BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005798
(676 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H5G|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
Synthetase
pdb|2H5G|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
Synthetase
Length = 463
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/421 (48%), Positives = 278/421 (66%), Gaps = 8/421 (1%)
Query: 261 ARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLAL 320
AR R L L+ + R +I+ +AD L I + N+ D+ A E A L+ RL+L
Sbjct: 38 ARSGGRXLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA-EGRLAAPLLKRLSL 96
Query: 321 KPGKISSLAKSIR-ILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALV 379
K++SLA +R I A ++ +G++L+RT +A L LE+ + P+GVLL++FESRPD L
Sbjct: 97 STSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLP 156
Query: 380 QIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPXXXXX 439
Q+A+LAI SGNGLLLKGGKEA SN ILH + A+ ++ + LV +REE+
Sbjct: 157 QVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVNTREEVEDLCRL 216
Query: 440 XXXXXXXXPRGSNKLVSQIKESTK-IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDY 498
PRGS++LV I+++ K IPV GH++GICH YVD A++D +V D+K +Y
Sbjct: 217 DKXIDLIIPRGSSQLVRDIQKAAKGIPVXGHSEGICHXYVDSEASVDKVTRLVRDSKCEY 276
Query: 499 PAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPR-ASKLLQIP-ETRLFHHEY 556
PAACNA+ETLL+H+DL ++++ L+ E V + GP+ AS L P E + EY
Sbjct: 277 PAACNALETLLIHRDLLRTPLFDQIIDXLRVEQVKIHAGPKFASYLTFSPSEVKSLRTEY 336
Query: 557 NSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFC 616
+ +E+VD+V+ AIDHIH++GS+HTD IV ED+ AE FL VDSA VF NASTRF
Sbjct: 337 GDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFS 396
Query: 617 DGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVD--GDQGVV-YTHKNLA 673
DG RFGLGAEVGISTSRIHARGPVG+EGLLTT+W+LRG HVV + G + Y H+NL
Sbjct: 397 DGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSLKYLHENLP 456
Query: 674 L 674
+
Sbjct: 457 I 457
>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
Length = 468
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 174/452 (38%), Positives = 262/452 (57%), Gaps = 33/452 (7%)
Query: 255 REMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSL 314
+++A AR++ L+ + ++ R IL + DAL+AN I+ N+ D+A A+E G A SL
Sbjct: 17 QQIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSL 76
Query: 315 VSRLALKPG-KISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES 373
+ RL L G K + I+ +A++E+P+G++ EL DGL L + + P+GVLL++FES
Sbjct: 77 LKRLDLFKGDKFEVXLQGIKDVAELEDPVGKVKXARELDDGLTLYQVTAPVGVLLVIFES 136
Query: 374 RPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEK-----LIGLVT 428
RP+ + I +L+I+SGN +LKGGKE++ + K++ I E + L+
Sbjct: 137 RPEVIANITALSIKSGNAAILKGGKESVNTFREXAKIVNDTIAQFQSETGVPVGSVQLIE 196
Query: 429 SREEIPXXXXXXXXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAK 488
+R+++ PRGSN LV +IK++TKIPVLGHADGIC +Y+D+ A+L AK
Sbjct: 197 TRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTKIPVLGHADGICSIYLDEDADLIKAK 256
Query: 489 NIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEG----------------- 531
I +DAK +YPA CNA ETLL++ + E++ L EG
Sbjct: 257 RISLDAKTNYPAGCNAXETLLINPKFS---KWWEVLENLTLEGGVTIHATKDLKTAYFDK 313
Query: 532 ---VGLFGGPRASKLLQIPETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIV 588
+G K + E + F E+ S+ + V +AI HI+ H S HTD IV
Sbjct: 314 LNELGKLTEAIQCKTVDADEEQDFDKEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAIV 373
Query: 589 AEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 648
E++ AE F VDS+ V+ NASTRF DG R+G GAEVGISTS+IHARGPVG++GL++
Sbjct: 374 TENKANAEKFXKGVDSSGVYWNASTRFADGFRYGFGAEVGISTSKIHARGPVGLDGLVSY 433
Query: 649 RWILRGNGHVVDGDQGV----VYTHKNLALQS 676
++ +RG+G V G + HK+L +++
Sbjct: 434 QYQIRGDGQVASDYLGAGGNKAFVHKDLDIKT 465
>pdb|1O20|A Chain A, Crystal Structure Of Gamma-glutamyl Phosphate Reductase
(tm0293) From Thermotoga Maritima At 2.00 A Resolution
Length = 427
Score = 249 bits (635), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 142/409 (34%), Positives = 236/409 (57%), Gaps = 7/409 (1%)
Query: 256 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLV 315
