD------NEENICLHWAAFSGCV--DIAEILLA 165
Query: 367 A 367
A
Sbjct: 166 A 166
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 28/152 (18%)
Query: 259 DHQGN-TPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDR 317
+HQ +PLH AA G + L+ A + I + T L A A + L +
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIK 65
Query: 318 QVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDN 377
L ++ K+ +G T LH+A H E+VQ L+S ++VN +D+
Sbjct: 66 AGAL---------------VDPKDAEGSTCLHLAAKKG-HYEVVQYLLSNGQMDVNCQDD 109
Query: 378 DGMTTL---------DLLKQRPQSASSDILIR 400
G T + DL+K S SDI IR
Sbjct: 110 GGWTPMIWATEYKHVDLVK-LLLSKGSDINIR 140
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H A+ G++ ++ LL+N +D +D G T LH A G ++VV+ L+ ++N+T
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72
Query: 259 DHQGNTPLHIAAYRGQPAVVEALI 282
+Q ++PLH AA G +V+ L+
Sbjct: 73 GYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 224 YRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL 283
+ + +G T+LH A+ +G + V+ L+ + N DH G TPLH A G VVE L+L
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE-LLL 63
Query: 284 ASPSMISVKNTSGETFLHSA 303
++++ ++ LH A
Sbjct: 64 QHKALVNTTGYQNDSPLHDA 83
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 206 GNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP 265
GN +I + LL + +D+ G ++H AA G ++ ++ L+ + +N D++GN P
Sbjct: 48 GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLP 106
Query: 266 LHIAAYRGQPAVVEALILASPSMISVKNTSGET 298
LH+AA G VVE L+ + S + +N G+T
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIA-SFDIINS 257
+H AAR G L L+ LLEN DV D +G+ LH AA G + VV+ L+ + +
Sbjct: 74 IHDAARAGFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 258 TDHQGNTPLHIAAYRGQPAVVEAL 281
+H+G+T +A G+ VV +
Sbjct: 133 RNHKGDTACDLARLYGRNEVVSLM 156
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 24/158 (15%)
Query: 233 LHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMIS 290
L +AA RG +E + L+ + +N+ + G T L + G P + L+L A+P +
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL-- 65
Query: 291 VKNTSGETFLHSAV-SGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALH 349
K+ +G +H A +GF LD L++ A +N ++N+G LH
Sbjct: 66 -KDRTGFAVIHDAARAGF-------LDTLQTLLENQAD---------VNIEDNEGNLPLH 108
Query: 350 MAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLK 387
+A HL +V+ L+ + NV R++ G T DL +
Sbjct: 109 LAAKEG-HLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 206 GNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP 265
GN +I + LL + +D+ G+ ++H AA G ++ ++ L+ +N D++GN P
Sbjct: 48 GNPEIARRLLLRGANP-DLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 266 LHIAAYRGQPAVVEALILASPSMISVKNTSGET 298
LH+AA G VVE L+ + S + +N G+T
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIA-SFDI 254
N +H AAR G L L+ LLE DV D +G+ LH AA G + VV+ L+ +
Sbjct: 71 NAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEAL 281
+ +H+G+T +A G+ VV +
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 24/158 (15%)
Query: 233 LHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMIS 290
L +AA RG +E + L+ + +N+ + G T L + G P + L+L A+P +
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL-- 65
Query: 291 VKNTSGETFLHSAV-SGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALH 349
K+ +G +H A +GF LD L++ A +N ++N+G LH
Sbjct: 66 -KDRTGNAVIHDAARAGF-------LDTLQTLLEFQAD---------VNIEDNEGNLPLH 108
Query: 350 MAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLK 387
+A HL +V+ L+ + NV R++ G T DL +
Sbjct: 109 LAAKEG-HLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV +D+ G T L+ A G +E+V+ L+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
+N+ D G TPLH+AA+ G + E L+
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLL 100
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
++ A G+L+I++ LL+N DV D G T LH AA G +E+ + L+ +N+
Sbjct: 51 LYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEAL 281
D G T I+ G + E L
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEIL 132
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV DK G T LH AA +E+V+ L+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
+N+ D G TPLH+ A G +VE L+
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVLL 100
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA +L+I++ LL+N DV D G T LH A G +E+V+ L+ +N+
Sbjct: 51 LHLAAMNDHLEIVEVLLKNGADVNAI-DAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQ 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEAL 281
D G T I+ G + E L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 206 GNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP 265
GN +I + LL + +D+ G ++H AA G ++ ++ L+ +N D++GN P
Sbjct: 48 GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 266 LHIAAYRGQPAVVEALILASPSMISVKNTSGET 298
LH+AA G VVE L+ + S + +N G+T
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIA-SFDIINS 257
+H AAR G L L+ LLE DV D +G+ LH AA G + VV+ L+ + +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 258 TDHQGNTPLHIAAYRGQPAVVEAL 281
+H+G+T +A G+ VV +
Sbjct: 133 RNHKGDTACDLARLYGRNEVVSLM 156
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 24/158 (15%)
Query: 233 LHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMIS 290
L +AA RG +E + L+ + +N+ + G T L + G P + L+L A+P +
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL-- 65
Query: 291 VKNTSGETFLHSAV-SGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALH 349
K+ +G +H A +GF LD L++ A +N ++N+G LH
Sbjct: 66 -KDRTGFAVIHDAARAGF-------LDTLQTLLEFQAD---------VNIEDNEGNLPLH 108
Query: 350 MAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLK 387
+A HL +V+ L+ + NV R++ G T DL +
Sbjct: 109 LAAKEG-HLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 206 GNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP 265
GN +I + LL + +D+ G ++H AA G ++ ++ L+ +N D++GN P
Sbjct: 48 GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 266 LHIAAYRGQPAVVEALILASPSMISVKNTSGET 298
LH+AA G VVE L+ + S + +N G+T
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIA-SFDIINS 257
+H AAR G L L+ LLE DV D +G+ LH AA G + VV+ L+ + +
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 258 TDHQGNTPLHIAAYRGQPAVVEAL 281
+H+G+T +A G+ VV +
Sbjct: 133 RNHKGDTACDLARLYGRNEVVSLM 156
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 24/158 (15%)
Query: 233 LHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMIS 290
L +AA RG +E + L+ + +N+ + G T L + G P + L+L A+P +
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL-- 65
Query: 291 VKNTSGETFLHSAV-SGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALH 349
K+ +G +H A +GF LD L++ A +N ++N+G LH
Sbjct: 66 -KDRTGFAVIHDAARAGF-------LDTLQTLLEFQAD---------VNIEDNEGNLPLH 108
Query: 350 MAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLK 387
+A HL +V+ L+ + NV R++ G T DL +
Sbjct: 109 LAAKEG-HLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L N DV D G T LH AA G +E+V+ L+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILTANGADV-NANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALI 282
+N+T + G TPLH+AA+ +VE L+
Sbjct: 73 VNATGNTGRTPLHLAAWADHLEIVEVLL 100
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L AA GQ + V+ L A+ +N+ D+ G+TPLH+AA G +VE L+ +
Sbjct: 15 GKKLLEAARA-GQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV 73
