Your job contains 1 sequence.
>005794
MASYRPFPQPPQSSFPPPPPPNQNPSQPPPPPQQQQQQQRPNPYSQNWGGYSNTGGGAQQ
HYHQPYSYAQPPPPPPPESSYPPPPPPPPPPPPTQQQTQPSMYYSSNQYNQNSMYPPMQP
PLPPPPPSSPPPSSSIPPPPPPGSPPPPPPKDVEGRDTGTSDRDKRASKEVSRHDPGHSK
QHRPPVPPPGVKKVNGGSGRVETEEERRIRKKREYEKHRQEEKHRLQMKESQNVVMQKSQ
MVASGKGGHGSMVGSRMGDRRAAPLLSGERTENRLKKPTTFLCKLKFRNELPEPSAQPKL
MALKKDKDRFTRYTFSSLEKNYKPQLHVEPDLGIPLDLLDLSVYNPPSVRPPLDPEDEEL
LRDDEVVTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSMESARQSLTEKQAKELREMKG
GRSILENLNDRERQIKEIEASFEACKLRPIHATNKNLQPVEILPLLPDFERYDDQFVAAT
FDGAPTADSEIYSKMDKSVRDAHESRAIMKSYVATGSDSANPEKFLAYMVPSVNELSKDM
YDENEDVSFSWVREYHWDVRGDDADDPTTYLVSFDDDEARYVPLPTKLNLRKKRAIEGRS
NDEVEHFPIPSSIAVRRRANVTAIELKEQGAYSNSKGNSSSSKMGRVDSQEDLERSHNGS
RQQDPYQSSGAEDDMYD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005794
(677 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2017879 - symbol:ELF7 "AT1G79730" species:3702... 1384 1.3e-145 2
FB|FBgn0010750 - symbol:atms "antimeros" species:7227 "Dr... 276 2.0e-21 1
ZFIN|ZDB-GENE-050506-101 - symbol:paf1 "paf1, RNA polymer... 231 2.2e-16 1
UNIPROTKB|G1K1Z2 - symbol:PAF1 "RNA polymerase II-associa... 222 6.1e-16 1
MGI|MGI:1923988 - symbol:Paf1 "Paf1, RNA polymerase II as... 227 7.3e-16 1
RGD|1306219 - symbol:Paf1 "Paf1, RNA polymerase II associ... 226 9.4e-16 1
UNIPROTKB|Q8N7H5 - symbol:PAF1 "RNA polymerase II-associa... 223 2.0e-15 1
UNIPROTKB|Q2KJ14 - symbol:PAF1 "RNA polymerase II-associa... 223 3.4e-15 2
UNIPROTKB|F1SEH0 - symbol:PAF1 "Uncharacterized protein" ... 223 3.4e-15 2
UNIPROTKB|Q5RAX0 - symbol:PAF1 "RNA polymerase II-associa... 223 3.5e-15 2
UNIPROTKB|Q6P2Y1 - symbol:paf1 "RNA polymerase II-associa... 222 8.4e-15 2
UNIPROTKB|A2BD83 - symbol:paf1 "RNA polymerase II-associa... 214 2.0e-14 1
UNIPROTKB|B4DGJ5 - symbol:PAF1 "RNA polymerase II-associa... 149 8.4e-08 1
UNIPROTKB|F8W9Q2 - symbol:PAF1 "RNA polymerase II-associa... 112 1.3e-07 3
WB|WBGene00008338 - symbol:C55A6.9 species:6239 "Caenorha... 148 2.8e-07 1
UNIPROTKB|P90783 - symbol:C55A6.9 "RNA polymerase II-asso... 148 2.8e-07 1
SGD|S000000483 - symbol:PAF1 "Component of the Paf1p comp... 127 2.1e-06 2
CGD|CAL0000306 - symbol:orf19.3613 species:5476 "Candida ... 97 0.00046 3
>TAIR|locus:2017879 [details] [associations]
symbol:ELF7 "AT1G79730" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009910 "negative regulation of flower
development" evidence=IMP] [GO:0016571 "histone methylation"
evidence=RCA;IMP] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016579 "protein
deubiquitination" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] EMBL:CP002684
GO:GO:0009910 GO:GO:0016571 KO:K15174 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 IPI:IPI00523920 RefSeq:NP_178091.2
UniGene:At.44777 PRIDE:F4HQA1 EnsemblPlants:AT1G79730.1
GeneID:844312 KEGG:ath:AT1G79730 OMA:RERAKPD Uniprot:F4HQA1
Length = 589
Score = 1384 (492.3 bits), Expect = 1.3e-145, Sum P(2) = 1.3e-145
Identities = 278/456 (60%), Positives = 336/456 (73%)
Query: 220 QEEKHRLQMKESQNVVMQKSQMVASGKGGHGSMVGSRMGDRRAAPLLSGERTENRLKKPT 279
Q+EKHR QMK S KSQM GH +++ PLL+ +R ENRLKKPT
Sbjct: 149 QDEKHRQQMKNSH-----KSQMPK----GHTE-------EKKPTPLLTTDRVENRLKKPT 192
Query: 280 TFLCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEXXXXXXXXXX 339
TF+CKLKFRNELP+PSAQ KLM +K+DKD+FT+YT +SLEK +KP++ VE
Sbjct: 193 TFICKLKFRNELPDPSAQLKLMTIKRDKDQFTKYTITSLEKLWKPKIFVEPDLGIPLDLL 252
Query: 340 XXSVYNPPSXXXXXXXXXXXXXXXXXXXTPVKKDGIKRKERPTDKGVSWLVKTQYISPLS 399
SVYNPP TP+KKDGI+RKERPTDKG+SWLVKTQYIS ++
Sbjct: 253 DLSVYNPPKVKAPLAPEDEELLRDDDAVTPIKKDGIRRKERPTDKGMSWLVKTQYISSIN 312
Query: 400 MESARQSLTEKQAKELREMKGGRSILENLNDRERQIKEIEASFEACKLRPIHATNKNLQP 459
ESARQSLTEKQAKELREMKGG +IL NLN+RERQIK+IEASFEACK RP+HATNKNLQP
Sbjct: 313 NESARQSLTEKQAKELREMKGGINILHNLNNRERQIKDIEASFEACKSRPVHATNKNLQP 372
Query: 460 VEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIMKSYVATGSDS 519
VE+LPLLP F+RYD+QFV A FDGAP ADSE + K+D S+RDAHESRAI+KSYV GSD+
Sbjct: 373 VEVLPLLPYFDRYDEQFVVANFDGAPIADSEFFGKLDPSIRDAHESRAILKSYVVAGSDT 432
Query: 520 ANPEKFLAYMVPSVNELSKDMYDENEDVSFSWVREYHWDVRGDDADDPTTYLVSFDDDEA 579
ANPEKFLAYMVPS++ELSKD++DENE++S++WVREY WDV+ +A+DP TYLVSFD+ A
Sbjct: 433 ANPEKFLAYMVPSLDELSKDIHDENEEISYTWVREYLWDVQ-PNANDPGTYLVSFDNGTA 491
Query: 580 RYVPLPTKLNLRKKRAIEGRSNDEVEHFPIPSSIAVRRRANVTAIELKEQGAYXXXXXXX 639
Y+PLP +LNLRKKRA EGRS+DE+EHFP+PS + VRRR+ V+ IE K+ G Y
Sbjct: 492 SYLPLPMRLNLRKKRAREGRSSDEIEHFPVPSRVTVRRRSTVSVIEHKDSGVYSSRVGAS 551
Query: 640 XXXXMGRVDSQEDLERSHNGSRQQDPYQ-SSGAEDD 674
M R++ + L RS +QD Q S G EDD
Sbjct: 552 SSK-MRRLEDEGGLGRSWKHEPEQDANQYSDGNEDD 586
Score = 60 (26.2 bits), Expect = 1.3e-145, Sum P(2) = 1.3e-145
Identities = 25/86 (29%), Positives = 30/86 (34%)
Query: 156 RDTGTSDRDKRASKEVSRHD---PGHSKQHRXXXXXXXXXXXXXXSGXXXXXXXXXXXXX 212
R G +D +K ASK+V R + P SK H S
Sbjct: 90 RHQGPNDHEKGASKQVGRRERAKPDPSKHHHRSHLPH--------SKKIETEEERRLRKK 141
Query: 213 XXXXXXXQEEKHRLQMKESQNVVMQK 238
Q+EKHR QMK S M K
Sbjct: 142 RELEKQRQDEKHRQQMKNSHKSQMPK 167
>FB|FBgn0010750 [details] [associations]
symbol:atms "antimeros" species:7227 "Drosophila
melanogaster" [GO:0019894 "kinesin binding" evidence=IDA]
[GO:0016593 "Cdc73/Paf1 complex" evidence=IDA] [GO:0035327
"transcriptionally active chromatin" evidence=IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IMP] EMBL:AE014297
GO:GO:0045893 GO:GO:0022008 GO:GO:0035327 GO:GO:0016593
eggNOG:NOG297168 KO:K15174 InterPro:IPR007133 PANTHER:PTHR23188
Pfam:PF03985 GeneTree:ENSGT00390000001474 EMBL:AY070561
RefSeq:NP_649493.1 UniGene:Dm.1063 IntAct:Q9VN55 STRING:Q9VN55
EnsemblMetazoa:FBtr0078868 GeneID:40593 KEGG:dme:Dmel_CG2503
UCSC:CG2503-RA CTD:40593 FlyBase:FBgn0010750 InParanoid:Q9VN55
OMA:ENIEAKV OrthoDB:EOG4X0K7V GenomeRNAi:40593 NextBio:819560
Uniprot:Q9VN55
Length = 538
Score = 276 (102.2 bits), Expect = 2.0e-21, P = 2.0e-21
Identities = 93/360 (25%), Positives = 161/360 (44%)
Query: 269 ERTENRLKKPTTFLCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHV 328
+R + + ++ + +C++K+ N LP+ K + D RF +Y +SLE+N+K +
Sbjct: 16 KRPQRQTERKSEIICRVKYGNNLPDIPFDLKFLQYPFDSHRFVQYNPTSLERNFKYDVLT 75
Query: 329 EXXXXXXXXXXXXSVYNPPSXXXXXXXXXXXXXXXXXXXTPVKKDGIKRKERPTDKGVSW 388
E +Y S TP D ++ ++ + VSW
Sbjct: 76 EHDLGVTVDLINRELYQADSMTLLDPADEKLLEEETL--TPT--DSVRSRQH--SRTVSW 129
Query: 389 LVKTQYISPLSMESARQSLTEKQAKELREMKGGRSILENLN--DRERQIKEIEASFEACK 446
L K++YIS Q+L +AK +K +S+ E DRE QIK IE +F K
