BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005792
(677 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S24|A Chain A, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|B Chain B, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|C Chain C, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|D Chain D, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|E Chain E, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|G Chain G, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|F Chain F, Crystal Structure Of Human Mrna Guanylyltransferase
Length = 347
Score = 158 bits (400), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 176/343 (51%), Gaps = 48/343 (13%)
Query: 329 CYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDG--- 385
C+Q F G FPG+ PVS++ N++LL + Y +WKADGTRYMML IDG
Sbjct: 29 CHQ-----FCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKVSWKADGTRYMML--IDGTNE 81
Query: 386 CYLIDRCFN-FRRVQMRFPCRNSNEGLGEKTHHF--TLLDGEMIIDKLPDSRRQERRYLI 442
++IDR + F + FP R + H TLLDGEMIID++ + + RYLI
Sbjct: 82 VFMIDRDNSVFHVSNLEFPFRK------DLRMHLSNTLLDGEMIIDRV--NGQAVPRYLI 133
Query: 443 YDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDF 502
YD++ N V + F R + +E+E+I PR+ + + EPF VR K F
Sbjct: 134 YDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQ------EPFSVRNKPF 187
Query: 503 WLLSTVNKLLK-EFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVT 561
+ + T KLL+ F ++SH+ DGL+FQ Y P + +LKWK +NSVDF ++T
Sbjct: 188 FDICTSRKLLEGNFAKEVSHEMDGLIFQP-TGKYKPGRCDDILKWKPPSLNSVDFRLKIT 246
Query: 562 --------DDDRQLLYV--FERGKKKLMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWK 611
+ LLYV +ER ++ +E Y KIIEC ++ + W
Sbjct: 247 RMGGEGLLPQNVGLLYVGGYERPFAQIK-------VTKELKQYDNKIIECKFENNS--WV 297
Query: 612 CMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQEIIRL 654
MR RTDKS PN NT V SI + +T+E+L I L
Sbjct: 298 FMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDRCTAL 340
>pdb|3RTX|A Chain A, Crystal Structure Of Mammalian Capping Enzyme (Mce1) And
Pol Ii Ctd Complex
pdb|3RTX|B Chain B, Crystal Structure Of Mammalian Capping Enzyme (Mce1) And
Pol Ii Ctd Complex
Length = 343
Score = 158 bits (400), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 175/337 (51%), Gaps = 48/337 (14%)
Query: 329 CYQTLKLNFGGRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDG--- 385
C+Q F G FPG+ PVS++ N++LL Q+ Y +WKADGTRYMML IDG
Sbjct: 33 CHQ-----FCGWEGSGFPGAQPVSMDKQNIRLLEQKPYKVSWKADGTRYMML--IDGTNE 85
Query: 386 CYLIDRCFN-FRRVQMRFPCRNSNEGLGEKTHHF--TLLDGEMIIDKLPDSRRQERRYLI 442
++IDR + F + FP R + H TLLDGEMIIDK+ + + RYLI
Sbjct: 86 VFMIDRDNSVFHVSNLEFPFRK------DLRMHLSNTLLDGEMIIDKV--NGQAVPRYLI 137
Query: 443 YDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDF 502
YD++ N V + F R + +E+E+I PR+ + + EPF VR K F
Sbjct: 138 YDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLIDKTQ------EPFSVRPKQF 191
Query: 503 WLLSTVNKLLK-EFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVT 561
+ ++ KLL+ F ++SH+ DGL+FQ Y P + +LKWK +NSVDF ++T
Sbjct: 192 FDINISRKLLEGNFAKEVSHEMDGLIFQPIGK-YKPGRCDDILKWKPPSLNSVDFRLKIT 250
Query: 562 --------DDDRQLLYV--FERGKKKLMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWK 611
+ LLYV +ER ++ +E Y KIIEC ++ + W
Sbjct: 251 RMGGEGLLPQNVGLLYVGGYERPFAQIK-------VTKELKQYDNKIIECKFENNS--WV 301
Query: 612 CMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEI 648
MR R DKS PN NT V SI + +T+E+L I
Sbjct: 302 FMRQRIDKSFPNAYNTAMAVCNSISNPVTKEMLFEFI 338
>pdb|2C46|A Chain A, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|B Chain B, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|C Chain C, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|D Chain D, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
Length = 241