Query: 289 ISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
+ NT G T LH A L+ L+K A +NA++ G+TA
Sbjct: 74 NATGNT-GRTPLHLAAWA------DHLEIVEVLLKHGAD---------VNAQDKFGKTAF 117
Query: 349 HMAI-TGNVHL-ELVQLL 364
++I GN L E++Q L
Sbjct: 118 DISIDNGNEDLAEILQKL 135
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA G+L+I++ LL+N DV G T LH AA +E+V+ L+ +N+
Sbjct: 51 LHLAAMLGHLEIVEVLLKNGADV-NATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQ 109
Query: 259 DHQGNTPLHIAAYRGQPAVVEAL 281
D G T I+ G + E L
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 223 TYRDKQGSTILHAAAGRGQVEVVKDLIASF-------DIINSTDHQGNTPLHIAAYRGQP 275
T D+ G T LH A +G + V L+ F DI N+ TPLH+A P
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR---QTPLHLAVITTLP 59
Query: 276 AVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMED 335
+VV L+ A S +++ + G+T H A R L+ A G +
Sbjct: 60 SVVRLLVTAGASPMAL-DRHGQTAAHLACEHRSPTCLR------ALLDSAAPGTLD---- 108
Query: 336 IINAKNNDGRTALHMAITGNVHLELVQLLM 365
+ A+N DG TALH+A+ E VQLL+
Sbjct: 109 -LEARNYDGLTALHVAVNTECQ-ETVQLLL 136
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ 261
A +L +++ LL++ +V + GS+ LH+A+GRG + +V+ L+ S + +
Sbjct: 157 AVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCH 215
Query: 262 GNTPLHIAAYR 272
+TPL +A R
Sbjct: 216 NDTPLMVARSR 226
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 57/209 (27%), Positives = 104/209 (49%), Gaps = 21/209 (10%)
Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
A+ AA + K +KE+L++ T + D +G+T L+ A +E+ K LI IN
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 258 TDHQGNTPLHIAAYRGQPAVVEALIL-ASPSMISVKNTSGETFLHSAVSGFQTYAFRRLD 316
+ ++P A +G+ ++ ++ A+P + G + +A G +D
Sbjct: 68 QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG-------HID 120
Query: 317 RQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI---TGN-VHLELVQLLMSAPSINV 372
VKL+ L G+ ED I+ +N+ G TAL A+ GN ++ ++V+LLM + +
Sbjct: 121 -NVKLL--LEDGR----ED-IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA-DQ 171
Query: 373 NVRDNDGMTTLDLLKQRPQSASSDILIRH 401
+++DN G T +D Q+ + S IL ++
Sbjct: 172 SIKDNSGRTAMDYANQKGYTEISKILAQY 200
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 17/180 (9%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA G ++ LL++ + R+ + LH A +G +VVK L+ S N
Sbjct: 90 LHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK 148
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQ 318
D GNTPL A G +V AL+L + I+ N G T LH AV +
Sbjct: 149 DLSGNTPLIYACSGGHHELV-ALLLQHGASINASNNKGNTALHEAVIEKHVFVVEL---- 203
Query: 319 VKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDND 378
L+ AS Q+ N RTA+ A + +EL+Q++ S + +V + D
Sbjct: 204 --LLLHGASVQVLNKRQ---------RTAVDCAEQNSKIMELLQVVPSCVASLDDVAETD 252
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 22/130 (16%)
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS--GFQTYAF 312
+N T G++PLH+AA G+ ++ L+L + +N LH A FQ
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLI-PLLLKHGANAGARNADQAVPLHLACQQGHFQVVKC 137
Query: 313 RRLDRQVKLMKQLASGQ-----------------IFNMEDIINAKNNDGRTALHMAITGN 355
LD K K+ SG + INA NN G TALH A+
Sbjct: 138 -LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEK 196
Query: 356 VHLELVQLLM 365
H+ +V+LL+
Sbjct: 197 -HVFVVELLL 205
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 127/321 (39%), Gaps = 51/321 (15%)
Query: 111 LLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPR 170
LL A D+ V+QLL+ + F E E G T + A S+ D+ L+ P
Sbjct: 28 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE-DIVELLLRHGADPV 86
Query: 171 FLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGS 230
G P + AA G++K+LK L DV D G
Sbjct: 87 LRKKNGA--------TPFIL-----------AAIAGSVKLLKLFLSKGADV-NECDFYGF 126
Query: 231 TILHAAAGRGQVEVVKDLI---ASFDIINSTDHQ-------GNTPLHIAAYRGQPAVVEA 280
T AA G+V+ +K L A+ ++ T G T L AA +G V++
Sbjct: 127 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 186
Query: 281 LILASPSMISVKNTSGE-TFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINA 339
L+ + ++ + G +H+ +S D V+ + L + + +N
Sbjct: 187 LLDEMGADVNACDNMGRNALIHALLSSD--------DSDVEAITHL----LLDHGADVNV 234
Query: 340 KNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILI 399
+ G+T L +A+ HL LVQ L+ I +N D+DG T L L + +++L
Sbjct: 235 RGERGKTPLILAVEKK-HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 293
Query: 400 RHLISAGGIFGCQDY--SARR 418
+ G C D +ARR
Sbjct: 294 KR----GASTDCGDLVMTARR 310
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV +DK GST LH AA G +EVVK L+ +
Sbjct: 6 LGKKLLEAARAGQDDEVRILMANGADVAA-KDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEAL 281
+N+ D G T I+ G + E L
Sbjct: 65 VNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 35.8 bits (81), Expect = 0.080, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L AA GQ + V+ L+A+ + + D G+TPLH+AA G VV+ L+L + +
Sbjct: 7 GKKLLEAARA-GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVK-LLLEAGAD 64
Query: 289 ISVKNTSGET 298
++ ++ G+T
Sbjct: 65 VNAQDKFGKT 74
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 26/197 (13%)
Query: 194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFD 253
M N +H A ++ELL + +L +D+ G LH + E+ L++ +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 254 IINSTDH---QGNTPLHIAAYRGQPAVVEALI--LASPSMISVKNTSGETFLHSAVSG-- 306
+N D+ G TP HIA G VV++L P + + N G T LH AV
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKW 119
Query: 307 FQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMS 366
F+ F L++ AS +I K+ + LH A + L+L++LL
Sbjct: 120 FEVSQF--------LIENGASVRI---------KDKFNQIPLHRAASVG-SLKLIELLCG 161
Query: 367 APSINVNVRDNDGMTTL 383
VN +D G T L
Sbjct: 162 LGKSAVNWQDKQGWTPL 178
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 200 HAAARGGNLKILKELLEN-CTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
H A GNL+++K L + L QG T LH A G+ EV + LI + +
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305
D PLH AA G ++E L S ++ ++ G T L A++
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 32/158 (20%)
Query: 109 GWL-LYTAASAGDLGFVKQLLDKNPLL--VFGEGEYGVTDIFYAAARSKNCDVFRLIYDF 165
GW + A S G+L VK L D+ PL + GVT + A + F
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKW----------F 120
Query: 166 AVSPRFLTAKGG--ELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLT 223
VS +FL G +++ +IP +H AA G+LK+++ L +
Sbjct: 121 EVS-QFLIENGASVRIKDKFNQIP-----------LHRAASVGSLKLIELLCGLGKSAVN 168
Query: 224 YRDKQGST-ILHAAA---GRGQVEVVKDLIASFDIINS 257
++DKQG T + HA A G V +V+ A +D++++
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 23/177 (12%)
Query: 222 LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEAL 281
L +++ T LH A Q E+ + L+ + D +GNTPLH+A +G A V L
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 94
Query: 282 ILA--SP---SMISVKNTSGETFLH-SAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMED 335
+ +P S++ N +G T LH +++ G+ V+L+ L + D
Sbjct: 95 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI--------VELLVSLGA-------D 139
Query: 336 IINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQS 392
+ + +GRTALH+A+ + +LV LL+ + +VN G + L RP +
Sbjct: 140 VNAQEPCNGRTALHLAVDLQ-NPDLVSLLLKCGA-DVNRVTYQGYSPYQLTWGRPST 194
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 23/167 (13%)
Query: 227 KQGSTILHAAAGRGQ----VEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALI 282
