Query 005795
Match_columns 677
No_of_seqs 260 out of 764
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 07:36:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 1E-121 4E-126 1019.7 44.6 499 1-501 5-510 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 1E-116 4E-121 982.8 46.8 480 13-497 4-530 (530)
3 4fh3_A Poly(A) RNA polymerase 100.0 3.6E-50 1.2E-54 424.8 26.0 277 37-361 15-348 (349)
4 2ikf_A RNA uridylyl transferas 100.0 1.2E-50 4.2E-55 431.9 19.4 284 14-346 10-349 (353)
5 4e8f_A Poly(A) RNA polymerase 100.0 1.5E-48 5.2E-53 423.4 27.5 305 14-368 24-383 (405)
6 3nyb_A Poly(A) RNA polymerase 100.0 5E-48 1.7E-52 407.9 23.3 267 33-348 20-299 (323)
7 2b4v_A RNA editing complex pro 100.0 1.8E-39 6.1E-44 357.8 21.5 304 26-349 11-441 (468)
8 3hj4_A Minor editosome-associa 100.0 4.6E-37 1.6E-41 330.2 20.9 280 32-361 5-379 (384)
9 3pq1_A Poly(A) RNA polymerase; 100.0 7E-36 2.4E-40 328.2 26.6 248 35-361 135-459 (464)
10 1r89_A TRNA nucleotidyltransfe 99.4 8.9E-11 3E-15 128.5 24.9 297 37-412 6-318 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.1 1.3E-08 4.4E-13 108.0 23.8 272 36-338 9-323 (349)
12 4at7_A Interleukin enhancer-bi 97.9 0.0019 6.4E-08 69.2 24.4 224 27-275 20-251 (364)
13 4at7_B NF90, interleukin enhan 97.3 0.016 5.5E-07 62.5 20.1 260 46-345 22-327 (383)
14 1no5_A Hypothetical protein HI 97.3 0.00096 3.3E-08 59.8 9.0 44 91-136 28-71 (114)
15 2rff_A Putative nucleotidyltra 97.0 0.0016 5.4E-08 58.6 8.1 53 55-119 10-62 (111)
16 1wot_A Putative minimal nucleo 97.0 0.0012 3.9E-08 57.8 6.6 48 59-119 7-54 (98)
17 1ylq_A Putative nucleotidyltra 96.8 0.003 1E-07 55.0 7.6 28 91-118 18-46 (96)
18 4ebj_A Aminoglycoside nucleoti 94.9 0.025 8.5E-07 58.1 5.3 54 53-118 15-68 (272)
19 1kny_A Kntase, kanamycin nucle 94.5 0.04 1.4E-06 55.8 5.7 29 91-119 32-60 (253)
20 2fmp_A DNA polymerase beta; nu 93.6 0.47 1.6E-05 50.2 12.1 117 89-240 171-298 (335)
21 2bcq_A DNA polymerase lambda; 92.2 0.59 2E-05 49.5 10.4 116 89-240 168-292 (335)
22 3jz0_A Lincosamide nucleotidyl 90.3 0.66 2.3E-05 48.3 8.3 105 45-172 12-117 (287)
23 1jaj_A DNA polymerase beta-lik 88.2 0.68 2.3E-05 44.9 6.1 114 83-240 24-142 (174)
24 2ihm_A POL MU, DNA polymerase 87.0 2.4 8.2E-05 45.3 10.0 51 89-141 175-225 (360)
25 1jms_A Terminal deoxynucleotid 83.1 7.3 0.00025 41.9 11.6 52 89-141 195-247 (381)
26 3b0x_A DNA polymerase beta fam 81.2 4.9 0.00017 45.2 9.8 107 90-241 180-286 (575)
27 1v4a_A Glutamate-ammonia-ligas 73.7 6.2 0.00021 43.1 7.6 48 89-136 153-208 (440)
28 3k7d_A Glutamate-ammonia-ligas 62.4 18 0.00061 40.3 8.4 61 76-136 218-289 (498)
29 2fcl_A Hypothetical protein TM 59.6 31 0.0011 32.8 8.5 71 89-168 32-107 (169)
30 2pbe_A AAD6, aminoglycoside 6- 51.8 19 0.00067 37.1 6.1 78 91-173 24-112 (294)
31 2w9m_A Polymerase X; SAXS, DNA 50.2 23 0.00077 39.9 6.7 94 93-241 182-276 (578)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=1.3e-121 Score=1019.74 Aligned_cols=499 Identities=41% Similarity=0.749 Sum_probs=451.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 005795 1 MSSSERMSSPPPPKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRG 80 (677)
Q Consensus 1 ~~~~~~~~~~~~~~~~Gvt~Pis~~~Pt~~d~~~t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g 80 (677)
|++..+.++++++++||||+|||+++||++|++.|.+|+++|++++++||+||.++|++|+++|+++|++|++++++++|
T Consensus 5 ~~~~~~~~~~~~~~~~g~~~pis~~~p~~~d~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~ 84 (514)
T 1q79_A 5 VTTQGSQQTQPPQKHYGITSPISLAAPKETDALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKN 84 (514)
T ss_dssp --------------CCSSSCCSCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccccCCcccccCCCCCCcCCCCCHHHHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33333334445689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCeEEEEeccccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecC
Q 005795 81 YSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDG 160 (677)
Q Consensus 81 ~~~~~~~~~~~~I~~FGSy~lGv~~p~SDIDil~v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~G 160 (677)
++++++.+++++|++||||++|+|+|+||||++|++|.+++++ +||..++++|++.++++++++|++|+||||||++.|
T Consensus 85 ~~~~~~~~~~~~v~~FGS~~lG~~~p~SDID~~~v~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~g 163 (514)
T 1q79_A 85 LPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDG 163 (514)
T ss_dssp CCHHHHTTCBCEEEEEHHHHHTCCCTTCCEEEEEEECTTSCHH-HHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETT
T ss_pred CchhhcccCCceEEEeeeeccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCccCceEEEecCCcccEEEEEECC
Confidence 9999999999999999999999999999999999999999985 999999999999999999999999999999999999
Q ss_pred ceeeEeeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCC
Q 005795 161 LSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGF 240 (677)
Q Consensus 161 I~iDLsfa~l~~~~~p~~l~l~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~ 240 (677)
|+|||+||+++...+|+++++.|+++|++||++|++||||+|++++|++++|+.++||.++|+||+|||+||||++++||
T Consensus 164 i~vDL~f~~~~~~~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~ 243 (514)
T 1q79_A 164 IEIDILFARLALQTIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGF 243 (514)
T ss_dssp EEEEEEEEECSCSSBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTS
T ss_pred eeEEEEEecCCcccCcccccCCchhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCCCceeecccccccCCcccccCCCCCCCCCCceEEeCCCCCCC
Q 005795 241 LGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCM 320 (677)
Q Consensus 241 LGG~swaLLVa~vcQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~l~~i~~g~l~~~~W~p~~~~~dr~~~MpIitP~~P~~ 320 (677)
||||+|+||||++||+||++++++||.+||++|++|+|++||++++++++.+++++|+|+.+++|+.|+|||+||++|++
T Consensus 244 lgg~s~~lLVa~~~Ql~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~ 323 (514)
T 1q79_A 244 LGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 323 (514)
T ss_dssp BCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCC
T ss_pred ccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCC
Confidence 99999999999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred CccCccCHhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccchhhhcccEEEEEEEeCChhhhhhhhhHHHHHHHHHHH
Q 005795 321 NSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTL 400 (677)
Q Consensus 321 Nsa~nVs~stl~vI~~Ef~RA~~il~~i~~~~~~W~~Lfep~~Ff~~Yk~yl~I~v~a~~~e~~~~w~GwVESRlR~Lv~ 400 (677)
|+|+||+.+|+++|++||+||+++|+++..++.+|++||+|++||.+|+|||+|+|++.+++++.+|.||||||||.|+.
T Consensus 324 N~~~nVs~st~~~I~~Ef~rA~~il~~i~~~~~~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~ 403 (514)
T 1q79_A 324 NSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVG 403 (514)
T ss_dssp BTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHH
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCceeeccCCCCCCCCCC----CCceeEEEEeeeeCC---CCccCCCceecchHHHHHHHHHHhhccccCCceE
Q 005795 401 MIERDTYGKLQCHPYPHEYVDTSK----PCAHCAFFMGLQRKP---GEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGME 473 (677)
Q Consensus 401 ~lE~~~~~~l~ahp~P~~f~~~~~----~~~~~~ffIGL~~~~---~~~~~~~~~~dl~~~v~eF~~~i~~~~~~~~~m~ 473 (677)
+||+. +++..|||||++|.+... ..|.++|||||.++. ....+.+.++||+.++++|++.+++|..|+++|+
T Consensus 404 ~le~~-~~i~~a~~~P~~f~~~~~~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~ 482 (514)
T 1q79_A 404 SLEKN-EFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMK 482 (514)
T ss_dssp HHHTS-TTEEEEEECSCCEECCCSCTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCE
T ss_pred HhccC-CCceeeecCccccCCccccccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcE
Confidence 99985 344559999999987543 357889999999865 2222345679999999999999999999999999
Q ss_pred EEEEeeccCCCCCCcCCCCccccCCCcc
Q 005795 474 ICVSHIRRKQIPPYVFPEGYKRTRHPRL 501 (677)
Q Consensus 474 i~v~~vkr~~LP~~v~~~g~~~~~~~~~ 501 (677)
|+|+|||+++||++||++|++|+|+.+.
T Consensus 483 i~v~~vk~~~Lp~~v~~~~~~~~~~~~~ 510 (514)
T 1q79_A 483 IAAMHVKRKQLHQLLPSHVLQKKKKHST 510 (514)
T ss_dssp EEEEEEEHHHHGGGCC------------
T ss_pred EEEEEechHHCchhhcchhccCCCCCCc
Confidence 9999999999999999999988887643
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=1.2e-116 Score=982.85 Aligned_cols=480 Identities=39% Similarity=0.718 Sum_probs=455.3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeE
Q 005795 13 PKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANAL 92 (677)
Q Consensus 13 ~~~~Gvt~Pis~~~Pt~~d~~~t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~ 92 (677)
+++||||+|||+++||++|++.+.+|+++|++++++||+||.++|++|+++|+++|++|++++++++|++++++.+++++
T Consensus 4 ~~~~g~t~pis~~~p~~~d~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~ 83 (530)
T 2hhp_A 4 QKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGK 83 (530)
T ss_dssp CGGGCSSCCSCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCE
T ss_pred cccCccCCCCcCCCCChHHhhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCce
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecCceeeEeeeeccc
Q 005795 93 IFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISR 172 (677)
Q Consensus 93 I~~FGSy~lGv~~p~SDIDil~v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~ 172 (677)
|++||||++|+|+|+||||++|++|.+++++ +||..++++|++.++++++++|++|+||||||+++||+|||+|++++.