Score = 151 bits (382), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 114/190 (60%), Gaps = 2/190 (1%)
Query: 70 DQYYQNKNYKSYDRNKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQ 129
D +N ++S NK+PP WL+CP GQ + G +P K L ++ + R+
Sbjct: 12 DLGTENLYFQSMAHNKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSM 71
Query: 130 VIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYE 189
+ + L+ L K+GL++DLTNT+R+Y +D++KEGIK++K+QCKG P + F+
Sbjct: 72 LSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRL 131
Query: 190 VTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKN 249
+F +++ + I VHCTHG NRTG++I FL+ S+ A+ FA+ RPPGIYK
Sbjct: 132 CERF--NERNPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKG 189
Query: 250 EYIEALYTFY 259
+Y++ L+ Y
Sbjct: 190 DYLKELFRRY 199
>pdb|1I9S|A Chain A, Crystal Structure Of The Rna Triphosphatase Domain Of
Mouse Mrna Capping Enzyme
Length = 210
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 114/192 (59%), Gaps = 3/192 (1%)
Query: 84 NKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGL 143
NK+PP WL+CP GQ + G +P K L ++ + R+ + + L+ L K+ L
Sbjct: 4 NKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVKMSL 63
Query: 144 VIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKY 203
++DLTNT+R+Y +D++KEGIK++K+QCKG P + F+ +F ++ +
Sbjct: 64 LVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERF--NERSPPEL 121
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKR 263
I VHCTHG NRTG++I FL+ S+ A+ FA+ RPPGIYK +Y++ L+ Y +
Sbjct: 122 IGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDIE 181
Query: 264 LDSTPCPSTPEW 275
++ P P P+W
Sbjct: 182 -EAPPPPVLPDW 192
>pdb|1I9T|A Chain A, Crystal Structure Of The Oxidized Rna Triphosphatase
Domain Of Mouse Mrna Capping Enzyme
Length = 210
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 113/192 (58%), Gaps = 3/192 (1%)
Query: 84 NKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGL 143
NK+PP WL+CP GQ + G +P K L ++ + R+ + + L+ L K+ L
Sbjct: 4 NKIPPRWLNCPRRGQPVAGRFLPLKTMLGPRYDSQVAEENRFHPSMLSNYLKSLKVKMSL 63
Query: 144 VIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKY 203
++DLTNT+R+Y +D++KEGIK++K+QCKG P + F+ +F ++ +
Sbjct: 64 LVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERF--NERSPPEL 121
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKR 263
I VH THG NRTG++I FL+ S+ A+ FA+ RPPGIYK +Y++ L+ Y +
Sbjct: 122 IGVHXTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDIE 181
Query: 264 LDSTPCPSTPEW 275
++ P P P+W
Sbjct: 182 -EAPPPPVLPDW 192
>pdb|3KYH|C Chain C, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
pdb|3KYH|D Chain D, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
Length = 461
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 109/370 (29%), Positives = 167/370 (45%), Gaps = 73/370 (19%)
Query: 345 FPGSHPVSL-NSDNLQLLRQRYYYATWKADGTRYMMLITID------GCYLIDRCFNFRR 397
FPGS PVS +SD + L YY K DG R +M I I+ GC++IDR N+
Sbjct: 45 FPGSQPVSFQHSDVEEKLLAHDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYL 104
Query: 398 VQ-MRFP--CRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVI 454
V RFP + E L E TLLDGE++I P ++ QE RYL++D +AIN +
Sbjct: 105 VNGFRFPRLPQKKKEELLETLQDGTLLDGELVIQTNPMTKLQELRYLMFDCLAINGRCLT 164
Query: 455 ERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKE 514
+ P R L KE +P ++ Y +R + PF++ K + K+ K
Sbjct: 165 QSPTSSRLAHLGKEFFKPY-FDLRAAYPNRCTTF-----PFKISMKHMDFSYQLVKVAKS 218
Query: 515 FIPKLSHDADGLVFQGWDDPYVPRTHEG-LLKWKYARMNSVDFLF----------EVTDD 563
+ KL H +DGL+F PY + LLKWK + N+VDF + D
Sbjct: 219 -LDKLPHLSDGLIFTPVKAPYTAGGKDSLLLKWKPEQENTVDFKLILDIPMVEDPSLPKD 277
Query: 564 DRQ------------LLYV-----------------FERGKKKLMEGSSVEFTDREPS-- 592
DR LYV F+R + +++E + +F + S
Sbjct: 278 DRNRWYYNYDVKPVFSLYVWQGGADVNSRLKHFDQPFDRKEFEILERTYRKFAELSVSDE 337