+ G + LH A + +EV++ + +N ++ TPLH+A QP + EAL+
Sbjct: 3 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 62
Query: 283 LA--SPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAK 340
A P + ++ G T LH A + V ++ Q S ++ I+ A
Sbjct: 63 GAGCDPEL---RDFRGNTPLHLACE-------QGCLASVGVLTQ--SCTTPHLHSILKAT 110
Query: 341 NNDGRTALHMA-ITGNVHLELVQLLMSAPSINVNVRDN-DGMTTLDL 385
N +G T LH+A I G +L +V+LL+S + +VN ++ +G T L L
Sbjct: 111 NYNGHTCLHLASIHG--YLGIVELLVSLGA-DVNAQEPCNGRTALHL 154
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 26/197 (13%)
Query: 194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFD 253
M N +H A ++ELL + +L +D+ G LH + E+ L++ +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 254 IINSTDH---QGNTPLHIAAYRGQPAVVEALI--LASPSMISVKNTSGETFLHSAVSG-- 306
+N D+ G TP HIA G VV++L P + + N G T LH AV
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKW 119
Query: 307 FQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMS 366
F+ F L++ AS +I K+ + LH A + L+L++LL
Sbjct: 120 FEVSQF--------LIENGASVRI---------KDKFNQIPLHRAASVG-SLKLIELLCG 161
Query: 367 APSINVNVRDNDGMTTL 383
VN +D G T L
Sbjct: 162 LGKSAVNWQDKQGWTPL 178
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 200 HAAARGGNLKILKELLEN-CTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
H A GNL+++K L + L QG T LH A G+ EV + LI + +
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305
D PLH AA G ++E L S ++ ++ G T L A++
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 32/158 (20%)
Query: 109 GWL-LYTAASAGDLGFVKQLLDKNPLL--VFGEGEYGVTDIFYAAARSKNCDVFRLIYDF 165
GW + A S G+L VK L D+ PL + GVT + A + F
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKW----------F 120
Query: 166 AVSPRFLTAKGG--ELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLT 223
VS +FL G +++ +IP +H AA G+LK+++ L +
Sbjct: 121 EVS-QFLIENGASVRIKDKFNQIP-----------LHRAASVGSLKLIELLCGLGKSAVN 168
Query: 224 YRDKQGST-ILHAAA---GRGQVEVVKDLIASFDIINS 257
++DKQG T + HA A G V +V+ A +D++++
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 26/197 (13%)
Query: 194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFD 253
M N +H A ++ELL + +L +D+ G LH + E+ L++ +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 254 IINSTDH---QGNTPLHIAAYRGQPAVVEALI--LASPSMISVKNTSGETFLHSAVSG-- 306
+N D+ G TP HIA G VV++L P + + N G T LH AV
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKW 119
Query: 307 FQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMS 366
F+ F L++ AS +I K+ + LH A + L+L++LL
Sbjct: 120 FEVSQF--------LIENGASVRI---------KDKFNQIPLHRAASVG-SLKLIELLCG 161
Query: 367 APSINVNVRDNDGMTTL 383
VN +D G T L
Sbjct: 162 LGKSAVNWQDKQGWTPL 178
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 200 HAAARGGNLKILKELLEN-CTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
H A GNL+++K L + L QG T LH A G+ EV + LI + +
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305
D PLH AA G ++E L S ++ ++ G T L A++
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 32/158 (20%)
Query: 109 GWL-LYTAASAGDLGFVKQLLDKNPLL--VFGEGEYGVTDIFYAAARSKNCDVFRLIYDF 165
GW + A S G+L VK L D+ PL + GVT + A + F
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKW----------F 120
Query: 166 AVSPRFLTAKGG--ELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLT 223
VS +FL G +++ +IP +H AA G+LK+++ L +
Sbjct: 121 EVS-QFLIENGASVRIKDKFNQIP-----------LHRAASVGSLKLIELLCGLGKSAVN 168
Query: 224 YRDKQGST-ILHAAA---GRGQVEVVKDLIASFDIINS 257
++DKQG T + HA A G V +V+ A +D++++
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
VH AAR G L LK L+E+ DV D G+ +H A G VV L A D ++
Sbjct: 78 VHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAESD-LHRR 135
Query: 259 DHQGNTPLHIAAYRGQPAVVEAL 281
D +G TPL +A RG +V+ L
Sbjct: 136 DARGLTPLELALQRGAQDLVDIL 158
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 29/177 (16%)
Query: 233 LHAAAGRGQVEVVKDLIASFDII--NSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSM 288
L AA RG V+ V+ L+ +++ ++ + G T L + + G A+ L+ ASP+
Sbjct: 12 LSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN- 68
Query: 289 ISVKNTSGETFLHSAV-SGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTA 347
V++TSG + +H A +GF LD L++ A +N + G
Sbjct: 69 --VQDTSGTSPVHDAARTGF-------LDTLKVLVEHGAD---------VNVPDGTGALP 110
Query: 348 LHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLIS 404
+H+A+ H +V L A +++ RD G+T L+L QR DIL H+++
Sbjct: 111 IHLAVQEG-HTAVVSFL--AAESDLHRRDARGLTPLELALQRGAQDLVDILQGHMVA 164
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 225 RDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILA 284
+D G++ +H AA G ++ +K L+ +N D G P+H+A G AVV LA
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS--FLA 127
Query: 285 SPSMISVKNTSGETFLHSAV 304
+ S + ++ G T L A+
Sbjct: 128 AESDLHRRDARGLTPLELAL 147
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 102/241 (42%), Gaps = 54/241 (22%)
Query: 182 HIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQ 241
H+ I W+++ A + G + +EL+E DV DK+ T+LH AA +
Sbjct: 1 HMTHIDDYSTWDIVK-----ATQYGIYERCRELVEAGYDVRQ-PDKENVTLLHWAAINNR 54
Query: 242 VEVVKDLIASFDIINSTDHQGN-TPLHIAAYRGQPAVVEALIL--ASPSMISVKNTSGET 298
+++VK I+ I++ N TPLH A +G ++V L+ A PS+I + G +
Sbjct: 55 IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCS 111
Query: 299 FLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMED----------------------- 335
+H A T L +A GQ +M D
Sbjct: 112 CIHLAAQFGHTSIVAYL---------IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL 162
Query: 336 -IINAKNNDG-----RTALHMAI-TGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQ 388
N N G TALH A+ GN ++ LL+ A + NV+ ++ G + LDL KQ
Sbjct: 163 LTFNVSVNLGDKYHKNTALHWAVLAGNT--TVISLLLEAGA-NVDAQNIKGESALDLAKQ 219
Query: 389 R 389
R
Sbjct: 220 R 220
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 20/153 (13%)
Query: 96 KNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKN 155
K G + + G G ++ AA G V L+ K + + + G+T + +AA R+ +
Sbjct: 97 KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD-QNGMTPLMWAAYRTHS 155
Query: 156 CDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELL 215
D RL+ F VS G + + N A+H A GN ++ LL
Sbjct: 156 VDPTRLLLTFNVSVNL----GDKYHK--------------NTALHWAVLAGNTTVISLLL 197
Query: 216 ENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDL 248
E +V ++ +G + L A R V ++ L
Sbjct: 198 EAGANV-DAQNIKGESALDLAKQRKNVWMINHL 229
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 224 YRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL 283
Y S +H A +G++ + I ++IN TD +G TPL AA GQ AVVE L+
Sbjct: 14 YFQGANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ 73
Query: 284 --ASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKN 341
A P ++ S + + G+ LD V +N +
Sbjct: 74 NGADPQLLGKGRESALSL--ACSKGYTDIVKMLLDCGVD----------------VNEYD 115
Query: 342 NDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401
+G T L A+ GN H++ V++L+ + + + + + G ++DL + ++ H
Sbjct: 116 WNGGTPLLYAVHGN-HVKCVKMLLESGA-DPTIETDSGYNSMDLAVALGYRSVQQVIESH 173
Query: 402 LI 403
L+
Sbjct: 174 LL 175
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 196 NRAVHAAARGGNLKILKELLE----NCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIAS 251
+R + AA+ G+++ +K+L NC D+ + + ST LH AAG +V VV+ L+
Sbjct: 13 DRQLLEAAKAGDVETVKKLCTVQSVNCRDI----EGRQSTPLHFAAGYNRVSVVEYLLQH 68
Query: 252 FDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305
