Query 005790
Match_columns 677
No_of_seqs 544 out of 3289
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 07:29:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 8E-58 2.7E-62 503.3 40.6 372 24-465 12-383 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 3.2E-54 1.1E-58 474.6 42.3 359 23-451 44-402 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 2.8E-45 9.7E-50 389.2 32.9 297 107-455 24-330 (337)
4 4g8k_A 2-5A-dependent ribonucl 100.0 5.7E-45 1.9E-49 386.9 31.6 303 24-412 23-330 (337)
5 1wdy_A 2-5A-dependent ribonucl 100.0 3.2E-42 1.1E-46 354.5 29.3 271 107-414 4-284 (285)
6 3utm_A Tankyrase-1; tankyrase, 100.0 9.7E-42 3.3E-46 362.1 26.6 301 98-452 14-335 (351)
7 1wdy_A 2-5A-dependent ribonucl 100.0 7.6E-41 2.6E-45 344.2 29.8 266 141-457 4-284 (285)
8 3utm_A Tankyrase-1; tankyrase, 100.0 8.8E-40 3E-44 347.0 28.9 320 25-425 23-348 (351)
9 2fo1_E LIN-12 protein; beta-ba 100.0 4.6E-41 1.6E-45 362.5 19.1 320 27-452 38-372 (373)
10 3d9h_A CDNA FLJ77766, highly s 100.0 6.4E-40 2.2E-44 340.1 24.5 260 105-454 12-282 (285)
11 3d9h_A CDNA FLJ77766, highly s 100.0 2.4E-39 8.3E-44 335.8 24.8 268 25-411 14-282 (285)
12 2xai_A ASB-9, ankyrin repeat a 100.0 2.3E-39 7.7E-44 331.4 21.8 252 24-362 1-255 (261)
13 2fo1_E LIN-12 protein; beta-ba 100.0 4.3E-40 1.5E-44 354.8 17.0 284 25-408 65-371 (373)
14 2xai_A ASB-9, ankyrin repeat a 100.0 1.7E-38 5.8E-43 324.9 21.3 238 107-425 2-247 (261)
15 3ljn_A Hypothetical protein; a 100.0 1.5E-39 5.2E-44 348.8 14.2 257 97-394 9-304 (364)
16 1yyh_A HN1;, notch 1, ankyrin 100.0 2.3E-38 7.9E-43 322.2 21.9 232 99-405 1-245 (253)
17 3b7b_A Euchromatic histone-lys 100.0 3.8E-37 1.3E-41 309.1 27.2 234 99-405 2-236 (237)
18 3ljn_A Hypothetical protein; a 100.0 2.3E-38 7.9E-43 339.6 17.5 283 24-375 18-318 (364)
19 3aji_A 26S proteasome non-ATPa 100.0 7.3E-37 2.5E-41 305.8 22.6 228 106-409 4-231 (231)
20 1oy3_D Transcription factor in 100.0 3.2E-37 1.1E-41 317.4 20.1 253 191-473 5-272 (282)
21 1yyh_A HN1;, notch 1, ankyrin 100.0 7.5E-37 2.6E-41 311.1 22.1 226 24-285 8-246 (253)
22 1k1a_A B-cell lymphoma 3-encod 100.0 5.9E-37 2E-41 308.1 20.7 230 102-407 3-240 (241)
23 4b93_B Ankyrin repeat domain-c 100.0 1.5E-37 5.1E-42 319.6 16.2 233 104-410 7-246 (269)
24 3aji_A 26S proteasome non-ATPa 100.0 1.9E-36 6.5E-41 302.8 21.7 226 195-452 6-231 (231)
25 3b7b_A Euchromatic histone-lys 100.0 1.2E-35 4.2E-40 298.1 25.6 215 23-309 8-223 (237)
26 1oy3_D Transcription factor in 100.0 2.7E-36 9.3E-41 310.5 20.0 249 25-307 8-269 (282)
27 1k1a_A B-cell lymphoma 3-encod 100.0 3E-36 1E-40 303.0 19.3 228 191-450 5-240 (241)
28 4b93_B Ankyrin repeat domain-c 100.0 3.7E-36 1.3E-40 309.2 19.4 223 21-307 6-229 (269)
29 2dzn_A Probable 26S proteasome 100.0 1.6E-35 5.6E-40 295.1 23.4 215 108-390 2-219 (228)
30 2dzn_A Probable 26S proteasome 100.0 1.2E-35 4.2E-40 296.0 20.3 220 195-448 2-227 (228)
31 3eu9_A Huntingtin-interacting 100.0 8.4E-35 2.9E-39 291.4 24.3 234 102-411 3-238 (240)
32 3eu9_A Huntingtin-interacting 100.0 1.5E-34 5.2E-39 289.6 24.4 235 136-454 3-238 (240)
33 2f8y_A Notch homolog 1, transl 100.0 3.1E-35 1.1E-39 292.3 18.8 219 205-454 1-219 (223)
34 1s70_B 130 kDa myosin-binding 100.0 5.2E-35 1.8E-39 304.1 21.1 252 151-424 6-273 (299)
35 3kea_A K1L; tropism, ANK repea 100.0 2.8E-35 9.6E-40 305.2 17.6 231 136-419 25-257 (285)
36 2f8y_A Notch homolog 1, transl 100.0 1.5E-34 5.1E-39 287.3 21.5 217 119-410 2-218 (223)
37 3kea_A K1L; tropism, ANK repea 100.0 1.9E-35 6.7E-40 306.4 14.9 238 154-456 11-251 (285)
38 1sw6_A Regulatory protein SWI6 100.0 7.3E-36 2.5E-40 315.9 6.5 214 197-425 99-325 (327)
39 1sw6_A Regulatory protein SWI6 100.0 7.1E-36 2.4E-40 316.0 6.0 254 82-390 30-327 (327)
40 1s70_B 130 kDa myosin-binding 100.0 3.2E-33 1.1E-37 290.6 22.9 237 23-305 37-274 (299)
41 2rfa_A Transient receptor pote 100.0 2.7E-33 9.4E-38 280.2 21.3 213 195-456 3-227 (232)
42 1ikn_D Protein (I-kappa-B-alph 100.0 1E-33 3.5E-38 284.3 11.1 217 191-467 4-227 (236)
43 2rfa_A Transient receptor pote 100.0 6.1E-32 2.1E-36 270.3 22.3 205 26-286 3-221 (232)
44 1ikn_D Protein (I-kappa-B-alph 100.0 2E-33 6.9E-38 282.2 10.5 215 103-388 3-228 (236)
45 3hra_A Ankyrin repeat family p 100.0 2.1E-31 7E-36 260.2 21.3 191 195-406 5-201 (201)
46 2pnn_A Transient receptor pote 100.0 3E-32 1E-36 280.0 13.2 224 25-300 12-271 (273)
47 4gpm_A Engineered protein OR26 100.0 3.9E-31 1.3E-35 252.0 19.7 159 197-411 6-164 (169)
48 2etb_A Transient receptor pote 100.0 5.2E-32 1.8E-36 275.4 13.3 209 25-286 1-245 (256)
49 3hra_A Ankyrin repeat family p 100.0 2.1E-30 7.3E-35 253.0 23.6 192 106-369 3-201 (201)
50 2pnn_A Transient receptor pote 100.0 1.6E-31 5.5E-36 274.6 15.3 233 98-383 3-271 (273)
51 4gpm_A Engineered protein OR26 100.0 1.2E-30 4E-35 248.8 19.2 159 231-454 6-164 (169)
52 2etb_A Transient receptor pote 100.0 2.6E-31 9E-36 270.2 11.0 195 195-409 2-247 (256)
53 3jxi_A Vanilloid receptor-rela 100.0 1.6E-30 5.5E-35 264.9 13.1 210 25-286 4-249 (260)
54 2aja_A Ankyrin repeat family p 100.0 5.4E-31 1.8E-35 282.7 0.2 301 33-394 41-364 (376)
55 4hbd_A KN motif and ankyrin re 100.0 4.1E-29 1.4E-33 257.6 14.1 194 71-286 76-274 (276)
56 3jxi_A Vanilloid receptor-rela 100.0 9.3E-30 3.2E-34 259.2 8.7 197 194-410 4-252 (260)
57 3v30_A DNA-binding protein rfx 100.0 1.2E-28 4.1E-33 234.7 15.5 169 196-419 3-171 (172)
58 3v30_A DNA-binding protein rfx 100.0 4.7E-28 1.6E-32 230.6 16.9 170 108-299 2-171 (172)
59 2vge_A RELA-associated inhibit 100.0 1.5E-29 5E-34 253.6 5.9 199 159-395 1-204 (229)
60 2rfm_A Putative ankyrin repeat 100.0 1.3E-27 4.5E-32 232.0 17.6 163 101-285 28-190 (192)
61 4hbd_A KN motif and ankyrin re 100.0 4.7E-28 1.6E-32 249.7 14.5 193 196-449 77-273 (276)
62 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.3E-27 4.3E-32 225.0 16.1 156 196-408 6-162 (162)
63 2y1l_E Darpin-8.4; hydrolase-i 99.9 3.9E-27 1.3E-31 223.9 19.2 157 194-406 13-169 (169)
64 2aja_A Ankyrin repeat family p 99.9 2E-30 6.8E-35 278.3 -5.4 286 81-425 44-358 (376)
65 2rfm_A Putative ankyrin repeat 99.9 1.6E-27 5.4E-32 231.4 15.2 157 194-406 34-190 (192)
66 3v31_A Ankyrin repeat family A 99.9 6.7E-27 2.3E-31 221.5 18.6 159 106-286 1-159 (167)
67 3f6q_A Integrin-linked protein 99.9 2.5E-27 8.6E-32 227.3 15.7 167 195-416 5-171 (179)
68 3v31_A Ankyrin repeat family A 99.9 9.5E-27 3.3E-31 220.4 18.5 158 195-408 3-160 (167)
69 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.4E-26 4.9E-31 220.0 19.3 158 106-285 12-169 (169)
70 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.1E-26 3.7E-31 218.6 17.0 157 107-286 4-161 (162)
71 3twr_A Tankyrase-2; ankyrin re 99.9 6.5E-27 2.2E-31 221.1 14.2 161 104-286 4-164 (165)
72 3f6q_A Integrin-linked protein 99.9 1.3E-26 4.3E-31 222.4 16.0 168 107-296 4-171 (179)
73 3twr_A Tankyrase-2; ankyrin re 99.9 1.1E-26 3.8E-31 219.5 15.2 159 193-407 6-164 (165)
74 2vge_A RELA-associated inhibit 99.9 9.5E-29 3.2E-33 247.7 0.0 201 124-365 1-208 (229)
75 1awc_B Protein (GA binding pro 99.9 4.9E-26 1.7E-30 212.4 18.5 151 108-281 2-152 (153)
76 1awc_B Protein (GA binding pro 99.9 4.6E-26 1.6E-30 212.7 18.1 146 196-394 3-148 (153)
77 1bd8_A P19INK4D CDK4/6 inhibit 99.9 5.8E-26 2E-30 212.3 18.2 154 108-284 2-155 (156)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.7E-26 5.9E-31 232.6 10.3 169 194-419 4-175 (239)
79 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.1E-25 7.1E-30 208.5 16.9 146 195-394 2-148 (156)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 6.4E-26 2.2E-30 228.4 9.9 179 106-308 3-193 (239)
81 1d9s_A Cyclin-dependent kinase 99.9 3.4E-24 1.1E-28 196.0 11.3 133 219-408 3-136 (136)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 3.7E-24 1.2E-28 200.6 11.0 139 194-385 11-150 (156)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 1.7E-24 5.7E-29 202.9 8.5 144 224-423 7-151 (156)
84 3t8k_A Uncharacterized protein 99.9 4.2E-24 1.4E-28 206.7 11.3 159 196-401 7-176 (186)
85 1d9s_A Cyclin-dependent kinase 99.9 1.6E-23 5.4E-28 191.4 12.5 133 99-253 3-135 (136)
86 3t8k_A Uncharacterized protein 99.9 1E-23 3.6E-28 203.9 9.6 155 108-285 6-177 (186)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 3.4E-22 1.2E-26 178.8 15.6 126 228-408 1-126 (126)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 5E-22 1.7E-26 181.4 15.5 124 192-366 11-134 (136)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 9.6E-22 3.3E-26 175.8 15.5 125 195-371 2-126 (126)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 6.6E-22 2.2E-26 180.6 13.6 126 139-285 11-136 (136)
91 3ui2_A Signal recognition part 99.9 1.3E-21 4.4E-26 197.6 14.6 143 192-371 42-185 (244)
92 3deo_A Signal recognition part 99.9 2.1E-21 7.2E-26 186.9 14.8 140 191-366 40-180 (183)
93 3c5r_A BARD-1, BRCA1-associate 99.9 2.9E-22 1E-26 183.0 7.9 132 218-406 1-132 (137)
94 3c5r_A BARD-1, BRCA1-associate 99.9 2.6E-21 8.9E-26 176.7 12.4 124 192-327 7-130 (137)
95 2b0o_E UPLC1; arfgap, structur 99.8 8E-21 2.8E-25 197.9 15.2 109 196-305 152-268 (301)
96 3aaa_C Myotrophin, protein V-1 99.8 1.4E-20 4.8E-25 168.5 13.4 110 194-305 6-115 (123)
97 2b0o_E UPLC1; arfgap, structur 99.8 1.2E-20 4.1E-25 196.6 14.5 144 144-309 153-299 (301)
98 3ehr_A Osteoclast-stimulating 99.8 1.7E-21 5.8E-26 193.3 7.2 134 226-413 70-203 (222)
99 3ehr_A Osteoclast-stimulating 99.8 5.8E-21 2E-25 189.5 10.8 114 190-305 68-182 (222)
100 3ui2_A Signal recognition part 99.8 1.6E-20 5.3E-25 189.6 11.1 142 105-285 42-183 (244)
101 3deo_A Signal recognition part 99.8 1.9E-20 6.4E-25 180.2 11.1 142 104-284 40-181 (183)
102 3aaa_C Myotrophin, protein V-1 99.8 3.7E-20 1.3E-24 165.8 9.9 110 140-270 5-114 (123)
103 3jue_A Arfgap with coiled-coil 99.8 1.2E-19 4.1E-24 193.8 13.8 161 195-409 199-365 (368)
104 1dcq_A PYK2-associated protein 99.8 1.9E-19 6.5E-24 185.4 14.6 207 67-305 62-272 (278)
105 3lvq_E ARF-GAP with SH3 domain 99.8 1.5E-19 5.2E-24 201.7 14.6 87 198-285 135-230 (497)
106 1dcq_A PYK2-associated protein 99.8 4E-19 1.4E-23 182.9 16.4 194 23-254 63-263 (278)
107 3jue_A Arfgap with coiled-coil 99.8 1.6E-19 5.6E-24 192.8 12.2 166 225-453 195-366 (368)
108 3lvq_E ARF-GAP with SH3 domain 99.8 4E-19 1.4E-23 198.3 15.3 135 229-424 132-275 (497)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.8 9.5E-19 3.2E-23 148.4 12.4 91 195-286 2-92 (93)
110 2l6b_A NR1C; ankyrin, consensu 99.8 1.2E-18 3.9E-23 153.9 9.3 109 224-383 4-112 (115)
111 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.4E-18 8.3E-23 145.9 10.5 93 343-451 1-93 (93)
112 2l6b_A NR1C; ankyrin, consensu 99.7 1.6E-18 5.3E-23 153.0 7.5 109 190-300 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 5.1E-16 1.7E-20 136.0 11.2 91 190-281 19-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 6E-15 2.1E-19 129.1 9.6 92 223-315 18-109 (110)
115 4g26_A Pentatricopeptide repea 55.2 6.6 0.00023 42.7 3.4 101 156-283 90-199 (501)
116 4g26_A Pentatricopeptide repea 46.4 39 0.0013 36.5 7.8 97 97-216 99-199 (501)
117 3mkq_B Coatomer subunit alpha; 33.3 1E+02 0.0035 28.2 7.1 22 70-91 7-28 (177)
118 3gvo_A Pumilio 2, pumilio homo 27.4 1.2E+02 0.0042 30.7 7.6 168 102-284 67-239 (351)
119 1gp8_A Protein (scaffolding pr 24.2 48 0.0016 21.9 2.2 18 30-47 17-34 (40)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=8e-58 Score=503.31 Aligned_cols=372 Identities=22% Similarity=0.232 Sum_probs=340.4
Q ss_pred cccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchh
Q 005790 24 WWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLI 103 (677)
Q Consensus 24 ~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~ 103 (677)
..|.||||+||..|++++|++|+++|++++.. ...+.++||.|+..++.+++++|++ .|++++.
T Consensus 12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~------------~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~ 75 (437)
T 1n11_A 12 ESGLTPLHVASFMGHLPIVKNLLQRGASPNVS------------NVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNA 75 (437)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHHTTCCSCCS------------SSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSC
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC------------CCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCC
Confidence 35789999999999999999999999998743 5578999999999999999999999 8999999
Q ss_pred hcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhh
Q 005790 104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHI 183 (677)
Q Consensus 104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~ 183 (677)
++..|.||||+|+..|+.++|++|+++|+ +++..+..|.||||+|+ ..|+.+++++|+++|++++..+..
T Consensus 76 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~-------- 145 (437)
T 1n11_A 76 KAKDDQTPLHCAARIGHTNMVKLLLENNA-NPNLATTAGHTPLHIAA-REGHVETVLALLEKEASQACMTKK-------- 145 (437)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHHTC-CTTCCCTTCCCHHHHHH-HHTCHHHHHHHHHTTCCSCCCCTT--------
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHhCCC-CCCCCCCCCCcHHHHHH-HcCCHHHHHHHHhCCCCCcCCCCC--------
Confidence 99999999999999999999999999997 56678889999999996 679999999999999988765543
Q ss_pred hcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC
Q 005790 184 EEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGN 263 (677)
Q Consensus 184 ~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~ 263 (677)
|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 146 -----------g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 213 (437)
T 1n11_A 146 -----------GFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGY 213 (437)
T ss_dssp -----------SCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCC
T ss_pred -----------CCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCC
Confidence 468999999999999999999999998 78899999999999999999999999999999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCC
Q 005790 264 TPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNND 343 (677)
Q Consensus 264 tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~ 343 (677)
||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+.. ++.+++++|++.+ ++++..+..
T Consensus 214 t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~----------g~~~~v~~Ll~~~-----~~~~~~~~~ 277 (437)
T 1n11_A 214 TPLHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQE----------GHAEMVALLLSKQ-----ANGNLGNKS 277 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHT----------TCHHHHHHHHTTT-----CCTTCCCTT
T ss_pred CHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHC----------CCHHHHHHHHhcC-----CCCCCCCCC
Confidence 9999999999999999999999 67899999999999999994 5566777777655 558889999
Q ss_pred CchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHH
Q 005790 344 GRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASH 423 (677)
Q Consensus 344 G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~a 423 (677)
|.||||+|+..+ +.+++++|++ .|+++|.+|..|+||||+|+..++.+ ++++|+++|+++|.+|..|+||||+|
T Consensus 278 g~t~L~~A~~~~-~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~gad~n~~~~~g~t~L~~A 351 (437)
T 1n11_A 278 GLTPLHLVAQEG-HVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIK----LVKFLLQHQADVNAKTKLGYSPLHQA 351 (437)
T ss_dssp CCCHHHHHHHHT-CHHHHHHHHH-HTCCTTCCCSSCCCHHHHHHHSSCSH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCHHHHHHHcC-CHHHHHHHHh-CCccCCCCCCCCCCHHHHHHHcCcHH----HHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 999999999988 9999999999 89999999999999999999999988 78999999999999999999999999
Q ss_pred HHHhCCCCCCCCccchhhHHHHHHcCCCCCCCCCCCCCCCCC
Q 005790 424 IKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGM 465 (677)
Q Consensus 424 l~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~~~~g~t~~~~ 465 (677)
+.... .+++++|+++||+++..+..|.|+...
T Consensus 352 ~~~g~----------~~iv~~Ll~~ga~~~~~~~~g~t~l~~ 383 (437)
T 1n11_A 352 AQQGH----------TDIVTLLLKNGASPNEVSSDGTTPLAI 383 (437)
T ss_dssp HHTTC----------HHHHHHHHHTTCCSCCCCSSSCCHHHH
T ss_pred HHCCh----------HHHHHHHHHCcCCCCCCCCCCCCHHHH
Confidence 98533 889999999999999999888875543
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.2e-54 Score=474.63 Aligned_cols=359 Identities=25% Similarity=0.275 Sum_probs=327.8
Q ss_pred ccccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCch
Q 005790 23 QWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSL 102 (677)
Q Consensus 23 ~~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~ 102 (677)
+..|.||||+||..|+.++|++|+++|++++. ....+.||||+|+..++.+++++|++ .|++++
T Consensus 44 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~ 107 (437)
T 1n11_A 44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNA------------KAKDDQTPLHCAARIGHTNMVKLLLE----NNANPN 107 (437)
T ss_dssp SSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC------------CCTTSCCHHHHHHHHTCHHHHHHHHH----HTCCTT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC------------CCCCCCCHHHHHHHCCCHHHHHHHHh----CCCCCC
Confidence 34578999999999999999999999999874 35678999999999999999999999 899999
Q ss_pred hhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhh
Q 005790 103 IRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEH 182 (677)
Q Consensus 103 ~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~ 182 (677)
..+..|.||||+|+..|+.++|++|+++++ .....+..|.||||+|+ ..|+.+++++|+++|++++..+..
T Consensus 108 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~------- 178 (437)
T 1n11_A 108 LATTAGHTPLHIAAREGHVETVLALLEKEA-SQACMTKKGFTPLHVAA-KYGKVRVAELLLERDAHPNAAGKN------- 178 (437)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CSCCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCSS-------
T ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCcCCCCCCCCHHHHHH-HcCCHHHHHHHHhCCCCCCCCCCC-------
Confidence 999999999999999999999999999987 45567788999999985 779999999999999998876544
Q ss_pred hhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCC
Q 005790 183 IEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQG 262 (677)
Q Consensus 183 ~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g 262 (677)
|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus 179 ------------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 245 (437)
T 1n11_A 179 ------------GLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245 (437)
T ss_dssp ------------CCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred ------------CCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence 378999999999999999999999998 7788999999999999999999999999999999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCC
Q 005790 263 NTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNN 342 (677)
Q Consensus 263 ~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~ 342 (677)
.||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+. .++.+++++|++.+ ++++.+|.
T Consensus 246 ~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~----------~~~~~~~~~Ll~~g-----~~~~~~~~ 309 (437)
T 1n11_A 246 VTPLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTPLHLVAQ----------EGHVPVADVLIKHG-----VMVDATTR 309 (437)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHH----------HTCHHHHHHHHHHT-----CCTTCCCS
T ss_pred CCHHHHHHHCCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHH----------cCCHHHHHHHHhCC-----ccCCCCCC
Confidence 99999999999999999999998 6789999999999999999 45566777777655 55899999
Q ss_pred CCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHH
Q 005790 343 DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIAS 422 (677)
Q Consensus 343 ~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~ 422 (677)
.|.||||+|+..+ +.++|++|++ .|+|+|.+|..|.||||+|+..++.+ ++++|+++|++++.+|..|+|||++
T Consensus 310 ~g~t~L~~A~~~g-~~~~v~~Ll~-~gad~n~~~~~g~t~L~~A~~~g~~~----iv~~Ll~~ga~~~~~~~~g~t~l~~ 383 (437)
T 1n11_A 310 MGYTPLHVASHYG-NIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTD----IVTLLLKNGASPNEVSSDGTTPLAI 383 (437)
T ss_dssp SCCCHHHHHHHSS-CSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCSCCCCSSSCCHHHH
T ss_pred CCCCHHHHHHHcC-cHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHCChHH----HHHHHHHCcCCCCCCCCCCCCHHHH
Confidence 9999999999988 9999999999 99999999999999999999999987 7999999999999999999999999
Q ss_pred HHHHhCCCCCCCCccchhhHHHHHHcCCC
Q 005790 423 HIKMLGNGSSPGTSFRISDTEIFLYTGID 451 (677)
Q Consensus 423 al~~~~~~~~~~~~~~~~~v~~LL~~Gad 451 (677)
|..... .+++++|......
T Consensus 384 A~~~g~----------~~~~~~l~~~~~~ 402 (437)
T 1n11_A 384 AKRLGY----------ISVTDVLKVVTDE 402 (437)
T ss_dssp HHHTTC----------HHHHHHHHHHCCC
T ss_pred HHHcCc----------HHHHHHHHhcccc
Confidence 987533 7788888776543
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.8e-45 Score=389.23 Aligned_cols=297 Identities=25% Similarity=0.281 Sum_probs=259.8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcc
Q 005790 107 YGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEI 186 (677)
Q Consensus 107 ~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~ 186 (677)
.|.|+||.||..|++++|++||++|+++....+..|+||||+|| ..|+.++|++|+++|++++..+..+
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~-~~g~~~iv~~Ll~~ga~~~~~~~~~---------- 92 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV-QMSREDIVELLLRHGADPVLRKKNG---------- 92 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTTC----------
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHH-HcCCHHHHHHHHHcCCchhhhccCC----------
Confidence 46799999999999999999999998554444456999999985 7799999999999999998766543
Q ss_pred hhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCC--------
Q 005790 187 PSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST-------- 258 (677)
Q Consensus 187 ~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~-------- 258 (677)
.++++.++..+...++..+++.++++ +..|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 93 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~ 162 (337)
T 4g8k_A 93 ---------ATPFILAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE 162 (337)
T ss_dssp ---------CCHHHHHHHHTCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC----
T ss_pred ---------CchhHHHHhcccchhhHHhhhccchh-hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccc
Confidence 67999999999999999999999998 789999999999999999999999999999998754
Q ss_pred --CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhh
Q 005790 259 --DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI 336 (677)
Q Consensus 259 --d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~ 336 (677)
+..|.||||+|+..|+.++|++||++.+++++..+..|.|+|+.++..+.. ....+++++|++.+ ++
T Consensus 163 ~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~------~~~~~i~~lLl~~g-----ad 231 (337)
T 4g8k_A 163 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD------SDVEAITHLLLDHG-----AD 231 (337)
T ss_dssp -CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT------TTHHHHHHHHHHTT-----CC
T ss_pred cccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc------ccHHHHHHHHHHCC-----CC
Confidence 446899999999999999999999876588999999999999988764432 23356778887765 56
Q ss_pred hhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccC
Q 005790 337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSA 416 (677)
Q Consensus 337 in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G 416 (677)
+|.+|..|.||||+|+..+ +.++|++|++..|+++|.+|.+|+||||+|+..|+.+ ++++|+++||++|.+
T Consensus 232 ~n~~d~~g~t~L~~a~~~~-~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~----iv~~Ll~~GAd~n~~---- 302 (337)
T 4g8k_A 232 VNVRGERGKTPLILAVEKK-HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK----IAELLCKRGASTDCG---- 302 (337)
T ss_dssp TTCCCGGGCCHHHHHHHTT-CHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHH----HHHHHHTTSCSSTTC----
T ss_pred CCCcCCCCCCHHHHHHHhh-hhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCC----
Confidence 8999999999999999988 9999999998679999999999999999999999987 799999999999864
Q ss_pred CchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCCC
Q 005790 417 RRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSD 455 (677)
Q Consensus 417 ~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~ 455 (677)
+||++|+.... .++|++||++|||+|..
T Consensus 303 -~~L~~A~~~~~----------~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 303 -DLVMTARRNYD----------HSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp -CHHHHHHHTTC----------HHHHHHHHHTTCCC---
T ss_pred -CHHHHHHHcCC----------HHHHHHHHHCcCCCCCC
Confidence 59999988533 88999999999999864
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=5.7e-45 Score=386.89 Aligned_cols=303 Identities=21% Similarity=0.225 Sum_probs=257.0
Q ss_pred cccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchh
Q 005790 24 WWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLI 103 (677)
Q Consensus 24 ~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~ 103 (677)
..|.||||.||+.|++++|++||++|+++|.. ....+.||||+|+..++.+++++|++ +|++++.
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~-----------~~~~g~TpLh~A~~~g~~~iv~~Ll~----~ga~~~~ 87 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-----------EEEGGWTPLHNAVQMSREDIVELLLR----HGADPVL 87 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCC-----------CTTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTC
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCCCCCcc-----------CCCCCcCHHHHHHHcCCHHHHHHHHH----cCCchhh
Confidence 45789999999999999999999999999753 23458899999999999999999999 9999999
Q ss_pred hcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhh
Q 005790 104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHI 183 (677)
Q Consensus 104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~ 183 (677)
++..+.++++.++..+...++..+++.++ +++..+..|.|||++|+ ..|+.+++++|+++|++++........
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~g~t~l~~A~-~~~~~~~~~~ll~~ga~~~~~~~~~~~----- 160 (337)
T 4g8k_A 88 RKKNGATPFILAAIAGSVKLLKLFLSKGA-DVNECDFYGFTAFMEAA-VYGKVKALKFLYKRGANVNLRRKTKED----- 160 (337)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHTTTC-CTTCBCTTCCBHHHHHH-HTTCHHHHHHHHHTTCCTTCCCCCC-------
T ss_pred hccCCCchhHHHHhcccchhhHHhhhccc-hhhhhccCCCCHHHHHH-HcCcHHHHHHHHHcCCCcchhhccccc-----
Confidence 99999999999999999999999999987 67778999999999985 779999999999999999866544322
Q ss_pred hcchhhhhhhccchHHHHHHhcCCHHHHHHHHh-cCCCccccCCCCCCcHHHHHHHhCC----HHHHHHHHhcCCCCCCC
Q 005790 184 EEIPSVYKWEMMNRAVHAAARGGNLKILKELLE-NCTDVLTYRDKQGSTILHAAAGRGQ----VEVVKDLIASFDIINST 258 (677)
Q Consensus 184 ~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~-~ga~~~~~~d~~g~TpL~~A~~~g~----~eivk~Ll~~ga~in~~ 258 (677)
....+..|.||||+|+..|+.++|++||+ .|+++ +..+..|.|+|++++..++ .+++++|+++|++++.+
T Consensus 161 ----~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~ 235 (337)
T 4g8k_A 161 ----QERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 235 (337)
T ss_dssp -------CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCC
T ss_pred ----cccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCc
Confidence 12234457899999999999999999996 58888 7788899999988876554 46888999999999999
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhh
Q 005790 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIIN 338 (677)
Q Consensus 259 d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in 338 (677)
|..|.||||+|+..|+.+++++|++..+.+ +|
T Consensus 236 d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~------------------------------------------------vn 267 (337)
T 4g8k_A 236 GERGKTPLILAVEKKHLGLVQRLLEQEHIE------------------------------------------------IN 267 (337)
T ss_dssp CGGGCCHHHHHHHTTCHHHHHHHHTSTTCC------------------------------------------------TT
T ss_pred CCCCCCHHHHHHHhhhhHHHHHHHHhcCCc------------------------------------------------cc
Confidence 999999999999999999999988754333 56
Q ss_pred ccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCC
Q 005790 339 AKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQ 412 (677)
Q Consensus 339 ~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~ 412 (677)
.+|..|+||||+|+..| +.++|++||+ +|+|+|.+ +|||+|+..++.+ ++++|+++||++|..
T Consensus 268 ~~d~~G~TpL~~A~~~g-~~~iv~~Ll~-~GAd~n~~-----~~L~~A~~~~~~~----iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 268 DTDSDGKTALLLAVELK-LKKIAELLCK-RGASTDCG-----DLVMTARRNYDHS----LVKVLLSHGAKEDFH 330 (337)
T ss_dssp CBCTTSCBHHHHHHHTT-CHHHHHHHHT-TSCSSTTC-----CHHHHHHHTTCHH----HHHHHHHTTCCC---
T ss_pred CcCCCCCCHHHHHHHcC-CHHHHHHHHH-CCCCCCCC-----CHHHHHHHcCCHH----HHHHHHHCcCCCCCC
Confidence 67888899999999888 9999999999 89988764 5999999999877 689999999998863
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.2e-42 Score=354.54 Aligned_cols=271 Identities=26% Similarity=0.294 Sum_probs=244.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcc
Q 005790 107 YGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEI 186 (677)
Q Consensus 107 ~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~ 186 (677)
.|.||||+|+..|+.++|++|++.++......+..|.||||+|+ ..|+.+++++|+++|++++..+..
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~----------- 71 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV-QMSREDIVELLLRHGADPVLRKKN----------- 71 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT-----------
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHH-HcCCHHHHHHHHHcCCCCcccCCC-----------
Confidence 47899999999999999999999998655555888999999985 779999999999999998866544
Q ss_pred hhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCC--------
Q 005790 187 PSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINST-------- 258 (677)
Q Consensus 187 ~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~-------- 258 (677)
|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++..
T Consensus 72 --------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~ 142 (285)
T 1wdy_A 72 --------GATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE 142 (285)
T ss_dssp --------CCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHH
T ss_pred --------CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHH
Confidence 478999999999999999999999998 788999999999999999999999999999999887
Q ss_pred --CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhh
Q 005790 259 --DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI 336 (677)
Q Consensus 259 --d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~ 336 (677)
+..|.||||+|+..|+.+++++|++..+.+++..+..|.||||+|+..++. ....+++++|++.+ ++
T Consensus 143 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~------~~~~~i~~~Ll~~g-----~~ 211 (285)
T 1wdy_A 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD------SDVEAITHLLLDHG-----AD 211 (285)
T ss_dssp HTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT------TTHHHHHHHHHHTT-----CC
T ss_pred hhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc------chHHHHHHHHHHcC-----CC
Confidence 778999999999999999999999984488999999999999999987653 22367788887765 55
Q ss_pred hhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcc
Q 005790 337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDY 414 (677)
Q Consensus 337 in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~ 414 (677)
++.+|..|.||||+|+..+ +.++|++|++..|++++.+|..|+||||+|+..++.+ ++++|+++||+++.+|.
T Consensus 212 ~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~----i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 212 VNVRGERGKTPLILAVEKK-HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK----IAELLCKRGASTDCGDL 284 (285)
T ss_dssp SSCCCTTSCCHHHHHHHTT-CHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHHSSCSCCSSC
T ss_pred CCCcCCCCCcHHHHHHHcC-CHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHH----HHHHHHHcCCCCCcccc
Confidence 8899999999999999988 9999999999789999999999999999999999987 79999999999999874
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=9.7e-42 Score=362.14 Aligned_cols=301 Identities=20% Similarity=0.156 Sum_probs=246.9
Q ss_pred CCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCC
Q 005790 98 GKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGG 177 (677)
Q Consensus 98 g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~ 177 (677)
+++.+..+.++.++||.||..|+.+.|+.|+......++..+..|.||||+|| ..|+.+++++|+++|++++..+..
T Consensus 14 ~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~-- 90 (351)
T 3utm_A 14 SAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA-GYNRVRIVQLLLQHGADVHAKDKG-- 90 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT--
T ss_pred ceeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCCccCCC--
Confidence 34455566677888888888888888888887766677777888888888875 668888888888888887766544
Q ss_pred cchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCC
Q 005790 178 ELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257 (677)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~ 257 (677)
|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 91 -----------------g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 152 (351)
T 3utm_A 91 -----------------GLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL 152 (351)
T ss_dssp -----------------CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred -----------------CCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence 367888888888888888888888887 67788888888888888888888888888888888
Q ss_pred CCCCCCcHHHHH---------------------HHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhh
Q 005790 258 TDHQGNTPLHIA---------------------AYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLD 316 (677)
Q Consensus 258 ~d~~g~tpL~~A---------------------~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~ 316 (677)
.+..|.||+++| +..++.+.+..++.... .....+..|.||||+|+..++ .
T Consensus 153 ~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~t~L~~A~~~~~-------~ 224 (351)
T 3utm_A 153 VNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI-INFKQPQSHETALHCAVASLH-------P 224 (351)
T ss_dssp CCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCC-TTCCCTTTCCCHHHHHHHCCS-------T
T ss_pred ccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhc-ccccCCCCCCCHHHHHHHHhC-------c
Confidence 888888887664 56677777777777663 344567889999999998643 2
Q ss_pred HHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHH
Q 005790 317 RQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSD 396 (677)
Q Consensus 317 ~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~ 396 (677)
+..+++++|++.+ +++|.+|..|.||||+|+..+ +.++|++|++ .|+++|.+|..|+||||+|+..++.+
T Consensus 225 ~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~~~--- 294 (351)
T 3utm_A 225 KRKQVAELLLRKG-----ANVNEKNKDFMTPLHVAAERA-HNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQ--- 294 (351)
T ss_dssp THHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHH---
T ss_pred cHHHHHHHHHHcC-----CCcCCcCCCCCCHHHHHHHcC-CHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHH---
Confidence 5678888888766 458999999999999999988 9999999999 99999999999999999999999987
Q ss_pred HHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCC
Q 005790 397 ILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDV 452 (677)
Q Consensus 397 ~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~ 452 (677)
++++|+++|++++.+|..|+||+++|. .+++++|.+.+...