Sbjct: 130 LRKSEYISTEQTRFQPQNLENIEAKVGYNVK--KSLREETLYLDREAQIKAIEKTFSDTK 187
Query: 447 LRPI-HATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPT-ADSEIYSKMDKSVRDAHE 504
H + N+ PVE+LP+ PDF + FD P A + +++++
Sbjct: 188 SEITKHYSKPNVVPVEVLPIFPDFTNWKFPCAQVIFDSDPAPAGKNVPAQLEEM------ 241
Query: 505 SRAIMKSYVATGSDSANPEKFLAYMVPSVNELSK--------DMYDENEDVSFSWVREYH 556
S+A+++ + D + E+F+AY +P+ L K ++Y E E+ + REY+
Sbjct: 242 SQAMIRGVM----DESG-EQFVAYFLPTEQTLEKRRTDFINGELYKEEEEYEYKIAREYN 296
Query: 557 WDVRGDDADD-PTTYLVSFDDDEARYVPLPTKLNLRKKRAIEGR--SNDE--VEHFPIPS 611
W+V+ + Y D Y L T++ L K+R G+ +N + V+H P+ S
Sbjct: 297 WNVKTKASKGYEENYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVKHRPLDS 356
>ZFIN|ZDB-GENE-050506-101 [details] [associations]
symbol:paf1 "paf1, RNA polymerase II associated
factor, homolog (S. cerevisiae)" species:7955 "Danio rerio"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0000993 "RNA polymerase II core
binding" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007507 "heart
development" evidence=IMP] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IDA] ZFIN:ZDB-GENE-050506-101 GO:GO:0007507 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0032968 GO:GO:0016593
GO:GO:0000993 CTD:54623 HOGENOM:HOG000115425 HOVERGEN:HBG053131
KO:K15174 OrthoDB:EOG46HG9T InterPro:IPR007133 PANTHER:PTHR23188
Pfam:PF03985 EMBL:DQ022213 EMBL:BC139613 IPI:IPI00611430
RefSeq:NP_001019624.1 UniGene:Dr.70839 IntAct:Q4U0S5 STRING:Q4U0S5
PRIDE:Q4U0S5 GeneID:553020 KEGG:dre:553020 eggNOG:NOG245460
InParanoid:Q4U0S5 NextBio:20879918 Uniprot:Q4U0S5
Length = 503
Score = 231 (86.4 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 97/411 (23%), Positives = 174/411 (42%)
Query: 282 LCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEXXXXXXXXXXXX 341
+C++K+ N LP+ PK + D+ RF +Y +SLEK +K +L E
Sbjct: 30 VCRVKYGNSLPDIPFDPKFITYPFDQHRFVQYKATSLEKQHKHELLTEPDLGVTI----- 84
Query: 342 SVYNPPSXXXXXXXXXXXXXXXXXXXTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSME 401
+ NP + KR ++ K V W+ KT+YIS E
Sbjct: 85 DLINPDTYRIDPNILLDPADEKLLEEEIQAPSSSKRSQQHA-KVVPWMRKTEYIST---E 140
Query: 402 SARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIEASFE-ACKLRPIHATN 454
R ++ ++ E+K G S+ + DR+ QI IE +FE A K H +
Sbjct: 141 FNRYGVSNEKV----EVKIGVSVKQQFTEEEIYKDRDSQIAAIEKTFEDAQKSISQHYSK 196
Query: 455 KNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIMKSYVA 514
+ PVE+LP+ PDF+ + + FD P A ++ + + S+A+++ +
Sbjct: 197 PRVTPVEVLPVFPDFKMWINPCAQVIFDSDP-APKDVSAPAGVDMM----SQAMIRGMM- 250
Query: 515 TGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSF--------SWVREYHWDVRGDDADD 566
+ N +F+AY +P+ + + K D E++ + REY+W+V+ +
Sbjct: 251 --DEEGN--QFVAYFLPNEDTMRKRKRDVEEELDYMPEEVYEYKIAREYNWNVKNKASKG 306
Query: 567 -PTTYLVSFDD-DEARYVPLPTKLNLRKKRAIEGRSNDEVEHFPIPSSIAVRRRANVTAI 624
Y F D D Y L T++ L K+RA G + +++ V + ++
Sbjct: 307 YEENYFFIFRDADGVYYNELETRVRLSKRRAKVGAQSST-------NAVLVCKHRDMNEK 359
Query: 625 ELKEQGAYXXXXXXXX-XXXMGRVDSQEDLERSHNGSRQQDPYQSSGAEDD 674
EL+ Q A +D ++D++ +G ++ P S +E +
Sbjct: 360 ELEAQEARKAQLENHEPEDEEEELDLEKDMQED-SGEEREKPSDSENSESE 409
>UNIPROTKB|G1K1Z2 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9913 "Bos taurus" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IEA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IEA] [GO:0033523 "histone H2B
ubiquitination" evidence=IEA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0031442 "positive regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex" evidence=IEA]
[GO:0010390 "histone monoubiquitination" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0001711 "endodermal cell fate commitment" evidence=IEA]
[GO:0000993 "RNA polymerase II core binding" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] GO:GO:0045944 GO:GO:0006378
GO:GO:0071222 GO:GO:0000122 GO:GO:0045749 GO:GO:0019827
GO:GO:0032968 GO:GO:0033523 GO:GO:0010390 GO:GO:0031442
GO:GO:0016593 GO:GO:0001711 GO:GO:0045638 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 GeneTree:ENSGT00390000001474
OMA:VEMMSQA EMBL:DAAA02047055 Ensembl:ENSBTAT00000027224
Uniprot:G1K1Z2
Length = 355
Score = 222 (83.2 bits), Expect = 6.1e-16, P = 6.1e-16
Identities = 87/334 (26%), Positives = 140/334 (41%)
Query: 282 LCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEXXXXXXXXXXXX 341
+C++K+ N LP+ PK + D++RF +Y +SLEK +K L E
Sbjct: 30 VCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTI----- 84
Query: 342 SVYNPPSXXXXXXXXXXXXXXXXXXXTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSME 401
+ NP + KR ++ K V W+ KT+YIS E
Sbjct: 85 DLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHA-KVVPWMRKTEYIST---E 140
Query: 402 SARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIEASFE-ACKLRPIHATN 454
R ++ ++ E+K G S+ + DR+ QI IE +FE A K H +
Sbjct: 141 FNRYGISNEKP----EVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSK 196
Query: 455 KNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIMKSYVA 514
+ PVE++P+ PDF+ + + FD P + D S A E +M +
Sbjct: 197 PRVTPVEVMPVFPDFKMWINPCAQVIFDSDP-------APKDTSGAAALE---MMSQAMI 246
Query: 515 TGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFS--------WVREYHWDVRGDDADD 566
G +F+AY +P L K D+ E++ ++ REY+W+V+ +
Sbjct: 247 RGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKG 306
Query: 567 -PTTYLVSF-DDDEARYVPLPTKLNLRKKRAIEG 598
Y F + D Y L T++ L K+RA G
Sbjct: 307 YEENYFFIFREGDGVYYNELETRVRLSKRRAKAG 340
>MGI|MGI:1923988 [details] [associations]
symbol:Paf1 "Paf1, RNA polymerase II associated factor,
homolog (S. cerevisiae)" species:10090 "Mus musculus" [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0000993 "RNA polymerase II core
binding" evidence=ISO] [GO:0001711 "endodermal cell fate
commitment" evidence=IMP] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=ISO] [GO:0010390 "histone
monoubiquitination" evidence=ISO] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=ISO] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0031442 "positive regulation of mRNA 3'-end processing"
evidence=ISO] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=ISO]
[GO:0033523 "histone H2B ubiquitination" evidence=ISO] [GO:0045638
"negative regulation of myeloid cell differentiation" evidence=ISO]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0071222
"cellular response to lipopolysaccharide" evidence=IDA]
MGI:MGI:1923988 GO:GO:0016055 GO:GO:0045944 GO:GO:0006378