+++ D G PLH A G V E L++ ++++V + T LH A +
Sbjct: 69 GADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLHEAAA 121
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA + +++ LL++ DV +DK G LH A G EV + L+ ++N
Sbjct: 50 LHFAAGYNRVSVVEYLLQHGADVHA-KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 108
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFL 300
D TPLH AA +G+ + + L+L + + KN G T L
Sbjct: 109 DLWKFTPLHEAAAKGKYEICK-LLLQHGADPTKKNRDGNTPL 149
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 196 NRAVHAAARGGNLKILKELLE----NCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIAS 251
+R + AA+ G+++ +K+L NC D+ + + ST LH AAG +V VV+ L+
Sbjct: 11 DRQLLEAAKAGDVETVKKLCTVQSVNCRDI----EGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 252 FDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305
+++ D G PLH A G V E L++ ++++V + T LH A +
Sbjct: 67 GADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLHEAAA 119
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA + +++ LL++ DV +DK G LH A G EV + L+ ++N
Sbjct: 48 LHFAAGYNRVSVVEYLLQHGADVHA-KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 106
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFL 300
D TPLH AA +G+ + + L+L + + KN G T L
Sbjct: 107 DLWKFTPLHEAAAKGKYEICK-LLLQHGADPTKKNRDGNTPL 147
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 196 NRAVHAAARGGNLKILKELLE----NCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIAS 251
+R + AA+ G+++ +K+L NC D+ + + ST LH AAG +V VV+ L+
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDI----EGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 252 FDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305
+++ D G PLH A G V E L++ ++++V + T LH A +
Sbjct: 65 GADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLHEAAA 117
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA + +++ LL++ DV +DK G LH A G EV + L+ ++N
Sbjct: 46 LHFAAGYNRVSVVEYLLQHGADVHA-KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 104
Query: 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFL 300
D TPLH AA +G+ + + L+L + + KN G T L
Sbjct: 105 DLWKFTPLHEAAAKGKYEICK-LLLQHGADPTKKNRDGNTPL 145
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
VH AAR G L LK L+E+ DV D G+ +H A G VV L A D ++
Sbjct: 72 VHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAESD-LHRR 129
Query: 259 DHQGNTPLHIAAYRGQPAVVEAL 281
D +G TPL +A RG +V+ L
Sbjct: 130 DARGLTPLELALQRGAQDLVDIL 152
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 225 RDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILA 284
+D G++ +H AA G ++ +K L+ +N D G P+H+A G AVV LA
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS--FLA 121
Query: 285 SPSMISVKNTSGETFLHSAV 304
+ S + ++ G T L A+
Sbjct: 122 AESDLHRRDARGLTPLELAL 141
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 27/174 (15%)
Query: 233 LHAAAGRGQVEVVKDLIASFDII--NSTDHQGNTPLHIAAYRGQPAVVEALIL-ASPSMI 289
L AA RG V+ V+ L+ +++ ++ + G T L + + +E L ASP+
Sbjct: 6 LSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPN-- 62
Query: 290 SVKNTSGETFLHSAV-SGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348
V++TSG + +H A +GF LD L++ A +N + G +
Sbjct: 63 -VQDTSGTSPVHDAARTGF-------LDTLKVLVEHGAD---------VNVPDGTGALPI 105
Query: 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHL 402
H+A+ H +V L A +++ RD G+T L+L QR DIL H+
Sbjct: 106 HLAVQEG-HTAVVSFL--AAESDLHRRDARGLTPLELALQRGAQDLVDILQGHM 156
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 221 VLTYRDKQGSTILHAAAGRGQVEVVKDLIAS-FDIINSTDHQGNTPLH---IAAYRGQPA 276
V+ D G+T LH + VV+ L+ S ++ + G +P+ +A + Q
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDD 162
Query: 277 VVEALILASPSMISVKNT-SGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMED 335
+ L L I+ K + +G+T L AVS +V ++K L E
Sbjct: 163 IETVLQLFRLGNINAKASQAGQTALMLAVS----------HGRVDVVKAL-----LACEA 207
Query: 336 IINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASS 395
+N +++DG TAL M + H E+ LL++ PS ++++ D DG T L + QS +
Sbjct: 208 DVNVQDDDGSTAL-MCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIA 266
Query: 396 DIL 398
+L
Sbjct: 267 SML 269
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 22/173 (12%)
Query: 233 LHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMIS 290
+H A +G++ + I ++IN TD +G TPL AA GQ AVVE L+ A P ++
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 291 VKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM 350
S + + G+ LD V +N + +G T L
Sbjct: 67 KGRESALSL--ACSKGYTDIVKMLLDCGVD----------------VNEYDWNGGTPLLY 108
Query: 351 AITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLI 403
A+ GN H++ V++L+ + + + + + G ++DL + ++ HL+
Sbjct: 109 AVHGN-HVKCVKMLLESGA-DPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ 261
AA G + +++ LL+N D K + L A +G ++VK L+ +N D
Sbjct: 43 AAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN 101
Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305
G TPL A + V+ ++L S + +++ SG + AV+
Sbjct: 102 GGTPLLYAVHGNHVKCVK-MLLESGADPTIETDSGYNSMDLAVA 144
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 22/173 (12%)
Query: 233 LHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSMIS 290
+H A +G++ + I ++IN TD +G TPL AA GQ AVVE L+ A P ++
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 291 VKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM 350
S + + G+ LD V +N + +G T L
Sbjct: 65 KGRESALSL--ACSKGYTDIVKMLLDCGVD----------------VNEYDWNGGTPLLY 106
Query: 351 AITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLI 403
A+ GN H++ V++L+ + + + + + G ++DL + ++ HL+
Sbjct: 107 AVHGN-HVKCVKMLLESGA-DPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 157
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ 261
AA G + +++ LL+N D K + L A +G ++VK L+ +N D
Sbjct: 41 AAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN 99
Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305
G TPL A + V+ ++L S + +++ SG + AV+
Sbjct: 100 GGTPLLYAVHGNHVKCVK-MLLESGADPTIETDSGYNSMDLAVA 142
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 23/177 (12%)
Query: 222 LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEAL 281
L +++ T LH A Q E+ + L+ + D +GNTPLH+A +G A V L
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 282 I--LASP---SMISVKNTSGETFLH-SAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMED 335
+P S++ N +G T LH +++ G+ V+L+ L + D
Sbjct: 98 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI--------VELLVSLGA-------D 142
Query: 336 IINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQS 392
+ + +GRTALH+A+ + +LV LL+ + +VN G + L RP +
Sbjct: 143 VNAQEPCNGRTALHLAVDLQ-NPDLVSLLLKCGA-DVNRVTYQGYSPYQLTWGRPST 197
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 19/165 (11%)
Query: 227 KQGSTILHAAAGRGQ----VEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALI 282
+ G + LH A + +EV++ + +N ++ TPLH+A QP + EAL
Sbjct: 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL- 64
Query: 283 LASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNN 342
L + +++ G T LH A + V ++ Q S ++ I+ A N
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACE-------QGCLASVGVLTQ--SCTTPHLHSILKATNY 115
Query: 343 DGRTALHMA-ITGNVHLELVQLLMSAPSINVNVRD-NDGMTTLDL 385
+G T LH+A I G +L +V+LL+S + +VN ++ +G T L L
Sbjct: 116 NGHTCLHLASIHG--YLGIVELLVSLGA-DVNAQEPCNGRTALHL 157