T Consensus 295 -~v~~Ll~~gad~~~~~~~g~tal~~a~--------------~~~~~~l~~~~~~~ 335 (351)
T 3utm_A 295 -TCRLLLSYGSDPSIISLQGFTAAQMGN--------------EAVQQILSESTPMR 335 (351)
T ss_dssp -HHHHHHHTTCCTTCCCTTSCCHHHHSC--------------HHHHHHHHHC----
T ss_pred -HHHHHHHcCCCCCCcCCCCCChhhhhh--------------HHHHHHHHhccccc
Confidence 799999999999999999999998862 45888888887654
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.6e-41 Score=344.22 Aligned_cols=266 Identities=21% Similarity=0.243 Sum_probs=240.0
Q ss_pred CCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCC
Q 005790 141 YGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTD 220 (677)
Q Consensus 141 ~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~ 220 (677)
.|.|||++|+ ..|+.+++++|+++|++++..... .|.||||+|+..|+.+++++|+++|++
T Consensus 4 ~g~~~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~------------------~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 64 (285)
T 1wdy_A 4 EDNHLLIKAV-QNEDVDLVQQLLEGGANVNFQEEE------------------GGWTPLHNAVQMSREDIVELLLRHGAD 64 (285)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT------------------TCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccchHHHHHH-HcCCHHHHHHHHHcCCCcccccCC------------------CCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4678999985 779999999999999998866322 246999999999999999999999999
Q ss_pred ccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccc--------
Q 005790 221 VLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVK-------- 292 (677)
Q Consensus 221 ~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~-------- 292 (677)
+ +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+ .+++..
T Consensus 65 ~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~ 142 (285)
T 1wdy_A 65 P-VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQE 142 (285)
T ss_dssp T-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCCCHHHH
T ss_pred C-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhC-CCcccccccHHHHH
Confidence 8 788999999999999999999999999999999999999999999999999999999999998 556665
Q ss_pred --CCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCc----HHHHHHHhh
Q 005790 293 --NTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVH----LELVQLLMS 366 (677)
Q Consensus 293 --~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~----~eiv~lLL~ 366 (677)
+..|.||||+|+. .++.+++++|++.. +.+++..|..|.||||+|+..+ + .+++++|++
T Consensus 143 ~~~~~g~t~L~~A~~----------~~~~~~v~~Ll~~~----~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~i~~~Ll~ 207 (285)
T 1wdy_A 143 RLRKGGATALMDAAE----------KGHVEVLKILLDEM----GADVNACDNMGRNALIHALLSS-DDSDVEAITHLLLD 207 (285)
T ss_dssp HTTCCCCCHHHHHHH----------HTCHHHHHHHHHTS----CCCTTCCCTTSCCHHHHHHHCS-CTTTHHHHHHHHHH
T ss_pred hhccCCCcHHHHHHH----------cCCHHHHHHHHHhc----CCCCCccCCCCCCHHHHHHHcc-ccchHHHHHHHHHH
Confidence 7889999999999 45667777777652 2458899999999999999988 7 899999999
Q ss_pred CCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHH-cCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHH
Q 005790 367 APSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLIS-AGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIF 445 (677)
Q Consensus 367 ~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~-~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~L 445 (677)
.|+++|.+|..|.||||+|+..++.+ ++++|++ .|++++.+|..|+||||+|+.... .+++++|
T Consensus 208 -~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~----------~~i~~~L 272 (285)
T 1wdy_A 208 -HGADVNVRGERGKTPLILAVEKKHLG----LVQRLLEQEHIEINDTDSDGKTALLLAVELKL----------KKIAELL 272 (285)
T ss_dssp -TTCCSSCCCTTSCCHHHHHHHTTCHH----HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC----------HHHHHHH
T ss_pred -cCCCCCCcCCCCCcHHHHHHHcCCHH----HHHHHHhccCCCccccCCCCCcHHHHHHHcCc----------HHHHHHH
Confidence 99999999999999999999999987 6889998 899999999999999999998533 8899999
Q ss_pred HHcCCCCCCCCC
Q 005790 446 LYTGIDVSSDGN 457 (677)
Q Consensus 446 L~~Gad~~~~~~ 457 (677)
+++||+++.+|.
T Consensus 273 l~~Ga~~~~~d~ 284 (285)
T 1wdy_A 273 CKRGASTDCGDL 284 (285)
T ss_dssp HHHSSCSCCSSC
T ss_pred HHcCCCCCcccc
Confidence 999999998773
No 8
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=8.8e-40 Score=347.01 Aligned_cols=320 Identities=21% Similarity=0.207 Sum_probs=242.3
Q ss_pred ccCcHHHHHHHcCCHHHHHHHHHh-cCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchh
Q 005790 25 WYASPIDWAAANGHYDLVRELLRI-DGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLI 103 (677)
Q Consensus 25 ~g~TpL~~Aa~~G~~diV~~LL~~-ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~ 103 (677)
++.|+||.||+.|+.++|+.||.. +++++. ....+.||||+|+..++.+++++|++ .|++++.
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~------------~d~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~ 86 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHA------------SDGRKSTPLHLAAGYNRVRIVQLLLQ----HGADVHA 86 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCC------------SSTTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTC
T ss_pred ccchhHHHHHHcCCHHHHHHHHHhcCCCccc------------CCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCc
Confidence 467999999999999999999975 666653 35568999999999999999999999 8999999
Q ss_pred hcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhh
Q 005790 104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHI 183 (677)
Q Consensus 104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~ 183 (677)
+|..|.||||+|+..|+.++|++|+++|+ .++..+..|.||||+|+ ..|+.+++++|+++|++++..+..+.......
T Consensus 87 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~-~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a 164 (351)
T 3utm_A 87 KDKGGLVPLHNACSYGHYEVTELLLKHGA-CVNAMDLWQFTPLHEAA-SKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164 (351)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred cCCCCCcHHHHHHHCCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCccccCCCCcchHHH
Confidence 99999999999999999999999999987 56778899999999995 77999999999999999998877665433322
Q ss_pred hcch--hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHh---CCHHHHHHHHhcCCCCCCC
Q 005790 184 EEIP--SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGR---GQVEVVKDLIASFDIINST 258 (677)
Q Consensus 184 ~~~~--~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~---g~~eivk~Ll~~ga~in~~ 258 (677)
.... ..........+++.++..++.+.++.++..+... ...+..|.||||+|+.. +..+++++|+++|++++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~ 243 (351)
T 3utm_A 165 PTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK 243 (351)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCC
T ss_pred hhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCc
Confidence 1111 1112223345677777778888887777776544 44667778888888887 4577888888888888888
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhh
Q 005790 259 DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIIN 338 (677)
Q Consensus 259 d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in 338 (677)
+..|.||||+|+..|+.+++++|++.| ++ +|
T Consensus 244 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~------------------------------------------------~n 274 (351)
T 3utm_A 244 NKDFMTPLHVAAERAHNDVMEVLHKHG-AK------------------------------------------------MN 274 (351)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTT-CC------------------------------------------------TT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCC-CC------------------------------------------------CC
Confidence 888888888888888888888888776 22 56
Q ss_pred ccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCc
Q 005790 339 AKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARR 418 (677)
Q Consensus 339 ~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T 418 (677)
.+|..|.||||+|+..+ +.++|++|++ .|+|++.+|..|+|||++|.. .++++|.+.+.. ....+.+
T Consensus 275 ~~d~~g~t~L~~A~~~~-~~~~v~~Ll~-~gad~~~~~~~g~tal~~a~~--------~~~~~l~~~~~~---~~~~~~~ 341 (351)
T 3utm_A 275 ALDSLGQTALHRAALAG-HLQTCRLLLS-YGSDPSIISLQGFTAAQMGNE--------AVQQILSESTPM---RTSDVDY 341 (351)
T ss_dssp CCCTTSCCHHHHHHHHT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHSCH--------HHHHHHHHC-------------
T ss_pred CcCCCCCCHHHHHHHcC-cHHHHHHHHH-cCCCCCCcCCCCCChhhhhhH--------HHHHHHHhcccc---ccCccee
Confidence 66778888888888877 8888888888 888888888888888888722 256666666543 3345567
Q ss_pred hHHHHHH
Q 005790 419 AIASHIK 425 (677)
Q Consensus 419 ~L~~al~ 425 (677)
++..|++
T Consensus 342 ~l~~A~~ 348 (351)
T 3utm_A 342 RLLEASK 348 (351)
T ss_dssp -------
T ss_pred ehhhhhc
Confidence 7777665
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.6e-41 Score=362.48 Aligned_cols=320 Identities=17% Similarity=0.109 Sum_probs=209.4
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcC
Q 005790 27 ASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAG 106 (677)
Q Consensus 27 ~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~ 106 (677)
..+|+.|+..|+.+.++.++++...+. | ..+++..+...+...++++++. ...+.
T Consensus 38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~g~~~~~~~~~~---------~~~~~ 92 (373)
T 2fo1_E 38 QHSLLEASYDGYIKRQRNELQHYSLYP---------------N-PQGYGNGNDFLGDFNHTNLQIP---------TEPEP 92 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCCccccchhhhhhhhcccc---------------C-ccccCCCCCccccccccccccc---------cCCCC
Confidence 377889999999999999998765431 1 1233455666677777777665 24577
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCCCCHHHHHHHhcCCHHHHHHHH--------hcCCCcccccccCC
Q 005790 107 YGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEG-EYGVTDIFYAAARSKNCDVFRLIY--------DFAVSPRFLTAKGG 177 (677)
Q Consensus 107 ~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~-~~g~tpL~~AA~~~g~~evv~lLl--------~~Gad~~~~~~~~~ 177 (677)
.|.||||+|+..++ +++++|+.. .++..+ ..|.||||+|| ..|+.+++++|+ ++|++++..+..
T Consensus 93 ~g~t~L~~Aa~~~~-~~~~~L~~~---~~n~~d~~~g~t~Lh~Aa-~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~-- 165 (373)
T 2fo1_E 93 ESPIKLHTEAAGSY-AITEPITRE---SVNIIDPRHNRTVLHWIA-SNSSAEKSEDLIVHEAKECIAAGADVNAMDCD-- 165 (373)
T ss_dssp -CCCHHHHHHHSSS-CCCSCCSTT---TTTTCCCSSCCCHHHHHH-CTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTT--
T ss_pred CCccHHHHHhcCCc-hHHHHhccc---cccccCCcCCCCHHHHHH-HCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCC--
Confidence 89999999999654 888888753 345556 78999999985 779988887776 678777765544
Q ss_pred cchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcC---CC
Q 005790 178 ELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASF---DI 254 (677)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~g---a~ 254 (677)
|.||||+|+..|+.++|++|+++|+++ +..+..|.||||+|+..|+.+++++|+++| ++
T Consensus 166 -----------------g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 227 (373)
T 2fo1_E 166 -----------------ENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD 227 (373)
T ss_dssp -----------------SCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT
T ss_pred -----------------CCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC
Confidence 367888888888888888888888887 667778888888888888888888888877 67
Q ss_pred CCCCCCCCCcHHHHHHHcC---CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHccccc
Q 005790 255 INSTDHQGNTPLHIAAYRG---QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIF 331 (677)
Q Consensus 255 in~~d~~g~tpL~~A~~~g---~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~ 331 (677)
++..|..|.||||+|+..+ +.+++++|++.| .+++..+.
T Consensus 228 ~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g-~~~~~~~~------------------------------------- 269 (373)
T 2fo1_E 228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKG-AKVDYDGA------------------------------------- 269 (373)
T ss_dssp TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHT-CCSSCCSG-------------------------------------
T ss_pred hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCC-CCcccccc-------------------------------------
Confidence 8888888888888888877 778888888877 33443211
Q ss_pred chhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCC
Q 005790 332 NMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGC 411 (677)
Q Consensus 332 ~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~ 411 (677)
...+..|..|.||||+|+..+ +.++|++|++..|+++|.+|..|.||||+|+..|+.+ ++++|+++|++++.
T Consensus 270 ---~~~~~~d~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~----iv~~Ll~~gad~~~ 341 (373)
T 2fo1_E 270 ---ARKDSEKYKGRTALHYAAQVS-NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE----VVMYLIQQGASVEA 341 (373)
T ss_dssp ---GGTSSSSCCCCCTHHHHHSSC-CHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCSSC
T ss_pred ---cccCcccccCCCHHHHHHHhC-CHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCccC
Confidence 113456788999999999988 9999999998445999999999999999999999877 68888999999999
Q ss_pred CcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCC
Q 005790 412 QDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDV 452 (677)
Q Consensus 412 ~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~ 452 (677)
+|..|+|||++|+.... .+++++|+++|++.
T Consensus 342 ~d~~g~t~l~~A~~~g~----------~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 342 VDATDHTARQLAQANNH----------HNIVDIFDRCRPER 372 (373)
T ss_dssp CCSSSCCHHHHHHHTTC----------HHHHHHHHTTC---
T ss_pred CCCCCCCHHHHHHHcCC----------HHHHHHHHhcCccc
Confidence 99999999999888533 88999999998863
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.4e-40 Score=340.12 Aligned_cols=260 Identities=20% Similarity=0.183 Sum_probs=176.6
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHHcCC----------CccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccc
Q 005790 105 AGYGGWLLYTAASAGDLGFVKQLLDKNP----------LLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTA 174 (677)
Q Consensus 105 d~~G~t~L~~Aa~~g~~eivk~LL~~g~----------~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~ 174 (677)
..+|.|+||+|+..|+.+.+..++..++ ...+..+..|+||||+|| ..|+.+++++|+++|++++..+.
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa-~~g~~~~v~~Ll~~g~~~~~~~~ 90 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAA-IHGHQLSLRNLISQGWAVNIITA 90 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHH-HTTCHHHHHHHHHTTCCSCEECT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHH-HcCCHHHHHHHHHCCCCCCCcCC
Confidence 3468899999999999877777766542 234557788889998885 66889999999998888876654
Q ss_pred cCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 005790 175 KGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254 (677)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~ 254 (677)
. |.||||+|+..|+.++|++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++
T Consensus 91 ~-------------------g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 150 (285)
T 3d9h_A 91 D-------------------HVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 150 (285)
T ss_dssp T-------------------CCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred C-------------------CCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC
Confidence 4 368899999999999999999998888 77888889999999999999999999998888
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchh
Q 005790 255 INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNME 334 (677)
Q Consensus 255 in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~ 334 (677)
++..+ .|.||||+|+..|+.+++++|++.+. +
T Consensus 151 ~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~-~---------------------------------------------- 182 (285)
T 3d9h_A 151 VQPES-DLASPIHEAARRGHVECVNSLIAYGG-N---------------------------------------------- 182 (285)
T ss_dssp SSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTC-C----------------------------------------------
T ss_pred CCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCC-C----------------------------------------------
Confidence 87644 48899999999999999988888773 3
Q ss_pred hhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcc
Q 005790 335 DIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDY 414 (677)
Q Consensus 335 ~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~ 414 (677)
++.+|..|.||||+|+..+ +.++|++|++ .|+++|. |..|.||||+|+..++.+ ++++|+++|++++.+|.
T Consensus 183 --~~~~d~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~~~~----~v~~Ll~~gad~~~~d~ 253 (285)
T 3d9h_A 183 --IDHKISHLGTPLYLACENQ-QRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTASEE----LACLLMDFGADTQAKNA 253 (285)
T ss_dssp --TTCCBTTTBCHHHHHHHTT-CHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCT
T ss_pred --CCCcCCCCCCHHHHHHHcC-cHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCC
Confidence 4445667777777777766 7777777777 7777774 677777777777777765 57777777777777777
Q ss_pred cCCchHHHHHHHhCCCCCCCCccchhhHHHHHHc-CCCCCC
Q 005790 415 SARRAIASHIKMLGNGSSPGTSFRISDTEIFLYT-GIDVSS 454 (677)
Q Consensus 415 ~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~-Gad~~~ 454 (677)
.|+|||++|+.. .+++++|+++ |+++..
T Consensus 254 ~g~t~l~~A~~~------------~~~~~~Ll~~~~a~l~~ 282 (285)
T 3d9h_A 254 EGKRPVELVPPE------------SPLAQLFLEREGASLPK 282 (285)
T ss_dssp TSCCGGGGSCTT------------SHHHHHHHHHC------
T ss_pred CCCCHHHHhcCc------------cHHHHHHHHhhccCCCC
Confidence 777777776521 4577777776 776643
No 11
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=335.78 Aligned_cols=268 Identities=19% Similarity=0.174 Sum_probs=201.1
Q ss_pred ccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhh
Q 005790 25 WYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIR 104 (677)
Q Consensus 25 ~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~ 104 (677)
+|.|+||+||..|+.+.+..++..+..-... . .+ -....+.+
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~----------------~----------------~l------~~~~~~~~ 55 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPG----------------I----------------RL------LSNPLMGD 55 (285)
T ss_dssp ----------------------------CCS----------------E----------------EC------CCCTTCSS
T ss_pred HHHHHHHHHhhcCCCCCcccCCCCccccccc----------------h----------------hh------hhCcccCC
Confidence 4789999999999988888888765431000 0 00 01124557
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhh
Q 005790 105 AGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIE 184 (677)
Q Consensus 105 d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~ 184 (677)
|..|.||||+||..|+.++|++|++.++ +++..+..|.||||+|| ..|+.+++++|+++|++++..+..
T Consensus 56 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~ga~~~~~~~~--------- 124 (285)
T 3d9h_A 56 AVSDWSPMHEAAIHGHQLSLRNLISQGW-AVNIITADHVSPLHEAC-LGGHLSCVKILLKHGAQVNGVTAD--------- 124 (285)
T ss_dssp SCCSCCHHHHHHHTTCHHHHHHHHHTTC-CSCEECTTCCCHHHHHH-HTTCHHHHHHHHHTTCCSSCCCTT---------
T ss_pred CccCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHH-HCCcHHHHHHHHHCCCCCCCCCCC---------
Confidence 8899999999999999999999999986 57778899999999995 779999999999999998876554
Q ss_pred cchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCc
Q 005790 185 EIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNT 264 (677)
Q Consensus 185 ~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~t 264 (677)
|.||||+|+..|+.+++++|+++|+++ + .+..|.||||+|+..|+.+++++|+++|++++..|..|.|
T Consensus 125 ----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t 192 (285)
T 3d9h_A 125 ----------WHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGT 192 (285)
T ss_dssp ----------CCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBC
T ss_pred ----------CCCHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Confidence 378999999999999999999999998 4 3445999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCC
Q 005790 265 PLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDG 344 (677)
Q Consensus 265 pL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G 344 (677)
|||+|+..|+.+++++|++.|.. ++ .+..|
T Consensus 193 ~L~~A~~~~~~~~v~~Ll~~ga~-------------------------------------------------~~-~~~~g 222 (285)
T 3d9h_A 193 PLYLACENQQRACVKKLLESGAD-------------------------------------------------VN-QGKGQ 222 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC-------------------------------------------------TT-CCBTT
T ss_pred HHHHHHHcCcHHHHHHHHHCCCC-------------------------------------------------CC-CCCCC
Confidence 99999999999999999998832 23 25678
Q ss_pred chHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHc-CCCCCC
Q 005790 345 RTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISA-GGIFGC 411 (677)
Q Consensus 345 ~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~-Gadin~ 411 (677)
.||||+|+..+ +.++|++|++ .|+|++.+|..|+||||+|+.. .+ ++++|+++ |+++..
T Consensus 223 ~t~L~~A~~~~-~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~--~~----~~~~Ll~~~~a~l~~ 282 (285)
T 3d9h_A 223 DSPLHAVVRTA-SEELACLLMD-FGADTQAKNAEGKRPVELVPPE--SP----LAQLFLEREGASLPK 282 (285)
T ss_dssp BCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTSCCGGGGSCTT--SH----HHHHHHHHC------
T ss_pred CCHHHHHHHcC-CHHHHHHHHH-CCCCCCCcCCCCCCHHHHhcCc--cH----HHHHHHHhhccCCCC
Confidence 89999999988 9999999999 8999999999999999999943 33 68888887 777654
No 12
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.3e-39 Score=331.38 Aligned_cols=252 Identities=21% Similarity=0.129 Sum_probs=188.1
Q ss_pred cccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchh
Q 005790 24 WWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLI 103 (677)
Q Consensus 24 ~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~ 103 (677)
|.|.||||+||..|+.++|++|+++|+++ +.
T Consensus 1 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-------------------------------------------------~~ 31 (261)
T 2xai_A 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAV-------------------------------------------------NI 31 (261)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHHTTCCS-------------------------------------------------SC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------------------------------------------------CC
Confidence 34779999999999999999999876654 44
Q ss_pred hcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhh
Q 005790 104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHI 183 (677)
Q Consensus 104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~ 183 (677)
+|..|.||||+|+..|+.++|++|+++|+ +++..+..|.||||+|+ ..|+.+++++|+++|++++...
T Consensus 32 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~---------- 99 (261)
T 2xai_A 32 ITADHVSPLHEACLGGHLSCVKILLKHGA-QVNGVTADWHTPLFNAC-VSGSWDCVNLLLQHGASVQPES---------- 99 (261)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCCSSCSC----------
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHCCCCCCCCC----------
Confidence 56678888888888888888888888876 56677888888888885 6688888888888888776321
Q ss_pred hcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC
Q 005790 184 EEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGN 263 (677)
Q Consensus 184 ~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~ 263 (677)
.|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++. +..|.
T Consensus 100 ----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~ 167 (261)
T 2xai_A 100 ----------DLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQD 167 (261)
T ss_dssp ----------TTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTB
T ss_pred ----------CCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCC
Confidence 1468888888888888888888888888 77888888888888888888888888888888885 77888
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHccccc---chhhhhhcc
Q 005790 264 TPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIF---NMEDIINAK 340 (677)
Q Consensus 264 tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~---~~~~~in~~ 340 (677)
||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+..+ +++++|++.+.. ....+++.+
T Consensus 168 t~Lh~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpl~~A~~~~------------~~~~~ll~~~~~~~l~~~~~~~~r 234 (261)
T 2xai_A 168 SPLHAVARTASEELACLLMDFG-ADTQAKNAEGKRPVELVPPES------------PLAQLFLEREGPPSLMQLCRLRIR 234 (261)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGSCTTC------------THHHHHHHC-CCCCHHHHHHHHHH
T ss_pred ChHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCChhhhccccc------------cHHHHHHhccCCccHHHHHHHHHH
Confidence 8888888888888888888887 567777777777777776432 234444443211 111235556
Q ss_pred CCCCchHHHHHHhCCCcHHHHH
Q 005790 341 NNDGRTALHMAITGNVHLELVQ 362 (677)
Q Consensus 341 d~~G~TpLh~A~~~~~~~eiv~ 362 (677)
|..|.|+||.|.... ..+.++
T Consensus 235 ~~~g~t~l~~~~~~~-~p~~l~ 255 (261)
T 2xai_A 235 KCFGIQQHHKITKLV-LPEDLK 255 (261)
T ss_dssp TTSCTTCGGGGGGSS-SCHHHH
T ss_pred HHhchhccccCcccC-CcHHHH
Confidence 666666666666655 333333
No 13
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.3e-40 Score=354.84 Aligned_cols=284 Identities=16% Similarity=0.136 Sum_probs=220.5
Q ss_pred ccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhh
Q 005790 25 WYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIR 104 (677)
Q Consensus 25 ~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~ 104 (677)
|-++++.-|...|+++++++++.... ...+.++||.|+.++. +++++|+. .+++..
T Consensus 65 ~~~~~~~~~~~~g~~~~~~~~~~~~~-----------------~~~g~t~L~~Aa~~~~-~~~~~L~~------~~~n~~ 120 (373)
T 2fo1_E 65 NPQGYGNGNDFLGDFNHTNLQIPTEP-----------------EPESPIKLHTEAAGSY-AITEPITR------ESVNII 120 (373)
T ss_dssp ----------------------------------------------CCCHHHHHHHSSS-CCCSCCST------TTTTTC
T ss_pred CccccCCCCCccccccccccccccCC-----------------CCCCccHHHHHhcCCc-hHHHHhcc------cccccc
Confidence 34567788899999999999987543 3468999999999765 55555543 467778
Q ss_pred c-CCCChHHHHHHHcCCHHHHHHHH--------HcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCccccccc
Q 005790 105 A-GYGGWLLYTAASAGDLGFVKQLL--------DKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAK 175 (677)
Q Consensus 105 d-~~G~t~L~~Aa~~g~~eivk~LL--------~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~ 175 (677)
| ..|.||||+||..|+.++|++|+ +.|+ +++..|..|.||||+|| ..|+.++|++|+++|++++..+..
T Consensus 121 d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga-~vn~~d~~g~TpL~~A~-~~g~~~iv~~Ll~~ga~~~~~~~~ 198 (373)
T 2fo1_E 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA-DVNAMDCDENTPLMLAV-LARRRRLVAYLMKAGADPTIYNKS 198 (373)
T ss_dssp CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCC-CTTCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCCSCCCCTT
T ss_pred CCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCC-CCcCCCCCCCCHHHHHH-HcChHHHHHHHHHCCCCCcccCCC
Confidence 8 78999999999999999888887 6675 67788999999999986 669999999999999999876554
Q ss_pred CCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcC---CCccccCCCCCCcHHHHHHHhC---CHHHHHHHH
Q 005790 176 GGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENC---TDVLTYRDKQGSTILHAAAGRG---QVEVVKDLI 249 (677)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~g---a~~~~~~d~~g~TpL~~A~~~g---~~eivk~Ll 249 (677)
|.||||+|+..|+.+++++|++++ +++ +..+..|.||||+|+..+ +.+++++|+
T Consensus 199 -------------------g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll 258 (373)
T 2fo1_E 199 -------------------ERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLV 258 (373)
T ss_dssp -------------------CCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHH
T ss_pred -------------------CCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHH
Confidence 378999999999999999999998 677 778999999999999998 899999999
Q ss_pred hcCCCCCC--------CCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHH
Q 005790 250 ASFDIINS--------TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKL 321 (677)
Q Consensus 250 ~~ga~in~--------~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~ei 321 (677)
++|++++. .|..|.||||+|+..|+.++|++|++.++.+
T Consensus 259 ~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--------------------------------- 305 (373)
T 2fo1_E 259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN--------------------------------- 305 (373)
T ss_dssp HHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC---------------------------------
T ss_pred HCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC---------------------------------
Confidence 99999886 5678999999999999999999999887443
Q ss_pred HHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHH
Q 005790 322 MKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401 (677)
Q Consensus 322 v~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~ 401 (677)
++.+|..|.||||+|+..+ +.++|++|++ .|++++.+|..|.||||+|+..++.+ ++++
T Consensus 306 ---------------~n~~d~~g~TpL~~A~~~g-~~~iv~~Ll~-~gad~~~~d~~g~t~l~~A~~~g~~~----iv~~ 364 (373)
T 2fo1_E 306 ---------------KDKQDEDGKTPIMLAAQEG-RIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHN----IVDI 364 (373)
T ss_dssp ---------------TTCCCTTCCCHHHHHHHHT-CHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHH----HHHH
T ss_pred ---------------ccCcCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCccCCCCCCCCHHHHHHHcCCHH----HHHH
Confidence 5556778888888888888 9999999999 89999999999999999999999877 6888
Q ss_pred HHHcCCC
Q 005790 402 LISAGGI 408 (677)
Q Consensus 402 Ll~~Gad 408 (677)
|+++|++
T Consensus 365 Ll~~~a~ 371 (373)
T 2fo1_E 365 FDRCRPE 371 (373)
T ss_dssp HHTTC--
T ss_pred HHhcCcc
Confidence 8888875
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=324.88 Aligned_cols=238 Identities=20% Similarity=0.199 Sum_probs=202.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcc
Q 005790 107 YGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEI 186 (677)
Q Consensus 107 ~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~ 186 (677)
.|.||||+||..|+.++|++|++.|+ +++..+..|.||||+|| ..|+.+++++|+++|++++..+..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~----------- 68 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGW-AVNIITADHVSPLHEAC-LGGHLSCVKILLKHGAQVNGVTAD----------- 68 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTC-CSSCCCTTCCCHHHHHH-HHTCHHHHHHHHHTTCCTTCCCTT-----------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCCCCHHHHHH-HcCCHHHHHHHHHCCCCCCCCCCC-----------
Confidence 47899999999999999999999886 56778888999999985 669999999999999988866544
Q ss_pred hhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 005790 187 PSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPL 266 (677)
Q Consensus 187 ~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL 266 (677)
|.||||+|+..|+.+++++|+++|+++ + .+..|.||||+|+..|+.+++++|+++|++++..|..|.|||
T Consensus 69 --------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 138 (261)
T 2xai_A 69 --------WHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL 138 (261)
T ss_dssp --------SCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHH
T ss_pred --------CCCHHHHHHHcCCHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHH
Confidence 368999999999999999999999987 3 355688999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCch
Q 005790 267 HIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRT 346 (677)
Q Consensus 267 ~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~T 346 (677)
|+|+..|+.+++++|++.|. + +|. +..|.|
T Consensus 139 ~~A~~~~~~~~v~~Ll~~g~-~------------------------------------------------~~~-~~~g~t 168 (261)
T 2xai_A 139 YLACENQQRACVKKLLESGA-D------------------------------------------------VNQ-GKGQDS 168 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHTC-C------------------------------------------------TTC-CBTTBC
T ss_pred HHHHHhCCHHHHHHHHHcCC-C------------------------------------------------CCC-CCCCCC
Confidence 99999999999999998883 2 232 567889
Q ss_pred HHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCC--------CCCCcccCCc
Q 005790 347 ALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGI--------FGCQDYSARR 418 (677)
Q Consensus 347 pLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gad--------in~~d~~G~T 418 (677)
|||+|+..+ +.++|++|++ .|+|++.+|..|+||||+|+..+. ++++|+++++. ++.+|..|+|
T Consensus 169 ~Lh~A~~~~-~~~~v~~Ll~-~gad~~~~d~~g~tpl~~A~~~~~------~~~~ll~~~~~~~l~~~~~~~~r~~~g~t 240 (261)
T 2xai_A 169 PLHAVARTA-SEELACLLMD-FGADTQAKNAEGKRPVELVPPESP------LAQLFLEREGPPSLMQLCRLRIRKCFGIQ 240 (261)
T ss_dssp HHHHHHHHT-CHHHHHHHHH-TTCCTTCCCTTSCCGGGGSCTTCT------HHHHHHHC-CCCCHHHHHHHHHHTTSCTT
T ss_pred hHHHHHHcC-CHHHHHHHHH-cCCCCCCcCCCCCChhhhcccccc------HHHHHHhccCCccHHHHHHHHHHHHhchh
Confidence 999999988 9999999999 899999999999999999997664 68888888875 4467889999
Q ss_pred hHHHHHH
Q 005790 419 AIASHIK 425 (677)
Q Consensus 419 ~L~~al~ 425 (677)
++|.+.+
T Consensus 241 ~l~~~~~ 247 (261)
T 2xai_A 241 QHHKITK 247 (261)
T ss_dssp CGGGGGG
T ss_pred ccccCcc
Confidence 9987665
No 15
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.5e-39 Score=348.85 Aligned_cols=257 Identities=16% Similarity=0.163 Sum_probs=214.5
Q ss_pred CCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccC
Q 005790 97 NGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKG 176 (677)
Q Consensus 97 ~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~ 176 (677)
.+.+++..|..|.||||+||..|+.++|++|++.|+ +++..+..|.||||+|| ..|+.++|++|+++|++++..
T Consensus 9 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~---- 82 (364)
T 3ljn_A 9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGV-SPTIQNRFGCTALHLAC-KFGCVDTAKYLASVGEVHSLW---- 82 (364)
T ss_dssp -------CCHHHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHH-HHCCHHHHHHHHHHCCCCCCB----
T ss_pred cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCcHHHHHH-HcCCHHHHHHHHHCCCCcccc----
Confidence 456677788899999999999999999999999986 56778899999999986 669999999999999966532
Q ss_pred CcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhc----CCCcccc-----------------CCCCCCcHHHH
Q 005790 177 GELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLEN----CTDVLTY-----------------RDKQGSTILHA 235 (677)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~----ga~~~~~-----------------~d~~g~TpL~~ 235 (677)
.|.||||+|+..|+.++|++|+++ |+++ +. .+..|.||||+
T Consensus 83 -----------------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 144 (364)
T 3ljn_A 83 -----------------HGQKPIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHW 144 (364)
T ss_dssp -----------------TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHH
T ss_pred -----------------CCCCHHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHH
Confidence 146899999999999999999998 7766 44 77899999999
Q ss_pred HHHhC--CHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCC----ccccCCCCCchhhhhhhcCch
Q 005790 236 AAGRG--QVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSM----ISVKNTSGETFLHSAVSGFQT 309 (677)
Q Consensus 236 A~~~g--~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~----~~~~~~~g~tpLh~A~~~~~~ 309 (677)
|+..| +.++|++|+++|++++..|..|.||||+|+..|+.+++++|++.++.. ++..+..|.||||+|+..
T Consensus 145 A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~--- 221 (364)
T 3ljn_A 145 CVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILI--- 221 (364)
T ss_dssp HHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTT---
T ss_pred HHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHc---
Confidence 99999 999999999999999999999999999999999999999999998432 788888899999999884
Q ss_pred HHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccc------------cCC
Q 005790 310 YAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV------------RDN 377 (677)
Q Consensus 310 ~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~------------~d~ 377 (677)
++.+++++|++.+ ++++.+|..|.||||+|+..+ +.++|++|++ .|++++. .+.
T Consensus 222 -------g~~~~v~~Ll~~g-----ad~~~~d~~g~tpL~~A~~~g-~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~ 287 (364)
T 3ljn_A 222 -------NWEDVAMRFVEMG-----IDVNMEDNEHTVPLYLSVRAA-MVLLTKELLQ-KTDVFLIQACPYHNGTTVLPDR 287 (364)
T ss_dssp -------TCHHHHHHHHTTT-----CCTTCCCTTSCCHHHHHHHTC-CHHHHHHHHH-HSCHHHHHTCTTBSSSSBCGGG
T ss_pred -------CCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHHHhC-hHHHHHHHHH-cCCchhhhcCcccCcccccccc
Confidence 4556666776654 568888889999999999888 8999999998 7877644 355
Q ss_pred CCCcHHHHHhhCCCCch
Q 005790 378 DGMTTLDLLKQRPQSAS 394 (677)
Q Consensus 378 ~G~TpL~~A~~~~~~~~ 394 (677)
.++|||++|+..++.+.
T Consensus 288 ~~~~~l~~aa~~~~~~~ 304 (364)
T 3ljn_A 288 VVWLDFVPAAADPSKQE 304 (364)
T ss_dssp CCCCTTSCSSCCHHHHH
T ss_pred cccccchhhhhccCHHH
Confidence 77888888888887653
No 16
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.3e-38 Score=322.23 Aligned_cols=232 Identities=21% Similarity=0.231 Sum_probs=151.8
Q ss_pred CCchhhcCCCChHHHHHHHcC-------------CHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhc
Q 005790 99 KNSLIRAGYGGWLLYTAASAG-------------DLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDF 165 (677)
Q Consensus 99 ~~~~~~d~~G~t~L~~Aa~~g-------------~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~ 165 (677)
.|+|.+|..|.||||+|+..| +.++|++|++.|+......+..|.||||+|| ..|+.+++++|+++
T Consensus 1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~ 79 (253)
T 1yyh_A 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAA-RYSRSDAAKRLLEA 79 (253)
T ss_dssp ---------------------------------------------------CCCTTSCCHHHHHH-HTTCHHHHHHHHHT
T ss_pred CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHH-HcCCHHHHHHHHHc
Confidence 367889999999999999987 7788888888777666666777888888774 56788888888888
Q ss_pred CCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHH
Q 005790 166 AVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVV 245 (677)
Q Consensus 166 Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eiv 245 (677)
|++++..+.. |.||||+|+..|+.+++++|+++|+...+..+..|.||||+|+..|+.+++
T Consensus 80 g~~~~~~~~~-------------------g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v 140 (253)
T 1yyh_A 80 SADANIQDNM-------------------GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 140 (253)
T ss_dssp TCCTTCCCTT-------------------SCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHH
T ss_pred CCCCCCCCCC-------------------CCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHH
Confidence 8777665433 357888888888888888888877733366777788888888888888888
Q ss_pred HHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHH
Q 005790 246 KDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQL 325 (677)
Q Consensus 246 k~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~L 325 (677)
++|+++|++++..|..|.||||+|+..|+.+++++|++.|+ +
T Consensus 141 ~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~------------------------------------- 182 (253)
T 1yyh_A 141 EDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA-N------------------------------------- 182 (253)
T ss_dssp HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC-C-------------------------------------
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-C-------------------------------------
Confidence 88888888888777778888888888888888888877762 2
Q ss_pred HcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHc
Q 005790 326 ASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISA 405 (677)
Q Consensus 326 l~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~ 405 (677)
++.+|..|.||||+|+..+ +.+++++|++ .|++++.+|..|.|||++|+..|+.+ ++++|...