Query: 593 ----------FYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRDNITEE 642
+G+I+EC + + W+ +R R DK N + +KV+ SI D+++
Sbjct: 338 EWQNLKNLEQPLNGRIVECAKNQETGAWEMLRFRDDKLNGNHTSVVQKVLESINDSVS-- 395
Query: 643 VLLNEIQEII 652
L +++EI+
Sbjct: 396 --LEDLEEIV 403
>pdb|1P16|A Chain A, Structure Of An Mrna Capping Enzyme Bound To The
Phosphorylated Carboxyl-Terminal Domain Of Rna
Polymerase Ii
pdb|1P16|B Chain B, Structure Of An Mrna Capping Enzyme Bound To The
Phosphorylated Carboxyl-Terminal Domain Of Rna
Polymerase Ii
Length = 395
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 168/353 (47%), Gaps = 45/353 (12%)
Query: 339 GRGNMQFPGSHPVSLNSDNLQ-LLRQRYYYATWKADGTRYMMLITID-----GCYLIDRC 392
GR N FPGS PVS +L+ L Q+ Y+ K DG R ++ + D G +L+ R
Sbjct: 34 GRRNTGFPGSQPVSFERRHLEETLXQKDYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRE 93
Query: 393 FNFRRV-QMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQA 451
++ + + FP + HH TLLDGE++++ + RY+I+D +AI+
Sbjct: 94 NDYYFIPNIHFPLSVNETREKPTYHHGTLLDGELVLENR-NVSEPVLRYVIFDALAIHGK 152
Query: 452 SVIERPFYERWKMLEKEVIEP-RNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNK 510
+I+RP +R + + V +P N+++HN +P + PF+V K +
Sbjct: 153 CIIDRPLPKRLGYITENVXKPFDNFKKHNPDIVNSPEF-----PFKVGFKTXLTSYHADD 207
Query: 511 LLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYV 570
+L + KL H +DGL++ + PYV T + LLKWK A N+VDF E ++ Q +
Sbjct: 208 VLSK-XDKLFHASDGLIYTCAETPYVFGTDQTLLKWKPAEENTVDFQLEFVFNEVQDPDL 266
Query: 571 FERG---------------KKKLMEGSSV--EFTDREPSF------------YSGKIIEC 601
ER K ++ +GS+V +F + S G+I EC
Sbjct: 267 DERDPTSTYLDYDAKPNLIKLRVWQGSNVHTDFAKLDLSDDDWERLKALEQPLQGRIAEC 326
Query: 602 TWDPDVQ-LWKCMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLNEIQEIIR 653
+ W+ +R R DKS N I+ K++ SI+D + E+ ++ +I R
Sbjct: 327 RQSTTKKGYWEXLRFRNDKSNGNHISVVEKILVSIKDGVKEKEVIEWCPKISR 379
>pdb|1CKM|A Chain A, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKM|B Chain B, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKN|A Chain A, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
pdb|1CKO|A Chain A, Structure Of Mrna Capping Enzyme In Complex With The Cap
Analog Gpppg
Length = 330
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 140/309 (45%), Gaps = 44/309 (14%)
Query: 344 QFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLIT----IDGCYLIDRCFNFRRVQ 399
+ PG +PVS+ + + L+Q Y + K DG R+MM T C +IDR +
Sbjct: 55 RLPGPNPVSIERKDFEKLKQNKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLP 114
Query: 400 MRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFY 459
+ R +G ++ DGE+ +D + ++ ++++D + ++ +V +
Sbjct: 115 FKNIPRVLFQG--------SIFDGELCVDIV----EKKFAFVLFDAVVVSGVTVSQMDLA 162
Query: 460 ERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKL 519
R+ +++ + E +N +P +R K+ W+ ++K+ + K
Sbjct: 163 SRFFAMKRSLKEFKNVPE---------------DPAILRYKE-WIPLEHPTIIKDHLKKA 206
Query: 520 S--HDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKK 577
+ + DGL+ D+P + + L K K +++DF+ D + +F+ +K
Sbjct: 207 NAIYHTDGLIIMSVDEPVIYGRNFNLFKLKPGTHHTIDFIIMSEDGT---IGIFDPNLRK 263
Query: 578 LMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRD 637
+V + + G I+EC + WK ++ R+DK+ ND TY K + +I +
Sbjct: 264 -----NVPVGKLDGYYNKGSIVECGFADGT--WKYIQGRSDKNQANDRLTYEKTLLNIEE 316
Query: 638 NITEEVLLN 646
NIT + LL+
Sbjct: 317 NITIDELLD 325
>pdb|1YN9|A Chain A, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
pdb|1YN9|B Chain B, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
pdb|1YN9|C Chain C, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
Length = 169
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 9/172 (5%)
Query: 86 LPPGWLDCPPFGQEIGGC-IIPSKVPL-SEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGL 143