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 29/176 (16%)
Query: 233 LHAAAGRGQVEVVKDLIASFDII--NSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSM 288
L AA RG V+ V+ L+ +++ ++ + G T L + + G PAV L+ ASP+
Sbjct: 14 LSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQVMMF-GSPAVALELLKQGASPN- 70
Query: 289 ISVKNTSGETFLHSAV-SGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTA 347
V++ SG + +H A +GF LD L++ A +NA ++ G
Sbjct: 71 --VQDASGTSPVHDAARTGF-------LDTLKVLVEHGAD---------VNALDSTGSLP 112
Query: 348 LHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLI 403
+H+AI H +V L AP +++ RD G+T L+L +QR DIL H++
Sbjct: 113 IHLAIREG-HSSVVSFL--APESDLHHRDASGLTPLELARQRGAQNLMDILQGHMM 165
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 65/147 (44%), Gaps = 17/147 (11%)
Query: 149 AAARSKNCDVFRLIYDFAVSPRFLTAKG-GELEEHIEEIPSVYKWEMMNRA--------- 198
AAAR +V RL++ V P L G L+ + P+V E++ +
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAV-ALELLKQGASPNVQDAS 75
Query: 199 ----VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
VH AAR G L LK L+E+ DV D GS +H A G VV L D
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVVSFLAPESD- 133
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEAL 281
++ D G TPL +A RG +++ L
Sbjct: 134 LHHRDASGLTPLELARQRGAQNLMDIL 160
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 29/176 (16%)
Query: 233 LHAAAGRGQVEVVKDLIASFDII--NSTDHQGNTPLHIAAYRGQPAVVEALIL--ASPSM 288
L AA RG V+ V+ L+ +++ ++ + G T L + + G PAV L+ ASP+
Sbjct: 12 LSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQVMMF-GSPAVALELLKQGASPN- 68
Query: 289 ISVKNTSGETFLHSAV-SGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTA 347
V++ SG + +H A +GF LD L++ A +NA ++ G
Sbjct: 69 --VQDASGTSPVHDAARTGF-------LDTLKVLVEHGAD---------VNALDSTGSLP 110
Query: 348 LHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLI 403
+H+AI H +V L AP +++ RD G+T L+L +QR DIL H++
Sbjct: 111 IHLAIREG-HSSVVSFL--APESDLHHRDASGLTPLELARQRGAQNLMDILQGHMM 163
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 65/147 (44%), Gaps = 17/147 (11%)
Query: 149 AAARSKNCDVFRLIYDFAVSPRFLTAKG-GELEEHIEEIPSVYKWEMMNRA--------- 198
AAAR +V RL++ V P L G L+ + P+V E++ +
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAV-ALELLKQGASPNVQDAS 73
Query: 199 ----VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
VH AAR G L LK L+E+ DV D GS +H A G VV L D
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVVSFLAPESD- 131
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEAL 281
++ D G TPL +A RG +++ L
Sbjct: 132 LHHRDASGLTPLELARQRGAQNLMDIL 158
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV +DK GST LH AA G +EVVK L+ +
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADVAA-KDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEAL 281
+ + D G T I+ G + E L
Sbjct: 83 VXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L AA GQ + V+ L+A+ + + D G+TPLH+AA G VV+ L+L + +
Sbjct: 25 GKKLLEAARA-GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVK-LLLEAGAD 82
Query: 289 ISVKNTSGET 298
+ ++ G+T
Sbjct: 83 VXAQDKFGKT 92
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 120/301 (39%), Gaps = 45/301 (14%)
Query: 111 LLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPR 170
LL A D+ V+QLL+ + F E E G T + A S+ D+ L+ P
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE-DIVELLLRHGADPV 66
Query: 171 FLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGS 230
G P + AA G++K+LK L DV D G
Sbjct: 67 LRKKNGA--------TPFLL-----------AAIAGSVKLLKLFLSKGADV-NECDFYGF 106
Query: 231 TILHAAAGRGQVEVVKDLI---ASFDIINSTDHQ-------GNTPLHIAAYRGQPAVVEA 280
T AA G+V+ +K L A+ ++ T G T L AA +G V++
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166
Query: 281 LILASPSMISVKNTSGE-TFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINA 339
L+ + ++ + G +H+ +S D V+ + L + + +N
Sbjct: 167 LLDEMGADVNACDNMGRNALIHALLSSD--------DSDVEAITHL----LLDHGADVNV 214
Query: 340 KNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILI 399
+ G+T L +A+ HL LVQ L+ I +N D+DG T L L + +++L
Sbjct: 215 RGERGKTPLILAVEKK-HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273
Query: 400 R 400
+
Sbjct: 274 K 274
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254
+ + + AAR G ++ L+ N DV +DK G T LH AA G +E+V+ L+ +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEAL 281
+N+ D G T I+ G + E L
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 229 GSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
G +L AA GQ + V+ L+A+ +N+ D G TPLH+AA G +VE L+ A
Sbjct: 3 GKKLLEAARA-GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD- 60
Query: 289 ISVKNTSGET 298
++ ++ G+T
Sbjct: 61 VNAQDKFGKT 70
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
+NAK+ DG T LH+A HLE+V++L+ A + +VN +D G T D+
Sbjct: 28 VNAKDKDGYTPLHLAAREG-HLEIVEVLLKAGA-DVNAQDKFGKTAFDI 74
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 8/163 (4%)
Query: 275 PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNME 334
P + + L +++ T E H F A LD ++ L I+ ++
Sbjct: 3 PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLALL-LDSSLEGEFDLVQRIIYEVD 61
Query: 335 DIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSAS 394
D + N++G TALH A+ H E+V+ L+ +NVN D+DG T L S +
Sbjct: 62 DP-SLPNDEGITALHNAVCAG-HTEIVKFLVQF-GVNVNAADSDGWTPLHCAA----SCN 114
Query: 395 SDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSF 437
+ + + L+ +G YS + A + + G + + F
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 226 DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285
+ +G T LH A G E+VK L+ +N+ D G TPLH AA V + L+ +
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 286 PSMISVKNTSGET 298
++ ++ + +T
Sbjct: 127 AAVFAMTYSDMQT 139
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 24/175 (13%)
Query: 112 LYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRF 171
++ A+ G+L +K+ L K LV E G T + +A+A + + R + ++ P
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGE-IETVRFLLEWGADPHI 64
Query: 172 LTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGST 231
L + A+ A+ GG I+ LLE D+ Y G+
Sbjct: 65 LAKE-------------------RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTP 105
Query: 232 ILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIA---AYRGQPAVVEALIL 283
+L+A G V+ V+ L+A + + G TP+ +A YR V+E IL
Sbjct: 106 LLYAVRGN-HVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257
++H A G L LKE L +++ D++G T L A+ G++E V+ L+ +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 258 TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSG 306
+ + L +A+ G +V L+L I++ + +G T L AV G
Sbjct: 65 LAKERESALSLASTGGYTDIV-GLLLERDVDINIYDWNGGTPLLYAVRG 112
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 24/175 (13%)
Query: 112 LYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRF 171
++ A+ G+L +K+ L K LV E G T + +A+A + + R + ++ P
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGE-IETVRFLLEWGADPHI 64
Query: 172 LTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGST 231
L + A+ A+ GG I+ LLE D+ Y G+
Sbjct: 65 LAKE-------------------RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTP 105
Query: 232 ILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIA---AYRGQPAVVEALIL 283
+L+A G V+ V+ L+A + + G TP+ +A YR V+E IL