T Consensus 183 -----------~~~~~~~g~tpL~~A~~~~-~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g~~~----i~~~l~~~ 245 (253)
T 1yyh_A 183 -----------KDMQNNREETPLFLAAREG-SYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHD----IVRLLDLE 245 (253)
T ss_dssp -----------TTCCCTTSCCHHHHHHHHT-CHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHC-
T ss_pred -----------CCCcCCCCCCHHHHHHHCC-CHHHHHHHHH-cCCCccccccCCCCHHHHHHHcCCHH----HHHHHHHH
Confidence 5566788899999999888 9999999999 89999999999999999999999988 46665543
No 17
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.8e-37 Score=309.08 Aligned_cols=234 Identities=25% Similarity=0.269 Sum_probs=205.2
Q ss_pred CCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCc
Q 005790 99 KNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGE 178 (677)
Q Consensus 99 ~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~ 178 (677)
.+++..|..|.||||+||..|+.++|++|+++|+ +++..+..|.||||+|+ ..|+.+++++|+++|++++..+..
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~--- 76 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGA-NIDTCSEDQRTPLMEAA-ENNHLEAVKYLIKAGALVDPKDAE--- 76 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTCCCHHHHHH-HTTCHHHHHHHHTTTCCCCCCCTT---
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCC-CcCccCCCCCCHHHHHH-HhCCHHHHHHHHhCCCCCCCCCCC---
Confidence 4677788899999999999999999999999986 56677888999999985 679999999999999988765543
Q ss_pred chhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcC-CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCC
Q 005790 179 LEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENC-TDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINS 257 (677)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~g-a~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~ 257 (677)
|.||||+|+..|+.+++++|++.| .++ +..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 77 ----------------g~t~L~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~ 139 (237)
T 3b7b_A 77 ----------------GSTCLHLAAKKGHYEVVQYLLSNGQMDV-NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139 (237)
T ss_dssp ----------------SCCHHHHHHHTTCHHHHHHHHTTTCCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred ----------------CCcHHHHHHHcCCHHHHHHHHhCCCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence 368999999999999999999998 455 77888999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhh
Q 005790 258 TDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDII 337 (677)
Q Consensus 258 ~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~i 337 (677)
.+..|.||||+|+..|+.+++++|++.|.. +
T Consensus 140 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------------------------------------------------~ 170 (237)
T 3b7b_A 140 RDNEENICLHWAAFSGCVDIAEILLAAKCD-------------------------------------------------L 170 (237)
T ss_dssp CCTTSCCHHHHHHHHCCHHHHHHHHTTTCC-------------------------------------------------T
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-------------------------------------------------C
Confidence 999999999999999999999999987732 5
Q ss_pred hccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHc
Q 005790 338 NAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISA 405 (677)
Q Consensus 338 n~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~ 405 (677)
+.+|..|.||||+|+..+ +.+++++|++ .|+|++.+|..|.||||+|+..++...+..+++.|.+.
T Consensus 171 ~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 171 HAVNIHGDSPLHIAAREN-RYDCVVLFLS-RDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp TCCCTTCCCHHHHHHHTT-CHHHHHHHHT-TTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred CCcCCCCCCHHHHHHHhC-CHhHHHHHHH-cCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 566788999999999988 9999999999 99999999999999999999999988888888887653
No 18
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.3e-38 Score=339.64 Aligned_cols=283 Identities=20% Similarity=0.131 Sum_probs=227.3
Q ss_pred cccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchh
Q 005790 24 WWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLI 103 (677)
Q Consensus 24 ~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~ 103 (677)
..|.||||+||..|+.++|++||++|+++ +.
T Consensus 18 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-------------------------------------------------~~ 48 (364)
T 3ljn_A 18 DENMEKIHVAARKGQTDEVRRLIETGVSP-------------------------------------------------TI 48 (364)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTCCT-------------------------------------------------TC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------------------------------------------------cc
Confidence 34779999999999999999999876654 45
Q ss_pred hcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhc----CCCcccccccCCcc
Q 005790 104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDF----AVSPRFLTAKGGEL 179 (677)
Q Consensus 104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~----Gad~~~~~~~~~~~ 179 (677)
+|..|.||||+||..|+.++|++|++.++.. .+..|.||||+|+ ..|+.+++++|+++ |++++.........
T Consensus 49 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 124 (364)
T 3ljn_A 49 QNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAV-MANKTDLVVALVEGAKERGQMPESLLNECDER 124 (364)
T ss_dssp CCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHHH-HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHHH-HcCCHHHHHHHHHhccccCCCHHHHHhhcchH
Confidence 6778999999999999999999999999832 3357899999985 77999999999999 88777532221110
Q ss_pred hhhhhcchhhhhhhccchHHHHHHhcC--CHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC---
Q 005790 180 EEHIEEIPSVYKWEMMNRAVHAAARGG--NLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI--- 254 (677)
Q Consensus 180 ~~~~~~~~~~~~~~~~~t~Lh~A~~~g--~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~--- 254 (677)
..........+..|.||||+|+..| +.++|++|+++|+++ +..|..|.||||+|+..|+.++|++|+++|++
T Consensus 125 --~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 201 (364)
T 3ljn_A 125 --EVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSS 201 (364)
T ss_dssp --CEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSS
T ss_pred --hhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhccccccc
Confidence 0111222335556789999999999 999999999999999 88999999999999999999999999999999
Q ss_pred --CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccc
Q 005790 255 --INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFN 332 (677)
Q Consensus 255 --in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~ 332 (677)
++..|..|.||||+|+..|+.+++++|+++| ++++..|..|.||||+|+..+ +.+++++|++.+...
T Consensus 202 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~g----------~~~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 202 LRLDYANKQGNSHLHWAILINWEDVAMRFVEMG-IDVNMEDNEHTVPLYLSVRAA----------MVLLTKELLQKTDVF 270 (364)
T ss_dssp CCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTC----------CHHHHHHHHHHSCHH
T ss_pred ccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHhC----------hHHHHHHHHHcCCch
Confidence 9999999999999999999999999999998 779999999999999999955 455566666554110
Q ss_pred -------hhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCcccc
Q 005790 333 -------MEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVR 375 (677)
Q Consensus 333 -------~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~ 375 (677)
........+..+.|||++|+..+ +.+.|..||. .+++....
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~-~~~~v~~ll~-~~~~~~~~ 318 (364)
T 3ljn_A 271 LIQACPYHNGTTVLPDRVVWLDFVPAAADP-SKQEVLQLLQ-EKLDEVVR 318 (364)
T ss_dssp HHHTCTTBSSSSBCGGGCCCCTTSCSSCCH-HHHHHHHHHH-HHHHHHHT
T ss_pred hhhcCcccCcccccccccccccchhhhhcc-CHHHHHHHHH-HHHHHHhh
Confidence 00011225667899999999988 7777777777 56554443
No 19
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=7.3e-37 Score=305.79 Aligned_cols=228 Identities=21% Similarity=0.267 Sum_probs=204.6
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790 106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE 185 (677)
Q Consensus 106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~ 185 (677)
..+.+|||.|+..|+.++|++|++.++..++..+..|.||||+|+ ..|+.+++++|+++|++++..+..
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~---------- 72 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWAC-SAGHTEIVEFLLQLGVPVNDKDDA---------- 72 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCCSCCCCTT----------
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHH-HcCcHHHHHHHHHhCCCCCCcCCC----------
Confidence 457899999999999999999999988778888999999999985 669999999999999988866544
Q ss_pred chhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 005790 186 IPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP 265 (677)
Q Consensus 186 ~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tp 265 (677)
|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 73 ---------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 142 (231)
T 3aji_A 73 ---------GWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATA 142 (231)
T ss_dssp ---------SCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ---------CCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcH
Confidence 478999999999999999999999998 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCc
Q 005790 266 LHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGR 345 (677)
Q Consensus 266 L~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~ 345 (677)
||+|+..|+.+++++|++.+. + ++.+|..|.
T Consensus 143 L~~A~~~~~~~~v~~Ll~~g~-~------------------------------------------------~~~~~~~g~ 173 (231)
T 3aji_A 143 MHRAAAKGNLKMVHILLFYKA-S------------------------------------------------TNIQDTEGN 173 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHTTC-C------------------------------------------------SCCCCTTSC
T ss_pred HHHHHHcCCHHHHHHHHhcCC-C------------------------------------------------ccccCCCCC
Confidence 999999999999999998873 2 455677889
Q ss_pred hHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCC
Q 005790 346 TALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIF 409 (677)
Q Consensus 346 TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadi 409 (677)
||||+|+..+ +.+++++|++ .|++++.+|..|.|||++|+..++.+ ++++|+++|+++
T Consensus 174 t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~----i~~lL~~~~a~i 231 (231)
T 3aji_A 174 TPLHLACDEE-RVEEAKFLVT-QGASIYIENKEEKTPLQVAKGGLGLI----LKRLAEGEEASM 231 (231)
T ss_dssp CHHHHHHHTT-CHHHHHHHHH-TTCCSCCCCTTSCCHHHHSCHHHHHH----HHHHHHHHHHCC
T ss_pred CHHHHHHHCC-CHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhhHHHH----HHHHHccccccC
Confidence 9999999988 9999999999 89999999999999999998877765 688888887764
No 20
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.2e-37 Score=317.41 Aligned_cols=253 Identities=21% Similarity=0.213 Sum_probs=191.7
Q ss_pred hhhccchHHHHHHhcCCHHHHHHHHhcCCCc--cccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 005790 191 KWEMMNRAVHAAARGGNLKILKELLENCTDV--LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHI 268 (677)
Q Consensus 191 ~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~--~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~ 268 (677)
.+..|.||||+|+..|+.++|++|+++|++. .+..+..|+||||+|+..|+.++|++|+++|++++..+..|.||||+
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~ 84 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL 84 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 3455789999999999999999999999982 37889999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHhCCCCc------------cccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhh
Q 005790 269 AAYRGQPAVVEALILASPSMI------------SVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI 336 (677)
Q Consensus 269 A~~~g~~~iv~~LL~~g~~~~------------~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~ 336 (677)
|+..|+.+++++|++.++... ......+.++++.++.... .......+ ...+.+
T Consensus 85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-----~~~~~~ 150 (282)
T 1oy3_D 85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP---------ENEEEPRD-----EDWRLQ 150 (282)
T ss_dssp HTTTTCHHHHHHHSSSCCSSCCCC--------------------------------------------C-----CCGGGG
T ss_pred HHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcccccc---------chhhhhhh-----hhhhhc
Confidence 999999999999999884321 1122334455555554211 11112222 344567
Q ss_pred hhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCC-CCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCccc
Q 005790 337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDND-GMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYS 415 (677)
Q Consensus 337 in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~-G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~ 415 (677)
++.++..|.||||+|+..+ +.++|++|++ .|++++.++.. |+||||+|+..++.+ ++++|+++|++++.+|..
T Consensus 151 ~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~gad~~~~d~~ 224 (282)
T 1oy3_D 151 LEAENYDGHTPLHVAVIHK-DAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAAS----VLELLLKAGADPTARMYG 224 (282)
T ss_dssp TTCCCTTSCCHHHHHHHTT-CHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTT
T ss_pred CCCcCCCCcCHHHHHHHcC-CHHHHHHHHH-cCCCCCCCCCCCCcCHHHHHHHcCCHH----HHHHHHHcCCCCcccccC
Confidence 8999999999999999988 9999999999 99999999865 999999999999987 799999999999999999
Q ss_pred CCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCCCCCCCCCCCCCCCCCccCC
Q 005790 416 ARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDGNANSGSGGMSSSSTELN 473 (677)
Q Consensus 416 G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~~~~g~t~~~~~~~~~~~~ 473 (677)
|+||||+|+.... .+++++|+++||+++.++..|.|+.......+..+
T Consensus 225 g~tpL~~A~~~~~----------~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~~ 272 (282)
T 1oy3_D 225 GRTPLGSALLRPN----------PILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSD 272 (282)
T ss_dssp SCCHHHHHHTSSC----------HHHHHHHHHTTCCCCCCC-----------------
T ss_pred CCCHHHHHHHcCC----------cHHHHHHHHcCCCcCcCCCcccccccccCCccccc
Confidence 9999999987432 88999999999999999999999887776555443
No 21
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=7.5e-37 Score=311.05 Aligned_cols=226 Identities=22% Similarity=0.180 Sum_probs=177.9
Q ss_pred cccCcHHHHHHHcC-------------CHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHH
Q 005790 24 WWYASPIDWAAANG-------------HYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLF 90 (677)
Q Consensus 24 ~~g~TpL~~Aa~~G-------------~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lL 90 (677)
..|.||||+||..| +.++|++|++.|++++.. ....+.|+||+|+..++.+++++|
T Consensus 8 ~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~-----------~d~~g~t~L~~A~~~g~~~~v~~L 76 (253)
T 1yyh_A 8 PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ-----------TDRTGETALHLAARYSRSDAAKRL 76 (253)
T ss_dssp --------------------------------------------C-----------CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccc-----------cCCCCCcHHHHHHHcCCHHHHHHH
Confidence 34789999999988 999999999999987532 356789999999999999999999
Q ss_pred HhhhhcCCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcc
Q 005790 91 LECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPR 170 (677)
Q Consensus 91 l~~~~~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~ 170 (677)
++ .|++++.+|..|.||||+|+..|+.++|++|++.++..++..+..|.||||+|+ ..|+.+++++|+++|++++
T Consensus 77 l~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~ 151 (253)
T 1yyh_A 77 LE----ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA-RLAVEGMLEDLINSHADVN 151 (253)
T ss_dssp HH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHH-HHTCSSHHHHHHHTTCCTT
T ss_pred HH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHH-HcChHHHHHHHHHcCCCCC
Confidence 99 899999999999999999999999999999999998788888999999999986 6699999999999999988
Q ss_pred cccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHh
Q 005790 171 FLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIA 250 (677)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~ 250 (677)
..+.. |.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++
T Consensus 152 ~~d~~-------------------g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 211 (253)
T 1yyh_A 152 AVDDL-------------------GKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLD 211 (253)
T ss_dssp CBCTT-------------------SCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CcCCC-------------------CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 76544 478999999999999999999999998 7889999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 005790 251 SFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285 (677)
Q Consensus 251 ~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g 285 (677)
+|++++.+|..|.|||++|+..|+.+++++|....
T Consensus 212 ~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 212 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred cCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 99999999999999999999999999999998754
No 22
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=5.9e-37 Score=308.10 Aligned_cols=230 Identities=23% Similarity=0.240 Sum_probs=191.1
Q ss_pred hhhcCCCChHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCc
Q 005790 102 LIRAGYGGWLLYTAASAGDLGFVKQLLDK---NPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGE 178 (677)
Q Consensus 102 ~~~d~~G~t~L~~Aa~~g~~eivk~LL~~---g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~ 178 (677)
+.+|..|.||||+||..|+.++|++|++. ....++..+..|.||||+|+ ..|+.+++++|+++|++++..+..
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~--- 78 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV-ITTLPSVVRLLVTAGASPMALDRH--- 78 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT---
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHH-HcCCHHHHHHHHHcCCCccccCCC---
Confidence 45788999999999999999999999972 34467778889999999985 679999999999999988866544
Q ss_pred chhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCC----CccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 005790 179 LEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCT----DVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254 (677)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga----~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~ 254 (677)
|.||||+|+..|+.+++++|++.++ ++ +..+..|.||||+|+..|+.+++++|+++|++
T Consensus 79 ----------------g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 141 (241)
T 1k1a_A 79 ----------------GQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGAD 141 (241)
T ss_dssp ----------------SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred ----------------CCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3689999999999999999999988 55 67888999999999999999999999999999
Q ss_pred CCCCC-CCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccch
Q 005790 255 INSTD-HQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNM 333 (677)
Q Consensus 255 in~~d-~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~ 333 (677)
++..+ ..|.||||+|+..|+.+++++|++.| .+
T Consensus 142 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~--------------------------------------------- 175 (241)
T 1k1a_A 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-AN--------------------------------------------- 175 (241)
T ss_dssp TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CC---------------------------------------------
T ss_pred cccccccCCCcHHHHHHHcCCHHHHHHHHHcC-CC---------------------------------------------
Confidence 99988 78999999999999999999999887 33
Q ss_pred hhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCC
Q 005790 334 EDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGG 407 (677)
Q Consensus 334 ~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Ga 407 (677)
++.+|..|.||||+|+..+ +.+++++|++ .|+|++.+|..|.||||+|+..++.+ +++.|++.++
T Consensus 176 ---~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~----i~~~l~~~~a 240 (241)
T 1k1a_A 176 ---VNAQMYSGSSALHSASGRG-LLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVID----ILRGKATRPA 240 (241)
T ss_dssp ---TTCBCTTSCBHHHHHHHHT-CHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHHH----HHTC------
T ss_pred ---CCCcCCCCCCHHHHHHHcC-CHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhcCcHH----HHhhhccCCC
Confidence 4555777888888888877 8889999988 88888888888889999888888766 5776666554
No 23
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=319.58 Aligned_cols=233 Identities=25% Similarity=0.255 Sum_probs=166.9
Q ss_pred hcCCCChHHHHHHHcCCHHHHHHHHHcCCCc-------cccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccC
Q 005790 104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLL-------VFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKG 176 (677)
Q Consensus 104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~-------~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~ 176 (677)
+|..+.++|+.||..|+.++|++||+.++.+ ++..+..|.|||++|+...+...++++|++.|+++|..+..
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~- 85 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD- 85 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT-
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC-
Confidence 4666789999999999999999999988753 34566778899999875544556889999999988876554
Q ss_pred CcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCC
Q 005790 177 GELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIIN 256 (677)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in 256 (677)
|+||||+|+..|+.++|++|++.|+++ +..+..|.||||+|+..++.+++++|+++|++++
T Consensus 86 ------------------G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n 146 (269)
T 4b93_B 86 ------------------GSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN 146 (269)
T ss_dssp ------------------SCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC
T ss_pred ------------------CCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCCC
Confidence 368999999999999999999999988 7788899999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhh
Q 005790 257 STDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI 336 (677)
Q Consensus 257 ~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~ 336 (677)
.+|..|.||||+|+..|+.+++++|++.|+ +
T Consensus 147 ~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga-d------------------------------------------------ 177 (269)
T 4b93_B 147 KKDLSGNTPLIYACSGGHHELVALLLQHGA-S------------------------------------------------ 177 (269)
T ss_dssp CCCTTCCCHHHHHHHTTCGGGHHHHHHTTC-C------------------------------------------------
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCC-C------------------------------------------------
Confidence 999999999999999999999999998873 2
Q ss_pred hhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCC
Q 005790 337 INAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFG 410 (677)
Q Consensus 337 in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin 410 (677)
+|.++..|.||||+|+..| +.++|++||+ .|+|+|.+|..|+||||+|+.+++ + ..+++.|...++.++
T Consensus 178 vn~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~~--i-~~lL~~l~~~~~~~~ 246 (269)
T 4b93_B 178 INASNNKGNTALHEAVIEK-HVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNSK--I-MELLQVVPSCVASLD 246 (269)
T ss_dssp TTCBCTTSCBHHHHHHHTT-CHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTCH--H-HHHTTC---------
T ss_pred CCccccCCCcHHHHHHHcC-CHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCCc--H-HHHHHHHHHhchhhh
Confidence 5667888999999999988 9999999999 999999999999999999988764 2 235556666655443
No 24
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.9e-36 Score=302.77 Aligned_cols=226 Identities=26% Similarity=0.312 Sum_probs=208.7
Q ss_pred cchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC
Q 005790 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ 274 (677)
Q Consensus 195 ~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~ 274 (677)
+.+|||.|+..|+.++++.|++.+....+..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 85 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX 85 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence 46899999999999999999999887768889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhC
Q 005790 275 PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITG 354 (677)
Q Consensus 275 ~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~ 354 (677)
.+++++|++.+ .+++..+..|.||||+|+.. ++.+++++|++.+ ++++.++..|.||||+|+..
T Consensus 86 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~----------~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~ 149 (231)
T 3aji_A 86 DEIVKALLVKG-AHVNAVNQNGCTPLHYAASK----------NRHEIAVMLLEGG-----ANPDAKDHYDATAMHRAAAK 149 (231)
T ss_dssp HHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT----------TCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHc----------CCHHHHHHHHHcC-----CCCCCcCCCCCcHHHHHHHc
Confidence 99999999998 67899999999999999995 4566777776655 55888999999999999998
Q ss_pred CCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCC
Q 005790 355 NVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPG 434 (677)
Q Consensus 355 ~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~ 434 (677)
+ +.+++++|++ .|++++.+|..|.||||+|+..++.+ ++++|+++|++++.+|..|+|||++|.....
T Consensus 150 ~-~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~------ 217 (231)
T 3aji_A 150 G-NLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVE----EAKFLVTQGASIYIENKEEKTPLQVAKGGLG------ 217 (231)
T ss_dssp T-CHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHSCHHHH------
T ss_pred C-CHHHHHHHHh-cCCCccccCCCCCCHHHHHHHCCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHhhHH------
Confidence 8 9999999999 99999999999999999999999977 7899999999999999999999999876533
Q ss_pred CccchhhHHHHHHcCCCC
Q 005790 435 TSFRISDTEIFLYTGIDV 452 (677)
Q Consensus 435 ~~~~~~~v~~LL~~Gad~ 452 (677)
.+++++|+++|+++
T Consensus 218 ----~~i~~lL~~~~a~i 231 (231)
T 3aji_A 218 ----LILKRLAEGEEASM 231 (231)
T ss_dssp ----HHHHHHHHHHHHCC
T ss_pred ----HHHHHHHccccccC
Confidence 78999999999874
No 25
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.2e-35 Score=298.12 Aligned_cols=215 Identities=26% Similarity=0.259 Sum_probs=122.7
Q ss_pred ccccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCch
Q 005790 23 QWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSL 102 (677)
Q Consensus 23 ~~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~ 102 (677)
+..|.||||+||..|+.++|++|+++|++++.
T Consensus 8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------------------------------------------ 39 (237)
T 3b7b_A 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDT------------------------------------------------ 39 (237)
T ss_dssp SCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTC------------------------------------------------
T ss_pred cCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCc------------------------------------------------
Confidence 34578999999999999999999998877642
Q ss_pred hhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcC-CCcccccccCCcchh
Q 005790 103 IRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFA-VSPRFLTAKGGELEE 181 (677)
Q Consensus 103 ~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~G-ad~~~~~~~~~~~~~ 181 (677)
.+..|.||||+|+..|+.++|++|++.|+ .++..+..|.||||+|+ ..|+.+++++|+++| ++++..+..
T Consensus 40 -~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-~~~~~~~~~~Ll~~~~~~~~~~~~~------ 110 (237)
T 3b7b_A 40 -CSEDQRTPLMEAAENNHLEAVKYLIKAGA-LVDPKDAEGSTCLHLAA-KKGHYEVVQYLLSNGQMDVNCQDDG------ 110 (237)
T ss_dssp -CCTTCCCHHHHHHHTTCHHHHHHHHTTTC-CCCCCCTTSCCHHHHHH-HTTCHHHHHHHHTTTCCCTTCCCTT------
T ss_pred -cCCCCCCHHHHHHHhCCHHHHHHHHhCCC-CCCCCCCCCCcHHHHHH-HcCCHHHHHHHHhCCCCCcccCCCC------
Confidence 23345555555555555555555555544 23334445555555543 345555555555555 444433222
Q ss_pred hhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCC
Q 005790 182 HIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ 261 (677)
Q Consensus 182 ~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~ 261 (677)
|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++..|..
T Consensus 111 -------------g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 176 (237)
T 3b7b_A 111 -------------GWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH 176 (237)
T ss_dssp -------------SCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTT
T ss_pred -------------CCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCC
Confidence 234555555555555555555555554 445555555555555555555555555555555555555
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCch
Q 005790 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQT 309 (677)
Q Consensus 262 g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~ 309 (677)
|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++.
T Consensus 177 g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 177 GDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTCHH
T ss_pred CCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHHHH
Confidence 555555555555555555555555 34555555555555555555544
No 26
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.7e-36 Score=310.46 Aligned_cols=249 Identities=14% Similarity=0.020 Sum_probs=184.7
Q ss_pred ccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhh
Q 005790 25 WYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIR 104 (677)
Q Consensus 25 ~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~ 104 (677)
.|.||||+||..|+.++|++||++|++++.- -.....+.||||+|+..++.+++++|++ .|++++.+
T Consensus 8 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~ 74 (282)
T 1oy3_D 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYL---------DLQNDLGQTALHLAAILGEASTVEKLYA----AGAGVLVA 74 (282)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGG---------GCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTCCSSCC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCcccc---------cccCCCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCC
Confidence 4779999999999999999999999984310 0235578999999999999999999999 89999999
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHHcCCCccc------------cCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccc
Q 005790 105 AGYGGWLLYTAASAGDLGFVKQLLDKNPLLVF------------GEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFL 172 (677)
Q Consensus 105 d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~------------~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~ 172 (677)
+..|.||||+|+..|+.++|++|+++++.... .....+.++++.++.......+...+...+++++..
T Consensus 75 ~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (282)
T 1oy3_D 75 ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154 (282)
T ss_dssp CTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCC
T ss_pred CCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc
Confidence 99999999999999999999999998764221 112345566666655545555566666666655544
Q ss_pred cccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCC-CCCCcHHHHHHHhCCHHHHHHHHhc
Q 005790 173 TAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRD-KQGSTILHAAAGRGQVEVVKDLIAS 251 (677)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d-~~g~TpL~~A~~~g~~eivk~Ll~~ 251 (677)
+. .|.||||+|+..|+.++|++|+++|+++ +..+ ..|+||||+|+..|+.++|++|+++
T Consensus 155 ~~-------------------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 214 (282)
T 1oy3_D 155 NY-------------------DGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKA 214 (282)
T ss_dssp CT-------------------TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CC-------------------CCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 33 3579999999999999999999999999 5555 5699999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcC
Q 005790 252 FDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGF 307 (677)
Q Consensus 252 ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~ 307 (677)
|++++.+|..|.||||+|+..|+.+++++|+++| ++++.++..|.|||++|....
T Consensus 215 gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 215 GADPTARMYGGRTPLGSALLRPNPILARLLRAHG-APEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT-CCCCCCC--------------
T ss_pred CCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcC-CCcCcCCCcccccccccCCcc
Confidence 9999999999999999999999999999999999 779999999999999998743
No 27
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3e-36 Score=302.96 Aligned_cols=228 Identities=23% Similarity=0.237 Sum_probs=201.5
Q ss_pred hhhccchHHHHHHhcCCHHHHHHHHh----cCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 005790 191 KWEMMNRAVHAAARGGNLKILKELLE----NCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPL 266 (677)
Q Consensus 191 ~~~~~~t~Lh~A~~~g~~eivk~LL~----~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL 266 (677)
.+..|.||||+|+..|+.+++++|++ .|.++ +..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l 83 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA 83 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence 45567899999999999999999997 78888 78899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhCCC---CccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccC-C
Q 005790 267 HIAAYRGQPAVVEALILASPS---MISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKN-N 342 (677)
Q Consensus 267 ~~A~~~g~~~iv~~LL~~g~~---~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d-~ 342 (677)
|+|+..|+.+++++|++.++. +++..+..|.||||+|+. .++.+++++|++.+ .+++..+ .
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~----------~~~~~~~~~Ll~~g-----~~~~~~~~~ 148 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN----------TECQETVQLLLERG-----ADIDAVDIK 148 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHH----------HTCHHHHHHHHHTT-----CCTTCCCTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHH----------cCCHHHHHHHHHcC-----CCccccccc
Confidence 999999999999999999852 788899999999999998 45567777777765 4578778 7
Q ss_pred CCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHH
Q 005790 343 DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIAS 422 (677)
Q Consensus 343 ~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~ 422 (677)
.|.||||+|+..+ +.+++++|++ .|+++|.+|..|.||||+|+..++.+ ++++|+++|++++.+|..|+|||++
T Consensus 149 ~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~tpl~~ 222 (241)
T 1k1a_A 149 SGRSPLIHAVENN-SLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSSLKNCHNDTPLMV 222 (241)
T ss_dssp TCCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCTTTT
T ss_pred CCCcHHHHHHHcC-CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCCCcCCCCCCHHHH
Confidence 8999999999988 9999999999 99999999999999999999999987 7899999999999999999999998
Q ss_pred HHHHhCCCCCCCCccchhhHHHHHHcCC
Q 005790 423 HIKMLGNGSSPGTSFRISDTEIFLYTGI 450 (677)
Q Consensus 423 al~~~~~~~~~~~~~~~~~v~~LL~~Ga 450 (677)
|+.... .++++.|++.++
T Consensus 223 A~~~~~----------~~i~~~l~~~~a 240 (241)
T 1k1a_A 223 ARSRRV----------IDILRGKATRPA 240 (241)
T ss_dssp CSSHHH----------HHHHTC------
T ss_pred HHhcCc----------HHHHhhhccCCC
Confidence 876533 788999988776
No 28
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-36 Score=309.20 Aligned_cols=223 Identities=22% Similarity=0.216 Sum_probs=160.3
Q ss_pred CCccccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCC
Q 005790 21 GDQWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKN 100 (677)
Q Consensus 21 ~~~~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~ 100 (677)
-.++.+.+||+.||..|++++|++||+.|++.... ....
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~-----------------------------------------~~~~ 44 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED-----------------------------------------AEDT 44 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccc-----------------------------------------cccc
Confidence 34455679999999999999999999998764321 2223
Q ss_pred chhhcCCCChHHHHHHHcCCHH-HHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcc
Q 005790 101 SLIRAGYGGWLLYTAASAGDLG-FVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGEL 179 (677)
Q Consensus 101 ~~~~d~~G~t~L~~Aa~~g~~e-ivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~ 179 (677)
++..+..|.|||++|+..++.+ ++++|++.|+ +++..|.+|.||||+|| ..|+.++|++|+++|++++..+..
T Consensus 45 ~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Ga-dvn~~d~~G~TpLh~A~-~~g~~~~v~~Ll~~~a~~~~~~~~---- 118 (269)
T 4b93_B 45 VSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL-GVNVTSQDGSSPLHVAA-LHGRADLIPLLLKHGANAGARNAD---- 118 (269)
T ss_dssp ------------------------------CCC-CTTCCCTTSCCHHHHHH-HTTCTTHHHHHHHTTCCTTCCCTT----
T ss_pred ccccCccCCCHHHHHHHhCCHHHHHHHHHHCCC-CCCCcCCCCCCHHHHHH-HcCcHHHHHHHHhcCCCcCccCCC----
Confidence 4556777888999988877754 7888888887 56778888999999885 668999999999999888766544
Q ss_pred hhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCC
Q 005790 180 EEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD 259 (677)
Q Consensus 180 ~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d 259 (677)
|.||+|+|+..++.+++++|++.|+++ +.+|..|+||||+|+..|+.++|++|+++|+++|..+
T Consensus 119 ---------------g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~ 182 (269)
T 4b93_B 119 ---------------QAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN 182 (269)
T ss_dssp ---------------CCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBC
T ss_pred ---------------CCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccc
Confidence 368999999999999999999999998 7788999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcC
Q 005790 260 HQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGF 307 (677)
Q Consensus 260 ~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~ 307 (677)
..|.||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+.++
T Consensus 183 ~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 183 NKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp TTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTC
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCC
Confidence 99999999999999999999999988 678899999999999998754
No 29
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.6e-35 Score=295.13 Aligned_cols=215 Identities=23% Similarity=0.273 Sum_probs=189.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcch
Q 005790 108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP 187 (677)
Q Consensus 108 G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~ 187 (677)
|.||||+||..|+.++|++|++.++......+..|.||||+|+ ..|+.+++++|+++|++++....
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~------------- 67 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV-SFQAHEITSFLLSKMENVNLDDY------------- 67 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTCTTCCGGGC-------------
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHH-HcCCHHHHHHHHhcccccccccc-------------
Confidence 7899999999999999999999998777778999999999985 77999999999999965553321
Q ss_pred hhhhhhccchHHHHHHhcCCHHHHHHHHhcC--CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 005790 188 SVYKWEMMNRAVHAAARGGNLKILKELLENC--TDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP 265 (677)
Q Consensus 188 ~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~g--a~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tp 265 (677)
.+..|.||||+|+..|+.+++++|+++| +++ +..+..|.||||+|+..|+.+++++|+++|++++..|..|.||
T Consensus 68 ---~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 143 (228)
T 2dzn_A 68 ---PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIP 143 (228)
T ss_dssp ---CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred ---CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCH
Confidence 1223579999999999999999999998 777 7788999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCc
Q 005790 266 LHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGR 345 (677)
Q Consensus 266 L~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~ 345 (677)
||+|+..|+.+++++|++.+..+ ++.+|..|.
T Consensus 144 L~~A~~~~~~~~v~~Ll~~g~~~------------------------------------------------~~~~d~~g~ 175 (228)
T 2dzn_A 144 LHRAASVGSLKLIELLCGLGKSA------------------------------------------------VNWQDKQGW 175 (228)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCC------------------------------------------------SCCCCTTSC
T ss_pred HHHHHHcCCHHHHHHHHhcCccc------------------------------------------------ccCcCCCCC
Confidence 99999999999999999888443 455677889
Q ss_pred hHHHHHHhCCCcHHHHHHHh-hCCCCCccccCCCCCcHHHHHhhCC
Q 005790 346 TALHMAITGNVHLELVQLLM-SAPSINVNVRDNDGMTTLDLLKQRP 390 (677)
Q Consensus 346 TpLh~A~~~~~~~eiv~lLL-~~~Gadin~~d~~G~TpL~~A~~~~ 390 (677)
||||+|+..+ +.+++++|+ + .|+|++.+|..|+|||++|+..+
T Consensus 176 t~L~~A~~~~-~~~~v~~Ll~~-~ga~~~~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 176 TPLFHALAEG-HGDAAVLLVEK-YGAEYDLVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp CHHHHHHHTT-CHHHHHHHHHH-HCCCSCCBCTTSCBGGGGCSSTT
T ss_pred CHHHHHHHcC-CHHHHHHHHHh-cCCCCCccCCCCCcHHHHHHHHH
Confidence 9999999988 999999999 6 89999999999999999997653
No 30
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.2e-35 Score=296.04 Aligned_cols=220 Identities=23% Similarity=0.271 Sum_probs=198.2
Q ss_pred cchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcC--CCCCC-CCCCCCcHHHHHHH
Q 005790 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASF--DIINS-TDHQGNTPLHIAAY 271 (677)
Q Consensus 195 ~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~g--a~in~-~d~~g~tpL~~A~~ 271 (677)
|+||||+|+..|+.++|++|++.++++.+..+..|.||||+|+..|+.+++++|+++| .+++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 6799999999999999999999999987778999999999999999999999999999 55555 78899999999999
Q ss_pred cCCHHHHHHHHHhC-CCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHH
Q 005790 272 RGQPAVVEALILAS-PSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM 350 (677)
Q Consensus 272 ~g~~~iv~~LL~~g-~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~ 350 (677)
.|+.+++++|++.+ ..+++..+..|.||||+|+.. ++.+++++|++.+ ++++.+|..|.||||+
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~----------~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~ 146 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK----------KWFEVSQFLIENG-----ASVRIKDKFNQIPLHR 146 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHT----------TCHHHHHHHHHTT-----CCSCCCCTTSCCHHHH
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHc----------CCHhHHHHHHHcC-----CCccccCCCCCCHHHH
Confidence 99999999999987 366888999999999999984 5566777777664 5689999999999999
Q ss_pred HHhCCCcHHHHHHHhhCCC-CCccccCCCCCcHHHHHhhCCCCchHHHHHHHHH-HcCCCCCCCcccCCchHHHHHHHhC
Q 005790 351 AITGNVHLELVQLLMSAPS-INVNVRDNDGMTTLDLLKQRPQSASSDILIRHLI-SAGGIFGCQDYSARRAIASHIKMLG 428 (677)
Q Consensus 351 A~~~~~~~eiv~lLL~~~G-adin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll-~~Gadin~~d~~G~T~L~~al~~~~ 428 (677)
|+..+ +.+++++|++ .| +++|.+|..|+||||+|+..++.+ ++++|+ ++|++++.+|..|+|||++|..
T Consensus 147 A~~~~-~~~~v~~Ll~-~g~~~~~~~d~~g~t~L~~A~~~~~~~----~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~--- 217 (228)
T 2dzn_A 147 AASVG-SLKLIELLCG-LGKSAVNWQDKQGWTPLFHALAEGHGD----AAVLLVEKYGAEYDLVDNKGAKAEDVALN--- 217 (228)
T ss_dssp HHHTT-CHHHHHHHHT-TTCCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHHHCCCSCCBCTTSCBGGGGCSS---
T ss_pred HHHcC-CHHHHHHHHh-cCcccccCcCCCCCCHHHHHHHcCCHH----HHHHHHHhcCCCCCccCCCCCcHHHHHHH---
Confidence 99988 9999999999 88 999999999999999999999987 688888 8999999999999999998744
Q ss_pred CCCCCCCccchhhHHHHHHc
Q 005790 429 NGSSPGTSFRISDTEIFLYT 448 (677)
Q Consensus 429 ~~~~~~~~~~~~~v~~LL~~ 448 (677)
.+++++|+++
T Consensus 218 ----------~~~~~~l~~~ 227 (228)
T 2dzn_A 218 ----------EQVKKFFLNN 227 (228)
T ss_dssp ----------TTHHHHHHTT
T ss_pred ----------HHHHHHHHhc
Confidence 4578888764
No 31
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=8.4e-35 Score=291.45 Aligned_cols=234 Identities=26% Similarity=0.337 Sum_probs=175.1
Q ss_pred hhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchh
Q 005790 102 LIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEE 181 (677)
Q Consensus 102 ~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~ 181 (677)
+..|.+|.|+|++|+..|+.++|++|++.|. +++..+..|.||||+|+ ..|+.+++++|+++|++++.....
