Query 005794
Match_columns 677
No_of_seqs 207 out of 252
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 13:49:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03985 Paf1: Paf1 ; InterPr 100.0 1.4E-73 3E-78 624.4 24.1 357 279-665 1-394 (436)
2 KOG2478 Putative RNA polymeras 100.0 6.9E-56 1.5E-60 475.4 16.6 319 277-632 14-359 (452)
3 KOG2478 Putative RNA polymeras 99.5 3.1E-14 6.7E-19 154.9 4.2 325 201-554 123-452 (452)
4 KOG1924 RhoA GTPase effector D 98.7 3.3E-08 7.2E-13 113.3 8.7 11 436-446 897-907 (1102)
5 KOG1924 RhoA GTPase effector D 98.5 6.7E-07 1.4E-11 102.9 11.1 9 217-225 659-667 (1102)
6 KOG1923 Rac1 GTPase effector F 97.7 0.00031 6.7E-09 81.7 12.8 34 190-223 377-412 (830)
7 PHA03247 large tegument protei 96.8 0.037 8.1E-07 71.9 18.0 10 620-629 3128-3137(3151)
8 KOG3671 Actin regulatory prote 96.7 0.023 5E-07 64.0 13.4 8 46-53 331-338 (569)
9 KOG1830 Wiskott Aldrich syndro 95.0 1.5 3.3E-05 49.2 18.0 30 212-241 469-498 (518)
10 KOG4849 mRNA cleavage factor I 87.2 6.2 0.00013 43.6 11.4 8 313-320 416-423 (498)
11 KOG1923 Rac1 GTPase effector F 86.1 2 4.3E-05 51.3 7.6 12 202-213 386-397 (830)
12 KOG2236 Uncharacterized conser 80.7 8.8 0.00019 43.8 9.5 10 95-104 444-453 (483)
13 KOG2236 Uncharacterized conser 80.3 4.6 0.0001 45.9 7.2 7 103-109 449-455 (483)
14 KOG0559 Dihydrolipoamide succi 67.9 19 0.0004 40.3 7.8 18 217-234 233-250 (457)
15 PRK15319 AIDA autotransporter- 59.6 16 0.00034 48.0 6.1 8 476-483 1920-1927(2039)
16 PF07174 FAP: Fibronectin-atta 57.6 1.3E+02 0.0028 32.7 11.5 9 170-178 131-139 (297)
17 KOG1984 Vesicle coat complex C 49.2 4.3E+02 0.0094 33.2 15.2 23 278-301 399-421 (1007)
18 COG5178 PRP8 U5 snRNP spliceos 48.5 13 0.00029 46.5 2.9 17 285-302 149-165 (2365)
19 KOG0132 RNA polymerase II C-te 45.8 1.3E+02 0.0028 37.0 10.1 23 63-85 611-633 (894)
20 KOG0119 Splicing factor 1/bran 44.4 1E+02 0.0022 36.0 8.7 18 30-47 466-483 (554)
21 COG5178 PRP8 U5 snRNP spliceos 41.6 21 0.00045 45.0 3.0 9 551-559 480-488 (2365)
22 PRK15319 AIDA autotransporter- 40.8 45 0.00097 44.2 5.9 13 471-483 1910-1922(2039)
23 KOG1925 Rac1 GTPase effector F 37.4 66 0.0014 37.5 6.0 37 350-398 414-450 (817)
24 PHA03378 EBNA-3B; Provisional 37.1 6.6E+02 0.014 30.9 13.9 13 40-52 658-670 (991)
25 KOG1985 Vesicle coat complex C 36.4 3E+02 0.0065 34.2 11.3 29 278-306 278-306 (887)
26 KOG4849 mRNA cleavage factor I 35.9 2.5E+02 0.0054 31.7 9.8 30 76-106 262-291 (498)
27 KOG2391 Vacuolar sorting prote 31.7 4.7E+02 0.01 29.5 11.0 10 202-211 213-222 (365)
28 PF03154 Atrophin-1: Atrophin- 31.4 1.2E+03 0.026 29.7 19.4 28 277-305 674-708 (982)
29 KOG0307 Vesicle coat complex C 26.7 1.1E+03 0.024 30.3 14.2 16 30-45 741-756 (1049)
30 KOG3088 Secretory carrier memb 26.2 1.2E+02 0.0027 33.1 5.5 18 217-234 72-89 (313)
31 PRK09752 adhesin; Provisional 26.2 70 0.0015 40.8 4.2 6 101-106 909-914 (1250)
32 PF01690 PLRV_ORF5: Potato lea 20.3 82 0.0018 36.4 2.9 9 283-291 126-134 (465)
33 PRK15313 autotransport protein 20.0 2.4E+02 0.0053 35.4 6.9 12 471-482 822-833 (955)
No 1
>PF03985 Paf1: Paf1 ; InterPro: IPR007133 Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i [, ].
