Query 005798
Match_columns 676
No_of_seqs 466 out of 2578
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 07:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o20_A Gamma-glutamyl phosphat 100.0 7.2E-85 2.4E-89 717.0 43.9 408 251-659 13-426 (427)
2 2wme_A BADH, betaine aldehyde 100.0 3.3E-83 1.1E-87 712.6 41.5 399 229-656 27-484 (490)
3 4ghk_A Gamma-glutamyl phosphat 100.0 2.3E-83 7.7E-88 708.5 39.0 408 251-659 25-443 (444)
4 1vlu_A Gamma-glutamyl phosphat 100.0 6.4E-81 2.2E-85 691.7 41.5 421 252-674 14-463 (468)
5 2h5g_A Delta 1-pyrroline-5-car 100.0 4.8E-80 1.6E-84 683.8 43.5 437 228-674 11-457 (463)
6 3ek1_A Aldehyde dehydrogenase; 100.0 5.3E-80 1.8E-84 689.7 42.4 399 229-656 53-503 (504)
7 3ifg_A Succinate-semialdehyde 100.0 1E-79 3.6E-84 685.3 41.7 397 229-654 33-483 (484)
8 3rh9_A Succinate-semialdehyde 100.0 9.7E-80 3.3E-84 687.9 37.9 412 229-670 32-502 (506)
9 3prl_A NADP-dependent glyceral 100.0 3.1E-79 1.1E-83 684.3 42.0 401 229-656 32-484 (505)
10 3r31_A BADH, betaine aldehyde 100.0 4E-79 1.4E-83 684.6 41.5 398 229-659 35-492 (517)
11 3ros_A NAD-dependent aldehyde 100.0 3.4E-79 1.2E-83 680.6 40.5 396 230-656 10-459 (484)
12 4f3x_A Putative aldehyde dehyd 100.0 5.2E-79 1.8E-83 681.4 41.3 399 229-655 45-497 (498)
13 1a4s_A ALDH, betaine aldehyde 100.0 1.8E-78 6.1E-83 678.4 43.8 398 229-657 41-498 (503)
14 3ed6_A Betaine aldehyde dehydr 100.0 6.4E-79 2.2E-83 683.4 40.1 399 229-656 53-511 (520)
15 3pqa_A Lactaldehyde dehydrogen 100.0 8E-79 2.7E-83 677.9 39.7 414 229-670 17-482 (486)
16 3u4j_A NAD-dependent aldehyde 100.0 1.3E-78 4.5E-83 682.0 41.9 402 229-659 43-502 (528)
17 3k2w_A Betaine-aldehyde dehydr 100.0 2E-78 6.9E-83 677.6 41.2 399 229-656 33-489 (497)
18 4e4g_A Methylmalonate-semialde 100.0 1.1E-78 3.7E-83 681.7 38.7 401 229-656 47-506 (521)
19 1o04_A Aldehyde dehydrogenase, 100.0 4E-78 1.4E-82 674.5 41.2 397 230-655 41-495 (500)
20 3iwj_A Putative aminoaldehyde 100.0 3.9E-78 1.3E-82 676.2 40.6 401 229-656 28-490 (503)
21 1wnd_A Putative betaine aldehy 100.0 7.7E-78 2.6E-82 671.4 42.2 398 229-654 43-494 (495)
22 2o2p_A Formyltetrahydrofolate 100.0 2.2E-78 7.6E-83 678.5 37.9 400 229-654 57-516 (517)
23 3jz4_A Succinate-semialdehyde 100.0 8.3E-78 2.8E-82 671.0 42.2 397 229-654 30-480 (481)
24 3qan_A 1-pyrroline-5-carboxyla 100.0 8.3E-78 2.9E-82 677.0 41.5 401 228-657 55-518 (538)
25 3b4w_A Aldehyde dehydrogenase; 100.0 6.3E-78 2.2E-82 672.7 39.7 397 229-655 29-482 (495)
26 1bxs_A Aldehyde dehydrogenase; 100.0 6.8E-78 2.3E-82 672.8 40.0 397 230-655 42-496 (501)
27 3lns_A Benzaldehyde dehydrogen 100.0 1.9E-77 6.5E-82 664.0 41.7 404 226-654 8-456 (457)
28 2d4e_A 5-carboxymethyl-2-hydro 100.0 1.5E-77 5E-82 672.8 41.0 398 229-655 47-505 (515)
29 2w8n_A Succinate-semialdehyde 100.0 3.5E-77 1.2E-81 665.9 43.0 397 229-654 31-485 (487)
30 2j6l_A Aldehyde dehydrogenase 100.0 3.4E-77 1.2E-81 668.1 42.9 401 229-654 42-498 (500)
31 2imp_A Lactaldehyde dehydrogen 100.0 6.9E-77 2.3E-81 663.3 44.2 397 229-654 27-478 (479)
32 1uxt_A Glyceraldehyde-3-phosph 100.0 3.1E-77 1.1E-81 668.1 41.1 400 229-655 37-492 (501)
33 2ve5_A BADH, betaine aldehyde 100.0 6.1E-77 2.1E-81 665.9 41.9 399 229-656 27-484 (490)
34 3i44_A Aldehyde dehydrogenase; 100.0 2.5E-77 8.7E-82 667.6 37.8 394 229-653 46-496 (497)
35 3sza_A Aldehyde dehydrogenase, 100.0 1E-76 3.5E-81 658.7 41.3 386 251-656 17-449 (469)
36 1euh_A NADP dependent non phos 100.0 9.5E-77 3.2E-81 661.5 40.9 397 229-654 23-473 (475)
37 3etf_A Putative succinate-semi 100.0 8.6E-77 2.9E-81 660.5 40.4 395 230-654 13-460 (462)
38 1uzb_A 1-pyrroline-5-carboxyla 100.0 2E-76 6.8E-81 664.3 43.6 399 229-654 56-515 (516)
39 3r64_A NAD dependent benzaldeh 100.0 9.7E-77 3.3E-81 665.6 40.2 401 229-657 33-487 (508)
40 4h7n_A Aldehyde dehydrogenase; 100.0 5.8E-77 2E-81 663.0 38.0 398 229-656 11-464 (474)
41 4dng_A Uncharacterized aldehyd 100.0 1.1E-76 3.6E-81 663.2 40.0 400 229-656 27-479 (485)
42 1t90_A MMSDH, probable methylm 100.0 7.8E-76 2.7E-80 655.4 37.9 399 229-655 26-480 (486)
43 3ty7_A Putative aldehyde dehyd 100.0 1.4E-75 4.8E-80 653.0 35.8 391 229-653 28-475 (478)
44 1ez0_A ALDH, aldehyde dehydrog 100.0 4.3E-75 1.5E-79 653.1 35.3 401 230-652 13-480 (510)
45 3v4c_A Aldehyde dehydrogenase 100.0 4.8E-75 1.7E-79 655.3 34.0 403 228-652 44-515 (528)
46 3ju8_A Succinylglutamic semial 100.0 1.7E-73 5.8E-78 637.2 39.9 392 230-657 26-473 (490)
47 4f9i_A Proline dehydrogenase/d 100.0 2.3E-72 7.9E-77 666.5 42.6 400 229-656 550-1011(1026)
48 4e3x_A Delta-1-pyrroline-5-car 100.0 2.3E-72 7.9E-77 634.0 40.4 399 229-655 82-551 (563)
49 3haz_A Proline dehydrogenase; 100.0 4.8E-71 1.6E-75 653.9 39.5 384 251-656 549-988 (1001)
50 2y53_A Aldehyde dehydrogenase 100.0 8.9E-71 3E-75 621.4 38.6 396 229-655 27-519 (534)
51 3k9d_A LMO1179 protein, aldehy 100.0 3E-69 1E-73 599.4 36.9 385 251-659 11-453 (464)
52 3my7_A Alcohol dehydrogenase/a 100.0 9.2E-67 3.1E-71 577.6 34.2 381 251-655 6-449 (452)
53 2j5v_A Glutamate 5-kinase; pro 100.0 1.4E-37 4.9E-42 332.6 19.6 225 2-244 31-258 (367)
54 2ako_A Glutamate 5-kinase; str 100.0 2.3E-35 8E-40 301.8 19.1 220 2-242 27-251 (251)
55 2rd5_A Acetylglutamate kinase- 100.0 1E-30 3.4E-35 273.6 20.0 222 2-243 57-298 (298)
56 2v5h_A Acetylglutamate kinase; 100.0 3.5E-30 1.2E-34 271.5 20.7 223 2-244 70-311 (321)
57 2ap9_A NAG kinase, acetylgluta 100.0 7E-30 2.4E-34 267.5 22.0 220 2-244 46-291 (299)
58 2egx_A Putative acetylglutamat 100.0 4.4E-30 1.5E-34 265.0 18.5 221 2-242 17-269 (269)
59 3ll9_A Isopentenyl phosphate k 100.0 3.4E-30 1.1E-34 265.3 14.8 220 2-242 32-266 (269)
60 2e9y_A Carbamate kinase; trans 100.0 2.1E-29 7.1E-34 265.4 20.5 220 2-243 35-315 (316)
61 3d40_A FOMA protein; fosfomyci 100.0 2.8E-30 9.7E-35 268.2 13.3 220 2-244 52-283 (286)
62 3l86_A Acetylglutamate kinase; 100.0 3.3E-29 1.1E-33 257.5 20.7 196 2-224 55-271 (279)
63 3kzf_A Carbamate kinase; argin 100.0 7.9E-29 2.7E-33 254.9 20.9 220 2-244 36-317 (317)
64 2buf_A Acetylglutamate kinase; 100.0 8.7E-29 3E-33 259.1 21.0 220 2-244 47-297 (300)
65 2bty_A Acetylglutamate kinase; 100.0 8.7E-29 3E-33 257.2 20.1 219 2-244 42-280 (282)
66 4axs_A Carbamate kinase; oxido 100.0 1E-28 3.4E-33 258.9 19.8 226 2-243 50-332 (332)
67 2j4j_A Uridylate kinase; trans 100.0 6.1E-28 2.1E-32 242.8 17.8 195 2-243 23-225 (226)
68 3nwy_A Uridylate kinase; allos 100.0 3.6E-28 1.2E-32 249.8 16.3 199 2-242 77-280 (281)
69 2we5_A Carbamate kinase 1; arg 100.0 1.1E-27 3.7E-32 251.9 18.5 224 2-242 31-309 (310)
70 3ll5_A Gamma-glutamyl kinase r 100.0 3.6E-28 1.2E-32 247.5 14.2 212 4-241 30-248 (249)
71 3k4o_A Isopentenyl phosphate k 100.0 6.2E-28 2.1E-32 247.7 15.9 215 2-244 35-265 (266)
72 4a7w_A Uridylate kinase; trans 99.9 4.2E-27 1.4E-31 238.2 18.5 202 2-241 35-239 (240)
73 2va1_A Uridylate kinase; UMPK, 99.9 3E-27 1E-31 242.0 17.2 198 2-242 52-255 (256)
74 1ybd_A Uridylate kinase; alpha 99.9 8.8E-27 3E-31 236.4 20.1 200 2-243 35-239 (239)
75 1e19_A Carbamate kinase-like c 99.9 8.6E-27 3E-31 245.0 20.2 224 2-243 33-314 (314)
76 1z9d_A Uridylate kinase, UK, U 99.9 1E-26 3.5E-31 237.6 18.7 201 2-244 35-241 (252)
77 3d2m_A Putative acetylglutamat 99.9 2.7E-26 9.1E-31 254.8 22.0 216 2-244 63-304 (456)
78 2ogx_B Molybdenum storage prot 99.9 7.4E-27 2.5E-31 240.8 15.9 208 2-243 59-269 (270)
79 2a1f_A Uridylate kinase; PYRH, 99.9 1.8E-26 6.2E-31 235.1 17.4 201 2-244 36-241 (247)
80 3zzh_A Acetylglutamate kinase; 99.9 2E-26 6.9E-31 239.4 17.9 217 2-244 67-302 (307)
81 3ek6_A Uridylate kinase; UMPK 99.9 2.8E-26 9.5E-31 232.5 18.0 201 2-243 37-241 (243)
82 2ogx_A Molybdenum storage prot 99.9 3E-26 1E-30 236.7 15.9 206 2-244 61-272 (276)
83 2brx_A Uridylate kinase; UMP k 99.9 1.7E-26 5.8E-31 234.6 13.7 193 2-242 44-243 (244)
84 1gs5_A Acetylglutamate kinase; 99.9 9E-26 3.1E-30 231.5 17.0 217 2-242 23-257 (258)
85 2ij9_A Uridylate kinase; struc 99.9 7.9E-26 2.7E-30 226.3 15.3 191 2-242 22-219 (219)
86 3s6g_A N-acetylglutamate kinas 99.9 1.9E-25 6.5E-30 244.1 18.1 220 2-244 77-311 (460)
87 4ab7_A Protein Arg5,6, mitocho 99.9 2E-25 6.8E-30 243.3 17.0 217 2-244 67-302 (464)
88 2jjx_A Uridylate kinase, UMP k 99.9 1.1E-24 3.7E-29 222.9 18.3 202 2-244 40-247 (255)
89 3s6k_A Acetylglutamate kinase; 99.9 2.4E-25 8.1E-30 243.5 9.3 222 2-244 80-314 (467)
90 3l76_A Aspartokinase; alloster 99.9 4.8E-24 1.6E-28 242.1 13.8 210 2-244 22-245 (600)
91 3ab4_A Aspartokinase; aspartat 99.9 9.6E-24 3.3E-28 231.0 14.8 215 2-244 22-244 (421)
92 2cdq_A Aspartokinase; aspartat 99.8 2.8E-20 9.7E-25 206.5 17.3 166 53-244 140-324 (510)
93 2j0w_A Lysine-sensitive aspart 99.8 3.5E-20 1.2E-24 203.5 13.1 169 52-244 110-292 (449)
94 3c1m_A Probable aspartokinase; 99.8 1.5E-19 5E-24 200.4 17.4 171 53-244 122-301 (473)
95 3tvi_A Aspartokinase; structur 99.8 1.1E-18 3.7E-23 190.7 10.7 170 53-244 109-279 (446)
96 4gic_A HDH, histidinol dehydro 97.2 0.32 1.1E-05 51.5 30.6 284 324-652 93-400 (423)
97 1kae_A HDH, histidinol dehydro 96.0 2 6.8E-05 45.6 28.3 284 324-653 87-394 (434)
98 2fiu_A Conserved hypothetical 45.9 42 0.0014 27.8 6.2 69 502-581 2-76 (99)
99 3fgh_A Transcription factor A, 30.0 1.1E+02 0.0036 22.9 5.8 37 259-295 28-64 (67)
100 3rag_A Uncharacterized protein 28.4 2.3E+02 0.008 27.5 9.2 79 204-289 28-132 (242)
101 2eqz_A High mobility group pro 22.9 1.5E+02 0.0052 23.4 5.7 36 260-295 48-83 (86)
102 3v42_A Folliculin; tumor suppr 22.7 99 0.0034 29.8 5.2 70 379-458 21-90 (226)
103 3ewi_A N-acylneuraminate cytid 22.3 98 0.0033 28.1 5.0 57 154-233 11-69 (168)
104 2ec4_A FAS-associated factor 1 20.3 21 0.00072 33.2 -0.1 49 554-602 25-77 (178)
No 1
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=100.00 E-value=7.2e-85 Score=717.03 Aligned_cols=408 Identities=35% Similarity=0.617 Sum_probs=370.4
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChHHHHHHHH
Q 005798 251 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 330 (676)
Q Consensus 251 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 330 (676)
-+++++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|+++++++|+.++..+++.....|+..+++
T Consensus 13 ~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~g~~ea~~~~~~~~~~ev~~~~~ 92 (427)
T 1o20_A 13 MDELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMIK 92 (427)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccccccccHHHHHHHhcCHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999988777777776777777789999999
Q ss_pred HHHHHhcccccccccccccccCCCcEEEEEeeceeEEEEEcCCChhhHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHHH
Q 005798 331 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKV 410 (676)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~l 410 (676)
.++++++++++.+...+....+.+...+++++|+|||++|+||||.+.+++++|||++||+||+||||.||+|+..++++
T Consensus 93 ~l~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~p~~~~~~~~~~ALaaGNtVVlKps~~tp~t~~~l~~l 172 (427)
T 1o20_A 93 ACETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESRPNVTVETTILALKSGNTILLRGGSDALNSNKAIVSA 172 (427)
T ss_dssp HHHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECCCEEEECCSCTHHHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHH
T ss_pred HHHHHHhcccccCccccccccCCCceeEEEeecceeEEEEecCChHHHHHHHHHHHHcCCEEEEECCHhHHHHHHHHHHH
Confidence 99999976655554433211123445688899999999999998888899999999999999999999999999999999
Q ss_pred HHHhcccc-cCcCceEEecC-C-ChhhhhhcCCCCccEEEeecCHHHHHHHHHhcCCCEEeecCCcceEEEcCCCCHHHH
Q 005798 411 ITSAIPDT-VGEKLIGLVTS-R-EEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVA 487 (676)
Q Consensus 411 ~~~al~~a-lP~gv~~~v~~-~-~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~~~~~lElGGk~p~iV~~dADl~~A 487 (676)
+.++|.++ +|+|++|+|+| + ++++++|..||+||+|+||||+++|+.|++++.||+++|||||||+||++|||+|.|
T Consensus 173 ~~~al~eaGlP~gvv~vv~g~~~~~~~~~L~~~~~v~~I~fTGS~~~G~~i~~~a~~~v~lELGGk~p~iV~~dADl~~A 252 (427)
T 1o20_A 173 IREALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLISFVRDNATVPVLETGVGNCHIFVDESADLKKA 252 (427)
T ss_dssp HHHHHTTSSSCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCSSCBCCCCCCCEEEEECTTSCHHHH
T ss_pred HHHHHHHcCCCcccEEEecCCChHHHHHHHhCCCCccEEEeCCChHHHHHHHHhcCCCEEEecCCCceEEEeCCCCHHHH
Confidence 99988889 99999999996 3 467899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccccccceEEEeCccCChhHHHHHHHHHHhcCcEEecCcccccccc-C--CCCCcccccccCceEEEE
Q 005798 488 KNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ-I--PETRLFHHEYNSMVCTVE 564 (676)
Q Consensus 488 ~~~iv~~~~~n~g~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~~~g~~~~~~~~p-v--~~~~~~~eE~FGPVl~i~ 564 (676)
++.+++++|.|+|.|+|++|+|||+++| |+|+++|+++++++++.+.|+++..+++| | +++++++||+||||++|+
T Consensus 253 a~~i~~~~f~n~G~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~~~~gg~~~~~~~Ptl~~~~~~i~~eEiFGPVl~v~ 331 (427)
T 1o20_A 253 VPVIINAKTQRPGTCNAAEKLLVHEKIA-KEFLPVIVEELRKHGVEVRGCEKTREIVPDVVPATEDDWPTEYLDLIIAIK 331 (427)
T ss_dssp HHHHHHHHHSCTTSTTSEEEEEEEHHHH-HHHHHHHHHHHHHTTCEEEECHHHHHHSTTSEECCGGGTTCCCCSSEEEEE
T ss_pred HHHHHHHhccCCCCCCCccEEEEehhhH-HHHHHHHHHHHHHcCCeeecChhhhhhCCcccCCCcchhhcccccceEEEE
Confidence 9999999999989999999999999999 79999999999999988877764344667 5 578899999999999999
Q ss_pred EeCCHHHHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhc
Q 005798 565 IVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEG 644 (676)
Q Consensus 565 ~~~~~deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ 644 (676)
+|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+..||||+++||+|+|+++++|++|+++
T Consensus 332 ~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~V~iN~~~~~~~~~pfGg~~~SG~g~~~~~~~g~~gl~~ 411 (427)
T 1o20_A 332 VVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRE 411 (427)
T ss_dssp EESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCSTTTTTCSCCSCEECSSSSCCEECCTGG
T ss_pred EECCHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHhCCccEEEECCCCccCCCCCCCCcccccccCCcccCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999876677889999999999877767789999999
Q ss_pred ceeEEEEEEcCceee
Q 005798 645 LLTTRWILRGNGHVV 659 (676)
Q Consensus 645 ft~~k~v~~~~~~~~ 659 (676)
|++.|+|.++.++.|
T Consensus 412 ~~~~k~v~~~~~~~~ 426 (427)
T 1o20_A 412 LTTYKFVVLGEYHVR 426 (427)
T ss_dssp GEEEEEEEECSSCCC
T ss_pred HhceEEEEECCCccC
Confidence 999999999988876
No 2
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=100.00 E-value=3.3e-83 Score=712.58 Aligned_cols=399 Identities=16% Similarity=0.193 Sum_probs=348.1
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++..++ .+|+++|+++|++||+.|+++|..+|.++|++++++|++|+++|+++++.|++++.
T Consensus 27 ~nP~tg~~i~~v~~a~------~~dv~~Av~aA~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 98 (490)
T 2wme_A 27 INPANGEVLAKVQRAS------REDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPL-- 98 (490)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred eCCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 4578899999998888 88999999999999999999999999999999999999999999999887765432
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhcccccc-cccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
.++. ..++...++.++++++..+.. +...+. ..+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 99 --~ea~-------~~~v~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~a~A 166 (490)
T 2wme_A 99 --AETR-------SVDIVTGADVLEYYAGLVPAIEGEQIPL---RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPA 166 (490)
T ss_dssp --HHHT-------TTHHHHHHHHHHHHHHHGGGCCEEEEEE---ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHHH-------HHHHHHHHHHHHHHHhccccccCccccc---cCCcceeEEecceeEEEEeccccCcchhhhhhHHHH
Confidence 1221 135777788888888765432 333322 2455678899999999999999 585 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 462 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a- 462 (676)
|++||+||+||||.||+|+.++++++.+ + +|+|+||+|+| ++++++.|..||+||+|+||||+++|+++++.+
T Consensus 167 LaaGNtVVlKPse~tp~ta~~l~~l~~e----aGlP~gv~~vv~g~g~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~~~a 242 (490)
T 2wme_A 167 LAAGNAMIFKPSEVTPLTALKLAEIYTE----AGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASAS 242 (490)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCeEEEECCcCCHHHHHHHHHHHHH----hCCCCCcEEEEeCChHHHHHHHHhCCCCCEEEEECChHHHHHHHHhhh
Confidence 9999999999999999999999999987 7 99999999996 678999999999999999999999999887643
Q ss_pred ---CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcCc------
Q 005798 463 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 532 (676)
Q Consensus 463 ---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------ 532 (676)
.||++||||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 243 ~~~lk~v~lELGGk~p~iV~~dAdl~~A~~~~~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~l~vGdp~~~ 321 (490)
T 2wme_A 243 SSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQ-ARFEAKVLERVQRIRLGDPQDE 321 (490)
T ss_dssp HHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred ccCCceEEEEcCCcCeEEEccCccHHHHHHHHHHHHhccCCCcCCCceeeccchhHH-HHHHHHHHHHHHhCcCCCCccc
Confidence 49999999999999999999999999999999999987 999999999999999 7999999999887532
Q ss_pred ----------------------------EE-ecCccc------cccc--c-C-----CCCCcccccccCceEEEEEeCCH
Q 005798 533 ----------------------------GL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 569 (676)
Q Consensus 533 ----------------------------~~-~g~~~~------~~~~--p-v-----~~~~~~~eE~FGPVl~i~~~~~~ 569 (676)
++ .|+.+. .++| | | ++|++++||+||||++|++|+|+
T Consensus 322 ~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~G~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 401 (490)
T 2wme_A 322 NTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDE 401 (490)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESCH
T ss_pred cCccCCcCCHHHHHHHHHHHHHHHhcCCEEEECCcccCcccccCCCccCCEEEEcCCCCChhhhccccCCEEEEEEeCCH
Confidence 22 244321 1233 5 2 46899999999999999999999
Q ss_pred HHHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEE
Q 005798 570 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 649 (676)
Q Consensus 570 deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k 649 (676)
||||+++|+++|||++||||+|.++++++++++++|+|+||+.....+.+||||.|.||+| +++|++|+++||+.|
T Consensus 402 deAi~~aN~~~yGL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PFGG~k~SG~G----re~G~~gl~~ft~~K 477 (490)
T 2wme_A 402 DEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVG----RENGLTTLAHYTRIK 477 (490)
T ss_dssp HHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEES----CBSHHHHHHTTEEEE
T ss_pred HHHHHHHhcCCCCCeEEEEcCCHHHHHHHHHHCCeeEEEEeCCCCCCCCCCcccccccccC----chhHHHHHHHhhcee
Confidence 9999999999999999999999999999999999999999998777788999999999986 367999999999999
Q ss_pred EEEEcCc
Q 005798 650 WILRGNG 656 (676)
Q Consensus 650 ~v~~~~~ 656 (676)
+|+++.+
T Consensus 478 ~v~i~~g 484 (490)
T 2wme_A 478 SVQVELG 484 (490)
T ss_dssp EEEEECS
T ss_pred EEEEECC
Confidence 9999775
No 3
>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}
Probab=100.00 E-value=2.3e-83 Score=708.52 Aligned_cols=408 Identities=36% Similarity=0.618 Sum_probs=350.9
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChHHHHHHHH
Q 005798 251 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 330 (676)
Q Consensus 251 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 330 (676)
.+++++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++.+|+++++++|+.++..+++..+..++..+++
T Consensus 25 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~gk~~~~g~~ea~~~~~~~~~~~v~~~~~ 104 (444)
T 4ghk_A 25 DQYMTDVGRRARRASRSIARASTAAKNAALEAVARAIERDAGALKAANARDVARAKDKGLDAAFVDRLTLSDKALKTMVE 104 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC------CCSHHHHHCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhccchHHHHHHhhccHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999988776655666666677777778999999
Q ss_pred HHHHHhcccccccccccccccCCCcEEEEEeeceeEEEEEcCCChhhHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHHH
Q 005798 331 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKV 410 (676)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~l 410 (676)
.+++++.+.++.+...+......+...+++++|+|||++|+||||.+.+++++|||++||+||+||||.||+|+..++++
T Consensus 105 ~l~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~nP~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l 184 (444)
T 4ghk_A 105 GLRQVATLPDPIGEMSNLKYRPSGIQVGQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALESNTALAKL 184 (444)
T ss_dssp HHHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECSEEEEECCSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHH
T ss_pred HHHHHHhhccccCccCCcccCCCCccceEEEeccEEEEEEeCCCcHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHH
Confidence 99999877665555443221123556788999999999999999977789999999999999999999999999999999
Q ss_pred HHHhcccc-cCcCceEEecC-CC-hhhhhhcCCCCccEEEeecCHHHHHHHHHhcCCCEEeecCCcceEEEcCCCCHHHH
Q 005798 411 ITSAIPDT-VGEKLIGLVTS-RE-EIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVA 487 (676)
Q Consensus 411 ~~~al~~a-lP~gv~~~v~~-~~-~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~~~~~lElGGk~p~iV~~dADl~~A 487 (676)
+.++|.++ +|+|+||+|+| +. .++++|..||+||+|+||||+.+|+.|++.+.||+++|||||||+||++|||+|.|
T Consensus 185 ~~~~l~~aGlP~gvv~vv~g~~~~~~~~~L~~~p~vd~V~fTGs~~vg~~v~~~a~~pv~lELGGk~p~IV~~dADl~~A 264 (444)
T 4ghk_A 185 IGEGLAEAGLPQDTVQVVETADRAAVGRLITMTEYVDVIVPRGGKSLIERLINEARVPMIKHLDGICHVYVDDRASVTKA 264 (444)
T ss_dssp HHHHHHHTTCCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCCSCBCCCCCCCCEEEECTTCCHHHH
T ss_pred HHHHHHHcCCCcccEEEEeCCCHHHHHHHHhcCCCccEEEEECcHHHHHHHHHhCCCCEEEEcCCcCeEEECCCCCHHHH
Confidence 98887789 99999999995 44 58899999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHhcCCCCccccccceEEEeCccCChhHHHHHHHHHHhcCcEEecCcccccccc-------C-CCCCcccccccCc
Q 005798 488 KNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ-------I-PETRLFHHEYNSM 559 (676)
Q Consensus 488 ~~~iv~~~~~n~g~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~~~g~~~~~~~~p-------v-~~~~~~~eE~FGP 559 (676)
++.+++|+|.|+|+|+|++|+|||+++| |+|+++|+++++++++.+.|++....++. + +++++++||+|||
T Consensus 265 a~~i~~~~~~n~G~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~~~~g~p~~~~~i~~a~~G~~~~~~~~~~~eEiFGP 343 (444)
T 4ghk_A 265 LTVCDNAKTHRYGTCNTMETLLVARGIA-PAVLSPLGRLYREKGVELRVDADARAVLEAAGVGPLVDATDEDWRTEYLAP 343 (444)
T ss_dssp HHHCC---------CCCCCEEEEEGGGH-HHHHHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCCEECCSGGGTCC---C
T ss_pred HHHHHHHhcCCCcccCcCceEEEeHHHH-HHHHHHHHHHHHHcCCeecCCHHHHHHHHhcccCcccCCCchhhhccccCc
Confidence 9999999999988999999999999999 79999999999998876556554322221 1 4688999999999
Q ss_pred eEEEEEeCCHHHHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccc
Q 005798 560 VCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGP 639 (676)
Q Consensus 560 Vl~i~~~~~~deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~ 639 (676)
|++|++|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||+++.+.+..|||++++||+|+++.+++|+
T Consensus 344 Vl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~pfGg~~~sG~g~~~~~~~G~ 423 (444)
T 4ghk_A 344 VLAIKIVDGIDAAIEHINEYGSHHTDAIVTEDHDRAMRFLREVDSASVMVNASTRFADGFEFGLGAEIGISNDKLHARGP 423 (444)
T ss_dssp EEEEEEESSHHHHHHHHHHHSCSSEEEEECSBHHHHHHHHHHCCSSEEEEEECGGGCSTTTTTCSCCSEEECCSSSCCEE
T ss_pred eEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHhCCcceEEEcCCCccCCCCCcCCcccccccCCcccCCCh
Confidence 99999999999999999999999999999999999999999999999999998877788999999999998777678899
Q ss_pred cchhcceeEEEEEEcCceee
Q 005798 640 VGVEGLLTTRWILRGNGHVV 659 (676)
Q Consensus 640 ~g~~~ft~~k~v~~~~~~~~ 659 (676)
+|+++||+.|+|+++.+++|
T Consensus 424 ~gl~~~t~~K~v~~~~~~~~ 443 (444)
T 4ghk_A 424 VGLEGLTSLKYVVLGHGEGR 443 (444)
T ss_dssp ECGGGGEEEEEEEEEEEECC
T ss_pred hHHHhhceEEEEEECCCccc
Confidence 99999999999999988876
No 4
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=100.00 E-value=6.4e-81 Score=691.69 Aligned_cols=421 Identities=43% Similarity=0.718 Sum_probs=328.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhhchhHHHHHHhhc-ChHHHHHHHH
Q 005798 252 VGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLAL-KPGKISSLAK 330 (676)
Q Consensus 252 ~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~ 330 (676)
..+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++.++|+.++...++.. +..+++++++
T Consensus 14 ~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~g~~ea~~~ev~~~~~~~~~~~a~ 93 (468)
T 1vlu_A 14 SSSQQIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGDKFEVMLQ 93 (468)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCCHHHHHHHCTTSTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccchHHHHHHhhhhHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999999999988766666765567777 7788999999
Q ss_pred HHHHHhcccccccccccccccCCCcEEEEEeeceeEEEEEcCCChhhHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHHH
Q 005798 331 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKV 410 (676)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~l 410 (676)
.++.+....++.|...+....+.+...+++++|+|||++|+||||.+.+++++|||++||+||+||||.||+|+..++++
T Consensus 94 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~pwNP~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l 173 (468)
T 1vlu_A 94 GIKDVAELEDPVGKVKMARELDDGLTLYQVTAPVGVLLVIFESRPEVIANITALSIKSGNAAILKGGKESVNTFREMAKI 173 (468)
T ss_dssp HHHHHHHSCCSSSCEEEEEEEETTEEEEEEEEECCEEEEEESSCTHHHHHHHHHHHHHTCEEEEECCGGGHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCeecccccCCCCceeEEEecCcceEEEEeccChHHHHHHHHHHHHcCCEEEEEcCCccHHHHHHHHHH
Confidence 99988765554454433111112455688999999999999999966789999999999999999999999999999999
Q ss_pred HHHhccc----c-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHHhcCCCEEeecCCcceEEEcCCCCHH
Q 005798 411 ITSAIPD----T-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLD 485 (676)
Q Consensus 411 ~~~al~~----a-lP~gv~~~v~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~~~~~lElGGk~p~iV~~dADl~ 485 (676)
+.++|.+ + +|+|+||+|++++++++.|..||+||+|+||||+++|+.|++.+.||+++|||||||+||++|||+|
T Consensus 174 ~~~aL~e~~~~aGlP~gvv~vv~~~~~~g~~L~~~p~vd~I~fTGS~~~g~~i~~~a~kpv~lElGGk~p~iV~~dADl~ 253 (468)
T 1vlu_A 174 VNDTIAQFQSETGVPVGSVQLIETRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTKIPVLGHADGICSIYLDEDADLI 253 (468)
T ss_dssp HHHHHHHHHHHHCCCTTSEEECCCC--CGGGGGCTTTCCEEEEESCHHHHHHHHHTCCSCBTTBCSCCEEEEECTTCCHH
T ss_pred HHHHHHhhchhcCCCCCcEEEECCHHHHHHHHhhCCCcCEEEEECCHHHHHHHHHhcCCCEEeecCCccceEECCCCCHH
Confidence 9988888 9 9999999999434688999999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccccccceEEEeCccCChhHHHHHHHHHHhcCcEEecCccccc---------------ccc--C--
Q 005798 486 VAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASK---------------LLQ--I-- 546 (676)
Q Consensus 486 ~A~~~iv~~~~~n~g~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~~~g~~~~~~---------------~~p--v-- 546 (676)
.|++.+++++|.|+|.|+|++|+|||+++ | +|+++|+++++++++.+.|++.... +.| +
T Consensus 254 ~Aa~~i~~~~~~n~G~C~a~~rvlV~~~i-d-~f~~~l~~~~~~~~v~~~Gdp~~~~~~i~~a~~~~~gG~g~~Ptvlv~ 331 (468)
T 1vlu_A 254 KAKRISLDAKTNYPAGCNAMETLLINPKF-S-KWWEVLENLTLEGGVTIHATKDLKTAYFDKLNELGKLTEAIQCKTVDA 331 (468)
T ss_dssp HHHHHHHHTTCC----CCCCEEEEECTTS-T-THHHHHHHHHHHHCCCBEECHHHHHHHHHHHHHHTCCCHHHHTTBC--
T ss_pred HHHHHHHHHhcCCCCcCCcCcEEEEECCH-H-HHHHHHHHHHHhcCCeecCCHHHhcccccccceeeccCCCCCCceeeC
Confidence 99999999999998899999999999999 8 9999999999998765445542111 224 2
Q ss_pred CCCCcccccccCceEEEEEeCCHHHHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCccc
Q 005798 547 PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAE 626 (676)
Q Consensus 547 ~~~~~~~eE~FGPVl~i~~~~~~deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~ 626 (676)
+++++++||+||||++|++|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||+++...+..|||+|++
T Consensus 332 ~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~pfG~Gg~ 411 (468)
T 1vlu_A 332 DEEQDFDKEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAIVTENKANAEKFMKGVDSSGVYWNASTRFADGFRYGFGAE 411 (468)
T ss_dssp -----------CCCCEEEECCSHHHHHHHHTTSCSSCEEEEECSCHHHHHHHHHHCCCSEEEESSCGGGCC---------
T ss_pred CCchhhhcCccCceEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHhCCeeEEEEcCCCCCCCCCCCCCCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999877777889998878
Q ss_pred ccccccccccccccchhcceeEEEEEEcCceeecC----CCCceeeccccCC
Q 005798 627 VGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDG----DQGVVYTHKNLAL 674 (676)
Q Consensus 627 ~G~~~~~~~~~g~~g~~~ft~~k~v~~~~~~~~~~----~~~~~~~~~~~~~ 674 (676)
+|++.++.+..|++|+++|++.|+|.++.++.|+. .....|+|+.+++
T Consensus 412 ~G~~~SG~g~~G~~gl~~f~~~K~v~~~~~~~r~py~~~~~~~~~~~~~~~~ 463 (468)
T 1vlu_A 412 VGISTSKIHARGPVGLDGLVSYQYQIRGDGQVASDYLGAGGNKAFVHKDLDI 463 (468)
T ss_dssp -------------CCSGGGEEEEEEEECSSCCSCCC----------------
T ss_pred cceecCCCCCCcchHHHHhcceEEEEECCCCcCccccccccccceecCCCCc
Confidence 88876555444999999999999999998888842 2357999998764
No 5
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens}
Probab=100.00 E-value=4.8e-80 Score=683.79 Aligned_cols=437 Identities=47% Similarity=0.754 Sum_probs=348.0
Q ss_pred HHHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 005798 228 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 307 (676)
Q Consensus 228 i~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~ 307 (676)
..++.+|+.++++...+ .+++++++++|++||+.|+.+|.++|.++|++++++|++++++|++++.+|++.++
T Consensus 11 ~~~P~tg~~~~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~g~~~- 83 (463)
T 2h5g_A 11 VDLGTENLYFQSMVKPA------GPTVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAE- 83 (463)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT-
T ss_pred CcCCCCCCEEEEecCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccc-
Confidence 35678899999888877 77999999999999999999999999999999999999999999999999886443
Q ss_pred h--chhHHHHHHhhcChHHHHHHHHHHHHHhccc-ccccccccccccCCCcEEEEEeeceeEEEEEcCCChhhHHHHHHH
Q 005798 308 A--GYAKSLVSRLALKPGKISSLAKSIRILADME-EPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASL 384 (676)
Q Consensus 308 ~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~ 384 (676)
. |++. .+++..+..|+..+++.++++++.. +..+...+......+...+++++|+|||++|+||||....++++|
T Consensus 84 ~~~Gk~~--~~rl~~a~~ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~nP~n~p~~~a~ 161 (463)
T 2h5g_A 84 GRLAAPL--LKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQVAAL 161 (463)
T ss_dssp TTSCHHH--HHTTCCCHHHHHHHHHHHHHHHHHCTTSTTCEEEEEEEETTEEEEEEEEECCEEEEEESSCTTHHHHHHHH
T ss_pred ccCCCch--hhhhhhhHHHHHHHHHHHHHHHHhhHhhcCcccccccCCCCceeEEEEEcCceEEEEecCCcHHHHHHHHH
Confidence 2 2332 2333345678999999999988543 344543321111134456889999999999999988544489999
Q ss_pred HHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHHhcC-
Q 005798 385 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK- 463 (676)
Q Consensus 385 ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~alP~gv~~~v~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~- 463 (676)
||++||+||+||||.||+|+..|++++.++|.++-|+|+||+|+|+.++++.|..||+||+|+||||+++|+.|++.++
T Consensus 162 ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~~GP~gvv~vv~g~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~aal 241 (463)
T 2h5g_A 162 AIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVNTREEVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAKG 241 (463)
T ss_dssp HHHHTCEEEEECCGGGHHHHHHHHHHHHHHHHTTTCGGGEEECCTTCCC-------CCCSEEEEESCHHHHHHHHHHCSS
T ss_pred HHHcCCEEEEECCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHhcCC
Confidence 9999999999999999999999999999864321189999999986667888899999999999999999999999887
Q ss_pred CCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCccccccceEEEeCccCChhHHHHHHHHHHhcCcEEecCccc--c
Q 005798 464 IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRA--S 541 (676)
Q Consensus 464 ~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~~~g~~~~--~ 541 (676)
||+++|||||||+||++|||+|.|++.+++|+|.|+|+|+|++|+|||+++||+.+.+++++.+.+.|++++||... .