T Consensus 84 V~~FGSy~lG~~~p~SDID~~v~~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~ 162 (530)
T 2hhp_A 84 IFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQ 162 (530)
T ss_dssp EEEEHHHHHTCCCTTCCEEEEEEECTTCCHH-HHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSS
T ss_pred EEEecccccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCCCCceEEEecCCcccEEEEEECCEeeEEEEecccc
Confidence 9999999999999999999999999999985 999999999999899999999999999999999999999999999988
Q ss_pred cccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH
Q 005795 173 LVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVAR 252 (677)
Q Consensus 173 ~~~p~~l~l~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~ 252 (677)
..+|+++++.++++|++||++|++||||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+||||+
T Consensus 163 ~~ip~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~ 242 (530)
T 2hhp_A 163 PQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVAR 242 (530)
T ss_dssp SCBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHH
T ss_pred ccCCcccCCCchhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHHhhcCCCCCceeecccccccCCcccccCCCCCCCCCCceEEeCCCCCCCCccCccCHhHHH
Q 005795 253 VCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLR 332 (677)
Q Consensus 253 vcQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~l~~i~~g~l~~~~W~p~~~~~dr~~~MpIitP~~P~~Nsa~nVs~stl~ 332 (677)
+||+||++++++||.+||++|++|||++||++++++++.+++++|+|+.|++|+.|+|||+||++|++|+|+||+.+|++
T Consensus 243 ~lQl~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~ 322 (530)
T 2hhp_A 243 ICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKK 322 (530)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHH
Confidence 99999999999999999999999999999999998888888999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccccccccchhhhcccEEEEEEEeC-ChhhhhhhhhHHHHHHHHHHHHhhhcccCcee
Q 005795 333 VMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAA-NADDLLAWKGWVESRLRQLTLMIERDTYGKLQ 411 (677)
Q Consensus 333 vI~~Ef~RA~~il~~i~~~~~~W~~Lfep~~Ff~~Yk~yl~I~v~a~-~~e~~~~w~GwVESRlR~Lv~~lE~~~~~~l~ 411 (677)
+|++||+||+++|+++..++.+|.+||+|++||.+|+|||+|+++++ +++++..|.||||||+|.|+.+||+ .+++..
T Consensus 323 ~I~~Ef~rA~~ll~~i~~~~~~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~-~~~i~~ 401 (530)
T 2hhp_A 323 VILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV-LAGIKI 401 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHT-STTEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhc-ccCcee
Confidence 99999999999999999888999999999999999999999999998 9999999999999999999999998 567778
Q ss_pred eccCCCCCCCCC-------------------------------------------CCCceeEEEEeeeeCCCCccCCCce
Q 005795 412 CHPYPHEYVDTS-------------------------------------------KPCAHCAFFMGLQRKPGEVVQEGQQ 448 (677)
Q Consensus 412 ahp~P~~f~~~~-------------------------------------------~~~~~~~ffIGL~~~~~~~~~~~~~ 448 (677)
|||||++|.+.. ...+.++|||||.++.. +.+++
T Consensus 402 a~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~---~~~~~ 478 (530)
T 2hhp_A 402 AHPFTKPFESSYCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKKEK 478 (530)
T ss_dssp EEECSSCEEEEEECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC-------CCC
T ss_pred eecCCcccCccccccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCC---CCCce
Confidence 999999984310 12356899999998753 23568
Q ss_pred ecchHHHHHHHHHHhhccc-cCCc-eE-EEEEeeccCCCCCCcCCCCccccC
Q 005795 449 FDIRGSVEEFKLSINMYMF-WKPG-ME-ICVSHIRRKQIPPYVFPEGYKRTR 497 (677)
Q Consensus 449 ~dl~~~v~eF~~~i~~~~~-~~~~-m~-i~v~~vkr~~LP~~v~~~g~~~~~ 497 (677)
+||+.++++|++.|++|.. |+++ |+ |.|+|||+++||++||++|++|++
T Consensus 479 ~di~~~~~~F~~~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~~~~ 530 (530)
T 2hhp_A 479 VDIHIPCTEFVNLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKRPS 530 (530)
T ss_dssp CCCHHHHHHHHHHHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSCCCC
T ss_pred EeChhHHHHHHHHHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCcCCC
Confidence 9999999999999999997 8876 89 999999999999999999998753
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=3.6e-50 Score=424.77 Aligned_cols=277 Identities=20% Similarity=0.242 Sum_probs=225.6
Q ss_pred HHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeEEe
Q 005795 37 ELEKFLVE--AGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALC 114 (677)
Q Consensus 37 ~L~~~L~~--~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDIDil~ 114 (677)
+|.+++.+ ..+.||++|.++|++++++|+++++++. .+++|++||||++|+++|+||||++|
T Consensus 15 el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~----------------p~~~v~~fGS~~~g~~~~~SDiDl~v 78 (349)
T 4fh3_A 15 EFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRIS----------------PDAELVAFGSLESGLALKNSDMDLCV 78 (349)
T ss_dssp HHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCEEEEESHHHHTCCBSSCCEEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEEeeccCCCCCCCCCEEEEE
Confidence 45555433 1356999999999999999999998531 36899999999999999999999999
Q ss_pred ecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEe-------cCceeeEeeeecccccccccccccccccc
Q 005795 115 VGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF-------DGLSIDLLYASISRLVVREDLDISDMSVL 187 (677)
Q Consensus 115 v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~-------~GI~iDLsfa~l~~~~~p~~l~l~~d~~L 187 (677)
+.|.....+ .++..+...+.+ ...+++.|.+|+||||||.+ .|+.||++|++
T Consensus 79 ~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~------------------ 137 (349)
T 4fh3_A 79 LMDSRVQSD-TIALQFYEELIA--EGFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNN------------------ 137 (349)
T ss_dssp ECCTTSCHH-HHHHHHHHHHHH--TTEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESC------------------
T ss_pred ecCCCCChH-HHHHHHHHHHHh--hcccceEeeeeeeeeEEEEecccccccccceeecCcCc------------------
Confidence 999887764 666666555543 34678889999999999997 37899998876
Q ss_pred CCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHhh------CCC--
Q 005795 188 NDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQL------YPN-- 259 (677)
Q Consensus 188 ~~lDe~svrSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQl------~Pn-- 259 (677)
.+|++++++|.++++.+++||+++++||+|||+||||+++.|+||||+|+|||++|||. +|+
T Consensus 138 ----------~~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~ 207 (349)
T 4fh3_A 138 ----------RLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLL 207 (349)
T ss_dssp ----------HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSS
T ss_pred ----------chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhh
Confidence 57999999999999999999999999999999999999999999999999999999995 232
Q ss_pred ------------------------------CCHHHHHHHHHHHhh-cCCCCCceeecccccccCC--cccc-------cC
Q 005795 260 ------------------------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAIDEAELG--FSVW-------DP 299 (677)
Q Consensus 260 ------------------------------~s~~~LL~~FF~~Ys-~wdW~~pV~l~~i~~g~l~--~~~W-------~p 299 (677)
.++++||.+||+||+ +|||+++|+.....++.+. .+.| ++
T Consensus 208 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~~~ 287 (349)
T 4fh3_A 208 LSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGS 287 (349)
T ss_dssp SCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC--------
T ss_pred hccccccccccCcccccccchhhcccccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhcccccccccCc
Confidence 368999999999999 6999999886543332221 1234 33
Q ss_pred CCCCCCCCCceEEeCCCCCCCCccCccCHhHHHHHHHHHHHHHHHHHHhhhcCCCccccccc
Q 005795 300 RKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEP 361 (677)
Q Consensus 300 ~~~~~dr~~~MpIitP~~P~~Nsa~nVs~stl~vI~~Ef~RA~~il~~i~~~~~~W~~Lfep 361 (677)
..+.....++|+|+||++|++|+|+||+..+++.|++||+||+++|++.. ...+|+.||+.
T Consensus 288 ~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~-~~~~~~~lfe~ 348 (349)
T 4fh3_A 288 ADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS-YPIPYDSLFEE 348 (349)
T ss_dssp -------CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS-SSCCGGGGGSC
T ss_pred ccccCCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc-cCCCHHHHhhc
Confidence 33444456899999999999999999999999999999999999998743 24689999985
No 4
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=1.2e-50 Score=431.87 Aligned_cols=284 Identities=17% Similarity=0.194 Sum_probs=226.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEE
Q 005795 14 KQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALI 93 (677)
Q Consensus 14 ~~~Gvt~Pis~~~Pt~~d~~~t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I 93 (677)
..-|++++++.++|+++++ +.+|++++++ .+++.+|.++|++++++|++++++. ..+++|
T Consensus 10 ~~~~~~~~~~~~~P~~~~l--~~~l~~~~~~--~~~~~~e~~~r~~~~~~l~~~i~~~----------------~p~~~v 69 (353)
T 2ikf_A 10 HSSGLVPRGSHMPPSPAVV--GRSLVNSFKQ--FVSKDLHTRHVDATYRLVLDCVAAV----------------DPLMRL 69 (353)
T ss_dssp -------------CCHHHH--HHHHHHHTTT--TCC-----CCHHHHHHHHHHHHHHH----------------CTTCEE
T ss_pred ccccceecccCCCCCHHHH--HHHHHHHHHH--hcCChhhHHHHHHHHHHHHHHHHHH----------------CCCcEE
Confidence 3469999999999999997 7899999876 4578899999999999999999863 136999
Q ss_pred EEecccc-ccCcCCCCCeeEEeecCCccCc--------------hhhHHHHHHHHHHhccCCceEEEeccCccceEEEEe
Q 005795 94 FTFGSYR-LGVHGPGADIDALCVGPSYVSR--------------EEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF 158 (677)
Q Consensus 94 ~~FGSy~-lGv~~p~SDIDil~v~P~~v~r--------------e~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~ 158 (677)
++||||+ +|+++|+||||++|+.|..+.. ..+++..+.+.|++.+.+.+++.|.+|+||||||++
T Consensus 70 ~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIiK~~~ 149 (353)
T 2ikf_A 70 YTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKG 149 (353)
T ss_dssp EEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSSSSCEEEEEC
T ss_pred EEecCccccCCCCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCCCCceEEecccceeEEEEEc
Confidence 9999998 9999999999999998753210 036788899999987778899999999999999999
Q ss_pred -cCceeeEeeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCC
Q 005795 159 -DGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNV 237 (677)
Q Consensus 159 -~GI~iDLsfa~l~~~~~p~~l~l~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~ 237 (677)
.||+|||+|++ .+|++.+++|..++..+++||+++++||+|||+||||+++
T Consensus 150 ~~~i~~Dis~~n----------------------------~~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~ 201 (353)
T 2ikf_A 150 GGAVDFDITAYR----------------------------RNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASV 201 (353)
T ss_dssp SSSCEEEEEESC----------------------------CHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCBTTS
T ss_pred CCCcEEEEEecC----------------------------ccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCC
Confidence 69999999986 4799999999999999999999999999999999999999
Q ss_pred C-CCccHHHHHHHHHHHHhhC------C------------------------CCCHHHHHHHHHHHhh-cCCCCCceeec
Q 005795 238 T-GFLGGVNWALLVARVCQLY------P------------------------NAVPSMLVSRFFRVYT-MWRWPNPVMLC 285 (677)
Q Consensus 238 ~-G~LGG~swaLLVa~vcQl~------P------------------------n~s~~~LL~~FF~~Ys-~wdW~~pV~l~ 285 (677)
. |+||||+|+|||++|||.. | +.++++||.+||+||+ +|||.++|+..
T Consensus 202 ~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi 281 (353)
T 2ikf_A 202 IGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISL 281 (353)
T ss_dssp TTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECS
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcCceEEEc
Confidence 9 9999999999999999852 3 2357999999999999 79999998753
Q ss_pred ccccccC--CcccccCC------CCCCCCCCceEEeCCCCCCCCccCccCHhHHHHHHHHHHHHHHHHH
Q 005795 286 AIDEAEL--GFSVWDPR------KNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICE 346 (677)
Q Consensus 286 ~i~~g~l--~~~~W~p~------~~~~dr~~~MpIitP~~P~~Nsa~nVs~stl~vI~~Ef~RA~~il~ 346 (677)
.. .+.+ ..+.|++. .++.++.+.|+|+||++|.+|+|++|+.++++.|++||++|++++.