Probab=100.00 E-value=1.4e-73 Score=624.41 Aligned_cols=357 Identities=34% Similarity=0.610 Sum_probs=265.6
Q ss_pred cccccccccccCCCCCCCCCceeeccC-CccccccCcCcchhhccCCCCcc--CCCCCcccccC--------CccCCCCC
Q 005794 279 TTFLCKLKFRNELPEPSAQPKLMALKK-DKDRFTRYTFSSLEKNYKPQLHV--EPDLGIPLDLL--------DLSVYNPP 347 (677)
Q Consensus 279 ~~fi~~iry~N~LP~pP~~PKLL~~p~-d~~r~t~y~~tSLe~~~k~~i~~--D~DLGmPLDLi--------~~~~Y~~p 347 (677)
++|||+|||+|+||+|||+||||.|++ +..+++.|.++||++++++.|++ |+||||||||| |.++|+.+
T Consensus 1 qd~i~~iry~N~LP~pp~~pK~L~~p~~~~~~~~~~~~tsL~~~~~~~~l~~~d~dlGmplDLi~~~g~~~~d~~~~~~~ 80 (436)
T PF03985_consen 1 QDFICRIRYRNNLPPPPFPPKFLDIPFTDEQRFSPYFATSLEREYKFNILVEVDADLGMPLDLIGIPGVFEGDPSAYNAP 80 (436)
T ss_pred CceeeeeeecCCCcccCCCCeeecCCCCchhccccchhhhHHHhcCcceecccccccCcccccccccCcccCChhhcCCC
Confidence 689999999999999999999999999 78999999999999999999966 99999999999 77888887
Q ss_pred CCCCCCChhhhhccCCCCccCcccccCCcccCCCCCCCccCccccccccccchhhhhchhhHHHHHHHHhhhcCCchh--
Q 005794 348 SVRPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSIL-- 425 (677)
Q Consensus 348 d~~~~LdPeD~aLLrD~e~~~p~~s~Gi~kksR~~~~~VSWLRRTEYISs~~~~~~~~~~t~kqake~~E~k~G~~~~-- 425 (677)
...++|||+|++||+|+.++ ++++.++++|||||||||||++.++.+ .+. ...+.+.|+.+.
T Consensus 81 ~~~~~L~p~D~~LL~d~~~~---------~~~~~~~~~VswLRrTeYiS~~~~~~~-~~~------~~~~~~~~~~~~~~ 144 (436)
T PF03985_consen 81 PNNPPLDPEDRALLRDPGAL---------KRSKPDAKNVSWLRRTEYISSEFTRKG-QSK------EKSEAKRGRNVKKK 144 (436)
T ss_pred CCCCCCCHHHHHHhcCcccc---------ccccCCcCCCcccccceeecccccccc-ccc------cchhhccccccccc
Confidence 77889999999999998653 246667789999999999999876543 111 112233443332
Q ss_pred ----ccccCHHHHHHHHHhhHHHHhc---CCCCCCCCCCceeEeecCCCCcccccCceEEEEEcCCCCCCchhhcccChh
Q 005794 426 ----ENLNDRERQIKEIEASFEACKL---RPIHATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKS 498 (677)
Q Consensus 426 ----~~~~dresQI~aIEkTFeaAkk---~lkHPtKpnLkaVev~PLLPD~d~w~n~Yv~VkFD~dPs~~~e~~~kl~~s 498 (677)
+.+.++++||++||+||++|++ .++||||||||||++|||||||++|++.|++|+||++|+.+..... .
T Consensus 145 ~~~~~~~~d~~~qi~~Ie~tF~~a~~~~~~~~HPtK~~lk~Ve~~PllPD~~~~~~~y~~v~Fd~~P~~~~~~~~----~ 220 (436)
T PF03985_consen 145 FKEEELYNDRESQIRAIEKTFEAAKKDLPRLKHPTKPNLKAVEVWPLLPDFDAWPNPYVQVKFDGDPAPDDKEKE----E 220 (436)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhhccccccCCCCCCCeEEEEecCCCCchhcCCceEEEEECCCCcccccccc----c
Confidence 2368999999999999999987 7999999999999999999999999999999999999986542211 1
Q ss_pred hhhHHHHHHHHhhhhccCCCCCCcceeEEeecCCcc-------ccccc---c----cCCCCCeecceeeeeeceeccCCC
Q 005794 499 VRDAHESRAIMKSYVATGSDSANPEKFLAYMVPSVN-------ELSKD---M----YDENEDVSFSWVREYHWDVRGDDA 564 (677)
Q Consensus 499 ~r~~~es~Ailk~~~~~~~D~~~~e~flaY~lP~~~-------el~k~---l----~dede~~~Yk~vReYd~~v~~~~~ 564 (677)
........+|++++. .++++||+||||+.. .+.+. . +++++.|.|+|||+|+|++++...
T Consensus 221 ~~~~~~~~~i~~p~~------~~~~~fvsy~lP~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~y~~vReY~~~~~~~~~ 294 (436)
T PF03985_consen 221 QEEQALQAAIFRPMD------SEGDQFVSYYLPDKEDAKELKEKLEKNSPDRDEEDDDDDEEYEYKRVREYEWSVQNEAS 294 (436)
T ss_pred hhHHHHhhhccCCCC------CCCcceeeEEecChhhhhHhHHhhhcccccccccccCCCceeeccceecccceeeccCC
Confidence 112222346777764 356789999999322 12211 1 245577999999999999986442
Q ss_pred -CCCceEEEE-EcCCceEEecCCCcceecccccccCCCCcccccCCCCceEEEeeccc-hHHHHHhhhcccccCCCCCCC
Q 005794 565 -DDPTTYLVS-FDDDEARYVPLPTKLNLRKKRAIEGRSNDEVEHFPIPSSIAVRRRAN-VTAIELKEQGAYSNSKGNSSS 641 (677)
Q Consensus 565 -~~~~e~~l~-Fddg~AyY~PL~tRi~LRKrRaK~~~~~dei~~f~~ps~Itv~~r~~-~~e~e~~e~~~~~~~~~~~~~ 641 (677)
.+..+|+|+ +++++||||||.+||+|||||.... ........+.+.|+|++|++ ..|+..++.... ..++..+
T Consensus 295 ~~~e~~i~f~~~~~k~ayY~pI~~Rv~LrkrR~~~~--~~~~~~~~~~d~i~V~~R~p~e~E~~~~~~~r~-~~dp~~~- 370 (436)
T PF03985_consen 295 KGYEENIFFVDFKQKAAYYYPIETRVRLRKRRTNSK--IRPKVREQRPDQITVKHRDPTEEEEAERDKRRA-QLDPIEY- 370 (436)
T ss_pred CCccceEEEEecCCCceEEeeccccceeeeeccccc--cccccccCCCceEEEEeCCCCHHHHHHHHHHHh-hccCCCc-
Confidence 445567777 6689999999999999999993322 22345567789999999975 566655554322 3344432
Q ss_pred CcCCCCCccchhhhccCCCCCCCC
Q 005794 642 SKMGRVDSQEDLERSHNGSRQQDP 665 (677)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~ 665 (677)
..+.+.+++++.++...+...++.