T Consensus 242 ~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~f~nGQ~C~a~~rvlV~~~i~d~p~~~~~i~~~~~~Ga~v~~G~~~~~~ 321 (463)
T 2h5g_A 242 IPVMGHSEGICHMYVDSEASVDKVTRLVRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQVKIHAGPKFASY 321 (463)
T ss_dssp SCBCSCSCCCEEEEECTTCCTTTHHHHHHHHHHSCTTSTTSEEEEEEEGGGTTSHHHHHHHHHHHHTTCEEEECHHHHC-
T ss_pred CCEEEecCCcceEEEcCCCCHHHHHHHHHHHhccCCCccccCcEEEEeccccchHHHHHHHHHHHhCCCEEEeCCccccc
Confidence 99999999999999999999999999999999999559999999999999993257888888888888888765432 1
Q ss_pred ccccC-CCCCcccccccCceEEEEEeCCHHHHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCc
Q 005798 542 KLLQI-PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGAR 620 (676)
Q Consensus 542 ~~~pv-~~~~~~~eE~FGPVl~i~~~~~~deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~p 620 (676)
+++ + ++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+|
T Consensus 322 g~~-~~~~~~i~~eE~FgPvl~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~P 400 (463)
T 2h5g_A 322 LTF-SPSEVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYR 400 (463)
T ss_dssp ---------CCSSCCCCSSEEEEEEESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCSTTT
T ss_pred Ccc-CCCCchHHhccccCceEEEEEeCCHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHhCCeeEEEEeCCccCCCCCC
Confidence 222 2 57899999999999999999999999999999999999999999999999999999999999999877778899
Q ss_pred ccCcccccccccccccccccchhcceeEEEEEEcCceeec--C-CCCceeeccccCC
Q 005798 621 FGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVD--G-DQGVVYTHKNLAL 674 (676)
Q Consensus 621 fG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~~~~~~--~-~~~~~~~~~~~~~ 674 (676)
|||.++||+|+++++++|++|+++|++.|+|.++.++.|+ + .....|+|+.+++
T Consensus 401 fGG~k~SG~G~~r~~~~G~~gl~~ft~~K~v~~~~~~~r~~y~~~~~~~~~~~~~~~ 457 (463)
T 2h5g_A 401 FGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSLKYLHENLPI 457 (463)
T ss_dssp TTSSCCSCEECCSSSCCEECCGGGGEEEEEEEECSSCCGGGGSTTSSCCCCCEECCC
T ss_pred CCCCccCcCCCCcccCCCHHHHHHhceeEEEEECCCcccCCccccchhhcccccCcc
Confidence 9999999998656556799999999999999999998884 2 2246899987754
No 6
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=100.00 E-value=5.3e-80 Score=689.67 Aligned_cols=399 Identities=17% Similarity=0.182 Sum_probs=348.9
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 53 ~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 125 (504)
T 3ek1_A 53 TNPADGSVIGTVPSLS------VATIKEAIDASAKALSGWAAKTAKERAGILRKWFDLIIANADDIALIMTSEQGKPLA- 125 (504)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 4678899999988888 889999999999999999999999999999999999999999999998877654321
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhcccccc-cccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
++ ..|+..+++.+++++...+.. +...+. ...+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 126 ---ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~--~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~A 192 (504)
T 3ek1_A 126 ---EA--------RGEVLYAASFIEWFAEEAKRVYGDTIPA--PQNGQRLTVIRQPVGVTAAITPWNFPAAMITRKAAPA 192 (504)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHHTTCCEEEECC--SSTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--ccccccceeeccCceEEEEECCCcchHHHHHHHHHHH
Confidence 22 236778888888888765432 333221 12345678899999999999999 585 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhcC
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 463 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~ 463 (676)
|++||+||+||||.||+|+..+++++.+ + +|+|+||+|++ +.++++.|..||+||+|+||||+++|+.|++.++
T Consensus 193 LaaGN~VVlKPs~~tp~t~~~l~~l~~e----aGlP~gv~~vv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa 268 (504)
T 3ek1_A 193 LAAGCTMIVRPADLTPLTALALGVLAEK----AGIPAGVLQIVTGKAREIGAELTSNDTVRKLSFTGSTEVGRLLMAQCA 268 (504)
T ss_dssp HHHTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTTEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHHG
T ss_pred HHcCCEEEEECCCcChHHHHHHHHHHHH----hCCCcccEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHhhh
Confidence 9999999999999999999999999986 7 99999999995 5678888999999999999999999999998873
Q ss_pred ---CCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC--------
Q 005798 464 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 531 (676)
Q Consensus 464 ---~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~-------- 531 (676)
||++||||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 269 ~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 347 (504)
T 3ek1_A 269 PTIKRISLELGGNAPFIVFDDADLDAAVDGAMVSKYRNAGQTCVCANRIYVQRGVY-DKFAEKLAAKVKELKVGNGTEPG 347 (504)
T ss_dssp GGTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred hhcCCeEecCCCCCeeEEcCCCCHHHHHHHHHHHHHhcCCCCCCCCCEEEEehhHH-HHHHHHHHHHHhhcccCCCcccc
Confidence 9999999999999999999999999999999999987 999999999999999 799999999988752
Q ss_pred --------------------------cEE-ecCccccccc--c-C-----CCCCcccccccCceEEEEEeCCHHHHHHHH
Q 005798 532 --------------------------VGL-FGGPRASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHI 576 (676)
Q Consensus 532 --------------------------~~~-~g~~~~~~~~--p-v-----~~~~~~~eE~FGPVl~i~~~~~~deAi~~a 576 (676)
+++ +|+....++| | | ++|++++||+||||++|++|+|+||||+++
T Consensus 348 ~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~a 427 (504)
T 3ek1_A 348 VVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGKELGGLFFEPGILTGVTSDMLVAKEETFGPLAPLFAFDTEEEVIAQA 427 (504)
T ss_dssp CCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCEEETTEECCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCceECCeEEecCCCcChhhcccccCcEEEEEEeCCHHHHHHHH
Confidence 122 2433222333 5 2 478999999999999999999999999999
Q ss_pred HccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEEEEEEcCc
Q 005798 577 HQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 656 (676)
Q Consensus 577 N~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~~ 656 (676)
|+++|||++||||+|.++++++++++++|+|+||+.....+..||||.++||+| +++|++|+++||+.|+|+++.+
T Consensus 428 N~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~~t~~K~v~~~~g 503 (504)
T 3ek1_A 428 NDTIFGLAAYFYTENFSRAIRVSEALEYGMVGHNTGLISNEVAPFGGVKQSGLG----REGSKYGIEEYLETKYICSAYK 503 (504)
T ss_dssp HCSSCCSEEEEECCBHHHHHHHHHHSCCSEEEESCSCCCCSSSCBCCSGGGEES----CBSTTTSGGGGEEEEEEEEECC
T ss_pred hCCCCCeEEEEEcCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCcCCcCcCcCC----CCCcHHHHHHhhceEEEEEecC
Confidence 999999999999999999999999999999999998777788999999999987 3679999999999999998765
No 7
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=100.00 E-value=1e-79 Score=685.26 Aligned_cols=397 Identities=15% Similarity=0.154 Sum_probs=347.5
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 33 ~~P~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 105 (484)
T 3ifg_A 33 FDPATGESLGTVPKMG------AAETARAIEAAQAAWAGWRMKTAKERAAILRRWFDLVIANSDDLALILTTEQGKPLA- 105 (484)
T ss_dssp ECTTTCCEEEEEECBC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-
Confidence 3467899999988888 889999999999999999999999999999999999999999999998877654321
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
++ ..|+..+++.+++++...+. .+...+. ...+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 106 ---~a--------~~ev~~~~~~l~~~a~~~~~~~g~~~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~A 172 (484)
T 3ifg_A 106 ---EA--------KGEIAYAASFIEWFAEEGKRVAGDTLPT--PDANKRIVVVKEPIGVCAAITPWNFPAAMIARKVGPA 172 (484)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHHTTCCEEEECC--SSTTEEEEEEEEECSSEEEECCSSSTTHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHhhcCccccc--cCCCceeEEEecCCcEEEEECCCcChHHHHHHHHHHH
Confidence 22 24788889999998875543 3333221 11356678899999999999999 584 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 462 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a- 462 (676)
|++||+||+||||.||+|+..+++++.+ + +|+|+||+|+| +.++++.|..||+||+|+||||+++||.|++.+
T Consensus 173 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gv~~vv~g~~~~~g~~L~~~p~v~~v~FTGS~~~G~~i~~~aa 248 (484)
T 3ifg_A 173 LAAGCPIVVKPAESTPFSALAMAFLAER----AGVPKGVLSVVIGDPKAIGTEITSNPIVRKLSFTGSTAVGRLLMAQSA 248 (484)
T ss_dssp HHHTCCEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCBCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHTG
T ss_pred HHcCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcccEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHHhh
Confidence 9999999999999999999999999986 7 99999999996 567888899999999999999999999999887
Q ss_pred --CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcCc-------
Q 005798 463 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------- 532 (676)
Q Consensus 463 --~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------- 532 (676)
.||++||||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 249 ~~~k~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 327 (484)
T 3ifg_A 249 PTVKKLTLELGGNAPFIVFDDADLDAAVEGAIASKYRNNGQTCVCTNRFFVHERVY-DAFADKLAAAVSKLKVGRGTESG 327 (484)
T ss_dssp GGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred ccCCceEEecCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCcccCCCeEEEcHHHH-HHHHHHHHHHHHhccCCCCCCCC
Confidence 39999999999999999999999999999999999987 999999999999999 7999999999887531
Q ss_pred ---------------------------EE-ecCccc--ccc-c-c-C-----CCCCcccccccCceEEEEEeCCHHHHHH
Q 005798 533 ---------------------------GL-FGGPRA--SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 574 (676)
Q Consensus 533 ---------------------------~~-~g~~~~--~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~deAi~ 574 (676)
++ +|+... .++ + | | ++|++++||+||||++|++|+|+||||+
T Consensus 328 ~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 407 (484)
T 3ifg_A 328 ATLGPLINEAAVKKVESHIADALAKGASLMTGGKRHALGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFASEEELVR 407 (484)
T ss_dssp CCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCceEcCEEEecCCCCChhhCCeeeCcEEEEEEeCCHHHHHH
Confidence 22 244331 233 3 5 2 4789999999999999999999999999
Q ss_pred HHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEEEEEEc
Q 005798 575 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 654 (676)
Q Consensus 575 ~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~ 654 (676)
++|+++|||++||||+|.++++++++++++|+|+||+.....+.+||||.++||+| +++|++|+++||+.|+|+++
T Consensus 408 ~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PfGG~k~SG~G----r~~g~~gl~~~~~~k~v~~~ 483 (484)
T 3ifg_A 408 LANDTEFGLAAYLYSRDIGRVWRVAEALEYGMVGINTGLISNEVAPFGGVKQSGLG----REGSHYGIDDYVVIKYLCVA 483 (484)
T ss_dssp HHHCSSEESEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCSSSCBCCEETTEEC----CBSTTTTTGGGEEEEEEEEE
T ss_pred HHhCCCCCceEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcCcCC----CCchHHHHHHhhceEEEEEe
Confidence 99999999999999999999999999999999999998777788999999999987 46799999999999999864
No 8
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=100.00 E-value=9.7e-80 Score=687.88 Aligned_cols=412 Identities=16% Similarity=0.162 Sum_probs=346.7
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+++++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 32 ~~P~tg~~i~~v~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 104 (506)
T 3rh9_A 32 YNPATGSVIAKVPSMP------EEDVVAAVEAGQSALRLTNPWPIETRRKWLEDIRDGLKENREEIGRILCMEHGKPWK- 104 (506)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH-
Confidence 3577899999988888 889999999999999999999999999999999999999999999999887755431
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhcccccc-cccccccccCCCcEEEEEe-eceeEEEEEcCC-Chh-hHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTS-CPLGVLLIVFES-RPD-ALVQIASL 384 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~PlGVV~~I~p~-~P~-~~~~~~~~ 384 (676)
++ ..|+...++.++++++..+.. +...+. ..+...++++ +|+|||++|+|| ||. +.+++++|
T Consensus 105 ---ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ 170 (506)
T 3rh9_A 105 ---EA--------QGEVDYAAGFFDYCAKHISALDSHTIPE---KPKDCTWTVHYRPVGVTGLIVPWNFPIGMIAKKLSA 170 (506)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHGGGGCCEECSC---CGGGCEEEEEEEECCSEEEECCSSSTTHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCccccc---CCCceeeEeecccceEEEEECCCchHHHHHHHHHHH
Confidence 22 236777888888877655432 332221 1345677888 999999999999 584 67899999
Q ss_pred HHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhc
Q 005798 385 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 462 (676)
Q Consensus 385 ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a 462 (676)
||++||+||+||||.||+|+.++++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|++.|
T Consensus 171 ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~vG~~i~~~a 246 (506)
T 3rh9_A 171 ALAAGCPSVIKPASETPLTMIAFFSVMDK----LDLPDGMVNLVMGKASVIGKVLCEHKDVPMLSFTGSTEVGRKLIVDT 246 (506)
T ss_dssp HHHHTCCEEEECCTTSCHHHHHHHHHHTT----TTCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHT
T ss_pred HHHcCCEEEEEcCCccHHHHHHHHHHHHH----hCcChhhEEEEeCCChHHHHHHHhCCCCCEEEEECCHHHHHHHHHHh
Confidence 99999999999999999999999999976 8 99999999996 667888888899999999999999999999988
Q ss_pred C---CCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC-------
Q 005798 463 K---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 531 (676)
Q Consensus 463 ~---~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~------- 531 (676)
+ ||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 247 a~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~ 325 (506)
T 3rh9_A 247 AEQVKKLALELGGNAPFIVFDDADLEAAADNLIANKFRGGGQTCVCANRIFVHEKVA-DAFGQKLAERVNKMTVGDGMND 325 (506)
T ss_dssp TTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSSSSCCEEEEETTTH-HHHHHHHHHHHHHCCBSCTTST
T ss_pred hhcCCceEEecCCCCceEECCCCCHHHHHHHHHHHHHHhCCCCcccCcEEEEcHHHH-HHHHHHHHHHHHhccCCCCccc
Confidence 3 9999999999999999999999999999999999988 999999999999999 799999999988752
Q ss_pred ---------------------------cEE-ecCccc---ccc-c-c-C-----CCCCcccccccCceEEEEEeCCHHHH
Q 005798 532 ---------------------------VGL-FGGPRA---SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAA 572 (676)
Q Consensus 532 ---------------------------~~~-~g~~~~---~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~deA 572 (676)
+++ +|+... .++ + | | ++|++++||+||||++|++|+|+|||
T Consensus 326 ~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deA 405 (506)
T 3rh9_A 326 GIDIGPLINKQGFDKVKRHLQDALDKGASLVAGKQPAELGDGLFFPPTVVQGVDREMCCYQEETFGPLVPMALFRTEEEV 405 (506)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEESCCGGGCCSSSCCCCEEEECCCTTSHHHHSCCCSSEEEEEEECCHHHH
T ss_pred CCcccccCCHHHHHHHHHHHHHHHHCCCEEEecCCcCCCCCCcEECCeEEccCCCCChhhcccccCcEEEEEEeCCHHHH
Confidence 233 355331 233 3 5 2 46899999999999999999999999
Q ss_pred HHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEEEEE
Q 005798 573 IDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 652 (676)
Q Consensus 573 i~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~ 652 (676)
|+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||.++||+| +++|++|+++||+.|+|+
T Consensus 406 i~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----~~~G~~gl~~ft~~K~v~ 481 (506)
T 3rh9_A 406 IDAGNDTEFGLASYVFTADAERAQRVAAGLRFGHVGWNTGTGPTPEAPFGGMKASGIG----REGGLEGLFEFVEAQTVP 481 (506)
T ss_dssp HHHHTCSSCCSEEEEECSCHHHHHHHHHHCCCSEEEESCCCCCCTTSCBCCSGGGEES----CBSHHHHHTTTEEEEEEE
T ss_pred HHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCccCcCcCcCC----cCccHHHHHHhcceEEEE
Confidence 9999999999999999999999999999999999999998877888999999999987 467999999999999999
Q ss_pred EcCceee---cCCCCceeecc
Q 005798 653 RGNGHVV---DGDQGVVYTHK 670 (676)
Q Consensus 653 ~~~~~~~---~~~~~~~~~~~ 670 (676)
++.++.- ++---.-|.|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~ 502 (506)
T 3rh9_A 482 RGFAENLYFQSHHHHHHWSHP 502 (506)
T ss_dssp EC-------------------
T ss_pred EcCccceeecccccccccCcc
Confidence 8875522 33333445543
No 9
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Probab=100.00 E-value=3.1e-79 Score=684.26 Aligned_cols=401 Identities=21% Similarity=0.227 Sum_probs=345.3
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 32 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 104 (505)
T 3prl_A 32 SAPASGVALGSIPALS------QEEVNDAIQGAKDAQKIWKIRPIHERVDLLYAWADLLEERKEIIGELIMHEVAKPKK- 104 (505)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 4577899999988888 889999999999999999999999999999999999999999999999888765432
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCC---CcEEEEEeeceeEEEEEcCC-Chh-hHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELAD---GLILEKTSCPLGVLLIVFES-RPD-ALVQIA 382 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 382 (676)
++ ..|+..+++.++++++..+. .+...+....+. +...+++|+|+|||++|+|| ||. +.++++
T Consensus 105 ---ea--------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 173 (505)
T 3prl_A 105 ---SA--------IGEVSRTADIIRHTADEALRLNGETLKGDQFKGGSSKKIALVEREPLGVVLAISPFNYPVNLAAAKI 173 (505)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHHHTCCEEEEEGGGSTTTCSSEEEEEEEEECSEEEEEECSSSTTHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCccccccccccccCCceeEEEEcCCcEEEEECCCccHHHHHHHHH
Confidence 22 23667777777777654332 233222111011 35678899999999999999 584 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHH
Q 005798 383 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 460 (676)
Q Consensus 383 ~~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~ 460 (676)
+|||++||+||+||||.||+|+..|++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 174 a~ALaaGN~VVlKpse~tp~ta~~l~~ll~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 249 (505)
T 3prl_A 174 APALVTGNTVVFKPATQGSLSGIKMVEALAD----AGAPEGIIQVVTGRGSVIGDHLVEHPGIDMITFTGGTTTGERISE 249 (505)
T ss_dssp HHHHHTTCEEEEEECSTTHHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHHTCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999986 7 99999999997 6678888999999999999999999999999
Q ss_pred hcC-CCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC-------
Q 005798 461 STK-IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 531 (676)
Q Consensus 461 ~a~-~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~------- 531 (676)
.|+ ||++||||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 250 ~aal~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~ 328 (505)
T 3prl_A 250 KAKMIPVVLELGGKDPAIVLDDADLKLTASQIVSGAFSYSGQRCTAIKRVFVQDSVA-DQLVANIKELVEQLTVGSPEDD 328 (505)
T ss_dssp HCCSSCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCSSSEEEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTTT
T ss_pred HccCCcEEEECCCCCCCccCCCCCHHHHHHHHHHHHHhcCCCccccCceEEEeHHHH-HHHHHHHHHHHHhcccCCCCCc
Confidence 886 9999999999999999999999999999999999988 999999999999999 799999999888752
Q ss_pred --------------------------cEE-ecCccccccc-c-C-----CCCCcccccccCceEEEEEeCCHHHHHHHHH
Q 005798 532 --------------------------VGL-FGGPRASKLL-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIH 577 (676)
Q Consensus 532 --------------------------~~~-~g~~~~~~~~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~deAi~~aN 577 (676)
+++ +|+.....++ | | ++|++++||+||||++|++|+|+||||+++|
T Consensus 329 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~V~~~~~~deAi~~aN 408 (505)
T 3prl_A 329 ADITPVIDEKSAAFIQGLIDDALENGATLLSGNKRQGNLLSPTLLDDVTPAMRVAWEEPFGPVLPIIRVKDANEAISLSN 408 (505)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCEETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHHHHHH
T ss_pred CcCCcccCHHHHHHHHHHHHHHHHCCCEEEecCCCCCceeCCeEeecCCCCChhhcCCccCcEEEEEEeCCHHHHHHHHh
Confidence 222 2443222233 5 2 4689999999999999999999999999999
Q ss_pred ccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCC-CCCCCcccCcccccccccccccccccchhcceeEEEEEEcCc
Q 005798 578 QHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTR-FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 656 (676)
Q Consensus 578 ~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~-~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~~ 656 (676)
+++|||++||||+|.++++++++++++|+|+||+++. ..+.+||||.++||+| +++|++|+++||+.|+|+++.+
T Consensus 409 ~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~~PFGG~k~SG~G----r~~g~~~~~~f~~~k~v~~~~~ 484 (505)
T 3prl_A 409 QSDYGLQASIFTKDTDRAINIGKHLEVGTVHINAKTERGPDHFPFLGVKKSGLG----VQGIKPSLLSMTRERVTVLNLA 484 (505)
T ss_dssp TSSEESEEEEECSCHHHHHHHHHTSCSSEEEESSCCCSCSTTSCBCCEETTEES----CBSHHHHHHHTEEEEEEEEEC-
T ss_pred CCCCCeEEEEEcCCHHHHHHHHHHCCeeEEEEcCCCCCCCCCCCcCCcCcCCCC----cCccHHHHHHhhceEEEEEeCC
Confidence 9999999999999999999999999999999999865 4577899999999987 3679999999999999988764
No 10
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=100.00 E-value=4e-79 Score=684.59 Aligned_cols=398 Identities=14% Similarity=0.147 Sum_probs=344.3
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+++++++++|++||+.|+.+|.++|.++|++++++|++++++|++++++|++++..
T Consensus 35 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 107 (517)
T 3r31_A 35 IFPATGEMIAKLHAAT------PAIVERAIASAKRAQKEWAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPIQ- 107 (517)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 4577899999988888 889999999999999999999999999999999999999999999999887654321
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhccccc-----ccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-----IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQI 381 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~ 381 (676)
++ |+..+++.++++++..+. .+...+. ..+. .+++++|+|||++|+|| ||. +.+++
T Consensus 108 ---ea----------ev~~~~~~~~~~a~~~~~~~~~~~g~~~~~---~~~~-~~~~~~P~GVV~~I~PwN~P~~~~~~~ 170 (517)
T 3r31_A 108 ---ET----------IVADPTSGADAFEFFGGIAPSALNGDYIPL---GGDF-AYTKRVPLGVCVGIGAWNYPQQIACWK 170 (517)
T ss_dssp ---HH----------HHHSHHHHHHHHHHHHHHHHHHTCCCEEEC---SSSE-EEEEEEECSEEEEECCSSSHHHHHHHH
T ss_pred ---HH----------HHHHHHHHHHHHHHHhhhccccccCccccc---CCCc-ceEEEcCccEEEEECCCcchHHHHHHH
Confidence 11 455566666666544332 2332221 2344 78899999999999999 584 67899
Q ss_pred HHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHH
Q 005798 382 ASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 460 (676)
Q Consensus 382 ~~~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~ 460 (676)
++|||++||+||+||||.||+|+.++++++.+ + ||+|+||+|+|+.++++.|..||+||+|+||||+++|+.|++
T Consensus 171 ~a~ALaaGN~VVlKps~~tp~t~~~l~~ll~e----aGlP~gvv~vv~g~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 246 (517)
T 3r31_A 171 AAPALVAGNAMVFKPSENTPLGALKIAEILIE----AGLPKGLFNVIQGDRDTGPLLVNHPDVAKVSLTGSVPTGRKVAA 246 (517)
T ss_dssp HHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH----TTCCTTSEEECCCCTTHHHHHHTCTTEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEcCcccHHHHHHHHHHHHH----hCcCcccEEEEECCHHHHHHHHhCCCcCEEeccCCHHHHHHHHH
Confidence 99999999999999999999999999999987 7 999999999986678888889999999999999999999998
Q ss_pred hc---CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC-----
Q 005798 461 ST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 531 (676)
Q Consensus 461 ~a---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~----- 531 (676)
.| .||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 247 ~aa~~lk~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~ 325 (517)
T 3r31_A 247 AAAGHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVCSNGTRVFVQKKAK-ARFLENLKRRTEAMILGDPL 325 (517)
T ss_dssp HHHHTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHTSCCHHHHTTCEEEEEEGGGH-HHHHHHHHHHHHHCCBCCTT
T ss_pred HhhcCCCcEEEEcCCcCeEEEecCCCHHHHHHHHHHHHhcCCCceeccCceEEEeHHHH-HHHHHHHHHHHHhccCCCCC
Confidence 87 49999999999999999999999999999999999998 999999999999999 799999999988752
Q ss_pred -----------------------------cEE-ecCc-c----cccc-c-c-C-----CCCCcccccccCceEEEEEeCC
Q 005798 532 -----------------------------VGL-FGGP-R----ASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDD 568 (676)
Q Consensus 532 -----------------------------~~~-~g~~-~----~~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~ 568 (676)
.++ +||. . ..++ + | | ++|++++||+||||++|++|+|
T Consensus 326 ~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 405 (517)
T 3r31_A 326 DYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVLDFDD 405 (517)
T ss_dssp STTCSBCCBSCHHHHHHHHHHHHHHHHHTCEEEECCSCCSSCCSSSBCCCCEEEEEECTTSHHHHSCCSSSEEEEEEECC
T ss_pred CcCCcccCCcCHHHHHHHHHHHHHHHhCCCEEEECCccCcccCCCCceECCEEEecCCCCCccccceeeccEEEEEEeCC
Confidence 223 3552 0 1233 3 5 2 4789999999999999999999
Q ss_pred HHHHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeE
Q 005798 569 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 648 (676)
Q Consensus 569 ~deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~ 648 (676)
+||||+++|+++|||++||||+|.++++++++++++|+|+||+.+...+.+||||.++||+| +++|++|+++||+.
T Consensus 406 ~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~ft~~ 481 (517)
T 3r31_A 406 EDEVLARANATEFGLAGGVFTADLARAHRVVDGLEAGTLWINTYNLCPVEIPFGGSKQSGFG----RENSAAALEHYSEL 481 (517)
T ss_dssp HHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHSCCSEEEESSCCCCCTTSCBCCEETTEEC----CBSTGGGGGGSEEE
T ss_pred HHHHHHHHhCCCCCeeEEEEeCCHHHHHHHHHHCCcceEEECCCCCCCCCCCcCCcCcCCCC----cCchHHHHHHhhce
Confidence 99999999999999999999999999999999999999999998877888999999999987 46799999999999
Q ss_pred EEEEEcCceee
Q 005798 649 RWILRGNGHVV 659 (676)
Q Consensus 649 k~v~~~~~~~~ 659 (676)
|+|+++.++.+
T Consensus 482 K~v~~~~~~~~ 492 (517)
T 3r31_A 482 KTVYVSTGKVD 492 (517)
T ss_dssp EEEEECCC---
T ss_pred EEEEEcCCCCC
Confidence 99999877654
No 11
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=100.00 E-value=3.4e-79 Score=680.56 Aligned_cols=396 Identities=17% Similarity=0.164 Sum_probs=340.3
Q ss_pred HHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhhc
Q 005798 230 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAG 309 (676)
Q Consensus 230 ~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g 309 (676)
+|.+|+.++++...+ .+++++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 10 nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~-- 81 (484)
T 3ros_A 10 NPYTNEAFASYDNPT------SKQIDEAINLAHALYKKWRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKLLS-- 81 (484)
T ss_dssp ETTTTEEEEECCCCC------HHHHHHHHHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH--
T ss_pred CCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH--
Confidence 467888888887777 889999999999999999999999999999999999999999999999888765421
Q ss_pred hhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHHH
Q 005798 310 YAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAI 386 (676)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~AL 386 (676)
++. .|+...++.++++++..+. .+...+. ..+...+++++|+|||++|+|| ||. +.+++++|||
T Consensus 82 --ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~AL 148 (484)
T 3ros_A 82 --ESK--------EEVELCVSICNYYADHGPEMLKPTKLN---SDLGNAYYLKQSTGVIMACEPWNFPLYQVIRVFAPNF 148 (484)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHHHHTSCEEEC---CTTSEEEEEEECCCEEEEECCSSSTTHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHhcCCeecc---CCCceeEEEecCCceEEEECCCchHHHHHHHHHHHHH
Confidence 222 2455555555555543221 1222111 1345678899999999999999 584 6789999999
Q ss_pred HhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhcC-
Q 005798 387 RSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK- 463 (676)
Q Consensus 387 aaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~- 463 (676)
++||+||+||||.||+|+..|++++.+ + ||+|+||+|+| ++++++ |..||+||+|+||||+++|+.|++.|+
T Consensus 149 aaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~-L~~~p~vd~I~fTGS~~~G~~i~~~aa~ 223 (484)
T 3ros_A 149 IVGNPILLKHAHNVPGSAALTAKIIKR----AGAPEGSLINLYPSYDQLAD-IIADPRIQGVALTGSERGGSAVAEAAGK 223 (484)
T ss_dssp HHTCCEEEECCTTCHHHHHHHHHHHHH----HTCCTTSEEEECCCHHHHHH-HHTSTTEEEEEEESCHHHHHHHHHHHHH
T ss_pred HcCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCChHHHHH-HHhCCCcCEEEEECCHHHHHHHHHHHhc
Confidence 999999999999999999999999987 7 99999999996 566788 788999999999999999999998873
Q ss_pred --CCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC---------
Q 005798 464 --IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG--------- 531 (676)
Q Consensus 464 --~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~--------- 531 (676)
||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 224 ~lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~~ 302 (484)
T 3ros_A 224 NLKKSTMELGGNDAFIVLDDADPQVLRNVLNDARTYNDGQVCTSSKRIIVEKSRY-DEVLHELKNVFSNLKAGDPLEADT 302 (484)
T ss_dssp TTCEEEEECCCCCEEEECTTCCHHHHHHHHTTTTTGGGGCCTTSCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred cCCceEeecCCCCcceeCCCCCHHHHHHHHHHHHhcCCCCCccCCceEEEcHHHH-HHHHHHHHHHHHhccCCCCCCCCC
Confidence 9999999999999999999999999999999999988 999999999999999 799999999988752
Q ss_pred -------------------------cEE-ecCcc--cccc-c-c-C-----CCCCcccccccCceEEEEEeCCHHHHHHH
Q 005798 532 -------------------------VGL-FGGPR--ASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 575 (676)
Q Consensus 532 -------------------------~~~-~g~~~--~~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~deAi~~ 575 (676)
+++ +|+.. ..++ + | | ++|++++||+||||++|++|+|+||||++
T Consensus 303 ~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 382 (484)
T 3ros_A 303 TLPPMNSEKAKEKLEAQVKEAIDAGAKVFYQYPEIDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEVFVVEDDNAAIQL 382 (484)
T ss_dssp CBCCCSCHHHHHHHHHHHHHHHHTTCEEEEECCCCCCSSCCCCCEEEECCCTTSTTTTSCCCSSEEEEEEESSHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCcCCCCCceeCCeEeecCCCCCcccccccccceEEEEEcCCHHHHHHH
Confidence 222 24432 1233 3 5 2 46899999999999999999999999999
Q ss_pred HHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEEEEEEcC
Q 005798 576 IHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGN 655 (676)
Q Consensus 576 aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~ 655 (676)
+|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.|+|+++.
T Consensus 383 aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~ft~~K~v~~~~ 458 (484)
T 3ros_A 383 ANDSSYGLGSSVIGSDIDRAKKVSAQIETGMTVINGRWITSGELPFGGIKKSGYG----RELSGLGLMAFVNEHLVIDVT 458 (484)
T ss_dssp HHSSSCCSCEEEECSCHHHHHHHHHHSCSSCCEETSCCCCCTTSCBCCSGGGEES----CBSHHHHHTTTCEEEEEEECG
T ss_pred HhCCCCCcEEEEECCCHHHHHHHHHhCccceEEECCCCCCCCCCCcCCcCcccCC----cCchHHHHHHhheeEEEEECC
Confidence 9999999999999999999999999999999999998777888999999999987 467999999999999999875
Q ss_pred c
Q 005798 656 G 656 (676)
Q Consensus 656 ~ 656 (676)
.
T Consensus 459 ~ 459 (484)
T 3ros_A 459 K 459 (484)
T ss_dssp G
T ss_pred C
Confidence 4
No 12
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=100.00 E-value=5.2e-79 Score=681.35 Aligned_cols=399 Identities=14% Similarity=0.139 Sum_probs=347.2
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|+++++.|++++.
T Consensus 45 ~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 116 (498)
T 4f3x_A 45 LNPRTGAGIIDLAEAS------HAQIDAAVDAAERAFVGWSQTTPAERSNALLKIADAIEKEADEFAALEALNCGKPI-- 116 (498)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 4577899999988888 88999999999999999999999999999999999999999999999887765432
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhcccccc-cccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
.++. ..|+...++.++++++..+.. +...+.. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 117 --~ea~-------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~A 185 (498)
T 4f3x_A 117 --NAVK-------NDELPAIIDCWRFFAGAVRNLHAPAAGEY--LPGHTSMIRRDPIGIVGSIAPWNYPLMMMAWKLAPA 185 (498)
T ss_dssp --HHHH-------HTHHHHHHHHHHHHHHHTTCCEEECBEEE--ETTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHHh-------HHHHHHHHHHHHHHHHHHHHhcCccccCC--cccccceEEEcCcceEEEECCCchHHHHHHHHHHHH
Confidence 1221 136778888888887655432 3322211 2355678899999999999999 585 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhc--
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 462 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~alP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a-- 462 (676)
|++||+||+||||.||+|+.++++++.+ +||+|+||+|+| ++++++.|..||+||+|+||||+++|+.|++.+
T Consensus 186 LaaGNtVVlKPs~~tp~t~~~l~~l~~e----alP~gv~nvv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa~ 261 (498)
T 4f3x_A 186 IGGGNTVVFKPSEQTPLTALKLARLIAD----ILPEGVVNVITGRGETVGNALINHPKVGMVSITGDIATGKKVLAAAAK 261 (498)
T ss_dssp HHTTCEEEEECCTTCCHHHHHHHHHHHT----TSCTTSEEECCCCTTTHHHHHHTCTTCCEEEEESCHHHHHHHHHHHHT
T ss_pred HHcCCeEEEECCcccHHHHHHHHHHHHH----hCCcCeEEEEeCCchHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHHh
Confidence 9999999999999999999999999986 499999999996 667888899999999999999999999999887
Q ss_pred -CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhc----------
Q 005798 463 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE---------- 530 (676)
Q Consensus 463 -~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~---------- 530 (676)
.||++||||||||+||++|||+|+|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++
T Consensus 262 ~~k~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~vG~p~d~~~ 340 (498)
T 4f3x_A 262 TVKRTHLELGGKAPVIVYGDADLEAVVNGIRTFGYYNAGQDCTAACRIYAEAGIY-EKLVADLTSAVSTIRYNLDDDTEN 340 (498)
T ss_dssp TTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCEEEEEEETTTH-HHHHHHHHHHHTTCCCSCSSGGGC
T ss_pred hCCceeecCCCCCcEEECCCCCHHHHHHHHHHHHHhcCCCCccCCceEEecHHHH-HHHHHHHHHHHHhcccCCCccccC
Confidence 39999999999999999999999999999999999987 999999999999999 79999999988754
Q ss_pred ------------------------Cc-EEe-cCccc--ccc-c-c-C-----CCCCcccccccCceEEEEEeCCHHHHHH
Q 005798 531 ------------------------GV-GLF-GGPRA--SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 574 (676)
Q Consensus 531 ------------------------~~-~~~-g~~~~--~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~deAi~ 574 (676)
|+ +++ |+... .++ + | | ++|++++||+||||++|++|+|+||||+
T Consensus 341 ~~Gpli~~~~~~~v~~~i~~a~~~Ga~~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 420 (498)
T 4f3x_A 341 EIGPLISRRQRDRVASFVERAADQKHIEITTGGRTGSDEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRFTGKDDAVA 420 (498)
T ss_dssp SSCCCSCHHHHHHHHHHHHHHHHSTTCEEEECCSBCCSSSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECTTSCHHH
T ss_pred ccccCcCHHHHHHHHHHHHHHHHCCCCEEEECCccCCCCCcEECCEEeecCCCCChhhCCceeCcEEEEEEeCCHHHHHH
Confidence 22 332 44321 233 3 5 2 4689999999999999999999999999
Q ss_pred HHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEEEEEEc
Q 005798 575 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 654 (676)
Q Consensus 575 ~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~ 654 (676)
++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.|+|+++
T Consensus 421 ~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~~l~~~t~~k~v~~~ 496 (498)
T 4f3x_A 421 WANDSDYGLASSVWTKDISKAMRAASRLQYGCTWINTHFMLTNEMPHGGIKQSGYG----KDMSVYALEDYTAVRHIMIN 496 (498)
T ss_dssp HHHSSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCCSCCCTTSCBCCSGGGEEC----CBSHHHHHHHTEEEEEEEEE
T ss_pred HHhcCCCCceEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcCCcC----ccchHHHHHHhhceEEEEEe
Confidence 99999999999999999999999999999999999998877788999999999987 46799999999999999886
Q ss_pred C
Q 005798 655 N 655 (676)
Q Consensus 655 ~ 655 (676)
.
T Consensus 497 ~ 497 (498)
T 4f3x_A 497 H 497 (498)
T ss_dssp C
T ss_pred C
Confidence 5
No 13
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=100.00 E-value=1.8e-78 Score=678.36 Aligned_cols=398 Identities=15% Similarity=0.156 Sum_probs=347.8
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 41 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 112 (503)
T 1a4s_A 41 FEPATGRVLCQMVPCG------AEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTI-- 112 (503)
T ss_dssp ECTTTCCEEEEECCCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4577899899888877 88999999999999999999999999999999999999999999999887765432
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
.++ ..|+..+++.++++++..+. .++..+.. .+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 113 --~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~---~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~A 179 (503)
T 1a4s_A 113 --TEA--------EYDIDAAWQCIEYYAGLAPTLSGQHIQLP---GGAFAYTRREPLGVCAGILAWNYPFMIAAWKCAPA 179 (503)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHGGGCCEEEEECG---GGCEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCCcccCC---CCceeEEEEecCceEEEECCCcchHHHHHHHHHHH
Confidence 122 24678888888888765543 24332211 234568889999999999999 585 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 462 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a- 462 (676)
|++||+||+||||.||+|+..+++++.+ + +|+|+||+|+| + ++++.|..||+||+|+||||+++||.|++.+
T Consensus 180 LaaGN~VVlKps~~tp~ta~~l~~l~~~----aGlP~gvv~vv~g~~-~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa 254 (503)
T 1a4s_A 180 LACGNAVVFKPSPMTPVTGVILAEIFHE----AGVPVGLVNVVQGGA-ETGSLLCHHPNVAKVSFTGSVPTGKKVMEMSA 254 (503)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCSH-HHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCCChHHHHHHHHHHHH----hCCCcCeEEEEecCc-hHHHHHHhCCCcCEEEEeCCHHHHHHHHHHhh
Confidence 9999999999999999999999999986 7 99999999996 6 7888888999999999999999999999887
Q ss_pred --CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC--------
Q 005798 463 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 531 (676)
Q Consensus 463 --~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~-------- 531 (676)
.||+++|||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 255 ~~~~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 333 (503)
T 1a4s_A 255 KTVKHVTLELGGKSPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIM-PQFLEEVVKRTKAIVVGDPLLTE 333 (503)
T ss_dssp TTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHTTCGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred hcCCceEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEehHHH-HHHHHHHHHHHHhcCCCCCcccC
Confidence 59999999999999999999999999999999999987 999999999999999 799999999988652
Q ss_pred --------------------------cEE-ecCccc--------ccc-c-c-C-----CCCCcccccccCceEEEEEeCC
Q 005798 532 --------------------------VGL-FGGPRA--------SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDD 568 (676)
Q Consensus 532 --------------------------~~~-~g~~~~--------~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~ 568 (676)
+++ .|+... .++ + | | ++|++++||+||||++|++|+|
T Consensus 334 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 413 (503)
T 1a4s_A 334 TRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDT 413 (503)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSBCCCSSGGGTTSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECC
T ss_pred CccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccccccCCceeCCEEEecCCCCCHHHhccccCceEEEEecCC
Confidence 233 355432 233 3 5 2 4688999999999999999999
Q ss_pred HHHHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeE
Q 005798 569 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 648 (676)
Q Consensus 569 ~deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~ 648 (676)
+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++|++.
T Consensus 414 ~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----~~~G~~~l~~f~~~ 489 (503)
T 1a4s_A 414 EEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSISPVEVPFGGYKMSGFG----RENGQATVDYYSQL 489 (503)
T ss_dssp HHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCSSEEEESCCCCCCTTSCBCCSGGGEEC----CBSTTGGGGGSEEE
T ss_pred HHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHCceeEEEECCCCCCCCCCCCCCcCCCCCC----ccchHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999998777778999999999986 46799999999999
Q ss_pred EEEEEcCce
Q 005798 649 RWILRGNGH 657 (676)
Q Consensus 649 k~v~~~~~~ 657 (676)
|+|.++.++
T Consensus 490 k~v~~~~~~ 498 (503)
T 1a4s_A 490 KTVIVEMGD 498 (503)
T ss_dssp EEEEECCSC
T ss_pred eEEEEccCC
Confidence 999987654
No 14
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=100.00 E-value=6.4e-79 Score=683.41 Aligned_cols=399 Identities=16% Similarity=0.205 Sum_probs=349.3
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESS--RRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 306 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~--~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~ 306 (676)
.+|.+|+.++++...+ .+++++|+++|++|| +.|+.+|.++|.++|++++++|++++++|++++++|++++.
T Consensus 53 ~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 126 (520)
T 3ed6_A 53 INPYNQEVIFTVSEGT------KEDAERAILAARRAFESGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTL 126 (520)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 5678899999988777 889999999999999 89999999999999999999999999999999887765432
Q ss_pred hhchhHHHHHHhhcChHHHHHHHHHHHHHhcccccc-cccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHH
Q 005798 307 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 383 (676)
Q Consensus 307 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~ 383 (676)
.++ ..|+..+++.+++++...+.. +...+. . ..+...+++|+|+|||++|+|| ||. +.+++++
T Consensus 127 ----~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~-~-~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a 192 (520)
T 3ed6_A 127 ----EES--------YADMDDIHNVFMYFAGLADKDGGEMIDS-P-IPDTESKIVKEPVGVVTQITPWNYPLLQASWKIA 192 (520)
T ss_dssp ----HHH--------HHHHHHHHHHHHHHHHHTTSCCEEEECC-S-STTEEEEEEEEECCEEEEECCSSSHHHHHHHHHH
T ss_pred ----HHH--------HHHHHHHHHHHHHHHHHHHHhcCeeccc-C-CCCCcccccccCccEEEEECCCccHHHHHHHHHH
Confidence 122 236888888999888765543 333221 1 1345678899999999999999 585 5689999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHh
Q 005798 384 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 461 (676)
Q Consensus 384 ~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~ 461 (676)
|||++||+||+||||.||+|+.++++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|++.
T Consensus 193 pALaaGNtVVlKPs~~tp~t~~~l~~l~~e----aGlP~gvvnvv~g~~~~~g~~L~~~p~vd~V~FTGS~~vG~~i~~~ 268 (520)
T 3ed6_A 193 PALATGCSLVMKPSEITPLTTIRVFELMEE----VGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKHIMKN 268 (520)
T ss_dssp HHHHHTCEEEEECCTTCCHHHHHHHHHHHH----HCCCTTSEEECCSCCTTHHHHHHHCTTCSEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCEEEEEcCCcchHHHHHHHHHHHH----hCCCCCeEEEEeCCChHHHHHHHhCCCcCEEEEECCHHHHHHHHHH
Confidence 999999999999999999999999999986 7 99999999996 67788999999999999999999999999988
Q ss_pred c---CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC------
Q 005798 462 T---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------ 531 (676)
Q Consensus 462 a---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~------ 531 (676)
+ .||++||||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 269 aa~~l~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~l~vG~p~d 347 (520)
T 3ed6_A 269 AANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNSIK-DKFEQALIDRVKKIKLGNGFD 347 (520)
T ss_dssp HHTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGTSTTCCCEEEEEHHHH-HHHHHHHHHHHTTCCBCCTTS
T ss_pred hhhcCCCEEEEcCCCCeeEECCCCCHHHHHHHHHHHHHhcCCCCcccCceEEEcHHHH-HHHHHHHHHHHHhccCCCCcc
Confidence 7 39999999999999999999999999999999999988 999999999999999 799999999887652
Q ss_pred ----------------------------cEE-ecCccc------cccc--c-C-----CCCCcccccccCceEEEEEeCC
Q 005798 532 ----------------------------VGL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD 568 (676)
Q Consensus 532 ----------------------------~~~-~g~~~~------~~~~--p-v-----~~~~~~~eE~FGPVl~i~~~~~ 568 (676)
+++ +||... .++| | | ++|++++||+||||++|++|+|
T Consensus 348 ~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~f~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 427 (520)
T 3ed6_A 348 ADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFET 427 (520)
T ss_dssp TTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCCCGGGTTTTCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESS
T ss_pred CCCcccccCCHHHHHHHHHHHHHHHhCCCEEEeCCCcCccccCCCCceECCeEEecCCCCCccccCceeCcEEEEEEeCC
Confidence 122 344331 2333 5 2 4689999999999999999999
Q ss_pred HHHHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeE
Q 005798 569 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 648 (676)
Q Consensus 569 ~deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~ 648 (676)
+||||+++|+++|||++||||+|.++++++++++++|+|+||+.....+..||||.++||+| +++|++|+++||+.
T Consensus 428 ~deAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----re~G~~gl~~~t~~ 503 (520)
T 3ed6_A 428 EQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIG----RELGKEGLEEYLVS 503 (520)
T ss_dssp HHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEESCSCCCCTTSCBCCSGGGEES----CBSHHHHHHTTEEE
T ss_pred HHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHHCCcceEEECCCCCCCCCCCcCCcCcCcCC----ccchHHHHHHhhce
Confidence 99999999999999999999999999999999999999999998777788999999999987 36799999999999
Q ss_pred EEEEEcCc
Q 005798 649 RWILRGNG 656 (676)
Q Consensus 649 k~v~~~~~ 656 (676)
|+|+++.+
T Consensus 504 k~v~~~~~ 511 (520)
T 3ed6_A 504 KHILTNTN 511 (520)
T ss_dssp EEEEEESS
T ss_pred EEEEEcCC
Confidence 99998765
No 15
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*
Probab=100.00 E-value=8e-79 Score=677.91 Aligned_cols=414 Identities=18% Similarity=0.214 Sum_probs=346.1
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 17 ~nP~tg~~i~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 89 (486)
T 3pqa_A 17 INPYSLEVIKKIPALS------REEAKEAIDTAEKYKEVMKNLPITKRYNILMNIAKQIKEKKEELAKILAIDAGKPIK- 89 (486)
T ss_dssp ECTTTCCEEEEECCCC------HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 4577899999988777 889999999999999999999999999999999999999999999999887654431
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
++ ..|+...++.++++++..+. .+...+. .+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 90 ---ea--------~~Ev~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 154 (486)
T 3pqa_A 90 ---QA--------RVEVERSIGTFKLAAFYVKEHRDEVIPS----DDRLIFTRREPVGIVGAITPFNFPLNLSAHKIAPA 154 (486)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHHHHCCEEEECC----TTEEEEEEEEECSEEEEEECSSSHHHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCceecC----CCceeEEEEccccEEEEECCCchHHHHHHHHHHHH
Confidence 22 13566677777776654322 2322221 245678899999999999999 585 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 462 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a- 462 (676)
|++||+||+||||.||+|+.++++++.++++++ +|+|+||+|+| ++++++.|..||+||+|+||||+++||.|++.+
T Consensus 155 LaaGN~VVlKps~~tp~t~~~l~~l~~~al~~~GlP~gvv~vv~g~~~~~g~~L~~~p~vd~V~fTGS~~~g~~i~~~aa 234 (486)
T 3pqa_A 155 IATGNVIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNLLTGAGEVVGDEIVVNEKVNMISFTGSSKVGELITKKAG 234 (486)
T ss_dssp HHTTCEEEEEECTTSCHHHHHHHHHHHHHHHHTTCCGGGEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHCC
T ss_pred HHcCCEEEEECCCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCchHHHHHHHhCCCccEEEEECChHHHHHHHHHcC
Confidence 999999999999999999999999999998888 99999999996 667788888899999999999999999999987
Q ss_pred CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcCc---------
Q 005798 463 KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV--------- 532 (676)
Q Consensus 463 ~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~--------- 532 (676)
.||++||||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 235 ~~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~~~ 313 (486)
T 3pqa_A 235 FKKIALELGGVNPNIVLKDADLNKAVNALIKGSFIYAGQVCISVGMILVDESIA-DKFIEMFVNKAKVLNVGNPLDEKTD 313 (486)
T ss_dssp SSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTTCS
T ss_pred CCceeeccCCcCcEEEcCCCCHHHHHHHHHHHHHhcCCCCccCCcEEEEeHHHH-HHHHHHHHHHHHhcccCCCCcCCCC
Confidence 59999999999999999999999999999999999988 999999999999999 7999999999886531
Q ss_pred -------------------------EE-ecCccccccc-c-C----CCCCcccccccCceEEEEEeCCHHHHHHHHHccC
Q 005798 533 -------------------------GL-FGGPRASKLL-Q-I----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHG 580 (676)
Q Consensus 533 -------------------------~~-~g~~~~~~~~-p-v----~~~~~~~eE~FGPVl~i~~~~~~deAi~~aN~~~ 580 (676)
++ +|+.....++ | | ++|++++||+||||++|++|+| ||||+++|+++
T Consensus 314 ~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~g~~~~Ptvl~v~~~~~i~~eEiFGPVl~v~~~~~-deAi~~aN~~~ 392 (486)
T 3pqa_A 314 VGPLISVEHAEWVEKVVEKAIDEGGKLLLGGKRDKALFYPTILEVDRDNILCKTETFAPVIPIIRTNE-EEMIDIANSTE 392 (486)
T ss_dssp BCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCEETTEECCEEEECCTTSGGGTCCCCSSEEEEEEECH-HHHHHHHTCSS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCEEEecCCCCCcEeccEEEeCCCCChhhcccccccEEEEEEEcH-HHHHHHHhcCC
Confidence 22 2443222233 5 2 4689999999999999999999 99999999999
Q ss_pred CCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCC-CCCCcccCcccccccccccccccccchhcceeEEEEEEcCce-e
Q 005798 581 SAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGH-V 658 (676)
Q Consensus 581 ~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~-~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~~~-~ 658 (676)
|||++||||+|.++++++++++++|+|+||+++.+ .+.+||||.++||+| +++|++|+++||+.|+|+++.+. +
T Consensus 393 ~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~k~SG~G----r~~g~~gl~~f~~~k~v~~~~~~~~ 468 (486)
T 3pqa_A 393 YGLHSAIFTNDINKSLKFAENLEFGGVVINDSSLFRQDNMPFGGVKKSGLG----REGVKYAMEEMSNIKTIIISKAENL 468 (486)
T ss_dssp CCSEEEEECSBHHHHHHHHHHSCSSEEEESSCTTCCCTTSCBCCSGGGEES----CBSHHHHHHHTEEEEEEEEEC----
T ss_pred CCcEEEEECCCHHHHHHHHHhCCcceEEEeCCCCcCCCCCCCCCcCcCcCC----CCCcHHHHHHhhceEEEEEcCCccC
Confidence 99999999999999999999999999999998653 358899999999986 46799999999999999987644 2
Q ss_pred e--cCCCCceeecc
Q 005798 659 V--DGDQGVVYTHK 670 (676)
Q Consensus 659 ~--~~~~~~~~~~~ 670 (676)
+ +++--.-|.|.
T Consensus 469 ~~~~~~~~~~~~~~ 482 (486)
T 3pqa_A 469 YFQSHHHHHHWSHP 482 (486)
T ss_dssp --------------
T ss_pred CCCCCCccccccCc
Confidence 2 34444455554
No 16
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=100.00 E-value=1.3e-78 Score=682.01 Aligned_cols=402 Identities=18% Similarity=0.188 Sum_probs=348.3
Q ss_pred HHHHh-CCceeeEEecCCccccchhhHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 005798 229 IKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESS--RRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 305 (676)
Q Consensus 229 ~~~~t-g~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~--~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~ 305 (676)
.++.+ |+.++++...+ .+++++++++|++|| +.|+.+|.++|.++|++++++|++++++|++++++|++++
T Consensus 43 ~nP~t~g~~i~~~~~~~------~~dv~~av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 116 (528)
T 3u4j_A 43 VSPGHAGEVVGTWPEAS------ADDVRKAVAAARKAFDAGPWPRMSGAERSRLMFKVADLILARQEELALIESLEVGKP 116 (528)
T ss_dssp ECTTSTTCEEEEEECCC------HHHHHHHHHHHHHHHHTSSGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred eCCCCCCcEEEEEeCCC------HHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34678 89999988888 889999999999999 7899999999999999999999999999999988876543
Q ss_pred HhhchhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHH
Q 005798 306 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 382 (676)
Q Consensus 306 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 382 (676)
. .++ ..|+...++.++++++..+. .+...+.. ..+...+++++|+|||++|+|| ||. +.++++
T Consensus 117 ~----~ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 182 (528)
T 3u4j_A 117 I----AQA--------RGEIGFCADLWSYAAGQARALEGQTHNNI--GDDRLGLVLREPVGVVGIITPWNFPFIIASERV 182 (528)
T ss_dssp H----HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEECCS--CTTEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred H----HHH--------HHHHHHHHHHHHHHHHHHHHhcCeeeccC--CCCceeEEEeccceEEEEECCCccHHHHHHHHH
Confidence 2 122 23667777777777765432 23322211 1355678899999999999999 585 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHH
Q 005798 383 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 460 (676)
Q Consensus 383 ~~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~ 460 (676)
+|||++||+||+||||.||+|+.++++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++
T Consensus 183 a~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 258 (528)
T 3u4j_A 183 PWAIGSGCTVVLKPSEFTSGTSIRLAELARE----AGIPDGVFNVVTGYGDPAGQVLAEDPNVDMVAFTGSVRVGTKLGE 258 (528)
T ss_dssp HHHHHTTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCCSSTTHHHHHHHCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCeEEEEcCCccHHHHHHHHHHHHH----hCCCCCeEEEEeCCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999987 7 99999999996 6678888888999999999999999999998
Q ss_pred hc---CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC-----
Q 005798 461 ST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 531 (676)
Q Consensus 461 ~a---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~----- 531 (676)
.+ .||++||||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 259 ~aa~~lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~ 337 (528)
T 3u4j_A 259 IAARTVKRVGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEGIR-DALMERLLDISRKVAFGDPL 337 (528)
T ss_dssp HHHTTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGH-HHHHHHHHHHHHHCCEECTT
T ss_pred HHHhcCCceEEecCCCCeeEECCCCCHHHHHHHHHHHHhhcCCCCCcCCCEEEEechHH-HHHHHHHHHHHHhhcCCCCC
Confidence 77 39999999999999999999999999999999999987 999999999999999 799999999987652
Q ss_pred -----------------------------cEE-ecCccc---cccc--c-C-----CCCCcccccccCceEEEEEeCCHH
Q 005798 532 -----------------------------VGL-FGGPRA---SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 570 (676)
Q Consensus 532 -----------------------------~~~-~g~~~~---~~~~--p-v-----~~~~~~~eE~FGPVl~i~~~~~~d 570 (676)
+++ +|+... .++| | | ++|++++||+||||++|++|+|+|
T Consensus 338 ~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 417 (528)
T 3u4j_A 338 NERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTPDMSIAREEIFGPVLSTLTFKTAD 417 (528)
T ss_dssp STTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSEECTTTSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEESSHH
T ss_pred CcCCccCCccCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCcEecceEEecCCCCCccccceeeccEEEEEEeCCHH
Confidence 233 244331 2333 5 2 468999999999999999999999
Q ss_pred HHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEEE
Q 005798 571 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 650 (676)
Q Consensus 571 eAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~ 650 (676)
|||+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||.++||+| +++|++|+++||+.|+
T Consensus 418 eAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~ft~~K~ 493 (528)
T 3u4j_A 418 EAVALANATEFGLSASVWSTNLETALQTIRRIRAGRCWINSVIDGTPELPIGGYKKSGLG----RELGRYGFDEYSQFKG 493 (528)
T ss_dssp HHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEES----CBSTTHHHHHTEEEEE
T ss_pred HHHHHHhcCCCCcEEEEEcCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCcCCcCcCCCC----cCchHHHHHHhhceEE
Confidence 999999999999999999999999999999999999999998877888999999999986 3569999999999999
Q ss_pred EEEcCceee
Q 005798 651 ILRGNGHVV 659 (676)
Q Consensus 651 v~~~~~~~~ 659 (676)
|+++.++.+
T Consensus 494 v~~~~~~~~ 502 (528)
T 3u4j_A 494 VHVTLGRPA 502 (528)
T ss_dssp EEEESSCCC
T ss_pred EEEeCCCCC
Confidence 999876433
No 17
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=100.00 E-value=2e-78 Score=677.55 Aligned_cols=399 Identities=16% Similarity=0.189 Sum_probs=347.5
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 33 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~- 105 (497)
T 3k2w_A 33 LSPSTGKVIGEIPAGC------KADAENALEVAQAAQKAWAKLTARTRQNMLRTFANKIRENKHILAPMLVAEQGKLLS- 105 (497)
T ss_dssp ECSSSCSEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 3467889999988888 889999999999999999999999999999999999999999999998877654321
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhcccccc-cccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
++ ..|+...++.+++++...+.. +...+.. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 106 ---~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~A 172 (497)
T 3k2w_A 106 ---VA--------EMEVDVTATFIDYGCDNALTIEGDILPSD--NQDEKIYIHKVPRGVVVGITAWNFPLALAGRKIGPA 172 (497)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHTTTTCCEEEEECS--STTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCcceeEEEcCCceEEEECCCccHHHHHHHHHHHH
Confidence 22 136778888888887655432 3332211 2356678899999999999998 585 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhcC
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 463 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~ 463 (676)
|++||+||+|||+.||+|+..|++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|++.++
T Consensus 173 LaaGN~VVlKps~~tp~t~~~l~~ll~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~fTGS~~~G~~i~~~aa 248 (497)
T 3k2w_A 173 LITGNTMVLKPTQETPLATTELGRIAKE----AGLPDGVLNVINGTGSVVGQTLCESPITKMITMTGSTVAGKQIYKTSA 248 (497)
T ss_dssp HHTTCEEEEECCSSSCHHHHHHHHHHHH----TTCCTTSEEECCSCTTTHHHHHHHCSSEEEEEEESCHHHHHHHHHHHT
T ss_pred HHcCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCCchHHHHHHHhCCCcCEEEEECcHHHHHHHHHHhh
Confidence 9999999999999999999999999986 7 99999999996 6678888888999999999999999999998874
Q ss_pred ---CCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcCc-------
Q 005798 464 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------- 532 (676)
Q Consensus 464 ---~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------- 532 (676)
||+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 249 ~~l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~vg~p~~~~ 327 (497)
T 3k2w_A 249 EYMTPVMLELGGKAPMVVMDDADLDKAAEDALWGRFANCGQVCTCVERLYVHASVY-DEFMAKFLPLVKGLKVGDPMDAD 327 (497)
T ss_dssp TTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTSEEEEEEETTTH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred hcCCCeEEEcCCCCceEEcCCCCHHHHHHHHHHHHHhCCCCCCcCCcEEEEeHHHH-HHHHHHHHHHHHhccCCCCCCCC
Confidence 9999999999999999999999999999999999988 999999999999999 7999999999987632
Q ss_pred ---------------------------EE-ecCcc--c----ccc-c-c-C-----CCCCcccccccCceEEEEEeCCHH
Q 005798 533 ---------------------------GL-FGGPR--A----SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 570 (676)
Q Consensus 533 ---------------------------~~-~g~~~--~----~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~d 570 (676)
++ +|+.+ . .++ + | | ++|++++||+||||++|++|+|+|
T Consensus 328 ~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 407 (497)
T 3k2w_A 328 SQMGPKCNQREIDNIDHIVHEAIKQGATVATGGKTATVEGFEGGCWYEPTVLVDVKQDNIVVHEETFGPILPIVKVSSME 407 (497)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHHHCEEEECCC---------CCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESCHH
T ss_pred CccccCcCHHHHHHHHHHHHHHHHCCCEEEecCccCCccccCCCceeCCEEEecCCCCcHhhcCCccCcEEEEEEeCCHH
Confidence 22 35431 1 233 3 5 2 468999999999999999999999
Q ss_pred HHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEEE
Q 005798 571 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 650 (676)
Q Consensus 571 eAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~ 650 (676)
|||+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||.++||+| +++|++|+++||+.|+
T Consensus 408 eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~k~SG~G----~~~G~~gl~~ft~~k~ 483 (497)
T 3k2w_A 408 QAIEFCNDSIYGLSAYVHTQSFANINQAISDLEVGEVYINRGMGEQHQGFHNGWKQSGFG----GEDGKFGLEQYLEKKT 483 (497)
T ss_dssp HHHHHHTCSSEESEEEEECSBHHHHHHHHHHCCSSEEEESCCSCCCTTSCBCCEETSEES----CBSHHHHHHTTEEEEE
T ss_pred HHHHHHhcCCCCcEEEEEcCCHHHHHHHHHhCCeeEEEEcCCCCCCCCCCcCCcCCCcCC----ccchHHHHHHhcceEE
Confidence 999999999999999999999999999999999999999998877788999999999986 3679999999999999
Q ss_pred EEEcCc
Q 005798 651 ILRGNG 656 (676)
Q Consensus 651 v~~~~~ 656 (676)
|.++..