GO:GO:0006351 GO:GO:0003682 GO:GO:0071222 GO:GO:0000122
GO:GO:0045749 GO:GO:0019827 GO:GO:0032968 GO:GO:0033523
GO:GO:0010390 GO:GO:0031442 GO:GO:0016593 GO:GO:0000993
GO:GO:0001711 GO:GO:0045638 CTD:54623 eggNOG:NOG297168
HOGENOM:HOG000115425 HOVERGEN:HBG053131 KO:K15174 OrthoDB:EOG46HG9T
InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985
GeneTree:ENSGT00390000001474 OMA:VEMMSQA EMBL:AB041615
EMBL:AK017762 EMBL:AK134857 EMBL:AK148538 EMBL:BC029843
EMBL:BC083337 IPI:IPI00331654 RefSeq:NP_062331.2 UniGene:Mm.7916
ProteinModelPortal:Q8K2T8 IntAct:Q8K2T8 STRING:Q8K2T8
PhosphoSite:Q8K2T8 PaxDb:Q8K2T8 PRIDE:Q8K2T8
Ensembl:ENSMUST00000003529 GeneID:54624 KEGG:mmu:54624
UCSC:uc009fyu.1 InParanoid:Q8K2T8 NextBio:311440 Bgee:Q8K2T8
Genevestigator:Q8K2T8 Uniprot:Q8K2T8
Length = 535
Score = 227 (85.0 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 101/415 (24%), Positives = 166/415 (40%)
Query: 282 LCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEXXXXXXXXXXXX 341
+C++K+ N LP+ PK + D++RF +Y +SLEK +K L E
Sbjct: 30 VCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTI----- 84
Query: 342 SVYNPPSXXXXXXXXXXXXXXXXXXXTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSME 401
+ NP + KR ++ K V W+ KT+YIS E
Sbjct: 85 DLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHA-KVVPWMRKTEYIST---E 140
Query: 402 SARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIEASFE-ACKLRPIHATN 454
R ++ ++ E+K G S+ + DR+ QI IE +FE A K H +
Sbjct: 141 FNRYGISNEKP----EVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSK 196
Query: 455 KNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIMKSYVA 514
+ PVE++P+ PDF+ + + FD P + D S A E +M +
Sbjct: 197 PRVTPVEVMPVFPDFKMWINPCAQVIFDSDP-------APKDTSGAAALE---MMSQAMI 246
Query: 515 TGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFS--------WVREYHWDVRGDDADD 566
G +F+AY +P L K D+ E++ ++ REY+W+V+ +
Sbjct: 247 RGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKG 306
Query: 567 -PTTYLVSF-DDDEARYVPLPTKLNLRKKRAIEG-RSNDE----VEHFPIPSSIAVRRRA 619
Y F + D Y L T++ L K+RA G +S V+H + + A
Sbjct: 307 YEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEA 366
Query: 620 NVTAIELKEQGAYXXXXXXXXXXXMGRVDSQEDLERSHNGSRQQDPYQSSGAEDD 674
+E E G S E+ E+ + ++ + SG+E D
Sbjct: 367 RKAQLENHEPEEEEEEEMEAEEKEAG--GSDEEQEKGSSSEKEGSEDEHSGSESD 419
>RGD|1306219 [details] [associations]
symbol:Paf1 "Paf1, RNA polymerase II associated factor, homolog
(S. cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0000993 "RNA polymerase II core
binding" evidence=ISO;ISS] [GO:0001711 "endodermal cell fate
commitment" evidence=ISO;ISS] [GO:0003682 "chromatin binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005739
"mitochondrion" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006378 "mRNA polyadenylation"
evidence=ISO;ISS] [GO:0010390 "histone monoubiquitination"
evidence=IEA;ISO] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISO;ISS]
[GO:0019827 "stem cell maintenance" evidence=IEA;ISO] [GO:0031442
"positive regulation of mRNA 3'-end processing" evidence=ISO;ISS]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=ISO;ISS] [GO:0033523 "histone
H2B ubiquitination" evidence=IEA;ISO] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=ISO;ISS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=ISO;ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO;ISS] [GO:0071222
"cellular response to lipopolysaccharide" evidence=ISO;ISS]
[GO:0005730 "nucleolus" evidence=ISO] RGD:1306219 GO:GO:0016055
GO:GO:0045944 GO:GO:0006378 GO:GO:0006351 GO:GO:0071222
GO:GO:0000122 GO:GO:0045749 GO:GO:0019827 GO:GO:0032968
GO:GO:0033523 GO:GO:0010390 GO:GO:0031442 GO:GO:0016593
GO:GO:0000993 GO:GO:0001711 GO:GO:0045638 CTD:54623
eggNOG:NOG297168 HOGENOM:HOG000115425 HOVERGEN:HBG053131 KO:K15174
OrthoDB:EOG46HG9T InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985
GeneTree:ENSGT00390000001474 OMA:VEMMSQA EMBL:BC097494
IPI:IPI00201279 RefSeq:NP_001020069.1 UniGene:Rn.161558
STRING:Q4V886 PhosphoSite:Q4V886 PRIDE:Q4V886
Ensembl:ENSRNOT00000026778 GeneID:361531 KEGG:rno:361531
UCSC:RGD:1306219 InParanoid:Q4V886 NextBio:676629
Genevestigator:Q4V886 Uniprot:Q4V886
Length = 535
Score = 226 (84.6 bits), Expect = 9.4e-16, P = 9.4e-16
Identities = 101/415 (24%), Positives = 166/415 (40%)
Query: 282 LCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEXXXXXXXXXXXX 341
+C++K+ N LP+ PK + D++RF +Y +SLEK +K L E
Sbjct: 30 VCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTI----- 84
Query: 342 SVYNPPSXXXXXXXXXXXXXXXXXXXTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSME 401
+ NP + KR ++ K V W+ KT+YIS E
Sbjct: 85 DLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHA-KVVPWMRKTEYIST---E 140
Query: 402 SARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIEASFE-ACKLRPIHATN 454
R ++ ++ E+K G S+ + DR+ QI IE +FE A K H +
Sbjct: 141 FNRYGISNEKP----EVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSK 196
Query: 455 KNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIMKSYVA 514
+ PVE++P+ PDF+ + + FD P + D S A E +M +
Sbjct: 197 PRVTPVEVMPVFPDFKMWINPCAQVIFDSDP-------APKDTSGAAALE---MMSQAMI 246
Query: 515 TGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFS--------WVREYHWDVRGDDADD 566
G +F+AY +P L K D+ E++ ++ REY+W+V+ +
Sbjct: 247 RGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKG 306
Query: 567 -PTTYLVSF-DDDEARYVPLPTKLNLRKKRAIEG-RSNDE----VEHFPIPSSIAVRRRA 619
Y F + D Y L T++ L K+RA G +S V+H + + A
Sbjct: 307 YEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEA 366
Query: 620 NVTAIELKEQGAYXXXXXXXXXXXMGRVDSQEDLERSHNGSRQQDPYQSSGAEDD 674
+E E G S E+ E+ + ++ + SG+E D
Sbjct: 367 RKAQLENHEPEEEEEEEMEAEEKEAG--GSDEEHEKGSSSEKEGSEDERSGSESD 419
>UNIPROTKB|Q8N7H5 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0010390 "histone monoubiquitination" evidence=IDA] [GO:0033523
"histone H2B ubiquitination" evidence=IDA] [GO:0016593 "Cdc73/Paf1
complex" evidence=IDA] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISS] [GO:0032968 "positive regulation
of transcription elongation from RNA polymerase II promoter"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0000993 "RNA
polymerase II core binding" evidence=IDA] [GO:0045749 "negative
regulation of S phase of mitotic cell cycle" evidence=IMP]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=IMP] [GO:0031442 "positive regulation of