T Consensus 371 ~~~ee~eeeee~~~e~~~~~~e~~ 394 (436)
T PF03985_consen 371 EEEEEEEEEEEEEEEEEEEEEEED 394 (436)
T ss_pred cccCcccccccccccccccccccc
Confidence 222333333333344444433333
No 2
>KOG2478 consensus Putative RNA polymerase II regulator [Transcription]
Probab=100.00 E-value=6.9e-56 Score=475.44 Aligned_cols=319 Identities=30% Similarity=0.552 Sum_probs=254.5
Q ss_pred CCcccccccccccCCCCCCCCCceeeccCCccccccCcCcchhhccCCCCccCCCCCcccccCCccCCCC-C------CC
Q 005794 277 KPTTFLCKLKFRNELPEPSAQPKLMALKKDKDRFTRYTFSSLEKNYKPQLHVEPDLGIPLDLLDLSVYNP-P------SV 349 (677)
Q Consensus 277 r~~~fi~~iry~N~LP~pP~~PKLL~~p~d~~r~t~y~~tSLe~~~k~~i~~D~DLGmPLDLi~~~~Y~~-p------d~ 349 (677)
+.++|||+|+|.|.||+|||+||||.||++..+|+.|..++++.++++.+++|.||||++|||+...|.. + ..
T Consensus 14 rk~~~i~pvky~N~LP~pPfd~Kfl~yP~~p~~~~~y~~~~~~~q~k~~~i~d~dlg~pvdLi~~~~~~q~~~~~~~~~d 93 (452)
T KOG2478|consen 14 RKNDFICPVKYTNPLPDPPFDPKFLTYPFPPPRFVQYQPTSLYKQFKHDLITDPDLGMPVDLINDPGYDQDPNSLLDPAD 93 (452)
T ss_pred cccccccCcccCCCCCCCCCCcccccCCCCcchhhhcCccccccccccccccCCCCCCCccccCCccccCCchhhccccc
Confidence 5799999999999999999999999999999999999999999999999988999999999999976654 2 23
Q ss_pred CCCCChhhhhccCCCCccCcccccCCcccCCCCCCCccCccccccccccchhhhhchhhHHHHHHHHhhhcCCc------
Q 005794 350 RPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRS------ 423 (677)
Q Consensus 350 ~~~LdPeD~aLLrD~e~~~p~~s~Gi~kksR~~~~~VSWLRRTEYISs~~~~~~~~~~t~kqake~~E~k~G~~------ 423 (677)
...|+++|++||.+. ++..+++.|+|||+|||||.+.++...... ...+.+.|++
T Consensus 94 ~~~L~~~~rall~~~-------------R~~~h~~~vp~lrkteyiste~~r~~~~~~------~~~~~k~~~~~~k~~~ 154 (452)
T KOG2478|consen 94 SKLLEPRERALLKDK-------------RSQQHSKTVPWLRKTEYISTEFNRAKIEAH------DNLELKKGRSLKKNSQ 154 (452)
T ss_pred ccccChhhhcccccc-------------ccccccccccchhhhHHHHHHHHhhhhhcc------Cccchhhhhhcccccc
Confidence 456777777777653 234578899999999999998765432110 1112223332
Q ss_pred hhccccCHHHHHHHHHhhHHHHhcC-CCCCCCCCCceeEeecCCCCcccccCceEEEEEcCCCCCCchhhcccChhhhhH
Q 005794 424 ILENLNDRERQIKEIEASFEACKLR-PIHATNKNLQPVEILPLLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDA 502 (677)
Q Consensus 424 ~~~~~~dresQI~aIEkTFeaAkk~-lkHPtKpnLkaVev~PLLPD~d~w~n~Yv~VkFD~dPs~~~e~~~kl~~s~r~~ 502 (677)
..+.+.++++||++||+||+++.++ .+||+|++|++|++|+|||||++|.+.|++|+||.+|.... . .....