T Consensus 282 ~~-~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~~ 349 (353)
T 2ikf_A 282 NR-PGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTAL 349 (353)
T ss_dssp SS-SSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTTT
T ss_pred CC-CcceechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22 1221 12467642 2233456789999999999999999999999999999999998763
No 5
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=1.5e-48 Score=423.42 Aligned_cols=305 Identities=18% Similarity=0.204 Sum_probs=244.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEE
Q 005795 14 KQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALI 93 (677)
Q Consensus 14 ~~~Gvt~Pis~~~Pt~~d~~~t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I 93 (677)
.-.|..++-|-+...+..-+++.+|.++++. +.||+||.++|++++.+|+.+++++. .+++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~--i~Pt~eE~~~R~~v~~~l~~~i~~~~----------------p~~~v 85 (405)
T 4e8f_A 24 KNLHISKSCSYQKVPNSHKEFTKFCYEVYNE--IKISDKEFKEKRAALDTLRLCLKRIS----------------PDAEL 85 (405)
T ss_dssp --------------CCSCHHHHHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEE
T ss_pred hcccccccCccccCchHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEE
Confidence 3456666666666666667888899999886 67999999999999999999999752 26899
Q ss_pred EEeccccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEe---c----CceeeEe
Q 005795 94 FTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF---D----GLSIDLL 166 (677)
Q Consensus 94 ~~FGSy~lGv~~p~SDIDil~v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~---~----GI~iDLs 166 (677)
++|||+++|+++|+||||++|+.|.....+ +++..+.+.|++. ..++..|.+|+||||||.+ . ||+|||+
T Consensus 86 ~~fGS~~~G~~~~~SDiDl~v~~~~~~~~~-~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs 162 (405)
T 4e8f_A 86 VAFGSLESGLALKNSDMDLCVLMDSRVQSD-TIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIG 162 (405)
T ss_dssp EEESHHHHTCCBSSCCEEEEEECCC---CT-THHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEE
T ss_pred EEEeeccCCCCCCCCCEEEEEEecCCCCHH-HHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEe
Confidence 999999999999999999999998865543 6888999999875 6789999999999999995 4 9999999
Q ss_pred eeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCCccHHHH
Q 005795 167 YASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNW 246 (677)
Q Consensus 167 fa~l~~~~~p~~l~l~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~sw 246 (677)
|++ .+|++.+.+|..++..+++||+++++||+|||+||||+++.|+||||+|
T Consensus 163 ~~n----------------------------~~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l 214 (405)
T 4e8f_A 163 FNN----------------------------RLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGY 214 (405)
T ss_dssp ESC----------------------------HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHH
T ss_pred ecc----------------------------cchHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHH
Confidence 987 3578889999988888899999999999999999999999999999999
Q ss_pred HHHHHHHH-hh-----CCC--------------------------------CCHHHHHHHHHHHhh-cCCCCCceeeccc
Q 005795 247 ALLVARVC-QL-----YPN--------------------------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAI 287 (677)
Q Consensus 247 aLLVa~vc-Ql-----~Pn--------------------------------~s~~~LL~~FF~~Ys-~wdW~~pV~l~~i 287 (677)
+|||++|| |. +|+ .++++||..||+||+ +|||.+.|+..+.
T Consensus 215 ~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~ 294 (405)
T 4e8f_A 215 VLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRR 294 (405)
T ss_dssp HHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSS
T ss_pred HHHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEEEec
Confidence 99999999 73 232 468999999999999 8999999876442
Q ss_pred ccccCC--cccccCCCC-------CCCCCCceEEeCCCCCCCCccCccCHhHHHHHHHHHHHHHHHHHHhhhcCCCcccc
Q 005795 288 DEAELG--FSVWDPRKN-------RRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSAL 358 (677)
Q Consensus 288 ~~g~l~--~~~W~p~~~-------~~dr~~~MpIitP~~P~~Nsa~nVs~stl~vI~~Ef~RA~~il~~i~~~~~~W~~L 358 (677)
..+.+. .+.|....+ ...+.+.|+|+||++|.+|+|++|+..+++.|++||+||+++|.+... +.+|+.|
T Consensus 295 ~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~-~~~w~~L 373 (405)
T 4e8f_A 295 PDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSY-PIPYDSL 373 (405)
T ss_dssp TTCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSS-SCCGGGG
T ss_pred CCcccccccccccccccccccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhcc-CCCHHHH
Confidence 222232 256875421 123568999999999999999999999999999999999999998542 5789999
Q ss_pred ccccchhhhc
Q 005795 359 FEPYLFFESY 368 (677)
Q Consensus 359 fep~~Ff~~Y 368 (677)
|+++++..+.
T Consensus 374 f~~~~~~~~~ 383 (405)
T 4e8f_A 374 FEEAPIPPRR 383 (405)
T ss_dssp GSCCCCC---
T ss_pred hCcCCCcccc
Confidence 9999998753
No 6
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-48 Score=407.87 Aligned_cols=267 Identities=22% Similarity=0.292 Sum_probs=228.1
Q ss_pred HhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeE
Q 005795 33 QRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDA 112 (677)
Q Consensus 33 ~~t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDIDi 112 (677)
.++++|.+++. .+.||+||.++|++++++|+++++++. .+++|++|||+++|+++|+||||+
T Consensus 20 ~L~~Ei~~f~~--~i~Pt~eE~~~R~~~~~~l~~~~~~~~----------------p~~~v~~fGS~~~g~~~~~SDiDl 81 (323)
T 3nyb_A 20 WLTFEIKDFVA--YISPSREEIEIRNQTISTIREAVKQLW----------------PDADLHVFGSYSTDLYLPGSDIDC 81 (323)
T ss_dssp HHHHHHHHHHH--HTSCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCCEEEESTTTTTCCCTTSCEEE
T ss_pred HHHHHHHHHHH--HhCcCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEeCccccCCCCCCCCceE
Confidence 35666666665 478999999999999999999998652 257899999999999999999999
Q ss_pred EeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEe--cCceeeEeeeeccccccccccccccccccCCC
Q 005795 113 LCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF--DGLSIDLLYASISRLVVREDLDISDMSVLNDV 190 (677)
Q Consensus 113 l~v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~--~GI~iDLsfa~l~~~~~p~~l~l~~d~~L~~l 190 (677)
+|+.|.......+++..+.+.|++.+.++++++|.+|+||||||.+ .||+|||+|++
T Consensus 82 ~v~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~--------------------- 140 (323)
T 3nyb_A 82 VVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFER--------------------- 140 (323)
T ss_dssp EECSSCCGGGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSC---------------------
T ss_pred EEecCCCChhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecC---------------------
Confidence 9999986532246889999999998888999999999999999996 79999999986
Q ss_pred CcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHhhCCC---------CC
Q 005795 191 DEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPN---------AV 261 (677)
Q Consensus 191 De~svrSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQl~Pn---------~s 261 (677)
.+|++++++|.++++.+++||+++++||+|||+||||+++.|+||||+|+|||+++||++|+ .+
T Consensus 141 -------~~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~ 213 (323)
T 3nyb_A 141 -------TNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDN 213 (323)
T ss_dssp -------SSTTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGC
T ss_pred -------cHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999985 36
Q ss_pred HHHHHHHHHHHhh-cCCCCCceeeccccc-ccCCcccccCCCCCCCCCCceEEeCCCCCCCCccCccCHhHHHHHHHHHH
Q 005795 262 PSMLVSRFFRVYT-MWRWPNPVMLCAIDE-AELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQ 339 (677)
Q Consensus 262 ~~~LL~~FF~~Ys-~wdW~~pV~l~~i~~-g~l~~~~W~p~~~~~dr~~~MpIitP~~P~~Nsa~nVs~stl~vI~~Ef~ 339 (677)
+++||.+||+||+ +|||++.++...... .....+.|... .+..+.+.|+|+||++|++|+++++ ..++.|++||+
T Consensus 214 lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~F~ 290 (323)
T 3nyb_A 214 LGVLLIEFFELYGKNFGYDDVALGSSDGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKAFA 290 (323)
T ss_dssp HHHHHHHHHHHHHHTCCTTTEEEEESSSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCCcEEEEecCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccch--HHHHHHHHHHH
Confidence 8999999999999 999999877533211 11223567542 2223457899999999999999985 46899999999
Q ss_pred HHHHHHHHh
Q 005795 340 YGNTICEEV 348 (677)
Q Consensus 340 RA~~il~~i 348 (677)
+|++++++-
T Consensus 291 ~A~~~L~~~ 299 (323)
T 3nyb_A 291 GAFDLLTNR 299 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999874
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=1.8e-39 Score=357.78 Aligned_cols=304 Identities=14% Similarity=0.181 Sum_probs=215.7
Q ss_pred CCCHHHHHh-hHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccc-cccC
Q 005795 26 GPTEADMQR-NRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSY-RLGV 103 (677)
Q Consensus 26 ~Pt~~d~~~-t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy-~lGv 103 (677)
.|.+..++. ...+.+...+.. +++++.+.|+.++++|+.++++|. .+++|++|||| .+|+
T Consensus 11 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~a~~~l~~~v~~~~----------------p~a~v~~FGS~v~~Gl 72 (468)
T 2b4v_A 11 NPSPDHYAVWGKAIMAENNRRV--GPEHMFRTAIRAQQQLQGLADKWT----------------PDAKVYCCGSMVTYGQ 72 (468)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHB--CCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEEEEETHHHHHSS
T ss_pred CCChHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHC----------------CCcEEEEeeCchhcCC
Confidence 455555543 334444444433 788999999999999999999874 36999999999 7999
Q ss_pred cCCCCCeeEEeecCCccCch-hhHH--HHHHHHHHhc-cC--CceEEEeccCccceEEEEecC-----------------
Q 005795 104 HGPGADIDALCVGPSYVSRE-EDFF--FILHNILAEM-EE--VTELQPVLDAHVPVMKFKFDG----------------- 160 (677)
Q Consensus 104 ~~p~SDIDil~v~P~~v~re-~dFf--~~l~~~L~~~-~~--V~~l~~I~~ArVPIIKf~~~G----------------- 160 (677)
++|+||||++|+.+...... .... .++...|++. ++ +.++++|.+||||||||.+.+
T Consensus 73 ~lp~SDiDl~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~ 152 (468)
T 2b4v_A 73 MERGSDLDLACMFDDPYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEED 152 (468)
T ss_dssp CBTTCCEEEEEECSSSSCCHHHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHH
T ss_pred CCCCCceeEEEecCCCCccchhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEeccccccccccccccccccc
Confidence 99999999999987322111 1111 2477888875 44 578999999999999998322
Q ss_pred -------------------------------------------ceeeEeeeeccc-----cccccc--cc--cccccccC
Q 005795 161 -------------------------------------------LSIDLLYASISR-----LVVRED--LD--ISDMSVLN 188 (677)
Q Consensus 161 -------------------------------------------I~iDLsfa~l~~-----~~~p~~--l~--l~~d~~L~ 188 (677)
..+|++|.+... ...|+. +. +.++-...
T Consensus 153 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 232 (468)
T 2b4v_A 153 RKARTALLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRD 232 (468)
T ss_dssp HHHTEEEEEEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEE
T ss_pred cccccccccccccccccccccchhhhcccccccccccccccccccceeecccccchhhhhcccccccccccccccccccc
Confidence 224566664211 001110 00 00000001
Q ss_pred CCC------------cccccccchhhHHHHHHHhCCCchh-HHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHh
Q 005795 189 DVD------------EPTVRSLNGCRVADQILKLVPNVEH-FCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQ 255 (677)
Q Consensus 189 ~lD------------e~svrSLNG~Rvtd~Il~lVp~~~~-FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQ 255 (677)
.+| +-|+. .+|++.+.+|..++-.+++ ||+|+++||+|||+||||+++.|+||||+|+|||++|+|
T Consensus 233 ~ld~rf~~~~~gi~~DISfn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ 311 (468)
T 2b4v_A 233 VLDVRFVPEMFMYRWDISFV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLL 311 (468)
T ss_dssp ESCTTSCCGGGSSCEEEESC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHH
T ss_pred cccccccccccceEEEEecc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHH
Confidence 111 23555 7999999999999888889 999999999999999999999999999999999999998
Q ss_pred hC-----------------CC------------CCHHHHHHHHHHHhh-cCCCCCceeecccccccC--CcccccCCCCC
Q 005795 256 LY-----------------PN------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAIDEAEL--GFSVWDPRKNR 303 (677)
Q Consensus 256 l~-----------------Pn------------~s~~~LL~~FF~~Ys-~wdW~~pV~l~~i~~g~l--~~~~W~p~~~~ 303 (677)
.. |+ .++++||.+||+||+ +|||.+.|+.... .+.+ ..+.|+...+.