P W + GQ I +I K PL E F ++ +Q++ Q +G
Sbjct: 3 FPARWHNYLQCGQVIKDSNLICFKTPLRPELFAYVTSEEDVWTAEQIVKQ----NPSIGA 58
Query: 144 VIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKY 203
+IDLTNT++YY + G+ + KIQ G+ +P + V F+ V +F +K
Sbjct: 59 IIDLTNTSKYYDGVHFLRAGLLYKKIQVPGQ-TLPPESIVQEFIDTVKEF--TEKCPGML 115
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEAL 255
+ VHCTHG NRTGYM+ +LM + ++ +AI +F + R I + Y++ L
Sbjct: 116 VGVHCTHGINRTGYMVCRYLMHTLGIAPQEAIDRFEKARGHKIERQNYVQDL 167
>pdb|1CKN|B Chain B, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
Length = 330
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 139/309 (44%), Gaps = 44/309 (14%)
Query: 344 QFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLIT----IDGCYLIDRCFNFRRVQ 399
+ PG +PVS+ + + L+Q Y + DG R+MM T C +IDR +
Sbjct: 55 RLPGPNPVSIERKDFEKLKQNKYVVSEXTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLP 114
Query: 400 MRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFY 459
+ R +G ++ DGE+ +D + ++ ++++D + ++ +V +
Sbjct: 115 FKNIPRVLFQG--------SIFDGELCVDIV----EKKFAFVLFDAVVVSGVTVSQMDLA 162
Query: 460 ERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKL 519
R+ +++ + E +N +P +R K+ W+ ++K+ + K
Sbjct: 163 SRFFAMKRSLKEFKNVPE---------------DPAILRYKE-WIPLEHPTIIKDHLKKA 206
Query: 520 S--HDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKK 577
+ + DGL+ D+P + + L K K +++DF+ D + +F+ +K
Sbjct: 207 NAIYHTDGLIIMSVDEPVIYGRNFNLFKLKPGTHHTIDFIIMSEDGT---IGIFDPNLRK 263
Query: 578 LMEGSSVEFTDREPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRD 637
+V + + G I+EC + WK ++ R+DK+ ND TY K + +I +
Sbjct: 264 -----NVPVGKLDGYYNKGSIVECGFADGT--WKYIQGRSDKNQANDRLTYEKTLLNIEE 316
Query: 638 NITEEVLLN 646
NIT + LL+
Sbjct: 317 NITIDELLD 325
>pdb|3RGO|A Chain A, Crystal Structure Of Ptpmt1
Length = 157
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 147 LTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILV 206
L NT++ + KK G++ +++ VP A+++ V QF + + + + V
Sbjct: 44 LCNTSKEW-----KKAGVEQLRLSTVDMTGVPTLANLHKGV----QFALKYQALGQCVYV 94
Query: 207 HCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHE 261
HC G +R+ M+ +L++ + S +AI+ A++R + +E L F+ E
Sbjct: 95 HCKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSHISIRPSQLEVLKEFHKE 149
>pdb|4ERC|A Chain A, Structure Of Vhz Bound To Metavanadate
pdb|4ERC|B Chain B, Structure Of Vhz Bound To Metavanadate
Length = 150
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 206 VHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKR 263
VHC G RTG M+ +L++ + ++ AI + +RP I E +A++ FY +
Sbjct: 93 VHCALGFGRTGTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKAVFQFYQRTK 150
>pdb|2Y96|A Chain A, Structure Of Human Dual-Specificity Phosphatase 27
pdb|2Y96|B Chain B, Structure Of Human Dual-Specificity Phosphatase 27
Length = 219
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 26/108 (24%)
Query: 159 LKKEGIKHVKIQCKGR---DAVPD------------------NASVNNFVYEVTQFLSRQ 197
L+K G HV GR D PD ++ F Y F+ R
Sbjct: 75 LQKAGFTHVLNAAHGRWNVDTGPDYYRDMDIQYHGVEADDLPTFDLSVFFYPAAAFIDRA 134
Query: 198 ---KHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVR 242
HSK ILVHC G +R+ +++ +LM + M++ AI++ A+ R
Sbjct: 135 LSDDHSK--ILVHCVMGRSRSATLVLAYLMIHKDMTLVDAIQQVAKNR 180
>pdb|2I6I|A Chain A, Crystal Structures Of The Archaeal Sulfolobus Ptp-Fold
Phosphatase
pdb|2I6J|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Phosphate Ion
pdb|2I6M|A Chain A, Crystal Structure Of The Complexes Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Tungstate
pdb|3RO1|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Terpyridine
Platinum(Ii)
Length = 161
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 14/100 (14%)
Query: 154 YPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQK---HSKKYILVHCTH 210