T Consensus 484 v~~~~~ 489 (497)
T 3k2w_A 484 VYINEA 489 (497)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 988654
No 18
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=100.00 E-value=1.1e-78 Score=681.70 Aligned_cols=401 Identities=15% Similarity=0.168 Sum_probs=345.9
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+++++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 47 ~nP~tg~~i~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 119 (521)
T 4e4g_A 47 FNPATGEVQGTVALAS------DADLAAAVESAKAAQPKWAATNPQRRARVFMKFVQLLNDNMNELAEMLSREHGKTID- 119 (521)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 4577899999988878 889999999999999999999999999999999999999999999999887755431
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhcccccc-cccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
++ ..|+..+++.++++++..+.. +...+. ...+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 120 ---ea--------~~Ev~~~~~~l~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~A 186 (521)
T 4e4g_A 120 ---DA--------KGDIVRGLEVCEFVIGIPHLQKSEFTEG--AGPGIDMYSIRQPVGIGAGITPFNFPGMIPMWMFAPA 186 (521)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHTHHHHTCEEEEEE--EETTEEEEEEEEECCEEEEECCSSCTTHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--CCCCcceeEEEcCCcEEEEECCCcchHHHHHHHHHHH
Confidence 22 236788888888887654332 222211 12345678899999999999999 585 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHHhc--
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 462 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a-- 462 (676)
|++||+||+||||.||+|+.++++++.+ + ||+|+||+|+|+.+.++.|..||+||+|+||||+++||.|++.|
T Consensus 187 LaaGN~VVlKpse~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~~~L~~~p~vd~I~FTGS~~vG~~i~~~aa~ 262 (521)
T 4e4g_A 187 IACGNAFILKPSERDPSVPIRLAELMIE----AGLPAGILNVVNGDKGAVDAILTHPDIAAVSFVGSTPIARYVYGTAAM 262 (521)
T ss_dssp HHTTCEEEEECCTTSTHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTCTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCcchHHHHHHHHHHHH----hCCCcCeEEEEeCChHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHhh
Confidence 9999999999999999999999999986 7 99999999997555567788899999999999999999999887
Q ss_pred -CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCc-cCChhHHHHHHHHHHhcCc-------
Q 005798 463 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKD-LACNGALNELVVELQHEGV------- 532 (676)
Q Consensus 463 -~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~-i~d~~f~~~l~~~~~~~~~------- 532 (676)
.||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||++ +| |+|+++|+++++++.+
T Consensus 263 ~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l~~~~~~~~vG~~~~~~ 341 (521)
T 4e4g_A 263 NGKRAQCFGGAKNHMIIMPDADLDQAANALIGAGYGSAGERCMAISVAVPVGEETA-NRLIDKLVPMVESLRIGPYTDEK 341 (521)
T ss_dssp TTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTSEEEEEEBSHHHH-HHHHHHHHHHHHTCCBCCTTCTT
T ss_pred cCCCeeecCCCCCeEEEcCCCCHHHHHHHHHHHHHhCCCCCcccCeEEEEeCchHH-HHHHHHHHHHHHhccCCCCCCcc
Confidence 49999999999999999999999999999999999977 9999999999999 99 7999999999887521
Q ss_pred ---------------------------EE-ecCcc------cccc-c-c-C-----CCCCcccccccCceEEEEEeCCHH
Q 005798 533 ---------------------------GL-FGGPR------ASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 570 (676)
Q Consensus 533 ---------------------------~~-~g~~~------~~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~d 570 (676)
++ +|+.+ ..++ + | | ++|++++||+||||++|++|+|+|
T Consensus 342 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 421 (521)
T 4e4g_A 342 ADMGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKLQGYENGHFIGGCLFDDVTPDMDIYKTEIFGPVLSVVRARNYE 421 (521)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCCTTCTTSCCCCCEEEESCCTTSHHHHSCCCSSEEEECCBSSHH
T ss_pred CccCCCCCHHHHHHHHHHHHHHHHCCCEEEecCcccCCCcCCCCcEECCEEEEcCCCCCHhhcCcccCcEEEEEEeCCHH
Confidence 23 34432 1233 3 5 2 468999999999999999999999
Q ss_pred HHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCC-CCCcccCcccccccccccccccccchhcceeEE
Q 005798 571 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFC-DGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 649 (676)
Q Consensus 571 eAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~-~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k 649 (676)
|||+++|+++|||++||||+|.++++++++++++|+|+||+++... +.+||||.+.||+| +.+++|++|+++||+.|
T Consensus 422 eAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~~PfGG~k~SG~G--~~~~~G~~gl~~ft~~K 499 (521)
T 4e4g_A 422 EALSLPMKHEYGNGVAIYTRDGDAARDFASRINIGMVGVNVPIPVPLAYHSFGGWKSSSFG--DLNQHGTDSIKFWTRTK 499 (521)
T ss_dssp HHHHHHHHSSEESEEEEECSBHHHHHHHHHHCCCSEEEESCSSCCCCTTSCBCCEETTEES--SCCBSHHHHHHHTEEEE
T ss_pred HHHHHHhcCCCCeEEEEECCCHHHHHHHHHhCCeeeEEECCCCCCCCCCCCcCCcccCCCC--CCccchHHHHHHhheEE
Confidence 9999999999999999999999999999999999999999986553 67899999999986 33467999999999999
Q ss_pred EEEEcCc
Q 005798 650 WILRGNG 656 (676)
Q Consensus 650 ~v~~~~~ 656 (676)
+|++++.
T Consensus 500 ~v~~~~~ 506 (521)
T 4e4g_A 500 TITSRWP 506 (521)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 9998754
No 19
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=100.00 E-value=4e-78 Score=674.51 Aligned_cols=397 Identities=14% Similarity=0.148 Sum_probs=344.1
Q ss_pred HHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 005798 230 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR---RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 306 (676)
Q Consensus 230 ~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~ 306 (676)
+|.+|+.++++...+ .+|+++++++|++||+ .|+.+|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 41 nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 114 (500)
T 1o04_A 41 NPSTGEVICQVAEGD------KEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPY 114 (500)
T ss_dssp ETTTTEEEEEEECBC------HHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred CCCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 467888899988888 8899999999999999 9999999999999999999999999999999988765442
Q ss_pred hhchhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCCC-hh-hHHHHHH
Q 005798 307 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFESR-PD-ALVQIAS 383 (676)
Q Consensus 307 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~-P~-~~~~~~~ 383 (676)
. ++. ..|+...++.++++++..+. .+...+. ..+...+++++|+|||++|+||| |. +.+++++
T Consensus 115 ~----ea~-------~~ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a 180 (500)
T 1o04_A 115 V----ISY-------LVDLDMVLKCLRYYAGWADKYHGKTIPI---DGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLG 180 (500)
T ss_dssp H----HHH-------HTHHHHHHHHHHHHHHHTTTCCEEEECC---SSSEEEEEEEEECCEEEEECCSSSHHHHHHHHHH
T ss_pred H----HHH-------HHHHHHHHHHHHHHHHHHHHhhCcceec---CCCceEEEEEecCCcEEEECCCCchHHHHHHHHH
Confidence 1 221 13567777788887764432 3332221 23445688999999999999995 95 6789999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHh
Q 005798 384 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 461 (676)
Q Consensus 384 ~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~ 461 (676)
|||++||+||+||||.||+|+..|++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.
T Consensus 181 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~~ 256 (500)
T 1o04_A 181 PALATGNVVVMKVAEQTPLTALYVANLIKE----AGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVA 256 (500)
T ss_dssp HHHHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCBCTTTHHHHHHTCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCEEEEECCccChHHHHHHHHHHHH----hCCCcCeEEEEecCcHHHHHHHHhCCCcCEEEEECCHHHHHHHHHh
Confidence 999999999999999999999999999986 7 99999999996 66788888899999999999999999999987
Q ss_pred cC----CCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC-----
Q 005798 462 TK----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 531 (676)
Q Consensus 462 a~----~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~----- 531 (676)
++ ||++||||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 257 aa~~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~ 335 (500)
T 1o04_A 257 AGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDIY-DEFVERSVARAKSRVVGNPF 335 (500)
T ss_dssp HHHTTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHH-HHHHHHHHHHHHHCCBCCTT
T ss_pred hhhhcCceEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhccCCCCCCCCCEEEEehhHH-HHHHHHHHHHHHhCcCCCcc
Confidence 64 9999999999999999999999999999999999987 999999999999999 799999999987752
Q ss_pred -----------------------------cEEe-cCccc--ccc-c-c-C-----CCCCcccccccCceEEEEEeCCHHH
Q 005798 532 -----------------------------VGLF-GGPRA--SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 571 (676)
Q Consensus 532 -----------------------------~~~~-g~~~~--~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~de 571 (676)
++++ |+... .++ + | | ++|++++||+||||++|++|+|+||
T Consensus 336 ~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 415 (500)
T 1o04_A 336 DSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEE 415 (500)
T ss_dssp STTCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCCSSSSCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECCHHH
T ss_pred cccCccCcccCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEeCCCCCChhhhCcccceEEEEEeeCCHHH
Confidence 2332 55432 233 3 5 2 4689999999999999999999999
Q ss_pred HHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEEEE
Q 005798 572 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 651 (676)
Q Consensus 572 Ai~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v 651 (676)
||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.+.||+| +++|++|+++|++.|+|
T Consensus 416 Ai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----~~~G~~gl~~f~~~K~v 491 (500)
T 1o04_A 416 VVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSG----RELGEYGLQAYTEVKTV 491 (500)
T ss_dssp HHHHHHCSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCSSCCCTTSCBCCSGGGEES----CBSTGGGGGGGEEEEEE
T ss_pred HHHHHhcCCCCceEEEECCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCCCCcCCCCCC----ccchHHHHHHhcceEEE
Confidence 99999999999999999999999999999999999999998766778999999999886 46799999999999999
Q ss_pred EEcC
Q 005798 652 LRGN 655 (676)
Q Consensus 652 ~~~~ 655 (676)
.++.
T Consensus 492 ~~~~ 495 (500)
T 1o04_A 492 TVKV 495 (500)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8864
No 20
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=100.00 E-value=3.9e-78 Score=676.20 Aligned_cols=401 Identities=17% Similarity=0.187 Sum_probs=343.5
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHH
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR-----RLQALQSQDRRKILLDVADALEANESLIKVENEADVA 303 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~ 303 (676)
.++.+|+.++++...+ .+|+++++++|++||+ .|+.+|.++|.++|++++++|++|+++|++++++|++
T Consensus 28 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~G 101 (503)
T 3iwj_A 28 INPATQNIIGDIPAAT------KEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCG 101 (503)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3577899999988888 8899999999999999 9999999999999999999999999999999988775
Q ss_pred HHHhhchhHHHHHHhhcChHHHHHHHHHHHHHhcccccc-cccc-cccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHH
Q 005798 304 AAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQIL-KRTELADGLILEKTSCPLGVLLIVFES-RPD-ALV 379 (676)
Q Consensus 304 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~ 379 (676)
++.. ++ ..|+..+++.+++++...+.. +... +......+...+++++|+|||++|+|| ||. +.+
T Consensus 102 k~~~----ea--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~ 169 (503)
T 3iwj_A 102 KPLD----EA--------AWDIDDVAGCFEYYADLAEKLDARQKAPVSLPMDTFKSHVLREPIGVVGLITPWNYPMLMAT 169 (503)
T ss_dssp CCHH----HH--------HHHHHHHHHHHHHHHHHHHHHHHHTTEEECCSCTTEEEEEEEEECCEEEEECCSSSHHHHHH
T ss_pred CCHH----HH--------HHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCccceEEEcCCceEEEECCCchHHHHHH
Confidence 5421 22 125666666677666543221 2111 100011345678899999999999999 585 668
Q ss_pred HHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHH
Q 005798 380 QIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQ 457 (676)
Q Consensus 380 ~~~~~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~ 457 (676)
++++|||++||+||+||||.||+|+..+++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++|+.
T Consensus 170 ~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~~~v~~I~FTGS~~~G~~ 245 (503)
T 3iwj_A 170 WKVAPALAAGCAAILKPSELASLTCLELGEICKE----VGLPPGVLNILTGLGPEAGAPLATHPDVDKVAFTGSSATGSK 245 (503)
T ss_dssp HHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCHHHHTHHHHTCTTCCEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEeCCcHHHHHHHhhCCCccEEEEECcHHHHHH
Confidence 9999999999999999999999999999999986 7 99999999996 5678888999999999999999999999
Q ss_pred HHHhc---CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC--
Q 005798 458 IKEST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-- 531 (676)
Q Consensus 458 i~~~a---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~-- 531 (676)
|++.+ .||++||||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 246 i~~~aa~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g 324 (503)
T 3iwj_A 246 IMTAAAQLVKPVSLELGGKSPLVVFEDVDLDKAAEWAIFGCFWTNGQICSATSRLILHESIA-TEFLNRIVKWIKNIKIS 324 (503)
T ss_dssp HHHHHGGGTCCEEEECCCCEEEEECSSSCHHHHHHHHHHHHTGGGGCCTTCEEEEEEETTTH-HHHHHHHHHHHHTCCBS
T ss_pred HHHHHhcCCCCEEEECCCCCceEEcCCCCHHHHHHHHHHHHHhcCCCCcccCCeeEEcHHHH-HHHHHHHHHHHHhccCC
Confidence 99887 38999999999999999999999999999999999988 999999999999999 799999999887642
Q ss_pred --------------------------------cEE-ecCccc----ccc-c-c-C-----CCCCcccccccCceEEEEEe
Q 005798 532 --------------------------------VGL-FGGPRA----SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIV 566 (676)
Q Consensus 532 --------------------------------~~~-~g~~~~----~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~ 566 (676)
+++ +|+... .++ + | | ++|++++||+||||++|++|
T Consensus 325 ~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~ 404 (503)
T 3iwj_A 325 DPLEEGCRLGPVVSEGQYEKILKFVSNAKSEGATILTGGSRPEHLKKGFFIEPTIITDVTTNMQIWREEVFGPVLCVKTF 404 (503)
T ss_dssp CTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCCSSSCCCCEEEESCCTTSHHHHSCCCSSEEEEEEE
T ss_pred CCCCCCCcccCccCHHHHHHHHHHHHHHHHCCCEEEecCCCCccCCCCceeCCeeeecCCCCchhhCceeeCceEEEEEe
Confidence 223 344322 233 3 5 2 46899999999999999999
Q ss_pred CCHHHHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcce
Q 005798 567 DDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLL 646 (676)
Q Consensus 567 ~~~deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft 646 (676)
+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.+.||+| +++|.+|+++|+
T Consensus 405 ~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PfGG~k~SG~G----~~~G~~g~~~f~ 480 (503)
T 3iwj_A 405 STEEEAIDLANDTVYGLGAAVISNDLERCERVTKAFKAGIVWVNCSQPCFTQAPWGGVKRSGFG----RELGEWGLDNYL 480 (503)
T ss_dssp SSHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHCCSSEEEESSSCCCCTTSCBCCSGGGEEC----CBSHHHHHHTTE
T ss_pred CCHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcccCC----CcchHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998777788999999999986 357999999999
Q ss_pred eEEEEEEcCc
Q 005798 647 TTRWILRGNG 656 (676)
Q Consensus 647 ~~k~v~~~~~ 656 (676)
+.|+|+++.+
T Consensus 481 ~~k~v~~~~~ 490 (503)
T 3iwj_A 481 SVKQVTQYIS 490 (503)
T ss_dssp EEEEEEEECC
T ss_pred CeEEEEEeCC
Confidence 9999998653
No 21
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=100.00 E-value=7.7e-78 Score=671.40 Aligned_cols=398 Identities=15% Similarity=0.149 Sum_probs=344.4
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 43 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 115 (495)
T 1wnd_A 43 YNPATGDVLLEIAEAS------AEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLH- 115 (495)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 4578899999988888 889999999999999999999999999999999999999999999999887754421
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCCC-hh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFESR-PD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~-P~-~~~~~~~~A 385 (676)
++.. .|+...++.++++++..+. .++..+.. ..+...+++++|+|||++|+||| |. +.+++++||
T Consensus 116 ---ea~~-------~Ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~A 183 (495)
T 1wnd_A 116 ---SAFN-------DEIPAIVDVFRFFAGAARCLNGLAAGEY--LEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPA 183 (495)
T ss_dssp ---HHHH-------THHHHHHHHHHHHHHHTTCCEEECBEEE--ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred ---HHHH-------HHHHHHHHHHHHHHHHHHHhcCccccCC--CCCceeEEeeecCCeEEEECCCcchHHHHHHHHHHH
Confidence 2211 1577777888887765432 23333211 12445688899999999999995 94 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhc--
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 462 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~alP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a-- 462 (676)
|++||+||+|||+.||+|+.+|++++.+ +||+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 184 LaaGN~VVlKps~~tp~t~~~l~~l~~e----alP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~aa~ 259 (495)
T 1wnd_A 184 LAAGNCVVLKPSEITPLTALKLAELAKD----IFPAGVVNILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTAS 259 (495)
T ss_dssp HHTTCEEEEECCTTCCHHHHHHHHHHTT----TSCTTSEEECCCCTTTTHHHHHTCTTEEEEEEESCHHHHHHHHHHHGG
T ss_pred HHcCCeeEeeCCCCChHHHHHHHHHHHH----hCCcCeEEEEeCCCHHHHHHHHhCCCcCEEEEECcHHHHHHHHHHHHh
Confidence 9999999999999999999999999986 499999999996 667788888899999999999999999999887
Q ss_pred -CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhc----------
Q 005798 463 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE---------- 530 (676)
Q Consensus 463 -~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~---------- 530 (676)
.||+++|||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++
T Consensus 260 ~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~~ 338 (495)
T 1wnd_A 260 SIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIY-DTLVEKLGAAVATLKSGAPDDEST 338 (495)
T ss_dssp GTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCCCEEEEETTTH-HHHHHHHHHHHHTCCBCCTTSTTC
T ss_pred cCCccccccCCCCeEEECCcCCHHHHHHHHHHHHHhcCCCCCCCCcEEEecchhH-HHHHHHHHHHHHhccCCCCccCCC
Confidence 49999999999999999999999999999999999987 999999999999999 79999999988764
Q ss_pred ------------------------C-cEEe-cCc-cc-ccc-c-c-C-----CCCCcccccccCceEEEEEeCCHHHHHH
Q 005798 531 ------------------------G-VGLF-GGP-RA-SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 574 (676)
Q Consensus 531 ------------------------~-~~~~-g~~-~~-~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~deAi~ 574 (676)
| ++++ ||. .. .++ + | | ++|++++||+||||++|++|+|+||||+
T Consensus 339 ~~Gpli~~~~~~rv~~~i~~a~~~G~a~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 418 (495)
T 1wnd_A 339 ELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVVN 418 (495)
T ss_dssp CBCCCSCHHHHHHHHHHHHHHHHTSSCEEEECCSBCSSSSCCBCCEEEECCCTTSHHHHSCCCSSEEEEEEECCHHHHHH
T ss_pred CccCCCCHHHHHHHHHHHHHHHhCCCeEEEECCcccCCCCCeeCCEEEeCCCCCChhhhccccCceEEEEEeCCHHHHHH
Confidence 3 4443 554 32 233 3 5 2 4689999999999999999999999999
Q ss_pred HHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEEEEEEc
Q 005798 575 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 654 (676)
Q Consensus 575 ~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~ 654 (676)
++|+++|||++||||+|.++++++++++++|+|+||+.....+.+||||.+.||+| +++|++|+++|++.|+|.++
T Consensus 419 ~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~f~~~k~v~~~ 494 (495)
T 1wnd_A 419 WANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYG----KDMSLYGLEDYTVVRHVMVK 494 (495)
T ss_dssp HHHSSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCCCCCCTTSCBCCSGGGEEC----CBSHHHHHHTTEEEEEEEEE
T ss_pred HHhcCCCCeeEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCCCcCcCC----ccchHHHHHHhhCeEEEEec
Confidence 99999999999999999999999999999999999997766788999999999886 36799999999999999764
No 22
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=100.00 E-value=2.2e-78 Score=678.53 Aligned_cols=400 Identities=15% Similarity=0.180 Sum_probs=344.1
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR--RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 306 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~ 306 (676)
.+|.+|+.++++...+ .+|+++++++|++||+ .|+.+|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 57 ~nP~tg~~i~~v~~a~------~~dv~~av~aA~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 130 (517)
T 2o2p_A 57 INPTDGSVICQVSLAQ------VSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVY 130 (517)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHTSGGGTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCH
Confidence 3477899999998888 8899999999999999 9999999999999999999999999999999887765432
Q ss_pred hhchhHHHHHHhhcChHHHHHHHHHHHHHhccccc-cccccccc-ccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHH
Q 005798 307 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRT-ELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 382 (676)
Q Consensus 307 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 382 (676)
.++. ..|+..+++.++++++..+. .+...+.. ....+...+++|+|+|||++|+|| ||. +.++++
T Consensus 131 ----~ea~-------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 199 (517)
T 2o2p_A 131 ----TLAL-------KTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKT 199 (517)
T ss_dssp ----HHHH-------HTTTHHHHHHHHHHHHHGGGCCEEEECCCCCTTSCEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred ----HHHH-------HHHHHHHHHHHHHHHHHHHHhcCccccccccCCCCceEEEEecCCccEEEECCCcchHHHHHHHH
Confidence 1221 02567778888888765543 34332210 001233568899999999999999 585 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHH
Q 005798 383 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 460 (676)
Q Consensus 383 ~~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~ 460 (676)
+|||++||+||+||||.||+|+..|++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++
T Consensus 200 a~ALaaGNtVVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~g~~~g~~L~~~~~v~~V~FTGS~~~G~~I~~ 275 (517)
T 2o2p_A 200 AACLAAGNTVVIKPAQVTPLTALKFAELTLK----AGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMK 275 (517)
T ss_dssp HHHHHTTCEEEEECCTTCCHHHHHHHHHHHH----TTCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCccHHHHHHHHHHHHH----hCCCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999987 7 99999999997 5667888889999999999999999999998
Q ss_pred hcC----CCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC----
Q 005798 461 STK----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG---- 531 (676)
Q Consensus 461 ~a~----~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~---- 531 (676)
.++ ||++||||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 276 ~aa~~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~vGdp 354 (517)
T 2o2p_A 276 SCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIH-NQFVQKVVEEVEKMKIGNP 354 (517)
T ss_dssp HHHHHTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHH-HHHHHHHHHHHTTCCBSCT
T ss_pred HhHHhcCCeEEEECCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCeEEEEeHHHH-HHHHHHHHHHHHhcCCCCC
Confidence 764 9999999999999999999999999999999999987 999999999999999 799999999887642
Q ss_pred ------------------------------cEE-ecCccc--ccc-c-c-C-----CCCCcccccccCceEEEEEeCC--
Q 005798 532 ------------------------------VGL-FGGPRA--SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDD-- 568 (676)
Q Consensus 532 ------------------------------~~~-~g~~~~--~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~-- 568 (676)
+++ +||... .++ + | | ++|++++||+||||++|++|+|
T Consensus 355 ~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~~ 434 (517)
T 2o2p_A 355 LERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGD 434 (517)
T ss_dssp TSTTCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSGGGTSCCCSSEEEEEEECTTC
T ss_pred CCCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeccccCCCCCCeECCEEEeCCCCCChhhhccccccEEEEEEcCCCC
Confidence 222 344332 233 3 5 2 4689999999999999999999
Q ss_pred HHHHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeE
Q 005798 569 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 648 (676)
Q Consensus 569 ~deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~ 648 (676)
+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++|++.
T Consensus 435 ~deAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----r~~G~~~l~~~~~~ 510 (517)
T 2o2p_A 435 VDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFG----KDLGEAALNEYLRI 510 (517)
T ss_dssp SHHHHHHHTCSSCCSCCEEECSBHHHHHHHHHHCCSSEEEESCSSCCCTTSCBCCCGGGEEC----CBSHHHHHHTTEEE
T ss_pred HHHHHHHHhcCCCCceEEEeCCCHHHHHHHHHhcCEeEEEECCCCCCCCCCCcCCcCcCCcC----ccChHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999998766778999999999986 36799999999999
Q ss_pred EEEEEc
Q 005798 649 RWILRG 654 (676)
Q Consensus 649 k~v~~~ 654 (676)
|+|+++
T Consensus 511 k~v~~~ 516 (517)
T 2o2p_A 511 KTVTFE 516 (517)
T ss_dssp EEEEEE
T ss_pred eEEEee
Confidence 999874
No 23
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=100.00 E-value=8.3e-78 Score=671.00 Aligned_cols=397 Identities=17% Similarity=0.168 Sum_probs=346.9
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+++++++++|++||+.|+.+|.++|.++|++++++|++++++|++++++|++++..
T Consensus 30 ~~P~t~~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~- 102 (481)
T 3jz4_A 30 TNPANGDKLGSVPKMG------ADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLA- 102 (481)
T ss_dssp ECTTTCCEEEEEECBC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-
Confidence 4577899999988878 889999999999999999999999999999999999999999999998877654421
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhcccc-cccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
++ ..|+..+++.+++++.... ..+...+. ...+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 103 ---~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 169 (481)
T 3jz4_A 103 ---EA--------KGEISYAASFIEWFAEEGKRIYGDTIPG--HQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPA 169 (481)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHGGGCCEEEECC--SSTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--cCCCceEEEEEcCccEEEEECCCcchHHHHHHHHHHH
Confidence 21 2477888888888876543 33433321 12355678899999999999998 584 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhcC
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 463 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~ 463 (676)
|++||+||+||||.||+|+..+++++.+ + +|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.++
T Consensus 170 LaaGN~VVlKps~~tp~~~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~fTGS~~~g~~i~~~aa 245 (481)
T 3jz4_A 170 LAAGCTMVLKPASQTPFSALALAELAIR----AGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQCA 245 (481)
T ss_dssp HHHTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTTEEECCBCTHHHHHHHHHCTTEEEEEEESCHHHHHHHHHHHT
T ss_pred HHcCCEEEEECCCCCcHHHHHHHHHHHH----hCcCCCeEEEEeCCChHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHh
Confidence 9999999999999999999999999986 7 99999999996 6678888889999999999999999999998874
Q ss_pred ---CCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC--------
Q 005798 464 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 531 (676)
Q Consensus 464 ---~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~-------- 531 (676)
+|+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 246 ~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 324 (481)
T 3jz4_A 246 KDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVY-DRFAEKLQQAMSKLHIGDGLDNG 324 (481)
T ss_dssp TTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEGGGH-HHHHHHHHHHHTTCCBSCTTSTT
T ss_pred hcCCceEEecCCCCeEEEcCCCCHHHHHHHHHHHHHHhCCCcccCCcEEEEeHHHH-HHHHHHHHHHHHhccCCCCccCc
Confidence 9999999999999999999999999999999999987 999999999999999 799999999987652
Q ss_pred --------------------------cEE-ecCccc--cc-cc-c-C-----CCCCcccccccCceEEEEEeCCHHHHHH
Q 005798 532 --------------------------VGL-FGGPRA--SK-LL-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 574 (676)
Q Consensus 532 --------------------------~~~-~g~~~~--~~-~~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~deAi~ 574 (676)
+++ +|+... .+ ++ | | ++|++++||+||||++|++|+|+||||+
T Consensus 325 ~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 404 (481)
T 3jz4_A 325 VTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIA 404 (481)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEESCCTTSGGGTSCCCSSEEEEEEECCHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHHHHCCCEEEeCCcccCCCCceeccEEEecCCCCcccccccccCceEEEEEECCHHHHHH
Confidence 223 244321 22 33 5 2 4689999999999999999999999999
Q ss_pred HHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEEEEEEc
Q 005798 575 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 654 (676)
Q Consensus 575 ~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~ 654 (676)
++|+++|||++||||+|.++++++++++++|+|+||++....+..||||.++||+| +++|++|+++||+.|+|+++
T Consensus 405 ~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G----~~~g~~g~~~~t~~k~v~~~ 480 (481)
T 3jz4_A 405 QANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLG----REGSKYGIEDYLEIKYMCIG 480 (481)
T ss_dssp HHHCSSCCSEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCSSSCBCCSGGGEES----CBSHHHHHHTTEEEEEEEEE
T ss_pred HHhcCCCCceEEEECCCHHHHHHHHHhCCeeeEEECCCCCCCCCCCcCCcccCcCC----CCchHHHHHHhhceeEEEEe
Confidence 99999999999999999999999999999999999998877788999999999987 46799999999999999875
No 24
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=100.00 E-value=8.3e-78 Score=676.96 Aligned_cols=401 Identities=18% Similarity=0.203 Sum_probs=344.3
Q ss_pred HHHHHh-CCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 005798 228 IIKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 306 (676)
Q Consensus 228 i~~~~t-g~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~ 306 (676)
+.+|.+ |+.++++...+ .+|+++++++|++||+.|+.+|.++|.++|++++++|++++++|++++++|++++.
T Consensus 55 ~~nP~t~~~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 128 (538)
T 3qan_A 55 SWNPARKDQLVGSVSKAN------QDLAEKAIQSADEAFQTWRNVNPEERANILVKAAAIIRRRKHEFSAWLVHEAGKPW 128 (538)
T ss_dssp EECSSSTTCEEEEEECBC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCH
T ss_pred EECCCCCCcEEEEEcCCC------HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 356788 88899988888 88999999999999999999999999999999999999999999999887765432
Q ss_pred hhchhHHHHHHhhcChHHHHHHHHHHHHHhcc-cc-cccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHH
Q 005798 307 EAGYAKSLVSRLALKPGKISSLAKSIRILADM-EE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 382 (676)
Q Consensus 307 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 382 (676)
.++ ..|+..+++.++++++. .+ ..++..+. ..+...+++++|+|||++|+|| ||. +.++++
T Consensus 129 ----~ea--------~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 193 (538)
T 3qan_A 129 ----KEA--------DADTAEAIDFLEYYARQMIELNRGKEILS---RPGEQNRYFYTPMGVTVTISPWNFALAIMVGTA 193 (538)
T ss_dssp ----HHH--------HHHHHHHHHHHHHHHHHHHHHHTCBCCCC---CTTEEEEEEEEECCEEEEECCSTTTTHHHHHHH
T ss_pred ----HHH--------HHHHHHHHHHHHHHHHHHHHhcCCeeecc---cCCcceeeecCCCcEEEEECCCchHHHHHHHHH
Confidence 122 12567777777777654 22 22333221 1345678899999999999999 584 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHH
Q 005798 383 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 460 (676)
Q Consensus 383 ~~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~ 460 (676)
+|||++||+||+||||.||+|+..|++++.+ + +|+|+||+|+| ++++++.|..||+||+|+||||+++|+.|++
T Consensus 194 a~ALaaGN~VVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~ 269 (538)
T 3qan_A 194 VAPIVTGNTVVLKPASTTPVVAAKFVEVLED----AGLPKGVINYVPGSGAEVGDYLVDHPKTSLITFTGSKDVGVRLYE 269 (538)
T ss_dssp HHHHHTTCEEEEECCTTSHHHHHHHHHHHHH----TTCCTTSEEECCBCTTTTHHHHHHCTTEEEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCccHHHHHHHHHHHHH----hCCCCCeEEEEecCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999986 7 99999999996 6678888889999999999999999999998
Q ss_pred hc---------CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhc
Q 005798 461 ST---------KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE 530 (676)
Q Consensus 461 ~a---------~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~ 530 (676)
.| .||++||||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++
T Consensus 270 ~aa~~~~~~~~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~ 348 (538)
T 3qan_A 270 RAAVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIHKDVY-DEVLEKTVALAKNL 348 (538)
T ss_dssp HHTSCCTTCCSCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEETTTH-HHHHHHHHHHHTTC
T ss_pred HhhhccccccccccEEEecCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCCccCceeEEehHHH-HHHHHHHHHHHHhc
Confidence 76 47999999999999999999999999999999999988 999999999999999 79999999988765
Q ss_pred Cc---------------------------------EE-ecCccc--cccc--c-C-----CCCCcccccccCceEEEEEe
Q 005798 531 GV---------------------------------GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIV 566 (676)
Q Consensus 531 ~~---------------------------------~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~i~~~ 566 (676)
.+ ++ +||... .++| | | ++|++++||+||||++|++|
T Consensus 349 ~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~G~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~V~~~ 428 (538)
T 3qan_A 349 TVGDPTNRDNYMGPVIDEKAFEKIMSYIEIGKKEGRLMTGGEGDSSTGFFIQPTIIADLDPEAVIMQEEIFGPVVAFSKA 428 (538)
T ss_dssp CBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHHSEEEECCCEECSSSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEE
T ss_pred cCCCCCCCCCCCcCccCHHHHHHHHHHHHHHHHCCeEEeCCCcCCCCCceeCCeeeecCCCCChhhCCCcCCcEEEEEEe
Confidence 21 22 244322 2333 5 2 46899999999999999999
Q ss_pred CCHHHHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEc-CCCCC-CCCCcccCcccccccccccccccccchhc
Q 005798 567 DDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHN-ASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEG 644 (676)
Q Consensus 567 ~~~deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN-~~~~~-~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ 644 (676)
+|+||||+++|+++|||++||||+|.++++++++++++|+|+|| .++.. .+.+||||.++||+|. +++|++|+++
T Consensus 429 ~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~~~PfGG~k~SG~G~---~~~G~~gl~~ 505 (538)
T 3qan_A 429 NDFDHALEIANNTEYGLTGAVITRNRAHIEQAKREFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDS---KAGGPDYLAL 505 (538)
T ss_dssp SSHHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHCCCSEEEESSCSCCCCTTTSCBCCEETTBSCC---CBTSTTTGGG
T ss_pred CCHHHHHHHHhcCCCCcEEEEECCCHHHHHHHHHhCCeeEEEEeCCCCCCCCCCCCcCCcCcCCCCc---ccccHHHHHH
Confidence 99999999999999999999999999999999999999999999 55554 6789999999999862 3679999999
Q ss_pred ceeEEEEEEcCce
Q 005798 645 LLTTRWILRGNGH 657 (676)
Q Consensus 645 ft~~k~v~~~~~~ 657 (676)
|++.|+|+++.+.
T Consensus 506 ft~~k~v~~~~~~ 518 (538)
T 3qan_A 506 HMQAKTVSEMYAE 518 (538)
T ss_dssp GEEEEEEEEEC--
T ss_pred hhCeEEEEEecCC
Confidence 9999999987643
No 25
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.3e-78 Score=672.70 Aligned_cols=397 Identities=16% Similarity=0.145 Sum_probs=344.8
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR--RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 306 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~ 306 (676)
.+|.+|+.++++...+ .+++++++++|++||+ .|+.+|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 29 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 102 (495)
T 3b4w_A 29 RCPATGEYVGKVPMAA------AADVDAAVAAARAAFDNGPWPSTPPHERAAVIAAAVKMLAERKDLFTKLLAAETGQPP 102 (495)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHSSTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3567899999988888 8899999999999999 8999999999999999999999999999999988765442
Q ss_pred hhchhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHH
Q 005798 307 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 383 (676)
Q Consensus 307 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~ 383 (676)
. ++. ..|+...++.++++++..+. .+...+. +.+...+++++|+|||++|+|| ||. +.+++++
T Consensus 103 ~----ea~-------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~ 168 (495)
T 3b4w_A 103 T----IIE-------TMHWMGSMGAMNYFAGAADKVTWTETRT---GSYGQSIVSREPVGVVGAIVAWNVPLFLAVNKIA 168 (495)
T ss_dssp H----HHH-------HTTTHHHHHHHHHHHTCGGGSCSEEEEE---ETTEEEEEEEEECCEEEEECCSSSHHHHHHHHHH
T ss_pred H----HHH-------HHHHHHHHHHHHHHHHHHHHhcCCcccC---CCCceEEEEEccCceEEEECCCcchHHHHHHHHH
Confidence 1 221 02466778888888765443 2333221 2234568899999999999999 585 6789999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHHhc
Q 005798 384 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 462 (676)
Q Consensus 384 ~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a 462 (676)
|||++||+||+||||.||+|+.++++++.+ + ||+|+||+|+|+.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 169 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~g~~L~~~~~v~~I~FTGS~~~G~~i~~~a 244 (495)
T 3b4w_A 169 PALLAGCTIVLKPAAETPLTANALAEVFAE----VGLPEGVLSVVPGGIETGQALTSNPDIDMFTFTGSSAVGREVGRRA 244 (495)
T ss_dssp HHHHTTCEEEEECBTTSCHHHHHHHHHHHH----TTCCTTSEEECCBSHHHHHHHTTCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHcCCEEEEecCCccHHHHHHHHHHHHH----hCCCcCeEEEEeCCHHHHHHHHhCCCcCEEEEeCCHHHHHHHHHHh
Confidence 999999999999999999999999999987 7 99999999998656788888899999999999999999999887
Q ss_pred ---CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhc--------
Q 005798 463 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE-------- 530 (676)
Q Consensus 463 ---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~-------- 530 (676)
.||++||||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++
T Consensus 245 a~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~ 323 (495)
T 3b4w_A 245 AEMLKPCTLELGGKSAAIILEDVDLAAAIPMMVFSGVMNAGQGCVNQTRILAPRSRY-DEIVAAVTNFVTALPVGPPSDP 323 (495)
T ss_dssp HHTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGH-HHHHHHHHHHHHHSCBCCTTCT
T ss_pred hhcCCceeecCCCcceEEECCCCCHHHHHHHHHHHHhhcCCCCCCCCeEEEEcccHH-HHHHHHHHHHHHhcCCCCCccC
Confidence 49999999999999999999999999999999999987 999999999999999 79999999998765
Q ss_pred --------------------------CcEE-ecCccc----ccc-c-c-C-----CCCCcccccccCceEEEEEeCCHHH
Q 005798 531 --------------------------GVGL-FGGPRA----SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 571 (676)
Q Consensus 531 --------------------------~~~~-~g~~~~----~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~de 571 (676)
|+++ +||... .++ + | | ++|++++||+||||++|++|+|+||
T Consensus 324 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 403 (495)
T 3b4w_A 324 AAQIGPLISEKQRTRVEGYIAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDNKMTIAQEEIFGPVLAIIPYDTEED 403 (495)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCTTSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHH
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHhCCCEEEecCcccccccCCceeCCEEecCCCCCChhhhcccccceEEEEecCCHHH
Confidence 2233 355432 233 3 5 2 4688999999999999999999999
Q ss_pred HHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEEEE
Q 005798 572 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 651 (676)
Q Consensus 572 Ai~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v 651 (676)
||+++|+++|||++||||+|.++++++++++++|+|+||++. ..+.+||||.+.||+| +++|++|+++|++.|+|
T Consensus 404 Ai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~-~~~~~PfGG~k~SG~G----r~~G~~gl~~~~~~k~v 478 (495)
T 3b4w_A 404 AIAIANDSVYGLAGSVWTTDVPKGIKISQQIRTGTYGINWYA-FDPGSPFGGYKNSGIG----RENGPEGVEHFTQQKSV 478 (495)
T ss_dssp HHHHHHCSSCCSCCEEECSCHHHHHHHHHHSCCSCCEESSCC-CCTTSCBCCSGGGEES----CBSHHHHHHTTEEEEEE
T ss_pred HHHHHhcCCCCeEEEEECCCHHHHHHHHHhCCEeEEEECCCC-CCCCCCCCCCCCCCcC----ccchHHHHHHhcceeEE
Confidence 999999999999999999999999999999999999999987 6778999999999886 46799999999999999
Q ss_pred EEcC
Q 005798 652 LRGN 655 (676)
Q Consensus 652 ~~~~ 655 (676)
.++.
T Consensus 479 ~~~~ 482 (495)
T 3b4w_A 479 LLPM 482 (495)
T ss_dssp ECCT
T ss_pred EEcc
Confidence 8864
No 26
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=100.00 E-value=6.8e-78 Score=672.80 Aligned_cols=397 Identities=16% Similarity=0.156 Sum_probs=343.6
Q ss_pred HHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 005798 230 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR---RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 306 (676)
Q Consensus 230 ~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~ 306 (676)
+|.+|+.++++...+ .+|+++++++|++||+ .|+.+|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 42 nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 115 (501)
T 1bxs_A 42 NPATEEKLCEVEEGD------KEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLF 115 (501)
T ss_dssp CTTTCCEEEEEECCC------HHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCH
T ss_pred CCCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhcccchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 467899999988888 8899999999999999 9999999999999999999999999999999988775542
Q ss_pred hhchhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCCC-hh-hHHHHHH
Q 005798 307 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFESR-PD-ALVQIAS 383 (676)
Q Consensus 307 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~-P~-~~~~~~~ 383 (676)
. ++. ..|+...++.++++++..+. .+...+. ..+...+++|+|+|||++|+||| |. +.+++++
T Consensus 116 ~----e~~-------~~ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a 181 (501)
T 1bxs_A 116 S----NAY-------LMDLGGCIKTLRYCAGWADKIQGRTIPM---DGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIG 181 (501)
T ss_dssp H----HHH-------HTHHHHHHHHHHHHHHHGGGCCEEEECC---SSSEEEEEEEEECCEEEEECCSSSHHHHHHHHHH
T ss_pred H----HHH-------HHHHHHHHHHHHHHHHHHHHhhCCeeec---cCCcceeEEecCCceEEEECCCcchHHHHHHHHH
Confidence 1 221 13667777778877755432 2332221 23456688999999999999995 95 6789999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHh
Q 005798 384 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 461 (676)
Q Consensus 384 ~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~ 461 (676)
|||++||+||+||||.||+|+..|++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.
T Consensus 182 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gv~~vv~g~~~~~g~~L~~~~~v~~I~FTGS~~~G~~i~~~ 257 (501)
T 1bxs_A 182 PALSCGNTVVVKPAEQTPLTALHMGSLIKE----AGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEA 257 (501)
T ss_dssp HHHHTTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHTCTTCSEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCeeeccCCCccHHHHHHHHHHHHH----hCCCcceEEEEecCchHHHHHHHhCCCcCEEEEECCHHHHHHHHHH
Confidence 999999999999999999999999999986 7 99999999996 66788888899999999999999999999987
Q ss_pred cC----CCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC-----
Q 005798 462 TK----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 531 (676)
Q Consensus 462 a~----~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~----- 531 (676)
++ ||++||||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 258 aa~~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~ 336 (501)
T 1bxs_A 258 AGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIY-DEFVRRSVERAKKYVLGNPL 336 (501)
T ss_dssp HHHTTCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTTTTCCTTCCCEEEEEHHHH-HHHHHHHHHHHTCCCBSCTT
T ss_pred hhhccCCcEEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCCCCCEEEEchhHH-HHHHHHHHHHHHhcCCCCCc
Confidence 54 9999999999999999999999999999999999987 999999999999999 799999999887642
Q ss_pred -----------------------------cEEe-cCccc--cccc--c-C-----CCCCcccccccCceEEEEEeCCHHH
Q 005798 532 -----------------------------VGLF-GGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 571 (676)
Q Consensus 532 -----------------------------~~~~-g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~i~~~~~~de 571 (676)
++++ |+... .++| | | ++|++++||+||||++|++|+|+||
T Consensus 337 ~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 416 (501)
T 1bxs_A 337 TPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDD 416 (501)
T ss_dssp STTCCBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCSEECSSSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEECCHHH
T ss_pred ccCCccCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEecCCCCCHHHhcccccceEEEEEeCCHHH
Confidence 2332 44321 2333 5 2 4688999999999999999999999
Q ss_pred HHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEEEE
Q 005798 572 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 651 (676)
Q Consensus 572 Ai~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v 651 (676)
||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.+.||+| +++|++|+++|++.|+|
T Consensus 417 Ai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~pfGG~k~SG~G----~~~G~~~l~~f~~~K~v 492 (501)
T 1bxs_A 417 VIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNG----RELGEYGFHEYTEVKTV 492 (501)
T ss_dssp HHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCCCCCTTSCBCCSGGGEES----CBSHHHHHHTTEEEEEE
T ss_pred HHHHHhcCCCCeeEEEEcCCHHHHHHHHHhcCeeEEEECCCCCCCCCCCCCCcCcCCcC----ccchHHHHHHhhCeeEE
Confidence 99999999999999999999999999999999999999998766678999999999886 46799999999999999
Q ss_pred EEcC
Q 005798 652 LRGN 655 (676)
Q Consensus 652 ~~~~ 655 (676)
.++.