T Consensus 312 ~~~~lP~v~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~-g~~~~K~~~~w~~~~n~ 390 (468)
T 2b4v_A 312 VTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNR-NRRSYRSDIGWNFPQNK 390 (468)
T ss_dssp HTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSS-SSCEEHHHHTCCCGGGE
T ss_pred hcCcCCCCCcccccchhhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEEecC-Ccceecccccccccccc
Confidence 64 11 148999999999999 8999998774321 1111 12457642221
Q ss_pred -CCCCCceEEeCCCCC----CCCccCccCHhHHHHHHHHHHHHHHHHHHhh
Q 005795 304 -RDKTHHMPIITPAYP----CMNSSYNVSTSTLRVMMDQFQYGNTICEEVE 349 (677)
Q Consensus 304 -~dr~~~MpIitP~~P----~~Nsa~nVs~stl~vI~~Ef~RA~~il~~i~ 349 (677)
....+.|+|+||++| .+|+|++|+..+++.|++||++|+++|++..
T Consensus 391 ~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 391 KGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp ETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 112357999999999 9999999999999999999999999998754
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=4.6e-37 Score=330.22 Aligned_cols=280 Identities=15% Similarity=0.195 Sum_probs=214.9
Q ss_pred HHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCee
Q 005795 32 MQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADID 111 (677)
Q Consensus 32 ~~~t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDID 111 (677)
-++++|+.++.+. +.||++|.+.|.+++.+|++++++. + .+++|++|||+.+|+++|+||||
T Consensus 5 ~~lt~EI~dFy~~--i~PT~eE~~~R~~vv~~l~~ii~~~--------------~--p~~~v~~FGS~~tgl~lp~SDiD 66 (384)
T 3hj4_A 5 REFIRGMMAHYRA--SLPPPEHSVVIHELQKRVLDIGMLA--------------V--NKAHVELFGSHVSGFCTPHSDAD 66 (384)
T ss_dssp HHHHHHHHHHHHH--HSCCTTHHHHHHHHHHHHHHHHHHH--------------S--TTCEEEEESHHHHSCCCTTCCEE
T ss_pred hHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHH--------------C--CCcEEEEeeeccCCCCCCCCCee
Confidence 3567778777764 6799999999999999999999853 1 36999999999999999999999
Q ss_pred EEeecCCccC----chh---hHHHHHHHHHHh---ccCCceEEEeccCccceEEEEe--cCceeeEeeeecccccccccc
Q 005795 112 ALCVGPSYVS----REE---DFFFILHNILAE---MEEVTELQPVLDAHVPVMKFKF--DGLSIDLLYASISRLVVREDL 179 (677)
Q Consensus 112 il~v~P~~v~----re~---dFf~~l~~~L~~---~~~V~~l~~I~~ArVPIIKf~~--~GI~iDLsfa~l~~~~~p~~l 179 (677)
+++..+.... .+. .....+.+ |++ ..+++.+. |.+||||||||.+ .|++|||+|++
T Consensus 67 lvI~~~~~~~~~~~~~~~~~~~~lrll~-L~k~~~~~~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn---------- 134 (384)
T 3hj4_A 67 ISLTYRNFSPWLQGMERVDEQNNKRMTR-FGKEASAMGMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGN---------- 134 (384)
T ss_dssp EEEECTTCCGGGTTCHHHHHHHHHHHHH-HHHHHHHHTCEEEE-EECSSSCEEEEECTTTCCEEEEEECC----------
T ss_pred EEEecCCCcccccccchhhHHHHHHHHH-HHhhcccCCeeEEe-ecCcccCEEEEEEcCCCeEEEEEecc----------
Confidence 9998865321 010 01111111 222 23666665 4599999999997 69999999987
Q ss_pred ccccccccCCCCcccccccchhhHHHHHHHhCCC-chhHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHhhCC
Q 005795 180 DISDMSVLNDVDEPTVRSLNGCRVADQILKLVPN-VEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYP 258 (677)
Q Consensus 180 ~l~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVp~-~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQl~P 258 (677)
.+|++.+.+|..+... +++||+|+++||+||++|||++++.|+||||+|+|||++|||..|
T Consensus 135 ------------------~~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~ 196 (384)
T 3hj4_A 135 ------------------IGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELG 196 (384)
T ss_dssp ------------------HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHT
T ss_pred ------------------cchHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCC
Confidence 3688889888888877 557999999999999999999999999999999999999999742
Q ss_pred ---CC------------------------------------CHHHH----HHHHHHHhhcCCCCCceee-cccccc-c--
Q 005795 259 ---NA------------------------------------VPSML----VSRFFRVYTMWRWPNPVML-CAIDEA-E-- 291 (677)
Q Consensus 259 ---n~------------------------------------s~~~L----L~~FF~~Ys~wdW~~pV~l-~~i~~g-~-- 291 (677)
+. ++++| |.+||+||+.|||.+-|+. .++... .
T Consensus 197 vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~ 276 (384)
T 3hj4_A 197 LLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVY 276 (384)
T ss_dssp SSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHH
T ss_pred CCCccccccccCCcccccccHhhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCccccccc
Confidence 11 26777 9999999999999998764 332211 0
Q ss_pred ----------CC---cccccCC------C----------------CCCCCCCceEEeCCCCCCCCccCccCHhHHHHHHH
Q 005795 292 ----------LG---FSVWDPR------K----------------NRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMD 336 (677)
Q Consensus 292 ----------l~---~~~W~p~------~----------------~~~dr~~~MpIitP~~P~~Nsa~nVs~stl~vI~~ 336 (677)
++ -+.|... . -++..+.++.|++ +.-.+|+++.|+.+....|+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 355 (384)
T 3hj4_A 277 ERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQ 355 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHH
T ss_pred chhhhhhhhhccchhhhhhhhhhhccccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHHH
Confidence 01 2445410 0 1233567899999 999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCccccccc
Q 005795 337 QFQYGNTICEEVELNKAQWSALFEP 361 (677)
Q Consensus 337 Ef~RA~~il~~i~~~~~~W~~Lfep 361 (677)
||+||++|+.+=+ ++...+++|..
T Consensus 356 ~~~~~~~~~~~~~-~~~~~~~~~~~ 379 (384)
T 3hj4_A 356 EFNRLREMLIDKE-SELKFDEVFRE 379 (384)
T ss_dssp HHHHHHHHHTTTG-GGCCHHHHTCC
T ss_pred HHHHHHHHHhccc-ccccHHHHhhh
Confidence 9999999997633 23456666644
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=7e-36 Score=328.24 Aligned_cols=248 Identities=16% Similarity=0.260 Sum_probs=193.4
Q ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeEEe
Q 005795 35 NRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALC 114 (677)
Q Consensus 35 t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDIDil~ 114 (677)
++++.++++ .+-||++|.+.|..++.+|++++++. + .+++|++|||+.+|+++|+||||+++
T Consensus 135 ~~EI~~f~~--~i~PT~eE~~~R~~vv~~le~ii~~~--------------f--P~a~V~~FGS~~tGL~lp~SDIDlvl 196 (464)
T 3pq1_A 135 DDQLNTLLK--EFQLTEENTKLRYLTCSLIEDMAAAY--------------F--PDCIVRPFGSSVNTFGKLGCDLDMFL 196 (464)
T ss_dssp HHHHHHHHH--HHBCCHHHHHHHHHHHHHHHHHHTTT--------------S--TTCEEEEEGGGTSSCCBTTCCEEEEE
T ss_pred HHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHH--------------C--CCCEEEEeCCCccCCCCCCCCeEEEE
Confidence 445555554 46699999999999999999999852 1 36999999999999999999999988
Q ss_pred ecCCccC--------------------ch----hhHHHHHHHHHHhc-cCCceEEEeccCccceEEEEec--CceeeEee
Q 005795 115 VGPSYVS--------------------RE----EDFFFILHNILAEM-EEVTELQPVLDAHVPVMKFKFD--GLSIDLLY 167 (677)
Q Consensus 115 v~P~~v~--------------------re----~dFf~~l~~~L~~~-~~V~~l~~I~~ArVPIIKf~~~--GI~iDLsf 167 (677)
..+.... .+ ..++..+.+.|++. +++.+++.|.+||||||||.+. ||+|||+|
T Consensus 197 ~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~ 276 (464)
T 3pq1_A 197 DLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALTT 276 (464)
T ss_dssp ECC-----CCSCEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEEEC
T ss_pred ecCCcccccccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEEec
Confidence 6543210 00 13455667777764 6788999999999999999994 99999999
Q ss_pred eeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCC-ccHHHH
Q 005795 168 ASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGF-LGGVNW 246 (677)
Q Consensus 168 a~l~~~~~p~~l~l~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~-LGG~sw 246 (677)
++ .+|++.+.+|..+...+++||+|+++||+|||+|||++++.|+ ||||+|
T Consensus 277 nn----------------------------~~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL 328 (464)
T 3pq1_A 277 NN----------------------------RIALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSL 328 (464)
T ss_dssp SC----------------------------TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHH
T ss_pred CC----------------------------CcHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHH
Confidence 87 3688999999999988999999999999999999999999997 999999
Q ss_pred HHHHHHHHhhCC-----C------------------------------------CCHHHHHHHHHHHhhcCCCCCceeec
Q 005795 247 ALLVARVCQLYP-----N------------------------------------AVPSMLVSRFFRVYTMWRWPNPVMLC 285 (677)
Q Consensus 247 aLLVa~vcQl~P-----n------------------------------------~s~~~LL~~FF~~Ys~wdW~~pV~l~ 285 (677)
+|||++|+|... + .++++||..||+||++|||.+.|+.
T Consensus 329 ~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIs- 407 (464)
T 3pq1_A 329 TMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXXX- 407 (464)
T ss_dssp HHHHHHHHHSCC-------CCSHHHHTTC---------------------CCCCCCHHHHHHHHHHHGGGCCCCCCCCC-
T ss_pred HHHHHHHHHccCCCcCCChHHhccccCcccceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCcccccc-
Confidence 999999999752 1 1469999999999999999986652
Q ss_pred ccccccCCcccccCCCCCCCCCCceEEeCCCCCCCCccCccCHhHHHHHHHHHHHHHHHHHHhhh------cCCCcc--c
Q 005795 286 AIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVEL------NKAQWS--A 357 (677)
Q Consensus 286 ~i~~g~l~~~~W~p~~~~~dr~~~MpIitP~~P~~Nsa~nVs~stl~vI~~Ef~RA~~il~~i~~------~~~~W~--~ 357 (677)
| ..|++.||+...+..++.|+++|.-||+.-.. .+.+|. .