Sbjct: 106 LLYAVHGN-HVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 34/141 (24%)
Query: 198 AVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLI-------- 249
++H A G L LKE L +++ D++G T L A+ G++E V+ L+
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 250 ---------------ASFDI----------INSTDHQGNTPLHIAAYRGQPAVVEALILA 284
DI IN D G TPL A + VEAL LA
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEAL-LA 123
Query: 285 SPSMISVKNTSGETFLHSAVS 305
+ ++ + SG T + AV+
Sbjct: 124 RGADLTTEADSGYTPMDLAVA 144
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ 261
AA G L+++++ ++ D + +++G T LH A +V LI + +NS D
Sbjct: 28 AALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSH 86
Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYA-----FRRLD 316
G TPLH AA + AL+ ++ + + G T + YA ++
Sbjct: 87 GWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE 146
Query: 317 RQVKLMKQLASGQIFNMED 335
+ + LM SG ++ + D
Sbjct: 147 QSMGLMN---SGAVYALWD 162
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 231 TILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMIS 290
+L AA G++EVV+ + + + + +G T LH A ++V+ LI A + ++
Sbjct: 23 VLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-VN 81
Query: 291 VKNTSGETFLHSAVS 305
++ G T LH A S
Sbjct: 82 SPDSHGWTPLHCAAS 96
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 29/137 (21%)
Query: 262 GNTPLHIAAYRG-------------QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQ 308
G TPL IA+ G PAV+ I S+ + + +GET LH A
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR--- 66
Query: 309 TYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAP 368
+ R D +L++ A I ++N GRT LH A++ + + Q+L+
Sbjct: 67 ---YSRSDAAKRLLEASADANI---------QDNMGRTPLHAAVSADAQ-GVFQILIRNR 113
Query: 369 SINVNVRDNDGMTTLDL 385
+ +++ R +DG T L L
Sbjct: 114 ATDLDARMHDGTTPLIL 130
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 15/124 (12%)
Query: 226 DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285
D+ G T LH AA + + K L+ + N D+ G TPLH A V + LI
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 286 PSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGR 345
+ + + G T L A +L + + N +NA ++ G+
Sbjct: 114 ATDLDARMHDGTTPLILA---------------ARLAVEGMLEDLINSHADVNAVDDLGK 158
Query: 346 TALH 349
+ALH
Sbjct: 159 SALH 162
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 29/137 (21%)
Query: 262 GNTPLHIAAYRG-------------QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQ 308
G TPL IA+ G PAV+ I S+ + + +GET LH A
Sbjct: 11 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR--- 67
Query: 309 TYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAP 368
+ R D +L++ A I ++N GRT LH A++ + + Q+L+
Sbjct: 68 ---YSRSDAAKRLLEASADANI---------QDNMGRTPLHAAVSADAQ-GVFQILIRNR 114
Query: 369 SINVNVRDNDGMTTLDL 385
+ +++ R +DG T L L
Sbjct: 115 ATDLDARMHDGTTPLIL 131
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 15/124 (12%)
Query: 226 DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285
D+ G T LH AA + + K L+ + N D+ G TPLH A V + LI
Sbjct: 55 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 114
Query: 286 PSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGR 345
+ + + G T L A +L + + N +NA ++ G+
Sbjct: 115 ATDLDARMHDGTTPLILA---------------ARLAVEGMLEDLINSHADVNAVDDLGK 159
Query: 346 TALH 349
+ALH
Sbjct: 160 SALH 163
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 29/137 (21%)
Query: 262 GNTPLHIAAYRG-------------QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQ 308
G TPL IA+ G PAV+ I S+ + + +G T LH A
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAA---- 65
Query: 309 TYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAP 368
A+ R D +L++ A I ++N GRT LH A++ + + Q+L+
Sbjct: 66 --AYSRSDAAKRLLEASADANI---------QDNMGRTPLHAAVSADAQ-GVFQILIRNR 113
Query: 369 SINVNVRDNDGMTTLDL 385
+ +++ R +DG T L L
Sbjct: 114 ATDLDARMHDGTTPLIL 130
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 15/124 (12%)
Query: 226 DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285
D+ G+T LH AA + + K L+ + N D+ G TPLH A V + LI
Sbjct: 54 DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 286 PSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGR 345
+ + + G T L A +L + + N +NA ++ G+
Sbjct: 114 ATDLDARMHDGTTPLILA---------------ARLAVEGMLEDLINSHADVNAVDDLGK 158
Query: 346 TALH 349
+ALH
Sbjct: 159 SALH 162
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 8/164 (4%)
Query: 275 PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRL-DRQVKLMKQLASGQIFNM 333
P + + L +++ T E H F L D ++ L I+ +
Sbjct: 1 PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEV 60
Query: 334 EDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSA 393
+D + N++G TALH A+ H E+V+ L+ +NVN D+DG T L S
Sbjct: 61 DDP-SLPNDEGITALHNAVCAG-HTEIVKFLVQF-GVNVNAADSDGWTPLHCAA----SC 113
Query: 394 SSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSF 437
++ + + L+ +G YS + A + + G + + F
Sbjct: 114 NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 226 DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285
+ +G T LH A G E+VK L+ +N+ D G TPLH AA V + L+ +
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 286 PSMISVKNTSGET 298
++ ++ + +T
Sbjct: 127 AAVFAMTYSDMQT 139
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 11/157 (7%)
Query: 202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ 261
AAR + + L +LLE+ DV D+ G T L AG G + V+ L + ++ D +
Sbjct: 52 AARKADEQALSQLLED-RDVDAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 109
Query: 262 GN-TPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAF---RRLDR 317
G T LH+AA +P VVEAL+ I V++ G T L A +T + R
Sbjct: 110 GGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKTTPKGNPMQFGR 168
Query: 318 QVKLMK--QLASGQIFNMEDI--INAKNNDGRTALHM 350
++ L K + GQ+F ++ I K G+ ++
Sbjct: 169 RIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYL 205
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFD 253
M ++ A + G+L +K+ + DV + G LH AA GQ+E+++ L+
Sbjct: 1 MCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGA 59
Query: 254 IINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHS 302
IN+ D TPL A Y G + V+ L+L+ + +VK G T L +
Sbjct: 60 DINAPDKHHITPLLSAVYEGHVSCVK-LLLSKGADKTVKGPDGLTALEA 107
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 20/171 (11%)
Query: 212 KELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAY 271
K + +N + YRD T L A G + L+ +FD + D +G+T L A
Sbjct: 18 KSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVK 77
Query: 272 RGQPAVVEALILASPSMISVKNTSGET-FLHSAVSGFQTYAFRRLDRQVKLMKQLASGQI 330
+ + E L L+ S ++ K+ SG+T + S + G+ ++ L+
Sbjct: 78 NNRLGIAEKL-LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN---------- 126
Query: 331 FNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMT 381
+N +N +G T L +A + E+V+ L+ + +++ RD G+T
Sbjct: 127 ------VNDRNLEGETPLIVA-SKYGRSEIVKKLLELGA-DISARDLTGLT 169
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 275 PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNME 334
PAV+ I S+ + + +GET LH A + R D +L++ A I
Sbjct: 4 PAVISDFIYQGASLHNQTDRTGETALHLAAR------YSRSDAAKRLLEASADANI---- 53
Query: 335 DIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385
++N GRT LH A++ + + Q+L+ + +++ R +DG T L L
Sbjct: 54 -----QDNMGRTPLHAAVSADAQ-GVFQILIRNRATDLDARMHDGTTPLIL 98