T Consensus 493 ~~~~ 496 (501)
T 1bxs_A 493 TIKI 496 (501)
T ss_dssp EEEC
T ss_pred EEcc
Confidence 8864
No 27
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=100.00 E-value=1.9e-77 Score=664.00 Aligned_cols=404 Identities=17% Similarity=0.150 Sum_probs=329.5
Q ss_pred chHHHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 005798 226 DSIIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 305 (676)
Q Consensus 226 ~~i~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~ 305 (676)
+.+.++.+++.++++...+ .+++++++++|++||+.|+.+|.++|.++|++++++|++++++|++++++|++++
T Consensus 8 ~~~~~~~~~~~i~~v~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 81 (457)
T 3lns_A 8 HHHSSGHIDDDDKHMNYLS------PAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKP 81 (457)
T ss_dssp ---------------CCCC------HHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCC
T ss_pred ccccCCCCCCeeeecCCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 3456677888888888777 8899999999999999999999999999999999999999999999998887654
Q ss_pred HhhchhHHHHHHhhcChHHHHHHHHHHHHHhcccccccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHH
Q 005798 306 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 383 (676)
Q Consensus 306 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~ 383 (676)
. .++...++..+...++++++.++.+.+. ....... ...+...+++++|+|||++|+|| ||. +.+++++
T Consensus 82 ~----~ea~~~ev~~~~~~~~~~a~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~ 152 (457)
T 3lns_A 82 K----DVVDLAEIGAVLHEIDFALAHLDEWVAP-VSVPSPD----IIAPSECYVVQEPYGVTYIIGPFNYPVNLTLTPLI 152 (457)
T ss_dssp H----HHHHHHTHHHHHHHHHHHHHHHHHHTSC-EEECCCG----GGCSCEEEEEEEECCEEEEECCSSSTTHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccccc----cCCCcceEEEeecceEEEEECCCcchHHHHHHHHH
Confidence 3 2333223333344556666666555431 1111111 01234678899999999999999 584 6789999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHHhcC
Q 005798 384 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 463 (676)
Q Consensus 384 ~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~alP~gv~~~v~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~ 463 (676)
|||++||+||+|||+.||+|+.++++++.+ ++|+|+||+|+|+.++++.|.+ ++||+|+||||+++|+.|++.|.
T Consensus 153 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----alP~gvv~vv~g~~~~~~~L~~-~~vd~V~fTGS~~~G~~i~~~aa 227 (457)
T 3lns_A 153 GAIIGGNTCIIKPSETTPETSAVIEKIIAE----AFAPEYVAVIQGGRDENSHLLS-LPFDFIFFTGSPNVGKVVMQAAA 227 (457)
T ss_dssp HHHHTTCEEEEECCTTCHHHHHHHHHHHHH----HCCTTTEEECCCCHHHHHHHTT-SCCSEEEEESCHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEECCCCChHHHHHHHHHHHH----hCCHhhEEEecCCHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHh
Confidence 999999999999999999999999999986 4999999999976566777776 68999999999999999998873
Q ss_pred ---CCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhc---------
Q 005798 464 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE--------- 530 (676)
Q Consensus 464 ---~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~--------- 530 (676)
||+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++
T Consensus 228 ~~l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~p~~~~~gp 306 (457)
T 3lns_A 228 KHLTPVVLELGGKCPLIVLPDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVK-DALLERLVERVKTELPEINSTGK 306 (457)
T ss_dssp TTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGH-HHHHHHHHHHHHHHCCSTTTTCC
T ss_pred hccCceEEECCCCCCCeECCCCCHHHHHHHHHHHHHHhCCCCccCCceEEEcHHHH-HHHHHHHHHHHHhcCCCcccccC
Confidence 9999999999999999999999999999999999988 999999999999999 79999999988775
Q ss_pred ------------------CcEEecCccc-ccc-c-c-C-----CCCCcccccccCceEEEEEeCCHHHHHHHHHc-cCCC
Q 005798 531 ------------------GVGLFGGPRA-SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQ-HGSA 582 (676)
Q Consensus 531 ------------------~~~~~g~~~~-~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~deAi~~aN~-~~~G 582 (676)
+.-++||... .++ + | | ++|++++||+||||++|++|+|+||||+++|+ ++||
T Consensus 307 li~~~~~~rv~~~i~~a~~~~~~gg~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~~g 386 (457)
T 3lns_A 307 LVTERQVQRLVSLLEATQGQVLVGSQADVSKRALSATVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKP 386 (457)
T ss_dssp CSSHHHHHHHHHHHHHCCSEEEECCCEEGGGTEECCEEEESCCTTSGGGSSCCCSSEEEEEEESCHHHHHHHHHHHSCSC
T ss_pred CCCHHHHHHHHHHHHhcCCeEEeCCccCCCCceeCCEEEecCCCCChhhcCcccCcEEEEEEeCCHHHHHHHHHcCCCCC
Confidence 2223455432 233 3 5 2 46899999999999999999999999999999 9999
Q ss_pred ceeEEEecCHHHHHHHHhccCeeeEEEcCCCC--CCCCCcccCcccccccccccccccccchhcceeEEEEEEc
Q 005798 583 HTDCIVAEDQKVAETFLCQVDSAAVFHNASTR--FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 654 (676)
Q Consensus 583 L~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~--~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~ 654 (676)
|++||||+|.++++++++++++|+|+||++.. ..+.+||||.++||+| +++|++|+++||+.|+|++.
T Consensus 387 L~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~~PfGG~k~SG~G----~~~g~~~~~~f~~~k~v~~~ 456 (457)
T 3lns_A 387 LAVYVFGKDMDVAKGIINQIQSGDAQVNGVMLHAFSPYLPFGGIGASGMG----EYHGHFSYLTFTHKKSVRIV 456 (457)
T ss_dssp SEEEEECSCHHHHHHHHHTSCCSEEEESCCSGGGGCTTSCBCCCGGGEEC----CBSHHHHHHHTEEEEEEEEC
T ss_pred eEEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCCCcCCcCcCCCC----CCchHHHHHHhhCeeEEEeC
Confidence 99999999999999999999999999999753 3578899999999986 36799999999999999863
No 28
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-77 Score=672.80 Aligned_cols=398 Identities=16% Similarity=0.169 Sum_probs=348.1
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 47 ~nP~tg~~i~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 118 (515)
T 2d4e_A 47 LDPATNEVLGVAARGG------EREVDRAAKAAHEAFQRWSRTKAKERKRYLLRIAELIEKHADELAVMECLDAGQVL-- 118 (515)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 5678899999988888 88999999999999999999999999999999999999999999999887765432
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
.++ ..|+..+++.++++++..+. .+...+.. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 119 --~ea--------~~ev~~~~~~l~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 186 (515)
T 2d4e_A 119 --RIV--------RAQVARAAENFAFYAEYAEHAMEDRTFPV--DRDWLYYTVRVPAGPVGIITPWNAPLMLSTWRIAPA 186 (515)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHTTGGGTTCEEECCB--TTTEEEEEEEEECCCEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEEecCCceEEECCCCchhhhhhhhhhHH
Confidence 122 13677888899998876543 34333211 2345678899999999999999 694 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhcC
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 463 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~ 463 (676)
|++||+||+||||.||+|+..+++++.+ + +|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.|.
T Consensus 187 LaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~I~~~aa 262 (515)
T 2d4e_A 187 LAFGNTVVLKPAEWSPFTATKLAEILKE----ADLPPGVFNLVQGFGEEAGAALVAHPLVPLLTLTGETETGKIVMRNAA 262 (515)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHG
T ss_pred HHcCCeeeecCCCCcHHHHHHHHHHHHH----hCCCcCeEEEEeCCchHHHHHHHhCCCcCEEEEeCcHHHHHHHHHHHh
Confidence 9999999999999999999999999986 7 99999999996 5678888889999999999999999999998874
Q ss_pred ---CCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC--------
Q 005798 464 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 531 (676)
Q Consensus 464 ---~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~-------- 531 (676)
||+++|||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 263 ~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~ 341 (515)
T 2d4e_A 263 DHLKRLSPELGGKSPALVFADADLERALDAVVFQIFSFNGERCTASSRLLVEEKIF-EDFVGKVVERARAIRVGHPLDPE 341 (515)
T ss_dssp GGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEEHHHH-HHHHHHHHHHHHHCCBCCTTSTT
T ss_pred hcCCceEecCCCcCeEEEcCCCCHHHHHHHHHHHHHhcCCCCCCCCeEEEEehhHH-HHHHHHHHHHHhhcccCCccccc
Confidence 9999999999999999999999999999999999987 999999999999999 799999999987652
Q ss_pred --------------------------cEE-ecCccc----------cccc--c-C----CCCCcccccccCceEEEEEeC
Q 005798 532 --------------------------VGL-FGGPRA----------SKLL--Q-I----PETRLFHHEYNSMVCTVEIVD 567 (676)
Q Consensus 532 --------------------------~~~-~g~~~~----------~~~~--p-v----~~~~~~~eE~FGPVl~i~~~~ 567 (676)
.++ +||... .++| | | ++|++++||+||||++|++|+
T Consensus 342 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~~~g~~~~PTvl~~~~~~~i~~eEiFGPVl~v~~~~ 421 (515)
T 2d4e_A 342 TEVGPLIHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLLPTVFVGENHMKIAQEEIFGPVLVAIPFK 421 (515)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCBCTTSCBCTTTTCBCCEEEECCTTSHHHHSCCCSSEEEEEEES
T ss_pred CccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCccccccccccccCCCceeCCEEEeCCCCChhhhccccCCceEEEeeC
Confidence 222 355331 2333 5 3 357899999999999999999
Q ss_pred CHHHHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhccee
Q 005798 568 DVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLT 647 (676)
Q Consensus 568 ~~deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~ 647 (676)
|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++|++
T Consensus 422 ~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~~~~ 497 (515)
T 2d4e_A 422 DEEEALRKANDTKYGLAAYVFTRDLERAHRLALELEAGMVYLNSHNVRHLPTPFGGVKGSGDR----REGGTYALDFYTD 497 (515)
T ss_dssp SHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCSSEEEESSSCCCCTTSCBCCSGGGBCS----CBSHHHHHHHHEE
T ss_pred CHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCCCCcCCCCCC----ccchHHHHHHhCc
Confidence 999999999999999999999999999999999999999999998777788999999999986 3679999999999
Q ss_pred EEEEEEcC
Q 005798 648 TRWILRGN 655 (676)
Q Consensus 648 ~k~v~~~~ 655 (676)
.|+|.++.
T Consensus 498 ~K~v~~~~ 505 (515)
T 2d4e_A 498 LKTIALPL 505 (515)
T ss_dssp EEEEEEES
T ss_pred eeEEEEcC
Confidence 99998864
No 29
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=100.00 E-value=3.5e-77 Score=665.95 Aligned_cols=397 Identities=16% Similarity=0.180 Sum_probs=345.2
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+++++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 31 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 102 (487)
T 2w8n_A 31 QDPASGAALGMVADCG------VREARAAVRAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPL-- 102 (487)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4577899999988888 88999999999999999999999999999999999999999999999988775542
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
.++ ..|+..+++.++++++..+. .+...+.. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 103 --~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 170 (487)
T 2w8n_A 103 --KEA--------HGEILYSAFFLEWFSEEARRVYGDIIHTP--AKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGAA 170 (487)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHGGGCCCEEECCS--CTTCEEEEEEEECCEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEEecceEEEEECCCcchHHHHHHHHHHH
Confidence 122 13577788888887765432 34332211 1345678899999999999999 485 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEec---C-CChhhhhhcCCCCccEEEeecCHHHHHHHHH
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVT---S-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 460 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~---~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~ 460 (676)
|++||+||+|||+.||+|+..|++++.+ + ||+|+||+|+ | +.++++.|..||+||+|+||||+++|+.|++
T Consensus 171 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~~~~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~ 246 (487)
T 2w8n_A 171 LAAGCTVVVKPAEDTPFSALALAELASQ----AGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLH 246 (487)
T ss_dssp HHHTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCCCHHHHHHHHHHHTTCTTEEEEEEEECHHHHHHHHH
T ss_pred HHcCCEEEEECCCcchHHHHHHHHHHHH----hCCCCCeEEEEecCCCCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999986 7 9999999999 7 5667888889999999999999999999998
Q ss_pred hc---CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHh-cC----
Q 005798 461 ST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQH-EG---- 531 (676)
Q Consensus 461 ~a---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~-~~---- 531 (676)
.+ .||+++|||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|++++++ +.
T Consensus 247 ~aa~~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~~G~p 325 (487)
T 2w8n_A 247 HAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIH-DAFVKAFAEAMKKNLRVGNG 325 (487)
T ss_dssp HHHTTTCEEEEEECEEEEEEECTTSCHHHHHHHHHHHHTCCCSCCCSEEEEEEEEHHHH-HHHHHHHHHHHHHHCCBSCT
T ss_pred HHhccCCcEEEecCCCCeEEECCCCCHHHHHHHHHHHHHhCCCCccccCCEEEEcccHH-HHHHHHHHHHHHhhcccCCc
Confidence 87 59999999999999999999999999999999999987 999999999999999 7999999999888 52
Q ss_pred ------------------------------cEEe-cCccc-cc--cc-c-C-----CCCCcccccccCceEEEEEeCCHH
Q 005798 532 ------------------------------VGLF-GGPRA-SK--LL-Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 570 (676)
Q Consensus 532 ------------------------------~~~~-g~~~~-~~--~~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~d 570 (676)
+++. |+... .+ ++ | | ++|++++||+||||++|++|+|+|
T Consensus 326 ~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gg~~~~~g~~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~~ 405 (487)
T 2w8n_A 326 FEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEE 405 (487)
T ss_dssp TSTTCCBCCCSSHHHHHHHHHHHHHHHTTTCEEEECCSBCTTCTTCBCCEEEEEECGGGGTTCTTCCSSEEEEEEESCHH
T ss_pred ccccCcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCCCceECCEEEecCCCcchhhhcccccceEEEEEeCCHH
Confidence 2332 54432 23 44 5 2 368999999999999999999999
Q ss_pred HHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEEE
Q 005798 571 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 650 (676)
Q Consensus 571 eAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~ 650 (676)
|||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.+.||+| +++|++|+++|++.|+
T Consensus 406 eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~~~SG~G----~~~G~~~l~~f~~~k~ 481 (487)
T 2w8n_A 406 EAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLG----REGSKYGIDEYLELKY 481 (487)
T ss_dssp HHHHHHTCTTCCSEEEEECCCHHHHHHHHHHSCSSEEEESCSCCCCTTSCBCCSGGGEES----CBSTTTGGGGGEEEEE
T ss_pred HHHHHHhCCCCCceEEEeCCCHHHHHHHHHhCCeeeEEEcCCCCCCCCCCCCCCCCCCcC----CCchHHHHHHhcCccE
Confidence 999999999999999999999999999999999999999998777778999999999886 4679999999999999
Q ss_pred EEEc
Q 005798 651 ILRG 654 (676)
Q Consensus 651 v~~~ 654 (676)
|.++
T Consensus 482 v~~~ 485 (487)
T 2w8n_A 482 VCYG 485 (487)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9874
No 30
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=100.00 E-value=3.4e-77 Score=668.08 Aligned_cols=401 Identities=16% Similarity=0.160 Sum_probs=344.6
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++..|++++..
T Consensus 42 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 114 (500)
T 2j6l_A 42 YCPANNEPIARVRQAS------VADYEETVKKAREAWKIWADIPAPKRGEIVRQIGDALREKIQVLGSLVSLEMGKILV- 114 (500)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCHH-
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-
Confidence 4577889899988887 889999999999999999999999999999999999999999999988766543321
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
++ ..|+..+++.++++++..+. .+...+. ...+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 115 ---ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 181 (500)
T 2j6l_A 115 ---EG--------VGEVQEYVDICDYAVGLSRMIGGPILPS--ERSGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAIA 181 (500)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHTTTCCCBEECC--SSTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--cCCCceeEEEEecccEEEEECCCcchhhHHHHHHHHH
Confidence 21 23667777778877654432 2332221 11234457789999999999999 495 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHHhc--
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 462 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a-- 462 (676)
|++||+||+|||+.||+|+.++++++.++|.++ +|+|+||+|+|+.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 182 LaaGN~VVlKps~~tp~t~~~l~~l~~~al~~aGlP~gvv~vv~g~~~~g~~L~~~~~vd~I~FTGS~~~g~~i~~~aa~ 261 (500)
T 2j6l_A 182 MICGNVCLWKGAPTTSLISVAVTKIIAKVLEDNKLPGAICSLTCGGADIGTAMAKDERVNLLSFTGSTQVGKQVGLMVQE 261 (500)
T ss_dssp HHTTCEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCGGGEEEECCSHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHH
T ss_pred HHhCCEEEEECCCccHHHHHHHHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHhcCCCcCEEEEECCHHHHHHHHHHhcc
Confidence 999999999999999999999999999998889 99999999998667888888899999999999999999999877
Q ss_pred -CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC---------
Q 005798 463 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG--------- 531 (676)
Q Consensus 463 -~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~--------- 531 (676)
.||++||||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 262 ~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~~ 340 (500)
T 2j6l_A 262 RFGRSLLELGGNNAIIAFEDADLSLVVPSALFAAVGTAGQRCTTARRLFIHESIH-DEVVNRLKKAYAQIRVGNPWDPNV 340 (500)
T ss_dssp TTCEEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTCEEEEEEETTTH-HHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred CCCceEEEcCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCcCCCcEEEEcHHHH-HHHHHHHHHHhhhcccCCcccCCC
Confidence 49999999999999999999999999999999999987 999999999999999 799999999988752
Q ss_pred -------------------------cEE-ecCccc--cc-cc-c-C-----CCCCcccccccCceEEEEEeCCHHHHHHH
Q 005798 532 -------------------------VGL-FGGPRA--SK-LL-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 575 (676)
Q Consensus 532 -------------------------~~~-~g~~~~--~~-~~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~deAi~~ 575 (676)
.++ +||... .+ ++ | | ++|++++||+||||++|++|+|+||||++
T Consensus 341 ~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 420 (500)
T 2j6l_A 341 LYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFKFQNEEEVFAW 420 (500)
T ss_dssp CBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSSCBCCEEEESCCTTCHHHHSCCSSSEEEEEEECCHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCCEEcCEEEECCCCcChhhcCcccCceEEEEeeCCHHHHHHH
Confidence 223 354331 23 33 5 2 46899999999999999999999999999
Q ss_pred HHccCCCceeEEEecCHHHHHHHH--hccCeeeEEEcCCCCC-CCCCcccCcccccccccccccccccchhcceeEEEEE
Q 005798 576 IHQHGSAHTDCIVAEDQKVAETFL--CQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 652 (676)
Q Consensus 576 aN~~~~GL~a~vft~d~~~a~~~~--~~l~~G~v~iN~~~~~-~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~ 652 (676)
+|+++|||++||||+|.+++++++ +++++|+|+||++... ....||||.+.||+| +++|.+|+++|++.|+|+
T Consensus 421 aN~~~~gL~a~v~t~d~~~a~~~~~~~~~~~G~V~vN~~~~~~~~~~PfGG~k~SG~G----~~~g~~~~~~f~~~k~v~ 496 (500)
T 2j6l_A 421 NNEVKQGLSSSIFTKDLGRIFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKHTGGG----RESGSDAWKQYMRRSTCT 496 (500)
T ss_dssp HHTSSCCSEEEEECCCHHHHHHHHSTTSCCSSEEEESSCTTCCCTTSEECCSGGGCSC----CEESTTGGGGGEEEEEEE
T ss_pred HhCCCCCcEEEEECCCHHHHHHHHhhccCCeeEEEECCCCccCCCCCCcCCcCCCCCC----CcchHHHHHHhhceEEEE
Confidence 999999999999999999999999 7799999999986543 467899999999886 367999999999999998
Q ss_pred Ec
Q 005798 653 RG 654 (676)
Q Consensus 653 ~~ 654 (676)
++
T Consensus 497 ~~ 498 (500)
T 2j6l_A 497 IN 498 (500)
T ss_dssp EE
T ss_pred Ee
Confidence 75
No 31
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=100.00 E-value=6.9e-77 Score=663.26 Aligned_cols=397 Identities=18% Similarity=0.204 Sum_probs=345.9
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 27 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 99 (479)
T 2imp_A 27 VNPATEAVISRIPDGQ------AEDARKAIDAAERAQPEWEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQQ- 99 (479)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 4577899999988888 889999999999999999999999999999999999999999999999887654321
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
++ ..|+..+++.++++++..+. .+...+.. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 100 ---ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 166 (479)
T 2imp_A 100 ---LA--------EVEVAFTADYIDYMAEWARRYEGEIIQSD--RPGENILLFKRALGVTTGILPWNFPFFLIARKMAPA 166 (479)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHTTTTTCCCEEECCS--STTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhhCCccccC--CCCceeEEEEeccceEEEECCCchHHHHHHHHHHHH
Confidence 22 24788889999998876543 34332211 1244678899999999999999 585 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhcC
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 463 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~ 463 (676)
|++||+||+|||+.||+|+..+++++.+ + ||+|+||+|+| ++++++.|..||+||+|+||||+++|+.|++.+.
T Consensus 167 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~~aa 242 (479)
T 2imp_A 167 LLTGNTIVIKPSEFTPNNAIAFAKIVDE----IGLPRGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKIMATAA 242 (479)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTEEEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCccchHHHHHHHHHHHH----hCCCcCeEEEEECCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHHHHh
Confidence 9999999999999999999999999986 7 99999999996 5667888888999999999999999999998773
Q ss_pred ---CCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhc---------
Q 005798 464 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE--------- 530 (676)
Q Consensus 464 ---~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~--------- 530 (676)
||+++|||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++
T Consensus 243 ~~~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p~~~~ 321 (479)
T 2imp_A 243 KNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVYVQKGIY-DQFVNRLGEAMQAVQFGNPAERN 321 (479)
T ss_dssp TTTCEEEEECCCCCEEEECTTSCHHHHHHHHHTTSSTTTTCCSSSCSEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTTCS
T ss_pred ccCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhcCCCcCcCCcEEEEehhhH-HHHHHHHHHHHHhcccCCccccC
Confidence 9999999999999999999999999999999999988 999999999999999 79999999988754
Q ss_pred --------------------------CcEE-ecCccc--ccc-c-c-C-----CCCCcccccccCceEEEEEeCCHHHHH
Q 005798 531 --------------------------GVGL-FGGPRA--SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 573 (676)
Q Consensus 531 --------------------------~~~~-~g~~~~--~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~deAi 573 (676)
|.++ +|+... .++ + | | ++|++++||+||||++|++|+|+||||
T Consensus 322 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~Ptvl~~v~~~~~~~~eEiFGPVl~v~~~~~~~eAi 401 (479)
T 2imp_A 322 DIAMGPLINAAALERVEQKVARAVEEGARVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAI 401 (479)
T ss_dssp SCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCCCSSSCCCCCEEEESCCTTSGGGGSCCCSSEEEEEEESSHHHHH
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCceECCEEEeCCCCCCHHHhCccCCceEEEEeeCCHHHHH
Confidence 2233 355431 233 3 5 2 468899999999999999999999999
Q ss_pred HHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEEEEEE
Q 005798 574 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 653 (676)
Q Consensus 574 ~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~ 653 (676)
+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++|++.|+|.+
T Consensus 402 ~~aN~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G----~~~g~~~l~~~~~~k~v~~ 477 (479)
T 2imp_A 402 SMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIG----GADGKHGLHEYLQTQVVYL 477 (479)
T ss_dssp HHHHCSSEESEEEEECCCHHHHHHHHHHCCSSEEEESSCCCCCTTSCBCCEETTEES----CBSHHHHHHTTEEEEEEEE
T ss_pred HHHhcCCCCeeEEEECCCHHHHHHHHHhCCEeEEEECCCCCCCCCCCCCCCCCCCCC----CCchHHHHHHhcCeeEEEe
Confidence 999999999999999999999999999999999999997766778999999999986 4679999999999999976
Q ss_pred c
Q 005798 654 G 654 (676)
Q Consensus 654 ~ 654 (676)
+
T Consensus 478 ~ 478 (479)
T 2imp_A 478 Q 478 (479)
T ss_dssp E
T ss_pred c
Confidence 3
No 32
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=100.00 E-value=3.1e-77 Score=668.06 Aligned_cols=400 Identities=15% Similarity=0.155 Sum_probs=346.0
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR-RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 307 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~-~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~ 307 (676)
.+|.+|+.++++...+ .+|+++++++|++||+ .|+.+|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 37 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 109 (501)
T 1uxt_A 37 KSPIDLATIAKVISPS------REEVERTLDVLFKRGRWSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPK- 109 (501)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHTHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH-
Confidence 3467899999988888 8899999999999999 9999999999999999999999999999999887765432
Q ss_pred hchhHHHHHHhhcChHHHHHHHHHHHHHhcccccc-cccccccccCC--CcEEEEEeeceeEEEEEcCC-Chh-hHHHHH
Q 005798 308 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELAD--GLILEKTSCPLGVLLIVFES-RPD-ALVQIA 382 (676)
Q Consensus 308 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 382 (676)
.++ ..|+..+++.++++++..+.. +...+...... +...+++++|+|||++|+|| ||. +.++++
T Consensus 110 ---~ea--------~~Ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~ 178 (501)
T 1uxt_A 110 ---SAA--------VGEVKAAVDRLRLAELDLKKIGGDYIPGDWTYDTLETEGLVRREPLGVVAAITPFNYPLFDAVNKI 178 (501)
T ss_dssp ---HHH--------HHHHHHHHHHHHTGGGGGGGTCCEEEESTTSSTTTTEEEEEEEEECSEEEEECCTTSTTHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccccccCCCcCceEEEEEeeccEEEEECCCccHHHHHHHHH
Confidence 122 136788889999888765433 43322110012 33678899999999999999 584 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHHh
Q 005798 383 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 461 (676)
Q Consensus 383 ~~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~ 461 (676)
+|||++||+||+||||.||+|+.++++++.+ + +|+|+||+|+|..++++.|..||+||+|+||||+++|+.|++.
T Consensus 179 ~~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~g~~L~~~~~vd~I~FTGS~~~G~~i~~~ 254 (501)
T 1uxt_A 179 TYSFIYGNAVVVKPSISDPLPAAMAVKALLD----AGFPPDAIALLNLPGKEAEKIVADDRVAAVSFTGSTEVGERVVKV 254 (501)
T ss_dssp HHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHHcCCEEEEeCCCCchHHHHHHHHHHHH----hCCCcCeEEEEeCCcHHHHHHHhCCCcCEEEEeCcHHHHHHHHHh
Confidence 9999999999999999999999999999986 7 9999999999633788889999999999999999999999998
Q ss_pred cC-CCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC--------
Q 005798 462 TK-IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 531 (676)
Q Consensus 462 a~-~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~-------- 531 (676)
++ ||+++|||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 255 aal~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~ 333 (501)
T 1uxt_A 255 GGVKQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVY-GKLVEEVAKRLSSLRVGDPRDPT 333 (501)
T ss_dssp HCSSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred cCCCeEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhcCCCCCCcCCcEEEeccchH-HHHHHHHHHHHHhccCCCccccC
Confidence 85 9999999999999999999999999999999999987 999999999999999 799999999988652
Q ss_pred --------------------------cEE-ecCcccc-ccc-c-C--------CCCCcccccccCceEEEEEeCCHHHHH
Q 005798 532 --------------------------VGL-FGGPRAS-KLL-Q-I--------PETRLFHHEYNSMVCTVEIVDDVRAAI 573 (676)
Q Consensus 532 --------------------------~~~-~g~~~~~-~~~-p-v--------~~~~~~~eE~FGPVl~i~~~~~~deAi 573 (676)
+++ +|+.... .++ | | ++|++++||+||||++|++|+|+||||
T Consensus 334 ~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~g~~~~~Ptvl~~v~~~~~~~~i~~eEiFGPVl~v~~~~~~deAi 413 (501)
T 1uxt_A 334 VDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRRLGPTYVQPTFVEAPADRVKDMVLYKREVFAPVALAVEVKDLDQAI 413 (501)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCBCSSSCBCCEEEECCHHHHTTSHHHHSCCCSSEEEEEEESSHHHHH
T ss_pred CcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCceECCEEEeCCCCCCCcCHHHhCcccCceEEEEeeCCHHHHH
Confidence 223 3443322 233 5 2 246899999999999999999999999
Q ss_pred HHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCC-CCCCCCCcccCcccccccccccccccccchhcceeEEEEE
Q 005798 574 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNAS-TRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 652 (676)
Q Consensus 574 ~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~-~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~ 652 (676)
+++|+++|||++||||+|.++++++++++++|+|+||++ +...+.+||||.++||+| +++|++|+++|++.|+|.
T Consensus 414 ~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~V~iN~~~~~~~~~~PfGG~k~SG~G----~~~G~~~l~~f~~~k~v~ 489 (501)
T 1uxt_A 414 ELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIYINDMPRHGIGYYPFGGRKKSGVF----REGIGYAVEAVTAYKTIV 489 (501)
T ss_dssp HHHHTSSEESEEEEECCCHHHHHHHHHHCCSSEEEETSCCCCTTSSSCBCCEETTEES----CBSTTTTHHHHEEEEEEE
T ss_pred HHHhcCCCCcEEEEeCCCHHHHHHHHHhCCEeeEEEeCCCCCCCCCCCCCCcCCCCCC----ccChHHHHHHhCceeEEE
Confidence 999999999999999999999999999999999999987 556678999999999986 467999999999999998
Q ss_pred EcC
Q 005798 653 RGN 655 (676)
Q Consensus 653 ~~~ 655 (676)
++.
T Consensus 490 ~~~ 492 (501)
T 1uxt_A 490 FNY 492 (501)
T ss_dssp EEC
T ss_pred Eec
Confidence 864
No 33
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=100.00 E-value=6.1e-77 Score=665.90 Aligned_cols=399 Identities=16% Similarity=0.186 Sum_probs=347.0
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+++++++++|++||+.|+.++.++|.++|++++++|++|+++|++++.+|++++..
T Consensus 27 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~- 99 (490)
T 2ve5_A 27 INPANGEVLAKVQRAS------REDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLA- 99 (490)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 4577899999988888 889999999999999999999999999999999999999999999999887654421
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
++. ..|+...++.++++++..+. .+...+. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 100 ---ea~-------~~ev~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~~~~A 166 (490)
T 2ve5_A 100 ---ETR-------SVDIVTGADVLEYYAGLVPAIEGEQIPL---RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPA 166 (490)
T ss_dssp ---HHT-------TTHHHHHHHHHHHHHHHGGGCCEEEEEE---ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred ---HHh-------HHHHHHHHHHHHHHHHHHHHhcCccccC---CCCceeeEeeccccEEEEECCCcchHHHHHHHHHHH
Confidence 211 12677777888887765432 2332221 2355678899999999999999 585 567999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 462 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a- 462 (676)
|++||+||+|||+.||+|+.+|++++.+ + +|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 167 LaaGN~vVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~~L~~~p~vd~v~fTGS~~~g~~i~~~a~ 242 (490)
T 2ve5_A 167 LAAGNAMIFKPSEVTPLTALKLAEIYTE----AGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASAS 242 (490)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEeCCChHHHHHHHhCCCcCEEEEeCCcHHHHHHHHhch
Confidence 9999999999999999999999999987 7 99999999996 677888899999999999999999999999877
Q ss_pred ---CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC-------
Q 005798 463 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 531 (676)
Q Consensus 463 ---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~------- 531 (676)
.||++||||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 243 a~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~d~ 321 (490)
T 2ve5_A 243 SSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQ-ARFEAKVLERVQRIRLGDPQDE 321 (490)
T ss_dssp HHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred hccccceEEEcCCCceeEECCCCCHHHHHHHHHHHHHhcCCCCccCCCeEEEcHHHH-HHHHHHHHHHHHhccCCCCCCC
Confidence 49999999999999999999999999999999999988 999999999999999 799999999988652
Q ss_pred ---------------------------cEE-ecCccc------ccc-c-c-C-----CCCCcccccccCceEEEEEeCCH
Q 005798 532 ---------------------------VGL-FGGPRA------SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDV 569 (676)
Q Consensus 532 ---------------------------~~~-~g~~~~------~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~ 569 (676)
.++ +|+... .++ + | | ++|++++||+||||++|++|+|+
T Consensus 322 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPvl~v~~~~~~ 401 (490)
T 2ve5_A 322 NTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDE 401 (490)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESCH
T ss_pred CCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccCCCCceEccEEEecCCCCCccccceeeCCeEEEEEeCCH
Confidence 122 344331 223 3 5 2 46899999999999999999999
Q ss_pred HHHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEE
Q 005798 570 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 649 (676)
Q Consensus 570 deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k 649 (676)
||||+++|+++|||++||||+|.++++++++++++|+|+||+.....+.+||||.+.||+| +++|.+|+++|++.|
T Consensus 402 deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~pfGG~k~SG~G----~~~G~~~~~~f~~~k 477 (490)
T 2ve5_A 402 DEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVG----RENGLTTLAHYTRIK 477 (490)
T ss_dssp HHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEES----CBSHHHHHHTTEEEE
T ss_pred HHHHHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCCCCCCCC----CcchHHHHHHhheeE
Confidence 9999999999999999999999999999999999999999998777788999999999986 357999999999999
Q ss_pred EEEEcCc
Q 005798 650 WILRGNG 656 (676)
Q Consensus 650 ~v~~~~~ 656 (676)
+|+++.+
T Consensus 478 ~v~~~~~ 484 (490)
T 2ve5_A 478 SVQVELG 484 (490)
T ss_dssp EEEEECS
T ss_pred EEEEccC
Confidence 9998765
No 34
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=100.00 E-value=2.5e-77 Score=667.55 Aligned_cols=394 Identities=16% Similarity=0.168 Sum_probs=334.6
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|+++++.|++++..
T Consensus 46 ~nP~tg~~i~~v~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 118 (497)
T 3i44_A 46 IDPSTEEACAVISLGS------TRDADKAINAAKKAFQTWKTTSPHERLGFVEKILEIYEKRSSDMAKTISMEMGAPID- 118 (497)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 5678899999988888 889999999999999999999999999999999999999999999999887654421
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhcccccccccccccccCCCcEEEEE-eeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKT-SCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
++.. .|+...++.++++++..+... .+. ....+...+++ ++|+|||++|+|| ||. +.+++++||
T Consensus 119 ---~a~~-------~ev~~~~~~~~~~a~~~~~~~--~~~-~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~A 185 (497)
T 3i44_A 119 ---MALN-------AQTATGSSHIRNFIKAYKEFS--FQE-ALIEGNEQAILHYDAIGVVGLITPWNWPMNQVTLKVIPA 185 (497)
T ss_dssp ---HHHH-------THHHHHHHHHHHHHHHHHHCC--SEE-ESSTTCSSCEEEEEECCEEEEECCSSSHHHHHHHHHHHH
T ss_pred ---HHHH-------HHHHHHHHHHHHHHHHhhccc--ccc-cccCCceeEEEeecCceEEEEECCCcchHHHHHHHHHHH
Confidence 2211 255666666666654321110 000 00112334566 9999999999999 585 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 462 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a- 462 (676)
|++||+||+|||+.||+|+..+++++.+ + +|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 186 LaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvvnvv~g~~~~~g~~L~~hp~v~~I~FTGS~~~G~~i~~~aa 261 (497)
T 3i44_A 186 LLAGCTMVLKPSEIAPLSAMLFAEILDE----AALPSGVFNLINGDGANVGSYLSAHPDLEMISFTGSTRAGKDISKNAS 261 (497)
T ss_dssp HHHTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCcccHHHHHHHHHHHHH----hCcCCCeEEEEeCCChHHHHHHHhCCCcCEEEEeCcHHHHHHHHHHHh
Confidence 9999999999999999999999999986 7 99999999996 667888888999999999999999999999887
Q ss_pred --CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC--------
Q 005798 463 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 531 (676)
Q Consensus 463 --~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~-------- 531 (676)
.||+++|||||||+||++||| |.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 262 ~~~k~v~lElGGk~p~IV~~dAD-~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~vG~p~~~~ 339 (497)
T 3i44_A 262 NTLKRVCLELGGKGANIIFADAD-IDALQRGVRHCFYNSGQSCNAPTRMLVEQAIY-DKAIKTAKDIAEKTQVGPGHQTG 339 (497)
T ss_dssp TTTCEEEEECCCCCEEEECTTSC-TTHHHHHHHHHHGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHHCCBCCTTSCS
T ss_pred hcCCceeeccCCCCceEECCChh-HHHHHHHHHHHHhcCCCCcccCCEEEEcHHHH-HHHHHHHHHHHHhccCCCCCCCC
Confidence 399999999999999999999 9999999999999987 999999999999999 799999999988652
Q ss_pred --------------------------cEE-ecCc-cc----ccc-c-c-C-----CCCCcccccccCceEEEEEeCCHHH
Q 005798 532 --------------------------VGL-FGGP-RA----SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 571 (676)
Q Consensus 532 --------------------------~~~-~g~~-~~----~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~de 571 (676)
+++ +|+. .. .++ + | | ++|++++||+||||++|++|+|+||
T Consensus 340 ~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 419 (497)
T 3i44_A 340 NHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADVKPHMRIFREEIFGPVLSLLPFNTEDE 419 (497)
T ss_dssp SCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSSCCTTCCSSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHH
T ss_pred CccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCcCCCcCCCCcEECCEEEEeCCCCCHHHcCcccCceEEEEecCCHHH
Confidence 223 3442 21 233 3 5 2 4689999999999999999999999
Q ss_pred HHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEEEE
Q 005798 572 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 651 (676)
Q Consensus 572 Ai~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v 651 (676)
||+++|+++|||++||||+|.++++++++++++|+|+||. ....+..||||.+.||+| +++|++|+++||+.|+|
T Consensus 420 Ai~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~iN~-~~~~~~~PfGG~k~SG~G----r~~G~~gl~~~t~~K~v 494 (497)
T 3i44_A 420 AVTLANDTEYGLTNYIQSQDRSKCRRIAAQVRSGMVEVNG-HELPGGSYFGGVKFSGRA----REGGLWGIKEFLDTKAI 494 (497)
T ss_dssp HHHHHHCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEETT-CCCCTTCCBCCSGGGCCC----CBSHHHHHHTTEEEEEE
T ss_pred HHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCcCeEEECC-CCCCCCCCcCCcCcCcCC----ccchHHHHHHhcceeEE
Confidence 9999999999999999999999999999999999999995 445678899999999886 46799999999999998
Q ss_pred EE
Q 005798 652 LR 653 (676)
Q Consensus 652 ~~ 653 (676)
+.
T Consensus 495 ~~ 496 (497)
T 3i44_A 495 SY 496 (497)
T ss_dssp SC
T ss_pred Ee
Confidence 54
No 35
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=100.00 E-value=1e-76 Score=658.70 Aligned_cols=386 Identities=21% Similarity=0.231 Sum_probs=325.5
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChHHHHHHHH
Q 005798 251 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 330 (676)
Q Consensus 251 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 330 (676)
.+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++.. ++...++..+..+++++++
T Consensus 17 ~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~----ea~~~ev~~~~~~~~~~~~ 92 (469)
T 3sza_A 17 MSKISEAVKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNEW----NAYYEEVVYVLEEIEYMIQ 92 (469)
T ss_dssp -CHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH----HHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH----HHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999999999999988765432 3322233334556777777
Q ss_pred HHHHHhcccccccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHHHHhCCEEEEeCCcchHHHHHHHH
Q 005798 331 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAILH 408 (676)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~ 408 (676)
.++.|+... +.+.... ..+...+++++|+|||++|+|| ||. +.+++++|||++||+||+||||.||+|+.+++
T Consensus 93 ~~~~~~~~~-~~~~~~~----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~ 167 (469)
T 3sza_A 93 KLPEWAADE-PVEKTPQ----TQQDELYIHSEPLGVVLVIGTWNYPFNLTIQPMVGAIAAGNAVVLKPSELSENMASLLA 167 (469)
T ss_dssp HHHHHHSCE-ECCCCGG----GTTSEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHH
T ss_pred HHHhhhccc-ccCcccc----CCCccceeeccCCCEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHH
Confidence 777665321 1111111 1234577889999999999999 584 67899999999999999999999999999999
Q ss_pred HHHHHhcccccCcCceEEecCC-ChhhhhhcCCCCccEEEeecCHHHHHHHHHhc---CCCEEeecCCcceEEEcCCCCH
Q 005798 409 KVITSAIPDTVGEKLIGLVTSR-EEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST---KIPVLGHADGICHVYVDKSANL 484 (676)
Q Consensus 409 ~l~~~al~~alP~gv~~~v~~~-~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a---~~~~~lElGGk~p~iV~~dADl 484 (676)
+++.+ +||+|+||+|+|+ +.+++++ .| +||+|+||||+++||.|++.| .||++||||||||+||++|||+
T Consensus 168 ~l~~~----alP~gvv~vv~g~~~~~~~ll-~~-~vd~I~FTGS~~vG~~i~~~aa~~lkpv~lELGGk~p~iV~~dADl 241 (469)
T 3sza_A 168 TIIPQ----YLDKDLYPVINGGVPETTELL-KE-RFDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDL 241 (469)
T ss_dssp HHHHH----HSCTTTSCBCCCSHHHHHHHT-TS-CCSEEEEESCHHHHHHHHHHHHTTTCCEEEECCCCCEEEECTTSCH
T ss_pred HHHHH----hCCcceEEEEECCHHHHHHHH-hc-CCCEEEEECCHHHHHHHHHHHhhccCceEEecCCCCceEECCCCCH
Confidence 99986 4999999999964 4555655 45 799999999999999999877 3999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhc----------------------------CcEE-
Q 005798 485 DVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE----------------------------GVGL- 534 (676)
Q Consensus 485 ~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~----------------------------~~~~- 534 (676)
|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++ |.++
T Consensus 242 ~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~i~ga~v~ 320 (469)
T 3sza_A 242 DVACRRIAWGKFMNSGQTCVAPDYILCDPSIQ-NQIVEKLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIEGQKVA 320 (469)
T ss_dssp HHHHHHHHHHHHGGGGCCTTSCCEEEECGGGH-HHHHHHHHHHHHHHHCSCGGGCTTCCCCSCHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEehhHH-HHHHHHHHHHHHHhcCCCCcccCcccccCCHHHHHHHHHHHcCCEEE
Confidence 9999999999999987 999999999999999 79999999988763 1222
Q ss_pred ecCccc-ccc-c-c-C-----CCCCcccccccCceEEEEEeCCHHHHHHHHHccCCCceeEEEecCHHHHHHHHhccCee
Q 005798 535 FGGPRA-SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSA 605 (676)
Q Consensus 535 ~g~~~~-~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G 605 (676)
+||... .++ + | | ++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.++++++++++++|
T Consensus 321 ~GG~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~~G 400 (469)
T 3sza_A 321 YGGTGDAATRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSSG 400 (469)
T ss_dssp ECCCEETTTTEECCEEEESCCTTSGGGTSCCCSSEEEEEECSSHHHHHHHHHHSCCCSEEEEECSCHHHHHHHHHHCCCS
T ss_pred eCCccCCCCceeCCeeecCCCCcchhhhccccCCeEEEEecCCHHHHHHHHHcCCCCceEEEECCCHHHHHHHHHhCCcc
Confidence 244322 233 3 5 2 46899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCC--CCCCCcccCcccccccccccccccccchhcceeEEEEEEcCc
Q 005798 606 AVFHNASTR--FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 656 (676)
Q Consensus 606 ~v~iN~~~~--~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~~ 656 (676)
+|+||+... ..+.+||||.++||+| +++|.+|+++||+.|+|+++..
T Consensus 401 ~V~vN~~~~~~~~~~~PfGG~k~SG~G----r~~G~~g~~~ft~~K~v~~~~~ 449 (469)
T 3sza_A 401 GVAANDVIVHITLHSLPFGGVGNSGMG----SYHGKKSFETFSHRRSCLVRPL 449 (469)
T ss_dssp EEEESCSSGGGSCTTSCBCCCGGGEEC----CBSTHHHHHHTEEEEEEEECCS
T ss_pred eEEEeCCCCCCCCCCCCcCCccccccC----ccchHHHHHHhhCeeEEEECCc
Confidence 999999753 3578899999999986 3679999999999999988754
No 36
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=100.00 E-value=9.5e-77 Score=661.48 Aligned_cols=397 Identities=18% Similarity=0.191 Sum_probs=344.5
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+++++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 23 ~~P~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 95 (475)
T 1euh_A 23 YEPASGAELGSVPAMS------TEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYK- 95 (475)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHH-
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH-
Confidence 4577899999988888 889999999999999999999999999999999999999999999999887755421
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCC----cEE-EEEeeceeEEEEEcCC-Chh-hHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADG----LIL-EKTSCPLGVLLIVFES-RPD-ALVQ 380 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~-~~~~~PlGVV~~I~p~-~P~-~~~~ 380 (676)
++ ..|+..+++.++++++..+. .+...+.. ..+ ... +++++|+|||++|+|| ||. +.++
T Consensus 96 ---ea--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~ 162 (475)
T 1euh_A 96 ---SA--------VSEVVRTAEIINYAAEEGLRMEGEVLEGG--SFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGS 162 (475)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHHTTCCEEEEEGG--GTCGGGTTEEEEEEEEECSEEEEECCTTSTTHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCCcccCC--CCCccccceeeEEEEeccceEEEECCCCchHHHHHH
Confidence 22 24678888888888765433 34332211 123 356 8899999999999999 584 6789
Q ss_pred HHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHH
Q 005798 381 IASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQI 458 (676)
Q Consensus 381 ~~~~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i 458 (676)
+++|||++||+||+|||+.||+|+.++++++.+ + +|+|+||+|+| ++++++.|..||+||+|+||||+++|+.|
T Consensus 163 ~~~~ALaaGN~vVlKps~~tp~t~~~l~~ll~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i 238 (475)
T 1euh_A 163 KIAPALIAGNVIAFKPPTQGSISGLLLAEAFAE----AGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERI 238 (475)
T ss_dssp HHHHHHHTTCEEEEECCSTTHHHHHHHHHHHHH----HTCCTTTEEECCCCHHHHHHHHHHCTTCCEEEEESCHHHHHHH
T ss_pred HHHHHHHcCCEEEEeCCCcChHHHHHHHHHHHH----hCCCcCeEEEEeCCcHHHHHHHHhCCCcCEEEEECchHHHHHH
Confidence 999999999999999999999999999999986 7 99999999996 46678888889999999999999999999
Q ss_pred HHhc-CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC-----
Q 005798 459 KEST-KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 531 (676)
Q Consensus 459 ~~~a-~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~----- 531 (676)
++.+ .||+++|||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 239 ~~~aa~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p~ 317 (475)
T 1euh_A 239 GKMAGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVA-DELVEKIREKVLALTIGNPE 317 (475)
T ss_dssp HHHTTTSCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCSSSEEEEEEEHHHH-HHHHHHHHHHHHTSCBSCGG
T ss_pred HHhcCCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhcCCCcCCCCcEEEEehhHH-HHHHHHHHHHHHhccCCCcc
Confidence 9988 49999999999999999999999999999999999987 999999999999999 799999999987653
Q ss_pred ----------------------------cEEe-cCccccccc-c-C-----CCCCcccccccCceEEEEEeCCHHHHHHH
Q 005798 532 ----------------------------VGLF-GGPRASKLL-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 575 (676)
Q Consensus 532 ----------------------------~~~~-g~~~~~~~~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~deAi~~ 575 (676)
.++. |+.....++ | | ++|++++||+||||++|++|+|+||||++
T Consensus 318 ~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPvl~v~~~~~~~eai~~ 397 (475)
T 1euh_A 318 DDADITPLIDTKSADYVEGLINDANDKGATALTEIKREGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEI 397 (475)
T ss_dssp GTCSBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCCEETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESCHHHHHHH
T ss_pred ccCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCceeCCEEEeCCCCcCHHHcCccccceEEEEecCCHHHHHHH
Confidence 2222 333212233 5 2 46889999999999999999999999999
Q ss_pred HHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcC-CCCCCCCCcccCcccccccccccccccccchhcceeEEEEEEc
Q 005798 576 IHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNA-STRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 654 (676)
Q Consensus 576 aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~-~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~ 654 (676)
+|+++|||++||||+|.++++++++++++|+|+||+ ++...+.+||||.++||+| +++|++|+++|++.|+|.++
T Consensus 398 an~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~vN~~~~~~~~~~pfGG~k~SG~G----~~~g~~~~~~~~~~k~v~~~ 473 (475)
T 1euh_A 398 SNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAG----IQGVKYSIEAMTTVKSVVFD 473 (475)
T ss_dssp HHHSSEESEEEEECSCHHHHHHHHHHSCSSEEEESSCCCCCSTTSCBCCEETTEES----CBSHHHHHHHTEEEEEEEEE
T ss_pred HhCCCCCeeEEEEeCCHHHHHHHHHhCCEeeEEECCCCCCCCCCCCcCCCCCCCcC----CCccHHHHHHhCCeeEEEEe
Confidence 999999999999999999999999999999999999 7666678999999999986 46799999999999999875
No 37
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=100.00 E-value=8.6e-77 Score=660.45 Aligned_cols=395 Identities=15% Similarity=0.214 Sum_probs=339.5
Q ss_pred HHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhhc
Q 005798 230 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAG 309 (676)
Q Consensus 230 ~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g 309 (676)
+|.+|+.++++...+ .+++++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++.+|++++..