E A RE+ L+ ++++ K + +A+ L+ I N DV A+E G +SLV
Sbjct: 18 EKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLV 77
Query: 316 SRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRP 375
RLAL +I K+ + +++P+G+++ DGL + + P+G + I++ESRP
Sbjct: 78 DRLALNDKRIDEXIKACETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESRP 137
Query: 376 DALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLV--TSREE 432
+ V+ LA++SGN +LL+GG +A+ SN + I A+ +T + E + + T R
Sbjct: 138 NVTVETTILALKSGNTILLRGGSDALNSNKAIVSAIREALKETEIPESSVEFIENTDRSL 197
Query: 433 IPXXXXXXXXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAKNIVI 492
+ PRG L+S ++++ +PVL G CH++VD+SA+L A ++I
Sbjct: 198 VLEXIRLREYLSLVIPRGGYGLISFVRDNATVPVLETGVGNCHIFVDESADLKKAVPVII 257
Query: 493 DAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ--IPETR 550
+AK P CNA E LLVH+ +A L +V EL+ GV + G + +++ +P T
Sbjct: 258 NAKTQRPGTCNAAEKLLVHEKIA-KEFLPVIVEELRKHGVEVRGCEKTREIVPDVVPATE 316
Query: 551 L-FHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFH 609
+ EY ++ +++V +V AI+HI ++ + H++ I+ E+ A+ F+ ++D+AAV+
Sbjct: 317 DDWPTEYLDLIIAIKVVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYV 376
Query: 610 NASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHV 658
NASTRF DG +FG GAE+GIST R HARGPVG+ L T ++++ G HV
Sbjct: 377 NASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRELTTYKFVVLGEYHV 425
>pdb|4GHK|A Chain A, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|B Chain B, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|C Chain C, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|D Chain D, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
Length = 444
Score = 238 bits (608), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 139/386 (36%), Positives = 217/386 (56%), Gaps = 12/386 (3%)
Query: 283 VADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI 342
VA A+E + +K N DVA A++ G + V RL L + ++ + +R +A + +PI
Sbjct: 57 VARAIERDAGALKAANARDVARAKDKGLDAAFVDRLTLSDKALKTMVEGLRQVATLPDPI 116
Query: 343 GQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMR 402
G++ G+ + + PLGV+ I++ESRP+ + A+L ++SGN +L+GG EA+
Sbjct: 117 GEMSNLKYRPSGIQVGQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALE 176
Query: 403 SNAILHKVITSAIPDT-VGEKLIGLVTS--REEIPXXXXXXXXXXXXXPRGSNKLVSQIK 459
SN L K+I + + + + + +V + R + PRG L+ ++
Sbjct: 177 SNTALAKLIGEGLAEAGLPQDTVQVVETADRAAVGRLITMTEYVDVIVPRGGKSLIERLI 236
Query: 460 ESTKIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGA 519
++P++ H DGICHVYVD A++ A + +AK CN METLLV + +A
Sbjct: 237 NEARVPMIKHLDGICHVYVDDRASVTKALTVCDNAKTHRYGTCNTMETLLVARGIA-PAV 295
Query: 520 LNELVVELQHEGVGLFGGPRASKLLQIP--------ETRLFHHEYNSMVCTVEIVDDVRA 571
L+ L + +GV L A +L+ + EY + V ++IVD + A
Sbjct: 296 LSPLGRLYREKGVELRVDADARAVLEAAGVGPLVDATDEDWRTEYLAPVLAIKIVDGIDA 355
Query: 572 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGIST 631
AI+HI+++GS HTD IV ED A FL +VDSA+V NASTRF DG FGLGAE+GIS
Sbjct: 356 AIEHINEYGSHHTDAIVTEDHDRAMRFLREVDSASVMVNASTRFADGFEFGLGAEIGISN 415
Query: 632 SRIHARGPVGVEGLLTTRWILRGNGH 657
++HARGPVG+EGL + ++++ G+G
Sbjct: 416 DKLHARGPVGLEGLTSLKYVVLGHGE 441
>pdb|2W21|A Chain A, Crystal Structure Of The Aminoacid Kinase Domain Of The
Glutamate 5 Kinase Of Escherichia Coli
Length = 259
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 116/243 (47%), Gaps = 19/243 (7%)
Query: 5 QLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSL 64
Q +L++ G I++V+SGA+ GR+ L Y +L P + AAVGQS L
Sbjct: 34 QCAQLHAAGHRIVIVTSGAIAAGREHLGYPEL----------PATIASKQLLAAVGQSRL 83
Query: 65 MALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRK 124
+ L++ LFS + Q+L+T +D D + DT+++LLD V+P+ NENDAV+T +
Sbjct: 84 IQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAE 143
Query: 125 APYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPP-SEPNSKLIHTYIRAKH 183
DND+ +D +GLY+ P S P ++LI
Sbjct: 144 IK-------VGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDD 196
Query: 184 QAEITFGDK-SRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSIIKVLEGKRVGTLFH 242
GD S +G GGM+ K+ GI +I +G I V+EG VGTLFH