T Consensus 155 ~~~~~~d~~~Qi~aI~~tF~d~~kpl~~Hpskpgv~pV~~~~vfPDts~~k~~~~qV~fD~dp~~~~-~------~~~~~ 227 (452)
T KOG2478|consen 155 KEEMYKDVESQIKAIEKTFEDVQKPLRQHPSKPGVKPVEVWPVFPDTSMWKHLFAQVIFDLDPAPST-K------STIAE 227 (452)
T ss_pred hhhcccchHHHHhhhhhhhhhhcchhhhCCCCCCceeeeecccCCChhhhhCcceEEEecCCCCccc-c------cchHH
Confidence 2345689999999999999999987 68999999999999999999999999999999999998543 1 11223
Q ss_pred HH--HHHHHhhhhccCCCCCCcceeEEeecCCccccccc--------ccCCCCCeecceeeeeeceeccCCC-CCCceEE
Q 005794 503 HE--SRAIMKSYVATGSDSANPEKFLAYMVPSVNELSKD--------MYDENEDVSFSWVREYHWDVRGDDA-DDPTTYL 571 (677)
Q Consensus 503 ~e--s~Ailk~~~~~~~D~~~~e~flaY~lP~~~el~k~--------l~dede~~~Yk~vReYd~~v~~~~~-~~~~e~~ 571 (677)
|+ ..+||+++ +++.+++||+||||+..++.+. ++++++.+.|+.+|+|+|++++.+. .+..+++
T Consensus 228 le~~~~~~~~~~-----~~~e~e~fvs~~~p~ee~~~~~~~~~e~~~l~~eddv~ey~~~R~y~~~mk~~a~~~~~~~~f 302 (452)
T KOG2478|consen 228 LESMNESIFRGP-----MDEEGEQFVSYFLPTEETLKKRLADLEEEMLRDEDDVYEYKIAREYDWNMKGKASKGYTENYF 302 (452)
T ss_pred Hhhhchhheecc-----ccccchhhhheecCChhhhhhhhhhhhhcccccccchhhhhhhhcccchhccCCCccccceEE
Confidence 32 34666655 4567899999999998876643 3455677889999999999998885 5566777
Q ss_pred EEEc-CCceEEecCCCcceecccccccCCCCcccccCCCCceEEEeecc-chHHHHHhhhccc
Q 005794 572 VSFD-DDEARYVPLPTKLNLRKKRAIEGRSNDEVEHFPIPSSIAVRRRA-NVTAIELKEQGAY 632 (677)
Q Consensus 572 l~Fd-dg~AyY~PL~tRi~LRKrRaK~~~~~dei~~f~~ps~Itv~~r~-~~~e~e~~e~~~~ 632 (677)
|.++ +++|||++|.+||+|+|||+|.+.+... -+.|+|++|. +..|++++++..+
T Consensus 303 ~i~~~~~~v~yn~~~~rvrl~kr~vk~~~~~~~------i~~l~vs~r~~n~~e~~~~~~~~~ 359 (452)
T KOG2478|consen 303 FINDEDNQVYYNELETRVRLMKRRVKAGVSLNN------IDKLEVSLRDLNSKELEAQDKNRR 359 (452)
T ss_pred EEEecCCceeechHhhHHHHhhcccccccCccc------ccceeEeecCCCchHHHHHHHhhc
Confidence 7777 4789999999999999999998876543 3678999997 4777777777655
No 3
>KOG2478 consensus Putative RNA polymerase II regulator [Transcription]
Probab=99.46 E-value=3.1e-14 Score=154.92 Aligned_cols=325 Identities=24% Similarity=0.210 Sum_probs=237.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhccCCCCCCCcccccCCccccCCCCCcccccc-ccCCCc
Q 005794 201 VETEEERRIRKKREYEKHRQEEKHRLQMKESQNVVMQKSQMVASGKGGHGSMVGSRMGDRRAAPLLSGERTEN-RLKKPT 279 (677)
Q Consensus 201 ~e~~ee~~~r~~r~~~k~~~~ek~~q~~k~~q~~~~~~~q~~~~~~~~~~~~~~~r~~~~~~~~~~~~er~~~-~~~r~~ 279 (677)
.|..+|+..|.++......+-+++++++|.+|...|-+... ++. .++...-.++-.+ +.....
T Consensus 123 teyiste~~r~~~~~~~~~~~k~~~~~~k~~~~~~~~~d~~---------~Qi-------~aI~~tF~d~~kpl~~Hpsk 186 (452)
T KOG2478|consen 123 TEYISTEFNRAKIEAHDNLELKKGRSLKKNSQKEEMYKDVE---------SQI-------KAIEKTFEDVQKPLRQHPSK 186 (452)
T ss_pred hHHHHHHHHhhhhhccCccchhhhhhcccccchhhcccchH---------HHH-------hhhhhhhhhhcchhhhCCCC
Confidence 48899999998887777777788888776666644433221 110 0001111111121 333466
Q ss_pred ccccccccccCCCCCCCC-CceeeccCC--ccccccCcCcchhhccCCCCccCCCCCcccccCCccCCCCCCCCCCCChh
Q 005794 280 TFLCKLKFRNELPEPSAQ-PKLMALKKD--KDRFTRYTFSSLEKNYKPQLHVEPDLGIPLDLLDLSVYNPPSVRPPLDPE 356 (677)
Q Consensus 280 ~fi~~iry~N~LP~pP~~-PKLL~~p~d--~~r~t~y~~tSLe~~~k~~i~~D~DLGmPLDLi~~~~Y~~pd~~~~LdPe 356 (677)
.++|.|++.|-||+.-.- -+|+.+-+| ...++.+.+++|+. ....|.++.+++...+++.+.+|+.......|.+.