T Consensus 408 --------------------------I------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~~~~~~~~~~~~~wgl~~ 455 (464)
T 3pq1_A 408 --------------------------X------XXXXXXXVSQSQLQKFVDLARESAWILQQEDTDRPSISSNRPWGLVS 455 (464)
T ss_dssp --------------------------C------C-------CHHHHHHHHHHHHHHHHHHHCC-----------CCTTGG
T ss_pred --------------------------c------ccccccccCHHHHHHHHHHHHHHHHHHhhccccCcCCCCCCCcchHH
Confidence 1 67999999999999999999999999985332 234574 5
Q ss_pred cccc
Q 005795 358 LFEP 361 (677)
Q Consensus 358 Lfep 361 (677)
|+.|
T Consensus 456 ll~~ 459 (464)
T 3pq1_A 456 LLLP 459 (464)
T ss_dssp GCC-
T ss_pred Hhcc
Confidence 5555
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.36 E-value=8.9e-11 Score=128.52 Aligned_cols=297 Identities=17% Similarity=0.167 Sum_probs=183.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCC-CCeeEEee
Q 005795 37 ELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPG-ADIDALCV 115 (677)
Q Consensus 37 ~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~-SDIDil~v 115 (677)
.+.++|.. +-|+++|.++=.++.+.|...+++ + +.+++..|||+-|.++++ ||||+.++
T Consensus 6 ~~~~~l~~--i~P~~~E~~~~~~~~~~I~~~L~~-~-----------------~~~v~~~GS~AkgT~Lrg~sDIDIfv~ 65 (437)
T 1r89_A 6 ILEKALEL--VIPDEEEVRKGREAEEELRRRLDE-L-----------------GVEYVFVGSYARNTWLKGSLEIDVFLL 65 (437)
T ss_dssp HHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHH-H-----------------TCCEEEEHHHHHTCCCTTCCEEEEEEE
T ss_pred HHHHHHHh--hCCCHHHHHHHHHHHHHHHHHHHh-C-----------------CCeEEEeccccCCCcCCCCCCceEEEE
Confidence 45566653 679999988877777777777765 1 258899999999999986 89999999
Q ss_pred cCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecCceeeEeeeeccccccccccccccccccCCCCcccc
Q 005795 116 GPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTV 195 (677)
Q Consensus 116 ~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~~~~p~~l~l~~d~~L~~lDe~sv 195 (677)
.|....++ ++=..-..++++.-. +. .+.-|.-|-|...+.|+++|++=|- ++.+..- +
T Consensus 66 f~~~~~~e-~l~~~~l~~~~e~l~--~~-~~~ya~hpyV~~~f~g~~vDVVP~y----------~v~~g~~--------~ 123 (437)
T 1r89_A 66 FPEEFSKE-ELRERGLEIGKAVLD--SY-EIRYAEHPYVHGVVKGVEVDVVPCY----------KLKEPKN--------I 123 (437)
T ss_dssp ECTTSCHH-HHHHHHHHHHHHHSS--SE-EEEESSSEEEEEEETTEEEEEEEEE----------CCSSSSC--------C
T ss_pred cCCCCCHH-HHHHHHHHHHHHHHH--Hh-hhhccCCceEEEEecceEEEEEEEE----------EccCCcc--------c
Confidence 98876543 332222223332110 11 2456667888888999999998442 1111110 0
Q ss_pred cccchhhHHHHHHHhCCC-chhHHHHHHHHHHHHHHhCCCCC--CCCCccHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 005795 196 RSLNGCRVADQILKLVPN-VEHFCTTLRCLKFWAKRRGVYSN--VTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRV 272 (677)
Q Consensus 196 rSLNG~Rvtd~Il~lVp~-~~~FR~llr~IK~WAK~RGIysn--~~G~LGG~swaLLVa~vcQl~Pn~s~~~LL~~FF~~ 272 (677)
..++.-+..-.+++-. ...++..+|++|+|.|..|+|++ ..++++||.+-||++++ -+...+|..+
T Consensus 124 --~tavDrtp~H~~fv~~r~~~~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y------G~f~~vl~~~--- 192 (437)
T 1r89_A 124 --KSAVDRTPFHHKWLEGRIKGKENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY------GSFLETVKNA--- 192 (437)
T ss_dssp --CSHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH------SSHHHHHHHH---
T ss_pred --cccccCcHHHHHHHHhhhhhhhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH------cCHHHHHHHH---
Confidence 0122112233333322 11288999999999999999987 46789999999999994 1223333333
Q ss_pred hhcCCCCCceeecccccccCCcccccCCCCCCCCCCceEEeCCCCCCCCccCccCHhHHHHHHHHHHHHHHHHHHhhhcC
Q 005795 273 YTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNK 352 (677)
Q Consensus 273 Ys~wdW~~pV~l~~i~~g~l~~~~W~p~~~~~dr~~~MpIitP~~P~~Nsa~nVs~stl~vI~~Ef~RA~~il~~i~~~~ 352 (677)
+ +|..++.+.- +.+ +.. ...++.|+||.+|..|+|.++|..++..+..+-+... ...
T Consensus 193 -~--~w~~~~~Id~-~~~--------~~~----~~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l---~~p---- 249 (437)
T 1r89_A 193 -R--RWTRRTVIDV-AKG--------EVR----KGEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFM---EAP---- 249 (437)
T ss_dssp -T--TCCTTEEEEG-GGT--------EEE----ECSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHH---HSC----
T ss_pred -H--HhCCCeEEec-CCC--------ccc----CCCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHH---hCc----
Confidence 3 5666776532 100 011 1357899999999999999999988888776554332 321
Q ss_pred CCcccccccc--------chhh----hcccEEEEEEEeCChhhhhhhhhHHHHHHHHHHHHhhhcccCceee
Q 005795 353 AQWSALFEPY--------LFFE----SYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQC 412 (677)
Q Consensus 353 ~~W~~Lfep~--------~Ff~----~Yk~yl~I~v~a~~~e~~~~w~GwVESRlR~Lv~~lE~~~~~~l~a 412 (677)
+ .++|.|. .+-. +=.+.+.|....++.-+- ..-|-++--.+.|...||+.....+..
T Consensus 250 -s-~~~f~~~~~~~~~~~~~~~~~~~r~t~~~~~~f~~p~~~~D-~l~pQl~k~~~~i~~~L~~~gF~v~~~ 318 (437)
T 1r89_A 250 -S-LGFFKPKHPLEIEPERLRKIVEERGTAVFAVKFRKPDIVDD-NLYPQLERASRKIFEFLERENFMPLRS 318 (437)
T ss_dssp -C-GGGGSCCCCCCCCHHHHHHHHHHHTCEEEEEEEECCSCCHH-HHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred -c-HHhcCCCCccccCHHHHHHHHHhCCcEEEEEEECCCCCCcc-cchHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 1 2233221 1111 122456666655543222 344677777778888888876555543
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.08 E-value=1.3e-08 Score=108.04 Aligned_cols=272 Identities=14% Similarity=0.149 Sum_probs=143.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCC-eEEEEeccccccCcCCC-CCeeEE
Q 005795 36 RELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDAN-ALIFTFGSYRLGVHGPG-ADIDAL 113 (677)
Q Consensus 36 ~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~-~~I~~FGSy~lGv~~p~-SDIDil 113 (677)
..|.+++.+ .+-|+.++...=..+++.|...+++- +.. + .. .... .+++.+|||+-|.++++ ||||++
T Consensus 9 ~~l~~fi~~-~l~p~~~~~~~i~~~~~~I~~~L~~~----~~~-~--~~--~~~~v~~v~~~GSyargT~lrg~sDiDlv 78 (349)
T 1px5_A 9 RDLDKFIED-HLLPNTXFRTQVKEAIDIVXRFLKER----CFQ-G--TA--DPVRVSKVVKGGSSGKGTTLRGRSDADLV 78 (349)
T ss_dssp GGHHHHHHH-HTSCCHHHHHHHHHHHHHHHHHHHHH----TTC-C-------CCEEEEEEEEEEC--------CEEEEEE
T ss_pred HHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhh----hcc-c--cc--CCcceEEEEEecCcCCCcccCCCCceeEE
Confidence 357788863 57899888876666666666666642 111 1 00 0012 37889999999999985 899999
Q ss_pred eecCCccCch------hhHHHHHHHHHHhc---cCCc-eEEEe-ccCccc-eEEEEe------cCceeeEeeeecccccc
Q 005795 114 CVGPSYVSRE------EDFFFILHNILAEM---EEVT-ELQPV-LDAHVP-VMKFKF------DGLSIDLLYASISRLVV 175 (677)
Q Consensus 114 ~v~P~~v~re------~dFf~~l~~~L~~~---~~V~-~l~~I-~~ArVP-IIKf~~------~GI~iDLsfa~l~~~~~ 175 (677)
++.+...+.+ ..+...+.+.|.+. ..+. ..... ..-..| .+.|.+ .|++|||+-|--....+
T Consensus 79 V~l~~~~~~~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~ 158 (349)
T 1px5_A 79 VFLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQW 158 (349)
T ss_dssp EEEESCSCTTHHHHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSC
T ss_pred EEECCCCchhhHHhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhccc
Confidence 9988653332 13444455555531 1222 22211 111245 366666 57999988654211100
Q ss_pred -----ccccccccccccCC----CCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCCccHHHH
Q 005795 176 -----REDLDISDMSVLND----VDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNW 246 (677)
Q Consensus 176 -----p~~l~l~~d~~L~~----lDe~svrSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~sw 246 (677)
|+ -++..+ ++.. -+......-.-..-.+++.. +...|+.++|+||+|.++.+. ....+.+.||.+
T Consensus 159 ~~~~~~~-~~~y~~-li~~~~~~~~~g~~~~~~~~~h~~~v~~---~~~~~k~lIRLlK~W~~~~~~-~~~~~~~ssy~l 232 (349)
T 1px5_A 159 TPGYKPN-PEIYVQ-LIKECKSRGKEGEFSTCFTELQRDFLRN---RPTKLKSLIRLVKHWYQTCKK-THGNKLPPQYAL 232 (349)
T ss_dssp CTTSCCC-HHHHHH-HHHHHHHHTCTTTTGGGGHHHHHHHHHS---SCHHHHHHHHHHHHHHHHHHT-TCSSCCCCHHHH
T ss_pred ccccCCC-hHHHHH-HHhhccccccCccchhcCHHHHHHHHHh---CcHHHHHHHHHHHHHHHHhhh-cccCCCCChHHH
Confidence 00 000000 0000 00000000000111233322 246899999999999998764 223467899999
Q ss_pred HHHHHHHHhhCCCC---CHHHHHHHHHHHhhcCCCCCceeecccccccCCcccccCCCCCCC-----------CCCceEE
Q 005795 247 ALLVARVCQLYPNA---VPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRD-----------KTHHMPI 312 (677)
Q Consensus 247 aLLVa~vcQl~Pn~---s~~~LL~~FF~~Ys~wdW~~pV~l~~i~~g~l~~~~W~p~~~~~d-----------r~~~MpI 312 (677)
-||+++.....+.. +...-+..+|++-++|.- -.|. |..-.+..+ +...-.|
T Consensus 233 ELL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~~-~~i~-------------w~~~y~~~~~~~~~fl~~~l~~~~p~I 298 (349)
T 1px5_A 233 ELLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQK-LCIF-------------WEAYYDFTNPVVGRCMLQQLKKPRPVI 298 (349)
T ss_dssp HHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGGG-CEEC-------------CCSSCCSSSHHHHHHHHHHHTSSSCEE
T ss_pred HHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCc-ccee-------------eeccccccchhHHhhhhhhhcCCCCee
Confidence 99999988766543 466778888888887631 1121 211000000 0122369
Q ss_pred eCCCCCCCCccCccCHhHHHHHHHHH
Q 005795 313 ITPAYPCMNSSYNVSTSTLRVMMDQF 338 (677)
Q Consensus 313 itP~~P~~Nsa~nVs~stl~vI~~Ef 338 (677)
+||+.|..|++.. +......+..|.
T Consensus 299 ~DP~dp~~NVa~~-~~~~~~~~~~~A 323 (349)
T 1px5_A 299 LDPADPTGNVGGG-DTHSWQRLAQEA 323 (349)
T ss_dssp BCTTCTTCBTTCS-CHHHHHHHHHHH
T ss_pred eCCCCCCCcccCC-chhhHHHHHHHH
Confidence 9999999998877 776777766433
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=97.94 E-value=0.0019 Score=69.19 Aligned_cols=224 Identities=15% Similarity=0.082 Sum_probs=137.7
Q ss_pred CCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCC
Q 005795 27 PTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGP 106 (677)
Q Consensus 27 Pt~~d~~~t~~L~~~L~~~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p 106 (677)
|.+.|-..+..|.+-= ..+.||++|..+=..++.+++.++...+. ..|.-+ -.=..|...|||.-|+++.