T Consensus 13 ~P~t~~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~-- 84 (462)
T 3etf_A 13 NPATGQTLAAMPWAN------AQEIEHALSLAASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPIK-- 84 (462)
T ss_dssp CTTTCCEEEECCCCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH--
T ss_pred CCCCCCEEEEecCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--
Confidence 467889899887777 889999999999999999999999999999999999999999999998877654321
Q ss_pred hhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHHH
Q 005798 310 YAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAI 386 (676)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~AL 386 (676)
++ ..|+..+++.++++++..+. .+.. +. ...+...+++++|+|||++|+|| ||. +.++++++||
T Consensus 85 --~a--------~~ev~~~~~~~~~~a~~~~~~~~~~-~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~AL 151 (462)
T 3etf_A 85 --QA--------RAEVTKSAALCDWYAEHGPAMLNPE-PT--LVENQQAVIEYRPLGVILAIMPWNFPLWQVLRGAVPIL 151 (462)
T ss_dssp --HH--------HHHHHHHHHHHHHHHHHHHHHTSCE-EC--SSGGGCEEEEEEECSEEEEECCSSSTTHHHHHHHHHHH
T ss_pred --HH--------HHHHHHHHHHHHHHHHhHHHhcCCc-cc--CCCCceeEEEeecCcEEEEECCCchHHHHHHHHHHHHH
Confidence 22 23566667777776654321 2222 11 11244578889999999999999 584 6789999999
Q ss_pred HhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHHhc---
Q 005798 387 RSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST--- 462 (676)
Q Consensus 387 aaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a--- 462 (676)
++||+||+||||.||+|+.++++++.+ + +|+|+||+|+|+.+.++.|..||+||+|+||||+++|+.|++.+
T Consensus 152 aaGN~VvlKps~~tp~~~~~l~~~l~~----aglP~gv~~vv~g~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~aa~~ 227 (462)
T 3etf_A 152 LAGNSYLLKHAPNVTGCAQMIARILAE----AGTPAGVYGWVNANNEGVSQMINDPRIAAVTVTGSVRAGAAIGAQAGAA 227 (462)
T ss_dssp HTTCEEEEECCTTCHHHHHHHHHHHHH----TTCCBTTEEECCCCHHHHHHHHTSTTEEEEEEESCHHHHHHHHHHHHHT
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcCeEEEEECCHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHhcc
Confidence 999999999999999999999999986 7 99999999997556667788899999999999999999999877
Q ss_pred CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC----------
Q 005798 463 KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG---------- 531 (676)
Q Consensus 463 ~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~---------- 531 (676)
.+|++||||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 228 ~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~~~ 306 (462)
T 3etf_A 228 LKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIVEEGIA-QAFTDRFVAAAAALKMGDPLVEEND 306 (462)
T ss_dssp TCCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTSTTCS
T ss_pred CCceEEEcCCCCccEECCCCCHHHHHHHHHHHHHhcCCCcccCCcEEEEehhHH-HHHHHHHHHHHHhhcCCCCccccCc
Confidence 49999999999999999999999999999999999988 999999999999999 799999999988652
Q ss_pred ------------------------cEE-ecCccc--cc-cc-c-C-----CCCCcccccccCceEEEEEeCCHHHHHHHH
Q 005798 532 ------------------------VGL-FGGPRA--SK-LL-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHI 576 (676)
Q Consensus 532 ------------------------~~~-~g~~~~--~~-~~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~deAi~~a 576 (676)
+++ +|+... .+ ++ | | ++|++++||+||||++|++|+|+||||+++
T Consensus 307 ~gpli~~~~~~~v~~~i~~a~~~ga~~~~gg~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPVl~v~~~~~~deAi~~a 386 (462)
T 3etf_A 307 LGPMARFDLRDELHQQVQASVAEGARLLLGGEKIAGEGNYYAATVLADVTPDMTAFRQELFGPVAAITVAKDAAHALALA 386 (462)
T ss_dssp BCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccCCCCcEEeeEEEECCCCCChhhcCceeCcEEEEEEcCCHHHHHHHH
Confidence 222 244321 22 33 5 2 468899999999999999999999999999
Q ss_pred HccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEEEEEEc
Q 005798 577 HQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 654 (676)
Q Consensus 577 N~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~ 654 (676)
|+++|||++||||+|.++++++++++++|+|+||++....+..||||.++||+| +++|++|+++||+.|+|+++
T Consensus 387 n~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~k~SG~G----~~~g~~g~~~~~~~k~v~~~ 460 (462)
T 3etf_A 387 NDSEFGLSATIFTADDTLAAEMAARLECGGVFINGYSASDARVAFGGVKKSGFG----RELSHFGLHEFCNVQTVWKN 460 (462)
T ss_dssp HCSSCCSCEEEECSCHHHHHHHHHHCCSSEEEESSCCCCCTTSCBCCSGGGEEC----CBSHHHHHHTTEEEEEEEEC
T ss_pred hCCCCCceEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCcCCCCCC----ccchHHHHHHHhceeEEEEe
Confidence 999999999999999999999999999999999998777788999999999987 36799999999999999874
No 38
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=100.00 E-value=2e-76 Score=664.34 Aligned_cols=399 Identities=16% Similarity=0.177 Sum_probs=339.6
Q ss_pred HHHH-hCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 005798 229 IKVL-EGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 307 (676)
Q Consensus 229 ~~~~-tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~ 307 (676)
.+|. +|+.++++...+ .+++++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 56 ~nP~~t~~~i~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 129 (516)
T 1uzb_A 56 LNPSAPSEVVGTTAKAG------KAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWV 129 (516)
T ss_dssp EETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred ECCCCCCcEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 5677 588888888877 889999999999999999999999999999999999999999999999887755421
Q ss_pred hchhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCC-Ch-hhHHHHHHH
Q 005798 308 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIASL 384 (676)
Q Consensus 308 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P-~~~~~~~~~ 384 (676)
++. .|+...++.++++++..+. .+...+... ..+...+++++|+|||++|+|| || .+.+++++|
T Consensus 130 ----ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ 196 (516)
T 1uzb_A 130 ----EAS--------ADVAEAIDFIEYYARAALRYRYPAVEVVP-YPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMIVG 196 (516)
T ss_dssp ----HHH--------HHHHHHHHHHHHHHHHHGGGCSSCCCCCC-CTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHH
T ss_pred ----HHH--------HHHHHHHHHHHHHHHHHHHhcCCcccccC-CCCceEEEEEeccceEEEECCCccHHHHHHHHHHH
Confidence 221 3566777777777654322 222211011 1345668899999999999999 59 467899999
Q ss_pred HHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhc
Q 005798 385 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 462 (676)
Q Consensus 385 ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a 462 (676)
||++||+||+|||+.||+|+..|++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 197 ALaaGN~VVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~I~FTGS~~~G~~i~~~a 272 (516)
T 1uzb_A 197 PVAVGNTVIAKPAEDAVVVGAKVFEIFHE----AGFPPGVVNFLPGVGEEVGAYLVEHPRIRFINFTGSLEVGLKIYEAA 272 (516)
T ss_dssp HHHTTCEEEEECCGGGHHHHHHHHHHHHH----HTCCTTSEEECCCSSSHHHHHHHTCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCeEEEeCCCCCHHHHHHHHHHHHH----hCCCcCeEEEEeCCCchhhhhhhcCCCcCEEEecCCHHHHHHHHHHh
Confidence 99999999999999999999999999986 7 99999999996 677888888899999999999999999998765
Q ss_pred ---------CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcCc
Q 005798 463 ---------KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV 532 (676)
Q Consensus 463 ---------~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~ 532 (676)
.||+++|||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 273 a~~~~~~~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~ 351 (516)
T 1uzb_A 273 GRLAPGQTWFKRAYVETGGKNAIIVDETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAY-EPVLERVLKRAERLSV 351 (516)
T ss_dssp TSCCTTCCSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHH-HHHHHHHHHHHTTCCB
T ss_pred hhccccccccceeEEecCCccceeECCCCCHHHHHHHHHHHHHhCCCCccccCcEEEEchHHH-HHHHHHHHHHHHhccC
Confidence 48999999999999999999999999999999999987 999999999999999 7999999998876431
Q ss_pred --------------------------------EE-ecCcc--cccc-c-c-C-----CCCCcccccccCceEEEEEeCCH
Q 005798 533 --------------------------------GL-FGGPR--ASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDV 569 (676)
Q Consensus 533 --------------------------------~~-~g~~~--~~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~ 569 (676)
++ +|+.. ..++ + | | ++|++++||+||||++|++|+|+
T Consensus 352 G~p~~~~~~Gpli~~~~~~~v~~~i~~a~~~G~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 431 (516)
T 1uzb_A 352 GPAEENPDLGPVVSAEQERKVLSYIEIGKNEGQLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKDF 431 (516)
T ss_dssp SCGGGCCSBCCCSCHHHHHHHHHHHHHHTTTSEEEECCSBCSSSSCCBCCEEEESCCTTSGGGTSCCCSSEEEEEEESSH
T ss_pred CCCccccccCCCCCHHHHHHHHHHHHHHHHCCCEEECCccCCCCCcEECCEEEECCCCCCHhhhccccCceEEEEEeCCH
Confidence 22 35543 1233 3 5 2 46899999999999999999999
Q ss_pred HHHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCC--CCCCcccCcccccccccccccccccchhccee
Q 005798 570 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGLLT 647 (676)
Q Consensus 570 deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~--~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~ 647 (676)
||||+++|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+|. +++|++++++|++
T Consensus 432 ~eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~~~PfGG~k~SG~G~---~~~g~~~l~~f~~ 508 (516)
T 1uzb_A 432 AEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNA---KTGALDYLRLFLE 508 (516)
T ss_dssp HHHHHHHHCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEESSCSCCCCTTTSCBCCSGGGBSCC---CBTSHHHHHTTEE
T ss_pred HHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCEeEEEEeCCCCCCCCCCCCCCCcCcCCCCC---ccchHHHHHHcCC
Confidence 9999999999999999999999999999999999999999986543 4678999999998862 2468899999999
Q ss_pred EEEEEEc
Q 005798 648 TRWILRG 654 (676)
Q Consensus 648 ~k~v~~~ 654 (676)
.|+|+++
T Consensus 509 ~k~v~~~ 515 (516)
T 1uzb_A 509 MKAVAER 515 (516)
T ss_dssp EEEEEEE
T ss_pred eeEEEec
Confidence 9999764
No 39
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=100.00 E-value=9.7e-77 Score=665.65 Aligned_cols=401 Identities=17% Similarity=0.183 Sum_probs=330.7
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.++.+|+.++++...+ .+++++++++|++||+.|+.++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 33 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 104 (508)
T 3r64_A 33 INPYDDSVIAESKQAS------IADVDAAYEAAKKAQAEWAATPAAERSAIIYRAAELLEEHREEIVEWLIKESGSTR-- 104 (508)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCCH--
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCH--
Confidence 3467889999988888 88999999999999999999999999999999999999999999999887654432
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhcccccccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAI 386 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~AL 386 (676)
.++ ..|+..+++.++++++..+......+.. ...+...+++++|+|||++|+|| ||. +.++++++||
T Consensus 105 --~~a--------~~Ev~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~AL 173 (508)
T 3r64_A 105 --SKA--------NLEITLAGNITKESASFPGRVHGRISPS-NTPGKENRVYRVAKGVVGVISPWNFPLNLSIRSVAPAL 173 (508)
T ss_dssp --HHH--------HHHHHHHHHHHHHHTTSTTTCCEEEECC-SSTTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHhhhhcCccccc-CCCCceeEEEEecceEEEEECCCcchHHHHHHHHHHHH
Confidence 122 2378888999999887665432233211 12346678999999999999999 585 6789999999
Q ss_pred HhCCEEEEeCCcchHHHH-HHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 005798 387 RSGNGLLLKGGKEAMRSN-AILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 462 (676)
Q Consensus 387 aaGN~vVlKps~~tp~t~-~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a- 462 (676)
++||+||+|||+.||+|+ .++++++.+ + +|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.|
T Consensus 174 aaGN~VVlKps~~tp~t~~~~l~~ll~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~fTGS~~~g~~i~~~aa 249 (508)
T 3r64_A 174 AVGNAVVIKPASDTPVTGGVIPARIFEE----AGVPAGVISTVAGAGSEIGDHFVTHAVPKLISFTGSTPVGRRVGELAI 249 (508)
T ss_dssp HTTCEEEEECCTTCHHHHTHHHHHHHHT----TTCCTTTEEECCCCTTTTHHHHHHCSSCSEEEEESCHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCChHHHHHHHHHHHHH----hCcCcCeEEEEeCCCHHHHHHHhhCCCccEEEEECCHHHHHHHHHHhh
Confidence 999999999999999999 999999876 8 99999999996 467788888899999999999999999999876
Q ss_pred ----CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcCc-----
Q 005798 463 ----KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV----- 532 (676)
Q Consensus 463 ----~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~----- 532 (676)
.||++||||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 250 ~~~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~ 328 (508)
T 3r64_A 250 NGGPMKTVALELGGNAPFVVLADADIDAAAQAAAVGAFLHQGQICMSINRVIVDAAVH-DEFLEKFVEAVKNIPTGDPSA 328 (508)
T ss_dssp SSSSCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTSTTCTTTCCSEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTS
T ss_pred cccCCCceEeecCCcCceEECCCCCHHHHHHHHHHHHHhcCCCCcccCcEEEEehhHH-HHHHHHHHHHHHhccCCCCcc
Confidence 38999999999999999999999999999999999987 999999999999999 7999999999987521
Q ss_pred -----------------------------EE-ecCccccccc-c-C-----CCCCcccccccCceEEEEEeCCHHHHHHH
Q 005798 533 -----------------------------GL-FGGPRASKLL-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 575 (676)
Q Consensus 533 -----------------------------~~-~g~~~~~~~~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~deAi~~ 575 (676)
++ +|+.....++ | | ++|++++||+||||++|++|+|+||||++
T Consensus 329 ~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 408 (508)
T 3r64_A 329 EGTLVGPVINDSQLSGLKEKIELAKKEGATVQVEGPIEGRLVHPHVFSDVTSDMEIAREEIFGPLISVLKADDEAHAAEL 408 (508)
T ss_dssp SSCCBCCCSCHHHHHHHHHHHHHHHTTTCEEEECCCEETTEECCEEEEEECTTSGGGTSCCCSSEEEEEEESSHHHHHHH
T ss_pred CCCcccCCCCHHHHHHHHHHHHHHHHcCCEEEecCCCCCcEEecEEEecCCCCChhhcccccCceEEEEEeCCHHHHHHH
Confidence 22 2333222223 5 2 46899999999999999999999999999
Q ss_pred HHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCC-CCCCcccCcccccccccccccccccchhcceeEEEEEEc
Q 005798 576 IHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 654 (676)
Q Consensus 576 aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~-~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~ 654 (676)
+|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+| +++|++|+++||+.|+|+++
T Consensus 409 aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~~PfGG~~~SG~G----r~~G~~~l~~ft~~k~v~~~ 484 (508)
T 3r64_A 409 ANASDFGLSAAVWSKDIDRAAQFALQIDSGMVHINDLTVNDEPHVMFGGSKNSGLG----RFNGDWAIEEFTTDRWIGIK 484 (508)
T ss_dssp HTSSSCCSCEEEECSCHHHHHHHHTTSCSSEEEECC------------------------CCCHHHHHHHTEEEEEEEEE
T ss_pred HhCCCCCcEEEEEcCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCCcCCcCCCCCC----cCccHHHHHHhhceEEEEEe
Confidence 9999999999999999999999999999999999998754 577899999999886 35699999999999999987
Q ss_pred Cce
Q 005798 655 NGH 657 (676)
Q Consensus 655 ~~~ 657 (676)
.+.
T Consensus 485 ~~~ 487 (508)
T 3r64_A 485 RSA 487 (508)
T ss_dssp CCS
T ss_pred ccc
Confidence 654
No 40
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=100.00 E-value=5.8e-77 Score=663.01 Aligned_cols=398 Identities=16% Similarity=0.115 Sum_probs=334.5
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++..++ .+++++++++|++||+.|+++|.++|.++|++++++|++|+++|+++++.|+||...
T Consensus 11 ~nP~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 83 (474)
T 4h7n_A 11 RNPRTGKFDYVIIPPP------PRLLAQQCNRARRAQSRWQELGVEGRITTLQQWKQAILSRREQLTEALVNDTGRLSI- 83 (474)
T ss_dssp ECTTTCSEEEEECCCC------HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHSCSHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-
Confidence 3578899999988888 889999999999999999999999999999999999999999999998877654211
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
+ ..|+..++..+++++..... ...... ....++...+..++|+|||++|+|| ||. +.+++++||
T Consensus 84 ----~--------~~ev~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~~~A 150 (474)
T 4h7n_A 84 ----T--------VLEIDSFLASIDRWCGLAPELLQTSAK-NTSIPFIALQQSLVPYPLVGVISPWNFPLTLSMIDTIPA 150 (474)
T ss_dssp ----H--------HHHHHHHHHHHHHHHHHHHHHHCCEEE-ECSSTTEEEEEEEEECSEEEEEECSSSHHHHHHTTHHHH
T ss_pred ----H--------HHHHHHHHHHHHHHHhhhhhccccccc-CCCCCCccceEEEEeccEEEEECCCCcHHHHHhcccCcc
Confidence 1 13566666667766543221 111111 0112344566788999999999999 595 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHHhc--
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 462 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a-- 462 (676)
|++||+||+||||.||+++..+++++.+ + +|+|++|+|+|+.+.+..|..| +|+|+||||+++||.|++.+
T Consensus 151 LaaGN~VVlKps~~tp~~~~~l~~~~~~----ag~p~gv~~~v~g~~~~~~~l~~~--v~~v~FTGS~~~G~~i~~~aa~ 224 (474)
T 4h7n_A 151 LLAGCAVVVKPSEIAPRFVAPLLMALNT----VPELRDVLIFVEGGGETGANLINY--VDFVCFTGSVATGREVAETAAR 224 (474)
T ss_dssp HHHTCEEEEEECTTSCTTHHHHHHHHTT----CTTTTTTEEECCCCHHHHHHHHTT--CSEEEEESCHHHHHHHHHHHHH
T ss_pred hhcCCceeecccccCchHHHHHHhhhhh----hcccccceeeccccchhhhhhhhc--cceEEeccccchhhhhhhhhhc
Confidence 9999999999999999999999998875 7 9999999999766677777765 99999999999999999877
Q ss_pred -CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcCc--------
Q 005798 463 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV-------- 532 (676)
Q Consensus 463 -~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~-------- 532 (676)
.||++||||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 225 ~~~~v~lElGGk~p~iV~~dAdl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p~~~~~ 303 (474)
T 4h7n_A 225 RFIPAYLELGGKDPAIVLESANLELATSAILWGAVVNTGQSCLSIERIYVAESKF-EEFYHQLIAKAHRLQLAYPLVEDG 303 (474)
T ss_dssp HTCCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGH-HHHHHHHHHHHHHCCBCCSSGGGC
T ss_pred ccccccccCCCcCccccCchhhHHHHHHHHHhhhccCCCCceeecccccchHHHH-HHHHHHHHHHhhccccCCCccccc
Confidence 49999999999999999999999999999999999987 999999999999999 7999999998887532
Q ss_pred --------------------------EE-ecCccc---ccc-c-c-C-----CCCCcccccccCceEEEEEeCCHHHHHH
Q 005798 533 --------------------------GL-FGGPRA---SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 574 (676)
Q Consensus 533 --------------------------~~-~g~~~~---~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~deAi~ 574 (676)
.+ .|+... .++ + | | ++|++++||+||||++|++|+|+||||+
T Consensus 304 ~~gpli~~~~~~~v~~~i~~a~~~ga~v~~Gg~~~~~~~g~~~~Ptv~~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 383 (474)
T 4h7n_A 304 AIGPIIAEKQAGIINDHILDAVEKGAVIHCGGKVEELGGGWWCRPTVMTNVNHSMKVMTEETFGPIMPVMPFPDVEEAVY 383 (474)
T ss_dssp SBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCEEETTEEECCCEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHHH
T ss_pred ccCccccHHHHHHHHHHHHHHHhhCceeccCCcccccCCCcccCceeEEeeccccccccccccCcEEEEEEECCHHHHHH
Confidence 12 233221 122 2 5 2 4689999999999999999999999999
Q ss_pred HHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCC--CCCCcccCcccccccccccccccccchhcceeEEEEE
Q 005798 575 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 652 (676)
Q Consensus 575 ~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~--~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~ 652 (676)
++|+++|||++||||+|.++++++++++++|+|+||+.+.. .+.+||||.+.||+|. +++|.+|+++|++.|+|+
T Consensus 384 ~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~v~iN~~~~~~~~~~~pfgG~~~SG~G~---~~~G~~g~~~f~~~k~v~ 460 (474)
T 4h7n_A 384 LANDTIYGLSAAVFAGSEDEALKVARQLNAGAISINDAALTAMMHEGEKNAFNFSGLGG---SRVGAAGLKRFLRKQAFL 460 (474)
T ss_dssp HHHCSSCCSEEEEECSSHHHHHHHHTTSCCSEEEESSSCGGGTCCCSCCCCCGGGEESC---CSSTTHHHHTTEEEEEEE
T ss_pred HHHcCCCCCeEEEEeCCHHHHHHHHHhCCeeEEEECCCCccCCcCCCCCCCcCCCCCCC---CcchHHHHHHhCeEEEEE
Confidence 99999999999999999999999999999999999987543 4678999999999863 245899999999999999
Q ss_pred EcCc
Q 005798 653 RGNG 656 (676)
Q Consensus 653 ~~~~ 656 (676)
++..
T Consensus 461 ~~~~ 464 (474)
T 4h7n_A 461 IKTN 464 (474)
T ss_dssp EECS
T ss_pred ECCC
Confidence 8654
No 41
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=1.1e-76 Score=663.18 Aligned_cols=400 Identities=17% Similarity=0.191 Sum_probs=325.7
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+++++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++.+|++++.
T Consensus 27 ~~P~t~~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 98 (485)
T 4dng_A 27 LNPYDQSVITTASLAT------GKQLEDAFDIAQKAQKEWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTI-- 98 (485)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4577899999988888 88999999999999999999999999999999999999999999999887765432
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhcccccc-cccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
.++ ..|+..+++.++++++..+.. +...+. ....+...+++++|+|||++|+|| +|. +.++++++|
T Consensus 99 --~~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 167 (485)
T 4dng_A 99 --IKS--------TIELEQTIAILDEAMTYTGELGGVKEVP-SDIEGKTNKIYRLPLGVISSISPFNFPMNLSMRSIAPA 167 (485)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHGGGCSCEECCC-CSSTTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhCCeeccc-cCCCCceEEEEEecceEEEEECCCccHHHHHHHHHHHH
Confidence 122 236788888888887655433 332221 112346778999999999999999 584 678999999
Q ss_pred HHhCCEEEEeCCcchHHHH-HHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhc
Q 005798 386 IRSGNGLLLKGGKEAMRSN-AILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 462 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~-~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a 462 (676)
|++||+||+|||+.||+++ .+|++++.+ + +|+|+||+|+| ++++++.|..||+||+|+||||+++|+.|++.+
T Consensus 168 LaaGN~VVlKps~~tp~~~~~~l~~~l~~----aGlP~gvv~vv~g~~~~~~~~L~~~p~v~~v~fTGS~~~g~~i~~~a 243 (485)
T 4dng_A 168 IALGNSVVHKPDIQTAISGGTIIAKAFEH----AGLPAGVLNVMLTDVKEIGDGMLTNPIPRLISFTGSTAVGRHIGEIA 243 (485)
T ss_dssp HHTTCEEEEECCGGGHHHHTHHHHHHHHH----TTCCTTSEEECCCCHHHHTTHHHHCSSCSEEEEEECHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCcChHHHHHHHHHHHHH----hCcCCCeEEEEeCCChhHHHHHHhCCCCCEEEEECCcHHHHHHHHHH
Confidence 9999999999999999999 999999986 7 99999999996 556888888999999999999999999999877
Q ss_pred ---CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcCc------
Q 005798 463 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 532 (676)
Q Consensus 463 ---~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------ 532 (676)
.||++||||||||+||++|||+|.|++.+++++|.|+| .|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 244 a~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~~~~~ 322 (485)
T 4dng_A 244 GRAFKRMALELGGNNPFAVLSDADVDRAVDAAIFGKFIHQGQICMIINRIIVHQDVY-DEFVEKFTARVKQLPYGDQTDP 322 (485)
T ss_dssp HHHTCEEEEEECCCEEEEECTTSCHHHHHHHHHHHHTTCC----CCEEEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTST
T ss_pred hhhccchhhhcCCCCceEEcCCCCHHHHHHHHHHHHHhcCCCccccCCEEEEeHHHH-HHHHHHHHHHHHhccCCCCCcC
Confidence 49999999999999999999999999999999999988 999999999999999 7999999999887522
Q ss_pred ----------------------------EE-ecCccccccc-c-C-----CCCCcccccccCceEEEEEeCCHHHHHHHH
Q 005798 533 ----------------------------GL-FGGPRASKLL-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHI 576 (676)
Q Consensus 533 ----------------------------~~-~g~~~~~~~~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~deAi~~a 576 (676)
++ +|+.....++ | | ++|++++||+||||++|++|+|+||||+++
T Consensus 323 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~g~~~~Ptvl~~v~~~~~i~~eE~FGPvl~v~~~~~~~eAi~~a 402 (485)
T 4dng_A 323 KTVVGPLINERQIEKALEIIEQAKTDGIELAVEGKRVGNVLTPYVFVGADNNSKIAQTELFAPIATIIKAGSDQEAIDMA 402 (485)
T ss_dssp TCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCEETTEECCEEEESCCTTSHHHHCCCCSSEEEEEEESSHHHHHHHH
T ss_pred CCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCcEECCEEEecCCCCChhhcCccccceEEEEEeCCHHHHHHHH
Confidence 12 2333212223 5 2 468899999999999999999999999999
Q ss_pred HccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCC-CCCCcccCcccccccccccccccccchhcceeEEEEEEcC
Q 005798 577 HQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGN 655 (676)
Q Consensus 577 N~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~-~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~ 655 (676)
|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+| +++|++|+++||+.|+|+++.
T Consensus 403 n~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~vN~~~~~~~~~~pfGG~~~SG~G----~~~g~~~l~~~t~~k~v~~~~ 478 (485)
T 4dng_A 403 NDTEYGLSSAVFTSDLEKGEKFALQIDSGMTHVNDQSVNDSPNIAFGGNKASGVG----RFGNPWVVEEFTVTKWISIQK 478 (485)
T ss_dssp HCSSCCSEEEEECSCHHHHHHHHTTSCSSEEEESCC--------------------------CHHHHHHHEEEEEEEEEC
T ss_pred hCCCCCceEEEECCCHHHHHHHHHhcCcceEEECCCCCCCCCCCCcCCcCCCCCC----ccchHHHHHHhhceEEEEEec
Confidence 999999999999999999999999999999999998654 678899999999886 356999999999999998865
Q ss_pred c
Q 005798 656 G 656 (676)
Q Consensus 656 ~ 656 (676)
+
T Consensus 479 ~ 479 (485)
T 4dng_A 479 Q 479 (485)
T ss_dssp -
T ss_pred C
Confidence 4
No 42
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=7.8e-76 Score=655.41 Aligned_cols=399 Identities=15% Similarity=0.144 Sum_probs=341.7
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+++++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 26 ~~P~t~~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 98 (486)
T 1t90_A 26 VNPATKEVLCQVPIST------KEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTK- 98 (486)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 4577899999988887 889999999999999999999999999999999999999999999999877654421
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCCC-hh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFESR-PD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~-P~-~~~~~~~~A 385 (676)
++ ..|+..+++.+++++...+. .++..+.. ..+...+++|+|+|||++|+||| |. +.+++++||
T Consensus 99 ---~a--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~A 165 (486)
T 1t90_A 99 ---EA--------LGEVGRGIENVEFAAGAPSLMMGDSLASI--ATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMA 165 (486)
T ss_dssp ---HH--------HHHHHHHHHHHHHHTTHHHHHCEEEEEEE--ETTEEEEEEEEECSEEEEECCSSCTTHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEecccCEEEEECCCchhHHHHHHHHHHH
Confidence 22 23677788888887754332 23322211 13446678899999999999995 94 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHHhc--
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 462 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a-- 462 (676)
|++||+||+|||+.||+|+..+++++.+ + +|+|+||+|+|+.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 166 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~L~~~~~v~~I~fTGS~~~g~~i~~~aa~ 241 (486)
T 1t90_A 166 IALGNTFILKPSERTPLLTEKLVELFEK----AGLPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGSE 241 (486)
T ss_dssp HHTTCEEEEECCSSSCHHHHHHHHHHHH----TTCCTTSEEECCCSHHHHHHHHHCTTEEEEEEESCHHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCCChHHHHHHHHHHHH----hCCCCCEEEEEECCHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999986 7 99999999997556778888899999999999999999999877
Q ss_pred -CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccce-EEEeCccCChhHHHHHHHHHHhcC--------
Q 005798 463 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMET-LLVHKDLACNGALNELVVELQHEG-------- 531 (676)
Q Consensus 463 -~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~r-v~V~~~i~d~~f~~~l~~~~~~~~-------- 531 (676)
.||+++|||||||+||++|||+|.|++.+++++|.|+| .|+|++| +|||++ | |+|+++|+++++++.
T Consensus 242 ~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvv~v~~~-~-d~f~~~l~~~~~~~~vG~~~~~~ 319 (486)
T 1t90_A 242 NLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGI-A-DEFMAKLQEKVADIKIGNGLDDG 319 (486)
T ss_dssp TTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHH-H-HHHHHHHHHHHTTCCBSCTTSTT
T ss_pred cCCcEEeccCCCCcEEECCCCCHHHHHHHHHHHHHhCCCCCcccCCeeEEecCC-H-HHHHHHHHHHHHhcccCCCCccC
Confidence 59999999999999999999999999999999999987 9999999 999999 9 799999999887653
Q ss_pred --------------------------cEE-ecCcc---cccc-c-c-C-----CCCCcccccccCceEEEEEeCCHHHHH
Q 005798 532 --------------------------VGL-FGGPR---ASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 573 (676)
Q Consensus 532 --------------------------~~~-~g~~~---~~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~deAi 573 (676)
.++ .|+.. ..++ + | | ++|++++||+||||++|++|+|+||||
T Consensus 320 ~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~g~~~~Ptvl~~v~~~~~~~~eEiFGPvl~v~~~~~~~eai 399 (486)
T 1t90_A 320 VFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAI 399 (486)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECSSSSCCSSSSCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCCEECCEEEeCCCCCCHhhcCcccCceEEEEEeCCHHHHH
Confidence 122 24432 1233 3 5 2 368899999999999999999999999
Q ss_pred HHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCC-CCCCcccCcccccccccccccccccchhcceeEEEEE
Q 005798 574 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 652 (676)
Q Consensus 574 ~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~-~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~ 652 (676)
+++|+++|||++||||+|.++++++++++++|+|+||++... .+.+||||.++||+|. .+++|++|+++|++.|+|.
T Consensus 400 ~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~k~SG~G~--~~~~g~~g~~~~~~~k~v~ 477 (486)
T 1t90_A 400 EIANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINLGVPAPMAFFPFSGWKSSFFGT--LHANGKDSVDFYTRKKVVT 477 (486)
T ss_dssp HHHHHSSEESEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCCTTSCCCCEETTEESS--SCSSHHHHHHHTEEEEEEE
T ss_pred HHHhCCCCCeEEEEEcCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCCcCCCCcCCCCC--CccchHHHHHHhhceEEEE
Confidence 999999999999999999999999999999999999986543 3578999999999863 2467999999999999998
Q ss_pred EcC
Q 005798 653 RGN 655 (676)
Q Consensus 653 ~~~ 655 (676)
+++
T Consensus 478 ~~~ 480 (486)
T 1t90_A 478 ARY 480 (486)
T ss_dssp EEC
T ss_pred Eec
Confidence 754
No 43
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}
Probab=100.00 E-value=1.4e-75 Score=653.00 Aligned_cols=391 Identities=16% Similarity=0.173 Sum_probs=316.8
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
.+|.+|+.++++...+ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 28 ~~P~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~-- 99 (478)
T 3ty7_A 28 INPATEEVIGKVAKGN------KADVDKAVEAADDVYLEFRHTSVKERQALLDKIVKEYENRKDDIVQAITDELGAPL-- 99 (478)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 4577899999988888 88999999999999999999999999999999999999999999999988775542
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhcccccc-cccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHH
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 385 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 385 (676)
.++. ..|+...++.++++++..+.. +.. . +...+++++|+|||++|+|| +|. +.++++++|
T Consensus 100 --~ea~-------~~ev~~~~~~~~~~a~~~~~~~~~~-~------~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 163 (478)
T 3ty7_A 100 --SLSE-------RVHYQMGLNHFVAARDALDNYEFEE-R------RGDDLVVKEAIGVSGLITPWNFPTNQTSLKLAAA 163 (478)
T ss_dssp --HHHH-------HTHHHHHHHHHHHHHHHHHHCCSEE-E------ETTEEEEEEECCCEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHHh-------HHHHHHHHHHHHHHHHHHHHhhccc-C------CccceEEecCceEEEEECCCcchHHHHHHHHHHH
Confidence 1221 125666667777766543221 211 1 12357789999999999998 584 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhc-
Q 005798 386 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 462 (676)
Q Consensus 386 LaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a- 462 (676)
|++||+||+|||+.||+|+.++++++.+ + +|+|+||+|++ +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 164 LaaGN~VVlKps~~tp~t~~~l~~~~~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~v~fTGS~~~G~~i~~~aa 239 (478)
T 3ty7_A 164 FAAGSPVVLKPSEETPFAAVILAEIFDK----VGVPKGVFNLVNGDGAGVGNPLSEHPKVRMMSFTGSGPTGSKIMEKAA 239 (478)
T ss_dssp HHHTCCEEEECCTTSCHHHHHHHHHHHH----HTCCTTTEEECCCCTTTTHHHHHHCTTCCEEEECSCHHHHCC--CSTT
T ss_pred HHcCCeEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEECCChHHHHHHHhCCCcCEEEEECcHHHHHHHHHHHH
Confidence 9999999999999999999999999986 7 99999999996 667888898999999999999999999999887
Q ss_pred --CCCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhc---------
Q 005798 463 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE--------- 530 (676)
Q Consensus 463 --~~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~--------- 530 (676)
.+|+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++
T Consensus 240 ~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~ 318 (478)
T 3ty7_A 240 KDFKKVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAGTRVLVPNKIK-DAFLAELKEQFSQVRVGNPREDG 318 (478)
T ss_dssp TTTCEEECCCCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEETTTH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred hcCCceEEecCCCCCcccCCCCCHHHHHHHHHHHHHHhCCCCccCCCeEEEcHHHH-HHHHHHHHHHHHhccCCCCCCCC
Confidence 39999999999999999999999999999999999987 999999999999999 79999999998864
Q ss_pred -------------------------CcEE-ecCc-c----cccc-c-c-C-----CCCCcccccccCceEEEEEeCCHHH
Q 005798 531 -------------------------GVGL-FGGP-R----ASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 571 (676)
Q Consensus 531 -------------------------~~~~-~g~~-~----~~~~-~-p-v-----~~~~~~~eE~FGPVl~i~~~~~~de 571 (676)
|+++ +|+. . ..++ + | | ++|++++||+||||++|++|+|+||
T Consensus 319 ~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPvl~v~~~~~~~e 398 (478)
T 3ty7_A 319 TQVGPIISKKQFDQVQNYINKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDNQMTIAQEEIFGPVMSVITYNDLDE 398 (478)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCTTCCSSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHH
T ss_pred CccCCCcCHHHHHHHHHHHHHHHHCCCEEEecCccCccccCCCceeCCEEEecCCCCCcccCceeECceeEEEecCCHHH
Confidence 2233 3442 1 1233 3 5 2 4688999999999999999999999
Q ss_pred HHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCCCCCCcccCcccccccccccccccccchhcceeEEEE
Q 005798 572 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 651 (676)
Q Consensus 572 Ai~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v 651 (676)
||+++|+++|||++||||+|.++++++++++++|+|+||+ ....+..||||.++||+| +++|++|+++||+.|+|
T Consensus 399 Ai~~an~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~vN~-~~~~~~~PfGG~k~SG~G----~~~G~~~l~~~t~~k~v 473 (478)
T 3ty7_A 399 AIQIANDTKYGLAGYVIGKDKETLHKVARSIEAGTVEINE-AGRKPDLPFGGYKQSGLG----REWGDYGIEEFLEVKSI 473 (478)
T ss_dssp HHHHHTCSSCCSEEEEECSCHHHHHHHHHHSCSSEEEETT-CC--------------------------CCGGGEEEEEE
T ss_pred HHHHHhCCCCCceEEEECCCHHHHHHHHHhCCcCeEEECC-CCCCCCCCcCCcCcCcCC----ccchHHHHHHhcCeEEE
Confidence 9999999999999999999999999999999999999999 555677899999999986 36799999999999998
Q ss_pred EE
Q 005798 652 LR 653 (676)
Q Consensus 652 ~~ 653 (676)
+.
T Consensus 474 ~~ 475 (478)
T 3ty7_A 474 AG 475 (478)
T ss_dssp ET
T ss_pred EE
Confidence 73
No 44
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A*
Probab=100.00 E-value=4.3e-75 Score=653.11 Aligned_cols=401 Identities=15% Similarity=0.151 Sum_probs=334.1
Q ss_pred HHHhCCce-eeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 005798 230 KVLEGKRV-GTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 308 (676)
Q Consensus 230 ~~~tg~~i-GT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~ 308 (676)
+|.+|+.+ +++...+ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 13 nP~tg~~i~~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 85 (510)
T 1ez0_A 13 NAFTGEALPLAFPVHT------EVEVNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEV- 85 (510)
T ss_dssp CTTTSSEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred CCCCCCEEEEEECCCC------HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH-
Confidence 46789999 6888888 889999999999999999999999999999999999999999999999888765432
Q ss_pred chhHHHHHHhhcChHHHHHHHHHHHHHhccccc---ccccc----cccccCCCcEEEEEeeceeEEEEEcCC-Chh-hH-
Q 005798 309 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP---IGQIL----KRTELADGLILEKTSCPLGVLLIVFES-RPD-AL- 378 (676)
Q Consensus 309 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~- 378 (676)
++. .|+...++.++++++..+. .+... +..........+++|+|+|||++|+|| ||. ++
T Consensus 86 ---~a~--------~Ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~ 154 (510)
T 1ez0_A 86 ---RLT--------GEIARTANQLRLFADVVNSGSYHQAILDTPNPTRAPLPKPDIRRQQIALGPVAVFGASNFPLAFSA 154 (510)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHHHHHTGGGCEEEECCBTTCSSSCBCCEEEEEEECSCEEEECCSSCTTTTST
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHhCccccccccccccccCCCCCCCceEEEecCcEEEEECCccchhhhhh
Confidence 221 2444555555555432211 11111 100000111357889999999999999 585 43
Q ss_pred -HHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHH
Q 005798 379 -VQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLV 455 (676)
Q Consensus 379 -~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g 455 (676)
+++++|||++||+||+|||+.||+|+.++++++.++|.++ +|+|+||+|+| +.++++.|..||+||+|+||||+++|
T Consensus 155 ~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G 234 (510)
T 1ez0_A 155 AGGDTASALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQLPQAIFTLLQGNQRALGQALVSHPEIKAVGFTGSVGGG 234 (510)
T ss_dssp TSHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEECCSCTHHHHHHHHCTTCCEEEEESCHHHH
T ss_pred hHHHHHHHHHcCCEEEEECCCCchHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHcCCCCCEEEEeCcHHHH
Confidence 4999999999999999999999999999999999988889 99999999996 66788888889999999999999999
Q ss_pred HHHHHhcC-----CCEEeecCCcceEEEcCCCCHH--HHHHHHHHhcCCCCc-cccccceEEEeCc-cCChhHHHHHHHH
Q 005798 456 SQIKESTK-----IPVLGHADGICHVYVDKSANLD--VAKNIVIDAKIDYPA-ACNAMETLLVHKD-LACNGALNELVVE 526 (676)
Q Consensus 456 ~~i~~~a~-----~~~~lElGGk~p~iV~~dADl~--~A~~~iv~~~~~n~g-~C~a~~rv~V~~~-i~d~~f~~~l~~~ 526 (676)
|.|++.+. ||+++|||||||+||++|||+| .|++.+++++|.|+| .|+|++|+|||++ +| |+|+++|+++
T Consensus 235 ~~i~~~aa~~l~~~pv~lELGGk~p~iV~~dADl~~~~aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l~~~ 313 (510)
T 1ez0_A 235 RALFNLAHERPEPIPFYGELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKPGVVFALNTPET-QAFIETAQSL 313 (510)
T ss_dssp HHHHHHHHHSSSCCCEEEECCCCCEEEECHHHHHHCTTHHHHHHHHHTGGGGCCTTCCCEEEEESSHHH-HHHHHHHHHH
T ss_pred HHHHHHhhccCCCccEEEECCCCCeEEEeCCCCccHHHHHHHHHHHHHcCCCCCcCCCCEEEEeCCccH-HHHHHHHHHH
Confidence 99998773 9999999999999999999999 999999999999987 9999999999999 99 7999999998
Q ss_pred HHhc-------------------------CcEEe-cCccccccc-c-C-----CC---CCcccccccCceEEEEEeCCHH
Q 005798 527 LQHE-------------------------GVGLF-GGPRASKLL-Q-I-----PE---TRLFHHEYNSMVCTVEIVDDVR 570 (676)
Q Consensus 527 ~~~~-------------------------~~~~~-g~~~~~~~~-p-v-----~~---~~~~~eE~FGPVl~i~~~~~~d 570 (676)
++++ |++++ |+. ...++ | | ++ |++++||+||||++|++|+|+|
T Consensus 314 ~~~~~~gp~~~~~~~~~~~~~v~~~~~~~Ga~~~~gg~-~g~~~~Ptvl~~~~~~~~~~~i~~eEiFGPVl~v~~~~~~d 392 (510)
T 1ez0_A 314 IRQQSPSTLLTPGIRDSYQSQVVSRGSDDGIDVTFSQA-ESPCVASALFVTSSENWRKHPAWEEEIFGPQSLIVVCENVA 392 (510)
T ss_dssp HHHCCCBCCSSHHHHHHHHHHHHHHHTSTTEEEEECCC-CTTSBCCEEEEEEHHHHHHCGGGGSCCCSSEEEEEEESSHH
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEecCC-CCCEecCEEEEecCCccccCHHHcCCccCCeEEEEEeCCHH
Confidence 8764 33443 543 22233 5 3 24 8999999999999999999999
Q ss_pred HHHHHHHccCCCceeEEEecCH--HHHHHHHhcc--CeeeEEEcCCCC---CCCCCcccC-cccccccccccccccccch
Q 005798 571 AAIDHIHQHGSAHTDCIVAEDQ--KVAETFLCQV--DSAAVFHNASTR---FCDGARFGL-GAEVGISTSRIHARGPVGV 642 (676)
Q Consensus 571 eAi~~aN~~~~GL~a~vft~d~--~~a~~~~~~l--~~G~v~iN~~~~---~~~~~pfG~-g~~~G~~~~~~~~~g~~g~ 642 (676)
|||+++|+++|||++||||+|. ++++++++++ ++|+|+||++.. ..+..|||| +++||+|++ +++|++|+
T Consensus 393 eai~~aN~~~~gLaa~v~t~d~~~~~a~~~~~~l~~~aG~V~iN~~~~~~~~~~~~pfGG~~~~sG~g~~--~~~G~~gl 470 (510)
T 1ez0_A 393 DMLSLSEMLAGSLTATIHATEEDYPQVSQLIPRLEEIAGRLVFNGWPTGVEVGYAMVHGGPYPASTHSAS--TSVGAEAI 470 (510)
T ss_dssp HHHHHHHTCCCEEEEEEECCGGGHHHHHHHHHHHHTTEEEEEESSCSSCCCCSSSCCCCCSTTSCSCSSC--CSSSGGGG
T ss_pred HHHHHHhcCCCCeEEEEEccCcCHHHHHHHHHHHhhcccEEEECCCCccCccCCCCCCCCCCCCcCCCCC--CCccHHHH
Confidence 9999999999999999999987 8999999999 899999998754 346789998 688888743 24699999
Q ss_pred hcceeEEEEE
Q 005798 643 EGLLTTRWIL 652 (676)
Q Consensus 643 ~~ft~~k~v~ 652 (676)
++|++.|++.
T Consensus 471 ~~~~~~k~~~ 480 (510)
T 1ez0_A 471 HRWLRPVAYQ 480 (510)
T ss_dssp GGGEEEEEEE
T ss_pred HHhheEEEEc
Confidence 9999998764
No 45
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}
Probab=100.00 E-value=4.8e-75 Score=655.33 Aligned_cols=403 Identities=15% Similarity=0.102 Sum_probs=336.4
Q ss_pred HHHHHhCCcee-eEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 005798 228 IIKVLEGKRVG-TLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 306 (676)
Q Consensus 228 i~~~~tg~~iG-T~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~ 306 (676)
+.+|.+|+.++ ++...+ .+|+++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 44 v~nP~tg~~i~~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 117 (528)
T 3v4c_A 44 TFASAPAHGPAHDFAVGT------VELVNRACEAAEEAFWTYGYSSRKERAAFLRAIADEIEARAEAITEIGSQETGLPE 117 (528)
T ss_dssp EEECCCSSSCCCEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ccCCCCCCEeeeEeCCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 45678899887 887777 88999999999999999999999999999999999999999999999988775543
Q ss_pred hhchhHHHHHHhhcChHHHHHHHHHHHHHhccccc---ccccc----cccccCCCcEEEEEeeceeEEEEEcCC-Chhh-
Q 005798 307 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP---IGQIL----KRTELADGLILEKTSCPLGVLLIVFES-RPDA- 377 (676)
Q Consensus 307 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~~- 377 (676)
. ++. .|+...++.++++++..+. .+... +......+...+++++|+|||++|+|| ||..