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~~------ 74 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGY-DVRQPDKENVTLLHWAA-INNRIDLVKYYISKGAIVDQLGGD------ 74 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCBTT------
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCC-CcCCCCCCCCCHHHHHH-HhCCHHHHHHHHHcCCcchhhcCC------
Confidence 3456677778888888888888888887775 45566777777777774 667778888888777766544322
Q ss_pred hhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCC
Q 005790 182 HIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ 261 (677)
Q Consensus 182 ~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~ 261 (677)
.+.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus 75 ------------~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~ 141 (240)
T 3eu9_A 75 ------------LNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN 141 (240)
T ss_dssp ------------TTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred ------------cCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCC
Confidence 1357777777777777777777777777 667777777777777777777777777777777777777
Q ss_pred CCcHHHHHHHcCC-HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhcc
Q 005790 262 GNTPLHIAAYRGQ-PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAK 340 (677)
Q Consensus 262 g~tpL~~A~~~g~-~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~ 340 (677)
|.||||+|+..++ .+++++|++.+. + ++..
T Consensus 142 g~t~l~~a~~~~~~~~~~~~L~~~~~-~------------------------------------------------~~~~ 172 (240)
T 3eu9_A 142 GMTPLMWAAYRTHSVDPTRLLLTFNV-S------------------------------------------------VNLG 172 (240)
T ss_dssp SCCHHHHHHHHCCSSTTHHHHHHTTC-C------------------------------------------------TTCC
T ss_pred CCcHHHHHHHhCChHHHHHHHHhcCC-C------------------------------------------------cchh
Confidence 7777777775554 667777776662 2 4445
Q ss_pred CC-CCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCC
Q 005790 341 NN-DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGC 411 (677)
Q Consensus 341 d~-~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~ 411 (677)
+. .|.||||+|+..+ +.+++++|++ .|++++.+|..|.|||++|+..++.+ ++++|+++|++...
T Consensus 173 ~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~----~v~~L~~~~~~~~~ 238 (240)
T 3eu9_A 173 DKYHKNTALHWAVLAG-NTTVISLLLE-AGANVDAQNIKGESALDLAKQRKNVW----MINHLQEARQAKGY 238 (240)
T ss_dssp CTTTCCCHHHHHHHHT-CHHHHHHHHH-HTCCTTCBCTTSCBHHHHHHHTTCHH----HHHHHHHHC-----
T ss_pred hccCCCcHHHHHHHcC-CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHH----HHHHHHHhhhccCc
Confidence 54 7889999999988 9999999999 89999999999999999999999987 68888888877543
No 32
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=289.55 Aligned_cols=235 Identities=19% Similarity=0.175 Sum_probs=199.3
Q ss_pred ccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHH
Q 005790 136 FGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELL 215 (677)
Q Consensus 136 ~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL 215 (677)
+..|.+|.|+|++|+ ..|+.+++++|++.|++++..+.. |.||||+|+..|+.+++++|+
T Consensus 3 ~~~d~~~~~~l~~A~-~~g~~~~~~~Ll~~g~~~~~~~~~-------------------g~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 3 THIDDYSTWDIVKAT-QYGIYERCRELVEAGYDVRQPDKE-------------------NVTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp CCCSCGGGCCHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT-------------------SCCHHHHHHHTTCHHHHHHHH
T ss_pred cccccccchHHHHHH-HcCChHHHHHHHHcCCCcCCCCCC-------------------CCCHHHHHHHhCCHHHHHHHH
Confidence 345778889998874 779999999999999888765543 368999999999999999999
Q ss_pred hcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCC
Q 005790 216 ENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTS 295 (677)
Q Consensus 216 ~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~ 295 (677)
++|+++....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+. +
T Consensus 63 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~-~------- 134 (240)
T 3eu9_A 63 SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ-D------- 134 (240)
T ss_dssp HTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-C-------
T ss_pred HcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCC-C-------
Confidence 99998866666778899999999999999999999999999888889999999999999999999988773 2
Q ss_pred CCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCcccc
Q 005790 296 GETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVR 375 (677)
Q Consensus 296 g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~ 375 (677)
++.++..|.||||+|+..+...+++++|++ .|++++..
T Consensus 135 -----------------------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~-~~~~~~~~ 172 (240)
T 3eu9_A 135 -----------------------------------------VDMMDQNGMTPLMWAAYRTHSVDPTRLLLT-FNVSVNLG 172 (240)
T ss_dssp -----------------------------------------TTCCCTTSCCHHHHHHHHCCSSTTHHHHHH-TTCCTTCC
T ss_pred -----------------------------------------ccccCCCCCcHHHHHHHhCChHHHHHHHHh-cCCCcchh
Confidence 455677889999999976646899999999 99999999
Q ss_pred CC-CCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCC
Q 005790 376 DN-DGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSS 454 (677)
Q Consensus 376 d~-~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~ 454 (677)
+. .|.||||+|+..++.+ ++++|+++|++++.+|..|+|||++|+.... .+++++|+++|++..-
T Consensus 173 ~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~----------~~~v~~L~~~~~~~~~ 238 (240)
T 3eu9_A 173 DKYHKNTALHWAVLAGNTT----VISLLLEAGANVDAQNIKGESALDLAKQRKN----------VWMINHLQEARQAKGY 238 (240)
T ss_dssp CTTTCCCHHHHHHHHTCHH----HHHHHHHHTCCTTCBCTTSCBHHHHHHHTTC----------HHHHHHHHHHC-----
T ss_pred hccCCCcHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc----------HHHHHHHHHhhhccCc
Confidence 97 9999999999999987 7899999999999999999999999988543 8899999999998653
No 33
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.1e-35 Score=292.31 Aligned_cols=219 Identities=20% Similarity=0.214 Sum_probs=199.3
Q ss_pred cCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005790 205 GGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILA 284 (677)
Q Consensus 205 ~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~ 284 (677)
.|+.+++++|+++|++++...|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 36788999999999999777799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHH
Q 005790 285 SPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLL 364 (677)
Q Consensus 285 g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lL 364 (677)
++.+++..+..|.||||+|+. .++.+++++|++.+ ++++.+|..|.||||+|+..+ +.+++++|
T Consensus 81 ~~~~~~~~~~~g~t~L~~A~~----------~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~-~~~~v~~L 144 (223)
T 2f8y_A 81 RATDLDARMHDGTTPLILAAR----------LAVEGMLEDLINSH-----ADVNAVDDLGKSALHWAAAVN-NVDAAVVL 144 (223)
T ss_dssp TTSCTTCCCTTCCCHHHHHHH----------HTCHHHHHHHHHTT-----CCTTCBCTTSCBHHHHHHHTT-CHHHHHHH
T ss_pred CCCCcccCCCCCCcHHHHHHH----------hCcHHHHHHHHHcC-----CCCcCcCCCCCcHHHHHHHcC-CHHHHHHH
Confidence 977899999999999999999 45667777777755 458899999999999999988 99999999
Q ss_pred hhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHH
Q 005790 365 MSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEI 444 (677)
Q Consensus 365 L~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~ 444 (677)
++ .|++++.+|..|.||||+|+..++.+ ++++|+++|++++.+|..|.|||++|+.... .+++++
T Consensus 145 l~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~----------~~i~~~ 209 (223)
T 2f8y_A 145 LK-NGANKDMQNNREETPLFLAAREGSYE----TAKVLLDHFANRDITDHMDRLPRDIAQERMH----------HDIVRL 209 (223)
T ss_dssp HH-TTCCTTCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC----------HHHHHH
T ss_pred HH-cCCCCCCcCCCCcCHHHHHHHcCCHH----HHHHHHHcCCCCccccccCCCHHHHHHHhcc----------hHHHHH
Confidence 99 89999999999999999999999987 7999999999999999999999999988533 889999
Q ss_pred HHHcCCCCCC
Q 005790 445 FLYTGIDVSS 454 (677)
Q Consensus 445 LL~~Gad~~~ 454 (677)
|+++|+....
T Consensus 210 L~~~g~~~~~ 219 (223)
T 2f8y_A 210 LDEYNLVRSP 219 (223)
T ss_dssp HHHTTCSSCC
T ss_pred HHHcCCCccc
Confidence 9999998654
No 34
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=5.2e-35 Score=304.14 Aligned_cols=252 Identities=23% Similarity=0.219 Sum_probs=206.6
Q ss_pred HhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCC
Q 005790 151 ARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGS 230 (677)
Q Consensus 151 ~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~ 230 (677)
+..++.+.++.++....++........ .......+.|+||.|+..|+.++|++|+++|+++ +..+..|.
T Consensus 6 a~~~~~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~ 74 (299)
T 1s70_B 6 AKQKRNEQLKRWIGSETDLEPPVVKRK----------KTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGL 74 (299)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCSCCCCS----------CCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCC
T ss_pred HHHHHHHHHHHHHccccccccccccCc----------ccccccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCC
Confidence 455777777777776655443222211 1112234579999999999999999999999998 78999999
Q ss_pred cHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchH
Q 005790 231 TILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTY 310 (677)
Q Consensus 231 TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~ 310 (677)
||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|+++| ++++..+..|.||||+|+..+...
T Consensus 75 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~ 153 (299)
T 1s70_B 75 TALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG-AHVGAVNSEGDTPLDIAEEEAMEE 153 (299)
T ss_dssp BHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCSHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHhcchHH
Confidence 9999999999999999999999999999999999999999999999999999998 678999999999999999966665
Q ss_pred HHHHhhHH----------------HHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccc
Q 005790 311 AFRRLDRQ----------------VKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNV 374 (677)
Q Consensus 311 ~~~~L~~~----------------~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~ 374 (677)
.+..+... ...+..++..+.. .....+..|.||||+|+..+ +.++|++|++ .|+|+|.
T Consensus 154 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~-~g~d~~~ 227 (299)
T 1s70_B 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI----NDVRHAKSGGTALHVAAAKG-YTEVLKLLIQ-ARYDVNI 227 (299)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC----CCCCCTTTCCCHHHHHHHHT-CHHHHHHHHT-TTCCTTC
T ss_pred HHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc----chhhhcCCCCCHHHHHHHCC-cHHHHHHHHH-cCCCCCC
Confidence 55543211 1112222222211 12335678999999999998 9999999999 9999999
Q ss_pred cCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHH
Q 005790 375 RDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHI 424 (677)
Q Consensus 375 ~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al 424 (677)
+|..|.||||+|+..|+.+ ++++|+++|++++.+|..|+|||++|.
T Consensus 228 ~d~~g~tpL~~A~~~~~~~----~v~~Ll~~gad~~~~d~~g~t~l~~A~ 273 (299)
T 1s70_B 228 KDYDGWTPLHAAAHWGKEE----ACRILVENLCDMEAVNKVGQTAFDVAD 273 (299)
T ss_dssp CCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred cCCCCCcHHHHHHhcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 9999999999999999987 789999999999999999999999874
No 35
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.8e-35 Score=305.24 Aligned_cols=231 Identities=19% Similarity=0.191 Sum_probs=136.9
Q ss_pred ccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHH
Q 005790 136 FGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELL 215 (677)
Q Consensus 136 ~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL 215 (677)
+..|..|.||||+|| ..|+.+++++|+++|++++..+ |.||||+|+..|+.+++++|+
T Consensus 25 ~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~---------------------g~t~L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 25 FKADVHGHSASYYAI-ADNNVRLVCTLLNAGALKNLLE---------------------NEFPLHQAATLEDTKIVKILL 82 (285)
T ss_dssp TCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTGGGSCCT---------------------TCCHHHHHTTSSSCHHHHHHH
T ss_pred CccCCCCCCHHHHHH-HcCCHHHHHHHHhCCCCCCCCC---------------------CCCHHHHHHHcCCHHHHHHHH
Confidence 444455555555543 3455555555555555444321 235555555555555555555
Q ss_pred hcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCC-CcHHHHHHHcCCHHHHHHHHHhCCCCccccCC
Q 005790 216 ENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQG-NTPLHIAAYRGQPAVVEALILASPSMISVKNT 294 (677)
Q Consensus 216 ~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g-~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~ 294 (677)
++|+++ +..+..|+||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|+++++...+. .
T Consensus 83 ~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~ 159 (285)
T 3kea_A 83 FSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--A 159 (285)
T ss_dssp HTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC--S
T ss_pred HCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc--c
Confidence 555555 4455555555555555555555555555555555555555 45555555555555555555555322111 1
Q ss_pred CCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchH-HHHHHhCCCcHHHHHHHhhCCCCCcc
Q 005790 295 SGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTA-LHMAITGNVHLELVQLLMSAPSINVN 373 (677)
Q Consensus 295 ~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~Tp-Lh~A~~~~~~~eiv~lLL~~~Gadin 373 (677)
.|.||||+|+..+ +.+++++|++. +++++.+|..|.|| ||+|+..+ +.+++++|++ .|+|++
T Consensus 160 ~g~t~L~~A~~~g----------~~~~v~~Ll~~-----gad~n~~~~~g~t~~L~~A~~~~-~~~~v~~Ll~-~gad~~ 222 (285)
T 3kea_A 160 ILLSCIHITIKNG----------HVDMMILLLDY-----MTSTNTNNSLLFIPDIKLAIDNK-DIEMLQALFK-YDINIY 222 (285)
T ss_dssp THHHHHHHHHHTT----------CHHHHHHHHHH-----HHHTCTTCCCBCCTTHHHHHHHT-CHHHHHHHTT-SCBCST
T ss_pred CCccHHHHHHHcC----------hHHHHHHHHHc-----CCCCCcccCCCCChHHHHHHHcC-CHHHHHHHHH-cCCCCC
Confidence 4555555555532 23333333332 34577888889887 99999888 9999999999 899999
Q ss_pred ccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCch
Q 005790 374 VRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRA 419 (677)
Q Consensus 374 ~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~ 419 (677)
.+| +.|+..++.+ ++++|+++|++++.........
T Consensus 223 ~~~-------~~a~~~~~~~----iv~~Ll~~g~~~~~~~~~~~~~ 257 (285)
T 3kea_A 223 SAN-------LENVLLDDAE----IAKMIIEKHVEYKSDSYTKDLD 257 (285)
T ss_dssp TTT-------GGGGTTTCHH----HHHHHHHHHHHHTTCTTTTTCH
T ss_pred CCC-------hhhhhcCCHH----HHHHHHHcCCCCCCccccchHH
Confidence 887 3567777766 7888889998888766555444
No 36
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.5e-34 Score=287.34 Aligned_cols=217 Identities=20% Similarity=0.225 Sum_probs=177.2
Q ss_pred CCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchH
Q 005790 119 GDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRA 198 (677)
Q Consensus 119 g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 198 (677)
|+.++|++|++.|+......+..|.||||+|| ..|+.+++++|+++|++++..+.. |.||
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~-------------------g~t~ 61 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAA-RYSRSDAAKRLLEASADANIQDNM-------------------GRTP 61 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT-------------------SCCH
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHH-HcCCHHHHHHHHHcCCCCCCcCCC-------------------CCCH
Confidence 66778888888887666666788888888875 668888888888888887765443 3678
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 005790 199 VHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVV 278 (677)
Q Consensus 199 Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv 278 (677)
||+|+..|+.+++++|+++++...+..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++
T Consensus 62 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 141 (223)
T 2f8y_A 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 141 (223)
T ss_dssp HHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHH
Confidence 88888888888888888888744477788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcH
Q 005790 279 EALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHL 358 (677)
Q Consensus 279 ~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~ 358 (677)
++|++.|. + ++.+|..|.||||+|+..+ +.
T Consensus 142 ~~Ll~~g~-~------------------------------------------------~~~~~~~g~t~L~~A~~~~-~~ 171 (223)
T 2f8y_A 142 VVLLKNGA-N------------------------------------------------KDMQNNREETPLFLAAREG-SY 171 (223)
T ss_dssp HHHHHTTC-C------------------------------------------------TTCCCTTCCCHHHHHHHHT-CH
T ss_pred HHHHHcCC-C------------------------------------------------CCCcCCCCcCHHHHHHHcC-CH
Confidence 88888763 2 4556778889999998888 99
Q ss_pred HHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCC
Q 005790 359 ELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFG 410 (677)
Q Consensus 359 eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin 410 (677)
+++++|++ .|++++.+|..|.|||++|+..++.+ ++++|+++|+...
T Consensus 172 ~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~----i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 172 ETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHD----IVRLLDEYNLVRS 218 (223)
T ss_dssp HHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCSSC
T ss_pred HHHHHHHH-cCCCCccccccCCCHHHHHHHhcchH----HHHHHHHcCCCcc
Confidence 99999999 89999999999999999999999877 6888889988754
No 37
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.9e-35 Score=306.42 Aligned_cols=238 Identities=16% Similarity=0.109 Sum_probs=205.4
Q ss_pred CCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHH
Q 005790 154 KNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTIL 233 (677)
Q Consensus 154 g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL 233 (677)
...++.++|.+. +++..+. .|.||||+|+..|+.++|++|+++|+++ +.. +|+|||
T Consensus 11 ~~~~v~~lL~~~--~~~~~d~-------------------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L 66 (285)
T 3kea_A 11 KSKQLKSFLSSK--DTFKADV-------------------HGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPL 66 (285)
T ss_dssp CHHHHHHHHHST--TTTCCCT-------------------TSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHH
T ss_pred CHHHHHHHHHhC--CCCccCC-------------------CCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHH
Confidence 455677777665 3444333 3579999999999999999999999998 444 489999
Q ss_pred HHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCC-CchhhhhhhcCchHHH
Q 005790 234 HAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSG-ETFLHSAVSGFQTYAF 312 (677)
Q Consensus 234 ~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g-~tpLh~A~~~~~~~~~ 312 (677)
|+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++| ++++..+..| .||||+|+.
T Consensus 67 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~~t~L~~A~~------- 138 (285)
T 3kea_A 67 HQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN-WRLMFYGKTGWKTSFYHAVM------- 138 (285)
T ss_dssp HHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC-GGGGGCSSSGGGSHHHHHHH-------
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCccCCCCCCCHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999998 7799999999 899999999
Q ss_pred HHhhHHHHHHHHHHcccccchhhhhhccCC-CCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcH-HHHHhhCC
Q 005790 313 RRLDRQVKLMKQLASGQIFNMEDIINAKNN-DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTT-LDLLKQRP 390 (677)
Q Consensus 313 ~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~-~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~Tp-L~~A~~~~ 390 (677)
.++.+++++|++.+ .+..+. .|.||||+|+..+ +.++|++|++ .|+|+|.+|..|+|| ||+|+..+
T Consensus 139 ---~~~~~~v~~Ll~~g-------~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~-~gad~n~~~~~g~t~~L~~A~~~~ 206 (285)
T 3kea_A 139 ---LNDVSIVSYFLSEI-------PSTFDLAILLSCIHITIKNG-HVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNK 206 (285)
T ss_dssp ---TTCHHHHHHHHTTS-------CTTCCCSTHHHHHHHHHHTT-CHHHHHHHHH-HHHHTCTTCCCBCCTTHHHHHHHT
T ss_pred ---cCCHHHHHHHHhCC-------CccccccCCccHHHHHHHcC-hHHHHHHHHH-cCCCCCcccCCCCChHHHHHHHcC
Confidence 45677888888877 223344 8999999999988 9999999999 899999999999998 99999999
Q ss_pred CCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCCCC
Q 005790 391 QSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDG 456 (677)
Q Consensus 391 ~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~~ 456 (677)
+.+ ++++|+++|++++.+|..+ ++ ....+++++|+++|++++...
T Consensus 207 ~~~----~v~~Ll~~gad~~~~~~~a-~~----------------~~~~~iv~~Ll~~g~~~~~~~ 251 (285)
T 3kea_A 207 DIE----MLQALFKYDINIYSANLEN-VL----------------LDDAEIAKMIIEKHVEYKSDS 251 (285)
T ss_dssp CHH----HHHHHTTSCBCSTTTTGGG-GT----------------TTCHHHHHHHHHHHHHHTTCT
T ss_pred CHH----HHHHHHHcCCCCCCCChhh-hh----------------cCCHHHHHHHHHcCCCCCCcc
Confidence 977 7999999999999998522 11 113889999999999987644
No 38
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=7.3e-36 Score=315.91 Aligned_cols=214 Identities=16% Similarity=0.120 Sum_probs=168.2
Q ss_pred hHHHHHHhcCCHHHHHHHHhcCCCcccc-CCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC-
Q 005790 197 RAVHAAARGGNLKILKELLENCTDVLTY-RDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ- 274 (677)
Q Consensus 197 t~Lh~A~~~g~~eivk~LL~~ga~~~~~-~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~- 274 (677)
+.+|.|+..+..+++++|++.|+++ +. .|..|+||||+|+..|+.++|++|+++|++++..|..|+||||+|+..|+
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~ 177 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN 177 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHH
T ss_pred chhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhccc
Confidence 4578899999999999999999999 66 89999999999999999999999999999999999999999999999998
Q ss_pred --HHHHHHHHHhCCCCccccCCCCCchhhhhhh----cCchHHHHHhhHHHHHHHHH-----HcccccchhhhhhccCCC
Q 005790 275 --PAVVEALILASPSMISVKNTSGETFLHSAVS----GFQTYAFRRLDRQVKLMKQL-----ASGQIFNMEDIINAKNND 343 (677)
Q Consensus 275 --~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~----~~~~~~~~~L~~~~eiv~~L-----l~~~~~~~~~~in~~d~~ 343 (677)
.++++.|++.+.++++..+..|.||||+|+. .++.++++.|......+..- +..+....+++++.++..
T Consensus 178 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 257 (327)
T 1sw6_A 178 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 257 (327)
T ss_dssp HHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--------------
T ss_pred ccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccccc
Confidence 7888999988867899999999999999998 66666666653322211000 001112226789999999
Q ss_pred CchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHH
Q 005790 344 GRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASH 423 (677)
Q Consensus 344 G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~a 423 (677)
|.||||+|+. +++|++ . ++|.+|..|+||||+|+..|+.+ ++++|+++|||++.+|..|+||||+|
T Consensus 258 g~t~L~~a~~-------~~~Ll~-~--~~n~~d~~G~TpLh~A~~~g~~~----~v~~Ll~~Gad~~~~d~~G~TpL~~A 323 (327)
T 1sw6_A 258 RKDSILENLD-------LKWIIA-N--MLNAQDSNGDTCLNIAARLGNIS----IVDALLDYGADPFIANKSGLRPVDFG 323 (327)
T ss_dssp --CHHHHHCS-------HHHHHH-H--TTTCCCTTSCCHHHHHHHHCCHH----HHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred CCChhHHHHH-------HHHHHH-h--CCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 9999999985 899999 5 78999999999999999999987 79999999999999999999999987
Q ss_pred HH
Q 005790 424 IK 425 (677)
Q Consensus 424 l~ 425 (677)
+.
T Consensus 324 ~~ 325 (327)
T 1sw6_A 324 AG 325 (327)
T ss_dssp CC
T ss_pred Hh
Confidence 54
No 39
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=7.1e-36 Score=315.99 Aligned_cols=254 Identities=15% Similarity=0.129 Sum_probs=202.4
Q ss_pred chHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc-------------CCCCCCC---H
Q 005790 82 RSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFG-------------EGEYGVT---D 145 (677)
Q Consensus 82 ~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~-------------~~~~g~t---p 145 (677)
...+++++|++ .|++++..+..|.|+++ |+.++|++||++|...... ....+.+ .
T Consensus 30 ~~~dlv~~ll~----~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (327)
T 1sw6_A 30 FTHDLTSDFLS----SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQ 100 (327)
T ss_dssp CCTTCCCSTTT----SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC----------------------------
T ss_pred hcCchHHHHhh----CCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccch
Confidence 34455777877 99999999999999987 9999999999998642210 0001111 1
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCccc-ccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCcccc
Q 005790 146 IFYAAARSKNCDVFRLIYDFAVSPRF-LTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTY 224 (677)
Q Consensus 146 L~~AA~~~g~~evv~lLl~~Gad~~~-~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~ 224 (677)
+|.+ +..+..+++++|++.|++++. .+.. |.||||+|+..|+.++|++||++|+++ +.
T Consensus 101 ~~~a-~~~~~~~~~~~l~~~g~dvn~~~d~~-------------------g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~ 159 (327)
T 1sw6_A 101 QHVS-FDSLLQEVNDAFPNTQLNLNIPVDEH-------------------GNTPLHWLTSIANLELVKHLVKHGSNR-LY 159 (327)
T ss_dssp ---C-HHHHHHHHHHHCTTSCCCSCSCCSTT-------------------CCCHHHHHHHTTCHHHHHHHHHTTCCT-TB
T ss_pred hHHH-HHhhHHHHHHHHHhcCCCcccccCCC-------------------CCcHHHHHHHcCCHHHHHHHHHcCCCC-CC
Confidence 2433 466778999999999999997 5544 479999999999999999999999999 78
Q ss_pred CCCCCCcHHHHHHHhCC---HHHHHHHHhcC-CCCCCCCCCCCcHHHHHHH----cCCHHHHHHHHHhC-----------
Q 005790 225 RDKQGSTILHAAAGRGQ---VEVVKDLIASF-DIINSTDHQGNTPLHIAAY----RGQPAVVEALILAS----------- 285 (677)
Q Consensus 225 ~d~~g~TpL~~A~~~g~---~eivk~Ll~~g-a~in~~d~~g~tpL~~A~~----~g~~~iv~~LL~~g----------- 285 (677)
+|..|+||||+|+..|+ .++++.|++.+ ++++..|..|+||||+|+. .|+.+++++|++.+
T Consensus 160 ~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 239 (327)
T 1sw6_A 160 GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP 239 (327)
T ss_dssp CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCC
T ss_pred cCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchH
Confidence 99999999999999998 78888999887 7899999999999999999 99999999999873
Q ss_pred --------CCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCc
Q 005790 286 --------PSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVH 357 (677)
Q Consensus 286 --------~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~ 357 (677)
..+++..+..|.||||+|+. +++|++.+ +|.+|..|+||||+|+..+ +
T Consensus 240 i~~~~~~~g~~~~~~~~~g~t~L~~a~~----------------~~~Ll~~~-------~n~~d~~G~TpLh~A~~~g-~ 295 (327)
T 1sw6_A 240 IQSGTNEKESKPNDKNGERKDSILENLD----------------LKWIIANM-------LNAQDSNGDTCLNIAARLG-N 295 (327)
T ss_dssp EEEC----------------CHHHHHCS----------------HHHHHHHT-------TTCCCTTSCCHHHHHHHHC-C
T ss_pred HHhhhhcccCCcccccccCCChhHHHHH----------------HHHHHHhC-------CCCCCCCCCCHHHHHHHcC-C
Confidence 47889999999999999984 56666543 8899999999999999998 9
Q ss_pred HHHHHHHhhCCCCCccccCCCCCcHHHHHhhCC
Q 005790 358 LELVQLLMSAPSINVNVRDNDGMTTLDLLKQRP 390 (677)
Q Consensus 358 ~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~ 390 (677)
.++|++||+ .|+|++.+|..|+||||+|+..|
T Consensus 296 ~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 296 ISIVDALLD-YGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHHHHH-TTCCTTCCCTTSCCGGGGTCC--
T ss_pred HHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcC
Confidence 999999999 99999999999999999998764
No 40
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.2e-33 Score=290.57 Aligned_cols=237 Identities=23% Similarity=0.171 Sum_probs=205.7
Q ss_pred ccccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCch
Q 005790 23 QWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSL 102 (677)
Q Consensus 23 ~~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~ 102 (677)
++.+.||||+||..|+.++|++||++|++++. ....+.||||+|+..++.+++++|++ .|++++
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~------------~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~ 100 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADINY------------ANVDGLTALHQACIDDNVDMVKFLVE----NGANIN 100 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTC------------BCTTCCBHHHHHHHTTCHHHHHHHHH----TTCCTT
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcc------------cCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCC
Confidence 45677999999999999999999999999874 35578999999999999999999999 899999
Q ss_pred hhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHh-cCCCcccccccCCcchh
Q 005790 103 IRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYD-FAVSPRFLTAKGGELEE 181 (677)
Q Consensus 103 ~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~-~Gad~~~~~~~~~~~~~ 181 (677)
..|..|.||||+|+..|+.++|++|+++|+ +++..+..|.||||+|+ ..++.+++++|+. .|++++.....
T Consensus 101 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~-~~~~~~~~~~ll~~~~~~~~~~~~~------ 172 (299)
T 1s70_B 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGA-HVGAVNSEGDTPLDIAE-EEAMEELLQNEVNRQGVDIEAARKE------ 172 (299)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHCC-SHHHHHHHHHHHHHHTCCHHHHHHH------
T ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCCcCCCCCCHHHHHH-hcchHHHHHHHHhhcCCCchhhhhh------
Confidence 999999999999999999999999999987 56678899999999985 7789999988776 44444322111
Q ss_pred hhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCC
Q 005790 182 HIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQ 261 (677)
Q Consensus 182 ~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~ 261 (677)
+.++++ ..+..++..+.......+..|.||||+|+..|+.+++++|+++|++++..|..
T Consensus 173 -------------~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~ 231 (299)
T 1s70_B 173 -------------EERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD 231 (299)
T ss_dssp -------------HHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT
T ss_pred -------------hhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCC
Confidence 122333 34556677777665677889999999999999999999999999999999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhh
Q 005790 262 GNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305 (677)
Q Consensus 262 g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~ 305 (677)
|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+.
T Consensus 232 g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 232 GWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADE 274 (299)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCS
T ss_pred CCcHHHHHHhcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHH
Confidence 999999999999999999999999 7899999999999999986
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.7e-33 Score=280.15 Aligned_cols=213 Identities=21% Similarity=0.208 Sum_probs=187.9
Q ss_pred cchHHHHHHhcCCHHHHHHHHhc-CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCC-----CCCCCCCCcHHHH
Q 005790 195 MNRAVHAAARGGNLKILKELLEN-CTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDII-----NSTDHQGNTPLHI 268 (677)
Q Consensus 195 ~~t~Lh~A~~~g~~eivk~LL~~-ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~i-----n~~d~~g~tpL~~ 268 (677)
|+||||+|+..|+.++|++|++. |+++ +..|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 57999999999999999999998 8888 788999999999999999999999999999987 6778899999999
Q ss_pred HHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHH
Q 005790 269 AAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTAL 348 (677)
Q Consensus 269 A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpL 348 (677)
|+..|+.+++++|+++| .+++..+.. +.++. ..+..|..|.|||
T Consensus 82 A~~~~~~~~v~~Ll~~g-~~~~~~~~~--~~~~~---------------------------------~~~~~~~~g~t~L 125 (232)
T 2rfa_A 82 AVINQNVNLVRALLARG-ASVSARATG--SVFHY---------------------------------RPHNLIYYGEHPL 125 (232)
T ss_dssp HHHTTCHHHHHHHHHTT-CCTTCCCCS--GGGSC---------------------------------CTTCSCCCCSSHH
T ss_pred HHHcCCHHHHHHHHhCC-CCCCcccCC--cceee---------------------------------cccccccCCCCHH
Confidence 99999999999999998 556654432 11111 1456688999999
Q ss_pred HHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCC------CCCcccCCchHHH
Q 005790 349 HMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIF------GCQDYSARRAIAS 422 (677)
Q Consensus 349 h~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadi------n~~d~~G~T~L~~ 422 (677)
|+|+..+ +.++|++|++ .|+|+|.+|..|+||||+|+..++.+++..++++|+++|+++ +.+|..|+|||++
T Consensus 126 ~~A~~~~-~~~~v~~Ll~-~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~ 203 (232)
T 2rfa_A 126 SFAACVG-SEEIVRLLIE-HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKL 203 (232)
T ss_dssp HHHHHHT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHH
T ss_pred HHHHHcC-CHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHH
Confidence 9999988 9999999999 899999999999999999999999998888899999999998 6899999999999
Q ss_pred HHHHhCCCCCCCCccchhhHHHHHHcCCCCCCCC
Q 005790 423 HIKMLGNGSSPGTSFRISDTEIFLYTGIDVSSDG 456 (677)
Q Consensus 423 al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~~~ 456 (677)
|+.... .+++++|+++|++.....
T Consensus 204 A~~~g~----------~~~v~~Ll~~g~~~~~~~ 227 (232)
T 2rfa_A 204 AGVEGN----------IVMFQHLMQKRKHIAAAH 227 (232)
T ss_dssp HHHHTC----------HHHHHHHHHHHHHC----
T ss_pred HHHcCC----------HHHHHHHHhcCccchhhh
Confidence 998644 889999999999876544
No 42
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1e-33 Score=284.33 Aligned_cols=217 Identities=22% Similarity=0.228 Sum_probs=180.0
Q ss_pred hhhccchHHHHHHhcCCHHHHHHHHhcCC----CccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 005790 191 KWEMMNRAVHAAARGGNLKILKELLENCT----DVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPL 266 (677)
Q Consensus 191 ~~~~~~t~Lh~A~~~g~~eivk~LL~~ga----~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL 266 (677)
.+..|.||||+|+..|+.+++++|++.+. ++ +..+..|.||||+|+..|+.++|++|+++|++++..|..|.|||
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHh-hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 34567899999999999999999999876 45 78899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCch
Q 005790 267 HIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRT 346 (677)
Q Consensus 267 ~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~T 346 (677)
|+|+..|+.+++++|++.+.. ... ...++..+..|.|
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~-~~~------------------------------------------~~~~~~~~~~g~t 119 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTT-PHL------------------------------------------HSILKATNYNGHT 119 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTT-TSS------------------------------------------SCGGGCCCTTCCC
T ss_pred HHHHHcCCHHHHHHHHhcccc-hhH------------------------------------------HHHhhccCCCCCC
Confidence 999999999999999998842 110 1125667888999
Q ss_pred HHHHHHhCCCcHHHHHHHhhCCCCCccccCC-CCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHH
Q 005790 347 ALHMAITGNVHLELVQLLMSAPSINVNVRDN-DGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIK 425 (677)
Q Consensus 347 pLh~A~~~~~~~eiv~lLL~~~Gadin~~d~-~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~ 425 (677)
|||+|+..+ +.++|++|++ .|++++.++. .|.||||+|+..++.+ ++++|+++|++++.+|..|+|||++|+.
T Consensus 120 ~L~~A~~~~-~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~tpl~~A~~ 193 (236)
T 1ikn_D 120 CLHLASIHG-YLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPD----LVSLLLKCGADVNRVTYQGYSPYQLTWG 193 (236)
T ss_dssp HHHHHHHTT-CHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHTTTCCSCCCCTTCCCGGGGCTT
T ss_pred HHHHHHHcC-CHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCcccCCCCCHHHHHHc
Confidence 999999988 9999999999 8999999987 8999999999999877 6888999999999999999999988765
Q ss_pred HhCCCCCCCCccchhhHHHHHHcCCCCC--CCCCCCCCCCCCCC
Q 005790 426 MLGNGSSPGTSFRISDTEIFLYTGIDVS--SDGNANSGSGGMSS 467 (677)
Q Consensus 426 ~~~~~~~~~~~~~~~~v~~LL~~Gad~~--~~~~~g~t~~~~~~ 467 (677)
.. ..+++++|+++||+.. ..+..|.++....+
T Consensus 194 ~~----------~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 227 (236)
T 1ikn_D 194 RP----------STRIQQQLGQLTLENLQMLPESEDEESYDTES 227 (236)
T ss_dssp SS----------CHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-
T ss_pred cC----------chHHHHHHHHcchhhhhcCCccchHHHHhhhc
Confidence 32 2789999999999876 55555665554443
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=6.1e-32 Score=270.32 Aligned_cols=205 Identities=21% Similarity=0.202 Sum_probs=176.4
Q ss_pred cCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhc
Q 005790 26 YASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRA 105 (677)
Q Consensus 26 g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d 105 (677)
|.||||+||..|+.++|++||+. .|++++.+|
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~------------------------------------------------~g~~~~~~~ 34 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKF------------------------------------------------EGCEVHQRG 34 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTT------------------------------------------------TCSCTTCCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHh------------------------------------------------cCCCcccCC
Confidence 67999999999999999999985 244555678
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCcc----ccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchh
Q 005790 106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLV----FGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEE 181 (677)
Q Consensus 106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~----~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~ 181 (677)
..|.||||+|+..|+.++|++|++.++... +..+..|.||||+|+ ..|+.+++++|+++|++++..+.....