mRNA 3'-end processing" evidence=IMP] [GO:0001711 "endodermal cell
fate commitment" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
GO:GO:0005739 GO:GO:0016055 GO:GO:0045944 GO:GO:0006378
EMBL:CH471126 GO:GO:0006351 GO:GO:0071222 GO:GO:0000122
GO:GO:0045749 GO:GO:0019827 GO:GO:0032968 GO:GO:0033523
GO:GO:0010390 GO:GO:0031442 GO:GO:0016593 GO:GO:0000993
GO:GO:0001711 GO:GO:0045638 CTD:54623 eggNOG:NOG297168
HOGENOM:HOG000115425 HOVERGEN:HBG053131 KO:K15174
InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985 OMA:VEMMSQA
EMBL:AJ401156 EMBL:AK001985 EMBL:AK098423 EMBL:AC005239
EMBL:BC000017 EMBL:BC013402 IPI:IPI00300333 IPI:IPI00384593
RefSeq:NP_001243755.1 RefSeq:NP_061961.2 UniGene:Hs.466714
ProteinModelPortal:Q8N7H5 DIP:DIP-48673N IntAct:Q8N7H5
STRING:Q8N7H5 DMDM:182670295 PaxDb:Q8N7H5 PRIDE:Q8N7H5
Ensembl:ENST00000221265 GeneID:54623 KEGG:hsa:54623 UCSC:uc002old.3
GeneCards:GC19M039876 HGNC:HGNC:25459 HPA:HPA041875 MIM:610506
neXtProt:NX_Q8N7H5 PharmGKB:PA142671206 InParanoid:Q8N7H5
PhylomeDB:Q8N7H5 ChiTaRS:PAF1 GenomeRNAi:54623 NextBio:57158
ArrayExpress:Q8N7H5 Bgee:Q8N7H5 CleanEx:HS_PAF1
Genevestigator:Q8N7H5 Uniprot:Q8N7H5
Length = 531
Score = 223 (83.6 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 100/415 (24%), Positives = 166/415 (40%)
Query: 282 LCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEXXXXXXXXXXXX 341
+C++K+ N LP+ PK + D++RF +Y +SLEK +K L E
Sbjct: 30 VCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTI----- 84
Query: 342 SVYNPPSXXXXXXXXXXXXXXXXXXXTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSME 401
+ NP + KR ++ K V W+ KT+YIS E
Sbjct: 85 DLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHA-KVVPWMRKTEYIST---E 140
Query: 402 SARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIEASFE-ACKLRPIHATN 454
R ++ ++ E+K G S+ + DR+ QI IE +FE A K H +
Sbjct: 141 FNRYGISNEKP----EVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSK 196
Query: 455 KNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIMKSYVA 514
+ PVE++P+ PDF+ + + FD P + D S A E +M +
Sbjct: 197 PRVTPVEVMPVFPDFKMWINPCAQVIFDSDP-------APKDTSGAAALE---MMSQAMI 246
Query: 515 TGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFS--------WVREYHWDVRGDDADD 566
G +F+AY +P L K D+ E++ ++ REY+W+V+ +
Sbjct: 247 RGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKG 306
Query: 567 -PTTYLVSF-DDDEARYVPLPTKLNLRKKRAIEG-RSNDE----VEHFPIPSSIAVRRRA 619
Y F + D Y L T++ L K+RA G +S V+H + + A
Sbjct: 307 YEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEA 366
Query: 620 NVTAIELKEQGAYXXXXXXXXXXXMGRVDSQEDLERSHNGSRQQDPYQSSGAEDD 674
+E E G S E+ E+ + ++ + SG+E +
Sbjct: 367 RKAQLENHEPEEEEEEEMETEEKEAG--GSDEEQEKGSSSEKEGSEDEHSGSESE 419
>UNIPROTKB|Q2KJ14 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9913 "Bos taurus" [GO:0031442 "positive regulation of mRNA
3'-end processing" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0001711 "endodermal cell fate commitment"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0045638
"negative regulation of myeloid cell differentiation" evidence=ISS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=ISS] [GO:0000993 "RNA polymerase II core binding"
evidence=ISS] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISS] [GO:0033523 "histone H2B
ubiquitination" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010390 "histone monoubiquitination"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] GO:GO:0016055 GO:GO:0045944
GO:GO:0006378 GO:GO:0006351 GO:GO:0071222 GO:GO:0000122
GO:GO:0045749 GO:GO:0019827 GO:GO:0032968 GO:GO:0033523
GO:GO:0010390 GO:GO:0031442 GO:GO:0016593 GO:GO:0000993
GO:GO:0001711 GO:GO:0045638 EMBL:BC105570 IPI:IPI00694741
RefSeq:NP_001039758.1 UniGene:Bt.13382 STRING:Q2KJ14 PRIDE:Q2KJ14
GeneID:528744 KEGG:bta:528744 CTD:54623 eggNOG:NOG297168
HOGENOM:HOG000115425 HOVERGEN:HBG053131 InParanoid:Q2KJ14 KO:K15174
OrthoDB:EOG46HG9T NextBio:20874890 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 Uniprot:Q2KJ14
Length = 532
Score = 223 (83.6 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 100/415 (24%), Positives = 166/415 (40%)
Query: 282 LCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEXXXXXXXXXXXX 341
+C++K+ N LP+ PK + D++RF +Y +SLEK +K L E
Sbjct: 30 VCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTI----- 84
Query: 342 SVYNPPSXXXXXXXXXXXXXXXXXXXTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSME 401
+ NP + KR ++ K V W+ KT+YIS E
Sbjct: 85 DLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHA-KVVPWMRKTEYIST---E 140
Query: 402 SARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIEASFE-ACKLRPIHATN 454
R ++ ++ E+K G S+ + DR+ QI IE +FE A K H +
Sbjct: 141 FNRYGISNEKP----EVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSK 196
Query: 455 KNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIMKSYVA 514
+ PVE++P+ PDF+ + + FD P + D S A E +M +
Sbjct: 197 PRVTPVEVMPVFPDFKMWINPCAQVIFDSDP-------APKDTSGAAALE---MMSQAMI 246
Query: 515 TGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFS--------WVREYHWDVRGDDADD 566
G +F+AY +P L K D+ E++ ++ REY+W+V+ +
Sbjct: 247 RGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKG 306
Query: 567 -PTTYLVSF-DDDEARYVPLPTKLNLRKKRAIEG-RSNDE----VEHFPIPSSIAVRRRA 619
Y F + D Y L T++ L K+RA G +S V+H + + A
Sbjct: 307 YEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEA 366
Query: 620 NVTAIELKEQGAYXXXXXXXXXXXMGRVDSQEDLERSHNGSRQQDPYQSSGAEDD 674
+E E G D E+ E+ + ++ + SG+E +
Sbjct: 367 RKAQLENHEPEEEEEEEMETEEKEAGASD--EEREKGSSSEKEGSEDERSGSESE 419
Score = 40 (19.1 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 655 RSHNGSRQQDPYQSSGAE 672
RSH+ SR P+ S G+E
Sbjct: 493 RSHSRSRSASPFPS-GSE 509
>UNIPROTKB|F1SEH0 [details] [associations]
symbol:PAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0001711
"endodermal cell fate commitment" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] CTD:54623 KO:K15174 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 GeneTree:ENSGT00390000001474
OMA:VEMMSQA EMBL:FP236263 RefSeq:XP_003359435.1 UniGene:Ssc.24777
Ensembl:ENSSSCT00000011713 Ensembl:ENSSSCT00000036353
GeneID:100514194 KEGG:ssc:100514194 Uniprot:F1SEH0
Length = 532
Score = 223 (83.6 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 100/415 (24%), Positives = 166/415 (40%)
Query: 282 LCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEXXXXXXXXXXXX 341
+C++K+ N LP+ PK + D++RF +Y +SLEK +K L E
Sbjct: 30 VCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTI----- 84
Query: 342 SVYNPPSXXXXXXXXXXXXXXXXXXXTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSME 401
+ NP + KR ++ K V W+ KT+YIS E
Sbjct: 85 DLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHA-KVVPWMRKTEYIST---E 140
Query: 402 SARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIEASFE-ACKLRPIHATN 454
R ++ ++ E+K G S+ + DR+ QI IE +FE A K H +
Sbjct: 141 FNRYGISNEKP----EVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSK 196
Query: 455 KNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIMKSYVA 514
+ PVE++P+ PDF+ + + FD P + D S A E +M +
Sbjct: 197 PRVTPVEVMPVFPDFKMWINPCAQVIFDSDP-------APKDTSGAAALE---MMSQAMI 246
Query: 515 TGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFS--------WVREYHWDVRGDDADD 566
G +F+AY +P L K D+ E++ ++ REY+W+V+ +
Sbjct: 247 RGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKG 306
Query: 567 -PTTYLVSF-DDDEARYVPLPTKLNLRKKRAIEG-RSNDE----VEHFPIPSSIAVRRRA 619
Y F + D Y L T++ L K+RA G +S V+H + + A
Sbjct: 307 YEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEA 366
Query: 620 NVTAIELKEQGAYXXXXXXXXXXXMGRVDSQEDLERSHNGSRQQDPYQSSGAEDD 674
+E E G S E+ E+ + ++ + SG+E +
Sbjct: 367 RKAQLENHEPEEEEEEEMETEEKEAG--GSDEEREKGSSSEKEGSEDERSGSESE 419
Score = 40 (19.1 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 655 RSHNGSRQQDPYQSSGAE 672
RSH+ SR P+ S G+E
Sbjct: 493 RSHSRSRSASPFPS-GSE 509
>UNIPROTKB|Q5RAX0 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000993 "RNA polymerase II core binding" evidence=ISS]
[GO:0001711 "endodermal cell fate commitment" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0016593
"Cdc73/Paf1 complex" evidence=ISS] [GO:0031442 "positive regulation
of mRNA 3'-end processing" evidence=ISS] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0045638 "negative regulation of myeloid
cell differentiation" evidence=ISS] [GO:0045749 "negative
regulation of S phase of mitotic cell cycle" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0071222 "cellular
response to lipopolysaccharide" evidence=ISS] GO:GO:0016055
GO:GO:0045944 GO:GO:0006378 GO:GO:0006351 GO:GO:0071222
GO:GO:0000122 GO:GO:0045749 GO:GO:0032968 GO:GO:0031442
GO:GO:0016593 GO:GO:0000993 GO:GO:0001711 GO:GO:0045638 CTD:54623
HOVERGEN:HBG053131 KO:K15174 InterPro:IPR007133 PANTHER:PTHR23188
Pfam:PF03985 EMBL:CR858891 RefSeq:NP_001125634.1 UniGene:Pab.18319
PRIDE:Q5RAX0 GeneID:100172552 KEGG:pon:100172552 InParanoid:Q5RAX0
Uniprot:Q5RAX0
Length = 533
Score = 223 (83.6 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 100/415 (24%), Positives = 166/415 (40%)
Query: 282 LCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEXXXXXXXXXXXX 341
+C++K+ N LP+ PK + D++RF +Y +SLEK +K L E
Sbjct: 30 VCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTI----- 84
Query: 342 SVYNPPSXXXXXXXXXXXXXXXXXXXTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSME 401
+ NP + KR ++ K V W+ KT+YIS E
Sbjct: 85 DLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHA-KVVPWMRKTEYIST---E 140
Query: 402 SARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIEASFE-ACKLRPIHATN 454
R ++ ++ E+K G S+ + DR+ QI IE +FE A K H +
Sbjct: 141 FNRYGISNEKP----EVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSK 196
Query: 455 KNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIMKSYVA 514
+ PVE++P+ PDF+ + + FD P + D S A E +M +
Sbjct: 197 PRVTPVEVMPVFPDFKMWINPCAQVIFDSDP-------APKDTSGAAALE---MMSQAMI 246
Query: 515 TGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFS--------WVREYHWDVRGDDADD 566
G +F+AY +P L K D+ E++ ++ REY+W+V+ +
Sbjct: 247 RGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKG 306
Query: 567 -PTTYLVSF-DDDEARYVPLPTKLNLRKKRAIEG-RSNDE----VEHFPIPSSIAVRRRA 619
Y F + D Y L T++ L K+RA G +S V+H + + A
Sbjct: 307 YEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEA 366
Query: 620 NVTAIELKEQGAYXXXXXXXXXXXMGRVDSQEDLERSHNGSRQQDPYQSSGAEDD 674
+E E G S E+ E+ + ++ + SG+E +
Sbjct: 367 RKAQLENHEPEEEEEEEMETEEKEAG--GSDEEQEKGSSSEKEGSEDERSGSESE 419
Score = 40 (19.1 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 655 RSHNGSRQQDPYQSSGAE 672
RSH+ SR P+ S G+E
Sbjct: 494 RSHSRSRSASPFPS-GSE 510
>UNIPROTKB|Q6P2Y1 [details] [associations]
symbol:paf1 "RNA polymerase II-associated factor 1 homolog"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0000993 "RNA polymerase II core binding"
evidence=ISS] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISS]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] GO:GO:0045944 GO:GO:0006351 GO:GO:0000122
GO:GO:0032968 GO:GO:0016593 GO:GO:0000993 CTD:54623
eggNOG:NOG297168 HOGENOM:HOG000115425 HOVERGEN:HBG053131 KO:K15174
OrthoDB:EOG46HG9T InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985
EMBL:BC064253 RefSeq:NP_989348.1 UniGene:Str.20185
ProteinModelPortal:Q6P2Y1 STRING:Q6P2Y1 GeneID:394974
KEGG:xtr:394974 Xenbase:XB-GENE-5797651 InParanoid:Q6P2Y1
Uniprot:Q6P2Y1
Length = 520
Score = 222 (83.2 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
Identities = 88/352 (25%), Positives = 151/352 (42%)
Query: 268 GERTENRLKKP--TTFLCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQ 325
G R+ + P + +C++K+ N LP+ PK + D++RF +Y +SLEK +K
Sbjct: 14 GHRSSSHRTVPERSGVVCRVKYCNTLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHD 73
Query: 326 LHVEXXXXXXXXXXXXSVYNPPSXXXXXXXXXXXXXXXXXXXTPVKKDGIKRKERPTDKG 385
L E + NP + KR ++ K
Sbjct: 74 LLTEPDLGVTI-----DLINPDTYRIDPNVTLDIADEKLLEEEIQAPSSSKRSQQHA-KV 127
Query: 386 VSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIE 439
V W+ KT+YIS E R ++ ++ E+K G S+ + DR+ QI IE
Sbjct: 128 VPWMRKTEYIST---EFNRYGVSNEKP----EVKIGVSVKQQFTEEDIYKDRDSQISAIE 180
Query: 440 ASFEACKLRPI--HATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTA-DSEIYSKMD 496
+FE + +PI H + + PVE++P+ PDF+ + + FD P D+ + +D
Sbjct: 181 KTFEDAQ-KPISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDASGSAALD 239
Query: 497 KSVRDAHESRAIMKSYVATGSDSANPEKFLAYMVPSVNELSKDMYDENE-------DV-S 548
S+A+++ + + N +F+AY +P + K D+ E D+
Sbjct: 240 MM------SQAMIRGMM---DEEGN--QFVAYFLPGEETMRKRKRDQEEGLDYMPEDIYD 288
Query: 549 FSWVREYHWDVRGDDADD-PTTYLVSF-DDDEARYVPLPTKLNLRKKRAIEG 598
+ REY+W+V+ + Y F + D Y L T++ L K+R G
Sbjct: 289 YKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRVKAG 340
Score = 167 (63.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 77/319 (24%), Positives = 136/319 (42%)