T Consensus 187 pgv~pV~~~~vfPDts~~k~~~~qV~fD~dp~~~~~~~~~~le~-~~~~~~~~~~~~e~e~fvs~~~p~ee~~~~~~~~~ 265 (452)
T KOG2478|consen 187 PGVKPVEVWPVFPDTSMWKHLFAQVIFDLDPAPSTKSTIAELES-MNESIFRGPMDEEGEQFVSYFLPTEETLKKRLADL 265 (452)
T ss_pred CCceeeeecccCCChhhhhCcceEEEecCCCCcccccchHHHhh-hchhheeccccccchhhhheecCChhhhhhhhhhh
Confidence 789999999999997764 567777776 46778888889987 66688889999999999999999987777889999
Q ss_pred hhhccCCCCccCcccccCCcccCCCCCCCccCccccccccccchhhhhchhhHHHHHHHHhhhcCCchhccccCHHHHHH
Q 005794 357 DEELLRDDEVVTPVKKDGIKRKERPTDKGVSWLVKTQYISPLSMESARQSLTEKQAKELREMKGGRSILENLNDRERQIK 436 (677)
Q Consensus 357 D~aLLrD~e~~~p~~s~Gi~kksR~~~~~VSWLRRTEYISs~~~~~~~~~~t~kqake~~E~k~G~~~~~~~~dresQI~ 436 (677)
+..+|++.+.+.. -+|.++-+.+.+.++|+-.|+|+....... .+..........+.+|.+.++....++ |.
T Consensus 266 e~~~l~~eddv~e---y~~~R~y~~~mk~~a~~~~~~~~f~i~~~~-~~v~yn~~~~rvrl~kr~vk~~~~~~~----i~ 337 (452)
T KOG2478|consen 266 EEEMLRDEDDVYE---YKIAREYDWNMKGKASKGYTENYFFINDED-NQVYYNELETRVRLMKRRVKAGVSLNN----ID 337 (452)
T ss_pred hhcccccccchhh---hhhhhcccchhccCCCccccceEEEEEecC-CceeechHhhHHHHhhcccccccCccc----cc
Confidence 9999999877554 355554556778999999999999876543 222333344445666665544333333 88
Q ss_pred HHHhhHHHHhcCCCCCCCCCCceeEeec-CCCCcccccCceEEEEEcCCCCCCchhhcccChhhhhHHHHHHHHhhhhcc
Q 005794 437 EIEASFEACKLRPIHATNKNLQPVEILP-LLPDFERYDDQFVAATFDGAPTADSEIYSKMDKSVRDAHESRAIMKSYVAT 515 (677)
Q Consensus 437 aIEkTFeaAkk~lkHPtKpnLkaVev~P-LLPD~d~w~n~Yv~VkFD~dPs~~~e~~~kl~~s~r~~~es~Ailk~~~~~ 515 (677)
.||-||++++..-.|-++++...+++++ ++++++-+...++ .-|++.+..+.+.....++..+.+-++.++.+-....
T Consensus 338 ~l~vs~r~~n~~e~~~~~~~~~~~e~~~~~~~~~Ee~e~e~~-~~~~~e~~~~se~~~~~~e~~~~ade~~~~~~e~~~~ 416 (452)
T KOG2478|consen 338 KLEVSLRDLNSKELEAQDKNRRQLEVLGFELELEEEYEEEEQ-EEILGEPEEDSEFFGSEDEGIEDADESSASEKEYQQR 416 (452)
T ss_pred ceeEeecCCCchHHHHHHHhhccccccccchhhhhhhHHHHH-hhhccCchhccccccccccccccccccccccchhhhc
Confidence 9999999999889999999999999999 8999999998888 8999999888876666666666666777888877765
Q ss_pred CCCCCCcceeEEeecCCcccccccccCCCCCeecceeee
Q 005794 516 GSDSANPEKFLAYMVPSVNELSKDMYDENEDVSFSWVRE 554 (677)
Q Consensus 516 ~~D~~~~e~flaY~lP~~~el~k~l~dede~~~Yk~vRe 554 (677)
+++. .+.+.++++|+.++....+.+.+ +..+.|+|+
T Consensus 417 ~~s~--~~s~~as~~ps~de~~~~~~~~~-e~~~s~~d~ 452 (452)
T KOG2478|consen 417 GEST--AESGSASDVPSLDEARADIRDKE-EISGSDSDE 452 (452)
T ss_pred ccch--hhhcccCCCCCccccccccCCcc-ccccccccC
Confidence 5432 37799999999998866655543 677888764
No 4
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=3.3e-08 Score=113.26 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=5.8
Q ss_pred HHHHhhHHHHh
Q 005794 436 KEIEASFEACK 446 (677)
Q Consensus 436 ~aIEkTFeaAk 446 (677)
..|.++|....
T Consensus 897 d~ikK~~~~m~ 907 (1102)
T KOG1924|consen 897 DEIKKNLQQME 907 (1102)
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 5
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=6.7e-07 Score=102.90 Aligned_cols=9 Identities=11% Similarity=-0.119 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 005794 217 KHRQEEKHR 225 (677)
Q Consensus 217 k~~~~ek~~ 225 (677)
|.+..-|++
T Consensus 659 fakL~~~Fa 667 (1102)
T KOG1924|consen 659 FAKLALKFA 667 (1102)
T ss_pred HHHHHHHhh
Confidence 444444444
No 6
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=97.71 E-value=0.00031 Score=81.72 Aligned_cols=34 Identities=18% Similarity=-0.017 Sum_probs=31.3
Q ss_pred CCcccCCCCCCc--ccHHHHHHHHHHHHHHHHHHHH
Q 005794 190 GVKKVNGGSGRV--ETEEERRIRKKREYEKHRQEEK 223 (677)
Q Consensus 190 ~~~~~~~~~g~~--e~~ee~~~r~~r~~~k~~~~ek 223 (677)
..-|-+|++||| +++||+++++++..+|+++|+.