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%)
Query: 226 DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285
D+ G T LH AA + + K L+ + N D+ G TPLH A V + LI
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 286 PSMISVKNTSGETFL 300
+ + + G T L
Sbjct: 82 ATDLDARMHDGTTPL 96
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFD 253
M ++ A + G+L +K+ + DV + G LH AA GQ+E+++ L+
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64
Query: 254 IINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGET 298
IN+ D TPL A Y G + V+ L+L+ + +VK G T
Sbjct: 65 DINAPDKHHITPLLSAVYEGHVSCVK-LLLSKGADKTVKGPDGLT 108
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 30/179 (16%)
Query: 201 AAARGGNL--------------KILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVK 246
AA RGG L +++ +LL ++ DK G T LH AA + + K
Sbjct: 9 AAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAK 68
Query: 247 DLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSG 306
L+ + NS D+ G TPLH A V + L+ + ++ + G T L A
Sbjct: 69 RLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILA--- 125
Query: 307 FQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLM 365
+L + + + INA +N G+TALH A N + E V +L+
Sbjct: 126 ------------ARLAIEGMVEDLITADADINAADNSGKTALHWAAAVN-NTEAVNILL 171
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+HAA + + + LL N L R G+T L AA +V+DLI + IN+
Sbjct: 88 LHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA 147
Query: 259 DHQGNTPLHIAAYRGQPAVVEALIL 283
D+ G T LH AA V L++
Sbjct: 148 DNSGKTALHWAAAVNNTEAVNILLM 172
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 9/136 (6%)
Query: 202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ 261
AAR + + L +LLE+ DV D+ G T L AG G + V+ L + ++ D +
Sbjct: 51 AARKADEQALSQLLED-RDVDAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 108
Query: 262 GN-TPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAF---RRLDR 317
G T LH+AA +P VVEAL+ I V++ G T L A +T + R
Sbjct: 109 GGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKTTPKGNPMQFGR 167
Query: 318 QVKLMK--QLASGQIF 331
++ L K + GQ+F
Sbjct: 168 RIGLEKVINVLEGQVF 183
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 164 DFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLT 223
D S + L KG +++ K++ A+H AA+ N I+K L+
Sbjct: 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT-ALHYAAQVSNXPIVKYLVGEKGSNKD 307
Query: 224 YRDKQGSTILHAAAGRGQVEVVKDLI---ASFDIINSTDH 260
+D+ G T + AA G++EVV LI AS + +++TDH
Sbjct: 308 KQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDH 347
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 31/115 (26%)
Query: 199 VHAAARGGNLKILKELLEN------------------CT----DVLTYRDKQGSTI---- 232
+H A GG+L +K LL++ C D + + G+++
Sbjct: 40 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 99
Query: 233 -----LHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALI 282
+H AA RG VE V LIA I+ TPL++A Q A V+ L+
Sbjct: 100 DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL 154
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 276 AVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMED 335
+V+ I S+ + + +GET LH A + R D +L++ A I
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAAR------YSRSDAAKRLLEASADAXI----- 50
Query: 336 IINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383
++N GRT LH A++ + + Q+L+ + +++ R +DG T L
Sbjct: 51 ----QDNMGRTPLHAAVSADAQ-GVFQILLRNRATDLDARMHDGTTPL 93
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 226 DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285
D+ G T LH AA + + K L+ + D+ G TPLH A V + L+
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 286 PSMISVKNTSGETFL 300
+ + + G T L
Sbjct: 79 ATDLDARMHDGTTPL 93
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+HAA + + LL N L R G+T L AA +++DLI S +N+
Sbjct: 59 LHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAV 118
Query: 259 DHQGNTPLH 267
D G + LH
Sbjct: 119 DDLGKSALH 127
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 228 QGSTILHAAAGRGQVEVVKDLI---------ASFDIINSTD-----HQGNTPLHIAAYRG 273
+G T LH A R +V L+ A+ D T + G PL +AA
Sbjct: 100 KGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159
Query: 274 QPAVVEALILAS--PSMISVKNTSGETFLHSAV 304
Q A+V+ L+ S P+ IS +++ G T LH+ V
Sbjct: 160 QLAIVKFLLQNSWQPADISARDSVGNTVLHALV 192
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ 261
A G+ + LL++ V D ++ +H AA RG VE V LIA I+
Sbjct: 132 ACVSGSWDCVNLLLQHGASVQPESDL--ASPIHEAARRGHVECVNSLIAYGGNIDHKISH 189
Query: 262 GNTPLHIAAYRGQPAVVEALI 282
TPL++A Q A V+ L+
Sbjct: 190 LGTPLYLACENQQRACVKKLL 210
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 221 VLTYRDKQGSTILHAAAGRGQVEVVKDLIASF----DIINSTDHQGNTPLHIAAYRGQPA 276
V Y + G T LH A Q E D + F + ++ + G T LH+AA G+ +
Sbjct: 1 VFGYVTEDGDTALHLAVIH-QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59
Query: 277 VVEALILASPSMISVKNTSGETFLHSAV 304
VE L A ++ V G T LH A
Sbjct: 60 TVEKLYAAGAGVL-VAERGGHTALHLAC 86
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 13/206 (6%)
Query: 220 DVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVE 279
+ L ++ G T LH AA G+ V+ L A+ + + G+T LH+A A
Sbjct: 36 EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVR--AHTC 93
Query: 280 ALILASPSMISVKNTSGETFLHSA--VSGFQTYAFRRLDRQVKLM-KQLASGQIFNMEDI 336
A +L P ++ S +T+L + + ++A +D Q ++ + + ++
Sbjct: 94 ACVLLQPRPSHPRDAS-DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-- 150
Query: 337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSD 396
+ A+N DG T LH+A+ + E+V+LL A + G T L L + Q+AS
Sbjct: 151 LEAENYDGHTPLHVAVI-HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA-QAAS-- 206
Query: 397 ILIRHLISAGGIFGCQDYSARRAIAS 422
++ L+ AG + Y R + S
Sbjct: 207 -VLELLLKAGADPTARMYGGRTPLGS 231
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 221 VLTYRDKQGSTILHAAAGRGQVEVVKDLIASF----DIINSTDHQGNTPLHIAAYRGQPA 276
V Y + G T LH A Q E D + F + ++ + G T LH+AA G+ +
Sbjct: 1 VFGYVTEDGDTALHLAVIH-QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59
Query: 277 VVEALILASPSMISVKNTSGETFLHSAV 304
VE L A ++ V G T LH A
Sbjct: 60 TVEKLYAAGAGVL-VAERGGHTALHLAC 86
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 13/206 (6%)
Query: 220 DVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVE 279
+ L ++ G T LH AA G+ V+ L A+ + + G+T LH+A A
Sbjct: 36 EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVR--AHTC 93
Query: 280 ALILASPSMISVKNTSGETFLHSA--VSGFQTYAFRRLDRQVKLM-KQLASGQIFNMEDI 336
A +L P ++ S +T+L + + ++A +D Q ++ + + ++
Sbjct: 94 ACVLLQPRPSHPRDAS-DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-- 150
Query: 337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSD 396
+ A+N DG T LH+A+ + E+V+LL A + G T L L + Q+AS
Sbjct: 151 LEAENYDGHTPLHVAVI-HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA-QAAS-- 206
Query: 397 ILIRHLISAGGIFGCQDYSARRAIAS 422
++ L+ AG + Y R + S
Sbjct: 207 -VLELLLKAGADPTARMYGGRTPLGS 231
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 232 ILHAA---AGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
+LH A A + + +V +I + +++ GNT LH AA QP ++ L+L ++
Sbjct: 174 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLK-LLLKGRAL 232
Query: 289 ISVKNTSGETFLHSA 303
+ N +GET L A
Sbjct: 233 VGTVNEAGETALDIA 247
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 232 ILHAA---AGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM 288