T Consensus 20 ~~~~d~~~~~~llkr~--~~l~Ps~eEq~~v~~lv~kI~~~ld~liv----~pg~~e----~~L~~V~rVGs~aKgtll~ 89 (364)
T 4at7_A 20 PAPDETSFSEALLKRN--QDLAPNSAEQASILSLVTKINNVIDNLIV----APGTFE----VQIEEVRQVGSYKKGTMTT 89 (364)
T ss_dssp CCCCCHHHHHHHHHHH--HHHSCCHHHHHHHHHHHHHHHHHHHHHHH----CCTTCS----SCEEEEEEEHHHHHTCCCT
T ss_pred CCCChHHHHHHHHhcC--CccCCCHHHHHHHHHHHHHHHHHHHhhhc----CCCccc----cccceeEEeccccCCceec
Confidence 5556666666665533 36899999999888888888888877552 333211 0115789999999999999
Q ss_pred CC-CeeEEeecCCccCch--hhHHHHHHHHHHhccCCceEE-EeccCccceEEEEecCceeeEeeeeccccccccccccc
Q 005795 107 GA-DIDALCVGPSYVSRE--EDFFFILHNILAEMEEVTELQ-PVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDIS 182 (677)
Q Consensus 107 ~S-DIDil~v~P~~v~re--~dFf~~l~~~L~~~~~V~~l~-~I~~ArVPIIKf~~~GI~iDLsfa~l~~~~~p~~l~l~ 182 (677)
|. |+|++|++-.-.+.+ +...+++.+-|+....-..+. .+.+|-+=| .-.+-.+=+.+.. .|.++.-.
T Consensus 90 G~~~~dlVvl~k~lPT~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~~I---~~~~~~v~i~It~-----tsp~lrk~ 161 (364)
T 4at7_A 90 GHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEI---SSSDATVKILITT-----VPPNLRKL 161 (364)
T ss_dssp TCCEEEEEEEESSCCBHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEEEE---ECSSCEEEEEEEE-----CHHHHHTC
T ss_pred CCCceeEEEEecCCCCHHHHHHHHHHHHHHhhhhccccceeeccCcceEEE---ecCCCcEEEEEEe-----CChhhccC
Confidence 76 899999997776653 113344555555431111111 111111111 0011111111111 11122111
Q ss_pred cccccCCCC-cccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHhhCC---
Q 005795 183 DMSVLNDVD-EPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYP--- 258 (677)
Q Consensus 183 ~d~~L~~lD-e~svrSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaLLVa~vcQl~P--- 258 (677)
+ +-..+| ..|..+|-.+|-+.++.....+ ...+.++|++|.-.++.. .++.|.+|++-+|+.+..-.-|
T Consensus 162 d--p~~~Ld~~~cl~aLaalRhAkWfq~na~~-s~v~~lIRIlkDlc~R~~----~w~pL~~waLELL~~~Ai~s~~~~~ 234 (364)
T 4at7_A 162 D--PELHLDIKVLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRFP----GFEPLTPWILDLLGHYAVMNNPTRQ 234 (364)
T ss_dssp C--TTTBCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCG----GGTTCCHHHHHHHHHHHHHSSTTSS
T ss_pred C--hhHhcCHHHHHHHHHHhhhhHHHHhhccc-cccceeehhhHHHHHhcC----CcCCCCHHHHHHHHHHHHhcCCCCC
Confidence 1 111234 3477788889999988877765 667889999999666542 2467888777777777776545
Q ss_pred CCCHHHHHHHHHHHhhc
Q 005795 259 NAVPSMLVSRFFRVYTM 275 (677)
Q Consensus 259 n~s~~~LL~~FF~~Ys~ 275 (677)
..+++.-+.++|+..+.
T Consensus 235 ~l~~~~afRRVLElLAs 251 (364)
T 4at7_A 235 PLALNVAYRRCLQILAA 251 (364)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 46799999999999874
No 13
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=97.28 E-value=0.016 Score=62.49 Aligned_cols=260 Identities=18% Similarity=0.194 Sum_probs=154.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCCC-c---------c---------c---cccCCeEEEEecccc
Q 005795 46 GLYESKEEDEKREQVLGRIRQIAK---DWVKELTRLRGYS-D---------Q---------M---VEDANALIFTFGSYR 100 (677)
Q Consensus 46 ~l~pS~EE~~~R~~VL~~L~~iv~---~wv~~v~~~~g~~-~---------~---------~---~~~~~~~I~~FGSy~ 100 (677)
.+||++||.+.=+.++..++..+| +|+.+..+..+-. + . . ....=.-|.-+|++.
T Consensus 22 ~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~la 101 (383)
T 4at7_B 22 SVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGLVA 101 (383)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEeceec
Confidence 589999999999999999988776 6665422111100 0 0 0 000113466799999
Q ss_pred ccCcCCC-CCeeEEeecCCccCchhhHHHHHHHHHHh-ccCCc----eE-EEeccCccceEEEEecCceeeEeeeecccc
Q 005795 101 LGVHGPG-ADIDALCVGPSYVSREEDFFFILHNILAE-MEEVT----EL-QPVLDAHVPVMKFKFDGLSIDLLYASISRL 173 (677)
Q Consensus 101 lGv~~p~-SDIDil~v~P~~v~re~dFf~~l~~~L~~-~~~V~----~l-~~I~~ArVPIIKf~~~GI~iDLsfa~l~~~ 173 (677)
-|+.+.| -+.|+++++..-.++ .+...+.+.|.+ +..++ ++ ..+.+|.+=|-.-....+.|=|.+.+.
T Consensus 102 KGlLLkGd~~veLVvlck~kPT~--~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i~i~~~~~p~~~v~I~lTSp--- 176 (383)
T 4at7_B 102 KGLLLKGDLDLELVLLCKEKPTT--ALLDKVADNLAIQLTTVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSP--- 176 (383)
T ss_dssp HTCCCTTCCEEEEEEEESSCCBH--HHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEEEEECSSSSCCEEEEEEECH---
T ss_pred ccceECCCCceeEEEEeCCCCcH--HHHHHHHHHHHHHHhhccCCceEEeecCCcceEEEecCCCCCeEEEEEECCc---
Confidence 9999964 599999999887775 455555554442 12221 22 223444322211101134455555443
Q ss_pred cccccc-------ccccccccCCCC-cccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCCccHHH
Q 005795 174 VVREDL-------DISDMSVLNDVD-EPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVN 245 (677)
Q Consensus 174 ~~p~~l-------~l~~d~~L~~lD-e~svrSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~s 245 (677)
.+++++ .+...++-..|| ..|+.+|-.+|-+.++............++|++|.-.++.- -++-|.+|+
T Consensus 177 ~~re~~~~~~~~~~~~~~dp~d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~----~~~pL~~wa 252 (383)
T 4at7_B 177 VVREEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVP----TWGPLRGWP 252 (383)
T ss_dssp HHHHHHHHHHTTCCCCCCCCTTBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCG----GGGGGTTHH
T ss_pred ccccchhhcccccccccCChhhcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcC----CcCCCcHhH
Confidence 122111 010011111233 35888888888888777766666677889999999766652 235688888
Q ss_pred HHHHHHHHHhhCC--CCCHHHHHHHHHHHhhcC-CCCC-ceeecccccccCCcccccCCCCCCCCCCceEEeCCCC--CC
Q 005795 246 WALLVARVCQLYP--NAVPSMLVSRFFRVYTMW-RWPN-PVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAY--PC 319 (677)
Q Consensus 246 waLLVa~vcQl~P--n~s~~~LL~~FF~~Ys~w-dW~~-pV~l~~i~~g~l~~~~W~p~~~~~dr~~~MpIitP~~--P~ 319 (677)
+-||+.+..-. + +.++++-+.+||+..+.- --|. | -|.||+. |.
T Consensus 253 LELL~~~ai~s-~~~~l~~~~afRRVLEllasG~lLp~~p-----------------------------gI~DPcEk~pt 302 (383)
T 4at7_B 253 LELLCEKSIGT-ANRPMGAGEALRRVLECLASGIVMPDGS-----------------------------GIYDPCEKEAT 302 (383)
T ss_dssp HHHHHHHHHHT-SSSCCCHHHHHHHHHHHHHTTTTSTTSC-----------------------------CCBCTTCSSCC
T ss_pred HHHHHHHHhhC-CCCCCCHHHHHHHHHHHHhcCcccCCCC-----------------------------CccCCCCCCCc
Confidence 88888777653 3 357899999999998852 2221 2 2456676 65
Q ss_pred CCccCccCHhHHHHHHHHHHHHHHHH
Q 005795 320 MNSSYNVSTSTLRVMMDQFQYGNTIC 345 (677)
Q Consensus 320 ~Nsa~nVs~stl~vI~~Ef~RA~~il 345 (677)
.|.+ ..+......|..+-+.+.+++
T Consensus 303 ~~~~-~lt~qq~e~it~sAQ~~LR~~ 327 (383)
T 4at7_B 303 DAIG-HLDRQQREDITQSAQHALRLA 327 (383)
T ss_dssp BTTT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred cccc-cCCHHHHHHHHHHHHHHHHHH
Confidence 5555 566666777777777666554
No 14
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.26 E-value=0.00096 Score=59.75 Aligned_cols=44 Identities=18% Similarity=0.124 Sum_probs=32.5
Q ss_pred eEEEEeccccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHh
Q 005795 91 ALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAE 136 (677)
Q Consensus 91 ~~I~~FGSy~lGv~~p~SDIDil~v~P~~v~re~dFf~~l~~~L~~ 136 (677)
..|+.|||++-|-+.++||||++++.+...+. ..+..+...|.+
T Consensus 28 ~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~~--~~~~~l~~~l~~ 71 (114)
T 1no5_A 28 YTVWAFGSRVKGKAKKYSDLDLAIISEEPLDF--LARDRLKEAFSE 71 (114)
T ss_dssp SEEEEEGGGTTTCCCTTCCEEEEEECSSCCCH--HHHHHHHHHHHH
T ss_pred CEEEEEeccCCCCCCCCCCeEEEEEeCCCCCH--HHHHHHHHHHHh
Confidence 58999999999999999999999998764432 112234455554
No 15
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=97.04 E-value=0.0016 Score=58.59 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeEEeecCCc
Q 005795 55 EKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSY 119 (677)
Q Consensus 55 ~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDIDil~v~P~~ 119 (677)
..++++++.|++++....++ . + .-..++.|||++-|-+.++||||++++.+..
T Consensus 10 ~~~~~i~~~l~~~~~~l~~~----~--~------~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~ 62 (111)
T 2rff_A 10 ESQIRMLKLAKEIVEEVASS----F--P------NLEEVYIFGSRARGDYLDTSDIDILFVFKGI 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----C--T------TEEEEEEESHHHHSCCCTTCCEEEEEEESSC
T ss_pred cCHHHHHHHHHHHHHHHHHH----c--C------CccEEEEEeeeecCCCCCCCCEEEEEEecCC
Confidence 45777888888877765421 1 1 1267999999999999999999999988654
No 16
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=97.00 E-value=0.0012 Score=57.83 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeEEeecCCc
Q 005795 59 QVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSY 119 (677)
Q Consensus 59 ~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDIDil~v~P~~ 119 (677)
++++.+++.+....++ .| -..++.|||++-|-+.++||||++++.+..
T Consensus 7 ~~l~~l~~~i~~l~~~----~~---------v~~v~LFGS~arG~~~~~SDiDl~V~~~~~ 54 (98)
T 1wot_A 7 ETLRARREAVLSLCAR----HG---------AVRVRVFGSVARGEAREDSDLDLLVAFEEG 54 (98)
T ss_dssp HHHHHHHHHHHHHHHH----HT---------CSSCEECSHHHHTCCCTTCCCEEEECCCSS
T ss_pred HHHHHHHHHHHHHHHH----cC---------CcEEEEEccccCCCCCCCCCEEEEEEeCCC
Confidence 6677776666654432 22 256999999999999999999999987653
No 17
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=96.81 E-value=0.003 Score=54.99 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=26.4
Q ss_pred eEEEEeccccccCcCCC-CCeeEEeecCC
Q 005795 91 ALIFTFGSYRLGVHGPG-ADIDALCVGPS 118 (677)
Q Consensus 91 ~~I~~FGSy~lGv~~p~-SDIDil~v~P~ 118 (677)
..++.|||++-|-+.++ ||||++++.+.