T Consensus 377 ~alKP~qv~~tvf~~~~De~Il~~lD~~~~ee~Fk~ 412 (830)
T KOG1923|consen 377 LALKPIQVKGTVFHELNDEKILEALDFSRFEEQFKI 412 (830)
T ss_pred cccCccccccchhhhhhHHHHHHhhhHHHHHHHHHh
Confidence 346788999999 9999999999999999999999
No 7
>PHA03247 large tegument protein UL36; Provisional
Probab=96.82 E-value=0.037 Score=71.86 Aligned_cols=10 Identities=10% Similarity=-0.047 Sum_probs=3.8
Q ss_pred chHHHHHhhh
Q 005794 620 NVTAIELKEQ 629 (677)
Q Consensus 620 ~~~e~e~~e~ 629 (677)
++..|.++-.
T Consensus 3128 TR~~L~~~~~ 3137 (3151)
T PHA03247 3128 TRHALLDRSG 3137 (3151)
T ss_pred HHHHHHhhHH
Confidence 3333333333
No 8
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=96.68 E-value=0.023 Score=64.04 Aligned_cols=8 Identities=13% Similarity=-0.135 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q 005794 46 QNWGGYSN 53 (677)
Q Consensus 46 ~~~~~~~~ 53 (677)
++|++.+|
T Consensus 331 ~~gnq~p~ 338 (569)
T KOG3671|consen 331 PGGNQPPN 338 (569)
T ss_pred CCCCCCCc
Confidence 44544443
No 9
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=95.01 E-value=1.5 Score=49.19 Aligned_cols=30 Identities=17% Similarity=0.343 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccch
Q 005794 212 KREYEKHRQEEKHRLQMKESQNVVMQKSQM 241 (677)
Q Consensus 212 ~r~~~k~~~~ek~~q~~k~~q~~~~~~~q~ 241 (677)
||+-+++|+.|.++..+-+-=.+||.+-=+
T Consensus 469 LrKVeeqreqeakr~~v~ndvatiLsRRia 498 (518)
T KOG1830|consen 469 LRKVEEQREQEAKREAVENDVATILSRRIA 498 (518)
T ss_pred hHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 444445555555554433334445544333
No 10
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=87.24 E-value=6.2 Score=43.63 Aligned_cols=8 Identities=50% Similarity=0.463 Sum_probs=3.5
Q ss_pred CcCcchhh
Q 005794 313 YTFSSLEK 320 (677)
Q Consensus 313 y~~tSLe~ 320 (677)
..++||+.
T Consensus 416 vLissL~d 423 (498)
T KOG4849|consen 416 VLISSLED 423 (498)
T ss_pred HHHHHHHH
Confidence 33444443
No 11
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=86.13 E-value=2 Score=51.30 Aligned_cols=12 Identities=17% Similarity=-0.180 Sum_probs=6.8
Q ss_pred ccHHHHHHHHHH
Q 005794 202 ETEEERRIRKKR 213 (677)
Q Consensus 202 e~~ee~~~r~~r 213 (677)
.++=++...++.
T Consensus 386 ~tvf~~~~De~I 397 (830)
T KOG1923|consen 386 GTVFHELNDEKI 397 (830)
T ss_pred cchhhhhhHHHH
Confidence 555556555554
No 12
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.73 E-value=8.8 Score=43.76 Aligned_cols=10 Identities=20% Similarity=-0.061 Sum_probs=4.2
Q ss_pred CCCCCCCccc
Q 005794 95 QQQTQPSMYY 104 (677)
Q Consensus 95 ~~~~~~~~~~ 104 (677)
+.+++.+|++
T Consensus 444 ~~~P~~~mpp 453 (483)
T KOG2236|consen 444 QANPFNQMPP 453 (483)
T ss_pred ccCccccCCC
Confidence 3333344444
No 13
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.30 E-value=4.6 Score=45.93 Aligned_cols=7 Identities=14% Similarity=0.126 Sum_probs=4.0
Q ss_pred ccCCCcc
Q 005794 103 YYSSNQY 109 (677)
Q Consensus 103 ~~~~~~~ 109 (677)
|.-+..|
T Consensus 449 ~~mpp~~ 455 (483)
T KOG2236|consen 449 NQMPPAY 455 (483)
T ss_pred ccCCCCC
Confidence 4466665
No 14
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=67.86 E-value=19 Score=40.30 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 005794 217 KHRQEEKHRLQMKESQNV 234 (677)
Q Consensus 217 k~~~~ek~~q~~k~~q~~ 234 (677)
.-|+..+-++.+|.+||+
T Consensus 233 MnRmR~RIA~RLKdsQNt 250 (457)
T KOG0559|consen 233 MNRMRLRIAERLKDSQNT 250 (457)
T ss_pred hHHHHHHHHHHHHhhhhh
Confidence 456667777888888884
No 15
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=59.63 E-value=16 Score=48.00 Aligned_cols=8 Identities=13% Similarity=0.165 Sum_probs=3.8
Q ss_pred eEEEEEcC
Q 005794 476 FVAATFDG 483 (677)
Q Consensus 476 Yv~VkFD~ 483 (677)
|..|+||+
T Consensus 1920 yq~V~~D~ 1927 (2039)
T PRK15319 1920 WQNYSADS 1927 (2039)
T ss_pred EEEecccc
Confidence 44455543
No 16
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=57.65 E-value=1.3e+02 Score=32.72 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=4.8
Q ss_pred ccCCCCCCC
Q 005794 170 EVSRHDPGH 178 (677)
Q Consensus 170 ~~~~~~~~~ 178 (677)
|+++=++|.