T Consensus 35 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~~~~--- 110 (232)
T 2rfa_A 35 AMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAV-INQNVNLVRALLARGASVSARATGSVF--- 110 (232)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCCSGGG---
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHH-HcCCHHHHHHHHhCCCCCCcccCCcce---
Confidence 889999999999999999999999997543 456778999999995 779999999999999999876543110
Q ss_pred hhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHH----HHHHhcCCCC--
Q 005790 182 HIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVV----KDLIASFDII-- 255 (677)
Q Consensus 182 ~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eiv----k~Ll~~ga~i-- 255 (677)
.......+..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++ ++|+++|+++
T Consensus 111 ---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~ 186 (232)
T 2rfa_A 111 ---HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHL 186 (232)
T ss_dssp ---SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSS
T ss_pred ---eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhh
Confidence 0111223345789999999999999999999999999 88999999999999999999988 9999999988
Q ss_pred ----CCCCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 005790 256 ----NSTDHQGNTPLHIAAYRGQPAVVEALILASP 286 (677)
Q Consensus 256 ----n~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~ 286 (677)
+..|..|.||||+|+..|+.+++++|+++++
T Consensus 187 ~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 187 KSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp CCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 5889999999999999999999999999884
No 44
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2e-33 Score=282.20 Aligned_cols=215 Identities=17% Similarity=0.210 Sum_probs=160.5
Q ss_pred hhcCCCChHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcc
Q 005790 103 IRAGYGGWLLYTAASAGDLGFVKQLLDKNPL---LVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGEL 179 (677)
Q Consensus 103 ~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~---~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~ 179 (677)
.+|..|.||||+|+..|+.++|++|++.+.. .++..+..|.||||+|| ..|+.+++++|+++|++++..+..
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~---- 77 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV-ITNQPEIAEALLGAGCDPELRDFR---- 77 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHH-HTTCHHHHHCCCSCCCCSCCCCTT----
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCCCcCCC----
Confidence 4577888999999999999999988887753 46777888889888885 668888888888888888765543
Q ss_pred hhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCc-----cccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 005790 180 EEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDV-----LTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254 (677)
Q Consensus 180 ~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~-----~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~ 254 (677)
|.||||+|+..|+.+++++|++.|++. .+..+..|.||||+|+..|+.+++++|+++|++
T Consensus 78 ---------------g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 142 (236)
T 1ikn_D 78 ---------------GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD 142 (236)
T ss_dssp ---------------CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred ---------------CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 368888888888888888888888642 356777888888888888888888888888888
Q ss_pred CCCCCC-CCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccch
Q 005790 255 INSTDH-QGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNM 333 (677)
Q Consensus 255 in~~d~-~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~ 333 (677)
++..+. .|.||||+|+..|+.+++++|+++| ++
T Consensus 143 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~--------------------------------------------- 176 (236)
T 1ikn_D 143 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-AD--------------------------------------------- 176 (236)
T ss_dssp TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CC---------------------------------------------
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CC---------------------------------------------
Confidence 888886 8888888888888888888888877 33
Q ss_pred hhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCcc--ccCCCCCcHHHHHhh
Q 005790 334 EDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVN--VRDNDGMTTLDLLKQ 388 (677)
Q Consensus 334 ~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin--~~d~~G~TpL~~A~~ 388 (677)
++.+|..|.||||+|+..+ +.+++++|++ .|++.. .++..|.||.+.+..
T Consensus 177 ---~~~~~~~g~tpl~~A~~~~-~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 177 ---VNRVTYQGYSPYQLTWGRP-STRIQQQLGQ-LTLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp ---SCCCCTTCCCGGGGCTTSS-CHHHHHHHHT-TSCGGGSSCCCCCTTTCCCCC--
T ss_pred ---CCcccCCCCCHHHHHHccC-chHHHHHHHH-cchhhhhcCCccchHHHHhhhcc
Confidence 3444556666666666666 7777777777 777665 556666666655443
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.98 E-value=2.1e-31 Score=260.21 Aligned_cols=191 Identities=25% Similarity=0.306 Sum_probs=175.7
Q ss_pred cchHHHHHHhcCCHHHHHHHHhcCC-CccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 005790 195 MNRAVHAAARGGNLKILKELLENCT-DVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRG 273 (677)
Q Consensus 195 ~~t~Lh~A~~~g~~eivk~LL~~ga-~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g 273 (677)
+.||||.|+..|+.++++.|+..+. ++ +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 5 EVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp CTTHHHHHHHTTCHHHHHHHHTCTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred cccHHHHHHHhccHHHHHHHHHcCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 4699999999999999999999998 65 888999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHh
Q 005790 274 QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAIT 353 (677)
Q Consensus 274 ~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~ 353 (677)
+.+++++|++.++.+++..+..|.||||+|+.. ++.+++++|++.+. ++++.+|..|.||||+|+.
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~----------~~~~~v~~Ll~~g~----~~~~~~~~~g~t~L~~A~~ 149 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEK----------GHIDNVKLLLEDGR----EDIDFQNDFGYTALIEAVG 149 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHT----------TCHHHHHHHHHHCC----CCTTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcHHHHHHHc----------CCHHHHHHHHHcCC----CCcCCCCCCCCCHHHHHHH
Confidence 999999999888789999999999999999994 55667777776653 3488999999999999999
Q ss_pred CCCc-----HHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcC
Q 005790 354 GNVH-----LELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAG 406 (677)
Q Consensus 354 ~~~~-----~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~G 406 (677)
.+ . .+++++|++ .|+|++.+|..|.||||+|+..++.+ ++++|+++|
T Consensus 150 ~~-~~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~G 201 (201)
T 3hra_A 150 LR-EGNQLYQDIVKLLME-NGADQSIKDNSGRTAMDYANQKGYTE----ISKILAQYN 201 (201)
T ss_dssp SS-CCSHHHHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHTCC
T ss_pred hc-cchhhHHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHh----HHHHHHhcC
Confidence 87 6 999999999 99999999999999999999999988 688888876
No 46
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=3e-32 Score=280.01 Aligned_cols=224 Identities=19% Similarity=0.166 Sum_probs=175.9
Q ss_pred ccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCch--
Q 005790 25 WYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSL-- 102 (677)
Q Consensus 25 ~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~-- 102 (677)
.|.||||+||..|+.++|+.||+.+++ .+.+++
T Consensus 12 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~---------------------------------------------~~~~~~~~ 46 (273)
T 2pnn_A 12 YDRRSIFDAVAQSNCQELESLLPFLQR---------------------------------------------SKKRLTDS 46 (273)
T ss_dssp CCHHHHHHHHHTTCSSTTTTHHHHHHH---------------------------------------------SCCCTTSG
T ss_pred ccchHHHHHHHcCCHHHHHHHHHHHhh---------------------------------------------cccccCCc
Confidence 477999999999999999999986532 223332
Q ss_pred --hhcCCCChHHHHHHHc---CCHHHHHHHHHcCCCc------c----ccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCC
Q 005790 103 --IRAGYGGWLLYTAASA---GDLGFVKQLLDKNPLL------V----FGEGEYGVTDIFYAAARSKNCDVFRLIYDFAV 167 (677)
Q Consensus 103 --~~d~~G~t~L~~Aa~~---g~~eivk~LL~~g~~~------~----~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Ga 167 (677)
..|..|.||||+||.. |+.++|++|++.|+.. + ...+..|.||||+|| ..|+.+++++|+++|+
T Consensus 47 ~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~-~~g~~~~v~~Ll~~ga 125 (273)
T 2pnn_A 47 EFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAI-ERRNMTLVTLLVENGA 125 (273)
T ss_dssp GGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHH-HTTCHHHHHHHHHTTC
T ss_pred ccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHH-HcCCHHHHHHHHHCCC
Confidence 3477899999999987 9999999999987531 1 225678999999995 7799999999999999
Q ss_pred CcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHh---cCCCccccCCCCCCcHHHHHHHhCC---
Q 005790 168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLE---NCTDVLTYRDKQGSTILHAAAGRGQ--- 241 (677)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~---~ga~~~~~~d~~g~TpL~~A~~~g~--- 241 (677)
+++..+..+.. ........+..|.||||+|+..|+.++|++|++ +|+++ +.+|..|+||||+|+..|+
T Consensus 126 ~~~~~~~~~~~-----~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~ 199 (273)
T 2pnn_A 126 DVQAAANGDFF-----KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTV 199 (273)
T ss_dssp CTTCCBCSGGG-----SSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCH
T ss_pred CcCcccccccc-----ccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcch
Confidence 99987653210 000111222357899999999999999999999 99999 8899999999999999998
Q ss_pred ------HHHHHHHHhcCCCCC-------CCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchh
Q 005790 242 ------VEVVKDLIASFDIIN-------STDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFL 300 (677)
Q Consensus 242 ------~eivk~Ll~~ga~in-------~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpL 300 (677)
.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|+++|+.+.......+.+|-
T Consensus 200 ~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 200 DNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH 271 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred hHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence 899999999999997 48999999999999999999999999999777777776666553
No 47
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=3.9e-31 Score=252.02 Aligned_cols=159 Identities=42% Similarity=0.570 Sum_probs=142.3
Q ss_pred hHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 005790 197 RAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPA 276 (677)
Q Consensus 197 t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~ 276 (677)
++|+.|++.|+.++|++||++|+++ +.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence 5799999999999999999999999 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCC
Q 005790 277 VVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNV 356 (677)
Q Consensus 277 iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~ 356 (677)
++++|++.|+ + +|.+|..|+||||+|+..+
T Consensus 85 ~v~~Ll~~ga-d------------------------------------------------vn~~d~~G~TpLh~A~~~g- 114 (169)
T 4gpm_A 85 VVKLLISKGA-D------------------------------------------------VNAKDSDGRTPLHHAAENG- 114 (169)
T ss_dssp HHHHHHHTTC-C------------------------------------------------TTCCCTTSCCHHHHHHHTT-
T ss_pred HHHHHHHCcC-C------------------------------------------------CCCCCCCCCCHHHHHHHcC-
Confidence 9999999883 2 5666888999999999988
Q ss_pred cHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCC
Q 005790 357 HLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGC 411 (677)
Q Consensus 357 ~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~ 411 (677)
+.++|++|++ .|+|++.+|..|+||||+|+..++.+ ++++|+++||+++.
T Consensus 115 ~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~----iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 115 HKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEE----VVKLLEKQGGWLEH 164 (169)
T ss_dssp CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHTC------
T ss_pred CHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCcCC
Confidence 9999999999 89999999999999999999999977 78999999999875
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=5.2e-32 Score=275.37 Aligned_cols=209 Identities=16% Similarity=0.107 Sum_probs=171.7
Q ss_pred ccCcHHHHHHHcCCHHHH----HHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCC
Q 005790 25 WYASPIDWAAANGHYDLV----RELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKN 100 (677)
Q Consensus 25 ~g~TpL~~Aa~~G~~diV----~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~ 100 (677)
||+||||+||..|+.++| ++|++.|++++..
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~--------------------------------------------- 35 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDS--------------------------------------------- 35 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG---------------------------------------------
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccc---------------------------------------------
Confidence 578999999999999855 5555555554310
Q ss_pred chhhcCCCChHHHHHHHc---CCHHHHHHHHHcCCCccc----------cCCCCCCCHHHHHHHhcCCHHHHHHHHhcCC
Q 005790 101 SLIRAGYGGWLLYTAASA---GDLGFVKQLLDKNPLLVF----------GEGEYGVTDIFYAAARSKNCDVFRLIYDFAV 167 (677)
Q Consensus 101 ~~~~d~~G~t~L~~Aa~~---g~~eivk~LL~~g~~~~~----------~~~~~g~tpL~~AA~~~g~~evv~lLl~~Ga 167 (677)
...+|..|.||||+|+.. |+.++|++|++.|+.... ..+..|.||||+|| ..|+.+++++|+++|+
T Consensus 36 ~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~ga 114 (256)
T 2etb_A 36 AYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAI-EKRSLQCVKLLVENGA 114 (256)
T ss_dssp GGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHH-HTTCHHHHHHHHHTTC
T ss_pred cccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHH-HcCCHHHHHHHHHcCC
Confidence 001678899999999999 999999999999764321 23467999999985 7799999999999999
Q ss_pred CcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHh---cCCCccccCCCCCCcHHHHHHH--hCCH
Q 005790 168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLE---NCTDVLTYRDKQGSTILHAAAG--RGQV 242 (677)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~---~ga~~~~~~d~~g~TpL~~A~~--~g~~ 242 (677)
+++..+..+.. .......+..|.||||+|+..|+.+++++|++ +|+++ +.+|..|+||||+|+. .++.
T Consensus 115 ~~~~~~~~~~~------~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~ 187 (256)
T 2etb_A 115 DVHLRACGRFF------QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSP 187 (256)
T ss_dssp CTTCCCCSGGG------SCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCH
T ss_pred CCCcccccccc------cccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCc
Confidence 99977654210 00111122236899999999999999999999 99999 8899999999999999 8888
Q ss_pred H-------HHHHHHhcCCCC-------CCCCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 005790 243 E-------VVKDLIASFDII-------NSTDHQGNTPLHIAAYRGQPAVVEALILASP 286 (677)
Q Consensus 243 e-------ivk~Ll~~ga~i-------n~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~ 286 (677)
+ ++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 188 ~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 188 ENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 8 999999999999 8999999999999999999999999999884
No 49
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=2.1e-30 Score=252.98 Aligned_cols=192 Identities=22% Similarity=0.243 Sum_probs=148.5
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790 106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE 185 (677)
Q Consensus 106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~ 185 (677)
.++.||||.|+..|+.+.|+.|+..++.+++..+..|.||||+|| ..|+.+++++|+++|++++..+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~---------- 71 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV-HNNDIEIAKALIDRGADINLQNSI---------- 71 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCCTTCCCTT----------
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCCCCCCC----------
Confidence 467888888888888888888888887777778888888888875 668888888888888887765543
Q ss_pred chhhhhhhccchHHHHHHhcCCHHHHHHHHhcC-CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcC-CCCCCCCCCCC
Q 005790 186 IPSVYKWEMMNRAVHAAARGGNLKILKELLENC-TDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASF-DIINSTDHQGN 263 (677)
Q Consensus 186 ~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~g-a~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~g-a~in~~d~~g~ 263 (677)
|.||||+|+..|+.+++++|++.+ .++ +..+..|.||||+|+..|+.+++++|+++| ++++..|..|.
T Consensus 72 ---------g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~ 141 (201)
T 3hra_A 72 ---------SDSPYLYAGAQGRTEILAYMLKHATPDL-NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGY 141 (201)
T ss_dssp ---------SCCHHHHHHHTTCHHHHHHHHHHSCCCT-TCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSC
T ss_pred ---------CCCHHHHHHHcCCHHHHHHHHhccCccc-ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCC
Confidence 357888888888888888888444 455 677888888888888888888888888888 78888888888
Q ss_pred cHHHHHHHcCC-----HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhh
Q 005790 264 TPLHIAAYRGQ-----PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIIN 338 (677)
Q Consensus 264 tpL~~A~~~g~-----~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in 338 (677)
||||+|+..++ .+++++|++.| ++ ++
T Consensus 142 t~L~~A~~~~~~~~~~~~~v~~Ll~~g-a~------------------------------------------------~~ 172 (201)
T 3hra_A 142 TALIEAVGLREGNQLYQDIVKLLMENG-AD------------------------------------------------QS 172 (201)
T ss_dssp CHHHHHHHSSCCSHHHHHHHHHHHHTT-CC------------------------------------------------TT
T ss_pred CHHHHHHHhccchhhHHHHHHHHHHCC-CC------------------------------------------------CC
Confidence 88888888777 77777777776 33 44
Q ss_pred ccCCCCchHHHHHHhCCCcHHHHHHHhhCCC
Q 005790 339 AKNNDGRTALHMAITGNVHLELVQLLMSAPS 369 (677)
Q Consensus 339 ~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~G 369 (677)
.+|..|.||||+|+..+ +.+++++|++ +|
T Consensus 173 ~~~~~g~t~l~~A~~~~-~~~~~~~Ll~-~G 201 (201)
T 3hra_A 173 IKDNSGRTAMDYANQKG-YTEISKILAQ-YN 201 (201)
T ss_dssp CCCTTSCCHHHHHHHHT-CHHHHHHHHT-CC
T ss_pred ccCCCCCCHHHHHHHcC-CHhHHHHHHh-cC
Confidence 55666777777777766 7777777776 44
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1.6e-31 Score=274.60 Aligned_cols=233 Identities=19% Similarity=0.209 Sum_probs=145.3
Q ss_pred CCCchhhcCCCChHHHHHHHcCCHHHHHHHHHc----CCCccc---cCCCCCCCHHHHHHHh--cCCHHHHHHHHhcCCC
Q 005790 98 GKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDK----NPLLVF---GEGEYGVTDIFYAAAR--SKNCDVFRLIYDFAVS 168 (677)
Q Consensus 98 g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~----g~~~~~---~~~~~g~tpL~~AA~~--~g~~evv~lLl~~Gad 168 (677)
++..+..|..|.||||+||..|+.++|+.|++. ++.... ..+..|.||||+||.. .|+.+++++|+++|++
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~ 82 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK 82 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence 455667889999999999999999999999974 332211 4578999999999642 4999999999999986
Q ss_pred cccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCC--------------CCCcHHH
Q 005790 169 PRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDK--------------QGSTILH 234 (677)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~--------------~g~TpL~ 234 (677)
++.... .........+..|.||||+|+..|+.++|++|+++|+++ +..+. .|.||||
T Consensus 83 ~~~~~~--------~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~ 153 (273)
T 2pnn_A 83 TDSLKQ--------FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLS 153 (273)
T ss_dssp TTCHHH--------HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHH
T ss_pred ccchhH--------HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHH
Confidence 542100 000000112234567777777777777777777777776 44554 5667777
Q ss_pred HHHHhCCHHHHHHHHh---cCCCCCCCCCCCCcHHHHHHHcCC---------HHHHHHHHHhCCCCccccCCCCCchhhh
Q 005790 235 AAAGRGQVEVVKDLIA---SFDIINSTDHQGNTPLHIAAYRGQ---------PAVVEALILASPSMISVKNTSGETFLHS 302 (677)
Q Consensus 235 ~A~~~g~~eivk~Ll~---~ga~in~~d~~g~tpL~~A~~~g~---------~~iv~~LL~~g~~~~~~~~~~g~tpLh~ 302 (677)
+|+..|+.++|++|++ +|++++.+|..|+||||+|+..|+ .+++++|++.| ++++...
T Consensus 154 ~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~~--------- 223 (273)
T 2pnn_A 154 LAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKLHPTL--------- 223 (273)
T ss_dssp HHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHCTTC---------
T ss_pred HHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhccccc---------
Confidence 7777777777777776 666777666667777777766665 45555555554 1111000
Q ss_pred hhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCC-CccccCCCCCc
Q 005790 303 AVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSI-NVNVRDNDGMT 381 (677)
Q Consensus 303 A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Ga-din~~d~~G~T 381 (677)
..++.+|..|.||||+|+..+ +.++|++||+ +|+ |+......+.+
T Consensus 224 --------------------------------~~~~~~d~~g~TpL~~A~~~g-~~~iv~~Ll~-~ga~dp~~~~~~~~~ 269 (273)
T 2pnn_A 224 --------------------------------KLEEITNRKGLTPLALAASSG-KIGVLAYILQ-REIHEPECRHAAAHH 269 (273)
T ss_dssp --------------------------------CGGGCCCTTSCCHHHHHHHTT-CHHHHHHHHH-HHTC-----------
T ss_pred --------------------------------ccccccCCCCCCHHHHHHHhC-hHHHHHHHHH-CCCCCchhhhhhhhh
Confidence 002457889999999999988 9999999999 888 88887777666
Q ss_pred HH
Q 005790 382 TL 383 (677)
Q Consensus 382 pL 383 (677)
|-
T Consensus 270 ~~ 271 (273)
T 2pnn_A 270 HH 271 (273)
T ss_dssp --
T ss_pred cc
Confidence 54
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=1.2e-30 Score=248.78 Aligned_cols=159 Identities=33% Similarity=0.419 Sum_probs=142.8
Q ss_pred cHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchH
Q 005790 231 TILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTY 310 (677)
Q Consensus 231 TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~ 310 (677)
++|+.||+.|+.++|++||++|+++|.+|..|+||||+|+..++.+++++|++.|. +
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~ga-d---------------------- 62 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA-D---------------------- 62 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-C----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhccc-c----------------------
Confidence 57999999999999999999999999999999999999999999999999998883 2
Q ss_pred HHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCC
Q 005790 311 AFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRP 390 (677)
Q Consensus 311 ~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~ 390 (677)
++.+|..|.||||+|+..+ +.++|++||+ .|+|+|.+|.+|+||||+|+..|
T Consensus 63 --------------------------~~~~d~~g~TpLh~A~~~g-~~~~v~~Ll~-~gadvn~~d~~G~TpLh~A~~~g 114 (169)
T 4gpm_A 63 --------------------------VNAKDSDGRTPLHHAAENG-HKEVVKLLIS-KGADVNAKDSDGRTPLHHAAENG 114 (169)
T ss_dssp --------------------------TTCCCTTSCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred --------------------------hhhhccCCCCHHHHHHHcC-CHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHcC
Confidence 5566888999999999988 9999999999 99999999999999999999999
Q ss_pred CCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCCC
Q 005790 391 QSASSDILIRHLISAGGIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVSS 454 (677)
Q Consensus 391 ~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~~ 454 (677)
+.+ ++++|+++|++++.+|..|+|||++|+.... .+++++|+++||+++-
T Consensus 115 ~~~----~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~----------~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 115 HKE----VVKLLISKGADVNTSDSDGRTPLDLAREHGN----------EEVVKLLEKQGGWLEH 164 (169)
T ss_dssp CHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----------HHHHHHHHTC------
T ss_pred CHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCC----------HHHHHHHHHCCCCcCC
Confidence 987 7899999999999999999999999988533 8899999999999864
No 52
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=2.6e-31 Score=270.17 Aligned_cols=195 Identities=20% Similarity=0.225 Sum_probs=171.4
Q ss_pred cchHHHHHHhcCCHH----HHHHHHhcCCCcccc----CCCCCCcHHHHHHHh---CCHHHHHHHHhcCCCCCCC-----
Q 005790 195 MNRAVHAAARGGNLK----ILKELLENCTDVLTY----RDKQGSTILHAAAGR---GQVEVVKDLIASFDIINST----- 258 (677)
Q Consensus 195 ~~t~Lh~A~~~g~~e----ivk~LL~~ga~~~~~----~d~~g~TpL~~A~~~---g~~eivk~Ll~~ga~in~~----- 258 (677)
|+||||.|+..|+.+ ++++|++.|+++ +. .|..|+||||+|+.. |+.++|++|+++|++++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 679999999999997 677888899998 55 899999999999999 9999999999999987643
Q ss_pred ------CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCC-------------CCchhhhhhhcCchHHHHHhhHHH
Q 005790 259 ------DHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTS-------------GETFLHSAVSGFQTYAFRRLDRQV 319 (677)
Q Consensus 259 ------d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~-------------g~tpLh~A~~~~~~~~~~~L~~~~ 319 (677)
|..|.||||+|+..|+.+++++|+++| ++++..+.. |.||||+|+.. ++.
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~----------~~~ 149 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG-ADVHLRACGRFFQKHQGTCFYFGELPLSLAACT----------KQW 149 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT----------TCH
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccccccccccccccccCCCCHHHHHHHc----------CCH
Confidence 367999999999999999999999998 678888876 99999999994 556
Q ss_pred HHHHHHHcccccchhhhhhccCCCCchHHHHHHh--CCCcHH-------HHHHHhhCCCCCc-------cccCCCCCcHH
Q 005790 320 KLMKQLASGQIFNMEDIINAKNNDGRTALHMAIT--GNVHLE-------LVQLLMSAPSINV-------NVRDNDGMTTL 383 (677)
Q Consensus 320 eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~--~~~~~e-------iv~lLL~~~Gadi-------n~~d~~G~TpL 383 (677)
+++++|++.. ..++++|.+|..|.||||+|+. .+ +.+ ++++|++ .|+++ +.+|..|+|||
T Consensus 150 ~~v~~Ll~~~--~~ga~~n~~d~~g~TpLh~A~~~~~~-~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL 225 (256)
T 2etb_A 150 DVVTYLLENP--HQPASLEATDSLGNTVLHALVMIADN-SPENSALVIHMYDGLLQ-MGARLCPTVQLEEISNHQGLTPL 225 (256)
T ss_dssp HHHHHHHHCS--SCCCCTTCCCTTSCCHHHHHHHHCCS-CHHHHHHHHHHHHHHHH-HHHHHSTTCCGGGCCCTTSCCHH
T ss_pred HHHHHHHhcc--ccCCCcCccCCCCCCHHHHHHHcccC-CchhhHHHHHHHHHHHH-cCCCcccccccccccCCCCCCHH
Confidence 7788887720 0235699999999999999998 66 888 9999999 99999 99999999999
Q ss_pred HHHhhCCCCchHHHHHHHHHHcCCCC
Q 005790 384 DLLKQRPQSASSDILIRHLISAGGIF 409 (677)
Q Consensus 384 ~~A~~~~~~~~~~~lv~~Ll~~Gadi 409 (677)
|+|+..|+.+ ++++|+++|++.
T Consensus 226 ~~A~~~g~~~----~v~~Ll~~g~~~ 247 (256)
T 2etb_A 226 KLAAKEGKIE----IFRHILQREFSG 247 (256)
T ss_dssp HHHHHTTCHH----HHHHHHHHHHHH
T ss_pred HHHHHhCCHH----HHHHHHhCCCCC
Confidence 9999999988 688888888654
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.6e-30 Score=264.85 Aligned_cols=210 Identities=18% Similarity=0.103 Sum_probs=170.5
Q ss_pred ccCcHHHHHHHcCCHHHHHHHHH----hcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCC
Q 005790 25 WYASPIDWAAANGHYDLVRELLR----IDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKN 100 (677)
Q Consensus 25 ~g~TpL~~Aa~~G~~diV~~LL~----~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~ 100 (677)
+++||||.||+.|+.++|+.|++ .|++++..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~--------------------------------------------- 38 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE--------------------------------------------- 38 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG---------------------------------------------
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchh---------------------------------------------
Confidence 47799999999999996665555 66665422
Q ss_pred chhhcCCCChHHHHHH---HcCCHHHHHHHHHcCCC----------ccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCC
Q 005790 101 SLIRAGYGGWLLYTAA---SAGDLGFVKQLLDKNPL----------LVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAV 167 (677)
Q Consensus 101 ~~~~d~~G~t~L~~Aa---~~g~~eivk~LL~~g~~----------~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Ga 167 (677)
....+..|.||||+|+ ..|+.++|++|++.++. .....+..|.||||+|| ..|+.++|++|+++|+
T Consensus 39 ~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 39 EFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAI-ERRCKHYVELLVEKGA 117 (260)
T ss_dssp GGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHH-HTTCHHHHHHHHHTTC
T ss_pred hhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHH-HcCCHHHHHHHHhCCC
Confidence 0123467999999999 67999999999998742 23445568999999985 7799999999999999
Q ss_pred CcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHh---cCCCccccCCCCCCcHHHHHHHhCC---
Q 005790 168 SPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLE---NCTDVLTYRDKQGSTILHAAAGRGQ--- 241 (677)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~---~ga~~~~~~d~~g~TpL~~A~~~g~--- 241 (677)
+++..+...... .......+..|.||||+|+..|+.++|++|++ +|+++ +.+|..|+||||+|+..++
T Consensus 118 ~~~~~~~~~~~~-----~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~ 191 (260)
T 3jxi_A 118 DVHAQARGRFFQ-----PKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTR 191 (260)
T ss_dssp CTTCCCEECCCS-----SSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSH
T ss_pred CcCccccccccC-----cccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCch
Confidence 999776421100 00011122346899999999999999999999 99999 8899999999999999888
Q ss_pred ------HHHHHHHHhcCCCC-------CCCCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 005790 242 ------VEVVKDLIASFDII-------NSTDHQGNTPLHIAAYRGQPAVVEALILASP 286 (677)
Q Consensus 242 ------~eivk~Ll~~ga~i-------n~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~ 286 (677)
.+++++|+++|+++ +..|..|.||||+|+..|+.+++++||++|+
T Consensus 192 ~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 192 ENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI 249 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence 79999999999998 6799999999999999999999999999984
No 54
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=5.4e-31 Score=282.73 Aligned_cols=301 Identities=13% Similarity=-0.009 Sum_probs=203.7
Q ss_pred HHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHh-hchHHHHHHHHhhhhcCCCCchhhcCCCChH
Q 005790 33 AAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAK-CRSKVARKLFLECKSKNGKNSLIRAGYGGWL 111 (677)
Q Consensus 33 Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~-~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~ 111 (677)
+...+..+++..++....+++.. ...+.++++.. .+...+.++|+. .|.+ +.||
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~ll~~~~a~~~~~~~~~~~~l~~----~g~~-------~~T~ 95 (376)
T 2aja_A 41 LMTLSYKEAIHIFLPGTKNMEQV--------------RQLLCLYYAHYNRNAKQLWSDAHK----KGIK-------SEVI 95 (376)
T ss_dssp HHHSCHHHHHHHCCCCSSHHHHH--------------HHHHHHHHHHTTTTCTTHHHHHHH----HTCC-------HHHH
T ss_pred hhhccHHHHHHHHhcCCCCHHHH--------------HHHHHHHHHHhcCCCHHHHHHHHH----cCCC-------cCCH
Confidence 33466678888888766554321 12344555555 456677777776 4443 4599
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhh
Q 005790 112 LYTAASAGDLGFVKQLLDKNPLLV--FGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSV 189 (677)
Q Consensus 112 L~~Aa~~g~~eivk~LL~~g~~~~--~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~ 189 (677)
||+|+..|+.++|++|++.++... ...+..|.||||+|| ..|+.++|++|+++|+++...+....
T Consensus 96 Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa-~~G~~eiv~~Ll~~gad~~~~~i~~~------------ 162 (376)
T 2aja_A 96 CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA-ENGHLHVLNRLCELAPTEIMAMIQAE------------ 162 (376)
T ss_dssp HHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH-HTTCHHHHHHHHHSCTTTHHHHHSHH------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH-HcCCHHHHHHHHhCCCCccccccCCC------------
Confidence 999999999999999999987321 133456788999985 77999999999999987443222110
Q ss_pred hhhhccchHHHHHHhcCCHHHHHHHHhcCCCcccc--CCCCCCcHHHHHH-HhCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 005790 190 YKWEMMNRAVHAAARGGNLKILKELLENCTDVLTY--RDKQGSTILHAAA-GRGQVEVVKDLIASFDIINSTDHQGNTPL 266 (677)
Q Consensus 190 ~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~--~d~~g~TpL~~A~-~~g~~eivk~Ll~~ga~in~~d~~g~tpL 266 (677)
..||||+|+..|+.++|++|+++|+++ +. .|..|.||||+|+ ..|+.++|++|+++|++ |.|||
T Consensus 163 -----~~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL 229 (376)
T 2aja_A 163 -----NYHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAE 229 (376)
T ss_dssp -----HHHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHH
T ss_pred -----CCCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHH
Confidence 058999999999999999999999987 44 6778999999999 99999999999998753 78999
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHH------------HHh-----hHHHHHHHHHHccc
Q 005790 267 HIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAF------------RRL-----DRQVKLMKQLASGQ 329 (677)
Q Consensus 267 ~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~------------~~L-----~~~~eiv~~Ll~~~ 329 (677)
|+|+..|+.+++++|++.| ++++..+ ++++.|+..|+.+++ +.+ ....+.+++|++..
T Consensus 230 ~~Aa~~g~~evv~lL~~~g-a~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~ 304 (376)
T 2aja_A 230 IHEFEYGEKYVNPFIARHV-NRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 304 (376)
T ss_dssp HCTTTTTTTTHHHHHHHHH-HHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTST
T ss_pred HHHHHCCCHHHHHHHHhcC-ccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhCh
Confidence 9999999999999999988 4444433 477788777765432 111 22355667776644
Q ss_pred ccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCch
Q 005790 330 IFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSAS 394 (677)
Q Consensus 330 ~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~ 394 (677)
.+..-.........+.||||+|+..| +.++|++|++ .| ..++..|+|++.+|...|..+.
T Consensus 305 ~vk~l~~~g~~~n~~~~~L~~A~~~g-~~e~v~lLl~-~~---~v~~~~~~~~~~~~~~~~~~~~ 364 (376)
T 2aja_A 305 GIKALAPTATIPGDANELLRLALRLG-NQGACALLLS-IP---SVLALTKANNYYINETGGRLDL 364 (376)
T ss_dssp TTGGGSSCCSSTTCCCHHHHHHHHHT-CTTHHHHHTT-SH---HHHHSCC---------------
T ss_pred hhhhhhccCCCCCCccHHHHHHHHcC-cHHHHHHHHc-Ch---HHHHHHHHhccccccccccccH
Confidence 32221111222345678999999988 9999999998 44 6677889999999999998874
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=4.1e-29 Score=257.60 Aligned_cols=194 Identities=22% Similarity=0.196 Sum_probs=170.1
Q ss_pred ccccHHHHHhhchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHH
Q 005790 71 DEEQFDDVAKCRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAA 150 (677)
Q Consensus 71 ~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA 150 (677)
..+++|.|+..++...++.+++... ...++..|..|.||||+||..|+.++|++|++.|+.+++..+..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~--~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~ 153 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLL--DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA 153 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHH--HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHH--hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence 3456677777777777777766211 12267789999999999999999999999999998888899999999999986
Q ss_pred H----hcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCC
Q 005790 151 A----RSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRD 226 (677)
Q Consensus 151 ~----~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d 226 (677)
. ..++.+++++|++.|++++..+.. |.||||+|+..|+.++|++|+++|+++ +.+|
T Consensus 154 ~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~-------------------g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d 213 (276)
T 4hbd_A 154 LATLKTQDDIETVLQLFRLGNINAKASQA-------------------GQTALMLAVSHGRVDVVKALLACEADV-NVQD 213 (276)
T ss_dssp GCCCCSHHHHHHHHHHHHHSCTTCCCTTT-------------------CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC
T ss_pred HHHhhhhhhHHHHHHHHHcCCCccccCCC-------------------CCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCC
Confidence 3 458899999999999877654433 479999999999999999999999999 8899
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 005790 227 KQGSTILHAAAGRGQVEVVKDLIA-SFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASP 286 (677)
Q Consensus 227 ~~g~TpL~~A~~~g~~eivk~Ll~-~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~ 286 (677)
..|+||||+|+..|+.++|++|++ .|++++..|..|.||||+|+..|+.+++++|+++..
T Consensus 214 ~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 214 DDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 999999999999999999999999 899999999999999999999999999999999863
No 56
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=9.3e-30 Score=259.19 Aligned_cols=197 Identities=20% Similarity=0.241 Sum_probs=166.8
Q ss_pred ccchHHHHHHhcCCHHH----HHHHHhcCCCccccCC----CCCCcHHHHHH---HhCCHHHHHHHHhcCCC--------
Q 005790 194 MMNRAVHAAARGGNLKI----LKELLENCTDVLTYRD----KQGSTILHAAA---GRGQVEVVKDLIASFDI-------- 254 (677)
Q Consensus 194 ~~~t~Lh~A~~~g~~ei----vk~LL~~ga~~~~~~d----~~g~TpL~~A~---~~g~~eivk~Ll~~ga~-------- 254 (677)
.++++||.|+..|+.+. +++|++.|+++ +..+ ..|.||||+|+ ..|+.++|++|+++|++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 82 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-chhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence 35799999999999995 55555599988 4343 77999999999 77999999999998854
Q ss_pred ---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccC--------------CCCCchhhhhhhcCchHHHHHhhH
Q 005790 255 ---INSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKN--------------TSGETFLHSAVSGFQTYAFRRLDR 317 (677)
Q Consensus 255 ---in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~--------------~~g~tpLh~A~~~~~~~~~~~L~~ 317 (677)
++..|..|.||||+|+..|+.++|++|++.| ++++..+ ..|.||||+|+.. +
T Consensus 83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~----------g 151 (260)
T 3jxi_A 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG-ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACT----------N 151 (260)
T ss_dssp TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHT----------T
T ss_pred cccccccccCCCCHHHHHHHcCCHHHHHHHHhCC-CCcCccccccccCcccccccccCCCCHHHHHHHc----------C
Confidence 4455568999999999999999999999998 6788888 6899999999994 5
Q ss_pred HHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCc---------HHHHHHHhhCCCCCc-------cccCCCCCc
Q 005790 318 QVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVH---------LELVQLLMSAPSINV-------NVRDNDGMT 381 (677)
Q Consensus 318 ~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~---------~eiv~lLL~~~Gadi-------n~~d~~G~T 381 (677)
+.+++++|++.+ ..+++++.+|..|.||||+|+..+ + .+++++|++ .|+++ +.+|..|+|
T Consensus 152 ~~~~v~~Ll~~~--~~ga~~~~~d~~g~TpLh~A~~~~-~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d~~g~t 227 (260)
T 3jxi_A 152 QPHIVHYLTENG--HKQADLRRQDSRGNTVLHALVAIA-DNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLS 227 (260)
T ss_dssp CHHHHHHHHHCS--SCCCCTTCCCTTSCCHHHHHHHHC-CSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCC
T ss_pred CHHHHHHHHhcc--ccCCCCcccCCCCCcHHHHHHHhc-cCchhHHHHHHHHHHHHHH-hCcccccccchhhcccCCCCC
Confidence 567777887721 023569999999999999999866 5 799999999 99999 779999999
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHcCCCCC
Q 005790 382 TLDLLKQRPQSASSDILIRHLISAGGIFG 410 (677)
Q Consensus 382 pL~~A~~~~~~~~~~~lv~~Ll~~Gadin 410 (677)
|||+|+..|+.+ ++++|+++|++..