Y S LKK G++ + I +PD ++ +QFL+ K K+ LVHC
Sbjct: 50 YYLSILKKNGLQPLHI------PIPDGGVPSD-----SQFLTIMKWLLSEKEGNLVHCVG 98
Query: 211 GHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNE 250
G RTG ++ +L+ ++ + V AI + VRP + E
Sbjct: 99 GIGRTGTILASYLILTEGLEVESAIDEVRLVRPGAVQTYE 138
>pdb|2IMG|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
23 From Homo Sapiens In Complex With Ligand Malate Ion
Length = 151
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 206 VHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKR 263
VHC G RTG + +L++ + ++ AI + +RP I E +A++ FY +
Sbjct: 94 VHCALGFGRTGTXLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKAVFQFYQRTK 151
>pdb|3RGQ|A Chain A, Crystal Structure Of Ptpmt1 In Complex With Pi(5)p
Length = 156
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 147 LTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILV 206
L NT++ + KK G++ +++ VP A+++ V QF + + + + V
Sbjct: 45 LCNTSKEW-----KKAGVEQLRLSTVDMTGVPTLANLHKGV----QFALKYQALGQCVYV 95
Query: 207 HCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHE 261
H G +R+ M+ +L++ + S +AI+ A++R + +E L F+ E
Sbjct: 96 HSKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSHISIRPSQLEVLKEFHKE 150
>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
Length = 348
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 190 VTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGI 246
V +FL ++++ I VHC G RTG +I ++M+ M+ A+ I RP +
Sbjct: 258 VKEFLDICENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSV 314
>pdb|3S4E|A Chain A, Crystal Structrue Of A Novel Mitogen-Activated Protein
Kinase Phosphatase, Skrp1
Length = 144
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 189 EVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYK 248
E +F+ K +LVH G +R +++ FLM S+ S A RP
Sbjct: 69 ECFEFIEEAKRKDGVVLVHSNAGVSRAAAIVIGFLMNSEQTSFTSAFSLVKNARPSICPN 128
Query: 249 NEYIEALYTFYHEK 262
+ ++E L T+ K
Sbjct: 129 SGFMEQLRTYQEGK 142
>pdb|2RF6|A Chain A, Crystal Structure Of The Vaccinia Virus Dual-Specificity
Phosphatase Vh1
pdb|3CM3|A Chain A, High Resolution Crystal Structure Of The Vaccinia Virus
Dual-Specificity Phosphatase Vh1
Length = 176
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 140 KLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNAS-VNNFVYEVTQFLSRQK 198
K V++LT P S++ I H+ + V D + ++ + +VT FLS+
Sbjct: 56 KFKYVLNLTMDKYTLPNSNI---NIIHIPL-------VDDTTTDISKYFDDVTAFLSKCD 105
Query: 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSV 231
+ +LVH G NR+G MI+ +LM S+
Sbjct: 106 QRNEPVLVHSAAGVNRSGAMILAYLMSKNKESL 138
>pdb|2DXP|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Phosphopeptides
A-(P)y-R
pdb|2I6O|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-fold Phosphatase With Phosphopeptides
N-g-(p)y-k-n
pdb|2I6P|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-fold Phosphatase With Pnpp
Length = 161
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 154 YPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQK---HSKKYILVHCTH 210
Y S LKK G++ + I +PD ++ +QFL+ K K+ LVH
Sbjct: 50 YYLSILKKNGLQPLHI------PIPDGGVPSD-----SQFLTIMKWLLSEKEGNLVHSVG 98
Query: 211 GHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNE 250
G RTG ++ +L+ ++ + V AI + VRP + E
Sbjct: 99 GIGRTGTILASYLILTEGLEVESAIDEVRLVRPGAVQTYE 138
>pdb|2Q05|A Chain A, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|B Chain B, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|C Chain C, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|D Chain D, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
Length = 195
Score = 35.4 bits (80), Expect = 0.095, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 140 KLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNAS-VNNFVYEVTQFLSRQK 198