Sbjct: 197 ALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFH 256
Query: 243 RDA 245
A
Sbjct: 257 AQA 259
>pdb|2J5V|A Chain A, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5V|B Chain B, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5T|H Chain H, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|A Chain A, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|B Chain B, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|C Chain C, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|D Chain D, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|E Chain E, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|F Chain F, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|G Chain G, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
Length = 367
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 116/243 (47%), Gaps = 19/243 (7%)
Query: 5 QLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSL 64
Q +L++ G I++V+SGA+ GR+ L Y +L P + AAVGQS L
Sbjct: 34 QCAQLHAAGHRIVIVTSGAIAAGREHLGYPEL----------PATIASKQLLAAVGQSRL 83
Query: 65 MALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRK 124
+ L++ LFS + Q+L+T +D D + DT+++LLD V+P+ NENDAV+T +
Sbjct: 84 IQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAE 143
Query: 125 APYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPP-SEPNSKLIHTYIRAKH 183
DND+ +D +GLY+ P S P ++LI
Sbjct: 144 IK-------VGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDD 196
Query: 184 QAEITFGDK-SRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSIIKVLEGKRVGTLFH 242
GD S +G GGM+ K+ GI +I +G I V+EG VGTLFH
Sbjct: 197 ALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFH 256
Query: 243 RDA 245
A
Sbjct: 257 AQA 259
>pdb|2AKO|A Chain A, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|B Chain B, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|C Chain C, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|D Chain D, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
Length = 251
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 114/237 (48%), Gaps = 29/237 (12%)
Query: 12 QGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTL 71
+ +E+ILV+S A+ G +L D+ + +N ++ + AA+GQ L+++Y+ L
Sbjct: 36 EKYEVILVTSAAISAGHTKL-----------DIDR-KNLINKQVLAAIGQPFLISVYNEL 83
Query: 72 FSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS 131
++ + Q+L+T DF K + + ++L ++PI NENDA + +
Sbjct: 84 LAKFNKLGGQILLTGKDFDSRKATKHAKNAIDXXINLGILPIINENDATAIEEI------ 137
Query: 132 GIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSE-PNSKLIH--TYIRAKH-QAEI 187
+F DNDS SD++G Y PSE ++K + T+I+ + QA I
Sbjct: 138 -VFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATI 196
Query: 188 TFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSIIK--VLEGKRV-GTLF 241
G S G GG+ K+ + SGF + S+ K +LE K++ GTLF
Sbjct: 197 KTG--SEHGTGGIVTKLKAAKFLLEHNKKXFLASGFDL-SVAKTFLLEDKQIGGTLF 250
>pdb|3SZA|A Chain A, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZA|B Chain B, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZB|A Chain A, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
pdb|3SZB|B Chain B, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
Length = 469
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 117/293 (39%), Gaps = 33/293 (11%)
Query: 263 ESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKP 322
E+ +R +A S R + L LEA + LI+ E E ++ A A K+ +
Sbjct: 22 EAVKRARAAFSSGRTRPLQFRIQQLEALQRLIQ-EQEQELVGALAADLHKNEWN------ 74
Query: 323 GKISSLAKSIRILADMEEPIGQILKRTELADGLILEKT-----------SCPLGVLLIV- 370
+ + + +L ++E I K E A +EKT S PLGV+L++
Sbjct: 75 ---AYYEEVVYVLEEIEY---MIQKLPEWAADEPVEKTPQTQQDELYIHSEPLGVVLVIG 128
Query: 371 -FESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTS 429
+ + +Q AI +GN ++LK + + ++L +I + + + G V
Sbjct: 129 TWNYPFNLTIQPMVGAIAAGNAVVLKPSELSENMASLLATIIPQYLDKDLYPVINGGVPE 188
Query: 430 REEIPXXXXXXXXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAKN 489
E+ G K++ PV G YVDK+ +LDVA
Sbjct: 189 TTEL--LKERFDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACR 246
Query: 490 IVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASK 542
