Query 005794
Match_columns 677
No_of_seqs 207 out of 252
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 07:34:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 36.1 7.6 0.00026 36.2 0.0 8 99-106 83-90 (138)
2 3pq1_A Poly(A) RNA polymerase; 19.5 31 0.0011 38.1 1.0 40 188-230 15-54 (464)
3 1nxk_A MAP kinase-activated pr 10.1 69 0.0024 33.3 0.5 42 110-151 3-44 (400)
4 1o7d_D Lysosomal alpha-mannosi 9.9 2.8E+02 0.0096 28.5 5.0 86 554-649 109-209 (282)
5 2xzz_A Protein-glutamine gamma 8.2 1.3E+02 0.0046 26.2 1.5 31 270-300 11-41 (102)
6 1yx4_A 26S proteasome non-ATPa 7.4 3.8E+02 0.013 24.9 4.2 55 177-234 2-65 (132)
7 1y66_A Engrailed homeodomain; 7.3 3.9E+02 0.013 20.4 3.4 38 206-245 6-43 (52)
8 3gna_A RAG-1, V(D)J recombinat 6.6 3.9E+02 0.013 22.9 3.5 52 177-228 2-54 (96)
9 1jvr_A HTLV-II MA, MA, human T 6.0 7.6E+02 0.026 22.6 5.2 41 126-166 93-133 (137)
10 3urg_A ALR1010 protein, CCBP; 5.8 2.6E+02 0.0089 26.4 2.1 36 177-214 2-37 (146)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=36.06 E-value=7.6 Score=36.22 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=4.2
Q ss_pred CCCcccCC
Q 005794 99 QPSMYYSS 106 (677)
Q Consensus 99 ~~~~~~~~ 106 (677)
....|++.
T Consensus 83 ~G~~YFic 90 (138)
T 1jer_A 83 LGMHYFVC 90 (138)
T ss_dssp SEEEEEEC
T ss_pred CcCEEEEc
Confidence 34456655
No 2
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=19.47 E-value=31 Score=38.12 Aligned_cols=40 Identities=30% Similarity=0.346 Sum_probs=8.7
Q ss_pred CCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005794 188 PPGVKKVNGGSGRVETEEERRIRKKREYEKHRQEEKHRLQMKE 230 (677)
Q Consensus 188 ~~~~~~~~~~~g~~e~~ee~~~r~~r~~~k~~~~ek~~q~~k~ 230 (677)
-+....+.|..|-+|+..|..-+++. |.+.-.++++|.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~r~~qa~r 54 (464)
T 3pq1_A 15 VPRGSHMEQPSGSVETGFEDKIPKRR---FSEMQNERREQAQR 54 (464)
T ss_dssp -------------------------C---CHHHHHHHHHHHHT
T ss_pred cCCcccccCCccccccCcccCCCCCC---HHHHHHHHHHHhcc
Confidence 34457778888889998888888887 66666666654433
No 3
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=10.08 E-value=69 Score=33.34 Aligned_cols=42 Identities=31% Similarity=0.618 Sum_probs=0.0
Q ss_pred CcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005794 110 NQNSMYPPMQPPLPPPPPSSPPPSSSIPPPPPPGSPPPPPPK 151 (677)
Q Consensus 110 ~~~~~~~~~~~~~ppppp~~pp~~~~~pppppP~~pppppp~ 151 (677)
+..+..+++.+++++.++++++.+..++++++++.++++..+
T Consensus 3 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (400)
T 1nxk_A 3 SNSQGQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFP 44 (400)
T ss_dssp ---------------------------------------CCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcccc
No 4
>1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: b.30.5.6
Probab=9.92 E-value=2.8e+02 Score=28.54 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=0.0
Q ss_pred eeecee--ccCCCCCCceEEEEEc----CCceEEecCCCcceecccccc---------cCCCCcccccCCCCceEEEeec
Q 005794 554 EYHWDV--RGDDADDPTTYLVSFD----DDEARYVPLPTKLNLRKKRAI---------EGRSNDEVEHFPIPSSIAVRRR 618 (677)
Q Consensus 554 eYd~~v--~~~~~~~~~e~~l~Fd----dg~AyY~PL~tRi~LRKrRaK---------~~~~~dei~~f~~ps~Itv~~r 618 (677)
|++|.| .....+...|+++.|. .+++||....++=-++|+|-+ ..-++ +=|+..+.|.+++.