K V++LT P S++ I H+ + V D + ++ + +VT FLS+
Sbjct: 73 KFKYVLNLTXDKYTLPNSNIN---IIHIPL-------VDDTTTDISKYFDDVTAFLSKCD 122
Query: 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSV 231
+ +LVHC G NR+G I+ +L S+
Sbjct: 123 QRNEPVLVHCAAGVNRSGAXILAYLXSKNKESL 155
>pdb|2P4D|A Chain A, Structure-Assisted Discovery Of Variola Major H1
Phosphatase Inhibitors
Length = 172
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 140 KLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNAS-VNNFVYEVTQFLSRQK 198
K V++LT P S++ I H+ + V D + ++ + +VT FLS+
Sbjct: 52 KFKYVLNLTXDKYTLPNSNIN---IIHIPL-------VDDTTTDISKYFDDVTAFLSKCD 101
Query: 199 HSKKYILVHCTHGHNRTGYMIVHFL 223
+ +LVHC G NR+G I+ +L
Sbjct: 102 QRNEPVLVHCVAGVNRSGAXILAYL 126
>pdb|3F81|A Chain A, Interaction Of Vhr With Sa3
pdb|3F81|B Chain B, Interaction Of Vhr With Sa3
Length = 183
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 28/113 (24%)
Query: 159 LKKEGIKHVKIQCKGRDAVPDNASVNNFV----------------YEVTQFLSR------ 196
L+K GI HV +GR + N + N + + ++ + R
Sbjct: 49 LQKLGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFID 108
Query: 197 ----QKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPG 245
QK+ + +LVHC G++R+ +++ +LM Q M V A+ + R G
Sbjct: 109 QALAQKNGR--VLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREIG 159
>pdb|1VHR|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase
pdb|1VHR|B Chain B, Human Vh1-Related Dual-Specificity Phosphatase
Length = 184
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 28/113 (24%)
Query: 159 LKKEGIKHVKIQCKGRDAVPDNASVNNFV----------------YEVTQFLSR------ 196
L+K GI HV +GR + N + N + + ++ + R
Sbjct: 50 LQKLGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFID 109
Query: 197 ----QKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPG 245
QK+ + +LVHC G++R+ +++ +LM Q M V A+ + R G
Sbjct: 110 QALAQKNGR--VLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREIG 160
>pdb|1OHE|A Chain A, Structure Of Cdc14b Phosphatase With A Peptide Ligand
Length = 348
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 190 VTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGI 246
V +FL ++++ I VH G RTG +I ++M+ M+ A+ I RP +
Sbjct: 258 VKEFLDICENAEGAIAVHSKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSV 314
>pdb|2E0T|A Chain A, Crystal Structure Of Catalytic Domain Of Dual Specificity
Phosphatase 26, Ms0830 From Homo Sapiens
Length = 151
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKN 249
ILVHC G +R+ +++ +LM +++ +AIKK + R GI N
Sbjct: 88 ILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHR--GIIPN 131
>pdb|2GWO|A Chain A, Crystal Structure Of Tmdp
pdb|2GWO|B Chain B, Crystal Structure Of Tmdp
pdb|2GWO|C Chain C, Crystal Structure Of Tmdp
pdb|2GWO|D Chain D, Crystal Structure Of Tmdp
Length = 198
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIK 236
+LVHC G +R+ +++ FLM ++M++ +AI+
Sbjct: 134 VLVHCAMGVSRSATLVLAFLMICENMTLVEAIQ 166
>pdb|2OUD|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mkp5
Length = 177
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 202 KYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKN-EYIEALYTFYH 260
K +L+HC G +R+ +++ +LM+ M++ A KF + + P I N ++ L F
Sbjct: 88 KGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAY-KFVKGKRPIISPNLNFMGQLLEFEE 146
Query: 261 EKRLDSTPCPSTPEW 275
+ TP TP+
Sbjct: 147 DLNNGVTPRILTPKL 161
>pdb|2PQ5|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|B Chain B, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|C Chain C, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
pdb|2PQ5|D Chain D, Crystal Structure Of Dual Specificity Protein Phosphatase
13 (Dusp13)
Length = 205
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIK 236
+LVHC G +R+ +++ FLM ++M++ +AI+