T Consensus 118 ~----~a~--------~ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~ 185 (528)
T 3v4c_A 118 A----RLN--------GERGRTTGQLRLFADHIEKGDYLDRRVDAAMPERQPAPRQEIRLVQRPVGPVAVFGASNFPLAF 185 (528)
T ss_dssp H----HHH--------HHHHHHHHHHHHHHHHHHHCGGGCCEEECCBTTCSSSCBCCEEEEEEECSCEEEECCSSSTTTT
T ss_pred H----HHH--------HHHHHHHHHHHHHHHHHhhccccccccccccccccCCCCCcceeEeeCCcEEEEECCCcchHHH
Confidence 1 221 2455555556655543221 11111 100001233467889999999999999 5864
Q ss_pred H--HHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHH
Q 005798 378 L--VQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNK 453 (676)
Q Consensus 378 ~--~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~ 453 (676)
. .++++|||++||+||+|||+.||+|+..+++++.++|.++ +|+|+||+|+| +.++++.|..||+||+|+||||++
T Consensus 186 ~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~~l~~aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~V~fTGS~~ 265 (528)
T 3v4c_A 186 STAGGDTAAALAAGCPVVVKGHSAHPGTGEIVAEAVDAAIRKTGVHPGVFSLIQGGSRDVGHALVQHPHIKAVGFTGSLA 265 (528)
T ss_dssp STTSHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCHHHHHHHHHCTTCCEEEEESCHH
T ss_pred hhhhhhhHHHHhcCCEEEEECCCCCcHHHHHHHHHHHHHHHhcCCCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEECChH
Confidence 2 3899999999999999999999999999999999988889 99999999996 557888888899999999999999
Q ss_pred HHHHHHHhc---C--CCEEeecCCcceEEEcCCC---CHHHHHHHHHHhcCCCCc-cccccceEEEeCc-cCChhHHHHH
Q 005798 454 LVSQIKEST---K--IPVLGHADGICHVYVDKSA---NLDVAKNIVIDAKIDYPA-ACNAMETLLVHKD-LACNGALNEL 523 (676)
Q Consensus 454 ~g~~i~~~a---~--~~~~lElGGk~p~iV~~dA---Dl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~-i~d~~f~~~l 523 (676)
+|+.|++.+ . ||+++|||||||+||++|| |+|.|++.+++++|.|+| .|+|++|+|||++ || |+|+++|
T Consensus 266 ~G~~i~~~aa~~~~~~pv~lElGGk~p~iV~~dAd~~dl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l 344 (528)
T 3v4c_A 266 GGRALFDLCAARPEPIPFFGELGSVNPMFLLPEALKARAETLGQGWAGSLTMGAGQFCTNPGIAVVIEGADA-DRFTTAA 344 (528)
T ss_dssp HHHHHHHHHHHSSSCCCEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHGGGGCCTTCCCEEEEESSHHH-HHHHHHH
T ss_pred HHHHHHHHHhhccCCCceEEecCCCCeEEECCCCChhhHHHHHHHHHHHHHhcCCCccccCcEEEEecccHH-HHHHHHH
Confidence 999999877 3 8999999999999999999 889999999999999988 9999999999997 99 7999999
Q ss_pred HHHHHhc-------------------------CcEEe-cCcccccc-c-c-C-----CC---CCcccccccCceEEEEEe
Q 005798 524 VVELQHE-------------------------GVGLF-GGPRASKL-L-Q-I-----PE---TRLFHHEYNSMVCTVEIV 566 (676)
Q Consensus 524 ~~~~~~~-------------------------~~~~~-g~~~~~~~-~-p-v-----~~---~~~~~eE~FGPVl~i~~~ 566 (676)
+++++++ |++++ |+.. .++ + | | ++ |++++||+||||++|++|
T Consensus 345 ~~~~~~~~~~~~~gp~~~~~~~~~v~~~~~~~Ga~v~~gG~~-~g~~~~PTvl~~~~~~~~~~~i~~eEiFGPVl~V~~~ 423 (528)
T 3v4c_A 345 VEALAKVAPQTMLTDGIAKAYRDGQARFATRNAVKPLLATES-SGRDASPNLFETTGAQFLADHALGEEVFGPLGLVVRV 423 (528)
T ss_dssp HHHHHTCCCEECSCHHHHHHHHHHHHHHHTCTTCEEEECCCC-CTTEECCEEEEEEHHHHHHCGGGGCCCSSSEEEEEEE
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHhCCCEEEeCCCc-CCceeccEEEEecCcccccChhhcccccCCeEEEEec
Confidence 9988764 33443 5443 333 3 5 3 24 799999999999999999
Q ss_pred CCHHHHHHHHHccCCCceeEEEec--CHHHHHHHHhccC--eeeEEEcCCCC---CCCCCcccC-ccccccccccccccc
Q 005798 567 DDVRAAIDHIHQHGSAHTDCIVAE--DQKVAETFLCQVD--SAAVFHNASTR---FCDGARFGL-GAEVGISTSRIHARG 638 (676)
Q Consensus 567 ~~~deAi~~aN~~~~GL~a~vft~--d~~~a~~~~~~l~--~G~v~iN~~~~---~~~~~pfG~-g~~~G~~~~~~~~~g 638 (676)
+|+||||+++|+++|||++||||+ |.+++++++++++ +|+|+||+.+. ..+.+|||| .+.||+| +.+.+|
T Consensus 424 ~~~deAi~~aN~~~~GL~a~v~t~d~d~~~a~~~a~~l~~~aG~V~vN~~~~~~~~~~~~pfGG~~~~Sg~g--r~~~~G 501 (528)
T 3v4c_A 424 GSPAEMEELARGFQGQLTATIHMDAGDLETARRLRPVLERKAGRVLVNGFPTGVEVVDSMVHGGPYPASTNF--GATSVG 501 (528)
T ss_dssp SSHHHHHHHHHHCCCEEEEEEECCGGGHHHHHHHHHHHHHHEEEEEESSCTTCCCCSTTCCCCCTTTTBSCT--TCCSSS
T ss_pred CCHHHHHHHHhcCCCCceEEEEcCCCCHHHHHHHHHHHhhcCcEEEEcCCCCCCccCCCCCCCCCCCCCCCC--CCCCCc
Confidence 999999999999999999999999 8999999999998 99999999643 247789999 8888876 333459
Q ss_pred ccchhcceeEEEEE
Q 005798 639 PVGVEGLLTTRWIL 652 (676)
Q Consensus 639 ~~g~~~ft~~k~v~ 652 (676)
++|+++|++.|++-
T Consensus 502 ~~gl~~~~~~k~~q 515 (528)
T 3v4c_A 502 TMSIRRFLRPVAYQ 515 (528)
T ss_dssp GGGGGGGEEEEEEE
T ss_pred HHHHHHhchhHHhh
Confidence 99999999999753
No 46
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.7e-73 Score=637.19 Aligned_cols=392 Identities=16% Similarity=0.112 Sum_probs=331.4
Q ss_pred HHHhCCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhhc
Q 005798 230 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAG 309 (676)
Q Consensus 230 ~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g 309 (676)
+|.+|+.++++...+ .+++++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++.+|++++..
T Consensus 26 ~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~-- 97 (490)
T 3ju8_A 26 DPVGQGVVWSGRGAD------ATQVDAAVCAAREAFPAWARRPLEQRIELLERFAATLKSRADELARVIGEETGKPLW-- 97 (490)
T ss_dssp CTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH--
T ss_pred CCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--
Confidence 577899999988888 889999999999999999999999999999999999999999999999887754421
Q ss_pred hhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHHH
Q 005798 310 YAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAI 386 (676)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~AL 386 (676)
++ ..|+..+++.+++++...+. .+...+. ..+...+++++|+|||++|+|| ||. +.+++++|||
T Consensus 98 --ea--------~~ev~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~AL 164 (490)
T 3ju8_A 98 --ES--------ATEVTSMVNKVAISVQAFRERTGEKSGP---LADATAVLRHKPHGVVAVFGPYNFPGHLPNGHIVPAL 164 (490)
T ss_dssp --HH--------HHHHHHHHHHHHHHHHHHHHHSCCEEEE---ETTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHH
T ss_pred --HH--------HHHHHHHHHHHHHHHHHHHHhcCCcccc---CCCCeeeEEECCCCEEEEECCCcchHHHHHHHHHHHH
Confidence 22 12566666666665543321 2222211 1123456679999999999999 585 6789999999
Q ss_pred HhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHHhcC--
Q 005798 387 RSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK-- 463 (676)
Q Consensus 387 aaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~-- 463 (676)
++||+||+|||+.||+|+.++++++.+ + +|+|++|+|+|+.++++.|..||+||+|+||||+++|+.|++.+.
T Consensus 165 aaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~~aa~~ 240 (490)
T 3ju8_A 165 LAGNCVVFKPSELTPKVAELTLKAWIQ----AGLPAGVLNLVQGGRETGVALAAHRGLDGLFFTGSSRTGNLLHSQFGGQ 240 (490)
T ss_dssp HHTCEEEEECCTTCHHHHHHHHHHHHH----TTCCTTTEEECCCSHHHHHHHHTCTTCSEEEEESCHHHHHHHHHHTTTC
T ss_pred HcCCeEEEECCCCCcHHHHHHHHHHHH----hCcCcCeEEEEeCCHHHHHHHHhCCCcCEEEEECcHHHHHHHHHHhhcc
Confidence 999999999999999999999999986 7 999999999976678888889999999999999999999999874
Q ss_pred -CCE-EeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCcc-CChhHHHHHHHHHHhcCc-------
Q 005798 464 -IPV-LGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDL-ACNGALNELVVELQHEGV------- 532 (676)
Q Consensus 464 -~~~-~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i-~d~~f~~~l~~~~~~~~~------- 532 (676)
+|+ +||||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++ | |+|+++|+++++++.+
T Consensus 241 ~~~v~~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l~~~~~~~~~G~~~~~~ 319 (490)
T 3ju8_A 241 PQKILALEMGGNNPLVVEEVADLDAAVYTIIQSAFISAGQRCTCARRLLVPQGAWG-DALLARLVAVSATLRVGRFDEQP 319 (490)
T ss_dssp TTSEEEEECCCCEEEEECCCSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEESSHHH-HHHHHHHHHHHHHCCBCCTTCSS
T ss_pred CCCcEEeecCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCCEEEEECCccH-HHHHHHHHHHHHhccCCCCCCCC
Confidence 898 7999999999999999999999999999999987 99999999999996 9 7999999999887532
Q ss_pred ----------------------------EE-ecCccc--ccc-c-c-C----CCCCcccccccCceEEEEEeCCHHHHHH
Q 005798 533 ----------------------------GL-FGGPRA--SKL-L-Q-I----PETRLFHHEYNSMVCTVEIVDDVRAAID 574 (676)
Q Consensus 533 ----------------------------~~-~g~~~~--~~~-~-p-v----~~~~~~~eE~FGPVl~i~~~~~~deAi~ 574 (676)
++ +|+... .++ + | | +++++++||+||||++|++|+|+||||+
T Consensus 320 ~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~PTvl~v~~~~~i~~eEiFGPVl~v~~~~~~~eAi~ 399 (490)
T 3ju8_A 320 APFMGAVISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDGAALLTPGILDVSAVAERPDEEFFGPLLQVIRYSDFAAAIR 399 (490)
T ss_dssp CCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCCCSTTSCCCCCEEEECTTCSSCCCCCCCSSEEEEEEESSHHHHHH
T ss_pred cCccccccCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCCEEccEEEEeCCCCccccccccccEEEEEEeCCHHHHHH
Confidence 11 233221 122 2 4 2 4689999999999999999999999999
Q ss_pred HHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCC-CCCCcccCcccccccccccccccccchhcceeEEEEEE
Q 005798 575 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 653 (676)
Q Consensus 575 ~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~-~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~ 653 (676)
++|+++|||++||||+|.++++++++++++|+|+||+++.. .+..||||.+.||. .++++|++.|+|++
T Consensus 400 ~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~~~SG~----------~~~~~~~~~k~v~~ 469 (490)
T 3ju8_A 400 EANATQYGLAAGLLSDSRERFEQFLVESRAGIVNWNKQLTGAASSAPFGGIGASGN----------HRPSAYYAADYCAY 469 (490)
T ss_dssp HHHCSSCCSEEEEECSCHHHHHHHHHHCCSSEEEESSCSSCCCTTSEECCCGGGBS----------SCCEETTHHHHHEE
T ss_pred HHhcCCCCceEEEEcCCHHHHHHHHHhcCcceEEECCCcCCCCCCCCcCCccccch----------hHHHhhheeEEEEE
Confidence 99999999999999999999999999999999999997653 46789998877643 47899999999988
Q ss_pred cCce
Q 005798 654 GNGH 657 (676)
Q Consensus 654 ~~~~ 657 (676)
+...
T Consensus 470 ~~~~ 473 (490)
T 3ju8_A 470 PVAS 473 (490)
T ss_dssp EEEE
T ss_pred eccc
Confidence 7543
No 47
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}
Probab=100.00 E-value=2.3e-72 Score=666.52 Aligned_cols=400 Identities=17% Similarity=0.180 Sum_probs=342.6
Q ss_pred HHHHh-CCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 005798 229 IKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 307 (676)
Q Consensus 229 ~~~~t-g~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~ 307 (676)
.+|.+ ++.+|++..++ .+++++|+++|++||+.|+.+|.++|.++|++++++|++++++|++++++|.+++..
T Consensus 550 ~nPa~~~~~i~~v~~a~------~~dv~~Av~aA~~A~~~W~~~~~~eRa~iL~~~Adll~~~~~eLa~~~~~E~GK~~~ 623 (1026)
T 4f9i_A 550 VNPNKPSEVLGQICQAG------TTEVGDAIAAAKAAFPAWRDTDPRTRAEYLLKAAQAARKRLFELSAWQVLEIGKQWD 623 (1026)
T ss_dssp EETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCHH
T ss_pred eCCCCCCceEEEEeCCC------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 55665 67788888877 889999999999999999999999999999999999999999999998876544321
Q ss_pred hchhHHHHHHhhcChHHHHHHHHHHHHHhcccccc-cccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHH
Q 005798 308 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 384 (676)
Q Consensus 308 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 384 (676)
++ ..|+..+++.+++++...+.. +...+. ...+...++.++|+|||++|+|| ||. +.++++++
T Consensus 624 ----ea--------~~Ev~~aid~lr~~a~~~~~~~~~~~~~--~~~g~~~~~~~~PlGVV~~I~PwNfPl~i~~~~~a~ 689 (1026)
T 4f9i_A 624 ----QA--------YADVTEAIDFLEYYAREMIRLGQPQRVG--HAPGELNHYFYEPKGVAAVIAPWNFPLAISMGMASA 689 (1026)
T ss_dssp ----HH--------HHHHHHHHHHHHHHHHHHHHHTSCEEEC--CCTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHH
T ss_pred ----hH--------HHHHHHHHHHHHHHHHHHHHhcCCcccc--CCCCccceeEeecCceEEEeCCCccHHHHHHHHHHH
Confidence 22 236778888888887654332 211111 12345677889999999999999 584 67899999
Q ss_pred HHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhc
Q 005798 385 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 462 (676)
Q Consensus 385 ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a 462 (676)
||++||+||+|||+.||+++..+++++.+ + +|+|+||+|+| +.++++.|..||+|++|+||||+++|+.|++.+
T Consensus 690 ALaaGNtVVlKPse~tplsa~~l~ell~e----AGlP~gvvnvV~G~g~~vg~~L~~hp~v~~V~FTGSt~vg~~I~~~a 765 (1026)
T 4f9i_A 690 AIVTGNCVVFKPSGITSIIGWHLVELFRE----AGLPEGVFNFTPGRGSVMGDYLVDHPDISLIAFTGSMETGLRIIERA 765 (1026)
T ss_dssp HHHTTCEEEEECCGGGHHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHHHCTTEEEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCEEEEEcCccchHHHHHHHHHHHH----hCcCCCeEEEEecCcHHHHHHHHhCCCCCEEEeCCCHHHHHHHHHHh
Confidence 99999999999999999999999999987 7 99999999996 667888888999999999999999999999876
Q ss_pred C---------CCEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcCc
Q 005798 463 K---------IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV 532 (676)
Q Consensus 463 ~---------~~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~ 532 (676)
+ +|+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||++|| |+|+++|+++++++.+
T Consensus 766 a~~~~~~~~lkpv~lElGGknp~IV~~dADld~Aa~~iv~saf~~aGQ~C~A~~rl~V~~~i~-d~f~~~L~~~~~~l~v 844 (1026)
T 4f9i_A 766 AKVHPGQANVKKIISEMGGKNAIIIDDDADLDEAVPHVLYSAFGFQGQKCSACSRVIVLDAVY-DKFIERLVSMAKATKV 844 (1026)
T ss_dssp TSCCTTCCSCCEEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGH-HHHHHHHHHHHHHCCB
T ss_pred hcccccccCccceEEecCCCCeEEECCCCCHHHHHHHHHHHHHhCCCCCCCCCceEEecHHHH-HHHHHHHHHHHHhccc
Confidence 4 7999999999999999999999999999999999987 999999999999999 7999999999987632
Q ss_pred ---------------------------------E-EecCccc-c-ccc--c-C-----CCCCcccccccCceEEEEEeCC
Q 005798 533 ---------------------------------G-LFGGPRA-S-KLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD 568 (676)
Q Consensus 533 ---------------------------------~-~~g~~~~-~-~~~--p-v-----~~~~~~~eE~FGPVl~i~~~~~ 568 (676)
+ ++|+... . ++| | | +++++++||+||||++|++|+|
T Consensus 845 G~p~d~~t~~Gpvi~~~~~~~v~~~i~~a~~~G~~v~gG~~~~~~G~fv~PTvl~~v~~~~~i~~eEiFGPVl~V~~~~d 924 (1026)
T 4f9i_A 845 GPSEDPANYMGAVADDKAMKSIKEYAEIGKREGHVLYESPVPAGEGYFVPMTIIGGIKPEHRIAQEEIFGPVLAVMRAKD 924 (1026)
T ss_dssp CCTTSTTCSBCCCSSHHHHHHHHHHHHHHHHHSEEEEECCCCSSSSCCCCCEEEESCCTTSGGGTSCCCSSEEEEEEESS
T ss_pred CCcccccCccccccCHHHHHHHHHHHHHHHhCCeEEecCCcCCCCCceecceeeecCCCCccccCceecCcEEEEEEeCC
Confidence 1 2344321 1 333 5 2 4689999999999999999999
Q ss_pred HHHHHHHHHccCCCceeEEEecCHHHHHHHHhccCeeeEEEcCCCCC--CCCCcccCcccccccccccccccccchhcce
Q 005798 569 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGLL 646 (676)
Q Consensus 569 ~deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~~G~v~iN~~~~~--~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft 646 (676)
+||||+++|+++|||++||||+|.++++++++++++|+|+||+.+.. .+..||||.+.||+|. +++|++++++|+
T Consensus 925 ~deAI~~aN~t~yGLt~~V~t~d~~~a~~~~~~l~aG~v~IN~~~~~~~~~~~PFGG~k~SG~G~---~~gG~~~l~~f~ 1001 (1026)
T 4f9i_A 925 FDQAIEWANSTQFALTGGIFSRSPEHLAKARREFRVGNLYINRNNTGALVERQPFGGARMSGVGT---KAGGPDYLLHFM 1001 (1026)
T ss_dssp HHHHHHHHTCSSCCSEEEEECCCHHHHHHHHHHSCCSEEEESSCSCCCCTTTSCBCCCGGGBSSC---CBTSTTTGGGGE
T ss_pred HHHHHHHHHcCCCCCeEEEECCCHHHHHHHHHhCCEeeEEEcCCCCCCCCCCCCCCCcCcCCCCC---CcCCHHHHHHhc
Confidence 99999999999999999999999999999999999999999997643 3678999999998762 356899999999
Q ss_pred eEEEEEEcCc
Q 005798 647 TTRWILRGNG 656 (676)
Q Consensus 647 ~~k~v~~~~~ 656 (676)
+.|+|..+..
T Consensus 1002 ~~k~v~~~~~ 1011 (1026)
T 4f9i_A 1002 DPRVVTENTM 1011 (1026)
T ss_dssp EEEEEEEECC
T ss_pred eEEEEEEecc
Confidence 9999998764
No 48
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Probab=100.00 E-value=2.3e-72 Score=633.96 Aligned_cols=399 Identities=16% Similarity=0.173 Sum_probs=328.7
Q ss_pred HHHHh-CCceeeEEecCCccccchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc-HHHHHHHHHHHHHHHH
Q 005798 229 IKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEAN-ESLIKVENEADVAAAQ 306 (676)
Q Consensus 229 ~~~~t-g~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~-~~~l~~~~~~d~~~~~ 306 (676)
.++.+ ++.++++..++ .+|+++|+++|++||+.|+.+|.++|.++|++++++|+++ +++|++++..|++++.
T Consensus 82 ~~P~~~~~~i~~~~~a~------~~dv~~Av~aA~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~~el~~~~~~e~Gk~~ 155 (563)
T 4e3x_A 82 LSPFNHAHKVAKFCYAD------KALLNRAIDAALAARKEWDLKPMADRAQVFLKAADMLSGPRRAEVLAKTMVGQGKTV 155 (563)
T ss_dssp EETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHCCCH
T ss_pred eCCCCCCcEEEEEeCCC------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHcCCCH
Confidence 34555 57788888777 8899999999999999999999999999999999999999 9999998877664432
Q ss_pred hhchhHHHHHHhhcChHHHHHHHHHHHHHhccccc-ccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHH
Q 005798 307 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 383 (676)
Q Consensus 307 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~ 383 (676)
.++..+ ++...++.++++++..+. .+..... .+.+...+.++.|+|||++|+|| ||. +..++++
T Consensus 156 ----~ea~~e-------~v~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~r~p~GVV~~I~PwNfP~~~~~~~~a 222 (563)
T 4e3x_A 156 ----IQAEID-------AAAELIDFFRFNAKFAVELEGEQPIS--VPPSTNHTVYRGLEGFVAAISPFNFTAIGGNLAGA 222 (563)
T ss_dssp ----HHHHHH-------TTHHHHHHHHHHHHHHHHHTTCCCCC--CTTEEEEEECCBCSSEEEEECCSSCHHHHHHHHHH
T ss_pred ----HHHhHH-------HHHHHHHHHHHHHHHHHHhhCCCccC--CCCCcceEEEecCceEEEEECCchHHHHHHHHHHH
Confidence 122211 144555555555543221 1211110 11233456677888999999999 585 4578999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHh
Q 005798 384 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 461 (676)
Q Consensus 384 ~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~ 461 (676)
||| +||+||+|||+.||+++.++++++.+ + ||+||||+|+| +.++++.|..||+|++|+||||+++|+.|++.
T Consensus 223 pAL-aGNtVVlKPs~~tp~sa~~l~~ll~e----AGlP~Gvvnvv~g~g~~~g~~L~~hp~v~~I~FTGSt~vG~~i~~~ 297 (563)
T 4e3x_A 223 PAL-MGNVVLWKPSDTAMLASYAVYRILRE----AGLPPNIIQFVPADGPTFGDTVTSSEHLCGINFTGSVPTFKHLWRQ 297 (563)
T ss_dssp HHH-TTCCEEEECCGGGHHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTTCTTEEEEEEESCHHHHHHHHHH
T ss_pred Hhh-cCCEEEEECCCCChHHHHHHHHHHHH----hCCCCCeEEEEeCCcHHHHHHHHhCCCcCEEEEECCHHHHHHHHHH
Confidence 999 59999999999999999999999987 7 99999999996 56788999999999999999999999999987
Q ss_pred cC---C------CEEeecCCcceEEEcCCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcC
Q 005798 462 TK---I------PVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG 531 (676)
Q Consensus 462 a~---~------~~~lElGGk~p~iV~~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~ 531 (676)
++ + |+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 298 aa~~lk~~~~~prv~lElGGk~p~IV~~dADld~Aa~~iv~~~f~~~GQ~C~A~~rv~V~~si~-d~f~~~l~~~~~~l~ 376 (563)
T 4e3x_A 298 VAQNLDRFRTFPRLAGECGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKCSACSRLYVPKSLW-PQIKGRLLEEHSRIK 376 (563)
T ss_dssp HHHTTTTCSSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGH-HHHHHHHHHHHHTCC
T ss_pred HHhhCCccccCCceeccCCCCCceeeCCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEecchH-HHHHHHHHHHHHhcc
Confidence 62 5 499999999999999999999999999999999987 999999999999999 799999999998752
Q ss_pred c------------------------------------EE-ecCccc--cccc--c-C-----CCCCcccccccCceEEEE
Q 005798 532 V------------------------------------GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVE 564 (676)
Q Consensus 532 ~------------------------------------~~-~g~~~~--~~~~--p-v-----~~~~~~~eE~FGPVl~i~ 564 (676)
+ ++ .||... .++| | | ++|++++||+||||++|+
T Consensus 377 vGdp~~d~~~~~Gpli~~~~~~rv~~~i~~a~~~~ga~v~~GG~~~~~~G~fv~PTvl~~v~~~~~i~~eEiFGPVl~V~ 456 (563)
T 4e3x_A 377 VGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVY 456 (563)
T ss_dssp BSCTTTCTTCSBCCCSCHHHHHHHHHHHHHHHHCTTEEEEECCCEECSSSCEECCEEEEESCTTCGGGTSCCCSSEEEEE
T ss_pred CCCcccCcCCccCCCcCHHHHHHHHHHHHHHhhcCCCEEEeCCccCCCCCcEecCEEEecCCCCChhhcCCCcCeEEEEE
Confidence 1 12 233221 2333 5 2 478999999999999999
Q ss_pred EeCC--HHHHHHHH-HccCCCceeEEEecCHHHHHHHHhccC--eeeEEEcCCCCC--CCCCcccCcccccccccccccc
Q 005798 565 IVDD--VRAAIDHI-HQHGSAHTDCIVAEDQKVAETFLCQVD--SAAVFHNASTRF--CDGARFGLGAEVGISTSRIHAR 637 (676)
Q Consensus 565 ~~~~--~deAi~~a-N~~~~GL~a~vft~d~~~a~~~~~~l~--~G~v~iN~~~~~--~~~~pfG~g~~~G~~~~~~~~~ 637 (676)
+|+| +||||+++ |+++|||++||||+|.+++++++++++ +|+|+||+.+.. .+..||||.+.||++. +++
T Consensus 457 ~~~d~~~deAi~~ann~s~yGLta~V~t~d~~~~~~~~~~l~~~aG~v~IN~~~~~~~~~~~PFGG~k~SG~g~---~~~ 533 (563)
T 4e3x_A 457 VYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASGTND---KPG 533 (563)
T ss_dssp EECGGGHHHHHHHHHHSSSEESEEEEECSCHHHHHHHHHHTTTTCSEEEESSCSCCCCTTTSCCCCEETTBCCC---CTT
T ss_pred EECCCCHHHHHHHHHcCCCCCCEEEEEeCCHHHHHHHHHhhhcCeeEEEEcCCCCCCCcCCCCCCCccccCCCC---ccC
Confidence 9996 79999999 799999999999999999999999865 999999987543 4678999999998762 467
Q ss_pred cccchhcceeEEEEEEcC
Q 005798 638 GPVGVEGLLTTRWILRGN 655 (676)
Q Consensus 638 g~~g~~~ft~~k~v~~~~ 655 (676)
|++++++|++.|+|....
T Consensus 534 G~~~l~~~~~~k~v~~~~ 551 (563)
T 4e3x_A 534 GPHYILRWTSPQVIKETH 551 (563)
T ss_dssp STTGGGGGBCCEEEEEEC
T ss_pred CHHHHHHhCceEEEEEeC
Confidence 999999999999998753
No 49
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Probab=100.00 E-value=4.8e-71 Score=653.92 Aligned_cols=384 Identities=16% Similarity=0.152 Sum_probs=328.4
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChHHHHHHHH
Q 005798 251 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 330 (676)
Q Consensus 251 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 330 (676)
.+++++++++|++||+.|+.+|.++|.++|++++++|++|+++|++++++|++++. .++ ..|+..+++
T Consensus 549 ~~dv~~Av~aA~~A~~~W~~~~~~eR~~iL~~~ad~l~~~~~eLa~~~~~E~GK~~----~ea--------~~Ev~~ai~ 616 (1001)
T 3haz_A 549 PDQAHAAVAAARAGFAGWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTL----DDA--------LSELREAAD 616 (1001)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCH----HHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh----hHH--------HHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999887665432 122 247888889
Q ss_pred HHHHHhcccccc-cccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHHHHhCCEEEEeCCcchHHHHHHH
Q 005798 331 SIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAIL 407 (676)
Q Consensus 331 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l 407 (676)
.+++|+...+.. +..... ....+...+++++|+|||++|+|| ||. +.++++++||++||+||+||||.||+|+..+
T Consensus 617 ~lr~~a~~a~~~~g~~~~~-~~~~g~~~~~~~~P~GVV~~I~PwNfPl~i~~~~va~ALAAGNtVVlKPse~tp~ta~~l 695 (1001)
T 3haz_A 617 FCRYYAAQGRKLFGSETAM-PGPTGESNALTMRGRGVFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREA 695 (1001)
T ss_dssp HHHHHHHHHHHHHSSCEEC-CCCTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTCHHHHHHH
T ss_pred HHHHHHHHHHhhcCccccc-cCCCCCceEEEEeCCcEEEEEcCCCChHHHHHHHHHHHHHcCCEEEEecchhhHHHHHHH
Confidence 999988655432 222111 112356678899999999999999 585 6789999999999999999999999999999
Q ss_pred HHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhc------CCCEEeecCCcceEEEc
Q 005798 408 HKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST------KIPVLGHADGICHVYVD 479 (676)
Q Consensus 408 ~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a------~~~~~lElGGk~p~iV~ 479 (676)
++++.+ + +|+|+||+|+| +++ ++.|..||+||+|+||||+++|+.|++.+ .+|+++|||||||+||+
T Consensus 696 ~ell~e----AGlP~gvv~vV~G~g~~-g~~L~~~p~Vd~V~FTGSt~vGr~I~~~aA~~~~~l~pv~lElGGknp~IV~ 770 (1001)
T 3haz_A 696 VALLHE----AGIPKSALYLVTGDGRI-GAALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIAD 770 (1001)
T ss_dssp HHHHHH----HTCCTTTEEECCCCHHH-HHHHHHCTTCCEEEEESCHHHHHHHHHHHHHSSSCCCCEEEECCCCEEEEEC
T ss_pred HHHHHH----hCcCcCcEEEEecCchH-HHHHHhCCCcCEEEecCCHHHHHHHHHHHhcccCCCceEEeecCCcceEEEc
Confidence 999987 7 99999999996 445 88888999999999999999999998764 38999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHHhcCc--------------------------
Q 005798 480 KSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV-------------------------- 532 (676)
Q Consensus 480 ~dADl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~-------------------------- 532 (676)
+|||+|.|++.+++|+|.|+| +|+|++|+|||++|| |+|+++|+++++++.+
T Consensus 771 ~dADld~Aa~~iv~s~f~naGQ~C~A~~rllV~e~i~-d~f~~~L~~~~~~l~vGdp~d~~t~~Gpli~~~~~~rv~~~i 849 (1001)
T 3haz_A 771 ATALPEQVADDVVTSAFRSAGQRCSALRLLFVQEDVA-DRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAHI 849 (1001)
T ss_dssp TTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTSTTCSBCCCSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCCCceeeccHHHH-HHHHHHHHHHHHhcCCCCcccccCccCCCCCHHHHHHHHHHH
Confidence 999999999999999999988 999999999999999 7999999999987632
Q ss_pred -------EEecCccc-cc-cc-c-C---CCCCcccccccCceEEEEEeCC--HHHHHHHHHccCCCceeEEEecCHHHHH
Q 005798 533 -------GLFGGPRA-SK-LL-Q-I---PETRLFHHEYNSMVCTVEIVDD--VRAAIDHIHQHGSAHTDCIVAEDQKVAE 596 (676)
Q Consensus 533 -------~~~g~~~~-~~-~~-p-v---~~~~~~~eE~FGPVl~i~~~~~--~deAi~~aN~~~~GL~a~vft~d~~~a~ 596 (676)
+++|+... .+ ++ | | +++.+++||+||||++|++|++ +||||+++|+++|||++||||+|.++++
T Consensus 850 ~~a~~~g~v~gg~~~~~G~fv~PTvl~~~~~~~~~eEiFGPVL~V~~~~~~~ldeAI~~aN~t~yGLta~V~T~d~~~a~ 929 (1001)
T 3haz_A 850 ARMKTEARLHFAGPAPEGCFVAPHIFELTEAGQLTEEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDDSIE 929 (1001)
T ss_dssp HHHHHHSEEEEECCCCSSSCCCCEEEECSSGGGCCSCCCSSEEEEEEECGGGHHHHHHHHHHTCCCSEEEEECSCHHHHH
T ss_pred HHHHhcCeEeccccCCCCcEEeeEEecCCCHHHHhccccCcEEEEEEeCCCCHHHHHHHHHcCCCCceEEEEcCCHHHHH
Confidence 11222111 12 23 5 2 4678999999999999999996 8999999999999999999999999999
Q ss_pred HHHhccCeeeEEEcCCCCC--CCCCcccCcccccccccccccccccchhcceeEEEEEEcCc
Q 005798 597 TFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 656 (676)
Q Consensus 597 ~~~~~l~~G~v~iN~~~~~--~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~~ 656 (676)
++++++++|+|+||+++.. .+..||||.+.||+|. +++|++|+++|++.|+|+++..
T Consensus 930 ~~a~~l~aG~V~VN~~~~~~~~~~~PFGG~k~SG~G~---~~gG~~gl~~ft~~K~v~~~~~ 988 (1001)
T 3haz_A 930 AIIDRVQVGNIYVNRNMIGAVVGVQPFGGNGLSGTGP---KAGGPHYLARFATEQTVTINTA 988 (1001)
T ss_dssp HHHHHCCCSEEEESSCSCCCCTTTSCBCCCGGGBCCC---CBTSTTSGGGGEEEEEEEEECG
T ss_pred HHHHhCCeeeEEEeCCCcCCCCCCCCCCCcccCcCCC---CCCCHHHHHHhceeeEEEECCc
Confidence 9999999999999997654 3567999999998762 3568999999999999998754
No 50
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Probab=100.00 E-value=8.9e-71 Score=621.41 Aligned_cols=396 Identities=16% Similarity=0.145 Sum_probs=323.0
Q ss_pred HHHHhCCceeeEEecCCccccchhhHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 005798 229 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARES-SRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 307 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A~~A-~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~ 307 (676)
.+|.+|+.++++... .+|+++++++|++| |+.|+.+|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 27 ~nP~tg~~i~~~~~~-------~~dv~~Av~aA~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 99 (534)
T 2y53_A 27 TDPVTGVALVRVSSE-------GLDLARAFSFAREDGGAALRALTYAQRAARLADIVKLLQAKRGDYYAIATANSGTTRN 99 (534)
T ss_dssp ECTTTCCEEEEECCT-------TCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred ECCCCCCEEEEEeCC-------HHHHHHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH
Confidence 457788888887543 34899999999999 5999999999999999999999999999999999887755421
Q ss_pred hchhHHHHHHhhcChHHHHHHHHHHHHHhcccccc--------cccccccccCCCcEEEEEeece-eEEEEEcCC-Chh-
Q 005798 308 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI--------GQILKRTELADGLILEKTSCPL-GVLLIVFES-RPD- 376 (676)
Q Consensus 308 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~Pl-GVV~~I~p~-~P~- 376 (676)
++. .|+...++.+++++...+.. ++..+. ..+.....+.+++|+ |||++|+|| ||.
T Consensus 100 ----ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~P~~GVv~~I~PwN~P~~ 166 (534)
T 2y53_A 100 ----DSA--------VDIDGGIFTLSYYAKLGASLGEVHALRDGSAESL-SKDRSFSAQHVLSPTRGVALFINAFNFPSW 166 (534)
T ss_dssp ----HHH--------HHHHHHHHHHHHHHHHHHTTCSCSEEEEEEEEEC-STTSSEEEEEEEEECSSCEEEECCTTCTTH
T ss_pred ----HHH--------HHHHHHHHHHHHHHHHHHhccccccccCCccccC-CCCCcccceEEEecCCCEEEEECCCchHHH
Confidence 221 24556666666665432211 111111 001222457789997 999999999 585
Q ss_pred hHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHH
Q 005798 377 ALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKL 454 (676)
Q Consensus 377 ~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~ 454 (676)
+.+++++|||++||+||+||||.||+|+..+++++.++ . ||+|+||+|+| +.++++.| +++|+|+||||+++
T Consensus 167 ~~~~~~a~ALaaGN~VVlKPs~~tp~~~~~l~~l~~~a---G~lP~gvv~vv~g~~~~l~~~l---~~vd~V~FTGS~~~ 240 (534)
T 2y53_A 167 GLWEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDA---GILPPGALSIICGSSAGLLDQI---RSFDVVSFTGSADT 240 (534)
T ss_dssp HHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHHHHHH---TCSCTTSEEECCSCCTTSGGGC---CTTCEEEEESCHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHh---CCCCCCeEEEEeCChHHHHhcc---cccCEEEEECCHHH
Confidence 67899999999999999999999999999999999873 3 69999999996 33333332 57999999999999
Q ss_pred HHHHHHhc-----CCCEEeecCCcceEEEcCCC-----CHHHHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHH
Q 005798 455 VSQIKEST-----KIPVLGHADGICHVYVDKSA-----NLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNEL 523 (676)
Q Consensus 455 g~~i~~~a-----~~~~~lElGGk~p~iV~~dA-----Dl~~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l 523 (676)
||.|++.+ .||++||||||||+||++|| |||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|
T Consensus 241 G~~i~~~aa~a~~~k~v~lELGGk~p~iV~~dA~~~~~Dl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l 319 (534)
T 2y53_A 241 AATLRAHPAFVQRGARLNVQADSLNSAILCADATPDTPAFDLFIKEVVREMTVKSGQKCTAIRRAFVPEAAL-EPVLEAL 319 (534)
T ss_dssp HHHHHTSHHHHTTCCEEEEECCCCEEEEECTTCCTTSHHHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGH-HHHHHHH
T ss_pred HHHHHHhhhhhcCCCcEEEEcCCCCeEEECCCccccccCHHHHHHHHHHHHHhCCCCcccCCCEEEEeccHH-HHHHHHH
Confidence 99999764 59999999999999999999 999999999999999987 999999999999999 7999999
Q ss_pred HHHHHhcCc---------------------------------EE-ecCcc--------ccccc--c-C-----CC--CCc
Q 005798 524 VVELQHEGV---------------------------------GL-FGGPR--------ASKLL--Q-I-----PE--TRL 551 (676)
Q Consensus 524 ~~~~~~~~~---------------------------------~~-~g~~~--------~~~~~--p-v-----~~--~~~ 551 (676)
+++++++.+ ++ +|+.. ..++| | | ++ +++
T Consensus 320 ~~~~~~~~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~ga~~~~GG~~~~~~~~~~~~g~~~~PTvl~~v~~~~~~~i 399 (534)
T 2y53_A 320 KAKLAKITVGNPRNDAVRMGSLVSREQYENVLAGIAALREEAVLAYDSSAVPLIDADANIAACVAPHLFVVNDPDNATLL 399 (534)
T ss_dssp HHHHTTCCBBCTTSTTCSBCCCSCHHHHHHHHHHHHHHHTSSEEEEECTTSCCBSCCTTTSCCCCCEEEECSCGGGCSST
T ss_pred HHHHHhccCCCCCcCCCCccCCCCHHHHHHHHHHHHHHHcCCEEEECCcccccccccCCCCceecCEEEEecCccccCHH
Confidence 999876532 33 35532 12333 5 2 23 589
Q ss_pred ccccccCceEEEEEeC---CH-----HHHHHHHHccCCCceeEEEecCHHHHHHHHhcc--CeeeEEEcCCCC-------
Q 005798 552 FHHEYNSMVCTVEIVD---DV-----RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQV--DSAAVFHNASTR------- 614 (676)
Q Consensus 552 ~~eE~FGPVl~i~~~~---~~-----deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l--~~G~v~iN~~~~------- 614 (676)
++||+||||++|++|+ |+ ||||+++|+++|||++||||+|.++++++++++ ++|+|+||+++.
T Consensus 400 ~~eEiFGPVl~v~~~~~~~~~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~~aG~V~vN~~~~~~~~~~~ 479 (534)
T 2y53_A 400 HDVEVFGPVASVAPYRVTTDTNALPEAHAVALARRGQGSLVASIYSNDDAHLGRLALELADSHGRVHAISPSVQHSQTGH 479 (534)
T ss_dssp TTCCCSSSEEEEEEECCCCC---CTTHHHHHHHHTTSSEEEEEEECSCHHHHHHHHHHHTTTEEEEEEECGGGTTTCCCS
T ss_pred HhCCCcCCEEEEEEECCCCCcccCCHHHHHHHHhCCCCCceEEEECCCHHHHHHHHHHHHhhCCEEEEcCCccccccccc
Confidence 9999999999999999 99 999999999999999999999999999999999 899999998642
Q ss_pred --CCCCCcccCccccccccccccc-ccccchhcceeEEEEEEcC
Q 005798 615 --FCDGARFGLGAEVGISTSRIHA-RGPVGVEGLLTTRWILRGN 655 (676)
Q Consensus 615 --~~~~~pfG~g~~~G~~~~~~~~-~g~~g~~~ft~~k~v~~~~ 655 (676)
..+.+||||.++||+| ++ +|++|+++|++.|++....
T Consensus 480 ~~~~~~~pfGG~k~SG~G----r~~~g~~~l~~~~~~k~v~~~p 519 (534)
T 2y53_A 480 GNVMPMSLHGGPGRAGGG----EELGGLRALAFYHRRSAIQAAS 519 (534)
T ss_dssp SCCCTTSEECCSGGGCSC----CEESGGGGGGGGEEEEEEEEEH
T ss_pred CCCCCCCCCCCcccCCCC----CCcchHHHHHHHhhhheeecCH
Confidence 2467899999999886 34 5899999999999987644
No 51
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}
Probab=100.00 E-value=3e-69 Score=599.43 Aligned_cols=385 Identities=17% Similarity=0.226 Sum_probs=311.8
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChHHHHHHHH
Q 005798 251 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 330 (676)
Q Consensus 251 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 330 (676)
.+++++++++|++||+.|+.+|.++|.++|++++++|++++++|++++.+|++++. .++.. .+....++
T Consensus 11 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~----~e~~~-------~~~~~~~~ 79 (464)
T 3k9d_A 11 IQEVRNLIESANKAQKELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFGI----WQDKV-------IKNVFASK 79 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSC----HHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcCH----HHHHH-------HHHHHHHH
Confidence 56899999999999999999999999999999999999999999999887765432 12211 12344555
Q ss_pred HHHHHhcccccccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHHHHhCCEEEEeCCcchHHHHHHHH
Q 005798 331 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAILH 408 (676)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~ 408 (676)
.+.++++..+..|.... ..+...+++++|+|||++|+|| ||. +.++++++||++||+||+||||.||+|+..++
T Consensus 80 ~~~~~~~~~~~~g~~~~----~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VVlKps~~ap~t~~~l~ 155 (464)
T 3k9d_A 80 HVYNYIKDMKTIGMLKE----DNEKKVMEVAVPLGVVAGLIPSTNPTSTVIYKTLISIKAGNSIVFSPHPNALKAILETV 155 (464)
T ss_dssp HHHHHHTTCCCSEEEEE----ETTTTEEEEEEECCEEEEEECSSSHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHH
T ss_pred HHHHhhhcccccceecc----CCCceeEEEEecceEEEEECCCcChHHHHHHHHHHHHHhCCeEEEECCcchHHHHHHHH
Confidence 56555543333343211 2345577889999999999999 696 45799999999999999999999999999999
Q ss_pred HHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhcCCCEEeecC-CcceEEEcCCCCHH
Q 005798 409 KVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHAD-GICHVYVDKSANLD 485 (676)
Q Consensus 409 ~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~~~~~lElG-Gk~p~iV~~dADl~ 485 (676)
+++.+++.++ +|+|+||+|++ +.+.++.|..||+||+|+||||+.+.+..+ ...||+ +|+| ||+|+||++||||+
T Consensus 156 ~ll~~~~~~aG~P~gvv~vv~g~~~~~~~~L~~~~~vd~I~fTGs~~v~~~a~-~~~kpv-lelG~G~~p~iV~~dADl~ 233 (464)
T 3k9d_A 156 RIISEAAEKAGCPKGAISCMTVPTIQGTDQLMKHKDTAVILATGGSAMVKAAY-SSGTPA-IGVGPGNGPAFIERSANIP 233 (464)
T ss_dssp HHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTEEEEEECSCHHHHHHHT-TSSSCE-EEBCCCCCEEEECTTSCHH
T ss_pred HHHHHHHHHhCCCCCeEEEEeCCCHHHHHHHHhCCCCCEEEEeCChHHHHHHH-hcCCcE-EeeCCCCCeEEECCCCCHH
Confidence 9999988899 99999999996 556777788899999999999999877653 347999 6777 99999999999999
Q ss_pred HHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHHHH-------hcCc---------EEecCc---cc----c
Q 005798 486 VAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQ-------HEGV---------GLFGGP---RA----S 541 (676)
Q Consensus 486 ~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~-------~~~~---------~~~g~~---~~----~ 541 (676)
.|++.+++|+|+|+| +|+|++|+|||++|| |+|+++|+++.. +..+ .+ |.. +. .
T Consensus 234 ~Aa~~i~~~~~~n~Gq~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~-gp~i~~~~~~~i~ 311 (464)
T 3k9d_A 234 RAVKHILDSKTFDNGTICASEQSVVVERVNK-EAVIAEFRKQGAHFLSDAEAVQLGKFILRPNGSM-NPAIVGKSVQHIA 311 (464)
T ss_dssp HHHHHHHHHHTGGGGCSTTSCCEEEEEHHHH-HHHHHHHHHTTEEECCHHHHHHHHHHHBCTTSCB-CGGGTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeHHHH-HHHHHHHHHhhhhhcChhhhhhhcccccCCCCcc-CcccCHHHHHHHH
Confidence 999999999999988 999999999999999 799999987641 1100 00 000 00 0
Q ss_pred ccc----c------------CCCCCcccccccCceEEEEEeCCHHHHH----HHHHccCCCceeEEEecCHHHHHHHHhc
Q 005798 542 KLL----Q------------IPETRLFHHEYNSMVCTVEIVDDVRAAI----DHIHQHGSAHTDCIVAEDQKVAETFLCQ 601 (676)
Q Consensus 542 ~~~----p------------v~~~~~~~eE~FGPVl~i~~~~~~deAi----~~aN~~~~GL~a~vft~d~~~a~~~~~~ 601 (676)
.++ + ++.+..+.||+||||++|++|+|+|||| +++|+++|||++||||+|.+++++|+++
T Consensus 312 ~~~~~a~~~ga~vl~gg~~~v~~~~~~~~E~fgPVl~v~~~~~~~eAi~~ai~~~n~~~~gl~a~i~t~d~~~a~~~~~~ 391 (464)
T 3k9d_A 312 NLAGLTVPADARVLIAEETKVGAKIPYSREKLAPILAFYTAETWQEACELSMDILYHEGAGHTLIIHSEDKEIIREFALK 391 (464)
T ss_dssp HHTTCCCCTTCCEEEEECCCCSTTCGGGSCCCSSEEEEEEESSHHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHH
T ss_pred HHhhhhhcCCCEEEEcCCCCCCCCCcccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHh
Confidence 000 1 2222345699999999999999999997 7999999999999999999999999999
Q ss_pred cCeeeEEEcCCCC---------CCCCCcccCcccccccccccccccccchhcceeEEEEEEcCceee
Q 005798 602 VDSAAVFHNASTR---------FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVV 659 (676)
Q Consensus 602 l~~G~v~iN~~~~---------~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~~~~~ 659 (676)
+++|+|+||+++. ..+.+|||+|.+ |.+ .++|..|+++|++.|+|.++.++..
T Consensus 392 l~~G~v~vN~~~~~~~~g~~~~~~~~~~~G~G~~-G~g----~~~~~~~~~~~~~~k~v~~~~~~~~ 453 (464)
T 3k9d_A 392 KPVSRLLVNTPGALGGIGATTNLVPALTLGCGAV-GGS----SSSDNIGPENLFNIRRIATGVLELE 453 (464)
T ss_dssp SSEEEEEESSCHHHHHTTSSSSSCCCSCBBCTGG-GTC----SCCSBCCGGGSEEEEEEEECCCCHH
T ss_pred CCEeEEEEECCccccccccCCCCCccccccCcCC-CCC----cCCCCCCHHHheEEEEEEecCCchh
Confidence 9999999999875 457889998764 433 2458899999999999999876533
No 52
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=100.00 E-value=9.2e-67 Score=577.58 Aligned_cols=381 Identities=17% Similarity=0.221 Sum_probs=294.8
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChHHHHHHHH
Q 005798 251 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 330 (676)
Q Consensus 251 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 330 (676)
.+++++++++|++||+.|+.+|.++|.++|++++++|++++++|++++.+|++++. .++.. .++....+
T Consensus 6 ~~~v~~av~~A~~A~~~w~~~~~~~R~~il~~~a~~l~~~~~~la~~~~~e~Gk~~----~e~~~-------~~~~~a~~ 74 (452)
T 3my7_A 6 MAELDAMIARVKKAQEEFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGMGI----VEDKV-------IKNHFASE 74 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSC----HHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH----HHHHH-------HHHHHHHH
Confidence 67999999999999999999999999999999999999999999999887765432 22221 13445555
Q ss_pred HH-HHHhcccccccccccccccCCCcEEEEEeeceeEEEEEcCC-Chh-hHHHHHHHHHHhCCEEEEeCCcchHHHHHHH
Q 005798 331 SI-RILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAIL 407 (676)
Q Consensus 331 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l 407 (676)
.+ ++++. .+..|.... +.+...+.+++|+|||++|+|| ||. +.++++++||++||+||+||||.||+|+..+
T Consensus 75 ~~~~~~~~-~~~~g~~~~----~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~k~~~ALaaGN~VVlKps~~tp~~~~~~ 149 (452)
T 3my7_A 75 FIYNKYKD-EQTCGILEE----DDNLGTMTIAEPVGIICGIVPTTNPTSTAIFKSLISLKTRNGIIFSPHPRAKNSTNDA 149 (452)
T ss_dssp HHHHHHTT-CCCSEEC-----------CEEEEEECCEEEEEECTTSTTHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH
T ss_pred HHHHHhhh-ccccccccC----CCCCceEEEecCceEEEEEcCCCChHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHH
Confidence 55 33332 223332211 1233457889999999999999 696 5679999999999999999999999999999
Q ss_pred HHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHHhcCCCEEeecCCcceEEEcCCCCHH
Q 005798 408 HKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLD 485 (676)
Q Consensus 408 ~~l~~~al~~a-lP~gv~~~v~~-~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~a~~~~~lElGGk~p~iV~~dADl~ 485 (676)
++++.+++.++ +|+|+||+|++ +.++++.|..||+||+|+||||+.+++..+ ...||+++|||||+|+||++|||+|
T Consensus 150 ~~~~~~a~~~aG~P~gvv~~v~g~~~~~~~~L~~~p~v~~V~fTGs~~~~~~a~-~~~kp~~~e~gG~~p~iV~~dADl~ 228 (452)
T 3my7_A 150 AKLVLDAAVAAGAPKDIIGWIDQPSVELSNALMKHDDIALILATGGPGMVKAAY-SSGKPAIGVGAGNVPVVIDETADIK 228 (452)
T ss_dssp HHHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTCCEEEECSCHHHHHHHH-TSSSCEEECC--CEEEEECTTSCHH
T ss_pred HHHHHHHHHHcCCCcCcEEEEcCCCHHHHHHHHhCCCccEEEEECcHHHHHHHH-hcCCCEEecCCCCCeEEEeCCCCHH
Confidence 99999988889 99999999996 557788888899999999999999988653 3579999999999999999999999
Q ss_pred HHHHHHHHhcCCCCc-cccccceEEEeCccCChhHHHHHHHH------------HHhc-------CcEEecCccc-----
Q 005798 486 VAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVE------------LQHE-------GVGLFGGPRA----- 540 (676)
Q Consensus 486 ~A~~~iv~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~------------~~~~-------~~~~~g~~~~----- 540 (676)
+|++.+++|+|+|+| +|+|++|+|||+++| |+|+++|+++ ++++ +.+++|+...