+I + N+ +T + + C+ ++ +VE + + F G A K
Sbjct: 247 -----RIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFYGEDAKK 294
>pdb|1NRW|A Chain A, The Structure Of A Haloacid Dehalogenase-Like Hydrolase
From B. Subtilis
Length = 288
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 624 GAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQGVVYTHKNL 672
G EV +ST R H E L W++ NG V+ +G +Y H+ +
Sbjct: 37 GIEVVVSTGRAHFDVXSIFEPLGIKTWVISANGAVIHDPEGRLYHHETI 85
>pdb|1AD3|A Chain A, Class 3 Aldehyde Dehydrogenase Complex With Nicotinamide-
Adenine-Dinucleotide
pdb|1AD3|B Chain B, Class 3 Aldehyde Dehydrogenase Complex With Nicotinamide-
Adenine-Dinucleotide
Length = 452
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 15/222 (6%)
Query: 325 ISSLAKSIRILADM--EEPIGQILKRTELADGLILEKTSCPLGVLLIV--FESRPDALVQ 380
+ L +I+ L D +EP+ + R D L + S PLGV+L++ + + +Q
Sbjct: 67 LEELDTTIKELPDWAEDEPVAKT--RQTQQDDLYIH--SEPLGVVLVIGAWNYPFNLTIQ 122
Query: 381 IASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPXXXXXX 440
A+ +GN ++LK + + +L +I + + + G V E+
Sbjct: 123 PMVGAVAAGNAVILKPSEVSGHMADLLATLIPQYMDQNLYLVVKGGVPETTELLKERFDH 182
Query: 441 XXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA 500
G + + K T PV G YVDK +LDVA +I +
Sbjct: 183 IMYTGSTAVGKIVMAAAAKHLT--PVTLELGGKSPCYVDKDCDLDVACR-----RIAWGK 235
Query: 501 ACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASK 542
N+ +T + + C+ ++ +VE + + F G A +
Sbjct: 236 FMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKDFYGEDAKQ 277
>pdb|1VSY|C Chain C, Proteasome Activator Complex
pdb|1VSY|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|H Chain H, Proteasome Activator Complex
pdb|3L5Q|T Chain T, Proteasome Activator Complex
Length = 232
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 21/97 (21%)
Query: 547 PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSA----HTDCIV-AEDQKVAETFLCQ 601
PE RL+ EY A++ I G+A +D IV A ++KV T L Q
Sbjct: 2 PEGRLYQVEY---------------ALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQ 46
Query: 602 VDSAAVFHNASTRFCDG-ARFGLGAEVGISTSRIHAR 637
S + + + A AE+ I+T+RIHA+
Sbjct: 47 DTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQ 83
>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|B Chain B, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|P Chain P, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|B Chain B, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|P Chain P, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|C Chain C, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|C Chain C, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 258
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 21/97 (21%)
Query: 547 PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSA----HTDCIV-AEDQKVAETFLCQ 601
PE RL+ EY A++ I G+A +D IV A ++KV T L Q
Sbjct: 15 PEGRLYQVEY---------------ALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQ 59
Query: 602 VDSAAVFHNASTRFCDG-ARFGLGAEVGISTSRIHAR 637
S + + + A AE+ I+T+RIHA+
Sbjct: 60 DTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQ 96
>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 235
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 21/97 (21%)
Query: 547 PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSA----HTDCIV-AEDQKVAETFLCQ 601
PE RL+ EY A++ I G+A +D IV A ++KV T L Q
Sbjct: 5 PEGRLYQVEY---------------ALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQ 49
Query: 602 VDSAAVFHNASTRFCDG-ARFGLGAEVGISTSRIHAR 637
S + + + A AE+ I+T+RIHA+
Sbjct: 50 DTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQ 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,437,932
Number of Sequences: 62578
Number of extensions: 650722
Number of successful extensions: 1775
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1748
Number of HSP's gapped (non-prelim): 26
length of query: 676
length of database: 14,973,337
effective HSP length: 105
effective length of query: 571
effective length of database: 8,402,647
effective search space: 4797911437
effective search space used: 4797911437
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)