T Consensus 228 pL~~A~~~g~~~----~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 228 PLMMAAKTGKIG----IFQHIIRREIADA 252 (260)
T ss_dssp HHHHHHHTTCHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHH----HHHHHHHhCCCcc
Confidence 999999999988 6888999887654
No 57
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.2e-28 Score=234.72 Aligned_cols=169 Identities=22% Similarity=0.242 Sum_probs=148.2
Q ss_pred chHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH
Q 005790 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQP 275 (677)
Q Consensus 196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~ 275 (677)
.+|||.|+..|+.++++.|++.+.+..+..+..|+||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT 82 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence 58999999999999999999999986588899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCC
Q 005790 276 AVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGN 355 (677)
Q Consensus 276 ~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~ 355 (677)
+++++|++.+. + ++.+|..|.||||+|+..+
T Consensus 83 ~~v~~Ll~~g~-~------------------------------------------------~~~~~~~g~t~L~~A~~~~ 113 (172)
T 3v30_A 83 DIVGLLLERDV-D------------------------------------------------INIYDWNGGTPLLYAVRGN 113 (172)
T ss_dssp HHHHHHHTTTC-C------------------------------------------------TTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCC-C------------------------------------------------CCCCCCCCCCHHHHHHHcC
Confidence 99999998873 2 5556788899999999988
Q ss_pred CcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCch
Q 005790 356 VHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRA 419 (677)
Q Consensus 356 ~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~ 419 (677)
+.+++++|++ .|++++.+|..|.||||+|+..++.+ ++++|+++|+++...+..|.||
T Consensus 114 -~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~----~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 114 -HVKCVEALLA-RGADLTTEADSGYTPMDLAVALGYRK----VQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp -CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHHHHHHHSCC-------
T ss_pred -CHHHHHHHHH-cCCCccccCCCCCCHHHHHHHhCcHH----HHHHHHHHHHHHhcccCCCCCC
Confidence 9999999999 89999999999999999999999977 6888889999998888888876
No 58
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=4.7e-28 Score=230.60 Aligned_cols=170 Identities=24% Similarity=0.282 Sum_probs=150.7
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcch
Q 005790 108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP 187 (677)
Q Consensus 108 G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~ 187 (677)
+.||||+|+..|+.++|++|++.++..++..+..|.||||+|| ..|+.+++++|+++|++++..+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~------------ 68 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWAS-AFGEIETVRFLLEWGADPHILAKE------------ 68 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHH-HTTCHHHHHHHHHHTCCTTCCCTT------------
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCchhhccc------------
Confidence 4689999999999999999999998778889999999999985 779999999999999998876554
Q ss_pred hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 005790 188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLH 267 (677)
Q Consensus 188 ~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~ 267 (677)
|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||
T Consensus 69 -------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~ 140 (172)
T 3v30_A 69 -------RESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMD 140 (172)
T ss_dssp -------CCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred -------CCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence 368999999999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHhCCCCccccCCCCCch
Q 005790 268 IAAYRGQPAVVEALILASPSMISVKNTSGETF 299 (677)
Q Consensus 268 ~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tp 299 (677)
+|+..|+.+++++|++++ .+....+..|.||
T Consensus 141 ~A~~~~~~~~~~~L~~~~-~~~~~~~~~~~~p 171 (172)
T 3v30_A 141 LAVALGYRKVQQVIENHI-LKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHTCHHHHHHHHHHH-HHHSCC-------
T ss_pred HHHHhCcHHHHHHHHHHH-HHHhcccCCCCCC
Confidence 999999999999999998 4566667666665
No 59
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.5e-29 Score=253.60 Aligned_cols=199 Identities=23% Similarity=0.173 Sum_probs=167.2
Q ss_pred HHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHH
Q 005790 159 FRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAG 238 (677)
Q Consensus 159 v~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~ 238 (677)
++.|+++|++++..+..+.. +.||||+|+..|+.++|++|++.|+++ +..|..|+||||+|+.
T Consensus 1 v~~ll~~~~~~~~~~~~~~~----------------~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~ 63 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLN----------------PLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAIC 63 (229)
T ss_dssp ---------CCCCCCCTTSC----------------HHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHH
T ss_pred CeehhccCCCCccccccccc----------------hhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHH
Confidence 56789999998876654432 469999999999999999999999998 7899999999999999
Q ss_pred hCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccC-CCCCchhhhh--hhcCchHHHHHh
Q 005790 239 RGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKN-TSGETFLHSA--VSGFQTYAFRRL 315 (677)
Q Consensus 239 ~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~-~~g~tpLh~A--~~~~~~~~~~~L 315 (677)
.|+.++|++|+++|++++..|..|+||||+|+..|+.+++++|++.| ++++..+ ..|.||||+| +.
T Consensus 64 ~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~~A~a~~---------- 132 (229)
T 2vge_A 64 GANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG-AAIFATTLSDGATAFEKCDPYR---------- 132 (229)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCSSTTCCTGGGCCTTS----------
T ss_pred cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHHh----------
Confidence 99999999999999999999999999999999999999999999998 6677775 6999999999 77
Q ss_pred hHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCC--ccccCCCCCcHHHHHhhCCCCc
Q 005790 316 DRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSIN--VNVRDNDGMTTLDLLKQRPQSA 393 (677)
Q Consensus 316 ~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gad--in~~d~~G~TpL~~A~~~~~~~ 393 (677)
.++.+++++|++. +++++.+|..|.|||+.++..+ .+++|++ .|++ ++.+|..|+||||+|+..|+.+
T Consensus 133 ~~~~~~v~~Ll~~-----ga~~~~~~~~~~~~l~~~~~~~----~~~~ll~-~ga~~~~~~~d~~G~TpL~~A~~~g~~~ 202 (229)
T 2vge_A 133 EGYADCATYLADV-----EQSMGLMNSGAVYALWDYSAEF----GDELSFR-EGESVTVLRRDGPEETDWWWAALHGQEG 202 (229)
T ss_dssp TTHHHHHHHHHHH-----HHHTTTSGGGEEEESSCBCCSS----TTBCCBC-TTCEEEEEESSCTTCSSEEEEEETTEEE
T ss_pred cChHHHHHHHHHc-----CCCcccccCCchHHHHHHhhcc----ccccCcc-ccccccccccCCCcccHHHHHHHcCCcc
Confidence 5667777777665 4679999999999999766544 2368888 8999 7788999999999999999998
Q ss_pred hH
Q 005790 394 SS 395 (677)
Q Consensus 394 ~~ 395 (677)
++
T Consensus 203 ~v 204 (229)
T 2vge_A 203 YV 204 (229)
T ss_dssp EE
T ss_pred ee
Confidence 63
No 60
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=1.3e-27 Score=231.95 Aligned_cols=163 Identities=19% Similarity=0.153 Sum_probs=151.4
Q ss_pred chhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcch
Q 005790 101 SLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELE 180 (677)
Q Consensus 101 ~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~ 180 (677)
++.+|..|.||||+||..|+.++|++|++.++ +++..+..|.||||+|+ ..|+.+++++|+++|++++..+..
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~----- 100 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFD-KLEDKDIEGSTALIWAV-KNNRLGIAEKLLSKGSNVNTKDFS----- 100 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHC-CTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHHTCCTTCCCTT-----
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcc-ccccccccCccHHHHHH-HcCCHHHHHHHHHCCCCCCCCCCC-----
Confidence 45678899999999999999999999999987 56778889999999985 779999999999999998876544
Q ss_pred hhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCC
Q 005790 181 EHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDH 260 (677)
Q Consensus 181 ~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~ 260 (677)
|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++..|.
T Consensus 101 --------------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 165 (192)
T 2rfm_A 101 --------------GKTPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165 (192)
T ss_dssp --------------SCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT
T ss_pred --------------CCcHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence 479999999999999999999999999 78999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhC
Q 005790 261 QGNTPLHIAAYRGQPAVVEALILAS 285 (677)
Q Consensus 261 ~g~tpL~~A~~~g~~~iv~~LL~~g 285 (677)
.|.||||+|+..|+.+++++|++.+
T Consensus 166 ~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 166 TGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp TSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 9999999999999999999999875
No 61
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=4.7e-28 Score=249.67 Aligned_cols=193 Identities=19% Similarity=0.261 Sum_probs=125.9
Q ss_pred chHHHHHHhcCCHHHHHHHHhcCCC--ccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCC-CCCCCCCCCCcHHHHHHHc
Q 005790 196 NRAVHAAARGGNLKILKELLENCTD--VLTYRDKQGSTILHAAAGRGQVEVVKDLIASFD-IINSTDHQGNTPLHIAAYR 272 (677)
Q Consensus 196 ~t~Lh~A~~~g~~eivk~LL~~ga~--~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga-~in~~d~~g~tpL~~A~~~ 272 (677)
.+++|.|+..|+.+.++.+++.+.+ + +..|..|+||||+|+..|+.++|++|+++|+ +++..+..|.||||+|+..
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~-n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVV-NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHH-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcC-cCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 4455555555555555555554443 2 4455555555555555555555555555554 5555555555555555511
Q ss_pred CCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHH
Q 005790 273 GQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI 352 (677)
Q Consensus 273 g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~ 352 (677)
.. .. .+..+++++|++.+ ++++..+..|.||||+|+
T Consensus 156 ~~-----------------------------~~----------~~~~~~v~~Ll~~g-----~~~~~~~~~g~tpLh~A~ 191 (276)
T 4hbd_A 156 TL-----------------------------KT----------QDDIETVLQLFRLG-----NINAKASQAGQTALMLAV 191 (276)
T ss_dssp CC-----------------------------CS----------HHHHHHHHHHHHHS-----CTTCCCTTTCCCHHHHHH
T ss_pred Hh-----------------------------hh----------hhhHHHHHHHHHcC-----CCccccCCCCCCHHHHHH
Confidence 00 01 23444444444433 224556677888888888
Q ss_pred hCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHH-cCCCCCCCcccCCchHHHHHHHhCCCC
Q 005790 353 TGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLIS-AGGIFGCQDYSARRAIASHIKMLGNGS 431 (677)
Q Consensus 353 ~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~-~Gadin~~d~~G~T~L~~al~~~~~~~ 431 (677)
..+ +.++|++|++ .|+|+|.+|..|+||||+|+..|+.+ ++++|++ .|++++.+|..|+|||++|+....
T Consensus 192 ~~g-~~~~v~~Ll~-~gad~n~~d~~G~TpLh~A~~~g~~~----iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~--- 262 (276)
T 4hbd_A 192 SHG-RVDVVKALLA-CEADVNVQDDDGSTALMCACEHGHKE----IAGLLLAVPSCDISLTDRDGSTALMVALDAGQ--- 262 (276)
T ss_dssp HTT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC---
T ss_pred HcC-CHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHCCCHH----HHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC---
Confidence 877 8888888888 78888888888888888888888866 6788887 788888888888888888887533
Q ss_pred CCCCccchhhHHHHHHcC
Q 005790 432 SPGTSFRISDTEIFLYTG 449 (677)
Q Consensus 432 ~~~~~~~~~~v~~LL~~G 449 (677)
.+++++|++++
T Consensus 263 -------~~iv~~Ll~~~ 273 (276)
T 4hbd_A 263 -------SEIASMLYSRM 273 (276)
T ss_dssp -------HHHHHHHHHHC
T ss_pred -------HHHHHHHHhcc
Confidence 77888888764
No 62
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=1.3e-27 Score=225.02 Aligned_cols=156 Identities=25% Similarity=0.359 Sum_probs=135.7
Q ss_pred chHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH
Q 005790 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQP 275 (677)
Q Consensus 196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~ 275 (677)
.||||.|+..|+.+++++|+++|+++ +..+..|.||||+|+. |+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 83 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL 83 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred hhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 58999999999999999999999998 7789999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCC
Q 005790 276 AVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGN 355 (677)
Q Consensus 276 ~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~ 355 (677)
+++++|++.| .+ ++.+|..|.||||+|+..+
T Consensus 84 ~~v~~Ll~~g-~~------------------------------------------------~~~~~~~g~t~L~~A~~~~ 114 (162)
T 1ihb_A 84 DTLQTLLEFQ-AD------------------------------------------------VNIEDNEGNLPLHLAAKEG 114 (162)
T ss_dssp HHHHHHHHTT-CC------------------------------------------------TTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcC-CC------------------------------------------------CCCcCCCCCCHHHHHHHcC
Confidence 9999999887 33 4555677888888888877
Q ss_pred CcHHHHHHHhhCCCCC-ccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCC
Q 005790 356 VHLELVQLLMSAPSIN-VNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGI 408 (677)
Q Consensus 356 ~~~eiv~lLL~~~Gad-in~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gad 408 (677)
+.+++++|++ .|++ ++.+|..|.||||+|+..++.+ ++++|+++|||
T Consensus 115 -~~~~v~~Ll~-~g~~~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~GAd 162 (162)
T 1ihb_A 115 -HLRVVEFLVK-HTASNVGHRNHKGDTACDLARLYGRNE----VVSLMQANGAG 162 (162)
T ss_dssp -CHHHHHHHHH-HSCCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTC--
T ss_pred -CHHHHHHHHH-ccCCCCCCcCCCCCcHHHHHHHcCCHH----HHHHHHHhCCC
Confidence 8888888888 7877 5888888888888888888876 68888888875
No 63
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=3.9e-27 Score=223.93 Aligned_cols=157 Identities=33% Similarity=0.452 Sum_probs=140.7
Q ss_pred ccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 005790 194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRG 273 (677)
Q Consensus 194 ~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g 273 (677)
.+.++|+.|+..|+.++|++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred cccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 3468999999999999999999999998 778999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHh
Q 005790 274 QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAIT 353 (677)
Q Consensus 274 ~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~ 353 (677)
+.+++++|++.|. + ++.+|..|.||||+|+.
T Consensus 92 ~~~~~~~Ll~~g~-~------------------------------------------------~~~~~~~g~t~L~~A~~ 122 (169)
T 2y1l_E 92 HLEIVEVLLKNGA-D------------------------------------------------VNANDMEGHTPLHLAAM 122 (169)
T ss_dssp CHHHHHHHHHTTC-C------------------------------------------------TTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHHHcCC-C------------------------------------------------CCCCCCCCCCHHHHHHH
Confidence 9999999999873 2 45567788899999998
Q ss_pred CCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcC
Q 005790 354 GNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAG 406 (677)
Q Consensus 354 ~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~G 406 (677)
.+ +.+++++|++ .|++++.+|..|.|||++|+..++.+ ++++|++.|
T Consensus 123 ~~-~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~----~~~~L~~~G 169 (169)
T 2y1l_E 123 FG-HLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNED----LAEILQKLN 169 (169)
T ss_dssp TT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHTC-
T ss_pred cC-CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHH----HHHHHHHcC
Confidence 88 9999999999 89999999999999999999999877 677777765
No 64
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=2e-30 Score=278.31 Aligned_cols=286 Identities=18% Similarity=0.118 Sum_probs=195.3
Q ss_pred hchHHHHHHHHhhhhcCCCCchhhcCCCChHHHHHHH-cCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHH
Q 005790 81 CRSKVARKLFLECKSKNGKNSLIRAGYGGWLLYTAAS-AGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVF 159 (677)
Q Consensus 81 ~~~~~v~~lLl~~~~~~g~~~~~~d~~G~t~L~~Aa~-~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv 159 (677)
.+..++..+++. ...+++. ..+.+++++|.. .++.+++++|++++.. +.||||+|| ..|+.++|
T Consensus 44 ~~~~~~~~~~~~----~~~~~~~--~~~ll~~~~a~~~~~~~~~~~~l~~~g~~--------~~T~Lh~Aa-~~G~~e~v 108 (376)
T 2aja_A 44 LSYKEAIHIFLP----GTKNMEQ--VRQLLCLYYAHYNRNAKQLWSDAHKKGIK--------SEVICFVAA-ITGCSSAL 108 (376)
T ss_dssp SCHHHHHHHCCC----CSSHHHH--HHHHHHHHHHHTTTTCTTHHHHHHHHTCC--------HHHHHHHHH-HHCCHHHH
T ss_pred ccHHHHHHHHhc----CCCCHHH--HHHHHHHHHHHhcCCCHHHHHHHHHcCCC--------cCCHHHHHH-HcCCHHHH
Confidence 344555555554 3333332 234578888887 5889999999998752 459999996 77999999
Q ss_pred HHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCcc--ccCCCCCCcHHHHHH
Q 005790 160 RLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVL--TYRDKQGSTILHAAA 237 (677)
Q Consensus 160 ~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~--~~~d~~g~TpL~~A~ 237 (677)
++|+++|+.....+... ..+.||||+|+..|+.++|++|+++|+++. +..+.+ .||||+|+
T Consensus 109 ~~Ll~~ga~~~~~~~~~----------------~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa 171 (376)
T 2aja_A 109 DTLCLLLTSDEIVKVIQ----------------AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA 171 (376)
T ss_dssp HHHTTC--CCSSCC--C----------------HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred HHHHHcCCcHHHHHHhc----------------cCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence 99999998332211110 113589999999999999999999997521 222223 89999999
Q ss_pred HhCCHHHHHHHHhcCCCCCC--CCCCCCcHHHHHH-HcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHH
Q 005790 238 GRGQVEVVKDLIASFDIINS--TDHQGNTPLHIAA-YRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRR 314 (677)
Q Consensus 238 ~~g~~eivk~Ll~~ga~in~--~d~~g~tpL~~A~-~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~ 314 (677)
..|+.++|++|+++|++++. .|..|.||||+|+ ..|+.++|++|++.|. .|.||||+|+..|+.++++.
T Consensus 172 ~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~l 243 (376)
T 2aja_A 172 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPF 243 (376)
T ss_dssp HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHH
T ss_pred HCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHH
Confidence 99999999999999999887 8888999999999 9999999999998662 38899999999999999999
Q ss_pred hhHHHHHHHHHHcccccchhhhhhccCCCCch-------------HHHHHHhCC--CcHHHHHHHhhC--------CCCC
Q 005790 315 LDRQVKLMKQLASGQIFNMEDIINAKNNDGRT-------------ALHMAITGN--VHLELVQLLMSA--------PSIN 371 (677)
Q Consensus 315 L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~T-------------pLh~A~~~~--~~~eiv~lLL~~--------~Gad 371 (677)
|.....-+..--. . +......|.. .+...+..+ ...+.+++|++. .|++
T Consensus 244 L~~~ga~~~~~~~-~-------l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~ 315 (376)
T 2aja_A 244 IARHVNRLKEMHD-A-------FKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI 315 (376)
T ss_dssp HHHHHHHHHHHHT-T-------TTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSS
T ss_pred HHhcCcccccccH-H-------HHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCC
Confidence 8665443322110 0 1111111111 111111111 156778888762 2444
Q ss_pred ccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHHH
Q 005790 372 VNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHIK 425 (677)
Q Consensus 372 in~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al~ 425 (677)
+| .+.||||+|+..|+.+ ++++|++.| ..++..|.|++.++-.
T Consensus 316 ~n----~~~~~L~~A~~~g~~e----~v~lLl~~~---~v~~~~~~~~~~~~~~ 358 (376)
T 2aja_A 316 PG----DANELLRLALRLGNQG----ACALLLSIP---SVLALTKANNYYINET 358 (376)
T ss_dssp TT----CCCHHHHHHHHHTCTT----HHHHHTTSH---HHHHSCC---------
T ss_pred CC----CccHHHHHHHHcCcHH----HHHHHHcCh---HHHHHHHHhccccccc
Confidence 43 5678999999999998 688888776 4466778888766443
No 65
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=1.6e-27 Score=231.36 Aligned_cols=157 Identities=22% Similarity=0.271 Sum_probs=109.3
Q ss_pred ccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 005790 194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRG 273 (677)
Q Consensus 194 ~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g 273 (677)
.|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|
T Consensus 34 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 112 (192)
T 2rfm_A 34 YNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFG 112 (192)
T ss_dssp TCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence 3455666666666666666666555555 445555556666666666666666666655555555555556666666555
Q ss_pred CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHh
Q 005790 274 QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAIT 353 (677)
Q Consensus 274 ~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~ 353 (677)
+.+++++|++.| ++++.+|..|.||||+|+.
T Consensus 113 ~~~~v~~Ll~~g-------------------------------------------------~~~~~~~~~g~t~L~~A~~ 143 (192)
T 2rfm_A 113 YSEMSYFLLEHG-------------------------------------------------ANVNDRNLEGETPLIVASK 143 (192)
T ss_dssp CHHHHHHHHHTT-------------------------------------------------CCSSCCCTTCCCHHHHHHH
T ss_pred CHHHHHHHHHCC-------------------------------------------------CCCCCCCCCCCCHHHHHHH
Confidence 555555555554 2266678889999999999
Q ss_pred CCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcC
Q 005790 354 GNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAG 406 (677)
Q Consensus 354 ~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~G 406 (677)
.+ +.+++++|++ .|++++.+|..|.||||+|+..++.+ ++++|+++|
T Consensus 144 ~~-~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~----~v~~Ll~~~ 190 (192)
T 2rfm_A 144 YG-RSEIVKKLLE-LGADISARDLTGLTAEASARIFGRQE----VIKIFTEVR 190 (192)
T ss_dssp HT-CHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHH----HHHHHHHHH
T ss_pred cC-CHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCcHH----HHHHHHhcc
Confidence 88 9999999999 89999999999999999999999987 566666553
No 66
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=6.7e-27 Score=221.46 Aligned_cols=159 Identities=21% Similarity=0.245 Sum_probs=147.4
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790 106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE 185 (677)
Q Consensus 106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~ 185 (677)
+.|.||||+|+..|+.++|++|++.++ +++..+..|.||||+|+ ..|+.+++++|+++|++++..+..
T Consensus 1 G~~~t~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~---------- 68 (167)
T 3v31_A 1 GANSLSVHQLAAQGEMLYLATRIEQEN-VINHTDEEGFTPLMWAA-AHGQIAVVEFLLQNGADPQLLGKG---------- 68 (167)
T ss_dssp CTTCCCHHHHHHTTCHHHHHHHHHHSS-CTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT----------
T ss_pred CCCcchHHHHHHCCCHHHHHHHHHcCC-CcCCCCCCCCCHHHHHH-HCCCHHHHHHHHHcCCCCCCcCCC----------
Confidence 358899999999999999999999986 57788999999999985 779999999999999998876544
Q ss_pred chhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 005790 186 IPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP 265 (677)
Q Consensus 186 ~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tp 265 (677)
|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||
T Consensus 69 ---------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 138 (167)
T 3v31_A 69 ---------RESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS 138 (167)
T ss_dssp ---------CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ---------CCcHHHHHHHcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 368999999999999999999999999 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCC
Q 005790 266 LHIAAYRGQPAVVEALILASP 286 (677)
Q Consensus 266 L~~A~~~g~~~iv~~LL~~g~ 286 (677)
||+|+..|+.+++++|++++.
T Consensus 139 l~~A~~~~~~~~~~~L~~~~~ 159 (167)
T 3v31_A 139 MDLAVALGYRSVQQVIESHLL 159 (167)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHH
Confidence 999999999999999998763
No 67
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=2.5e-27 Score=227.34 Aligned_cols=167 Identities=26% Similarity=0.305 Sum_probs=147.6
Q ss_pred cchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC
Q 005790 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ 274 (677)
Q Consensus 195 ~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~ 274 (677)
+.++||.|+..|+.++|++|++.+....+..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH 84 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 46899999999999999999999665448899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhC
Q 005790 275 PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITG 354 (677)
Q Consensus 275 ~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~ 354 (677)
.+++++|++.|. + ++.+|..|.||||+|+..
T Consensus 85 ~~~v~~Ll~~g~-~------------------------------------------------~~~~d~~g~t~L~~A~~~ 115 (179)
T 3f6q_A 85 RDIVQKLLQYKA-D------------------------------------------------INAVNEHGNVPLHYACFW 115 (179)
T ss_dssp HHHHHHHHHTTC-C------------------------------------------------TTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHcCC-C------------------------------------------------CCccCCCCCCHHHHHHHc
Confidence 999999999873 2 556678889999999998
Q ss_pred CCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccC
Q 005790 355 NVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSA 416 (677)
Q Consensus 355 ~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G 416 (677)
+ +.+++++|++ .|++++.+|..|.|||++|+..++.+ ++++|+++|++++..+..+
T Consensus 116 ~-~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~----~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 116 G-QDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLREL----LRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp T-CHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHHHHH----HHHHHHHTTCCCSCBCCCC
T ss_pred C-CHHHHHHHHH-CCCCcchhccCCCCcHHHHHHHHHHH----HHHHHHHhhcCcccCCccc
Confidence 8 9999999999 89999999999999999998877755 7899999999998876554
No 68
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=9.5e-27 Score=220.42 Aligned_cols=158 Identities=23% Similarity=0.274 Sum_probs=139.2
Q ss_pred cchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC
Q 005790 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ 274 (677)
Q Consensus 195 ~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~ 274 (677)
|.||||.|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 468999999999999999999999887 7788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhC
Q 005790 275 PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITG 354 (677)
Q Consensus 275 ~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~ 354 (677)
.+++++|++.+.. ++.+|..|.||||+|+..
T Consensus 82 ~~~v~~Ll~~g~~-------------------------------------------------~~~~~~~g~t~L~~A~~~ 112 (167)
T 3v31_A 82 TDIVKMLLDCGVD-------------------------------------------------VNEYDWNGGTPLLYAVHG 112 (167)
T ss_dssp HHHHHHHHHHTCC-------------------------------------------------TTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHCCCC-------------------------------------------------CCcCCCCCCCHHHHHHHc
Confidence 9999999988732 556678899999999998
Q ss_pred CCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCC
Q 005790 355 NVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGI 408 (677)
Q Consensus 355 ~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gad 408 (677)
+ +.+++++|++ .|++++.+|..|.||||+|+..++.++ +++|++++++
T Consensus 113 ~-~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~----~~~L~~~~~~ 160 (167)
T 3v31_A 113 N-HVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSV----QQVIESHLLK 160 (167)
T ss_dssp T-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHH----HHHHHHHHHH
T ss_pred C-CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHH----HHHHHHHHHH
Confidence 8 9999999999 899999999999999999999999884 5555555543
No 69
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=1.4e-26 Score=219.99 Aligned_cols=158 Identities=27% Similarity=0.275 Sum_probs=144.2
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790 106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE 185 (677)
Q Consensus 106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~ 185 (677)
..+.++|++||..|+.++|++|++.|+ +++..+..|.||||+|+ ..|+.+++++|+++|++++..+..
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~---------- 79 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGA-DVNAEDASGWTPLHLAA-FNGHLEIVEVLLKNGADVNAVDHA---------- 79 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT----------
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCCccCCC----------
Confidence 456789999999999999999999987 56778899999999985 779999999999999998866544
Q ss_pred chhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 005790 186 IPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTP 265 (677)
Q Consensus 186 ~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tp 265 (677)
|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||
T Consensus 80 ---------g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 149 (169)
T 2y1l_E 80 ---------GMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA 149 (169)
T ss_dssp ---------SCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ---------CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 478999999999999999999999998 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 005790 266 LHIAAYRGQPAVVEALILAS 285 (677)
Q Consensus 266 L~~A~~~g~~~iv~~LL~~g 285 (677)
||+|+..|+.+++++|++.|
T Consensus 150 l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 150 FDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHhCCHHHHHHHHHcC
Confidence 99999999999999999765
No 70
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=1.1e-26 Score=218.62 Aligned_cols=157 Identities=29% Similarity=0.345 Sum_probs=143.8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcc
Q 005790 107 YGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEI 186 (677)
Q Consensus 107 ~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~ 186 (677)
...||||+|+..|+.++|++|++.++ .++..+..|.||||+|+ . |+.+++++|+++|++++..+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~-~-~~~~~v~~Ll~~g~~~~~~~~~----------- 69 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNV-NVNAQNGFGRTALQVMK-L-GNPEIARRLLLRGANPDLKDRT----------- 69 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCC-CTTCCCTTSCCHHHHCC-S-SCHHHHHHHHHTTCCTTCCCTT-----------
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCC-CccccCccCccHHHHHH-c-CcHHHHHHHHHcCCCCCCCCCC-----------
Confidence 45799999999999999999999886 56778899999999974 6 9999999999999998876544
Q ss_pred hhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC-CCCCCCCCCcH
Q 005790 187 PSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI-INSTDHQGNTP 265 (677)
Q Consensus 187 ~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~-in~~d~~g~tp 265 (677)
|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++ ++..+..|.||
T Consensus 70 --------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~ 140 (162)
T 1ihb_A 70 --------GFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140 (162)
T ss_dssp --------SCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCH
T ss_pred --------CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcH
Confidence 478999999999999999999999998 78999999999999999999999999999998 69999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCC
Q 005790 266 LHIAAYRGQPAVVEALILASP 286 (677)
Q Consensus 266 L~~A~~~g~~~iv~~LL~~g~ 286 (677)
||+|+..|+.+++++|+++|+
T Consensus 141 l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 141 CDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHTC-
T ss_pred HHHHHHcCCHHHHHHHHHhCC
Confidence 999999999999999999984
No 71
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=6.5e-27 Score=221.10 Aligned_cols=161 Identities=22% Similarity=0.208 Sum_probs=146.5
Q ss_pred hcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhh
Q 005790 104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHI 183 (677)
Q Consensus 104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~ 183 (677)
.+..|.|+||.|+..|+.++|++|++.++......+..|.||||+|| ..|+.+++++|+++|++++..+..
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~-------- 74 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA-GYNRVSVVEYLLQHGADVHAKDKG-------- 74 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT--------
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHH-HcChHHHHHHHHhcCCCCCccCCC--------
Confidence 35678899999999999999999999888788888899999999985 779999999999999998876654
Q ss_pred hcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC
Q 005790 184 EEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGN 263 (677)
Q Consensus 184 ~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~ 263 (677)
|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus 75 -----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 142 (165)
T 3twr_A 75 -----------GLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 142 (165)
T ss_dssp -----------SCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred -----------CCCHHHHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence 378999999999999999999999999 78999999999999999999999999999999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCC
Q 005790 264 TPLHIAAYRGQPAVVEALILASP 286 (677)
Q Consensus 264 tpL~~A~~~g~~~iv~~LL~~g~ 286 (677)
||||+|+. ++.+++++|++.|+
T Consensus 143 t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 143 TPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp CTGGGSCT-TCHHHHHHHHTC--
T ss_pred ChhHhHhc-CChHHHHHHhhccc
Confidence 99999877 99999999998873
No 72
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=1.3e-26 Score=222.43 Aligned_cols=168 Identities=18% Similarity=0.190 Sum_probs=152.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcc
Q 005790 107 YGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEI 186 (677)
Q Consensus 107 ~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~ 186 (677)
.+.++||.||..|+.++|++|++.++.+++..+..|.||||+|| ..|+.+++++|+++|++++..+..
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~----------- 71 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWAC-REGRSAVVEMLIMRGARINVMNRG----------- 71 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTT-----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHH-HcCcHHHHHHHHHcCCCCCCcCCC-----------
Confidence 46789999999999999999999988888899999999999985 779999999999999999876554
Q ss_pred hhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 005790 187 PSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPL 266 (677)
Q Consensus 187 ~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL 266 (677)
|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.|||
T Consensus 72 --------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl 142 (179)
T 3f6q_A 72 --------DDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 142 (179)
T ss_dssp --------CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGG
T ss_pred --------CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcH
Confidence 478999999999999999999999999 88999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCccccCCCC
Q 005790 267 HIAAYRGQPAVVEALILASPSMISVKNTSG 296 (677)
Q Consensus 267 ~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g 296 (677)
++|+..++.+++++|++.| ++++..+..+
T Consensus 143 ~~A~~~~~~~~~~~L~~~g-~~~~~~~~~~ 171 (179)
T 3f6q_A 143 DKAKAPLRELLRERAEKMG-QNLNRIPYKD 171 (179)
T ss_dssp GGSCHHHHHHHHHHHHHTT-CCCSCBCCCC
T ss_pred HHHHHHHHHHHHHHHHHhh-cCcccCCccc
Confidence 9999999999999999999 5566554443
No 73
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=1.1e-26 Score=219.48 Aligned_cols=159 Identities=27% Similarity=0.324 Sum_probs=137.8
Q ss_pred hccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHc
Q 005790 193 EMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYR 272 (677)
Q Consensus 193 ~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~ 272 (677)
..+.|+||.|+..|+.++++.|++.+....+..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..