T Consensus 131 da~~L~yG~ 139 (297)
T PF07174_consen 131 DASHLDYGS 139 (297)
T ss_pred ccceeecce
Confidence 455555663
No 17
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.23 E-value=4.3e+02 Score=33.17 Aligned_cols=23 Identities=13% Similarity=0.442 Sum_probs=11.7
Q ss_pred CcccccccccccCCCCCCCCCcee
Q 005794 278 PTTFLCKLKFRNELPEPSAQPKLM 301 (677)
Q Consensus 278 ~~~fi~~iry~N~LP~pP~~PKLL 301 (677)
.-||++..-|.-.= ++|.++-|+
T Consensus 399 t~dfvatk~Y~~~~-k~p~ppafv 421 (1007)
T KOG1984|consen 399 TVDFVATKDYCRKT-KPPKPPAFV 421 (1007)
T ss_pred ccceeeehhhhhcC-CCCCCceEE
Confidence 45666665554332 445555553
No 18
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=48.54 E-value=13 Score=46.55 Aligned_cols=17 Identities=41% Similarity=0.810 Sum_probs=9.6
Q ss_pred cccccCCCCCCCCCceee
Q 005794 285 LKFRNELPEPSAQPKLMA 302 (677)
Q Consensus 285 iry~N~LP~pP~~PKLL~ 302 (677)
|.|.|+.|.. .+|-|+.
T Consensus 149 itfvne~prv-iep~~~a 165 (2365)
T COG5178 149 ITFVNEVPRV-IEPQLFA 165 (2365)
T ss_pred EEEeecCccc-cCcceee
Confidence 6777777654 3444443
No 19
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=45.80 E-value=1.3e+02 Score=36.95 Aligned_cols=23 Identities=43% Similarity=1.024 Sum_probs=13.4
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCC
Q 005794 63 HQPYSYAQPPPPPPPESSYPPPP 85 (677)
Q Consensus 63 ~~~~~~~~~~~~~p~~~~~~~pp 85 (677)
|+++.|.|.+|+|+.-+.+.+.+
T Consensus 611 ~ppPgf~PnpPpP~~~Pg~np~~ 633 (894)
T KOG0132|consen 611 HPPPGFVPNPPPPPLRPGYNPYP 633 (894)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Confidence 66777777555555555555333
No 20
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=44.41 E-value=1e+02 Score=35.99 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=8.3
Q ss_pred CCChhhhhhcCCCCCCCC
Q 005794 30 PPPQQQQQQQRPNPYSQN 47 (677)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~ 47 (677)
+..++.++.+.+.++++.
T Consensus 466 Pg~~s~~~s~~P~q~s~~ 483 (554)
T KOG0119|consen 466 PGMQSAQSSSLPQQASTT 483 (554)
T ss_pred CCccccccccCCcccccc
Confidence 334444444455555433
No 21
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=41.60 E-value=21 Score=45.05 Aligned_cols=9 Identities=11% Similarity=0.472 Sum_probs=4.2
Q ss_pred eeeeeecee
Q 005794 551 WVREYHWDV 559 (677)
Q Consensus 551 ~vReYd~~v 559 (677)
.+|+|-++.
T Consensus 480 LLknyv~N~ 488 (2365)
T COG5178 480 LLKNYVRNM 488 (2365)
T ss_pred HHHHHHHhh
Confidence 345554444
No 22
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=40.82 E-value=45 Score=44.17 Aligned_cols=13 Identities=0% Similarity=-0.146 Sum_probs=8.6
Q ss_pred cccCceEEEEEcC
Q 005794 471 RYDDQFVAATFDG 483 (677)
Q Consensus 471 ~w~n~Yv~VkFD~ 483 (677)
.|-..+++|.+..
T Consensus 1910 w~LEPQAQLiyq~ 1922 (2039)
T PRK15319 1910 VSLTPQAQVVWQN 1922 (2039)
T ss_pred EEEEEEEEEEEEE
Confidence 3556778887754
No 23
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=37.39 E-value=66 Score=37.55 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=21.2
Q ss_pred CCCCChhhhhccCCCCccCcccccCCcccCCCCCCCccCcccccccccc
Q 005794 350 RPPLDPEDEELLRDDEVVTPVKKDGIKRKERPTDKGVSWLVKTQYISPL 398 (677)
Q Consensus 350 ~~~LdPeD~aLLrD~e~~~p~~s~Gi~kksR~~~~~VSWLRRTEYISs~ 398 (677)
-.+|-+...+||.=-.. .++. .| --.|+-+-.|=+++
T Consensus 414 EipLG~AEQfLLtLSsI------~~L~--aR----L~LWaFklDY~~~E 450 (817)
T KOG1925|consen 414 EIPLGPAEQFLLTLSSI------GGLA--AR----LQLWAFKLDYDSME 450 (817)
T ss_pred CCCCCcHHHHHHHHhhh------HHHH--HH----HHHHhhhcccchhh
Confidence 34788888888862100 0111 12 24788888887754
No 24
>PHA03378 EBNA-3B; Provisional
Probab=37.08 E-value=6.6e+02 Score=30.91 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCCC
Q 005794 40 RPNPYSQNWGGYS 52 (677)
Q Consensus 40 ~~~~~~~~~~~~~ 52 (677)
-..+|--+|...+
T Consensus 658 e~t~y~~~w~~~~ 670 (991)
T PHA03378 658 EITPYKPTWTQIG 670 (991)
T ss_pred cccccCCcccccC
Confidence 5567778998755
No 25
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.38 E-value=3e+02 Score=34.16 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=24.8
Q ss_pred CcccccccccccCCCCCCCCCceeeccCC
Q 005794 278 PTTFLCKLKFRNELPEPSAQPKLMALKKD 306 (677)
Q Consensus 278 ~~~fi~~iry~N~LP~pP~~PKLL~~p~d 306 (677)
.-|||+...|.=.-|.|++-.=++++...