+LH A A + + +V +I + +++ GNT LH AA QP ++ L+L ++
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLK-LLLKGRAL 251
Query: 289 ISVKNTSGETFL 300
+ N +GET L
Sbjct: 252 VGTVNEAGETAL 263
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST 258
+H AA+ G+ + LL R K T LH AA G +V+ L+ +N+
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK 96
Query: 259 DHQGNTPLHIAAYRGQPAVVEALI 282
D T LH A VVE LI
Sbjct: 97 DMLKMTALHWATEHNHQEVVELLI 120
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ 261
AAR G ++ L+ N T D G++ LH AA G + L+ + ++
Sbjct: 9 AARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66
Query: 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303
TPLH+AA G +VE L L + ++ K+ T LH A
Sbjct: 67 DRTPLHMAASEGHANIVEVL-LKHGADVNAKDMLKMTALHWA 107
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 202 AARGGNLKILKELL--ENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIAS-----FDI 254
AA+ +++ L +LL E C + R G T LH AA +E L+ + F+
Sbjct: 10 AAKENDVQALSKLLKFEGCE--VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEP 67
Query: 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETF 299
+ S ++G T LHIA +V AL LA + +S + T G F
Sbjct: 68 MTSELYEGQTALHIAVINQNVNLVRAL-LARGASVSARAT-GSVF 110
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 233 LHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL-------AS 285
L AA RGQVE V+ L+ + N+ + G P+ + G V E L+L A
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCAD 74
Query: 286 PSMIS--VKNTSGETFLHSAV 304
P+ ++ V + + E FL + V
Sbjct: 75 PATLTRPVHDAAREGFLDTLV 95
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 184 EEIPSVYKWEMMNRAVHAAARG---GNLKILKELLENCTDVLTYRDKQ---GSTILHAAA 237
E+IP E A+H A R +L I+ L++N ++ DKQ GST LH
Sbjct: 158 EKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL----DKQTGKGSTALHYCC 213
Query: 238 GRGQVEVVKDLI---ASFDIINSTDHQGNTPLHIA 269
E +K L+ AS +I N + G TPL IA
Sbjct: 214 LTDNAECLKLLLRGKASIEIANES---GETPLDIA 245
>pdb|2ESS|A Chain A, Crystal Structure Of An Acyl-Acp Thioesterase
(Np_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.90 A Resolution
Length = 248
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 36 NGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAK--CRSKVARKLFLEC 93
NGH + +R + I I+L +RIRR E + E F D C + +E
Sbjct: 173 NGHVNSIRYIEHILDLFPIELYQTKRIRRFEXAYVAESYFGDELSFFCDEVSENEFHVEV 232
Query: 94 KSKNGKNSLIRA 105
K KNG + R+
Sbjct: 233 K-KNGSEVVCRS 243
>pdb|2CFO|A Chain A, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
pdb|2CFO|B Chain B, Non-discriminating Glutamyl-trna Synthetase From
Thermosynechococcus Elongatus In Complex With Glu
Length = 492
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 226 DKQGSTILHAAAGRGQ--------VEVVKDLIASF-DIINSTDHQGNTPLHIAAY 271
D G ++ AA RG+ V VV D+ D+I DH GNTP I Y
Sbjct: 170 DLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLY 224
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 41 LVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQF 75
+++EL R DG H++K ++ ++ W +E+F
Sbjct: 312 VIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEF 346
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant
Length = 839
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 41 LVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQF 75
+++EL R DG H++K ++ ++ W +E+F
Sbjct: 312 VIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEF 346
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant
Length = 839
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 41 LVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQF 75
+++EL R DG H++K ++ ++ W +E+F
Sbjct: 312 VIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEF 346
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 41 LVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQF 75
+++EL R DG H++K ++ ++ W +E+F
Sbjct: 312 VIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEF 346
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant
Length = 839
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 41 LVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQF 75
+++EL R DG H++K ++ ++ W +E+F
Sbjct: 312 VIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEF 346
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 41 LVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQF 75
+++EL R DG H++K ++ ++ W +E+F
Sbjct: 312 VIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEF 346
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|1YGE|A Chain A, Lipoxygenase-1 (Soybean) At 100k
pdb|2SBL|A Chain A, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
Length = 839
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 41 LVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQF 75
+++EL R DG H++K ++ ++ W +E+F
Sbjct: 312 VIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEF 346
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 41 LVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQF 75
+++EL R DG H++K ++ ++ W +E+F
Sbjct: 312 VIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEF 346
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 41 LVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQF 75
+++EL R DG H++K ++ ++ W +E+F
Sbjct: 312 VIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEF 346
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant
Length = 839
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 41 LVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQF 75
+++EL R DG H++K ++ ++ W +E+F
Sbjct: 312 VIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEF 346
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement
Length = 839
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 41 LVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQF 75
+++EL R DG H++K ++ ++ W +E+F
Sbjct: 312 VIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEF 346
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant
Length = 839
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 41 LVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQF 75
+++EL R DG H++K ++ ++ W +E+F
Sbjct: 312 VIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEF 346
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Query: 226 DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285
D + +H AA +GQ + V+ LI + + G T LH+A G V A LAS
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG--CVDTAKYLAS 74
Query: 286 PSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNM-EDIIN-----A 339
+ G+ +H AV +T L K Q + E +N
Sbjct: 75 VGEVH-SLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHV 133
Query: 340 KNNDGRTALHMAI-TGNVHLELVQLLM 365
K+ G+TALH + G +LE +++L+
Sbjct: 134 KHCKGQTALHWCVGLGPEYLEXIKILV 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,149,598
Number of Sequences: 62578
Number of extensions: 764376
Number of successful extensions: 2413
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1704
Number of HSP's gapped (non-prelim): 409
length of query: 677
length of database: 14,973,337
effective HSP length: 105
effective length of query: 572
effective length of database: 8,402,647
effective search space: 4806314084
effective search space used: 4806314084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)