T Consensus 109 E~e~~Vgpipi~d~~~kEiv~r~~T~i~s~~~FYTDsNG~e~~kR~~~~r~~~~~~~~~pv~g---NYYPv~s~~~IqD~ 185 (282)
T 1o7d_D 109 ELEWTVGPIPVGDGWGKEVISRFDTALATRGLFYTDSNGREILERRRNYRPTWKLNQTEPVAG---NYYPVNSRIYITDG 185 (282)
T ss_dssp EEEEEECCCCCTTSCCEEEEEEEECCCCCTTEEEEESTTSSEEEEETTCCSSSCCCCSCTTGG---GCEEESSEEEEECS
T ss_pred EEEEEEccccccCCCCcEEEEEEEeeeccCCeEEECCCCceeeEEEeccccccccccccCccc---ceeeeeeEEEEEcC
Q ss_pred cchHHHHHhhhcccccCCCCCCCCcCCCCCc
Q 005794 619 ANVTAIELKEQGAYSNSKGNSSSSKMGRVDS 649 (677)
Q Consensus 619 ~~~~e~e~~e~~~~~~~~~~~~~~~~~~~~~ 649 (677)
. +...+++..--..++.++|..|+
T Consensus 186 ~-------~rltvl~drs~G~sSl~~G~lEl 209 (282)
T 1o7d_D 186 N-------MQLTVLTDRSQGGSSLRDGSLEL 209 (282)
T ss_dssp S-------EEEEEEESSCEEECCSSTTEEEE
T ss_pred C-------eEEEEEecccccccccCCCeEEE
No 5
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=8.22 E-value=1.3e+02 Score=26.23 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred ccccccCCCcccccccccccCCCCCCCCCce
Q 005794 270 RTENRLKKPTTFLCKLKFRNELPEPSAQPKL 300 (677)
Q Consensus 270 r~~~~~~r~~~fi~~iry~N~LP~pP~~PKL 300 (677)
++....+-..++-+.+.|+|.||.+.-+|.|
T Consensus 11 ~v~g~~~v~~~l~v~vsf~NPL~~~L~~c~~ 41 (102)
T 2xzz_A 11 TLLGAAVVGQECEVQIVFKNPLPVTLTNVVF 41 (102)
T ss_dssp EESSCCCSSSCEEEEEEEECCSSSCBCSEEE
T ss_pred EECCCcccCCeEEEEEEEECCCCCcccCEEE
No 6
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=7.38 E-value=3.8e+02 Score=24.88 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCC--------c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005794 177 GHSKQHRPPVPPPGVKKVNGGSGR--------V-ETEEERRIRKKREYEKHRQEEKHRLQMKESQNV 234 (677)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~g~--------~-e~~ee~~~r~~r~~~k~~~~ek~~q~~k~~q~~ 234 (677)
||+|+||+++..-..--..+..|. | ...|=+..=-|| ..-++|+.||+...++..
T Consensus 2 ~~~~~~~~~~~~~~~~eG~g~~~~~~~~fefgvDp~~DPeLa~ALr---~Smeee~~Rqe~~~~~~~ 65 (132)
T 1yx4_A 2 GHHHHHHHHHHSSGHIEGRHMLGLGASDFEFGVDPSADPELALALR---VSMEEQRQRQEEEARRAA 65 (132)
T ss_dssp -------------------CCSCCCSSSCCSCSCGGGCHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred CccccccccccccCCCCCccccccCccccccCCCCCcCHHHHHHHH---HhHHHHHHHHHHHHHhhc
No 7
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=7.25 E-value=3.9e+02 Score=20.41 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhccC
Q 005794 206 ERRIRKKREYEKHRQEEKHRLQMKESQNVVMQKSQMVASG 245 (677)
Q Consensus 206 e~~~r~~r~~~k~~~~ek~~q~~k~~q~~~~~~~q~~~~~ 245 (677)
|+++|+++++...-++-++.-.-.-.|+ |--.|+.+-|
T Consensus 6 eeverklkefvrrhqeitqetlheyaqk--lglnqqaieq 43 (52)
T 1y66_A 6 EEVERKLKEFVRRHQEITQETLHEYAQK--LGLNQQAIEQ 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccHHHHHH
No 8
>3gna_A RAG-1, V(D)J recombination-activating protein 1; DNA recombination, DNA-binding, endonucle hydrolase; 2.40A {Mus musculus} PDB: 3gnb_A
Probab=6.57 E-value=3.9e+02 Score=22.95 Aligned_cols=52 Identities=23% Similarity=0.127 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005794 177 GHSKQHRPPVPPPGVKKVNGGSGRV-ETEEERRIRKKREYEKHRQEEKHRLQM 228 (677)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~g~~-e~~ee~~~r~~r~~~k~~~~ek~~q~~ 228 (677)
|.+|+|+++..-.++...++-..+- -+-=+++.+|-|..+.+.|-+.++..+
T Consensus 2 gsshhhhhhssglv~~~nkggrprqhllsltrraqkhrlrelk~qvk~FadkE 54 (96)
T 3gna_A 2 GSSHHHHHHSSGLVPGSHMGGRPRQHLLSLTRRAQKHRLRELKIQVKEFADKE 54 (96)
T ss_dssp -------------------CCCCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccCceeeeecCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
No 9
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=5.97 E-value=7.6e+02 Score=22.64 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 005794 126 PPSSPPPSSSIPPPPPPGSPPPPPPKDVEGRDTGTSDRDKR 166 (677)
Q Consensus 126 pp~~pp~~~~~pppppP~~pppppp~~~~~~~~~~~~~~~~ 166 (677)
..+++|+.+...|+.|+...|++.|+....-.+.+..++..
T Consensus 93 ~~~~~p~ap~~~p~~p~~~~p~~aP~~~~~~~PPPY~ep~a 133 (137)
T 1jvr_A 93 VSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTT 133 (137)
T ss_dssp CCCCCSCSSSSSCSSCCCCSCCCCCSSSCCSCCCCCCCSSC
T ss_pred CCCCCccccccCCCCCcccCCCCCCCcccccCCCCCCCccc
No 10
>3urg_A ALR1010 protein, CCBP; calcium binding protein, metal binding protein; HET: MNB; 2.00A {Nostoc} PDB: 2k2v_A 2p0p_A 2p0q_A
Probab=5.76 E-value=2.6e+02 Score=26.40 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCcccHHHHHHHHHHH
Q 005794 177 GHSKQHRPPVPPPGVKKVNGGSGRVETEEERRIRKKRE 214 (677)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~g~~e~~ee~~~r~~r~ 214 (677)
|.+||||++. .+.-....+-.++++||||+.|=..+
T Consensus 2 ~~~~~~~~~~--~~~~~~~~~Ma~~~~DeeRE~RI~~E 37 (146)
T 3urg_A 2 GSSHHHHHHS--SGLVPRGSHMASVERDETREHRIETE 37 (146)
T ss_dssp ---------------------CCSSCCCHHHHHHHHHH
T ss_pred Cccccccccc--cCcccCcccCCCCCcchhhhheeeeE
Done!