T Consensus 278 ~vE~iAP~eYmlR~P~Pavy~FliDVS~~ 306 (887)
T KOG1985|consen 278 VVEFIAPSEYMLRPPQPAVYVFLIDVSIS 306 (887)
T ss_pred eEEEecCcccccCCCCCceEEEEEEeehH
Confidence 45899999999999999998888888774
No 26
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=35.89 E-value=2.5e+02 Score=31.66 Aligned_cols=30 Identities=40% Similarity=0.572 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccCC
Q 005794 76 PPESSYPPPPPPPPPPPPTQQQTQPSMYYSS 106 (677)
Q Consensus 76 p~~~~~~~pppppp~p~~~~~~~~~~~~~~~ 106 (677)
|+|.++..-.||. +|.+++++.++-|-.++
T Consensus 262 PpP~~t~~G~pP~-pp~~~qq~p~pp~~~pp 291 (498)
T KOG4849|consen 262 PPPQQTMLGNPPL-PPQQIQQQPQPPMGQPP 291 (498)
T ss_pred CCCccccCCCCCC-CchhhccCCCCCCCCCC
Confidence 3333444333333 33334455555454444
No 27
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.72 E-value=4.7e+02 Score=29.47 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=4.8
Q ss_pred ccHHHHHHHH
Q 005794 202 ETEEERRIRK 211 (677)
Q Consensus 202 e~~ee~~~r~ 211 (677)
+.++|+..++
T Consensus 213 sa~~eklR~r 222 (365)
T KOG2391|consen 213 SAVREKLRRR 222 (365)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 28
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=31.38 E-value=1.2e+03 Score=29.73 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=15.4
Q ss_pred CCcccccccccccC-------CCCCCCCCceeeccC
Q 005794 277 KPTTFLCKLKFRNE-------LPEPSAQPKLMALKK 305 (677)
Q Consensus 277 r~~~fi~~iry~N~-------LP~pP~~PKLL~~p~ 305 (677)
..++|.....|+.. +|--+.|| ||.|..
T Consensus 674 tLSEYARPHvmSP~nr~hPf~vpl~p~DP-lL~Y~~ 708 (982)
T PF03154_consen 674 TLSEYARPHVMSPTNRNHPFYVPLGPMDP-LLAYHM 708 (982)
T ss_pred HHHHhhcccccCCCCCCCcccCCCCCCCH-HHHhhh
Confidence 44556555555544 34455666 666654
No 29
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.72 E-value=1.1e+03 Score=30.25 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=7.1
Q ss_pred CCChhhhhhcCCCCCC
Q 005794 30 PPPQQQQQQQRPNPYS 45 (677)
Q Consensus 30 ~~~~~~~~~~~~~~~~ 45 (677)
++.+++|+.+..++++
T Consensus 741 ~~~~~~~~~P~~~~~p 756 (1049)
T KOG0307|consen 741 PGNQPPMAPPYPNPQP 756 (1049)
T ss_pred CCCCCCcCCCCcCCCC
Confidence 3444444444444444
No 30
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.19 E-value=1.2e+02 Score=33.09 Aligned_cols=18 Identities=6% Similarity=0.252 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 005794 217 KHRQEEKHRLQMKESQNV 234 (677)
Q Consensus 217 k~~~~ek~~q~~k~~q~~ 234 (677)
++++-++|+|+++|++.+
T Consensus 72 rqeEL~Rke~ELdRREr~ 89 (313)
T KOG3088|consen 72 KQEELRRKEQELDRRERA 89 (313)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 455566667777777663
No 31
>PRK09752 adhesin; Provisional
Probab=26.18 E-value=70 Score=40.81 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=2.8
Q ss_pred CcccCC
Q 005794 101 SMYYSS 106 (677)
Q Consensus 101 ~~~~~~ 106 (677)
.+||=-
T Consensus 909 ~nWYLr 914 (1250)
T PRK09752 909 NDWYLR 914 (1250)
T ss_pred CCceee
Confidence 455533
No 32
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=20.26 E-value=82 Score=36.41 Aligned_cols=9 Identities=11% Similarity=0.187 Sum_probs=4.2
Q ss_pred cccccccCC
Q 005794 283 CKLKFRNEL 291 (677)
Q Consensus 283 ~~iry~N~L 291 (677)
.-|.|.|.+
T Consensus 126 GlIAY~~~~ 134 (465)
T PF01690_consen 126 GLIAYDNSS 134 (465)
T ss_pred eeEEecCcc
Confidence 344455543
No 33
>PRK15313 autotransport protein MisL; Provisional
Probab=20.01 E-value=2.4e+02 Score=35.44 Aligned_cols=12 Identities=0% Similarity=-0.100 Sum_probs=6.3
Q ss_pred cccCceEEEEEc
Q 005794 471 RYDDQFVAATFD 482 (677)
Q Consensus 471 ~w~n~Yv~VkFD 482 (677)
.|-..++||.+.
T Consensus 822 w~LEPQAQLiwq 833 (955)
T PRK15313 822 YWLQPKAQVVWM 833 (955)
T ss_pred EEEeeEEEEEEE
Confidence 445555555543
Done!