T Consensus 6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence 44679999999999999999999976654477888999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHH
Q 005790 273 GQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI 352 (677)
Q Consensus 273 g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~ 352 (677)
|+.+++++|++.|. + ++.+|..|.||||+|+
T Consensus 86 ~~~~~v~~Ll~~g~-~------------------------------------------------~~~~~~~g~t~L~~A~ 116 (165)
T 3twr_A 86 GHYEVAELLVKHGA-V------------------------------------------------VNVADLWKFTPLHEAA 116 (165)
T ss_dssp TCHHHHHHHHHTTC-C------------------------------------------------TTCCCTTCCCHHHHHH
T ss_pred CcHHHHHHHHhCCC-C------------------------------------------------CCCcCCCCCCHHHHHH
Confidence 99999999999873 2 4556778888888888
Q ss_pred hCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCC
Q 005790 353 TGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGG 407 (677)
Q Consensus 353 ~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Ga 407 (677)
..+ +.+++++|++ .|++++.+|..|.||||+|+. ++.+ ++++|+++||
T Consensus 117 ~~~-~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~~~----i~~~L~~~gA 164 (165)
T 3twr_A 117 AKG-KYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTD----IQDLLRGDAA 164 (165)
T ss_dssp HTT-CHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TCHH----HHHHHHTC--
T ss_pred HcC-CHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CChH----HHHHHhhccc
Confidence 887 8999999998 899999999999999998776 6655 6888888876
No 74
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=9.5e-29 Score=247.67 Aligned_cols=201 Identities=17% Similarity=0.104 Sum_probs=139.8
Q ss_pred HHHHHHcCCCcc--ccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHH
Q 005790 124 VKQLLDKNPLLV--FGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHA 201 (677)
Q Consensus 124 vk~LL~~g~~~~--~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~ 201 (677)
|+.||++++... +..+..+.||||+|| ..|+.+++++|+++|++++..+.. |.||||+
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~d~~-------------------g~tpLh~ 60 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAA-LTGELEVVQQAVKEMNDPSQPNEE-------------------GITALHN 60 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHH-HHTCHHHHHHHHHHSSCTTCCCTT-------------------SCCHHHH
T ss_pred CeehhccCCCCccccccccchhHHHHHHH-HcCCHHHHHHHHhcCCCCCCCCCC-------------------CCCHHHH
Confidence 355666665332 334455666777774 557777888777777777655443 3678888
Q ss_pred HHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHH--HHcCCHHHH
Q 005790 202 AARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD-HQGNTPLHIA--AYRGQPAVV 278 (677)
Q Consensus 202 A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d-~~g~tpL~~A--~~~g~~~iv 278 (677)
|+..|+.++|++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+| +..|+.+++
T Consensus 61 A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v 139 (229)
T 2vge_A 61 AICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCA 139 (229)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHH
Confidence 88888888888888888887 6777888888888888888888888888888888876 5788888888 888888888
Q ss_pred HHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhh--hhccCCCCchHHHHHHhCCC
Q 005790 279 EALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDI--INAKNNDGRTALHMAITGNV 356 (677)
Q Consensus 279 ~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~--in~~d~~G~TpLh~A~~~~~ 356 (677)
++|++.| ++++..+..|.|+++.++..... ++|+ ..+++ ++.+|..|.||||+|+..|
T Consensus 140 ~~Ll~~g-a~~~~~~~~~~~~l~~~~~~~~~-------------~~ll-----~~ga~~~~~~~d~~G~TpL~~A~~~g- 199 (229)
T 2vge_A 140 TYLADVE-QSMGLMNSGAVYALWDYSAEFGD-------------ELSF-----REGESVTVLRRDGPEETDWWWAALHG- 199 (229)
T ss_dssp HHHHHHH-HHTTTSGGGEEEESSCBCCSSTT-------------BCCB-----CTTCEEEEEESSCTTCSSEEEEEETT-
T ss_pred HHHHHcC-CCcccccCCchHHHHHHhhcccc-------------ccCc-----cccccccccccCCCcccHHHHHHHcC-
Confidence 8888887 56777788888888865543211 2222 22344 6778888899999988877
Q ss_pred cHHHHHHHh
Q 005790 357 HLELVQLLM 365 (677)
Q Consensus 357 ~~eiv~lLL 365 (677)
+.++|+.++
T Consensus 200 ~~~~v~~~~ 208 (229)
T 2vge_A 200 QEGYVPRNY 208 (229)
T ss_dssp EEEEEEGGG
T ss_pred Ccceeehhh
Confidence 888886543
No 75
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=4.9e-26 Score=212.45 Aligned_cols=151 Identities=25% Similarity=0.241 Sum_probs=138.5
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcch
Q 005790 108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP 187 (677)
Q Consensus 108 G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~ 187 (677)
..|+|+.|+..|+.++|++|++.++... .+..|.||||+|+ ..|+.+++++|+++|++++..+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~------------ 66 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAA-QYGHFSTTEVLLRAGVSRDARTKV------------ 66 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHH-HHTCHHHHHHHHTTTCCTTCCCTT------------
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCCCCCCC------------
Confidence 4589999999999999999999997443 5788999999986 669999999999999998866544
Q ss_pred hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 005790 188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLH 267 (677)
Q Consensus 188 ~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~ 267 (677)
|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||
T Consensus 67 -------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~ 138 (153)
T 1awc_B 67 -------DRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFD 138 (153)
T ss_dssp -------CCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred -------CCCHHHHHHHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence 478999999999999999999999998 788999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHH
Q 005790 268 IAAYRGQPAVVEAL 281 (677)
Q Consensus 268 ~A~~~g~~~iv~~L 281 (677)
+|+..|+.+++++|
T Consensus 139 ~A~~~~~~~i~~~L 152 (153)
T 1awc_B 139 ISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 99999999999987
No 76
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=4.6e-26 Score=212.65 Aligned_cols=146 Identities=29% Similarity=0.338 Sum_probs=133.9
Q ss_pred chHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCH
Q 005790 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQP 275 (677)
Q Consensus 196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~ 275 (677)
.++||.|+..|+.+++++|++.|+++ + .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence 58999999999999999999999987 3 588999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCC
Q 005790 276 AVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGN 355 (677)
Q Consensus 276 ~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~ 355 (677)
+++++|++.|. + ++.+|..|.||||+|+..+
T Consensus 81 ~~v~~Ll~~g~-~------------------------------------------------~~~~~~~g~t~L~~A~~~~ 111 (153)
T 1awc_B 81 NIVEVLLKHGA-D------------------------------------------------VNAKDMLKMTALHWATEHN 111 (153)
T ss_dssp HHHHHHHTTTC-C------------------------------------------------TTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCC-C------------------------------------------------CCCCCCCCCCHHHHHHHcC
Confidence 99999998873 2 4556788899999999988
Q ss_pred CcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCch
Q 005790 356 VHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSAS 394 (677)
Q Consensus 356 ~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~ 394 (677)
+.+++++|++ .|++++.+|..|.||||+|+..++.++
T Consensus 112 -~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i 148 (153)
T 1awc_B 112 -HQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDL 148 (153)
T ss_dssp -CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred -CHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHH
Confidence 9999999999 899999999999999999999999874
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=5.8e-26 Score=212.30 Aligned_cols=154 Identities=29% Similarity=0.330 Sum_probs=143.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcch
Q 005790 108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIP 187 (677)
Q Consensus 108 G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~ 187 (677)
+.||||+|+..|+.++|++|++....+++..+..|.||||+ | ..|+.+++++|+++|++++..+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~-~~~~~~~v~~Ll~~g~~~~~~~~~------------ 67 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-M-MFGSTAIALELLKQGASPNVQDTS------------ 67 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-S-CTTCHHHHHHHHHTTCCTTCCCTT------------
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-H-HcCCHHHHHHHHHCCCCCCCcCCC------------
Confidence 56899999999999999999999655788889999999999 5 679999999999999999876554
Q ss_pred hhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 005790 188 SVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLH 267 (677)
Q Consensus 188 ~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~ 267 (677)
|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ ++++..|..|.||||
T Consensus 68 -------g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~ 138 (156)
T 1bd8_A 68 -------GTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLE 138 (156)
T ss_dssp -------SCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHH
T ss_pred -------CCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHH
Confidence 479999999999999999999999998 78999999999999999999999999999 999999999999999
Q ss_pred HHHHcCCHHHHHHHHHh
Q 005790 268 IAAYRGQPAVVEALILA 284 (677)
Q Consensus 268 ~A~~~g~~~iv~~LL~~ 284 (677)
+|+..|+.+++++|+++
T Consensus 139 ~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 139 LALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHSCCHHHHHHHHTT
T ss_pred HHHHcCcHHHHHHHHhh
Confidence 99999999999999864
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=1.7e-26 Score=232.59 Aligned_cols=169 Identities=20% Similarity=0.234 Sum_probs=123.1
Q ss_pred ccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 005790 194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRG 273 (677)
Q Consensus 194 ~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g 273 (677)
.|.||||.|+..++.++++.||++|+++ +. +..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g 81 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG 81 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCc-cc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 3689999999999999999999999998 43 477899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHh
Q 005790 274 QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAIT 353 (677)
Q Consensus 274 ~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~ 353 (677)
+.+++++|+++|. + +|.+|..|.||||+|+.
T Consensus 82 ~~~~v~~Ll~~ga-~------------------------------------------------~~~~d~~g~tpL~~A~~ 112 (239)
T 1ycs_B 82 HTEIVKFLVQFGV-N------------------------------------------------VNAADSDGWTPLHCAAS 112 (239)
T ss_dssp CHHHHHHHHHHTC-C------------------------------------------------TTCCCTTCCCHHHHHHH
T ss_pred CHHHHHHHHHcCC-C------------------------------------------------CCccCCCCCCHHHHHHH
Confidence 9999999999883 2 56678889999999999
Q ss_pred CCCcHHHHHHHhhCCCCCccccCCCCC-cHHHHH--hhCCCCchHHHHHHHHHHcCCCCCCCcccCCch
Q 005790 354 GNVHLELVQLLMSAPSINVNVRDNDGM-TTLDLL--KQRPQSASSDILIRHLISAGGIFGCQDYSARRA 419 (677)
Q Consensus 354 ~~~~~eiv~lLL~~~Gadin~~d~~G~-TpL~~A--~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~ 419 (677)
.+ +.++|++|++ .|++++.++..|. ||||+| +..|+.+ ++++|+++|++++..+..+.++
T Consensus 113 ~~-~~~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a~~~~~g~~~----~~~~Ll~~~a~~~~~~~~~~~a 175 (239)
T 1ycs_B 113 CN-NVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQ----CSQFLYGVQEKMGIMNKGVIYA 175 (239)
T ss_dssp TT-CHHHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCC----HHHHHHHHHHHTTTTGGGEEEE
T ss_pred cC-CHHHHHHHHH-cCCCcceecCCCCcchHHHHHHhhhccHH----HHHHHHHhhhcccccccceEEE
Confidence 88 9999999999 9999999998887 999999 7888888 6899999999999886655554
No 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=2.1e-25 Score=208.54 Aligned_cols=146 Identities=23% Similarity=0.346 Sum_probs=122.4
Q ss_pred cchHHHHHHhcCCHHHHHHHHhcC-CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 005790 195 MNRAVHAAARGGNLKILKELLENC-TDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRG 273 (677)
Q Consensus 195 ~~t~Lh~A~~~g~~eivk~LL~~g-a~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g 273 (677)
+.|+||.|+..|+.+++++|++.. .++ +..+..|.||||+ +..|+.+++++|+++|++++..|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCc-cccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence 358999999999999999999993 255 7789999999999 9999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHh
Q 005790 274 QPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAIT 353 (677)
Q Consensus 274 ~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~ 353 (677)
+.+++++|++.| .+ ++.+|..|.||||+|+.
T Consensus 80 ~~~~v~~Ll~~g-~~------------------------------------------------~~~~~~~g~t~L~~A~~ 110 (156)
T 1bd8_A 80 FLDTLKVLVEHG-AD------------------------------------------------VNVPDGTGALPIHLAVQ 110 (156)
T ss_dssp CHHHHHHHHHTT-CC------------------------------------------------SCCCCTTSCCHHHHHHH
T ss_pred cHHHHHHHHHcC-CC------------------------------------------------CCCcCCCCCcHHHHHHH
Confidence 999999999988 43 34445667777777777
Q ss_pred CCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCch
Q 005790 354 GNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSAS 394 (677)
Q Consensus 354 ~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~ 394 (677)
.+ +.+++++|++ . ++++.+|..|.||||+|+..++.++
T Consensus 111 ~~-~~~~v~~Ll~-~-~~~~~~~~~g~t~l~~A~~~~~~~~ 148 (156)
T 1bd8_A 111 EG-HTAVVSFLAA-E-SDLHRRDARGLTPLELALQRGAQDL 148 (156)
T ss_dssp HT-CHHHHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCCHHH
T ss_pred hC-hHHHHHHHHh-c-cCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 66 7777777777 5 7777777777777777777777663
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=6.4e-26 Score=228.40 Aligned_cols=179 Identities=16% Similarity=0.056 Sum_probs=129.3
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhc
Q 005790 106 GYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEE 185 (677)
Q Consensus 106 ~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~ 185 (677)
..|.||||.|+..|+.++++.|+++|+... .+..|.||||+|| ..|+.+++++|+++|++++..+..
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~~d~~---------- 69 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSS-LEGEFDLVQRIIYEVDDPSLPNDE---------- 69 (239)
T ss_dssp ------------------------------------CHHHHHHHH-HHTCHHHHHHHTSTTSSCCCCCTT----------
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHH-HcCCHHHHHHHHHcCCCCCCcCCC----------
Confidence 358999999999999999999999997554 2467899999985 679999999999999998877654
Q ss_pred chhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC-c
Q 005790 186 IPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGN-T 264 (677)
Q Consensus 186 ~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~-t 264 (677)
|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++++..+..|. |
T Consensus 70 ---------g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t 139 (239)
T 1ycs_B 70 ---------GITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT 139 (239)
T ss_dssp ---------SCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCC
T ss_pred ---------CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcc
Confidence 379999999999999999999999999 88999999999999999999999999999999999998877 9
Q ss_pred HHHHH--HHcCCHHHHHHHHHhCCCCcccc---------CCCCCchhhhhhhcCc
Q 005790 265 PLHIA--AYRGQPAVVEALILASPSMISVK---------NTSGETFLHSAVSGFQ 308 (677)
Q Consensus 265 pL~~A--~~~g~~~iv~~LL~~g~~~~~~~---------~~~g~tpLh~A~~~~~ 308 (677)
|||+| +..|+.+++++|++.+ ++++.. +..+.+++++++..|.
T Consensus 140 ~l~~a~~~~~g~~~~~~~Ll~~~-a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 140 AADKCEEMEEGYTQCSQFLYGVQ-EKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHCCSSSTTCCCHHHHHHHHH-HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred hHHHHHHhhhccHHHHHHHHHhh-hcccccccceEEEEeccCCCCCCcccccCCC
Confidence 99999 8889999999999987 444443 6678889988887553
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=3.4e-24 Score=195.96 Aligned_cols=133 Identities=24% Similarity=0.305 Sum_probs=112.0
Q ss_pred CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCc
Q 005790 219 TDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGET 298 (677)
Q Consensus 219 a~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~t 298 (677)
+++ +..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+. |+.+++++|++++. +
T Consensus 3 ~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~-~---------- 69 (136)
T 1d9s_A 3 PGI-HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGA-E---------- 69 (136)
T ss_dssp CCC-SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTC-C----------
T ss_pred CCc-cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCC-C----------
Confidence 455 6678888888888888888888888888888888888888888888888 88888888888773 2
Q ss_pred hhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCC-CchHHHHHHhCCCcHHHHHHHhhCCCCCccccCC
Q 005790 299 FLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNND-GRTALHMAITGNVHLELVQLLMSAPSINVNVRDN 377 (677)
Q Consensus 299 pLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~-G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~ 377 (677)
++.+|.. |.||||+|+..+ +.+++++|++ .|++++.+|.
T Consensus 70 --------------------------------------~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~~d~ 109 (136)
T 1d9s_A 70 --------------------------------------PNCADPATLTRPVHDAAREG-FLDTLVVLHR-AGARLDVCDA 109 (136)
T ss_dssp --------------------------------------SSCCBTTTTBCHHHHHHHHT-CHHHHHHHHH-TCCCCCCCSS
T ss_pred --------------------------------------CCCcCCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCccCC
Confidence 4556777 889999999888 9999999999 8999999999
Q ss_pred CCCcHHHHHhhCCCCchHHHHHHHHHHcCCC
Q 005790 378 DGMTTLDLLKQRPQSASSDILIRHLISAGGI 408 (677)
Q Consensus 378 ~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gad 408 (677)
.|+||||+|+..++.+ ++++|+++|||
T Consensus 110 ~g~tpl~~A~~~~~~~----~~~~Ll~~Gad 136 (136)
T 1d9s_A 110 WGRLPVDLAEEQGHRD----IARYLHAATGD 136 (136)
T ss_dssp SSSCHHHHHHHHTCHH----HHHHHHHHHCC
T ss_pred CCCCHHHHHHHcCCHH----HHHHHHHcCCC
Confidence 9999999999999876 68888888876
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=3.7e-24 Score=200.58 Aligned_cols=139 Identities=18% Similarity=0.177 Sum_probs=87.2
Q ss_pred ccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCc-HHHHHHHc
Q 005790 194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNT-PLHIAAYR 272 (677)
Q Consensus 194 ~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~t-pL~~A~~~ 272 (677)
.+.||||+|+..|+.++|++|+++|+++ +..+..|+||||+|+ .|+.+++++|+++|++++..|..|.| |||+|+..
T Consensus 11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~ 88 (156)
T 1bi7_B 11 PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE 88 (156)
T ss_dssp CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred cchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHC
Confidence 3467777777777777777777777776 566677777777764 67777777777777777777777776 77777777
Q ss_pred CCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHH
Q 005790 273 GQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAI 352 (677)
Q Consensus 273 g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~ 352 (677)
|+.+++++|+++|. + ++.+|..|.||||+|+
T Consensus 89 ~~~~~v~~Ll~~ga-~------------------------------------------------~~~~d~~g~tpl~~A~ 119 (156)
T 1bi7_B 89 GFLDTLVVLHRAGA-R------------------------------------------------LDVRDAWGRLPVDLAE 119 (156)
T ss_dssp TCHHHHHHHHHHTC-C------------------------------------------------SSCCCTTCCCHHHHHH
T ss_pred CCHHHHHHHHHcCC-C------------------------------------------------CcccCCCCCCHHHHHH
Confidence 77777777777662 2 4445666777777777
Q ss_pred hCCCcHHHHHHHhhCCCCCccccCCCCCcHHHH
Q 005790 353 TGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385 (677)
Q Consensus 353 ~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~ 385 (677)
..+ +.+++++|++ .|++++.+|..|.||.+-
T Consensus 120 ~~~-~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~ 150 (156)
T 1bi7_B 120 ELG-HRDVARYLRA-AAGGTRGSNHARIDAAEG 150 (156)
T ss_dssp HHT-CHHHHHHHSS-CC----------------
T ss_pred HhC-HHHHHHHHHH-cCCCCCccCcCcCccccc
Confidence 766 7777777777 777777777777777663
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=1.7e-24 Score=202.92 Aligned_cols=144 Identities=24% Similarity=0.272 Sum_probs=107.9
Q ss_pred cCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhh
Q 005790 224 YRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303 (677)
Q Consensus 224 ~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A 303 (677)
..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+ .|+.+++++|++.|. +
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~-~--------------- 69 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGA-E--------------- 69 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC-C---------------
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCC-C---------------
Confidence 35667788888888888888888888888888888888888888875 788888888887762 2
Q ss_pred hhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCch-HHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcH
Q 005790 304 VSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRT-ALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTT 382 (677)
Q Consensus 304 ~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~T-pLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~Tp 382 (677)
++.+|..|.| |||+|+..+ +.++|++|++ .|++++.+|..|+||
T Consensus 70 ---------------------------------~~~~d~~g~ttpL~~A~~~~-~~~~v~~Ll~-~ga~~~~~d~~g~tp 114 (156)
T 1bi7_B 70 ---------------------------------PNCADPATLTRPVHDAAREG-FLDTLVVLHR-AGARLDVRDAWGRLP 114 (156)
T ss_dssp ---------------------------------CCCCCTTTCCCHHHHHHHHT-CHHHHHHHHH-HTCCSSCCCTTCCCH
T ss_pred ---------------------------------CCCcCCCCCcHHHHHHHHCC-CHHHHHHHHH-cCCCCcccCCCCCCH
Confidence 5666788898 999999988 9999999999 899999999999999
Q ss_pred HHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHH
Q 005790 383 LDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASH 423 (677)
Q Consensus 383 L~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~a 423 (677)
||+|+..++.+ ++++|+++|++++.++..|.||...+
T Consensus 115 l~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 115 VDLAEELGHRD----VARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHHHTCHH----HHHHHSSCC-----------------
T ss_pred HHHHHHhCHHH----HHHHHHHcCCCCCccCcCcCcccccC
Confidence 99999999987 79999999999999999999997643
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=4.2e-24 Score=206.69 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=120.8
Q ss_pred chHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCH----HHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 005790 196 NRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQV----EVVKDLIASFDIINSTDHQGNTPLHIAAY 271 (677)
Q Consensus 196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~----eivk~Ll~~ga~in~~d~~g~tpL~~A~~ 271 (677)
.++|+.|++.|+.+.++.++..+.+. ..+..|+||||+|+.+|+. +++++|+++|+++|.+|..|+||||+|+.
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~ 84 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ 84 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 47899999999999999999987543 2237899999999999975 59999999999999999999999999999
Q ss_pred cCC------HHHHHHHHHhCCCCccccCCCCC-chhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCC
Q 005790 272 RGQ------PAVVEALILASPSMISVKNTSGE-TFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDG 344 (677)
Q Consensus 272 ~g~------~~iv~~LL~~g~~~~~~~~~~g~-tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G 344 (677)
.++ .+++++|+++| ++++.+|..|. ||||+|+..+... .
T Consensus 85 ~~~~~~~~~~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~~~~~~~-----~---------------------------- 130 (186)
T 3t8k_A 85 GGGNDITGTTELCKIFLEKG-ADITALYKPYKIVVFKNIFNYFVDE-----N---------------------------- 130 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTT-CCSSSCBGGGTBCTTGGGGGCCSCH-----H----------------------------
T ss_pred cCCcchhhHHHHHHHHHHCC-CCCCccCCCcCchHHHHHHHcCCCh-----h----------------------------
Confidence 987 57899999988 67888888787 7888777632110 1
Q ss_pred chHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHH
Q 005790 345 RTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRH 401 (677)
Q Consensus 345 ~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~ 401 (677)
+ +.+++++|++..|+|+|.+|..|.||||+|+..++.++++.|.++
T Consensus 131 ----------~-~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 131 ----------E-MIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp ----------H-HHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred ----------h-HHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 1 345666666545666666666666666666666666543333333
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=1.6e-23 Score=191.44 Aligned_cols=133 Identities=23% Similarity=0.233 Sum_probs=68.9
Q ss_pred CCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCc
Q 005790 99 KNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGE 178 (677)
Q Consensus 99 ~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~ 178 (677)
.+++..+..|.||||+|+..|+.++|++|+++++ +++..+..|.||||+|+ . |+.+++++|+++|++++..+...
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-~-~~~~~v~~Ll~~g~~~~~~~~~~-- 77 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGA-DPNALNRFGRRPIQVMM-M-GSAQVAELLLLHGAEPNCADPAT-- 77 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTCCTTTTTST-T-SCHHHHHHHHHHTCCSSCCBTTT--
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCC-CcCCcCCCCCCHHHHHH-c-CCHHHHHHHHHCCCCCCCcCCCC--
Confidence 4455555556666666666666666666665554 34444555555555553 3 55555555555555554433220
Q ss_pred chhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCC
Q 005790 179 LEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFD 253 (677)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga 253 (677)
|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..++.+++++|+++|+
T Consensus 78 ----------------g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 78 ----------------LTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp ----------------TBCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred ----------------CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 134555555555555555555555544 4444455555555555555555555555444
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=1e-23 Score=203.87 Aligned_cols=155 Identities=16% Similarity=0.088 Sum_probs=134.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCH----HHHHHHHhcCCCcccccccCCcchhhh
Q 005790 108 GGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNC----DVFRLIYDFAVSPRFLTAKGGELEEHI 183 (677)
Q Consensus 108 G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~----evv~lLl~~Gad~~~~~~~~~~~~~~~ 183 (677)
+.++|+.|+..|+.+.++.++..+.... .+..|+||||+|+ ..|+. +++++|+++|++++..+..|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~--~~~~g~T~Lh~A~-~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g------- 75 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVL-RNNNDEARYKISMFLINKGADIKSRTKEG------- 75 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSCH--HHHHTTTHHHHHT-TCSCHHHHHHHHHHHHHTTCCSSCCCTTC-------
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcccc--cccCCCCHHHHHH-HcCCcchHHHHHHHHHHCCCCCCCCCCCC-------
Confidence 4578999999999999999998875332 2367999999985 66764 59999999999999876553
Q ss_pred hcchhhhhhhccchHHHHHHhcCC------HHHHHHHHhcCCCccccCCCCCC-cHHHHHHHhC-----CHHHHHHHHh-
Q 005790 184 EEIPSVYKWEMMNRAVHAAARGGN------LKILKELLENCTDVLTYRDKQGS-TILHAAAGRG-----QVEVVKDLIA- 250 (677)
Q Consensus 184 ~~~~~~~~~~~~~t~Lh~A~~~g~------~eivk~LL~~ga~~~~~~d~~g~-TpL~~A~~~g-----~~eivk~Ll~- 250 (677)
+||||+|+..|+ .+++++||++|+++ +.+|..|. ||||+|+..+ +.+++++|++
T Consensus 76 ------------~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~ 142 (186)
T 3t8k_A 76 ------------TTLFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQ 142 (186)
T ss_dssp ------------CCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTS
T ss_pred ------------CcHHHHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHh
Confidence 789999999887 68999999999999 88999999 9999999844 4679999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 005790 251 SFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285 (677)
Q Consensus 251 ~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g 285 (677)
+|++++.+|..|.||||+|+..|+.++|++|++..
T Consensus 143 ~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 143 SGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp TTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999998764
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.88 E-value=3.4e-22 Score=178.82 Aligned_cols=126 Identities=40% Similarity=0.620 Sum_probs=86.2
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcC
Q 005790 228 QGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGF 307 (677)
Q Consensus 228 ~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~ 307 (677)
+|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+. +
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~------------------- 60 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-D------------------- 60 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-C-------------------
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCC-C-------------------
Confidence 36677777777777777777777777777777777777777777777777777776652 1
Q ss_pred chHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHh
Q 005790 308 QTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLK 387 (677)
Q Consensus 308 ~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~ 387 (677)
++.+|..|.||||+|+..+ +.+++++|++ .|++++.+|..|.|||++|+
T Consensus 61 -----------------------------~~~~~~~g~t~l~~A~~~~-~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~ 109 (126)
T 1n0r_A 61 -----------------------------VNAKDKNGRTPLHLAARNG-HLEVVKLLLE-AGADVNAKDKNGRTPLHLAA 109 (126)
T ss_dssp -----------------------------TTCCCTTSCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHH
T ss_pred -----------------------------CcccCCCCCcHHHHHHHcC-hHHHHHHHHH-cCCCCcccCCCCCCHHHHHH
Confidence 3344556666777776666 6777777777 67777777777777777777
Q ss_pred hCCCCchHHHHHHHHHHcCCC
Q 005790 388 QRPQSASSDILIRHLISAGGI 408 (677)
Q Consensus 388 ~~~~~~~~~~lv~~Ll~~Gad 408 (677)
..++.+ ++++|+++|||
T Consensus 110 ~~~~~~----~~~~Ll~~Gad 126 (126)
T 1n0r_A 110 RNGHLE----VVKLLLEAGAY 126 (126)
T ss_dssp HTTCHH----HHHHHHHHTCC
T ss_pred HcCcHH----HHHHHHHcCCC
Confidence 777655 56666666664
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.88 E-value=5e-22 Score=181.42 Aligned_cols=124 Identities=30% Similarity=0.441 Sum_probs=107.5
Q ss_pred hhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 005790 192 WEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAY 271 (677)
Q Consensus 192 ~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~ 271 (677)
...+.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 89 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 344679999999999999999999999998 7889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHH
Q 005790 272 RGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMA 351 (677)
Q Consensus 272 ~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A 351 (677)
.|+.+++++|+++| ++ ++.+|..|.||||+|
T Consensus 90 ~~~~~~v~~Ll~~g-~~------------------------------------------------~~~~~~~g~tpl~~A 120 (136)
T 2jab_A 90 IGHLEIAEVLLKHG-AD------------------------------------------------VNAQDKFGKTAFDIS 120 (136)
T ss_dssp HTCHHHHHHHHHTT-CC------------------------------------------------TTCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHHcC-CC------------------------------------------------CcCcCCCCCCHHHHH
Confidence 99999999999988 33 344456667777777
Q ss_pred HhCCCcHHHHHHHhh
Q 005790 352 ITGNVHLELVQLLMS 366 (677)
Q Consensus 352 ~~~~~~~eiv~lLL~ 366 (677)
+..+ +.+++++|++
T Consensus 121 ~~~~-~~~~~~~Ll~ 134 (136)
T 2jab_A 121 IGNG-NEDLAEILQK 134 (136)
T ss_dssp HHTT-CHHHHHHHHH
T ss_pred HHCC-CHHHHHHHHH
Confidence 7766 7777777776
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.87 E-value=9.6e-22 Score=175.82 Aligned_cols=125 Identities=44% Similarity=0.631 Sum_probs=113.8
Q ss_pred cchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC
Q 005790 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ 274 (677)
Q Consensus 195 ~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~ 274 (677)
|+||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..++.+++++|+++|++++..|..|.||||+|+..|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 679999999999999999999999998 7789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhC
Q 005790 275 PAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITG 354 (677)
Q Consensus 275 ~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~ 354 (677)
.+++++|++.|. + ++.+|..|.||||+|+..
T Consensus 81 ~~~~~~Ll~~g~-~------------------------------------------------~~~~~~~g~t~l~~A~~~ 111 (126)
T 1n0r_A 81 LEVVKLLLEAGA-D------------------------------------------------VNAKDKNGRTPLHLAARN 111 (126)
T ss_dssp HHHHHHHHHTTC-C------------------------------------------------TTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHcCC-C------------------------------------------------CcccCCCCCCHHHHHHHc
Confidence 999999999873 2 445567788888888887
Q ss_pred CCcHHHHHHHhhCCCCC
Q 005790 355 NVHLELVQLLMSAPSIN 371 (677)
Q Consensus 355 ~~~~eiv~lLL~~~Gad 371 (677)
+ +.+++++|++ +|+|
T Consensus 112 ~-~~~~~~~Ll~-~Gad 126 (126)
T 1n0r_A 112 G-HLEVVKLLLE-AGAY 126 (126)
T ss_dssp T-CHHHHHHHHH-HTCC
T ss_pred C-cHHHHHHHHH-cCCC
Confidence 7 8888888888 7875
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.87 E-value=6.6e-22 Score=180.65 Aligned_cols=126 Identities=26% Similarity=0.251 Sum_probs=93.2
Q ss_pred CCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcC
Q 005790 139 GEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENC 218 (677)
Q Consensus 139 ~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~g 218 (677)
...+.||||+|| ..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|
T Consensus 11 ~~~~~t~l~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~-------------------g~t~L~~A~~~~~~~~v~~Ll~~g 70 (136)
T 2jab_A 11 GSDLGKKLLEAA-RAGQDDEVRILMANGADVNAKDEY-------------------GLTPLYLATAHGHLEIVEVLLKNG 70 (136)
T ss_dssp -CHHHHHHHHHH-HHTCHHHHHHHHHTTCCTTCCCTT-------------------SCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cccccHHHHHHH-HhCCHHHHHHHHHcCCCCCCcCCC-------------------CCCHHHHHHHcCCHHHHHHHHHcC
Confidence 344567777764 557777777777777766654433 357777777777777788888777
Q ss_pred CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 005790 219 TDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILAS 285 (677)
Q Consensus 219 a~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g 285 (677)
+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.|
T Consensus 71 ~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 71 ADV-NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 777 667778888888888888888888888888888888888888888888888888888887654
No 91
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.86 E-value=1.3e-21 Score=197.60 Aligned_cols=143 Identities=27% Similarity=0.262 Sum_probs=130.3
Q ss_pred hhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHH
Q 005790 192 WEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD-HQGNTPLHIAA 270 (677)
Q Consensus 192 ~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d-~~g~tpL~~A~ 270 (677)
...|.||||+|+..|+.++|++|++ |+++ +..|..|+||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 3457899999999999999999999 9988 7899999999999999999999999999999999998 88999999999
Q ss_pred HcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHH
Q 005790 271 YRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHM 350 (677)
Q Consensus 271 ~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~ 350 (677)
..|+.+++++|+++| ++++.++..|.||||+|+.. .....+.||||+
T Consensus 120 ~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~--------------------------------~~~~~~~~~l~~ 166 (244)
T 3ui2_A 120 GYVRPEVVEALVELG-ADIEVEDERGLTALELAREI--------------------------------LKTTPKGNPMQF 166 (244)
T ss_dssp HTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHH--------------------------------HTTCCCSSHHHH
T ss_pred HcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHH--------------------------------HhccCCCCHHHH
Confidence 999999999999998 78999999999999999851 123578999999
Q ss_pred HHhCCCcHHHHHHHhhCCCCC
Q 005790 351 AITGNVHLELVQLLMSAPSIN 371 (677)
Q Consensus 351 A~~~~~~~eiv~lLL~~~Gad 371 (677)
|+..| +.+++++|++ .+.+
T Consensus 167 a~~~g-~~~iv~~L~~-~~~~ 185 (244)
T 3ui2_A 167 GRRIG-LEKVINVLEG-QVFE 185 (244)
T ss_dssp HHHHH-HHHHHHHHHH-HHEE
T ss_pred HHHcC-hHHHHHHHHH-hccc
Confidence 99988 9999999998 5544
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=2.1e-21 Score=186.87 Aligned_cols=140 Identities=28% Similarity=0.269 Sum_probs=128.5
Q ss_pred hhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHH
Q 005790 191 KWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTD-HQGNTPLHIA 269 (677)
Q Consensus 191 ~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d-~~g~tpL~~A 269 (677)
.+..|.||||+|+..|+.+++++|++ |+++ +..|..|+||||+|+..|+.+++++|+++|++++..+ ..|+||||+|
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 34567899999999999999999999 9988 7899999999999999999999999999999999998 8899999999
Q ss_pred HHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHH
Q 005790 270 AYRGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALH 349 (677)
Q Consensus 270 ~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh 349 (677)
+..|+.+++++|+++| ++++.+|..|.||||+|+..+ ....+.++|+
T Consensus 118 ~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~--------------------------------~~~~~~~~l~ 164 (183)
T 3deo_A 118 AGYVRPEVVEALVELG-ADIEVEDERGLTALELAREIL--------------------------------KTTPKGNPMQ 164 (183)
T ss_dssp HHTTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHHH--------------------------------HTCCCCSHHH
T ss_pred HhcCcHHHHHHHHHcC-CCCcCCCCCCCCHHHHHHHhc--------------------------------cCcccccHHH
Confidence 9999999999999998 789999999999999999621 1246789999
Q ss_pred HHHhCCCcHHHHHHHhh
Q 005790 350 MAITGNVHLELVQLLMS 366 (677)
Q Consensus 350 ~A~~~~~~~eiv~lLL~ 366 (677)
+|+..+ +.+++++|.+
T Consensus 165 ~a~~~~-~~~i~~~L~~ 180 (183)
T 3deo_A 165 FGRRIG-LEKVINVLEG 180 (183)
T ss_dssp HHHHHH-HHHHHHHHHT
T ss_pred HHHHcC-HHHHHHHHHH
Confidence 999988 9999999987
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.86 E-value=2.9e-22 Score=183.05 Aligned_cols=132 Identities=27% Similarity=0.389 Sum_probs=102.9
Q ss_pred CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCC
Q 005790 218 CTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGE 297 (677)
Q Consensus 218 ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~ 297 (677)
|+|+ .+|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.+. +
T Consensus 1 G~d~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~--------- 68 (137)
T 3c5r_A 1 GIDP--FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA-L--------- 68 (137)
T ss_dssp ---C--CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-C---------
T ss_pred CCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-c---------
Confidence 4454 578889999999999999999999999999999999999999999999999999999988773 2
Q ss_pred chhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCC
Q 005790 298 TFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDN 377 (677)
Q Consensus 298 tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~ 377 (677)
++.+|..|.||||+|+..+ +.+++++|++ .|++++.+|.
T Consensus 69 ---------------------------------------~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~ 107 (137)
T 3c5r_A 69 ---------------------------------------VNTTGYQNDSPLHDAAKNG-HVDIVKLLLS-YGASRNAVNI 107 (137)
T ss_dssp ---------------------------------------TTCCCGGGCCHHHHHHHTT-CHHHHHHHHH-TTCCTTCCCT
T ss_pred ---------------------------------------ccCcCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCCCCCC
Confidence 4455667788888888877 8888888888 7888888888
Q ss_pred CCCcHHHHHhhCCCCchHHHHHHHHHHcC
Q 005790 378 DGMTTLDLLKQRPQSASSDILIRHLISAG 406 (677)
Q Consensus 378 ~G~TpL~~A~~~~~~~~~~~lv~~Ll~~G 406 (677)
.|.||||+|+..+..+ ++++|.+.+
T Consensus 108 ~g~tpl~~A~~~~~~~----~l~~l~~~~ 132 (137)
T 3c5r_A 108 FGLRPVDYTDDESMKS----LLLLPEKNE 132 (137)
T ss_dssp TSCCGGGGCCCHHHHH----HHSCC----
T ss_pred CCCCHHHHHhhccHHH----HHhhccccc
Confidence 8888888887665544 455554443
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=2.6e-21 Score=176.71 Aligned_cols=124 Identities=25% Similarity=0.302 Sum_probs=112.5
Q ss_pred hhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 005790 192 WEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAY 271 (677)
Q Consensus 192 ~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~ 271 (677)
+..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 85 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK 85 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence 344689999999999999999999999998 7899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHc
Q 005790 272 RGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLAS 327 (677)
Q Consensus 272 ~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~ 327 (677)
.|+.+++++|++.| ++++.+|..|.||||+|+. .+..+++.+|.+
T Consensus 86 ~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~----------~~~~~~l~~l~~ 130 (137)
T 3c5r_A 86 NGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDD----------ESMKSLLLLPEK 130 (137)
T ss_dssp TTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCC----------HHHHHHHSCC--
T ss_pred cCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhh----------ccHHHHHhhccc
Confidence 99999999999998 7799999999999999998 455555555443
No 95
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.84 E-value=8e-21 Score=197.94 Aligned_cols=109 Identities=24% Similarity=0.280 Sum_probs=86.7
Q ss_pred chHHHHHHhcCCHHHHHHHHhcCCCcccc-----CCCCCCcHHHHHHHh---CCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 005790 196 NRAVHAAARGGNLKILKELLENCTDVLTY-----RDKQGSTILHAAAGR---GQVEVVKDLIASFDIINSTDHQGNTPLH 267 (677)
Q Consensus 196 ~t~Lh~A~~~g~~eivk~LL~~ga~~~~~-----~d~~g~TpL~~A~~~---g~~eivk~Ll~~ga~in~~d~~g~tpL~ 267 (677)
.++|+.|+..|+.+.|+.|++.|++++.. .+..|.||||+|+.. |+.+++++|+++|++++..|..|+||||
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh 231 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 231 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHH
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 36799999999999999999999888332 588889999999987 8899999999999999999988999999
Q ss_pred HHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhh
Q 005790 268 IAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305 (677)
Q Consensus 268 ~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~ 305 (677)
+|+..|+.+++++|++.| ++++.+|..|.||||+|+.
T Consensus 232 ~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~ 268 (301)
T 2b0o_E 232 YAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARK 268 (301)
T ss_dssp HHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHH
Confidence 999999999999999887 4455444444444444443
No 96
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.84 E-value=1.4e-20 Score=168.52 Aligned_cols=110 Identities=28% Similarity=0.351 Sum_probs=105.1
Q ss_pred ccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcC
Q 005790 194 MMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRG 273 (677)
Q Consensus 194 ~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g 273 (677)
.+.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~ 84 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 84 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 4579999999999999999999999998 789999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhCCCCccccCCCCCchhhhhhh
Q 005790 274 QPAVVEALILASPSMISVKNTSGETFLHSAVS 305 (677)
Q Consensus 274 ~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~ 305 (677)
+.+++++|+++| ++++.++..|.||||+|..