T Consensus 18 ~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 18 AEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp CEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred cEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 78999999999999999 99999999875
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=94.88 E-value=0.025 Score=58.12 Aligned_cols=54 Identities=22% Similarity=0.153 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeEEeecCC
Q 005795 53 EDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPS 118 (677)
Q Consensus 53 E~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDIDil~v~P~ 118 (677)
|.-.|++|.+.|+++++...+. .+ .-.+|+.||||+-|-+.++||||++++...
T Consensus 15 ~~~~~q~Vq~eL~~ive~L~~~----~~--------~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 15 ENLYFQGVQHTIARWVDRLREE----YA--------DAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH----CT--------TEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred hccChHHHHHHHHHHHHHHHHh----cC--------CceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 3445666766776666543321 11 016799999999999999999999999754
No 19
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=94.46 E-value=0.04 Score=55.76 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=26.3
Q ss_pred eEEEEeccccccCcCCCCCeeEEeecCCc
Q 005795 91 ALIFTFGSYRLGVHGPGADIDALCVGPSY 119 (677)
Q Consensus 91 ~~I~~FGSy~lGv~~p~SDIDil~v~P~~ 119 (677)
..|+.|||++-|-..++||||++++....
T Consensus 32 ~~~~lfGS~arg~~~~~SDiD~~v~~~~~ 60 (253)
T 1kny_A 32 KAIGVYGSLGRQTDGPYSDIEMMCVMSTE 60 (253)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred eEEEEEccccCCCCCCCCCeeEEEEecCc
Confidence 67999999999999999999999987654
No 20
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=93.60 E-value=0.47 Score=50.21 Aligned_cols=117 Identities=16% Similarity=0.216 Sum_probs=77.9
Q ss_pred CCeEEEEeccccccCcCCCCCeeEEeecCCccCch---hhHHHHHHHHHHhccCCceEEEeccCccceE-EEEe------
Q 005795 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSRE---EDFFFILHNILAEMEEVTELQPVLDAHVPVM-KFKF------ 158 (677)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDIDil~v~P~~v~re---~dFf~~l~~~L~~~~~V~~l~~I~~ArVPII-Kf~~------ 158 (677)
...++..-||||=|-.+ ..|||+++..|...... ..++..+.+.|.+.+.++++......+.-++ ++..
T Consensus 171 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~~k~~~v~~l~~~~~~~~ 249 (335)
T 2fmp_A 171 SEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKE 249 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSEEEEEECCCCCTTCCC
T ss_pred CCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCCceEEEEEEeCCcccccC
Confidence 35899999999998877 56999999988432211 2578888999999888887766666654443 3322
Q ss_pred -cCceeeEeeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCC
Q 005795 159 -DGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNV 237 (677)
Q Consensus 159 -~GI~iDLsfa~l~~~~~p~~l~l~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~ 237 (677)
.++.|||.++.... ..-.++-+-.+ ..| -|-++.||+++|+.=|-
T Consensus 250 ~~~~rVDl~~vp~~~------------------------------~~~aLl~fTGS-~~f---nr~lR~~A~~kG~kl~e 295 (335)
T 2fmp_A 250 YPHRRIDIRLIPKDQ------------------------------YYCGVLYFTGS-DIF---NKNMRAHALEKGFTINE 295 (335)
T ss_dssp CCCEEEEEEECCGGG------------------------------HHHHHHHHHCC-HHH---HHHHHHHHHHTTEEECS
T ss_pred CCceEEEEEEECHHH------------------------------HHHHHHHhhCC-HHH---HHHHHHHHHHcCCcccc
Confidence 27999999876321 01122222222 233 36778899999887666
Q ss_pred CCC
Q 005795 238 TGF 240 (677)
Q Consensus 238 ~G~ 240 (677)
+|.
T Consensus 296 ~Gl 298 (335)
T 2fmp_A 296 YTI 298 (335)
T ss_dssp SCE
T ss_pred ccc
Confidence 674
No 21
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=92.21 E-value=0.59 Score=49.51 Aligned_cols=116 Identities=22% Similarity=0.261 Sum_probs=75.1
Q ss_pred CCeEEEEeccccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEec-----cCcc-ceEEEEe---c
Q 005795 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVL-----DAHV-PVMKFKF---D 159 (677)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDIDil~v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~-----~ArV-PIIKf~~---~ 159 (677)
....+..-||||=|-.+ ..|||+++..|..... ..++..+.+.|.+.+.+++..... ..+. =|.++.. .
T Consensus 168 ~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~-~~ll~~v~~~l~~~~~i~~~l~~~~~~g~~~k~~~v~~l~~~~~~ 245 (335)
T 2bcq_A 168 SGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSH-RGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRR 245 (335)
T ss_dssp TTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTT-TTCHHHHHHHHHHTTCEEEEEECCTTSTTCCEEEEEECCSSTTCC
T ss_pred CCcEEEEccccccCCCC-CCCeEEEEecCCchhh-hhHHHHHHHHHHhCCchHHHhhccccCCCCceEEEEEEccCCCCC
Confidence 35789999999999877 5699999998876543 367888889999888877654331 1122 1112221 5
Q ss_pred CceeeEeeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCC
Q 005795 160 GLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTG 239 (677)
Q Consensus 160 GI~iDLsfa~l~~~~~p~~l~l~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G 239 (677)
++.|||.++.... + .-.++-+-.+ ..| -|.++.||+++|+-=|-+|
T Consensus 246 ~~rVDl~~vp~~~--~----------------------------g~ALl~fTGS-~~f---nr~lR~~A~~~G~kL~e~G 291 (335)
T 2bcq_A 246 HRRLDIIVVPYSE--F----------------------------ACALLYFTGS-AHF---NRSMRALAKTKGMSLSEHA 291 (335)
T ss_dssp CEEEEEEECCGGG--H----------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTCEECSSC
T ss_pred ceEEEEEEECHHH--H----------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCCccccc
Confidence 7899998876321 0 1122222222 223 3778899999988766677
Q ss_pred C
Q 005795 240 F 240 (677)
Q Consensus 240 ~ 240 (677)
.
T Consensus 292 l 292 (335)
T 2bcq_A 292 L 292 (335)
T ss_dssp E
T ss_pred c
Confidence 4
No 22
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=90.29 E-value=0.66 Score=48.26 Aligned_cols=105 Identities=12% Similarity=0.144 Sum_probs=58.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCcCCCCCeeEEeecCCccCchh
Q 005795 45 AGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREE 124 (677)
Q Consensus 45 ~~l~pS~EE~~~R~~VL~~L~~iv~~wv~~v~~~~g~~~~~~~~~~~~I~~FGSy~lGv~~p~SDIDil~v~P~~v~re~ 124 (677)
.|+.|----++..++++++|.+.+++- .-=..|..+||+..|-...-||||+++++..... +
T Consensus 12 ~~~~~~~~~m~~~~e~l~~I~~~~~~d----------------~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~~~~--~ 73 (287)
T 3jz0_A 12 SGLVPRGSHMLKQKELIANVKNLTESD----------------ERITACMMYGSFTKGEGDQYSDIEFYIFLKHSIT--S 73 (287)
T ss_dssp ----------CHHHHHHHHHHHHHHHC----------------TTEEEEEECSGGGTTCCCTTCCEEEEEEECGGGT--T
T ss_pred cCcCCCCCCccCHHHHHHHHHHHHhcC----------------CCEEEEEEECCccCCCCCCccceeEEEEEcCcch--h
Confidence 466666666777778888887777641 0125689999999999999999999998754211 1
Q ss_pred hHHHHHHHHHHhccCCceEEEeccCccceEEEEe-cCceeeEeeeeccc
Q 005795 125 DFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF-DGLSIDLLYASISR 172 (677)
Q Consensus 125 dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~-~GI~iDLsfa~l~~ 172 (677)
.| .. ..-|.....+-- ..+..++- .++.| +|+.|||.|..+..
T Consensus 74 ~f-~~-~~Wl~~fG~~~~--~f~~~~~~-~l~lF~Dg~riDl~l~~~~~ 117 (287)
T 3jz0_A 74 NF-DS-SNWLFDVAPYLM--LYKNEYGT-EVVIFDNLIRGEFHFLSEKD 117 (287)
T ss_dssp TC-CH-HHHHHHHCCEEE--EEECTTSC-EEEEETTSCEEEEEEEEGGG
T ss_pred hh-hh-HHHHHHhhhhhe--Eeecccce-EEEEecCCcEEEEEEeeHHH
Confidence 22 11 233333222111 12222332 23444 79999999998753
No 23
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=88.18 E-value=0.68 Score=44.86 Aligned_cols=114 Identities=17% Similarity=0.233 Sum_probs=73.4
Q ss_pred ccccccCCeEEEEeccccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHh--ccCCc-eEEEeccCccceEEEEe-
Q 005795 83 DQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAE--MEEVT-ELQPVLDAHVPVMKFKF- 158 (677)
Q Consensus 83 ~~~~~~~~~~I~~FGSy~lGv~~p~SDIDil~v~P~~v~re~dFf~~l~~~L~~--~~~V~-~l~~I~~ArVPIIKf~~- 158 (677)
.+.....++++.+-||||=|-.+-+ |||+++..|.. ..+.+.|.+ .+.++ ++..-.+.++-+ ++..
T Consensus 24 ~~~ik~~g~~v~iaGS~RRgket~g-DiDiLit~~~~--------~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~~~ 93 (174)
T 1jaj_A 24 GQLIKILSKNIVAVGSLRREEKMLN-DVDLLIIVPEK--------KLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIEWE 93 (174)
T ss_dssp TEEEEECTTTEEEEEHHHHTCSEEC-CEEEEEEESSH--------HHHHTSSSEEEESSCEEEEEEETTTEEEE-EEESS
T ss_pred cccccCCCcEEEEeccccCCCCCCC-CEEEEEecCCH--------HHHHHHHHhccCCceeHhHeecCCCeEEE-EeCCC
Confidence 3444456788999999999988754 99999988742 235566777 77777 665555555433 3433
Q ss_pred -cCceeeEeeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCC
Q 005795 159 -DGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNV 237 (677)
Q Consensus 159 -~GI~iDLsfa~l~~~~~p~~l~l~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~ 237 (677)
.|+.|||.++....- .-.++-+-.+ +.| .+.++.||+++|+-=|-
T Consensus 94 ~~~~rVDl~~vp~~~f------------------------------g~ALl~fTGS-k~h---n~~lR~~A~~kG~~L~e 139 (174)
T 1jaj_A 94 KKTYQLDLFTALAEEK------------------------------PYAIFHFTGP-VSY---LIRIRAALKKKNYKLNQ 139 (174)
T ss_dssp SCCEEEEEEEEETTCH------------------------------HHHHHHHHSC-HHH---HHHHHHHHHHTTEEEET
T ss_pred CCceEEEEEEeCHHHH------------------------------HHHHHHhHCC-HHH---HHHHHHHHHHcCCCcCc
Confidence 689999998863210 1122222222 223 36778899999876666
Q ss_pred CCC
Q 005795 238 TGF 240 (677)
Q Consensus 238 ~G~ 240 (677)
+|.