Query: 376 KRKERPTDKGVSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSILENLN------ 429
KR ++ K V W+ KT+YIS E R ++ ++ E+K G S+ +
Sbjct: 119 KRSQQHA-KVVPWMRKTEYIST---EFNRYGVSNEKP----EVKIGVSVKQQFTEEDIYK 170
Query: 430 DRERQIKEIEASFEACKLRPI--HATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTA 487
DR+ QI IE +FE + +PI H + + PVE++P+ PDF+ + + FD P
Sbjct: 171 DRDSQISAIEKTFEDAQ-KPISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAP 229
Query: 488 DSEIYSKMDKSVRDAHESRAI--MKSYVATGSDSANPEKFLAYMVPSVNELSKDMYDENE 545
+DA S A+ M + G +F+AY +P + K D+ E
Sbjct: 230 ------------KDASGSAALDMMSQAMIRGMMDEEGNQFVAYFLPGEETMRKRKRDQEE 277
Query: 546 -------DV-SFSWVREYHWDVRGDDADD-PTTYLVSF-DDDEARYVPLPTKLNLRKKRA 595
D+ + REY+W+V+ + Y F + D Y L T++ L K+R
Sbjct: 278 GLDYMPEDIYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRV 337
Query: 596 IEGRSNDEVEHFPIPSSIAVRRRANVTAIELKEQGAYXXXXXXXXXXXMGRVDSQEDLER 655
G + +++ V + ++ EL+ Q A + + ++++
Sbjct: 338 KAGVQSGT-------NAVLVVKHRDMHEKELEAQEARRAQLENHEPEE----EEEIEVDQ 386
Query: 656 SHNGSRQQDPYQSSGAEDD 674
GS +D + SG+E +
Sbjct: 387 ETQGSDAEDGEKGSGSEKE 405
Score = 37 (18.1 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 648 DSQEDLERSHNGSRQQDPYQSSGAEDDMYD 677
+ +E+ E S +D + G++DD D
Sbjct: 427 EDEEEKESSEEDRAARDKEEIFGSDDDDSD 456
>UNIPROTKB|A2BD83 [details] [associations]
symbol:paf1 "RNA polymerase II-associated factor 1 homolog"
species:8355 "Xenopus laevis" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000993 "RNA polymerase II core binding" evidence=ISS]
[GO:0016593 "Cdc73/Paf1 complex" evidence=ISS] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] GO:GO:0045944 GO:GO:0006351 GO:GO:0000122
GO:GO:0032968 GO:GO:0016593 GO:GO:0000993 CTD:54623
HOVERGEN:HBG053131 KO:K15174 InterPro:IPR007133 PANTHER:PTHR23188
Pfam:PF03985 EMBL:BC130057 RefSeq:NP_001086458.1 UniGene:Xl.29705
GeneID:446278 KEGG:xla:446278 Xenbase:XB-GENE-5797702
Uniprot:A2BD83
Length = 524
Score = 214 (80.4 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 87/351 (24%), Positives = 150/351 (42%)
Query: 268 GERTENRLKKP--TTFLCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQ 325
G R+ + P + +C++K+ N LP+ PK + D++RF +Y +SLEK +K
Sbjct: 14 GHRSSSHRTVPERSGVVCRVKYCNTLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHD 73
Query: 326 LHVEXXXXXXXXXXXXSVYNPPSXXXXXXXXXXXXXXXXXXXTPVKKDGIKRKERPTDKG 385
L E + NP + KR ++ K
Sbjct: 74 LLTEPDLGVTI-----DLINPDTYRIDPNVTLDFADEKLLEEEIQAPSSSKRSQQHA-KV 127
Query: 386 VSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIE 439
V W+ KT+YIS E R ++ ++ E+K G S+ + DR+ QI IE
Sbjct: 128 VPWMRKTEYIST---EFNRYGVSNEKP----EVKIGVSVKQQFTEEDIYKDRDSQISAIE 180
Query: 440 ASFE-ACKLRPIHATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTA-DSEIYSKMDK 497
+F+ A K H + + PVE++P+ PDF+ + + FD P D+ + +D
Sbjct: 181 KTFDDAQKDISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDASGTAALDM 240
Query: 498 SVRDAHESRAIMKSYVATGSDSANPEKFLAYMVPSVNELSKDMYDENE-------DV-SF 549
S+A+++ + + N +F+AY +P + + K D+ E D+ +
Sbjct: 241 M------SQAMIRGMM---DEEGN--QFVAYFLPGEDTMRKRKRDQEEGLDYMPEDIYDY 289
Query: 550 SWVREYHWDVRGDDADD-PTTYLVSF-DDDEARYVPLPTKLNLRKKRAIEG 598
REY+W+V+ + Y F + D Y L T++ L K+R G
Sbjct: 290 KIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRVKAG 340
Score = 157 (60.3 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 75/317 (23%), Positives = 140/317 (44%)
Query: 376 KRKERPTDKGVSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSILENLN------ 429
KR ++ K V W+ KT+YIS E R ++ ++ E+K G S+ +
Sbjct: 119 KRSQQHA-KVVPWMRKTEYIST---EFNRYGVSNEKP----EVKIGVSVKQQFTEEDIYK 170
Query: 430 DRERQIKEIEASFE-ACKLRPIHATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTA- 487
DR+ QI IE +F+ A K H + + PVE++P+ PDF+ + + FD P
Sbjct: 171 DRDSQISAIEKTFDDAQKDISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPK 230
Query: 488 DSEIYSKMDKSVRDAHESRAIMKSYVATGSDSANPEKFLAYMVPSVNELSKDMYDENE-- 545
D+ + +D S+A+++ + + N +F+AY +P + + K D+ E
Sbjct: 231 DASGTAALDMM------SQAMIRGMM---DEEGN--QFVAYFLPGEDTMRKRKRDQEEGL 279
Query: 546 -----DV-SFSWVREYHWDVRGDDADD-PTTYLVSF-DDDEARYVPLPTKLNLRKKRAIE 597
D+ + REY+W+V+ + Y F + D Y L T++ L K+R
Sbjct: 280 DYMPEDIYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRVKA 339
Query: 598 GRSNDEVEHFPIPSSIAVRRRANVTAIELKEQGAYXXXXXXXXXXXMGRVDSQEDLERSH 657
G + +++ V + ++ EL+ Q A + + +++R
Sbjct: 340 GVQSGT-------NALLVVKHRDMHEKELEAQEARRAQLENHEPEE----EEEIEVDRDT 388
Query: 658 NGSRQQDPYQSSGAEDD 674
GS ++ + SG+E +
Sbjct: 389 QGSDAEEGEKGSGSEKE 405
>UNIPROTKB|B4DGJ5 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] GO:GO:0005739 GO:GO:0005634 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 EMBL:AC005239 UniGene:Hs.466714
HGNC:HGNC:25459 ChiTaRS:PAF1 EMBL:AK294625 IPI:IPI00908865
STRING:B4DGJ5 Ensembl:ENST00000416728 Uniprot:B4DGJ5
Length = 288
Score = 149 (57.5 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 62/230 (26%), Positives = 100/230 (43%)
Query: 376 KRKERPTDKGVSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSILENLN------ 429
KR ++ K V W+ KT+YIS E R ++ ++ E+K G S+ +
Sbjct: 66 KRSQQHA-KVVPWMRKTEYIST---EFNRYGISNEKP----EVKIGVSVKQQFTEEEIYK 117
Query: 430 DRERQIKEIEASFE-ACKLRPIHATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTAD 488
DR+ QI IE +FE A K H + + PVE++P+ PDF+ + + FD P
Sbjct: 118 DRDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDP--- 174
Query: 489 SEIYSKMDKSVRDAHESRAIMKSYVATGSDSANPEKFLAYMVPSVNELSKDMYDENEDVS 548
+ D S A E +M + G +F+AY +P L K D+ E++
Sbjct: 175 ----APKDTSGAAALE---MMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMD 227
Query: 549 FS--------WVREYHWDVRGDDADD-PTTYLVSF-DDDEARYVPLPTKL 588
++ REY+W+V+ + Y F + D Y L T +
Sbjct: 228 YAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETSI 277
>UNIPROTKB|F8W9Q2 [details] [associations]
symbol:PAF1 "RNA polymerase II-associated factor 1 homolog"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] GO:GO:0005739 GO:GO:0005634 InterPro:IPR007133
PANTHER:PTHR23188 Pfam:PF03985 EMBL:AC005239 HGNC:HGNC:25459
ChiTaRS:PAF1 IPI:IPI01025379 ProteinModelPortal:F8W9Q2
Ensembl:ENST00000221266 UCSC:uc002ole.1 ArrayExpress:F8W9Q2
Bgee:F8W9Q2 Uniprot:F8W9Q2
Length = 462
Score = 112 (44.5 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 44/168 (26%), Positives = 70/168 (41%)
Query: 282 LCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEXXXXXXXXXXXX 341
+C++K+ N LP+ PK + D++RF +Y +SLEK +K L E
Sbjct: 20 VCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTI----- 74
Query: 342 SVYNPPSXXXXXXXXXXXXXXXXXXXTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSME 401
+ NP + KR ++ K V W+ KT+YIS E
Sbjct: 75 DLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHA-KVVPWMRKTEYIST---E 130
Query: 402 SARQSLTEKQAKELREMKGGRSILENLN------DRERQIKEIEASFE 443
R ++ ++ E+K G S+ + DR+ QI IE +FE
Sbjct: 131 FNRYGISNEKP----EVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFE 174
Score = 86 (35.3 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 29/122 (23%), Positives = 53/122 (43%)
Query: 489 SEIYSKMDKSVRDAHESRAI--MKSYVATGSDSANPEKFLAYMVPSVNELSKDMYDENED 546
+++ D + +D + A+ M + G +F+AY +P L K D+ E+
Sbjct: 186 AQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEE 245
Query: 547 VSFS--------WVREYHWDVRGDDADD-PTTYLVSF-DDDEARYVPLPTKLNLRKKRAI 596
+ ++ REY+W+V+ + Y F + D Y L T++ L K+RA
Sbjct: 246 MDYAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAK 305
Query: 597 EG 598
G
Sbjct: 306 AG 307
Score = 38 (18.4 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 608 PIPSSIAVRRRANVTAIELK 627
P+PS +A R A++L+
Sbjct: 406 PVPSPVAASTRPRRMAVKLQ 425
>WB|WBGene00008338 [details] [associations]
symbol:C55A6.9 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0010171 GO:GO:0040011
GO:GO:0006351 GO:GO:0040035 GO:GO:0016593 eggNOG:NOG297168
KO:K15174 InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985
EMBL:Z81051 PIR:T20261 RefSeq:NP_505925.1 ProteinModelPortal:P90783
DIP:DIP-27306N MINT:MINT-1084850 STRING:P90783 PaxDb:P90783
EnsemblMetazoa:C55A6.9 GeneID:179583 KEGG:cel:CELE_C55A6.9
UCSC:C55A6.9 CTD:179583 WormBase:C55A6.9
GeneTree:ENSGT00390000001474 HOGENOM:HOG000022517 InParanoid:P90783
OMA:VEMMSQA NextBio:906030 Uniprot:P90783
Length = 425
Score = 148 (57.2 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 68/269 (25%), Positives = 128/269 (47%)
Query: 375 IKRKERPTDKGVSWLVKTQYISPLSMESARQSLT-EKQAKELR-EMKGGRSILENLNDRE 432
I ++ + K V W+ KT+YIS E R +T ++Q +L +K + + + D++
Sbjct: 109 IAKRSQQHSKLVPWMRKTEYIST---EFNRFGVTADRQETKLGYNLKKNQQVEDMYRDKQ 165
Query: 433 RQIKEIEASFEACKLRPI--HATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSE 490
QI I +FE + +P+ H + K ++ VE + PDF+ + F FDG T +E
Sbjct: 166 SQIDAINKTFEDVR-KPVKEHYSKKGVKAVEESFVFPDFDHWKHLFAHVQFDG-DTITTE 223
Query: 491 IYSKMDKSVRDAHESRAIMKSYVATGSDSANPEKFLAYMVPSVNELSKDMYD---E---N 544
+ + D+ + A ES +++K+ +KF A VP++ L+ M D E +
Sbjct: 224 -FEEEDER-QQARES-SVIKAM------EFEDQKFAAVFVPTIGCLTSFMDDLELERPFD 274
Query: 545 EDVSFSWV--REYHWDVRGDDADDPTTYLVSFDDDEARY--VPLPTKLNLRKKRAIEGRS 600
ED+ + ++ REY + + D +++ ++ +Y V K+ + K A+ +S
Sbjct: 275 EDMKYEFLLSREYTFKMEHLPPRDRDVFIMYHRNNVFQYNEVDCNVKMTRKPKMALSRKS 334
Query: 601 NDEVEHFPIPSSIAVRRRANVTAIELKEQ 629
+ + PS + ++ N EL EQ
Sbjct: 335 KLTLT-YRNPSELE-QKDMNKREAELYEQ 361
>UNIPROTKB|P90783 [details] [associations]
symbol:C55A6.9 "RNA polymerase II-associated factor 1
homolog" species:6239 "Caenorhabditis elegans" [GO:0016593
"Cdc73/Paf1 complex" evidence=ISS] GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0006355 GO:GO:0010171
GO:GO:0040011 GO:GO:0006351 GO:GO:0040035 GO:GO:0016593
eggNOG:NOG297168 KO:K15174 InterPro:IPR007133 PANTHER:PTHR23188
Pfam:PF03985 EMBL:Z81051 PIR:T20261 RefSeq:NP_505925.1
ProteinModelPortal:P90783 DIP:DIP-27306N MINT:MINT-1084850
STRING:P90783 PaxDb:P90783 EnsemblMetazoa:C55A6.9 GeneID:179583
KEGG:cel:CELE_C55A6.9 UCSC:C55A6.9 CTD:179583 WormBase:C55A6.9
GeneTree:ENSGT00390000001474 HOGENOM:HOG000022517 InParanoid:P90783
OMA:VEMMSQA NextBio:906030 Uniprot:P90783
Length = 425
Score = 148 (57.2 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 68/269 (25%), Positives = 128/269 (47%)
Query: 375 IKRKERPTDKGVSWLVKTQYISPLSMESARQSLT-EKQAKELR-EMKGGRSILENLNDRE 432
I ++ + K V W+ KT+YIS E R +T ++Q +L +K + + + D++
Sbjct: 109 IAKRSQQHSKLVPWMRKTEYIST---EFNRFGVTADRQETKLGYNLKKNQQVEDMYRDKQ 165
Query: 433 RQIKEIEASFEACKLRPI--HATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSE 490
QI I +FE + +P+ H + K ++ VE + PDF+ + F FDG T +E
Sbjct: 166 SQIDAINKTFEDVR-KPVKEHYSKKGVKAVEESFVFPDFDHWKHLFAHVQFDG-DTITTE 223
Query: 491 IYSKMDKSVRDAHESRAIMKSYVATGSDSANPEKFLAYMVPSVNELSKDMYD---E---N 544
+ + D+ + A ES +++K+ +KF A VP++ L+ M D E +
Sbjct: 224 -FEEEDER-QQARES-SVIKAM------EFEDQKFAAVFVPTIGCLTSFMDDLELERPFD 274
Query: 545 EDVSFSWV--REYHWDVRGDDADDPTTYLVSFDDDEARY--VPLPTKLNLRKKRAIEGRS 600
ED+ + ++ REY + + D +++ ++ +Y V K+ + K A+ +S
Sbjct: 275 EDMKYEFLLSREYTFKMEHLPPRDRDVFIMYHRNNVFQYNEVDCNVKMTRKPKMALSRKS 334
Query: 601 NDEVEHFPIPSSIAVRRRANVTAIELKEQ 629
+ + PS + ++ N EL EQ
Sbjct: 335 KLTLT-YRNPSELE-QKDMNKREAELYEQ 361
>SGD|S000000483 [details] [associations]
symbol:PAF1 "Component of the Paf1p complex involved in
transcription elongation" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0051569 "regulation of
histone H3-K4 methylation" evidence=IMP] [GO:0000993 "RNA
polymerase II core binding" evidence=IPI] [GO:0001076 "RNA
polymerase II transcription factor binding transcription factor
activity" evidence=IPI] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=IGI;IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IPI] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IMP] [GO:0001089 "TFIIF-class
binding transcription factor activity" evidence=IMP;IPI]
[GO:0031938 "regulation of chromatin silencing at telomere"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:2001166 "regulation of histone H2B
ubiquitination" evidence=IMP] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IMP] [GO:0031124 "mRNA 3'-end
processing" evidence=IMP] [GO:0000114 "regulation of transcription
involved in G1 phase of mitotic cell cycle" evidence=IMP]
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0034401 "regulation of
transcription by chromatin organization" evidence=IMP] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:2001173 "regulation
of histone H2B conserved C-terminal lysine ubiquitination"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0031126 "snoRNA 3'-end processing" evidence=IMP] [GO:0001015
"snoRNA transcription from an RNA polymerase II promoter"
evidence=IMP;IDA] [GO:2001209 "positive regulation of transcription
elongation from RNA polymerase I promoter" evidence=IDA]
[GO:2001165 "positive regulation of phosphorylation of RNA