T Consensus 85 ~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 85 HVSCVKLLLSKG-ADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp CHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCC
T ss_pred CHHHHHHHHHcC-CCCCCcCCCCCCHHHHhCC
Confidence 999999999998 6799999999999999965
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=196.64 Aligned_cols=144 Identities=17% Similarity=0.132 Sum_probs=97.8
Q ss_pred CHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhc---CCHHHHHHHHhcCCC
Q 005790 144 TDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARG---GNLKILKELLENCTD 220 (677)
Q Consensus 144 tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~eivk~LL~~ga~ 220 (677)
++|+.| +..|+.+.++.|++.|++++........ +..|.||||+|+.. |+.+++++|+++|++
T Consensus 153 ~~L~~A-~~~g~~~~v~~ll~~g~d~~~~~~~~~~-------------~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad 218 (301)
T 2b0o_E 153 QRLWTA-ICNRDLLSVLEAFANGQDFGQPLPGPDA-------------QAPEELVLHLAVKVANQASLPLVDFIIQNGGH 218 (301)
T ss_dssp HHHHHH-HHTTCHHHHHHHHHTTCCTTSCEECSSS-------------CSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC
T ss_pred HHHhhh-hhccCHHHHHHHHhcCCcccccCCCccc-------------CCCCccHHHHHHHhcccCcHHHHHHHHhcCCC
Confidence 445555 3556666666666666666542110000 00135777777776 778888888888888
Q ss_pred ccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchh
Q 005790 221 VLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFL 300 (677)
Q Consensus 221 ~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpL 300 (677)
+ +..|..|+||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|++.++. .|.|||
T Consensus 219 v-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpL 290 (301)
T 2b0o_E 219 L-DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPL 290 (301)
T ss_dssp T-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCC
T ss_pred C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChh
Confidence 7 67788888888888888888888888888888888888888888888888888888888887732 578888
Q ss_pred hhhhhcCch
Q 005790 301 HSAVSGFQT 309 (677)
Q Consensus 301 h~A~~~~~~ 309 (677)
|+|+..|+.
T Consensus 291 h~A~~~g~~ 299 (301)
T 2b0o_E 291 HVDYSWVIS 299 (301)
T ss_dssp C--------
T ss_pred HHHHhcCCc
Confidence 888876653
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.84 E-value=1.7e-21 Score=193.35 Aligned_cols=134 Identities=23% Similarity=0.311 Sum_probs=64.7
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhh
Q 005790 226 DKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305 (677)
Q Consensus 226 d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~ 305 (677)
+..|.||||+|+..|+.++|++|++.|++++..|..|.||||+|+..|+.+++++|++.++++
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~----------------- 132 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE----------------- 132 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-----------------
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-----------------
Confidence 334555555555555555555555555555555555555555555555555555555541121
Q ss_pred cCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHH
Q 005790 306 GFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDL 385 (677)
Q Consensus 306 ~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~ 385 (677)
++.+|..|.||||+|+..+ +.++|++|++ .|++++.+|..|.||||+
T Consensus 133 -------------------------------~~~~d~~g~tpL~~A~~~~-~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~ 179 (222)
T 3ehr_A 133 -------------------------------LNQQNKLGDTALHAAAWKG-YADIVQLLLA-KGARTDLRNIEKKLAFDM 179 (222)
T ss_dssp -------------------------------CCCCCTTSCCHHHHHHHHT-CHHHHHHHHH-HTCCSCCCCTTSCCHHHH
T ss_pred -------------------------------ccccCCCCCCHHHHHHHcC-CHHHHHHHHH-cCCCCccccCCCCCHHHH
Confidence 3333444555555555544 5555555555 455555555555555555
Q ss_pred HhhCCCCchHHHHHHHHHHcCCCCCCCc
Q 005790 386 LKQRPQSASSDILIRHLISAGGIFGCQD 413 (677)
Q Consensus 386 A~~~~~~~~~~~lv~~Ll~~Gadin~~d 413 (677)
|+..++.+ +++.|++.|++.+..+
T Consensus 180 A~~~~~~~----~l~~l~~~~~~~~~~~ 203 (222)
T 3ehr_A 180 ATNAACAS----LLKKKQGTDAVRTLSN 203 (222)
T ss_dssp CCSHHHHH----HHC-------------
T ss_pred hcchhHHH----HHHHHhccchhhhccc
Confidence 55544433 4555555555544443
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.83 E-value=5.8e-21 Score=189.49 Aligned_cols=114 Identities=30% Similarity=0.402 Sum_probs=99.3
Q ss_pred hhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhc-CCCCCCCCCCCCcHHHH
Q 005790 190 YKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIAS-FDIINSTDHQGNTPLHI 268 (677)
Q Consensus 190 ~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~-ga~in~~d~~g~tpL~~ 268 (677)
..+..|.||||+|+..|+.++|++|++.|+++ +..|..|+||||+|+..|+.++|++|+++ |++++..|..|.||||+
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA 146 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence 34556789999999999999999999999998 78899999999999999999999999998 99999999999999999
Q ss_pred HHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhhhh
Q 005790 269 AAYRGQPAVVEALILASPSMISVKNTSGETFLHSAVS 305 (677)
Q Consensus 269 A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~ 305 (677)
|+..|+.+++++|++.| ++++.++..|.||||+|+.
T Consensus 147 A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~ 182 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATN 182 (222)
T ss_dssp HHHHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCS
T ss_pred HHHcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcc
Confidence 99999999999999998 4455444444444444443
No 100
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.82 E-value=1.6e-20 Score=189.64 Aligned_cols=142 Identities=22% Similarity=0.191 Sum_probs=124.9
Q ss_pred cCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhh
Q 005790 105 AGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIE 184 (677)
Q Consensus 105 d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~ 184 (677)
+..|.||||+||..|+.++|++|++ ++ +++..+..|.||||+|| ..|+.++|++|+++|++++..+...
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~-~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~ga~~~~~~~~~-------- 110 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DR-DVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADLDHRDMRG-------- 110 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TC-CTTCBCTTSCBHHHHHH-HHTCHHHHHHHHHTTCCTTCCCSSS--------
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CC-CCCCcCCCCCCHHHHHH-HCCCHHHHHHHHHcCCCCCcCCCCC--------
Confidence 4568899999999999999999999 65 67788999999999996 6699999999999999998776332
Q ss_pred cchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCc
Q 005790 185 EIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNT 264 (677)
Q Consensus 185 ~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~t 264 (677)
|.||||+|+..|+.++|++|+++|+++ +..|..|.||||+|+..++ ...+.|
T Consensus 111 ----------g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~-----------------~~~~~~ 162 (244)
T 3ui2_A 111 ----------GLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK-----------------TTPKGN 162 (244)
T ss_dssp ----------CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT-----------------TCCCSS
T ss_pred ----------CCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh-----------------ccCCCC
Confidence 469999999999999999999999999 7899999999999986332 245789
Q ss_pred HHHHHHHcCCHHHHHHHHHhC
Q 005790 265 PLHIAAYRGQPAVVEALILAS 285 (677)
Q Consensus 265 pL~~A~~~g~~~iv~~LL~~g 285 (677)
|||+|+..|+.+++++|++.+
T Consensus 163 ~l~~a~~~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 163 PMQFGRRIGLEKVINVLEGQV 183 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhc
Confidence 999999999999999999864
No 101
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.82 E-value=1.9e-20 Score=180.18 Aligned_cols=142 Identities=22% Similarity=0.189 Sum_probs=123.3
Q ss_pred hcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhh
Q 005790 104 RAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHI 183 (677)
Q Consensus 104 ~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~ 183 (677)
.+..|.||||+|+..|+.++|++|++ ++ +++..+..|.||||+|| ..|+.+++++|+++|++++..+...
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~-~~~~~d~~g~t~L~~A~-~~~~~~~v~~Ll~~ga~~~~~~~~~------- 109 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DR-DVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADLDHRDMRG------- 109 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TS-CTTCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCCTTCCCSSS-------
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cC-CCCCcCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCCcCCCCC-------
Confidence 35578999999999999999999999 54 67788999999999996 6699999999999999998766222
Q ss_pred hcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCC
Q 005790 184 EEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGN 263 (677)
Q Consensus 184 ~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~ 263 (677)
|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++. ..+.
T Consensus 110 -----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~-----------------~~~~ 160 (183)
T 3deo_A 110 -----------GLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT-----------------TPKG 160 (183)
T ss_dssp -----------SCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT-----------------CCCC
T ss_pred -----------CCCHHHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC-----------------cccc
Confidence 469999999999999999999999998 78999999999999975433 3467
Q ss_pred cHHHHHHHcCCHHHHHHHHHh
Q 005790 264 TPLHIAAYRGQPAVVEALILA 284 (677)
Q Consensus 264 tpL~~A~~~g~~~iv~~LL~~ 284 (677)
+||++|+..|+.+++++|.++
T Consensus 161 ~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 161 NPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp SHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHcCHHHHHHHHHHh
Confidence 999999999999999999754
No 102
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.81 E-value=3.7e-20 Score=165.79 Aligned_cols=110 Identities=22% Similarity=0.177 Sum_probs=82.2
Q ss_pred CCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCC
Q 005790 140 EYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCT 219 (677)
Q Consensus 140 ~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga 219 (677)
..|.||||+|+ ..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|+
T Consensus 5 ~~~~~~l~~A~-~~~~~~~v~~ll~~~~~~~~~~~~-------------------g~t~L~~A~~~~~~~~v~~Ll~~g~ 64 (123)
T 3aaa_C 5 SMCDKEFMWAL-KNGDLDEVKDYVAKGEDVNRTLEG-------------------GRKPLHYAADCGQLEILEFLLLKGA 64 (123)
T ss_dssp --CHHHHHHHH-HTTCHHHHHHHHHTTCCTTSCCTT-------------------SSCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred cccchHHHHHH-HcCCHHHHHHHHHcCCCcCccCCC-------------------CCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 45566777764 557777777777777766654433 3577777777788888888888888
Q ss_pred CccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 005790 220 DVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAA 270 (677)
Q Consensus 220 ~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~ 270 (677)
++ +..|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|.
T Consensus 65 ~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 65 DI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp CT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred CC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 77 677888888888888888888888888888888888888888888884
No 103
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=1.2e-19 Score=193.83 Aligned_cols=161 Identities=19% Similarity=0.241 Sum_probs=98.6
Q ss_pred cchHHHHHHhc-CCHHHHHHHHhcCCCccccCC--CCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 005790 195 MNRAVHAAARG-GNLKILKELLENCTDVLTYRD--KQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAY 271 (677)
Q Consensus 195 ~~t~Lh~A~~~-g~~eivk~LL~~ga~~~~~~d--~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~ 271 (677)
+.|+||.|+.. |+.++|++||++|+++ +..+ ..|.||||+|+..|+.++|++|+++|++++..|..|+||||+|+.
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~ 277 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 45788888888 8888888888888888 5566 788888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHhCCCCccccCCCCCchhhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHH
Q 005790 272 RGQPAVVEALILASPSMISVKNTSGETFLHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMA 351 (677)
Q Consensus 272 ~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A 351 (677)
.|+.+++++||++| ++ ++.+|..|.||||+|
T Consensus 278 ~g~~~~v~~LL~~G-ad------------------------------------------------~~~~d~~G~TpL~~A 308 (368)
T 3jue_A 278 LGHTGLACLFLKRG-AD------------------------------------------------LGARDSEGRDPLTIA 308 (368)
T ss_dssp HTCHHHHHHHHHTT-CC------------------------------------------------TTCCCTTSCCHHHHH
T ss_pred cCcHHHHHHHHHCc-CC------------------------------------------------CCCcCCCCCCHHHHH
Confidence 88888888888887 33 455566777777777
Q ss_pred HhCCCcHHHHHHHhhCCC---CCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCC
Q 005790 352 ITGNVHLELVQLLMSAPS---INVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIF 409 (677)
Q Consensus 352 ~~~~~~~eiv~lLL~~~G---adin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadi 409 (677)
+..+ +.+++++|+. .+ ++....+..+.|+|+++........ .-.+.|...+.++
T Consensus 309 ~~~g-~~~iv~lLl~-~~~~~~~~~~~~~~~~t~l~i~~~~~~~~~--~~~ekl~r~~~~~ 365 (368)
T 3jue_A 309 META-NADIVTLLRL-AKMREAEAAQGQAGDETYLDIFRDFSLMAS--DDPEKLSRRSHDL 365 (368)
T ss_dssp HHTT-CHHHHHHHHH-HHC------------------------------------------
T ss_pred HHCC-CHHHHHHHHH-cCCCcccccccCCCCCCHHHHHHHHHhhcC--CCHHHHHhcCCCc
Confidence 7766 7777777776 43 3333445566777777665543221 1234444555444
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.80 E-value=1.9e-19 Score=185.36 Aligned_cols=207 Identities=18% Similarity=0.125 Sum_probs=149.5
Q ss_pred ccccccccHHHHHhhchHHHHHHHHhhhhcCCC-CchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCH
Q 005790 67 TVWDDEEQFDDVAKCRSKVARKLFLECKSKNGK-NSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTD 145 (677)
Q Consensus 67 ~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~-~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tp 145 (677)
.+.-+.+.++.+...|+..+..++..+...... .+. .+.... .....-..+++................++
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~----~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~ 133 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPN----PGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHS 133 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCC----TTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCC----CCCCHH----HHHHHHHHHHHHhhcccccccccchhhhh
Confidence 344466788888899998888887653322111 111 111111 11111122343333322222222223467
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhc---CCHHHHHHHHhcCCCcc
Q 005790 146 IFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARG---GNLKILKELLENCTDVL 222 (677)
Q Consensus 146 L~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~eivk~LL~~ga~~~ 222 (677)
|+.| +..|+.+.++.|++.|++++.... ....+..|.||||+|+.. |+.+++++|+++|+++
T Consensus 134 l~~a-~~~~d~~~~~~ll~~g~~~~~~~~-------------l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i- 198 (278)
T 1dcq_A 134 LCEA-VKTRDIFGLLQAYADGVDLTEKIP-------------LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL- 198 (278)
T ss_dssp HHHH-HHTTCHHHHHHHHHTTCCTTSBCC-------------CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-
T ss_pred hhhH-hhhcccHHHHHHHHhhcchhhhcc-------------ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-
Confidence 7776 588999999999999998764320 011233468999999999 8999999999999999
Q ss_pred ccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhh
Q 005790 223 TYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHS 302 (677)
Q Consensus 223 ~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~ 302 (677)
+.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+ +.+++|.
T Consensus 199 n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga---------~~~~~~~ 269 (278)
T 1dcq_A 199 DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS---------GRFNSHV 269 (278)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT---------TCCCSSC
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC---------CCCCcce
Confidence 8899999999999999999999999999999999999999999999999999999999999985 3466666
Q ss_pred hhh
Q 005790 303 AVS 305 (677)
Q Consensus 303 A~~ 305 (677)
++.
T Consensus 270 ~v~ 272 (278)
T 1dcq_A 270 HVE 272 (278)
T ss_dssp CCC
T ss_pred eee
Confidence 665
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=1.5e-19 Score=201.73 Aligned_cols=87 Identities=23% Similarity=0.287 Sum_probs=44.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCccccC------CCCCCcHHHHHHH---hCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 005790 198 AVHAAARGGNLKILKELLENCTDVLTYR------DKQGSTILHAAAG---RGQVEVVKDLIASFDIINSTDHQGNTPLHI 268 (677)
Q Consensus 198 ~Lh~A~~~g~~eivk~LL~~ga~~~~~~------d~~g~TpL~~A~~---~g~~eivk~Ll~~ga~in~~d~~g~tpL~~ 268 (677)
.||.|+..|+.++|+.||+.|+++ +.. +..|.||||+||. .|+.++|++|+++|+++|..|..|+||||+
T Consensus 135 ~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~ 213 (497)
T 3lvq_E 135 RLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213 (497)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred HHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 455555555555555555555554 222 4445555555533 455555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHhC
Q 005790 269 AAYRGQPAVVEALILAS 285 (677)
Q Consensus 269 A~~~g~~~iv~~LL~~g 285 (677)
|+..|+.+++++||++|
T Consensus 214 A~~~g~~~~v~~Ll~~g 230 (497)
T 3lvq_E 214 AALYNQPDCLKLLLKGR 230 (497)
T ss_dssp HTTTTCHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHcC
Confidence 55555555555555544
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.80 E-value=4e-19 Score=182.92 Aligned_cols=194 Identities=13% Similarity=0.009 Sum_probs=142.3
Q ss_pred ccccCcHHHHHHHcCCHHHHHHHHHhcCCchhhhhhHHhhhhccccccccccHHHHHhhchHHHHHHHHhhhhcCCCCch
Q 005790 23 QWWYASPIDWAAANGHYDLVRELLRIDGNHLIKLTSLRRIRRLETVWDDEEQFDDVAKCRSKVARKLFLECKSKNGKNSL 102 (677)
Q Consensus 23 ~~~g~TpL~~Aa~~G~~diV~~LL~~ga~~n~~~~~~~~~~~l~~~~~~~~~l~~A~~~~~~~v~~lLl~~~~~~g~~~~ 102 (677)
+-|+.++|+++...|+..+.+++...-..... ......... .........+++... ......
T Consensus 63 d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~------------~kP~~~s~~---~~~~~fI~aKYl~~~---f~~~~~ 124 (278)
T 1dcq_A 63 DVLGTSELLLAKNIGNAGFNEIMECCLPSEDP------------VKPNPGSDM---IARKDYITAKYMERR---YARKKH 124 (278)
T ss_dssp SCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSC------------CSCCTTCCH---HHHHHHHHHHHTTCT---TSCCCS
T ss_pred CCCCHHHHHHHHHcCcHHHHHHHHhhCChhhc------------CCCCCCCCH---HHHHHHHHHHHHHhh---cccccc
Confidence 33578999999999999888876543221100 000000011 111111222232221 111111
Q ss_pred hhcCCCChHHHHHHHcCCHHHHHHHHHcCCCc-----cccCCCCCCCHHHHHHHhc--CCHHHHHHHHhcCCCccccccc
Q 005790 103 IRAGYGGWLLYTAASAGDLGFVKQLLDKNPLL-----VFGEGEYGVTDIFYAAARS--KNCDVFRLIYDFAVSPRFLTAK 175 (677)
Q Consensus 103 ~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~-----~~~~~~~g~tpL~~AA~~~--g~~evv~lLl~~Gad~~~~~~~ 175 (677)
.......++|+.|+..|+.+.++.+++.|+.. ++..+..|.||||+||... |+.+++++|+++|++++..+..
T Consensus 125 ~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~ 204 (278)
T 1dcq_A 125 ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK 204 (278)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTT
T ss_pred cccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCC
Confidence 12223457899999999999999999999864 3345788999999997443 8999999999999999877654
Q ss_pred CCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 005790 176 GGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDI 254 (677)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~ 254 (677)
|+||||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 205 -------------------g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 205 -------------------GSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp -------------------CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred -------------------CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 479999999999999999999999999 88999999999999999999999999999986
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.79 E-value=1.6e-19 Score=192.75 Aligned_cols=166 Identities=18% Similarity=0.195 Sum_probs=113.0
Q ss_pred CCCCCCcHHHHHHHh-CCHHHHHHHHhcCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhh
Q 005790 225 RDKQGSTILHAAAGR-GQVEVVKDLIASFDIINSTD--HQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLH 301 (677)
Q Consensus 225 ~d~~g~TpL~~A~~~-g~~eivk~Ll~~ga~in~~d--~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh 301 (677)
.+..+.|+||+|+.. ++++++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|+ +
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Ga-d------------- 260 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA-N------------- 260 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC-C-------------
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCC-C-------------
Confidence 445667899999999 99999999999999999998 889999999999999999999999883 2
Q ss_pred hhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCc
Q 005790 302 SAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMT 381 (677)
Q Consensus 302 ~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~T 381 (677)
+|.+|..|.||||+|+..+ +.++|++||+ .|+|++.+|..|.|
T Consensus 261 -----------------------------------vn~~d~~G~TpLh~A~~~g-~~~~v~~LL~-~Gad~~~~d~~G~T 303 (368)
T 3jue_A 261 -----------------------------------VNQADSAGRGPLHHATILG-HTGLACLFLK-RGADLGARDSEGRD 303 (368)
T ss_dssp -----------------------------------TTCCCTTSCCHHHHHHHHT-CHHHHHHHHH-TTCCTTCCCTTSCC
T ss_pred -----------------------------------CCCCCCCCCCHHHHHHHcC-cHHHHHHHHH-CcCCCCCcCCCCCC
Confidence 5667888999999999988 9999999999 99999999999999
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHcC---CCCCCCcccCCchHHHHHHHhCCCCCCCCccchhhHHHHHHcCCCCC
Q 005790 382 TLDLLKQRPQSASSDILIRHLISAG---GIFGCQDYSARRAIASHIKMLGNGSSPGTSFRISDTEIFLYTGIDVS 453 (677)
Q Consensus 382 pL~~A~~~~~~~~~~~lv~~Ll~~G---adin~~d~~G~T~L~~al~~~~~~~~~~~~~~~~~v~~LL~~Gad~~ 453 (677)
|||+|+..++.+ ++++|+.+| ++....+..+.|++..+-..... ..+..+.|+..|.+++
T Consensus 304 pL~~A~~~g~~~----iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~~--------~~~~~ekl~r~~~~~~ 366 (368)
T 3jue_A 304 PLTIAMETANAD----IVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLM--------ASDDPEKLSRRSHDLH 366 (368)
T ss_dssp HHHHHHHTTCHH----HHHHHHHHHC-------------------------------------------------
T ss_pred HHHHHHHCCCHH----HHHHHHHcCCCcccccccCCCCCCHHHHHHHHHhh--------cCCCHHHHHhcCCCcC
Confidence 999999999988 566666655 44455567778887665443221 1234566777776654
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=4e-19 Score=198.29 Aligned_cols=135 Identities=21% Similarity=0.191 Sum_probs=112.1
Q ss_pred CCcHHHHHHHhCCHHHHHHHHhcCCCCCCC------CCCCCcHHHHHHH---cCCHHHHHHHHHhCCCCccccCCCCCch
Q 005790 229 GSTILHAAAGRGQVEVVKDLIASFDIINST------DHQGNTPLHIAAY---RGQPAVVEALILASPSMISVKNTSGETF 299 (677)
Q Consensus 229 g~TpL~~A~~~g~~eivk~Ll~~ga~in~~------d~~g~tpL~~A~~---~g~~~iv~~LL~~g~~~~~~~~~~g~tp 299 (677)
..+.||.|+..|+.++|+.|+++|+++|.. +..|.||||+|+. .|+.+++++||++|+ +
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga-~----------- 199 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG-H----------- 199 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSC-C-----------
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCC-C-----------
Confidence 347899999999999999999999999987 8889999999976 899999999999883 3
Q ss_pred hhhhhhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCC
Q 005790 300 LHSAVSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDG 379 (677)
Q Consensus 300 Lh~A~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G 379 (677)
+|.+|..|.||||+|+..| +.++|++||+ .|+|+|.+|..|
T Consensus 200 -------------------------------------vn~~d~~g~TpLh~A~~~g-~~~~v~~Ll~-~ga~~~~~d~~g 240 (497)
T 3lvq_E 200 -------------------------------------LDAKAADGNTALHYAALYN-QPDCLKLLLK-GRALVGTVNEAG 240 (497)
T ss_dssp -------------------------------------TTCCCSSSCCHHHHHTTTT-CHHHHHHHHH-TCCCCSCCCTTC
T ss_pred -------------------------------------CCccCCCCCcHHHHHHHcC-CHHHHHHHHH-cCCCCCCcCCCC
Confidence 5667788999999999988 9999999999 899999999999
Q ss_pred CcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHHHH
Q 005790 380 MTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIASHI 424 (677)
Q Consensus 380 ~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~al 424 (677)
+||||+|+..++.+ ++++|+++|++++. +|+|.+.
T Consensus 241 ~tpl~~A~~~~~~~----~~~~Ll~~ga~~~~------~~~h~~~ 275 (497)
T 3lvq_E 241 ETALDIARKKHHKE----CEELLEQAQAGTFA------FPLHVDY 275 (497)
T ss_dssp CCHHHHHHHTTCHH----HHHHHHHTCC-----------------
T ss_pred CCHHHHHHHcCCHH----HHHHHHHhCCCCCC------Ccceeec
Confidence 99999999999977 78999999999987 5666544
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.78 E-value=9.5e-19 Score=148.43 Aligned_cols=91 Identities=44% Similarity=0.597 Sum_probs=87.7
Q ss_pred cchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCC
Q 005790 195 MNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQ 274 (677)
Q Consensus 195 ~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~ 274 (677)
|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 579999999999999999999999998 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 005790 275 PAVVEALILASP 286 (677)
Q Consensus 275 ~~iv~~LL~~g~ 286 (677)
.+++++|+++|+
T Consensus 81 ~~~~~~Ll~~ga 92 (93)
T 1n0q_A 81 LEVVKLLLEAGA 92 (93)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 999999999884
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.76 E-value=1.2e-18 Score=153.90 Aligned_cols=109 Identities=36% Similarity=0.525 Sum_probs=87.1
Q ss_pred cCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhhh
Q 005790 224 YRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHSA 303 (677)
Q Consensus 224 ~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~A 303 (677)
++|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.|+ +
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~--------------- 67 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA-D--------------- 67 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC-C---------------
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC-C---------------
Confidence 467788888888888888888888888888888888888888888888888888888887763 2
Q ss_pred hhcCchHHHHHhhHHHHHHHHHHcccccchhhhhhccCCCCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHH
Q 005790 304 VSGFQTYAFRRLDRQVKLMKQLASGQIFNMEDIINAKNNDGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTL 383 (677)
Q Consensus 304 ~~~~~~~~~~~L~~~~eiv~~Ll~~~~~~~~~~in~~d~~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL 383 (677)
++.+|..|.||||+|+..+ +.+++++|++ .|+|+|.++..|.||-
T Consensus 68 ---------------------------------~~~~d~~g~tpl~~A~~~~-~~~~~~~Ll~-~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 68 ---------------------------------VNARSKDGNTPEHLAKKNG-HHEIVKLLDA-KGADVNARSWGSSHHH 112 (115)
T ss_dssp ---------------------------------TTCCCTTCCCTTHHHHTTT-CHHHHHHHHT-TSSSHHHHSCCCC---
T ss_pred ---------------------------------CcccCCCCCCHHHHHHHCC-CHHHHHHHHH-cCCCCCcCCccccccc
Confidence 4555677888888888877 8888888888 8888888888888763
No 111
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.76 E-value=2.4e-18 Score=145.88 Aligned_cols=93 Identities=28% Similarity=0.466 Sum_probs=85.9
Q ss_pred CCchHHHHHHhCCCcHHHHHHHhhCCCCCccccCCCCCcHHHHHhhCCCCchHHHHHHHHHHcCCCCCCCcccCCchHHH
Q 005790 343 DGRTALHMAITGNVHLELVQLLMSAPSINVNVRDNDGMTTLDLLKQRPQSASSDILIRHLISAGGIFGCQDYSARRAIAS 422 (677)
Q Consensus 343 ~G~TpLh~A~~~~~~~eiv~lLL~~~Gadin~~d~~G~TpL~~A~~~~~~~~~~~lv~~Ll~~Gadin~~d~~G~T~L~~ 422 (677)
+|+||||+|+..+ +.+++++|++ .|+++|.+|..|+||||+|+..++.+ ++++|+++|++++.+|..|+||||+
T Consensus 1 ~g~t~L~~A~~~~-~~~~v~~Ll~-~g~~~n~~d~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~t~l~~ 74 (93)
T 1n0q_A 1 NGRTPLHLAARNG-HLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLE----VVKLLLEAGADVNAKDKNGRTPLHL 74 (93)
T ss_dssp --CCHHHHHHHHT-CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCCcHHHHHHHcC-CHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCccCCCCCCHHHH
Confidence 4899999999988 9999999999 99999999999999999999999987 7899999999999999999999999
Q ss_pred HHHHhCCCCCCCCccchhhHHHHHHcCCC
Q 005790 423 HIKMLGNGSSPGTSFRISDTEIFLYTGID 451 (677)
Q Consensus 423 al~~~~~~~~~~~~~~~~~v~~LL~~Gad 451 (677)
|+.... .+++++|+++||+
T Consensus 75 A~~~~~----------~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 75 AARNGH----------LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHTTC----------HHHHHHHHHTTCC
T ss_pred HHHcCC----------HHHHHHHHHcCCC
Confidence 988533 8899999999986
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.74 E-value=1.6e-18 Score=153.05 Aligned_cols=109 Identities=31% Similarity=0.415 Sum_probs=100.5
Q ss_pred hhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 005790 190 YKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIA 269 (677)
Q Consensus 190 ~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A 269 (677)
+++..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA 82 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 34556789999999999999999999999998 78899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhCCCCccccCCCCCchh
Q 005790 270 AYRGQPAVVEALILASPSMISVKNTSGETFL 300 (677)
Q Consensus 270 ~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpL 300 (677)
+..|+.+++++|+++| ++++..+..|.+|-
T Consensus 83 ~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKG-ADVNARSWGSSHHH 112 (115)
T ss_dssp HTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred HHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence 9999999999999999 78999999988873
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.65 E-value=5.1e-16 Score=136.03 Aligned_cols=91 Identities=33% Similarity=0.406 Sum_probs=84.0
Q ss_pred hhhhccchHHHHHHhcCCHHHHHHHHhcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 005790 190 YKWEMMNRAVHAAARGGNLKILKELLENCTDVLTYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIA 269 (677)
Q Consensus 190 ~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~~~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A 269 (677)
..+..|.|+||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence 34456789999999999999999999999998 77899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHH
Q 005790 270 AYRGQPAVVEAL 281 (677)
Q Consensus 270 ~~~g~~~iv~~L 281 (677)
+..|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 999999999987
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.57 E-value=6e-15 Score=129.12 Aligned_cols=92 Identities=26% Similarity=0.286 Sum_probs=81.9
Q ss_pred ccCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCchhhh
Q 005790 223 TYRDKQGSTILHAAAGRGQVEVVKDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALILASPSMISVKNTSGETFLHS 302 (677)
Q Consensus 223 ~~~d~~g~TpL~~A~~~g~~eivk~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~~g~~~~~~~~~~g~tpLh~ 302 (677)
...+.+|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTAFDI 96 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCcHHHH
Confidence 446788999999999999999999999999999999999999999999999999999999998 7799999999999999
Q ss_pred hhhcCchHHHHHh
Q 005790 303 AVSGFQTYAFRRL 315 (677)
Q Consensus 303 A~~~~~~~~~~~L 315 (677)
|+..++.++++.|
T Consensus 97 A~~~~~~~~~~~L 109 (110)
T 2zgd_A 97 SIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHh
Confidence 9997666655544
No 115
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=55.16 E-value=6.6 Score=42.73 Aligned_cols=101 Identities=11% Similarity=0.088 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCCcccccccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHH----HHHhcCCCccccCCCCCC-
Q 005790 156 CDVFRLIYDFAVSPRFLTAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILK----ELLENCTDVLTYRDKQGS- 230 (677)
Q Consensus 156 ~evv~lLl~~Gad~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk----~LL~~ga~~~~~~d~~g~- 230 (677)
.++++-+.+.|..||.... ++.|...+..|..+-+. .+.+.|..+ |..-.
T Consensus 90 ~~lf~~M~~~G~~Pd~~ty---------------------n~lI~~~~~~g~~~~A~~l~~~M~~~g~~P----d~~tyn 144 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATF---------------------TNGARLAVAKDDPEMAFDMVKQMKAFGIQP----RLRSYG 144 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHH---------------------HHHHHHHHHHTCHHHHHHHHHHHHHTTCCC----CHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHH---------------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----ccceeh
Confidence 3577777888887775432 35677788888865444 444556543 11122
Q ss_pred cHHHHHHHhCCHHHH----HHHHhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 005790 231 TILHAAAGRGQVEVV----KDLIASFDIINSTDHQGNTPLHIAAYRGQPAVVEALIL 283 (677)
Q Consensus 231 TpL~~A~~~g~~eiv----k~Ll~~ga~in~~d~~g~tpL~~A~~~g~~~iv~~LL~ 283 (677)
+.|...+..|..+-+ +.+.+.|..++.... .+.|...++.|+.+-+..+++
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty--~~Li~~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL--AALLKVSMDTKNADKVYKTLQ 199 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHhhCCCHHHHHHHHH
Confidence 445566778886544 445567877765432 245666678888876666654
No 116
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=46.39 E-value=39 Score=36.54 Aligned_cols=97 Identities=9% Similarity=-0.027 Sum_probs=60.3
Q ss_pred CCCCchhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHH----HHHHHHhcCCCcccc
Q 005790 97 NGKNSLIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCD----VFRLIYDFAVSPRFL 172 (677)
Q Consensus 97 ~g~~~~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~e----vv~lLl~~Gad~~~~ 172 (677)
.|..++... ..+.|...+..|+.+-+..|++.-...-...+..-++.|+.++++.|..+ +++.+.+.|..|+..
T Consensus 99 ~G~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 99 DKVVPNEAT--FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp TTCCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred hCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 666665432 23567788899998877777654110001123334567888888989875 455556678877644
Q ss_pred cccCCcchhhhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHh
Q 005790 173 TAKGGELEEHIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLE 216 (677)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~ 216 (677)
.- .+.|...+..|..+-+..+++
T Consensus 177 ty---------------------~~Li~~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 177 EL---------------------AALLKVSMDTKNADKVYKTLQ 199 (501)
T ss_dssp HH---------------------HHHHHHHHHTTCHHHHHHHHH
T ss_pred HH---------------------HHHHHHHhhCCCHHHHHHHHH
Confidence 32 356777788888765555554
No 117
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=33.27 E-value=1e+02 Score=28.15 Aligned_cols=22 Identities=18% Similarity=-0.058 Sum_probs=11.4
Q ss_pred cccccHHHHHhhchHHHHHHHH
Q 005790 70 DDEEQFDDVAKCRSKVARKLFL 91 (677)
Q Consensus 70 ~~~~~l~~A~~~~~~~v~~lLl 91 (677)
+..+-|..|+..|+.++..-+.
T Consensus 7 D~~~rF~LAL~lg~l~~A~e~a 28 (177)
T 3mkq_B 7 DPHIRFDLALEYGNLDAALDEA 28 (177)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHhcCCHHHHHHHH
Confidence 3444555566555555554443
No 118
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=27.41 E-value=1.2e+02 Score=30.68 Aligned_cols=168 Identities=13% Similarity=0.126 Sum_probs=72.8
Q ss_pred hhhcCCCChHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCcccccccCCcchh
Q 005790 102 LIRAGYGGWLLYTAASAGDLGFVKQLLDKNPLLVFGEGEYGVTDIFYAAARSKNCDVFRLIYDFAVSPRFLTAKGGELEE 181 (677)
Q Consensus 102 ~~~d~~G~t~L~~Aa~~g~~eivk~LL~~g~~~~~~~~~~g~tpL~~AA~~~g~~evv~lLl~~Gad~~~~~~~~~~~~~ 181 (677)
...|.+|...+......++.+....+++.-... +.-.+....-..+++.+++...... .. .-+.+
T Consensus 67 L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~-----------~~~l~~~~~G~rvvQk~le~~~~~~-~~---~i~~e 131 (351)
T 3gvo_A 67 LMTDVFGNYVIQKFFEFGSLDQKLALATRIRGH-----------VLPLALQMYGCRVIQKALESISSDQ-QS---EMVKE 131 (351)
T ss_dssp HHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTC-----------HHHHHTSTTHHHHHHHHHHHSCHHH-HH---HHHGG
T ss_pred HHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhh-----------HHHHhhCHHhHHHHHHHHHhCCHHH-HH---HHHHH
Confidence 345667777777777777777766666542100 0111111112234444444432110 00 00001
Q ss_pred hhhcchhhhhhhccchHHHHHHhcCCHHHHHHHHhcCCC-c-cccCCCCCCcHHHHHHHhCCHHHHHHHHhc---CCCCC
Q 005790 182 HIEEIPSVYKWEMMNRAVHAAARGGNLKILKELLENCTD-V-LTYRDKQGSTILHAAAGRGQVEVVKDLIAS---FDIIN 256 (677)
Q Consensus 182 ~~~~~~~~~~~~~~~t~Lh~A~~~g~~eivk~LL~~ga~-~-~~~~d~~g~TpL~~A~~~g~~eivk~Ll~~---ga~in 256 (677)
..........+..|+..+......+..+..+.+++.-.. + .-..+..|...+..+......+-...+++. ....-
T Consensus 132 l~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L 211 (351)
T 3gvo_A 132 LDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQL 211 (351)
T ss_dssp GTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHH
T ss_pred hhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhc
Confidence 111112223344445555555444443333333332111 0 012234455555555554443322222221 11112
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 005790 257 STDHQGNTPLHIAAYRGQPAVVEALILA 284 (677)
Q Consensus 257 ~~d~~g~tpL~~A~~~g~~~iv~~LL~~ 284 (677)
..|..|+-.+..+...+..+..+.+++.
T Consensus 212 ~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~ 239 (351)
T 3gvo_A 212 VQDQYGNYVIQHVLEHGRPEDKSKIVSE 239 (351)
T ss_dssp HTSTTHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHhCchhhHHHHHHH
Confidence 3466777777777777777766666653
No 119
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=24.16 E-value=48 Score=21.91 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=16.2
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 005790 30 IDWAAANGHYDLVRELLR 47 (677)
Q Consensus 30 L~~Aa~~G~~diV~~LL~ 47 (677)
++.||..|+++.|+.|-.
T Consensus 17 iyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 789999999999999865
Done!