T Consensus 140 ~Gl 142 (174)
T 1jaj_A 140 YGL 142 (174)
T ss_dssp TEE
T ss_pred ccc
Confidence 664
No 24
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=87.03 E-value=2.4 Score=45.30 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=41.3
Q ss_pred CCeEEEEeccccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCc
Q 005795 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVT 141 (677)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDIDil~v~P~~v~re~dFf~~l~~~L~~~~~V~ 141 (677)
...++..-||||=|--+ ..|||+++..|..... ..++..+.+.|.+.+.|+
T Consensus 175 ~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~-~~ll~~v~~~L~~~~~i~ 225 (360)
T 2ihm_A 175 PGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQE-VGLLPKVMSCLQSQGLVL 225 (360)
T ss_dssp TTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTT-TTHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEccccccCCCc-cCCeEEEEecCChhhh-hhHHHHHHHHHHhCCCee
Confidence 36799999999999887 5699999998876433 368888889998877765
No 25
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=83.06 E-value=7.3 Score=41.93 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=39.0
Q ss_pred CCeEEEEeccccccCcCCCCCeeEEeecCCccCch-hhHHHHHHHHHHhccCCc
Q 005795 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSRE-EDFFFILHNILAEMEEVT 141 (677)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDIDil~v~P~~v~re-~dFf~~l~~~L~~~~~V~ 141 (677)
...++..-||||=|--+ ..|||+|+..|...... ..++..+.+.|.+.+.|+
T Consensus 195 ~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~ 247 (381)
T 1jms_A 195 PDALVTMTGGFRRGKMT-GHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLL 247 (381)
T ss_dssp TTCEEEECHHHHTTCSC-BSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEccccccCCCC-cCCeEEEEeCCCccccchhhHHHHHHHHHHhCCCcc
Confidence 35799999999999877 45999999988653211 126777888888877664
No 26
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=81.24 E-value=4.9 Score=45.23 Aligned_cols=107 Identities=17% Similarity=0.095 Sum_probs=70.9
Q ss_pred CeEEEEeccccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecCceeeEeeee
Q 005795 90 NALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYAS 169 (677)
Q Consensus 90 ~~~I~~FGSy~lGv~~p~SDIDil~v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~ 169 (677)
..++..-||||=|--+- .|||+++..|... .+.+.|.+.+.|.++......++-+ ++ -.|+.|||.++.
T Consensus 180 ~~~~~~~Gs~RRgke~~-gDiD~li~~~~~~--------~v~~~l~~~~~~~~~~~~g~~k~~~-~~-~~~~rvDl~~~~ 248 (575)
T 3b0x_A 180 VERAELCGSARRYKDTV-GDLDFLVASREGE--------RAVEGFVRLPQVKEVYAKGKERATV-FL-KNGLQVDLRVVP 248 (575)
T ss_dssp CCEEEECHHHHTTCSEE-SSEEEEEECSSHH--------HHHHHHHTSTTEEEEEEECSSEEEE-EE-TTSCEEEEEEEC
T ss_pred CcEEEEccccccCCCcc-CCeEEEEeCCCHH--------HHHHHHHhCcchhhHhhcCCCceEE-Ec-cCCcEEEEEEEC
Confidence 57899999999988774 5999999887531 3566777788877665555555333 11 269999999886
Q ss_pred ccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCCc
Q 005795 170 ISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFL 241 (677)
Q Consensus 170 l~~~~~p~~l~l~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVp~~~~FR~llr~IK~WAK~RGIysn~~G~L 241 (677)
... + .-.++-+-.+ ..| -|.++.||++||+-=|-+|..
T Consensus 249 ~~~--~----------------------------~~al~~~TGs-~~~---n~~lR~~A~~~g~~l~~~gl~ 286 (575)
T 3b0x_A 249 PES--Y----------------------------GAGLQYLTGS-AAH---SIRLRALAQEKGLKLSEYGVF 286 (575)
T ss_dssp GGG--H----------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTCEEETTEEE
T ss_pred HHH--H----------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCCcchhhcc
Confidence 321 0 1122222222 223 377889999999877777754
No 27
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=73.69 E-value=6.2 Score=43.13 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=36.7
Q ss_pred CCeEEEEeccccccCcCCCCCeeEEeecCCc-cC-------chhhHHHHHHHHHHh
Q 005795 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSY-VS-------REEDFFFILHNILAE 136 (677)
Q Consensus 89 ~~~~I~~FGSy~lGv~~p~SDIDil~v~P~~-v~-------re~dFf~~l~~~L~~ 136 (677)
.+.-|..+|||+=|=-.++||||++++.+.. .+ ....||..+.+.+.+
T Consensus 153 ~~~aviamGk~Gr~EL~~~SDiDli~l~~~~~~~~~~~~~~~~~~~f~rla~~l~~ 208 (440)
T 1v4a_A 153 QPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIK 208 (440)
T ss_dssp CCCEEEECHHHHTTCCCSSCCEEEEEEECC--------CCSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccccccCcCCCCCcceEEEeCCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 4689999999999999999999999997643 11 113688888776664
No 28
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=62.40 E-value=18 Score=40.27 Aligned_cols=61 Identities=13% Similarity=0.209 Sum_probs=42.3
Q ss_pred HhhcCCCccc--cccCCeEEEEeccccccCcCCCCCeeEEeecCCccC---------chhhHHHHHHHHHHh
Q 005795 76 TRLRGYSDQM--VEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVS---------REEDFFFILHNILAE 136 (677)
Q Consensus 76 ~~~~g~~~~~--~~~~~~~I~~FGSy~lGv~~p~SDIDil~v~P~~v~---------re~dFf~~l~~~L~~ 136 (677)
+...|.+... ....+.-|.-+|+++=+=-.++||||++++.+.... ....||..+.+.+.+
T Consensus 218 ~~~~G~p~~~~~~~~~~~aviamGklGg~EL~~~SDiDlifv~~~~~~~~t~g~~~~~~~~~f~rlaq~li~ 289 (498)
T 3k7d_A 218 VARYGKPNHLNEREGRGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMH 289 (498)
T ss_dssp HHHHCCBGGGTTCSSCSEEEEEEHHHHTTCCCTTCCEEEEEEECCCTTCBBSSSSCCBHHHHHHHHHHHHHH
T ss_pred HHHcCCCcccccCCCCCEEEEeeccccccccCcccccceeeeecCcccccccccccchHHHHHHHHHHHHHH
Confidence 3445765211 123568999999999999999999999998864311 013688887776664
No 29
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=59.56 E-value=31 Score=32.78 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=43.1
Q ss_pred CCeEEEEeccccc---cCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCcc--ceEEEEecCcee
Q 005795 89 ANALIFTFGSYRL---GVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHV--PVMKFKFDGLSI 163 (677)
Q Consensus 89 ~~~~I~~FGSy~l---Gv~~p~SDIDil~v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~~ArV--PIIKf~~~GI~i 163 (677)
.+..-...|||++ |+-.+.-|||+++-. .=...+.++|.+.. ......-++... -...+.+.|+.|
T Consensus 32 ~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~~--------~da~~~~~~L~~~g-~~~~~~~~~~~~~~~f~~~~i~~v~V 102 (169)
T 2fcl_A 32 EXVNWVVTGSLSFALQGVPVEVHDIDIQTDE--------EGAYEIERIFSEFV-SXXVRFSSTEXICSHFGELIIDGIXV 102 (169)
T ss_dssp SSCCEEEEHHHHHHHTTCCCCCCSEEEEECH--------HHHHHHHHHTGGGE-EEEEEEEECSSEEEEEEEEEETTEEE
T ss_pred cCCCEEEeHHHHHHHcCCCCCCCccEEEecc--------cCHHHHHHHHHHHh-hcccCCCccccccceeeEEeeCCEEE
Confidence 4677788899987 555578899998821 22344667777531 112212222222 134566689999
Q ss_pred eEeee
Q 005795 164 DLLYA 168 (677)
Q Consensus 164 DLsfa 168 (677)
||...
T Consensus 103 Dlm~~ 107 (169)
T 2fcl_A 103 EIMGD 107 (169)
T ss_dssp EEEEE
T ss_pred Eeeec
Confidence 99954
No 30
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=51.78 E-value=19 Score=37.11 Aligned_cols=78 Identities=21% Similarity=0.059 Sum_probs=36.1
Q ss_pred eEEEEeccccccC--cCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEecc-------Ccc-ceEEEEe-c
Q 005795 91 ALIFTFGSYRLGV--HGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLD-------AHV-PVMKFKF-D 159 (677)
Q Consensus 91 ~~I~~FGSy~lGv--~~p~SDIDil~v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~~-------ArV-PIIKf~~-~ 159 (677)
--|+..||...+- .-.-||+|+++++... ..|... ...|.+...+-.++.-.+ ..- |..-+.+ +
T Consensus 24 ~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~----~~~~~~-~~wl~~fg~~l~~~~~e~~~~~~~~~~~~~~~l~lf~d 98 (294)
T 2pbe_A 24 RLVTLEGSRTNRNIPPDNFQDYDISYFVTDV----ESFKEN-DQWLEIFGKRIMMQKPEDMELFPPELGNWFSYIILFED 98 (294)
T ss_dssp EEEEEC------------CCCEEEEEEESCH----HHHHTC-SGGGGGGCCEEEEECTTSCSSSCCCSTTCEEEEEEETT
T ss_pred EEEEEecCCCCCCCCCCCcccceEEEEEcCc----hHhhhh-HHHHHHHhhHHhhccccccccCcccCCCceeEEEEecC
Confidence 3578889999855 7889999999998532 123221 112222222211221001 112 3333444 7
Q ss_pred CceeeEeeeecccc
Q 005795 160 GLSIDLLYASISRL 173 (677)
Q Consensus 160 GI~iDLsfa~l~~~ 173 (677)
|+.|||.|..+...
T Consensus 99 g~rIDl~~~~~~~l 112 (294)
T 2pbe_A 99 GNKLDLTLIPIREA 112 (294)
T ss_dssp SCEEEEEEEEGGGH
T ss_pred CcEEEEEEecHHHH
Confidence 99999999987543
No 31
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=50.18 E-value=23 Score=39.93 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=58.5
Q ss_pred EEEeccccccCcCCCCCeeEEeecCCccCchhhHHHHHHHHHHhccCCceEEEeccCccceEEEEecCceeeEeeeeccc
Q 005795 93 IFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISR 172 (677)
Q Consensus 93 I~~FGSy~lGv~~p~SDIDil~v~P~~v~re~dFf~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~ 172 (677)
+..-||||=|-.+-+ |||+++.. .. .. + |.+.+.|+ .-.+.++-+ ++ .|+.|||.++....
T Consensus 182 ~~~~Gs~RR~~e~~g-DiD~li~~-~~----~~----v---l~~~~~v~---~~g~~k~~~-~~--~~~~vDl~~~~~~~ 242 (578)
T 2w9m_A 182 PAPAGDVRRGLETVR-AAELTVTG-TP----DD----V---LARLPELT---VQGDGVLSG-DY--EGVPVEIACAPAEA 242 (578)
T ss_dssp CEECHHHHHTCSEES-SEEEEEES-CH----HH----H---HHHCTTCE---EC---CEEE-EE--TTEEEEEEEECTTT
T ss_pred CEEecccccCCCccC-CEEEEEec-Ch----HH----H---HhcCccce---ecCCceEEE-EE--CCEEEEEEEECHHH
Confidence 888999999987754 99999887 21 11 1 66667765 222334322 23 89999999886321
Q ss_pred cccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHH-HHHHHHHHHhCCCCCCCCCc
Q 005795 173 LVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTL-RCLKFWAKRRGVYSNVTGFL 241 (677)
Q Consensus 173 ~~~p~~l~l~~d~~L~~lDe~svrSLNG~Rvtd~Il~lVp~~~~FR~ll-r~IK~WAK~RGIysn~~G~L 241 (677)
. .-.++-+-. . -. |.++.||++||+-=|-+|..
T Consensus 243 ------~------------------------~~al~~~TG--~----~n~~~lr~~A~~~g~~l~~~gl~ 276 (578)
T 2w9m_A 243 ------R------------------------GALDLLRSG--E----HFAGQVQAAAQARGFTLTAGGLS 276 (578)
T ss_dssp ------H------------------------HHHHHHTSC--H----HHHHHHHHHHHTTTCEEETTEEE
T ss_pred ------H------------------------HHHHHHHhh--h----hHHHHHHHHHHHcCCCcChhhcc
Confidence 0 112222222 1 23 77889999999877777754
Done!