T Consensus 229 ~Aa~~iv~s~~~~~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~gpli~~~~~~~v~~~i~~~~~~~a~v~G~~~~~~~~~ 307 (452)
T 3my7_A 229 RAVASVLMSKTFDNGVVCASEQAVIVVDEVY-DEVKERFASHKAHVLSKTDADKVRKVLLIDGALNAKIVGQPATAIAEM 307 (452)
T ss_dssp HHHHHHHHGGGGGGGCCTTCEEEEEEEGGGH-HHHHHHHHTTTEEECCHHHHHHHHHHHEETTEECGGGTTCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCccCCCcEEEEcHHHH-HHHHHHHHHhCCCcCCHHHHHHHHHHHHhhcccCCeEecCccchhHHh
Confidence 999999999999988 999999999999999 7999999763 2111 1223344321
Q ss_pred cc-cc-c-C------------CCCCcccccccCceEEEEEeCCHHHHHHHHHccC----CCceeEEEecCHHHHHH---H
Q 005798 541 SK-LL-Q-I------------PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHG----SAHTDCIVAEDQKVAET---F 598 (676)
Q Consensus 541 ~~-~~-p-v------------~~~~~~~eE~FGPVl~i~~~~~~deAi~~aN~~~----~GL~a~vft~d~~~a~~---~ 598 (676)
.+ ++ | + ++++++ +|+||||++|++|+|+||||+++|++. |||+++|||+|.+++++ +
T Consensus 308 ~G~~v~pt~~vl~~~~~~~v~~~~~~~-~E~FgPVl~v~~~~~~~eAi~~an~~~~~~g~Glta~i~t~d~~~a~~i~~~ 386 (452)
T 3my7_A 308 AGVKVPADTKVLIGEGLGKVSYDDAFA-HEKLSPTLGMFRADNFEDAVAQAVTMVEIGGIGHTSGLYTNQDVNADRIRYF 386 (452)
T ss_dssp HTCCCCTTCCEEEEECSSSCCTTCGGG-SCCSSSEEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEESCTTTCHHHHHHH
T ss_pred CCceeCCCeeEEeeccccCCCCcchhh-cCccCcEEEEEEeCCHHHHHHHHHhcccccCCCCEEEEEcCCHHHHHHHHHH
Confidence 12 22 2 2 234555 589999999999999999999999985 99999999999888777 9
Q ss_pred HhccCeeeEEEcCCCCCC-----------CCCcccCcccccccccccccccccchhcceeEEEEEEcC
Q 005798 599 LCQVDSAAVFHNASTRFC-----------DGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGN 655 (676)
Q Consensus 599 ~~~l~~G~v~iN~~~~~~-----------~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~ 655 (676)
++++++|+|+||+++.+. +.+.+|+|.+.|.+. .+..+.++|.++|+|..+.
T Consensus 387 a~~l~~G~V~VN~~~~~Gg~G~~~~f~~~~~~t~g~g~~Gg~~~-----~~nv~~~~l~n~~~v~~~~ 449 (452)
T 3my7_A 387 GDKMKTARILINIPTTHGGIGDLYNFNVAPSLTLGCGSWGGNSI-----SENVGPKHLINKKTVAKRA 449 (452)
T ss_dssp HHHCCCSEEEESCCCC---------------------------------CCCCCGGGGEEEEEEECCC
T ss_pred HHhCCEEEEEECCCCCCcccccccccCcCceEeeeccccCCCcc-----CCCCChhHeeeeeEEEeec
Confidence 999999999999987541 234456666655543 3667899999999998754
No 53
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=100.00 E-value=1.4e-37 Score=332.65 Aligned_cols=225 Identities=39% Similarity=0.569 Sum_probs=170.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhHHhcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhhCCCccce
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQ 81 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g~~~~q 81 (676)
++++|+.|++.|++||||||||++.|+..++++.++ ..++. +++++++||..++.+|...|..+|++..|
T Consensus 31 la~~Ia~l~~~G~~vVlV~gGgi~~g~~~lg~~~~~----~~l~~------~qa~aavGq~~l~~~~~~~l~~~G~~~~q 100 (367)
T 2j5v_A 31 LVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELP----ATIAS------KQLLAAVGQSRLIQLWEQLFSIYGIHVGQ 100 (367)
T ss_dssp HHHHHHHHHHTTCEEEEEECCHHHHHHHHHTSCCCC----SSHHH------HHHHHHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHhCCCcEEEEEcCHHHHHHHHcCCCCCC----CCHHH------HHHHHHHHHHHHHHHHHHHHHHcCCceEE
Confidence 789999999999999999999999999888887643 24443 45778999999999999999999999999
Q ss_pred EEecccccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeeccccCc
Q 005798 82 LLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLSDVEG 161 (676)
Q Consensus 82 ~l~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lTdVdG 161 (676)
++++.+||.++.++.|..++|..||++|+|||+++||.++++ +..++|||++|+++|.+|+||+|+|+|||||
T Consensus 101 vllt~~d~~~~~r~~n~~~~i~~LL~~g~IPIv~end~v~~~-------el~~gd~D~lAa~vA~~l~Ad~LiilTDVdG 173 (367)
T 2j5v_A 101 MLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATA-------EIKVGDNDNLSALAAILAGADKLLLLTDQKG 173 (367)
T ss_dssp EEECGGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECTTSCCG-------GGCCCSHHHHHHHHHHHHTCSEEEEEECC--
T ss_pred EEEecccccCceEEEhHHHHHHHHHHCCCEEEECCCCceecc-------cccCCCHHHHHHHHHHhcCCCEEEEeecCCc
Confidence 999999999999999977999999999999999999998873 3557999999999999999999999999999
Q ss_pred cccCCCC-CCCCceeceeeh--hchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHhCCcee
Q 005798 162 LYSGPPS-EPNSKLIHTYIR--AKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVG 238 (676)
Q Consensus 162 Vy~~dP~-~~~a~~i~~i~~--~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~i~~~~tg~~iG 238 (676)
||++||+ +|++++|+++++ +|+.++. .++++.+++|||.+|+++|..|.++|++++|+|++.|+.|.++++|+..|
T Consensus 174 vy~~dP~~~p~a~~I~~i~~~~~e~~~l~-~~~~s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~G 252 (367)
T 2j5v_A 174 LYTADPRSNPQAELIKDVYGIDDALRAIA-GDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVG 252 (367)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCCS
T ss_pred eECCCCCCCCCCeEeeeeCCCHHHHHHHh-hccCCCcCcCccHHHHHHHHHHHHcCCCEEEEcCCCchHHHHHhcCCCCc
Confidence 9999995 899999999999 7777543 33345689999999999999999999999999999999999999999999
Q ss_pred eEEecC
Q 005798 239 TLFHRD 244 (676)
Q Consensus 239 T~i~~~ 244 (676)
|++.+.
T Consensus 253 T~i~~~ 258 (367)
T 2j5v_A 253 TLFHAQ 258 (367)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 999876
No 54
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=100.00 E-value=2.3e-35 Score=301.76 Aligned_cols=220 Identities=29% Similarity=0.477 Sum_probs=188.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhHHhcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhhCCCccce
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQ 81 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g~~~~q 81 (676)
++++|+.|++. +++|||||||++.+...++++. . +.+ +.++++++||..++..|.+.|.++|++..|
T Consensus 27 ~~~~i~~l~~~-~~vVlVhgGg~~~~~~~~g~~~-~-------~~~----~~~~l~~~~q~~l~~~~~~~l~~~G~~~~~ 93 (251)
T 2ako_A 27 LVAFLAKLMEK-YEVILVTSAAISAGHTKLDIDR-K-------NLI----NKQVLAAIGQPFLISVYNELLAKFNKLGGQ 93 (251)
T ss_dssp HHHHHHHHHHH-SEEEEEECCHHHHHHHHCCCCS-S-------SHH----HHHHHHHHHHHHHHHHHHHHHGGGTCCEEE
T ss_pred HHHHHHHHHhC-CCEEEEECCHHHHHHHHhCCcc-C-------Cch----HHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 68999999988 9999999999988888888764 1 111 146899999999999999999999999999
Q ss_pred EEecccccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeeccccCc
Q 005798 82 LLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLSDVEG 161 (676)
Q Consensus 82 ~l~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lTdVdG 161 (676)
+.+++.||.++.+++|..+.|+.||+.|+|||+++||.++.. +..++|+|++|+++|.+|+||+|+|+|||||
T Consensus 94 i~~~~~~~~~~~~~~~~~~~i~~ll~~g~ipVi~~~d~v~~~-------~~~~~~~D~~Aa~lA~~l~Ad~liilTdVdG 166 (251)
T 2ako_A 94 ILLTGKDFDSRKATKHAKNAIDMMINLGILPIINENDATAIE-------EIVFGDNDSLSAYATHFFDADLLVILSDIDG 166 (251)
T ss_dssp EEECTGGGGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCCH-------HHHBTTTHHHHHHHHHHTTCSEEEEEESSCS
T ss_pred EEeccchhcCcceEehHHHHHHHHHHCCCEEEEeCCCceeec-------ceeecCchHHHHHHHHhcCCCEEEEEeCCCc
Confidence 999999998888888856999999999999999988877652 2346999999999999999999999999999
Q ss_pred cccCCCC-CCCCceeceeehh--chHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcchHHH--HHhCCc
Q 005798 162 LYSGPPS-EPNSKLIHTYIRA--KHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIK--VLEGKR 236 (676)
Q Consensus 162 Vy~~dP~-~~~a~~i~~i~~~--e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~i~~--~~tg~~ 236 (676)
||++||+ +|++++|++|+++ |+.+++. ++++.+++|||.+|+++|..|+++|++++|+||+.|+.+.+ +++|+.
T Consensus 167 Vy~~dP~~~~~a~~i~~i~~~~~e~~~~~~-~~~~~~~~ggm~~k~~aa~~a~~~gv~v~I~~g~~~~~l~~~~~~~g~~ 245 (251)
T 2ako_A 167 FYDKNPSEFSDAKRLEKITHIKEEWLQATI-KTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQI 245 (251)
T ss_dssp CBSSCTTTCTTCCBCCEESCCCGGGC----------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHSCCCC
T ss_pred eeeCCCCCCCCCeEeeEeccchHHHHHHhc-ccCCCCccCchHHHHHHHHHHHHCCCeEEEEeCCChhhhhhhHHhcCCC
Confidence 9999995 7999999999998 8775443 22345899999999999999999999999999999999988 999988
Q ss_pred eeeEEe
Q 005798 237 VGTLFH 242 (676)
Q Consensus 237 iGT~i~ 242 (676)
.||++.
T Consensus 246 ~GT~i~ 251 (251)
T 2ako_A 246 GGTLFE 251 (251)
T ss_dssp SSEEEC
T ss_pred CceEeC
Confidence 999873
No 55
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=99.97 E-value=1e-30 Score=273.65 Aligned_cols=222 Identities=24% Similarity=0.348 Sum_probs=174.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH--HhcccccccccccccccCccc-cchhhHHHhccHHHHHHHHHHHhhhCCCc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR--QRLRYRKLVNSSLADLQKPQN-ELDGKACAAVGQSSLMALYDTLFSQLDVT 78 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~--~~l~~~~~~~~~~~~l~~~~~-~l~~~~~~avG~~~~~~~~~~~l~~~g~~ 78 (676)
++++|+.|++.|+++|||||||++++. +.++++.+. ...+|.++. .+....+.++|+.. ..+...|.++|++
T Consensus 57 ~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~~~---~~g~R~t~~~~l~~~~~~~~G~~n--~~l~~~l~~~g~~ 131 (298)
T 2rd5_A 57 VVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEF---RDGLRVTDATTMEIVSMVLVGKVN--KNLVSLINAAGAT 131 (298)
T ss_dssp HHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCE---ETTEECBCHHHHHHHHHHHHHTHH--HHHHHHHHHTTSC
T ss_pred HHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCccc---cCCcccCCHHHHHHHHHHHhchHH--HHHHHHHHhCCCC
Confidence 688999999999999999999999876 455554421 123555542 23333344466653 3567788888875
Q ss_pred c-------ceEEeccc-----ccC--chhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCcee-cchhHHHHH
Q 005798 79 S-------SQLLVTDS-----DFR--DEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGL 143 (676)
Q Consensus 79 ~-------~q~l~~~~-----d~~--~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~-~~~D~~A~~ 143 (676)
. .+++.+.. ||. +..+++| .+.|+.+|++|+|||+++ ++.++ .|..+ +|+|++|++
T Consensus 132 a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~-~~~i~~lL~~g~IpVi~~---v~~~~-----~G~~~~i~~D~~Aa~ 202 (298)
T 2rd5_A 132 AVGLSGHDGRLLTARPVPNSAQLGFVGEVARVD-PSVLRPLVDYGYIPVIAS---VAADD-----SGQAYNINADTVAGE 202 (298)
T ss_dssp EEEEETTGGGCEEEEECTTHHHHBSEEEEEEEC-GGGHHHHHHTTCEEEEES---EEECT-----TSCEEEECHHHHHHH
T ss_pred ccccChHHCCEEEEEeCCccccCCcceEEEEEC-HHHHHHHHhCCCEEEEcC---eeECC-----CCCEEEECHHHHHHH
Confidence 2 24455432 333 3455567 789999999999999996 44432 44556 699999999
Q ss_pred HHHHcCCCeEeeccccCccccCCCCCCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCc-EEEEeC
Q 005798 144 LALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIP-VVITSG 222 (676)
Q Consensus 144 lA~~l~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~-v~I~~g 222 (676)
+|.+|+||+|+|+|||||||++||+ | +++|++|+++|+.+++..+ .++|||.+|+++|..|+++|++ ++|+||
T Consensus 203 lA~~l~Ad~LiilTdVdGVy~~dp~-~-a~~i~~is~~e~~~~~~~g----~~~gGM~~Kl~aa~~a~~~gv~~v~I~~g 276 (298)
T 2rd5_A 203 LAAALGAEKLILLTDVAGILENKED-P-SSLIKEIDIKGVKKMIEDG----KVAGGMIPKVKCCIRSLAQGVKTASIIDG 276 (298)
T ss_dssp HHHHHTCSEEEEEESSSSEESSSSC-T-TSEECEEEHHHHHHHHHTT----SSCTTHHHHHHHHHHHHHTTCSEEEEEET
T ss_pred HHHHcCCCEEEEEeCCcCeecCCCC-C-CCCcccCCHHHHHHHHHCC----CCCCchHHHHHHHHHHHHcCCCeEEEecC
Confidence 9999999999999999999999996 4 8999999999998766543 6799999999999999999998 999999
Q ss_pred CCcchH-HHHHhCCceeeEEec
Q 005798 223 FAMDSI-IKVLEGKRVGTLFHR 243 (676)
Q Consensus 223 ~~~~~i-~~~~tg~~iGT~i~~ 243 (676)
+.|+.| .++++++..||++.+
T Consensus 277 ~~~~~ll~~l~~~~~~GT~i~~ 298 (298)
T 2rd5_A 277 RRQHSLLHEIMSDEGAGTMITG 298 (298)
T ss_dssp TSTTHHHHHHHSSSCSEEEEEC
T ss_pred CCCchHHHHHhcCCCCceEEeC
Confidence 999999 899999989999863
No 56
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=99.97 E-value=3.5e-30 Score=271.53 Aligned_cols=223 Identities=19% Similarity=0.314 Sum_probs=174.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH--HhcccccccccccccccCccc-cchhhHHHhccHHHHHHHHHHHhhhCCCc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR--QRLRYRKLVNSSLADLQKPQN-ELDGKACAAVGQSSLMALYDTLFSQLDVT 78 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~--~~l~~~~~~~~~~~~l~~~~~-~l~~~~~~avG~~~~~~~~~~~l~~~g~~ 78 (676)
++++|+.|++.|+++|||||||++++. ..++++++.. .++|.|+. .+....+.++|+... .+...|..+|+.
T Consensus 70 l~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~~~---~g~Rvt~~~~l~~~~~~~~G~in~--~l~~~L~~~g~~ 144 (321)
T 2v5h_A 70 VMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFH---NGLRVTDADTMEVVEMVLVGRVNK--DIVSRINTTGGR 144 (321)
T ss_dssp HHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCBS---SSSBCBCHHHHHHHHHHHHHTHHH--HHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCcccc---CCcccCCHHHHHHHHHHHhChHHH--HHHHHHHhCCCC
Confidence 688999999999999999999999875 4556654321 23555542 344444445677642 355677777754
Q ss_pred c-------ceEEeccc----ccC--chhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCcee-cchhHHHHHH
Q 005798 79 S-------SQLLVTDS----DFR--DEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGLL 144 (676)
Q Consensus 79 ~-------~q~l~~~~----d~~--~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~-~~~D~~A~~l 144 (676)
. .+++.+.. ||. +..+.+| .+.|+.+|+.|+|||+++ ++.++ .|..+ +|+|++|+++
T Consensus 145 a~gl~~~~a~~l~a~~~~~~d~g~~g~v~~v~-~~~i~~lL~~g~IpVi~~---v~~~~-----~G~~~~i~~D~~Aa~l 215 (321)
T 2v5h_A 145 AVGFCGTDGRLVLARPHDQEGIGFVGEVNSVN-SEVIEPLLERGYIPVISS---VAADE-----NGQSFNINADTVAGEI 215 (321)
T ss_dssp EEEECTTGGGSEEEEECSSCSSBSBEEEEEEC-GGGTHHHHHTTCEEEEES---EEECT-----TSCEEECCHHHHHHHH
T ss_pred eeeeChhhccEEEeecCCCccccccceeEEec-HHHHHHHHHCCCeEEEeC---ceECC-----CCCEEEeCHHHHHHHH
Confidence 2 25555542 543 3344566 788999999999999996 55543 44566 5999999999
Q ss_pred HHHcCCCeEeeccccCccccCCCCCCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCc-EEEEeCC
Q 005798 145 ALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIP-VVITSGF 223 (676)
Q Consensus 145 A~~l~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~-v~I~~g~ 223 (676)
|.+|+||+|+|+|||||||++||+ ++++|++|+++|+.+++..+ .++|||.||+++|..|+++|++ ++|+||+
T Consensus 216 A~~l~Ad~LiilTDVdGVy~~dp~--~a~~i~~is~~e~~~l~~~g----~~~gGM~~Kl~Aa~~a~~~gv~~v~I~~g~ 289 (321)
T 2v5h_A 216 AAALNAEKLILLTDTRGILEDPKR--PESLIPRLNIPQSRELIAQG----IVGGGMIPKVDCCIRSLAQGVRAAHIIDGR 289 (321)
T ss_dssp HHHTTCSEEEEEESSSSCBSSTTC--TTCBCCEEEHHHHHHHHHTT----SSCTTHHHHHHHHHHHHHTTCSEEEEEETT
T ss_pred HHHcCCCEEEEeeCCCceEcCCCC--CCeeeeEEcHHHHHHHHhCC----CCcCcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 999999999999999999999996 48999999999998766543 6799999999999999999998 9999999
Q ss_pred CcchH-HHHHhCCceeeEEecC
Q 005798 224 AMDSI-IKVLEGKRVGTLFHRD 244 (676)
Q Consensus 224 ~~~~i-~~~~tg~~iGT~i~~~ 244 (676)
.++.+ .++++++..||+|..+
T Consensus 290 ~~~~ll~~l~~~~~~GT~I~~~ 311 (321)
T 2v5h_A 290 IPHALLLEIFTDAGIGTMIVGS 311 (321)
T ss_dssp STTHHHHHHHCCCCSEEEEECC
T ss_pred CCchHHHHHhcCCCCceEEECC
Confidence 99998 8899998899999866
No 57
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=99.97 E-value=7e-30 Score=267.48 Aligned_cols=220 Identities=18% Similarity=0.228 Sum_probs=170.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH--HhcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhhCCCcc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR--QRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTS 79 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~--~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g~~~ 79 (676)
++++|+.|++.|+++|||||||++++. +.+++.++. ...+|.++.. .++.+.++++..+...+...|.++|++.
T Consensus 46 ~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~~~---~~g~R~t~~~-~l~~~~~~~~G~l~~~l~~~L~~~g~~a 121 (299)
T 2ap9_A 46 FAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEGDF---KGGFRVTTPE-VLDVARMVLFGQVGRELVNLINAHGPYA 121 (299)
T ss_dssp HHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCCCC---SSSSCCBCHH-HHHHHHHHHHHTHHHHHHHHHTTSSSCE
T ss_pred HHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCcccc---cCCcccCCHH-HHHHHHHHHhhHHHHHHHHHHHhCCCCc
Confidence 689999999999999999999999876 455555431 1235655421 1233334333335556889999999764
Q ss_pred ceEEecccc---------------------cCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCcee-cch
Q 005798 80 SQLLVTDSD---------------------FRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIF-WDN 137 (676)
Q Consensus 80 ~q~l~~~~d---------------------~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~-~~~ 137 (676)
. .++..+ |.+..+.++ .+.|..+|+.|+|||+++ ++.++ .|..+ +|+
T Consensus 122 v--~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~-~~~i~~lL~~g~IpVv~~---v~~~~-----~G~~~~l~~ 190 (299)
T 2ap9_A 122 V--GITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVN-TAAMLDLVAAGRIPVVST---LAPDA-----DGVVHNINA 190 (299)
T ss_dssp E--EEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEEC-HHHHHHHHHTTCEEEEES---EEECT-----TCCEEEECH
T ss_pred e--EechhHCCEEEEEecccccccccCCCCcceeEEEec-HHHHHHHHhCCCeEEECC---eeECC-----CCCEEEECH
Confidence 2 222211 112222245 789999999999999997 44432 45556 699
Q ss_pred hHHHHHHHHHcCCCeEeeccccCccccCCCCCCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCc-
Q 005798 138 DSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIP- 216 (676)
Q Consensus 138 D~~A~~lA~~l~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~- 216 (676)
|++|+++|.+|+||+|+|+|||||||++||+ ++++|++|+++|+.+++. +++|||.||+++|..|+++|++
T Consensus 191 D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~--~~~~i~~is~~e~~~l~~------~~~ggM~~Kl~aa~~a~~~gv~~ 262 (299)
T 2ap9_A 191 DTAAAAVAEALGAEKLLMLTDIDGLYTRWPD--RDSLVSEIDTGTLAQLLP------TLELGMVPKVEACLRAVIGGVPS 262 (299)
T ss_dssp HHHHHHHHHHTTCSEEEEEESSSSEETTTTC--TTCEESEEEHHHHHHHGG------GSCTTTHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHcCCCEEEEEeCChhhhcCCCC--CCcChhhcCHHHHHHHHH------hhcCchHHHHHHHHHHHHcCCCE
Confidence 9999999999999999999999999999986 468999999999987543 6799999999999999999999
Q ss_pred EEEEeCCCcchH-HHHHhCCceeeEEecC
Q 005798 217 VVITSGFAMDSI-IKVLEGKRVGTLFHRD 244 (676)
Q Consensus 217 v~I~~g~~~~~i-~~~~tg~~iGT~i~~~ 244 (676)
++|+||+.|+++ .++++++..||++.++
T Consensus 263 v~I~~g~~p~~ll~~l~~~~~~GT~i~~~ 291 (299)
T 2ap9_A 263 AHIIDGRVTHCVLVELFTDAGTGTKVVRG 291 (299)
T ss_dssp EEEEETTSTTHHHHHHHSCCCCSEEEECC
T ss_pred EEEecCCCCcHHHHHHhcCCCCcEEEecC
Confidence 999999999997 8999999999999876
No 58
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=99.97 E-value=4.4e-30 Score=264.96 Aligned_cols=221 Identities=20% Similarity=0.235 Sum_probs=163.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH--Hhcccccccccccccc--cCccccchhhHHHhccHHHHHHHHHHHhhhCCC
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR--QRLRYRKLVNSSLADL--QKPQNELDGKACAAVGQSSLMALYDTLFSQLDV 77 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~--~~l~~~~~~~~~~~~l--~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g~ 77 (676)
++++|+.|++.|+++|||||||++++. ..+++...+......+ |.++.. .++++.++++..++..+...|.++|+
T Consensus 17 ~~~~i~~l~~~G~~vViVhGgg~~~~~~~~~~~~~~~~~~~~~g~~~rvt~~~-~l~~~~~~~~G~i~~~l~~~l~~~G~ 95 (269)
T 2egx_A 17 VAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRK-TLEIFEMVYCGLVNKRLVELLQKEGA 95 (269)
T ss_dssp HHHHHHHHHHHTCCEEEECCCHHHHHHHHHHTTCCCCC-------CCCCCCHH-HHHHHHHHHHTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCeEEEEECChHHHHHHHHHcCCccccccccCCccCcCCCHH-HHHHHHHHHHhHHHHHHHHHHHHCCC
Confidence 689999999999999999999998875 4556553211011234 555421 24566666665567788899999998
Q ss_pred ccceE-------Eecc-----------------cccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCc-
Q 005798 78 TSSQL-------LVTD-----------------SDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSG- 132 (676)
Q Consensus 78 ~~~q~-------l~~~-----------------~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~- 132 (676)
+...+ +.++ .+|.+..+++| .+.|+.+|++|.|||+++ ++.++ +|.
T Consensus 96 ~a~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~D~g~~g~i~~v~-~~~i~~ll~~g~ipVi~~---v~~~~-----~g~~ 166 (269)
T 2egx_A 96 NAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVN-KALLDLLLQAGYLPVLTP---PALSY-----ENEA 166 (269)
T ss_dssp CEEEEETTGGGCEEECBC----------------CCEECCCEEC-HHHHHHHHHTTCEEEEEC---CEEET-----TSCE
T ss_pred CeEEeCCCCccceeeeecccccccccccccCCcCCCCCCceEEC-HHHHHHHHHCCCEEEEcC---cEECC-----CCCE
Confidence 75421 1110 01223334567 889999999999999996 33322 333
Q ss_pred eecchhHHHHHHHHHcCCCeEeeccccCccccCCCCCCCCceeceeehhchH--HHHhcCCCCcccccchHHHHHHHHHH
Q 005798 133 IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQ--AEITFGDKSRVGRGGMTAKVNAAYCA 210 (676)
Q Consensus 133 ~~~~~D~~A~~lA~~l~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~~e~~--~~~~~g~~~~~~~ggM~~K~~aa~~a 210 (676)
.++|+|++|+++|.+|+||+|+|+|||||||+ || .|++++|++++++|+. ++ . .+++|||.+|+++|..|
T Consensus 167 ~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~-dp-~~~a~~i~~i~~~e~~~~~l-~-----~~~~ggm~~Kl~aa~~a 238 (269)
T 2egx_A 167 INTDGDQIAALLATLYGAEALVYLSNVPGLLA-RY-PDEASLVREIPVERIEDPEY-L-----ALAQGRMKRKVMGAVEA 238 (269)
T ss_dssp EEECHHHHHHHHHHHHTCSEEEEEESSSSCBC--------CBCCEECHHHHHCHHH-H-----TTSCHHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHcCCCEEEEEeCchhhhc-CC-CCCccccccCCHHHhhHHHh-c-----CCCCCchHHHHHHHHHH
Confidence 34999999999999999999999999999999 88 6789999999999987 65 2 37899999999999999
Q ss_pred HHcCC-cEEEEeCCCcchHHHHHhCCceeeEEe
Q 005798 211 ACAGI-PVVITSGFAMDSIIKVLEGKRVGTLFH 242 (676)
Q Consensus 211 ~~~gv-~v~I~~g~~~~~i~~~~tg~~iGT~i~ 242 (676)
+++|+ +++|+|++.|+.+.+.+.| .||++.
T Consensus 239 ~~~gv~~v~I~~g~~~~~l~~~l~g--~GT~i~ 269 (269)
T 2egx_A 239 VKGGVKRVVFADGRVENPIRRALSG--EGTVVR 269 (269)
T ss_dssp HHTTCSCEEEEESSSSSHHHHHHTT--CSEEEC
T ss_pred HHcCCCeEEEEeCCCchHHHHHhCC--CCeEEC
Confidence 99999 7999999999999888877 799873
No 59
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.97 E-value=3.4e-30 Score=265.34 Aligned_cols=220 Identities=17% Similarity=0.203 Sum_probs=153.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH--Hhcccccccccc------cccccCccccchhhHHHhccHHHHHHHHHHHhh
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR--QRLRYRKLVNSS------LADLQKPQNELDGKACAAVGQSSLMALYDTLFS 73 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~--~~l~~~~~~~~~------~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~ 73 (676)
|+++|+.++ +.++|||||||+++.. +.+++++..... ...++.|+ .+++ .+...+...|.
T Consensus 32 l~~~i~~l~--~~~~vlVhGGG~~~~~~~~~~gi~~~~~~~~g~~~~~~G~rvT~--------~~~~--~ln~~l~~~L~ 99 (269)
T 3ll9_A 32 IASEIGNAS--PSSLMIVHGAGSFGHPFAGEYRIGSEIENEEDLRRRRFGFALTQ--------NWVK--KLNSHVCDALL 99 (269)
T ss_dssp HHHHHHHHC--CSSEEEEECCGGGTHHHHHHHTTTSCCCSHHHHHHHHHHHHHHH--------HHHH--HHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCEEEEECCcHHHHHHHHHcCCCcccccCcccccccchhhHHH--------HHHH--HHHHHHHHHHH
Confidence 677777765 5899999999998764 456665532100 02344443 0111 23445678899
Q ss_pred hCCCccceEEeccccc--CchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCC--Cc-eecchhHHHHHHHHHc
Q 005798 74 QLDVTSSQLLVTDSDF--RDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDS--SG-IFWDNDSLAGLLALEL 148 (676)
Q Consensus 74 ~~g~~~~q~l~~~~d~--~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~--~~-~~~~~D~~A~~lA~~l 148 (676)
++|++..++.-.+..+ .++.+++| .+.|..+|++|+|||+++ |.+... + +. .++|+|++|+++|.+|
T Consensus 100 ~~G~~a~~l~g~~~~~~~~g~v~~v~-~~~i~~lL~~g~ipVi~~-~~~~~~------~~~g~~~~~~~D~~Aa~lA~~l 171 (269)
T 3ll9_A 100 AEGIPAVSMQPSAFIRAHAGRISHAD-ISLIRSYLEEGMVPVVYG-DVVLDS------DRRLKFSVISGDQLINHFSLRL 171 (269)
T ss_dssp HTTCCEEECCGGGTEEEETTEEEEEC-CHHHHHHHHTTCEEEEEC-EEEEBS------CTTTSEEEECHHHHHHHHHHHH
T ss_pred HCCCcEEEEcchHcCeEecCeeeeec-HHHHHHHHHCCCEEEECC-CEEecc------cccCcceecchHHHHHHHHHHc
Confidence 9998765432111111 23445556 788999999999999996 444432 3 33 3499999999999999
Q ss_pred CCCeEeeccccCccccCCCC-CCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcch
Q 005798 149 KADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDS 227 (676)
Q Consensus 149 ~Ad~li~lTdVdGVy~~dP~-~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~ 227 (676)
+||+|+|+|||||||++||+ +|++++|++++++|+.+++. ++.+.+++|||.+|+++|..|+++|++++|+||+.|+.
T Consensus 172 ~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~-~~~~~~~tgGM~~Kl~aa~~a~~~Gv~v~I~~g~~~~~ 250 (269)
T 3ll9_A 172 MPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLD-GTLNTDVTGGMVGKIRELLLLAEKGVESEIINAAVPGN 250 (269)
T ss_dssp CCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC--------------------SHHHHHHHHHHHTTCCEEEEESSSTTH
T ss_pred CCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhc-ccCCCcCcCCcHHHHHHHHHHHhCCCeEEEEeCCCchH
Confidence 99999999999999999995 89999999999999875543 33345889999999999999999999999999999999
Q ss_pred HHHHHhCCce-eeEEe
Q 005798 228 IIKVLEGKRV-GTLFH 242 (676)
Q Consensus 228 i~~~~tg~~i-GT~i~ 242 (676)
+.++++|+.+ ||++.
T Consensus 251 l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 251 IERALLGEEVRGTRIT 266 (269)
T ss_dssp HHHHHHTCCCSSEEC-
T ss_pred HHHHHCCCCCCcEEEE
Confidence 9999999998 99986
No 60
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=99.96 E-value=2.1e-29 Score=265.40 Aligned_cols=220 Identities=19% Similarity=0.179 Sum_probs=170.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH--HhcccccccccccccccCccccchhhHHHhccHHH--HHHHHHHHhhhCCC
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR--QRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSS--LMALYDTLFSQLDV 77 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~--~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~--~~~~~~~~l~~~g~ 77 (676)
++++|+.|++.|+++|||||||++++. ..+++.++.+ +.. .++...+.++|+.+ ++..|.+.|.++|+
T Consensus 35 ~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~~~~~~t-~~~-------~l~~~~~~~~G~i~~~l~~~l~~~l~~~g~ 106 (316)
T 2e9y_A 35 ASSIIADVLADGWRSVITHGNGPQVGYLSEAFEALPPER-PRQ-------PLYIATAMTQAWIGLLLKHSLEEELRRRGL 106 (316)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHTSCTTS-CCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcCCCCCCC-CHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Confidence 689999999999999999999999995 4555554321 111 23333445567763 56789999999998
Q ss_pred c------cceEEecccc------------cCc-----------------h--------------hHhhhHHHHHHHHHhC
Q 005798 78 T------SSQLLVTDSD------------FRD-----------------E--------------DFRKQLYDTVQSLLDL 108 (676)
Q Consensus 78 ~------~~q~l~~~~d------------~~~-----------------~--------------~~~~~~~~~i~~ll~~ 108 (676)
+ .+|+.++..| |.. . .+.++ .+.|+.||++
T Consensus 107 ~a~~~~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~~g~g~r~vv~sp~~i~~v~-~~~i~~lL~~ 185 (316)
T 2e9y_A 107 NVLVPVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFRRVVPSPRPVSIVD-RDLIAEASAE 185 (316)
T ss_dssp CCCCCEECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSSEEEEECCCCEEEETT-HHHHHHHHHH
T ss_pred CccccceeeEEEeccccccccccccccccccchhhhhhhhhhcceeeeccccccceecccCCCcceeeh-HHHHHHHHHC
Confidence 7 5677777655 110 0 11134 7899999999
Q ss_pred CCeeEEcCCCcee--cCCCCCCCCCce-----ecchhHHHHHHHHHcCCCeEeeccccCccccCCCCCCCCceeceeehh
Q 005798 109 RVIPIFNENDAVS--TRKAPYEDSSGI-----FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRA 181 (676)
Q Consensus 109 g~iPVi~~~d~v~--~~~~~~~~~~~~-----~~~~D~~A~~lA~~l~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~~ 181 (676)
|+|||++|||.+. .++ ++.. ++|+|++|+++|.+|+||+|+|+|||||||+ ||++|++++|++++++
T Consensus 186 g~IpI~~g~~g~pv~~~~-----~g~~~g~~~~id~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~~p~a~~i~~i~~~ 259 (316)
T 2e9y_A 186 SPAVVALGGGGVPVVERP-----GGVLEPVEAVVDKDLASSLLATQLNADLLVILTDVPGVAV-NYGREGERWLRRAAAS 259 (316)
T ss_dssp CSEEEECGGGCEEEEECT-----TSCEEECSCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTTSTTCEECSEEEHH
T ss_pred CCEEEEECCCCCCeeECC-----CCCeecceeeeCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCCCCCCcCCcEEcHH
Confidence 9999999877443 222 3312 2699999999999999999999999999999 6778999999999999
Q ss_pred chHHHHhcCCCCcccccchHHHHHHHHHHHHcCC-cEEEEeCCCcchHHHHHhCCceeeEEec
Q 005798 182 KHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGI-PVVITSGFAMDSIIKVLEGKRVGTLFHR 243 (676)
Q Consensus 182 e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv-~v~I~~g~~~~~i~~~~tg~~iGT~i~~ 243 (676)
|+.+++.. +.+.+|||.+|+++|..|+++|+ +++|+| ++.+.+++++ ..||++.+
T Consensus 260 e~~~~~~~---g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~---~~~l~~~l~g-~~GT~i~~ 315 (316)
T 2e9y_A 260 ELKKYLRE---GHFPPGSMGPKVEAAISFVERTGKPAVIGS---LEEARQVLSL-QAGTVVML 315 (316)
T ss_dssp HHHHHHHT---TCSCTTTHHHHHHHHHHHHHHHCSCEEEEE---STTHHHHHTT-SSSEEEEC
T ss_pred HHHHHHhc---CCCCCCCHHHHHHHHHHHHHcCCCeEEECc---HHHHHHHHcC-CCCeEEec
Confidence 98876654 34778999999999999999999 699998 5668888988 78999864
No 61
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=99.96 E-value=2.8e-30 Score=268.22 Aligned_cols=220 Identities=14% Similarity=0.141 Sum_probs=164.6
Q ss_pred HHHHHHHHHHCCC-eEEEEeCChhHHhHHhcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhhCCCccc
Q 005798 2 ICLQLKELNSQGF-EIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSS 80 (676)
Q Consensus 2 ~~~~I~~l~~~G~-~vviVhgGg~~i~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g~~~~ 80 (676)
++++|+.|++.|+ ++|||||||+++.. .+...... ..+. +.+.++|+..++..|...|.++|+++.
T Consensus 52 la~~Ia~l~~~G~~~vViVhGgG~~~~~-~l~~~~~~----~~~~--------~~~~~vt~g~l~~~l~~~l~~~G~~a~ 118 (286)
T 3d40_A 52 FARNFARLAETYRGRMVLISGGGAFGHG-AIRDHDST----HAFS--------LAGLTEATFEVKKRWAEKLRGIGVDAF 118 (286)
T ss_dssp HHHHHHHHHHHTTTSEEEEECCCCC-----------------CCT--------THHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHcCCCeEEEEECCHHHHHH-HHHHcCCC----cccc--------hhcchhhHHHHHHHHHHHHHHcCCcEE
Confidence 6899999999998 69999999997665 22211111 0111 257888998889999999999999887
Q ss_pred eEEecccccC-chhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCC-ceecchhHHHHHHHHH-cCCCeEeecc
Q 005798 81 QLLVTDSDFR-DEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS-GIFWDNDSLAGLLALE-LKADLLVLLS 157 (676)
Q Consensus 81 q~l~~~~d~~-~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~-~~~~~~D~~A~~lA~~-l~Ad~li~lT 157 (676)
++...+.+|. +..+..+ .+.|+.+|++|+|||+++ |.+... ++ ..++|+|++|+++|.+ |+||+|+|+|
T Consensus 119 ~l~~~~~~~t~dg~~~~~-~~~i~~lL~~g~IpVi~g-d~~~~~------~g~~~~~~~D~~Aa~lA~~~l~Ad~LiilT 190 (286)
T 3d40_A 119 PLQLAAMCTLRNGIPQLR-SEVLRDVLDHGALPVLAG-DALFDE------HGKLWAFSSDRVPEVLLPMVEGRLRVVTLT 190 (286)
T ss_dssp ECCGGGTEEEETTEEEEC-CSHHHHHHHTTCEEEEEC-EEEEBT------TSCEEEECGGGHHHHTTTTCCSCEEEEEEE
T ss_pred EEEeecCCcccCCeEEeh-HHHHHHHHHCcCEEEEcC-CeEEcC------CCCEEeeCHHHHHHHHHHhhCCCCEEEEec
Confidence 7766554441 0122233 578999999999999996 655442 22 2459999999999999 9999999999
Q ss_pred ccCccccCCCCCCCCceeceeehhchHHHHh--cCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHhC-
Q 005798 158 DVEGLYSGPPSEPNSKLIHTYIRAKHQAEIT--FGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEG- 234 (676)
Q Consensus 158 dVdGVy~~dP~~~~a~~i~~i~~~e~~~~~~--~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~i~~~~tg- 234 (676)
||||||++||+ ++++|++|++.|+.+++. .++++.+++|||.+|+++|..|+++|++++|+||+.|+.+.+++++
T Consensus 191 DVdGVy~~dP~--~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl~Aa~~a~~~gv~v~I~~g~~p~~l~~l~t~~ 268 (286)
T 3d40_A 191 DVDGIVTDGAG--GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPF 268 (286)
T ss_dssp SSSSCEECC-----CEECCEEETTSCHHHHHHHHHSCC----CHHHHHHHHHHHHHHTTCEEEEEECCTTCCCGGGGSCG
T ss_pred CCCeeEcCCCC--CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHHHHHHHHHHCCCcEEEEeCCCCCcHHHHhcCc
Confidence 99999999997 799999999998765433 1223458899999999999999999999999999999999999998
Q ss_pred ----Cce-eeEEecC
Q 005798 235 ----KRV-GTLFHRD 244 (676)
Q Consensus 235 ----~~i-GT~i~~~ 244 (676)
+.+ ||+|..+
T Consensus 269 ~~~~~~~~~t~i~~~ 283 (286)
T 3d40_A 269 SSWPAHVRSTRITTT 283 (286)
T ss_dssp GGSCTTCCCEEEEC-
T ss_pred ccCcccccceeeeec
Confidence 665 9999765
No 62
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=99.96 E-value=3.3e-29 Score=257.48 Aligned_cols=196 Identities=21% Similarity=0.319 Sum_probs=158.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH--HhcccccccccccccccCccccchhhHHHhccHHHHH----HHHHHHhhhC
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR--QRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLM----ALYDTLFSQL 75 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~--~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~----~~~~~~l~~~ 75 (676)
|+++|+.|++.|+++|||||||++++. +.+++++++. ..+|.|+ ++.+..+ +..++ ..|...|..+
T Consensus 55 l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~lg~~~~~~---~G~Rvtd----~~~l~~v-~~~l~G~ln~~i~~~L~~~ 126 (279)
T 3l86_A 55 FLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQVPVKKI---NGLRVTS----KDDMVLV-SHALLDLVGKNLQEKLRQA 126 (279)
T ss_dssp HHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEE---TTEECBC----HHHHHHH-HHHHHHTTHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcEEEEECCHHHHHHHHHHcCCCCccC---CCcccCc----HHHHHHH-HHHHHHHHHHHHHHHHHhC
Confidence 789999999999999999999998876 5677766432 3467766 4455555 44334 6688899999
Q ss_pred CCccceE------Eeccccc-------CchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCcee-cchhHHH
Q 005798 76 DVTSSQL------LVTDSDF-------RDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLA 141 (676)
Q Consensus 76 g~~~~q~------l~~~~d~-------~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~-~~~D~~A 141 (676)
|++..++ +++..++ .++.+.++ .+.|+.||++|+|||++| ++.++ +|..+ +|+|++|
T Consensus 127 G~~a~~l~g~dg~llta~~~~~~d~g~vG~i~~v~-~~~i~~lL~~g~IPVi~~---v~~~~-----~G~~~~i~~D~~A 197 (279)
T 3l86_A 127 GVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHIN-KRVIEEFLENRQIPILAS---LGYSK-----EGDMLNINADYLA 197 (279)
T ss_dssp TCCEEECSGGGGGTEEEEESCHHHHBSBEEEEEEC-HHHHHHHHHTTCEEEEES---EEECT-----TSCEEECCHHHHH
T ss_pred CCCEEEEecCcCCEEEeeccCccccCcccccchhh-HHHHHHHHhCCcEEEECC---cEECC-----CCCEeecCHHHHH
Confidence 9988777 6666543 23444566 899999999999999998 44432 44556 7999999
Q ss_pred HHHHHHcCCCeEeeccccCccccCCCCCCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCc-EEEE
Q 005798 142 GLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIP-VVIT 220 (676)
Q Consensus 142 ~~lA~~l~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~-v~I~ 220 (676)
+++|.+|+||+|+|+|||||||++ +++|++++++|+.+++.. .+++|||.+|+++|..|+++|++ ++|+
T Consensus 198 a~lA~~L~Ad~LiilTDVdGV~~d------~~~I~~i~~~e~~~l~~~----~~~tGGM~~Kl~aa~~a~~~Gv~~v~I~ 267 (279)
T 3l86_A 198 TAVAVALAADKLILMTNVKGVLEN------GAVLEKITSHQVQEKIDT----AVITAGMIPKIESAAKTVAAGVGQVLIG 267 (279)
T ss_dssp HHHHHHTTCSEEEEECSSSSCEET------TEECCEEEGGGSHHHHHT----TSSCTTHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHcCCCEEEEEeCCCccccC------CEehhhccHHHHHHHHhC----CCCcCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 999999999999999999999953 799999999999877653 27899999999999999999998 9999
Q ss_pred eCCC
Q 005798 221 SGFA 224 (676)
Q Consensus 221 ~g~~ 224 (676)
|++.
T Consensus 268 ~~~~ 271 (279)
T 3l86_A 268 DNLL 271 (279)
T ss_dssp SSSS
T ss_pred ccCC
Confidence 9764
No 63
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=99.96 E-value=7.9e-29 Score=254.90 Aligned_cols=220 Identities=24% Similarity=0.306 Sum_probs=163.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhHHhcccccccccccccccCccccchhhHHHhccHHHH--HHHHHHHhhhCCCc-
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSL--MALYDTLFSQLDVT- 78 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~--~~~~~~~l~~~g~~- 78 (676)
.|++|+.|.+.|++|||+||+|||+|+..++...... . .....+..+.+.+.|..+. ..++++.|..+|+.
T Consensus 36 ~a~~i~~~~~~g~~vvi~hGnGPQVG~i~~~~~~~~~----~--~~~~pld~~~A~sqG~igy~l~~al~~~l~~~g~~~ 109 (317)
T 3kzf_A 36 AASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAG----V--SPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPA 109 (317)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHSTTS----S--SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccc----c--CCCCCccccCchhhHHHHHHHHHHHHHHHHhcCCCC
Confidence 4788999999999999999999999986665442110 0 0111244667777777763 36788899988874
Q ss_pred -----cceEEecccc--cCchhH------------------------------------------hhhHHHHHHHHHhCC
Q 005798 79 -----SSQLLVTDSD--FRDEDF------------------------------------------RKQLYDTVQSLLDLR 109 (676)
Q Consensus 79 -----~~q~l~~~~d--~~~~~~------------------------------------------~~~~~~~i~~ll~~g 109 (676)
.+|+.+..+| |.++.+ .++ .+.|+.||++|
T Consensus 110 ~v~t~itq~~Vd~~Dpaf~~PtKpiG~~y~~~ea~~~~~~~~~~~~~ed~grg~RrvV~sP~P~~iVe-~~~I~~LL~~G 188 (317)
T 3kzf_A 110 NCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEIVE-YGVIKTLIDNN 188 (317)
T ss_dssp CEEEBCCEEEECTTCGGGTSCCEECC--------------------------CCCCEECCCCEEEETT-HHHHHHHHHTT
T ss_pred ceeEEEEEEEECCCCccccCCCCCcCCCCCHHHHHHHHHhccCCeEeecCCCCeeeecCCCCCcceEC-HHHHHHHHHCC
Confidence 2366665444 332211 122 58999999999
Q ss_pred CeeEEc---------CCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeeccccCccccCCCCCCCCceeceeeh
Q 005798 110 VIPIFN---------ENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIR 180 (676)
Q Consensus 110 ~iPVi~---------~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~ 180 (676)
+|||++ +||.+.. ...++|+|++|+++|.+|+||+|+|+|||||||+ ||++|++++|+++++
T Consensus 189 ~IvI~aGGgGiPv~~~~~~~~G--------~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~~p~a~~I~~it~ 259 (317)
T 3kzf_A 189 VLVICTNGGGIPCKRENKVISG--------VDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYKKPDERKLEEIKL 259 (317)
T ss_dssp CEEECCGGGCEEEEECSSCEEE--------CSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSSCSSCEECCEEEH
T ss_pred CEEEEeCCCCCCcccCCCcccc--------eEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCCCCCCeECcCcCH
Confidence 995555 3333321 1125999999999999999999999999999999 787899999999999
Q ss_pred hchHHHHhcCCCCcccccchHHHHHHHHHHHHcCC-cEEEEeCCCcchHHHHHhCCceeeEEecC
Q 005798 181 AKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGI-PVVITSGFAMDSIIKVLEGKRVGTLFHRD 244 (676)
Q Consensus 181 ~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv-~v~I~~g~~~~~i~~~~tg~~iGT~i~~~ 244 (676)
+|+.+++.. +.+.+|||.+|+++|..|++.|+ +++|+|+ +.+.++++|+ .||+|.++
T Consensus 260 ~e~~~li~~---g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~---~~l~~~l~G~-~GT~I~~d 317 (317)
T 3kzf_A 260 SEILALEKD---GHFAAGSMGPKVRAAIEFTQATGKMSIITSL---STAVDALNGK-CGTRIIKD 317 (317)
T ss_dssp HHHHHHHTT---TSCC--CCHHHHHHHHHHHHHHCCCEEECCG---GGHHHHHTTS-SSEEEECC
T ss_pred HHHHHHHhc---CCCCCCCHHHHHHHHHHHHHcCCCeEEEcch---HHHHHHHCCC-CCeEEecC
Confidence 999876653 34778999999999999988655 5999995 4577888888 79998753
No 64
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=99.96 E-value=8.7e-29 Score=259.05 Aligned_cols=220 Identities=20% Similarity=0.294 Sum_probs=171.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH--HhcccccccccccccccCcc-ccchhhHHHhccHHHHHHHHHHHhhhCCCc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR--QRLRYRKLVNSSLADLQKPQ-NELDGKACAAVGQSSLMALYDTLFSQLDVT 78 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~--~~l~~~~~~~~~~~~l~~~~-~~l~~~~~~avG~~~~~~~~~~~l~~~g~~ 78 (676)
++++|+.|++.|+++|||||||++++. ..+++++... .++|.|+ ..+....+.++|+. ...+...|..+|++
T Consensus 47 ~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~~~---~g~rvt~~~~l~~~~~~~~G~~--~~~l~~~l~~~g~~ 121 (300)
T 2buf_A 47 FARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFI---DGMRVTDAATMDVVEMVLGGQV--NKDIVNLINRHGGS 121 (300)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCCCCBS---SSSBCBCHHHHHHHHHHHHHTH--HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCcccc---CCeecCCHHHHHHHHHHHHHHH--HHHHHHHHHhCCCC
Confidence 689999999999999999999999886 4556554221 2355554 23444444456775 44667788888866
Q ss_pred c-------ceEEeccc----------------ccC--chhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCce
Q 005798 79 S-------SQLLVTDS----------------DFR--DEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI 133 (676)
Q Consensus 79 ~-------~q~l~~~~----------------d~~--~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~ 133 (676)
. .+++.+.. ||. +..+++| .+.|+.+|+.|+|||+++ ++.++ .|..