polymerase II C-terminal domain serine 2 residues" evidence=IMP]
[GO:0090262 "regulation of transcription-coupled
nucleotide-excision repair" evidence=IGI] [GO:0070911 "global
genome nucleotide-excision repair" evidence=IMP] [GO:0006362
"transcription elongation from RNA polymerase I promoter"
evidence=IMP] [GO:2001163 "regulation of phosphorylation of RNA
polymerase II C-terminal domain serine 2 residues" evidence=IMP]
[GO:2001255 "positive regulation of histone H3-K36 trimethylation"
evidence=IMP] [GO:0000983 "RNA polymerase II core promoter
sequence-specific DNA binding transcription factor activity"
evidence=IDA] SGD:S000000483 GO:GO:0003682 EMBL:BK006936
GO:GO:0070911 GO:GO:0000122 GO:GO:0000114 GO:GO:0000183
GO:GO:0034401 GO:GO:0006368 GO:GO:0000983 EMBL:X76053 GO:GO:0035327
GO:GO:0031938 GO:GO:0006364 GO:GO:0045910 GO:GO:0032968
GO:GO:0051569 GO:GO:0006362 GO:GO:0016593 GO:GO:0001089
GO:GO:2001255 GO:GO:2001165 GO:GO:2001209 GO:GO:2001173
GO:GO:0090262 GO:GO:0031124 GO:GO:0031126 GO:GO:0001015 KO:K15174
InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985
GeneTree:ENSGT00390000001474 OrthoDB:EOG40S3R0 EMBL:Z36148
PIR:S44541 RefSeq:NP_009838.1 ProteinModelPortal:P38351
DIP:DIP-1149N IntAct:P38351 MINT:MINT-600620 STRING:P38351
PaxDb:P38351 PeptideAtlas:P38351 PRIDE:P38351 EnsemblFungi:YBR279W
GeneID:852582 KEGG:sce:YBR279W CYGD:YBR279w eggNOG:NOG276051
HOGENOM:HOG000000738 OMA:LEEDEWI NextBio:971727
Genevestigator:P38351 GermOnline:YBR279W Uniprot:P38351
Length = 445
Score = 127 (49.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 57/214 (26%), Positives = 95/214 (44%)
Query: 386 VSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSILENLNDRERQIKEIEASFEAC 445
V++L +T+Y+S SL K R + G S ENL D I +E +F
Sbjct: 115 VTFLRRTEYVSNTIAAHDNTSLKRK-----RRLDDGDSDDENL-DVNHIISRVEGTFNKT 168
Query: 446 KLRPIHATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSV-RDAH- 503
+ H K ++ V+ LLPD D + F G+ + D++ ++ + R
Sbjct: 169 D-KWQHPVKKGVKMVKKWDLLPDTASMDQVYFILKFMGSASLDTKEKKSLNTGIFRPVEL 227
Query: 504 ESRAIMKSYVATGSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFSWVREYHWDVRGDD 563
E + Y DSA E L ++E+ D + E + F +R+Y D++
Sbjct: 228 EEDEWISMYATDHKDSAILENELE---KGMDEMDDDSH-EGKIYKFKRIRDY--DMK-QV 280
Query: 564 ADDPTTYL-VSFDDDE--ARYVPLPTKLNLRKKR 594
A+ P T L + +D + A Y PL +K+ LR++R
Sbjct: 281 AEKPMTELAIRLNDKDGIAYYKPLRSKIELRRRR 314
Score = 57 (25.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 275 LKKPTTFLCKLKFRNELPEPSAQPKLM 301
+ K ++ +K++N LP P PKL+
Sbjct: 1 MSKKQEYIAPIKYQNSLPVPQLPPKLL 27
>CGD|CAL0000306 [details] [associations]
symbol:orf19.3613 species:5476 "Candida albicans" [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000983 "RNA polymerase II
core promoter sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0001089 "TFIIF-class binding
transcription factor activity" evidence=IEA] [GO:0000993 "RNA
polymerase II core binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex" evidence=IEA]
[GO:0035327 "transcriptionally active chromatin" evidence=IEA]
[GO:2001255 "positive regulation of histone H3-K36 trimethylation"
evidence=IEA] [GO:0090262 "regulation of transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0031124 "mRNA 3'-end
processing" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0006362 "transcription elongation from
RNA polymerase I promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0001015 "snoRNA transcription from an RNA
polymerase II promoter" evidence=IEA] [GO:0034401 "regulation of
transcription by chromatin organization" evidence=IEA] [GO:0051569
"regulation of histone H3-K4 methylation" evidence=IEA] [GO:2001173
"regulation of histone H2B conserved C-terminal lysine
ubiquitination" evidence=IEA] [GO:0070911 "global genome
nucleotide-excision repair" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0000114 "regulation of transcription
involved in G1 phase of mitotic cell cycle" evidence=IEA]
[GO:0031938 "regulation of chromatin silencing at telomere"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0031126 "snoRNA 3'-end processing"
evidence=IEA] [GO:2001209 "positive regulation of transcription
elongation from RNA polymerase I promoter" evidence=IEA]
[GO:2001165 "positive regulation of phosphorylation of RNA
polymerase II C-terminal domain serine 2 residues" evidence=IEA]
CGD:CAL0000306 EMBL:AACQ01000103 EMBL:AACQ01000102 KO:K15174
InterPro:IPR007133 PANTHER:PTHR23188 Pfam:PF03985
RefSeq:XP_714457.1 RefSeq:XP_714506.1 STRING:Q59Y36 GeneID:3643851
GeneID:3643910 KEGG:cal:CaO19.11096 KEGG:cal:CaO19.3613
eggNOG:KOG2478 Uniprot:Q59Y36
Length = 467
Score = 97 (39.2 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 34/112 (30%), Positives = 55/112 (49%)
Query: 386 VSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSILENLNDRERQIKEIEASFEAC 445
VS+L +T+YIS + +L A E ++K S E+ D + Q++ +E SF
Sbjct: 125 VSFLRRTEYISDRPLSKGGNNLNT--ATEEIKVKEKLSKDEHF-DADSQLQNVEESFTVA 181
Query: 446 K-----LRPI-HATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEI 491
L+ I H K+L+ V PLLPD D+ F+ F G+ + + E+
Sbjct: 182 NESLYDLKNIKHPKKKHLRAVNTWPLLPDTSMLDNVFLNLRFMGSASINREL 233
Score = 55 (24.4 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 271 TENRLKKPTT--FLCKLKFRNELPEPSAQPKLM 301
+ N+ KP ++ K+++ N LP P PK +
Sbjct: 2 SSNKSSKPIRQDYIAKVRYTNNLPPPPLNPKFI 34
Score = 50 (22.7 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 27/142 (19%), Positives = 58/142 (40%)
Query: 533 VNELSKDMYDENEDVSFSWVREYHWDVRGDDADDPTTYLVSFDDDEARYVPLPTKLNLRK 592
+N L +D + E F + + Y + + ++ + F DE P+ +K N ++
Sbjct: 315 INLLDEDE-ESLETYKFKYTKNYDMTYQPFEHENEEL-AIKFVSDEIED-PV-SKDNFKR 370
Query: 593 KRAIEGRSNDEVEHFPIPSSIAVRRRANVTAIELKEQGAYXXXXXXXXXXXMGRVDSQED 652
KR + ++PI I +++ T E+ + + + R S +
Sbjct: 371 KRKM-------AYYYPINGKIELKKHRASTNSEINK---FIKERTYDGINFILREPSTNE 420
Query: 653 LERSHNGSRQQDPYQSSGAEDD 674
L+RS + DP + G +++
Sbjct: 421 LKRSDTIRSEYDPMEYEGEDEE 442
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.128 0.366 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 677 473 0.00099 118 3 11 23 0.48 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 604 (64 KB)
Total size of DFA: 270 KB (2143 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 43.63u 0.14s 43.77t Elapsed: 00:00:02
Total cpu time: 43.63u 0.14s 43.77t Elapsed: 00:00:02
Start: Fri May 10 06:16:03 2013 End: Fri May 10 06:16:05 2013