Sbjct: 134 VLVHCAMGVSRSATLVLAFLMIYENMTLVEAIQ 166
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 206 VHCTHGHNRTGYMIVHFLM-RSQSMSVAQAIKKFAEVR 242
+HC G RTG MI +L+ R + + +A+ + EVR
Sbjct: 116 IHCKAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVR 153
>pdb|1ZZW|A Chain A, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
pdb|1ZZW|B Chain B, Crystal Structure Of Catalytic Domain Of Human Map Kinase
Phosphatase 5
Length = 149
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 202 KYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRP 243
K +L+HC G +R+ +++ +LM+ M++ A K RP
Sbjct: 84 KGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRP 125
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYI--EALYTFYHE 261
I+VHC+ G RTG IV M + + + + + V +N + E Y F HE
Sbjct: 226 IVVHCSAGVGRTGCFIVIDAML-ERIKTEKTVDVYGHVTLMRSQRNYMVQTEDQYGFIHE 284
Query: 262 KRLDSTPCPSTPEWKREL 279
L++ C +T R L
Sbjct: 285 ALLEAVGCGNTEVPARSL 302
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 204 ILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYI--EALYTFYHE 261
I+VHC+ G RTG IV M + + + + + V +N + E Y+F HE
Sbjct: 224 IVVHCSAGVGRTGCFIVIDAML-ERIKPEKTVDVYGHVTLMRSQRNYMVQTEDQYSFIHE 282
Query: 262 KRLDSTPCPSTPEWKREL 279
L++ C +T R L
Sbjct: 283 ALLEAVGCGNTEVPARSL 300
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 176 AVPDNASVNNFVYEVTQFLSRQKHSKKY----ILVHCTHGHNRTGYMIVHFLMRSQSMSV 231
A PD+ V + + FL R K ++VHC+ G RTG IV M + M
Sbjct: 181 AWPDHG-VPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCFIVIDAML-ERMKH 238
Query: 232 AQAIKKFAEVRPPGIYKNEYI--EALYTFYHEKRLDSTPCPSTPEWKREL 279
+ + + V +N + E Y F HE L++ C T R L
Sbjct: 239 EKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATCGHTEVPARNL 288
>pdb|1J4X|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase C124s
Mutant- Peptide Complex
Length = 184
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 28/113 (24%)
Query: 159 LKKEGIKHVKIQCKGRDAVPDNASVNNFV----------------YEVTQFLSR------ 196
L+K GI HV +GR + N + N + + ++ + R
Sbjct: 50 LQKLGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFID 109
Query: 197 ----QKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPG 245
QK+ + +LVH G++R+ +++ +LM Q M V A+ + R G
Sbjct: 110 QALAQKNGR--VLVHSREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREIG 160
>pdb|2CFV|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Receptor Type J
Length = 316
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 176 AVPDNASV-NNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIV 220
VPD + NF Y V ++ +Q + ILVHC+ G RTG I
Sbjct: 212 GVPDTTDLLINFRYLVRDYM-KQSPPESPILVHCSAGVGRTGTFIA 256
>pdb|2G6Z|A Chain A, Crystal Structure Of Human Dusp5
pdb|2G6Z|B Chain B, Crystal Structure Of Human Dusp5
pdb|2G6Z|C Chain C, Crystal Structure Of Human Dusp5
Length = 211
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 181 ASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAE 240
A +++ E F+ + +LVH G +R+ + + +LM+++ + +A + +
Sbjct: 63 ADISSHFQEAIDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMKTKQFRLKEAF-DYIK 121
Query: 241 VRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKRE 278
R + N Y + L STP P P + E
Sbjct: 122 QRRSMVSPNFGFMGQLLQYESEILPSTPNPQPPSCQGE 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,872,160
Number of Sequences: 62578
Number of extensions: 875343
Number of successful extensions: 1862
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1792
Number of HSP's gapped (non-prelim): 45
length of query: 677
length of database: 14,973,337
effective HSP length: 105
effective length of query: 572
effective length of database: 8,402,647
effective search space: 4806314084
effective search space used: 4806314084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)