T Consensus 122 a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~-~~~i~~lL~~g~IpVi~~---v~~~~-----~G~~ 192 (300)
T 2buf_A 122 AIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVN-VGLLNMLVKGDFIPVIAP---IGVGS-----NGES 192 (300)
T ss_dssp EEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEEC-HHHHHHHHHTTCEEEEEE---EEECT-----TSCE
T ss_pred EEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEEEC-HHHHHHHHHCCCEEEEcC---ceeCC-----CCCE
Confidence 2 23333220 332 3344677 899999999999999995 54432 4455
Q ss_pred e-cchhHHHHHHHHHcCCCeEeeccccCccccCCCCCCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHH
Q 005798 134 F-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAAC 212 (676)
Q Consensus 134 ~-~~~D~~A~~lA~~l~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~ 212 (676)
+ +|+|++|+++|.+|+||+|+|+|||||||++ ++++|++++++|+.+++..+ .++|||.||+++|..|++
T Consensus 193 ~~i~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~-----~a~~i~~i~~~e~~~~~~~~----~~~ggM~~Kv~aa~~a~~ 263 (300)
T 2buf_A 193 YNINADLVAGKVAEALKAEKLMLLTNIAGLMDK-----QGQVLTGLSTEQVNELIADG----TIYGGMLPKIRCALEAVQ 263 (300)
T ss_dssp EECCHHHHHHHHHHHHTCSEEEEEESSSCCBCT-----TSCBCCEECHHHHHHHHHTT----CSCTTHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHcCCCEEEEEeCCCCeECC-----CCcChhhCCHHHHHHHHHcC----CCCCccHHHHHHHHHHHH
Confidence 6 6999999999999999999999999999987 38999999999998766533 678999999999999999
Q ss_pred cCCc-EEEEeCCCcchH-HHHHhCCceeeEEecC
Q 005798 213 AGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 244 (676)
Q Consensus 213 ~gv~-v~I~~g~~~~~i-~~~~tg~~iGT~i~~~ 244 (676)
+|++ ++|+||+.++.+ .++++++..||++.++
T Consensus 264 ~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 297 (300)
T 2buf_A 264 GGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR 297 (300)
T ss_dssp TTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred hCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeC
Confidence 9999 999999999998 8889988899999865
No 65
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=99.96 E-value=8.7e-29 Score=257.24 Aligned_cols=219 Identities=22% Similarity=0.310 Sum_probs=171.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH--HhcccccccccccccccCccc-cchhhHHHhccHHHHHHHHHHHhhhCCCc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR--QRLRYRKLVNSSLADLQKPQN-ELDGKACAAVGQSSLMALYDTLFSQLDVT 78 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~--~~l~~~~~~~~~~~~l~~~~~-~l~~~~~~avG~~~~~~~~~~~l~~~g~~ 78 (676)
++++|+.|++.|+++|||||||++++. ..++++++. ...+|.|+. .+....+.++|+.. ..+...|..+|++
T Consensus 42 ~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~~~~~~~---~~g~r~t~~~~l~~~~~~~~G~~~--~~l~~~l~~~g~~ 116 (282)
T 2bty_A 42 FIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVF---KNGHRVTDEKTMEIVEMVLVGKIN--KEIVMNLNLHGGR 116 (282)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCCCB---SSSSBCBCHHHHHHHHHHHHHTHH--HHHHHHHHTTTCC
T ss_pred HHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCCccc---cCCcccCCHHHHHHHHHHHhhHHH--HHHHHHHHhCCCC
Confidence 689999999999999999999999876 455555422 123565542 34333334466653 3467888889976
Q ss_pred c-------ceEEeccc-----ccC--chhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCcee-cchhHHHHH
Q 005798 79 S-------SQLLVTDS-----DFR--DEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGL 143 (676)
Q Consensus 79 ~-------~q~l~~~~-----d~~--~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~-~~~D~~A~~ 143 (676)
. .+++.++. ||. +..+++| .+.|..+|++|.|||+++ ++.++ .|..+ +|+|++|++
T Consensus 117 a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~-~~~i~~ll~~g~IpVi~~---v~~~~-----~G~~~~~~~D~~Aa~ 187 (282)
T 2bty_A 117 AVGICGKDSKLIVAEKETKHGDIGYVGKVKKVN-PEILHALIENDYIPVIAP---VGIGE-----DGHSYNINADTAAAE 187 (282)
T ss_dssp EEEEETTGGGSEEEEECCTTCCCBSBEEEEEEC-THHHHHHHHTTCEEEEES---EEECS-----SSCEEECCHHHHHHH
T ss_pred ceecChhhCCEEEEecCCcccCCCcceEEEEec-HHHHHHHHHCCCEEEECC---CccCC-----CCCEEEECHHHHHHH
Confidence 2 24444432 333 3445677 889999999999999997 44432 44456 699999999
Q ss_pred HHHHcCCCeEeeccccCccccCCCCCCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCc-EEEEeC
Q 005798 144 LALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIP-VVITSG 222 (676)
Q Consensus 144 lA~~l~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~-v~I~~g 222 (676)
+|.+|+||+|+|+|||||||++ | ++|++++++|+.+++..+ .++|||.+|+++|..|+++|++ ++|+||
T Consensus 188 lA~~l~Ad~liilTDVdGvy~~----~--~~i~~i~~~e~~~~~~~g----~~~gGM~~K~~aa~~a~~~gv~~v~I~~g 257 (282)
T 2bty_A 188 IAKSLMAEKLILLTDVDGVLKD----G--KLISTLTPDEAEELIRDG----TVTGGMIPKVECAVSAVRGGVGAVHIING 257 (282)
T ss_dssp HHHHHTCSEEEEEESSSSCEET----T--EECCEECHHHHHHHHTTT----CSCTTHHHHHHHHHHHHHTTCSCEEEEET
T ss_pred HHHHcCCCEEEEEeCCCCeecC----c--hhhhhCCHHHHHHHHHcC----CCCCcHHHHHHHHHHHHHhCCCeEEEecC
Confidence 9999999999999999999997 2 899999999988765433 6799999999999999999998 999999
Q ss_pred CCcchH-HHHHhCCceeeEEecC
Q 005798 223 FAMDSI-IKVLEGKRVGTLFHRD 244 (676)
Q Consensus 223 ~~~~~i-~~~~tg~~iGT~i~~~ 244 (676)
+.|+.+ .++++++..||++.++
T Consensus 258 ~~~~~ll~~~~~~~~~GT~i~~~ 280 (282)
T 2bty_A 258 GLEHAILLEIFSRKGIGTMIKEL 280 (282)
T ss_dssp TSTTHHHHHHSSSSCSSEEECCC
T ss_pred CCCchHHHHHhcCCCCceEEEeC
Confidence 999998 8899998899999765
No 66
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=99.96 E-value=1e-28 Score=258.86 Aligned_cols=226 Identities=18% Similarity=0.192 Sum_probs=162.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhHHhcccc--cccccccccccCccccchhhHHHhccHHH----HHHHHHHHhhhC
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGRQRLRYR--KLVNSSLADLQKPQNELDGKACAAVGQSS----LMALYDTLFSQL 75 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~~~l~~~--~~~~~~~~~l~~~~~~l~~~~~~avG~~~----~~~~~~~~l~~~ 75 (676)
++++|+.|++.|++||||||||||+|+...++. .... . ..+.. ....+.+++|.. +...+.+.|..+
T Consensus 50 ~a~~Ia~L~~~G~~vVvVHGgGPQVG~i~~~l~~~~~~~-~--~~~~~----~l~~~~a~tqg~ig~~l~~~l~~~l~~~ 122 (332)
T 4axs_A 50 PAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKAN-E--KTALV----PFAEAGGMSQGYIGYHMLTAISNELKKL 122 (332)
T ss_dssp HHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTTTT-S--CCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHHhcccc-C--CCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999997433322 2111 0 11111 123444444433 445677888888
Q ss_pred CCc------cceEEecccc--cCch----------------------------------------hHhhhHHHHHHHHHh
Q 005798 76 DVT------SSQLLVTDSD--FRDE----------------------------------------DFRKQLYDTVQSLLD 107 (676)
Q Consensus 76 g~~------~~q~l~~~~d--~~~~----------------------------------------~~~~~~~~~i~~ll~ 107 (676)
++. .+|++++.+| |.++ ...++ .+.|..|++
T Consensus 123 gi~~~v~~~vtqv~V~~~D~af~~p~K~iG~~~~~~ea~~l~~~~~~~~~~~~~g~rrvV~sp~p~~ive-~~~I~~L~~ 201 (332)
T 4axs_A 123 NIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSSKEIAEANNPNSVIVEDAGRGFRKVVASPIPVDFIG-IDAIKQNVN 201 (332)
T ss_dssp TCCCCEEECCCEEEECTTCHHHHSCCEECSCCCC--------CTTSCCC--------CEECCCCEEEETT-HHHHHHHHH
T ss_pred CCCcceeeeeeeeeecccchhhhCcCceeccccCHHHHHHHHhcCCEEEEccCCCceEECCCCCCceeec-HHHHHHhhc
Confidence 865 3467777655 2111 11133 689999999
Q ss_pred CCCeeEEcCCCceecCCCCCCCCCc-eecchhHHHHHHHHHcCCCeEeeccccCccccCCCCCCCCceeceeehhchHHH
Q 005798 108 LRVIPIFNENDAVSTRKAPYEDSSG-IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAE 186 (676)
Q Consensus 108 ~g~iPVi~~~d~v~~~~~~~~~~~~-~~~~~D~~A~~lA~~l~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~~e~~~~ 186 (676)
+|+|||..+++.+..........|. .++|+|++|+++|.+|+||+|+|+|||||||+++| +|++++|++++.+|+.++
T Consensus 202 ~g~Ivi~~ggggipv~~~~~~~~G~~~vid~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~-~~~~~~i~~it~~e~~~~ 280 (332)
T 4axs_A 202 NGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFN-KPTQKALKTVDVKALNNF 280 (332)
T ss_dssp TTCEEECCGGGCEEEEESSSCEEECSSCCCHHHHHHHHHHHTTCSEEEEECSCSSCEESTT-STTCEECSSCBHHHHHHH
T ss_pred CCeEEEecccCCCCccccCCcccCceeeechHHHHHHHHHHhCCceEEEEecCCceEcCCC-CcchhhcccCCHHHHHHH
Confidence 9999988765444332111111122 25999999999999999999999999999999877 578899999999999887
Q ss_pred HhcCCCCcccccchHHHHHHHHHHHHcCCc--EEEEeCCCcchHHHHHhCCceeeEEec
Q 005798 187 ITFGDKSRVGRGGMTAKVNAAYCAACAGIP--VVITSGFAMDSIIKVLEGKRVGTLFHR 243 (676)
Q Consensus 187 ~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~--v~I~~g~~~~~i~~~~tg~~iGT~i~~ 243 (676)
+..| .+++|||.||++||+.|++.|+. ++|.+ ++.+.+++.|+ .||+|.+
T Consensus 281 ~~~g---~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~---~~~~~~~l~g~-~GT~IvA 332 (332)
T 4axs_A 281 INQD---QFAKGSMLPKIKAAMGFVNGHPNRSAIIAD---LSKVEDALKGL-SGTKIIA 332 (332)
T ss_dssp HHTT---CSCTTTTHHHHHHHHHHHTTCTTCEEEEEC---STTHHHHTTTS-SSEEEBC
T ss_pred HHCC---CcCcCCcHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHCCC-CCcEEeC
Confidence 7653 47899999999999999998763 66654 56788889887 6999864
No 67
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=99.95 E-value=6.1e-28 Score=242.84 Aligned_cols=195 Identities=17% Similarity=0.181 Sum_probs=147.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH-----HhcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhhCC
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR-----QRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLD 76 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~-----~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g 76 (676)
++++|+.|++.|+++|||||||+.... +.++++.. .++. .+++...++. .++...|..+|
T Consensus 23 ~~~~i~~l~~~g~~vvlV~ggG~~~~~~~~~~~~~g~~~~------~~~~------~~~~~~~~~~---~l~~~~l~~~g 87 (226)
T 2j4j_A 23 LRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEA------YLDL------LGIWASRLNA---YLVMFSLQDLA 87 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHTTCCHH------HHHH------HHHHHHHHHH---HHHHHHHTTSB
T ss_pred HHHHHHHHHhCCCeEEEEECcchHhchhHHHHHHhCCCcc------cHHH------HHHHHHHHHH---HHHHHHHHHhC
Confidence 688999999999999999999875433 22333221 1111 1233333333 33447888888
Q ss_pred CccceEEecccccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeec
Q 005798 77 VTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLL 156 (676)
Q Consensus 77 ~~~~q~l~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~l 156 (676)
+. | +. .+ .+.|..+|+.|.|||++| .. .++|+|++|+++|.+|+||+|+|+
T Consensus 88 ~~--~------~~------~~-~~~i~~ll~~g~ipVi~g----g~----------~~~~~D~~Aa~lA~~l~Ad~liil 138 (226)
T 2j4j_A 88 YM--H------VP------QS-LEEFIQDWSHGKVVVTGG----FQ----------PGQSTAAVAALVAEASSSKTLVVA 138 (226)
T ss_dssp CS--C------CC------SS-HHHHHHHHTTSSBEEECC----CS----------TTSCHHHHHHHHHHHTTCSEEEEE
T ss_pred CC--C------Cc------CC-HHHHHHHHHCCCEEEEcC----CC----------CCCCcHHHHHHHHHhcCCCEEEEe
Confidence 74 2 11 22 456888999999999987 11 269999999999999999999999
Q ss_pred cccCccccCCCC-CCCCceeceeehhchHHHHhcCCCCcccccch--HHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHh
Q 005798 157 SDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGM--TAKVNAAYCAACAGIPVVITSGFAMDSIIKVLE 233 (676)
Q Consensus 157 TdVdGVy~~dP~-~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM--~~K~~aa~~a~~~gv~v~I~~g~~~~~i~~~~t 233 (676)
|||||||++||+ +|++++|++++++|+.+++.. +...+||| .+|++++..|.++|++++|+|+++|+.+.++++
T Consensus 139 TdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~---~~~~~ggm~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~ 215 (226)
T 2j4j_A 139 TNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEG---SQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILK 215 (226)
T ss_dssp ESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC-------------CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHT
T ss_pred eccceeeCCCCCCCCCCeEccccCHHHHHHHhhc---CCCCcCCccccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHc
Confidence 999999999995 899999999999999876543 13678999 999999999999999999999999999999999
Q ss_pred CCceeeEEec
Q 005798 234 GKRVGTLFHR 243 (676)
Q Consensus 234 g~~iGT~i~~ 243 (676)
|+..||++.+
T Consensus 216 g~~~GT~i~~ 225 (226)
T 2j4j_A 216 GEEVSSIIEP 225 (226)
T ss_dssp TCSSCEEEEC
T ss_pred CCCCceEEee
Confidence 9889999864
No 68
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=99.95 E-value=3.6e-28 Score=249.79 Aligned_cols=199 Identities=20% Similarity=0.303 Sum_probs=154.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCChh-HHhHH--hcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhhCCCc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAV-GVGRQ--RLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVT 78 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~-~i~~~--~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g~~ 78 (676)
|+++|++++++|++||||||||. ..++. .+++.. ++.+ .+.+++++++.. +|...|..+|++
T Consensus 77 la~~I~~l~~~G~~vviV~GgG~i~~g~~~~~~gl~~-----------~~~d-~~g~lat~~n~~---~l~~~L~~~Gi~ 141 (281)
T 3nwy_A 77 VARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMER-----------TRSD-YMGMLGTVMNSL---ALQDFLEKEGIV 141 (281)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTC---CCTTTTTCCH-----------HHHH-HHHHHHHHHHHH---HHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCeEEEEECChhHhhhHHHHhcCCCc-----------cchh-HHHHHHHHHHHH---HHHHHHHHcCCC
Confidence 78999999999999999998764 22321 122221 1100 134556665543 777999999998
Q ss_pred c-ceEEecccccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeecc
Q 005798 79 S-SQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLS 157 (676)
Q Consensus 79 ~-~q~l~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lT 157 (676)
+ .|..++..++.. ++.| .+.+ .+|++|+|||+++ . +|..|+|+|++|+++|.+|+||+|+|+|
T Consensus 142 a~~~~~~~~~~~~~--~~~~-~~~l-~lL~~g~IpVv~g-----~-------~g~~~~~~D~~Aa~lA~~l~Ad~LiilT 205 (281)
T 3nwy_A 142 TRVQTAITMGQVAE--PYLP-LRAV-RHLEKGRVVIFGA-----G-------MGLPYFSTDTTAAQRALEIGADVVLMAK 205 (281)
T ss_dssp EEEEESSCCGGGSE--ECCH-HHHH-HHHHTTCEEEEES-----T-------TSSTTCCHHHHHHHHHHHTTCSEEEEEE
T ss_pred EEEEeccccccccc--ccch-HHHH-HHHHcCCeEEEEC-----C-------CCCCCCCHHHHHHHHHHHcCCCEEEEee
Confidence 7 577777766652 4455 5566 7999999999997 2 3346799999999999999999999999
Q ss_pred ccCccccCCC-CCCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHhCCc
Q 005798 158 DVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKR 236 (676)
Q Consensus 158 dVdGVy~~dP-~~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~i~~~~tg~~ 236 (676)
||||||++|| .+|++++|++++++|+.+ .|+|.+|++++..|.++|++++|+|++.|++|.++++|+.
T Consensus 206 DVdGVy~~dP~~~p~A~~i~~is~~e~~~-----------~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~ 274 (281)
T 3nwy_A 206 AVDGVFAEDPRVNPEAELLTAVSHREVLD-----------RGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEK 274 (281)
T ss_dssp SSSSCBCC-----CCCCBCSEECHHHHHT-----------TTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCC
T ss_pred ccCccccCCCCcCCCCeEcccccHHHHHH-----------cCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCC
Confidence 9999999999 499999999999988642 2467889999999999999999999999999999999999
Q ss_pred eeeEEe
Q 005798 237 VGTLFH 242 (676)
Q Consensus 237 iGT~i~ 242 (676)
+||++.
T Consensus 275 ~GT~i~ 280 (281)
T 3nwy_A 275 IGTLVT 280 (281)
T ss_dssp CSEEEC
T ss_pred CceEEe
Confidence 999985
No 69
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=99.95 E-value=1.1e-27 Score=251.94 Aligned_cols=224 Identities=18% Similarity=0.200 Sum_probs=159.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH--HhcccccccccccccccCccccchhhHHHhccHHH--HHHHHHHHhhhCCC
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR--QRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSS--LMALYDTLFSQLDV 77 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~--~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~--~~~~~~~~l~~~g~ 77 (676)
++++|+.|++.|+++|||||||++++. ..++++.+.. .+ ...++...+.+.|+.+ +..++++.|...|+
T Consensus 31 ~a~~I~~l~~~G~~vVlVhGgg~~~~~~l~~~~~~~~~~---~~----~~~l~~~~a~~~G~l~~~i~~al~~~l~~~g~ 103 (310)
T 2we5_A 31 TSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQAADSEK---NP----AMPLDTCVAMTQGSIGYWLSNALNQELNKAGI 103 (310)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTCSSS---SC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCeEEEEECCcHHHhHHHHHcCCCCCCC---CC----HHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999996 4455544321 01 1112222234444432 13445566766665
Q ss_pred cc-------------------------ceEEecccc--------c--Cc--------------hhHhhhHHHHHHHHHhC
Q 005798 78 TS-------------------------SQLLVTDSD--------F--RD--------------EDFRKQLYDTVQSLLDL 108 (676)
Q Consensus 78 ~~-------------------------~q~l~~~~d--------~--~~--------------~~~~~~~~~~i~~ll~~ 108 (676)
+. .++ ++..| + .+ +.+.++ .+.|+.||++
T Consensus 104 ~~~v~~~l~~~~v~~~d~~f~~~~~~vg~~-~t~~da~~l~~~~~~~~~~~~~~~~~vv~sp~~i~~v~-~~~i~~lL~~ 181 (310)
T 2we5_A 104 KKQVATVLTQVVVDPADEAFKNPTKPIGPF-LTEAEAKEAMQAGAIFKEDAGRGWRKVVPSPKPIDIHE-AETINTLIKN 181 (310)
T ss_dssp CCCEEEBCCEEEECTTCHHHHSCCEEEEEE-ECHHHHHHHHTTTCCEEECTTSCEEEEECCCCEEEETT-HHHHHHHHHT
T ss_pred chhhHhhhhhhcccccchhhcccCceeEEe-ccHHHHHHHHhccccccccCCcceeeccCCcccceeeh-HHHHHHHHHC
Confidence 41 111 12111 2 00 111245 8899999999
Q ss_pred CCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeeccccCccccCCCCCCCCceeceeehhchHHHHh
Q 005798 109 RVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEIT 188 (676)
Q Consensus 109 g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~~e~~~~~~ 188 (676)
|+|||++|++.+...+. +...+..++|+|++|+++|.+|+||+|+|+|||||||+ ||.+|++++|++++++|+.+++.
T Consensus 182 g~IpIi~Gg~Gipv~~~-~~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~~~~a~~i~~i~~~e~~~~~~ 259 (310)
T 2we5_A 182 DIITISCGGGGIPVVGQ-ELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCI-NYGKPDEKQLTNVTVAELEEYKQ 259 (310)
T ss_dssp TCEEECCGGGCEEEETT-TTEECCCCCCHHHHHHHHHHHTTCSEEEEECSCSSCEE-STTSTTCEECCEEEHHHHHHHHH
T ss_pred CCEEEEECCCCCCCcCC-CCCCcEeecCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCCCCCCeECCEEcHHHHHHHhh
Confidence 99999996544433110 00122345999999999999999999999999999999 57789999999999999887665
Q ss_pred cCCCCcccccchHHHHHHHHHHHHcCC--cEEEEeCCCcchHHHHHhCCceeeEEe
Q 005798 189 FGDKSRVGRGGMTAKVNAAYCAACAGI--PVVITSGFAMDSIIKVLEGKRVGTLFH 242 (676)
Q Consensus 189 ~g~~~~~~~ggM~~K~~aa~~a~~~gv--~v~I~~g~~~~~i~~~~tg~~iGT~i~ 242 (676)
.+ .+.+|||.+|+++|..|+++|+ +++|+| ++.+.++++|+..||++.
T Consensus 260 ~g---~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~---~~~l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 260 AG---HFAPGSMLPKIEAAIQFVESQPNKQAIITS---LENLGSMSGDEIVGTVVT 309 (310)
T ss_dssp TT---CSCTTTTHHHHHHHHHHHHHSTTCEEEEEC---SGGGGGCBTTBCCSEEEE
T ss_pred CC---CCCCCChHHHHHHHHHHHHcCCCceEEECc---HHHHHHHHcCCCCCeEEe
Confidence 43 3667999999999999999999 799997 566888899988999985
No 70
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=99.95 E-value=3.6e-28 Score=247.51 Aligned_cols=212 Identities=16% Similarity=0.185 Sum_probs=146.6
Q ss_pred HHHHHHHHCCCeEE-EEeCChhHHhH--Hhcccccccc-cccccccCccccchhhHHHhccHHHHHHHHHHHhhhCCCcc
Q 005798 4 LQLKELNSQGFEII-LVSSGAVGVGR--QRLRYRKLVN-SSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTS 79 (676)
Q Consensus 4 ~~I~~l~~~G~~vv-iVhgGg~~i~~--~~l~~~~~~~-~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g~~~ 79 (676)
+.+++....|+++| ||||||+++.. +.+++++... ++...++.++ +. +..+...+-..|..+|++.
T Consensus 30 ~~l~~~i~~G~~vv~lVhGGG~~~~~~~~~~gi~~~~~~~d~~gl~~t~------~~----~~~ln~~~v~~l~~~G~~a 99 (249)
T 3ll5_A 30 RSIVKVLSGIEDLVCVVHGGGSFGHIKAMEFGLPGPKNPRSSIGYSIVH------RD----MENLDLMVIDAMIEMGMRP 99 (249)
T ss_dssp HHHHHHHHTCTTEEEEEECCGGGTHHHHHHHTCSEECCHHHHHHHHHHH------HH----HHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHhcCCceEEEEECccHHHHHHHHHhCCCcCCCccccccHHHHH------HH----HHHHHHHHHHHHHHCCCcE
Confidence 33444333499999 99999987553 3566665421 0012233332 11 1244455657889999986
Q ss_pred ceEEecccccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeecccc
Q 005798 80 SQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLSDV 159 (676)
Q Consensus 80 ~q~l~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lTdV 159 (676)
.++.-.+..+.++. + .+.|+.+|++|+|||+++ |.+...+ .+..++|+|++|+++|.+|+||+|+|+|||
T Consensus 100 ~~l~~~~~~~~g~v---~-~~~i~~ll~~g~ipVi~~-~~~~~~~-----~~~~~~~~D~~Aa~lA~~l~Ad~li~ltdv 169 (249)
T 3ll5_A 100 ISVPISALRYDGRF---D-YTPLIRYIDAGFVPVSYG-DVYIKDE-----HSYGIYSGDDIMADMAELLKPDVAVFLTDV 169 (249)
T ss_dssp EECCGGGSCBSSSB---C-CHHHHHHHHTTCEEEEEC-EEEEEET-----TEEEEECHHHHHHHHHHHHCCSEEEEEESS
T ss_pred EEEcHHHcccccEE---c-HHHHHHHHHCCCEEEECC-CEEEcCC-----CceeeecHHHHHHHHHHhcCCCEEEEEeCC
Confidence 65422222233332 4 788999999999999995 6655421 223359999999999999999999999999
Q ss_pred CccccCCC-CCCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHH-HHcCCcEEEEeCCCcchHHHHHhCCce
Q 005798 160 EGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCA-ACAGIPVVITSGFAMDSIIKVLEGKRV 237 (676)
Q Consensus 160 dGVy~~dP-~~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a-~~~gv~v~I~~g~~~~~i~~~~tg~~i 237 (676)
||||++|| .+|++++|++++ +++.. ...+.+++|||.+|+++|..+ +++|++++|+||+.++++.+ +.|+.+
T Consensus 170 dGv~~~dp~~~~~a~~i~~i~-~~~~~----~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v~I~~g~~~~~l~~-l~g~~~ 243 (249)
T 3ll5_A 170 DGIYSKDPKRNPDAVLLRDID-TNITF----DRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHPERIGD-IGKESF 243 (249)
T ss_dssp SSCBSSCTTTCTTCCBCCEEC-CCC-----------------HHHHHHHHHHHTTCTTCEEEEETTSGGGGGG-TTSTTC
T ss_pred CccCCCCCCCCCCcEEHHHHH-HHHhc----ccCCCeeECCHHHHHHHHHHHHHhcCCEEEEEeCCChhHHHH-hCCCCC
Confidence 99999999 499999999994 33322 222458899999999999999 89999999999999999988 889888
Q ss_pred -eeEE
Q 005798 238 -GTLF 241 (676)
Q Consensus 238 -GT~i 241 (676)
||++
T Consensus 244 ~GT~i 248 (249)
T 3ll5_A 244 IGTVI 248 (249)
T ss_dssp CSEEE
T ss_pred CCEEe
Confidence 9987
No 71
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=99.95 E-value=6.2e-28 Score=247.69 Aligned_cols=215 Identities=20% Similarity=0.227 Sum_probs=164.1
Q ss_pred HHHHHHHHHHCC------CeEEEEeCChhHHhH--Hhccccccccccc----ccccCccccchhhHHHhccHHHHHHHHH
Q 005798 2 ICLQLKELNSQG------FEIILVSSGAVGVGR--QRLRYRKLVNSSL----ADLQKPQNELDGKACAAVGQSSLMALYD 69 (676)
Q Consensus 2 ~~~~I~~l~~~G------~~vviVhgGg~~i~~--~~l~~~~~~~~~~----~~l~~~~~~l~~~~~~avG~~~~~~~~~ 69 (676)
|+++|++|+..| +++|||||||+++.. +.++++++..+++ ..++.|+ ++++ .+...+.
T Consensus 35 la~~i~~l~~~G~~~~~~~~vVlVhGGG~~~~~~~~~lgi~~~~~~~~~~~~~G~r~T~--------~a~~--~ln~~l~ 104 (266)
T 3k4o_A 35 IAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKIFINMEKGFWEIQ--------RAMR--RFNNIII 104 (266)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHGGGEEECSSSEEECCHHHHHHHHH--------HHHH--HHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCEEEEeCchHHHHHHHHHcCCCcccCcccccccCceeHHH--------HHHH--HHHHHHH
Confidence 788999999988 999999999987543 4667665410001 2344443 1222 3556688
Q ss_pred HHhhhCCCccceEEecccccCch--hHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHH
Q 005798 70 TLFSQLDVTSSQLLVTDSDFRDE--DFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALE 147 (676)
Q Consensus 70 ~~l~~~g~~~~q~l~~~~d~~~~--~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~ 147 (676)
..|..+|++..++.- .|+... .+++| .+.|..+|++|+|||+++ |.+...+ .+..++|+|++|+++|.+
T Consensus 105 ~~l~~~G~~a~~l~~--~d~~~~~~g~~v~-~~~i~~lL~~g~ipVi~~-~~~~~~~-----g~~~~~~~D~~Aa~lA~~ 175 (266)
T 3k4o_A 105 DTLQSYDIPAVSIQP--SSFVVFGDKLIFD-TSAIKEMLKRNLVPVIHG-DIVIDDK-----NGYRIISGDDIVPYLANE 175 (266)
T ss_dssp HHHHTTTCCEEEECG--GGTCEESSSCBCC-CHHHHHHHHTTCEEEEEC-EEEEESS-----SCEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCcEEEeeH--HHcCcccCceEec-HHHHHHHHHCCCEEEEeC-CEEEcCC-----CCeeeeCHHHHHHHHHHH
Confidence 899999998776532 222111 14566 789999999999999995 6554421 334469999999999999
Q ss_pred cCCCeEeeccccCccccCCCCCCCCceeceeehhchHHHHh--cCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCc
Q 005798 148 LKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEIT--FGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAM 225 (676)
Q Consensus 148 l~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~~e~~~~~~--~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~ 225 (676)
|+||+|+|+||||||| +|| ++|++++..|+.+++. .++.+.+++|||.+|+++|..|++ +++|+||+.+
T Consensus 176 l~Ad~li~ltdvdGv~-~d~-----~~i~~~~~~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~a~~---~v~I~~g~~~ 246 (266)
T 3k4o_A 176 LKADLILYATDVDGVL-IDN-----KPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKC---RGFVFNGNKA 246 (266)
T ss_dssp HTCSEEEEEESSSSSB-SSS-----SBCSEECTTTHHHHHHHHHSTTCSCCSSHHHHHHHHHHHTTC---EEEEEETTST
T ss_pred cCCCEEEEEecCCeEE-eCC-----eecCcCCHHHHHHHHHHhccccCCcccCCHHHHHHHHHHHhc---CEEEEeCCCc
Confidence 9999999999999999 654 6899999877765443 344566899999999999999987 9999999999
Q ss_pred chHHHHHhCCceeeEEecC
Q 005798 226 DSIIKVLEGKRVGTLFHRD 244 (676)
Q Consensus 226 ~~i~~~~tg~~iGT~i~~~ 244 (676)
+.|.++++|+.+||++.+.
T Consensus 247 ~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 247 NNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp THHHHHHTTCCCSEEEECC
T ss_pred cHHHHHhCCCCCceEEEeC
Confidence 9999999999999999865
No 72
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=99.95 E-value=4.2e-27 Score=238.18 Aligned_cols=202 Identities=17% Similarity=0.229 Sum_probs=153.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhHHhccccccccccccc-ccCccccchhhHHHhccHHHHHHHHHHHhhhCCCccc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSS 80 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~~~l~~~~~~~~~~~~-l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g~~~~ 80 (676)
|+++|+.+++.|+++|||||||+.+. ..... . .. ++.++.+ .+.+++++++.. +++..|.++|+++
T Consensus 35 ~a~~I~~l~~~G~~vvlV~gGG~~~~-g~~~~-~------~G~~~~~~~~-~~~~la~~~n~~---l~~~~l~~~G~~a- 101 (240)
T 4a7w_A 35 IAKEIKSLVENDIEVGIVIGGGNIIR-GVSAA-Q------GGIIRRTSGD-YMGMLATVINAV---AMQEALEHIGLDT- 101 (240)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTTC-----------------CCCHHHHH-HHHHHHHHHHHH---HHHHHHHHTTCCE-
T ss_pred HHHHHHHHHHCCCcEEEEECCcHHHh-HhHHH-h------cCCCCCCCHH-HHHHHHHHHHHH---HHHHHHHHCCCCE-
Confidence 78999999999999999999976332 11100 0 11 2222110 123455555543 5668999999986
Q ss_pred eEEecccccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeeccccC
Q 005798 81 QLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLSDVE 160 (676)
Q Consensus 81 q~l~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lTdVd 160 (676)
+.++..|+.....+.| .+.+..+|+.|+|||+++ . .|..++|+|++|+++|.+|+||+|+|+||||
T Consensus 102 -v~lt~~d~~~~~~~~~-~~~i~~lL~~g~ipVi~~-----~-------~g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVd 167 (240)
T 4a7w_A 102 -RVQSAIEIKEICESYI-YRKAIRHLEKGRVVIFGA-----G-------TGNPFFTTDTAATLRAIEIGSDLIIKATKVD 167 (240)
T ss_dssp -EEEESSCCTTTSEECC-HHHHHHHHHTTCEEEEES-----T-------TSCTTSCHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred -EEecHHHcCcccCcCc-HHHHHHHHHCCCEEEEeC-----C-------CCCCCCChHHHHHHHHHHcCCCEEEEccCCC
Confidence 5666666654444456 567789999999999997 1 2235799999999999999999999999999
Q ss_pred ccccCCCC-CCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHhCC-cee
Q 005798 161 GLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGK-RVG 238 (676)
Q Consensus 161 GVy~~dP~-~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~i~~~~tg~-~iG 238 (676)
|||++||+ +|++++|++++++|+.+ . +.++| |++++..|.++|++++|+|++.|++|.+.+.|+ .+|
T Consensus 168 Gvy~~dp~~~p~a~~i~~i~~~e~~~---~------g~~~m--~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~G 236 (240)
T 4a7w_A 168 GIYDKDPNKFKDAKKLDTLSYNDALI---G------DIEVM--DDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVF 236 (240)
T ss_dssp SEESSCTTTCTTCCEESEECHHHHHH---S------SCCSS--CHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSC
T ss_pred ceECCCCCCCCCCeEcceecHHHHHh---c------Ccccc--HHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCc
Confidence 99999995 89999999999998764 1 35777 678999999999999999999999997777655 689
Q ss_pred eEE
Q 005798 239 TLF 241 (676)
Q Consensus 239 T~i 241 (676)
|.+
T Consensus 237 T~i 239 (240)
T 4a7w_A 237 SMV 239 (240)
T ss_dssp EEE
T ss_pred eee
Confidence 987
No 73
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=99.95 E-value=3e-27 Score=241.97 Aligned_cols=198 Identities=16% Similarity=0.229 Sum_probs=151.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH---HhcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhhCCCc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR---QRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVT 78 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~---~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g~~ 78 (676)
++++|+.|+ .|+++|||||||+.+.. ..++++..+. + .+++++++++..++ ...|..+|++
T Consensus 52 ~a~~i~~l~-~g~~vVlVhGgG~~~~~~~~~~~g~~~~~~----~--------~~~~l~~~~n~~l~---~~~l~~~Gi~ 115 (256)
T 2va1_A 52 LAEQIEKIS-KKYIVSIVLGGGNIWRGSIAKELDMDRNLA----D--------NMGMMATIINGLAL---ENALNHLNVN 115 (256)
T ss_dssp HHHHHHHHT-TTSEEEEEECCTTTCCHHHHHHTTCCHHHH----H--------HHHHHHHHHHHHHH---HHHHHTTTCC
T ss_pred HHHHHHHHh-CCCEEEEEECCcHHhccchHHHcCCCCCch----h--------HHHHHHHHHHHHHH---HHHHHHcCCC
Confidence 688999998 99999999998864322 2455544211 1 13466666665443 5789999987
Q ss_pred c-ceEEecccccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeecc
Q 005798 79 S-SQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLS 157 (676)
Q Consensus 79 ~-~q~l~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lT 157 (676)
. .+.+++.+++.++ +.+ .+. ..+|+.|+|||++| . +|..|+++|++|+++|.+|+||+|+|+|
T Consensus 116 a~~~~~~t~~~~~~~--~~~-~~~-~~lL~~g~IpVi~~-----~-------~g~~~~~~D~~Aa~lA~~l~Ad~LiilT 179 (256)
T 2va1_A 116 TIVLSAIKCDKLVHE--SSA-NNI-KKAIEKEQVMIFVA-----G-------TGFPYFTTDSCAAIRAAETESSIILMGK 179 (256)
T ss_dssp EEEEESSCCTTTCEE--CCH-HHH-HHHHHTTCEEEEES-----T-------TSSSSCCHHHHHHHHHHHHTCSEEEEEE
T ss_pred eEEEeeeecccccch--hhH-HHH-HHHHhCCcEEEEEC-----C-------CCCCCCChhHHHHHHHHhCCCCEEEEee
Confidence 6 4556666666443 444 455 68999999999997 2 3456799999999999999999999999
Q ss_pred c-cCccccCCCC-CCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHhCC
Q 005798 158 D-VEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGK 235 (676)
Q Consensus 158 d-VdGVy~~dP~-~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~i~~~~tg~ 235 (676)
| |||||++||+ +|++++|++|+++|+.++ + .|+| |++++..|.++|++++|+|++.|+.+.++++|+
T Consensus 180 D~VdGVy~~dP~~~p~a~~i~~is~~e~~~~---~------~~~m--k~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~ 248 (256)
T 2va1_A 180 NGVDGVYDSDPKINPNAQFYEHITFNMALTQ---N------LKVM--DATALALCQENNINLLVFNIDKPNAIVDVLEKK 248 (256)
T ss_dssp SSCCSBCSCC--------CBSEEEHHHHHHH---T------CCSS--CHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTC
T ss_pred cccCeEEcCCCCCCCCCEEccEEcHHHHHHh---c------cCCc--cHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCC
Confidence 9 9999999994 899999999999998753 1 3788 999999999999999999999999999999998
Q ss_pred ceeeEEe
Q 005798 236 RVGTLFH 242 (676)
Q Consensus 236 ~iGT~i~ 242 (676)
..||++.
T Consensus 249 ~~GT~i~ 255 (256)
T 2va1_A 249 NKYTIVS 255 (256)
T ss_dssp SCEEEEE
T ss_pred CCeEEEe
Confidence 8999985
No 74
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=99.95 E-value=8.8e-27 Score=236.42 Aligned_cols=200 Identities=19% Similarity=0.246 Sum_probs=150.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHH-hH--HhcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhhCCCc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGV-GR--QRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVT 78 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i-~~--~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g~~ 78 (676)
++++|+.|++.|+++|||||||+.. +. ..++++.++. + ...++...++. .++...|.++|++
T Consensus 35 ~~~~i~~l~~~g~~vviV~GgG~~~~g~~~~~~~~~~~~~----~--------~~~~~~~~~~~---~l~~~~l~~~G~~ 99 (239)
T 1ybd_A 35 TVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATA----D--------YMGMMATVMNA---LALKDAFETLGIK 99 (239)
T ss_dssp HHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHTTSCHHHH----H--------HHHHHHHHHHH---HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCeEEEEECCcHHHhchhHHHcCCCCccH----H--------HHHHHHHHHHH---HHHHHHHHHcCCC
Confidence 6899999999999999999998643 32 2444443210 0 02233333333 3346889999987
Q ss_pred cc-eEEecccccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeecc
Q 005798 79 SS-QLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLS 157 (676)
Q Consensus 79 ~~-q~l~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lT 157 (676)
.. +...+..++.+ .+.+ .+.+ .+|+.|.|||+++ . .|..++|+|++|+++|.+|+||+|+|+|
T Consensus 100 ~~~~~~~~~~~~~~--~~~~-~~~~-~ll~~g~ipVv~g-----~-------~g~~~~~~D~~Aa~lA~~l~Ad~liilT 163 (239)
T 1ybd_A 100 ARVQSALSMQQIAE--TYAR-PKAI-QYLEEGKVVIFAA-----G-------TGNPFFTTDTAAALRGAEMNCDVMLKAT 163 (239)
T ss_dssp EEEEESSCBSSSCE--ECCH-HHHH-HHHHTTCEEEEES-----T-------TSSTTCCHHHHHHHHHHHTTCSEEEEEC
T ss_pred eEEEeeeccccccc--chhH-HHHH-HHHhCCcEEEEEC-----C-------ccCCCCCcHHHHHHHHHhcCCCEEEEee
Confidence 53 22233233322 1333 5566 7899999999985 2 2345799999999999999999999999
Q ss_pred ccCccccCCCC-CCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHhCCc
Q 005798 158 DVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKR 236 (676)
Q Consensus 158 dVdGVy~~dP~-~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~i~~~~tg~~ 236 (676)
||||||++||+ +|++++|++|+++|+.++ +.++| |++++..|.++|++++|+|++.|+.+.++++|+.
T Consensus 164 dVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---------g~~~m--~~~a~~~a~~~gv~v~I~~~~~~~~l~~~l~g~~ 232 (239)
T 1ybd_A 164 NVDGVYTADPKKDPSATRYETITFDEALLK---------NLKVM--DATAFALCRERKLNIVVFGIAKEGSLKRVITGED 232 (239)
T ss_dssp SSSSCBSSCGGGCTTCCBCSEEEHHHHHHT---------TCCSS--CHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCS
T ss_pred CCCccCCCCCCCCCCCeEccccCHHHHHHh---------ccccc--CHHHHHHHHHcCCcEEEEeCCChhHHHHHHcCCC
Confidence 99999999995 899999999999988641 24677 6779999999999999999999999999999998
Q ss_pred eeeEEec
Q 005798 237 VGTLFHR 243 (676)
Q Consensus 237 iGT~i~~ 243 (676)
.||++.+
T Consensus 233 ~GT~i~~ 239 (239)
T 1ybd_A 233 EGTLVHC 239 (239)
T ss_dssp CSEEEEC
T ss_pred CCeEEcC
Confidence 9999863
No 75
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=99.95 E-value=8.6e-27 Score=245.04 Aligned_cols=224 Identities=21% Similarity=0.218 Sum_probs=162.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhHHhcccccccccccccccCccccchhhHHHhccHH----HHHHHHHHHhhhCCC
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQS----SLMALYDTLFSQLDV 77 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~----~~~~~~~~~l~~~g~ 77 (676)
++++|+.|++.|+++|||||||++++..++++.... .+ + .++ .-.+..+.++++. .++.+|.+.|.++|+
T Consensus 33 ~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~--~~-~--~~~-~~~l~~~~a~~~G~i~~~l~~~l~~~l~~~gi 106 (314)
T 1e19_A 33 TARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQ--AT-Y--GIP-AQPMDVAGAMSQGWIGYMIQQALKNELRKRGM 106 (314)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHH--HH-H--CCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCcc--cc-C--CCC-hhHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Confidence 789999999999999999999999997554433211 01 0 000 0012355555443 257788899999998
Q ss_pred c------cceEEecccc--cCch-----------------------------------------hHhhhHHHHHHHHHhC
Q 005798 78 T------SSQLLVTDSD--FRDE-----------------------------------------DFRKQLYDTVQSLLDL 108 (676)
Q Consensus 78 ~------~~q~l~~~~d--~~~~-----------------------------------------~~~~~~~~~i~~ll~~ 108 (676)
+ .+|+.++..| |..+ .+.++ .+.|+.||++
T Consensus 107 ~a~~~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~~~~~~~~~v~s~~~i~~v~-~~~i~~lL~~ 185 (314)
T 1e19_A 107 EKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVE-AETIKKLVER 185 (314)
T ss_dssp CCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSCEEEEECCCCEEEETT-HHHHHHHHHT
T ss_pred chhhhhhheeeeecccchhhccccccccceecHHHhhhhhhhcCccccccccccccccccCcccceeeh-HHHHHHHHHC
Confidence 5 3566665443 2110 11134 7899999999
Q ss_pred CCeeEEcCCCceecCCCCCCCC---Cc-eecchhHHHHHHHHHcCCCeEeeccccCccccCCCCCCCCceeceeehhchH
Q 005798 109 RVIPIFNENDAVSTRKAPYEDS---SG-IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQ 184 (676)
Q Consensus 109 g~iPVi~~~d~v~~~~~~~~~~---~~-~~~~~D~~A~~lA~~l~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~~e~~ 184 (676)
|+|||++|+..+.... +++ +. .++|+|++|+++|.+|+||+|+|+|||||||++|| +|++++|++|+++|+.
T Consensus 186 g~IpV~~Gg~giPi~~---~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p-~~~a~~i~~i~~~e~~ 261 (314)
T 1e19_A 186 GVIVIASGGGGVPVIL---EDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG-TEKEQWLREVKVEELR 261 (314)
T ss_dssp TCEEECSGGGCEEEEE---ETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT-STTCEECCEEEHHHHH
T ss_pred CCEEEEeCCCccCeEE---CCCCcceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC-CCCCeECCEECHHHHH
Confidence 9998887422222100 001 11 25999999999999999999999999999999998 7899999999999998
Q ss_pred HHHhcCCCCcccccchHHHHHHHHHHHHc-CCcEEEEeCCCcchHHHHHhCCceeeEEec
Q 005798 185 AEITFGDKSRVGRGGMTAKVNAAYCAACA-GIPVVITSGFAMDSIIKVLEGKRVGTLFHR 243 (676)
Q Consensus 185 ~~~~~g~~~~~~~ggM~~K~~aa~~a~~~-gv~v~I~~g~~~~~i~~~~tg~~iGT~i~~ 243 (676)
+++.. +.+.+|||.||+++|..+++. +++++|+|+ +.+.+++++. .||++.+
T Consensus 262 ~~~~~---g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~---~~l~~~~~g~-~GT~i~~ 314 (314)
T 1e19_A 262 KYYEE---GHFKAGSMGPKVLAAIRFIEWGGERAIIAHL---EKAVEALEGK-TGTQVLP 314 (314)
T ss_dssp HHHHT---TCSCTTTHHHHHHHHHHHHHHTCSEEEEEEG---GGHHHHHTTS-SSEEEEC
T ss_pred HHHhC---CCcCCCChHHHHHHHHHHHHhCCCeEEEecH---HHHHHHHcCC-CCeEEcC
Confidence 76653 247789999999999887665 567999984 5688888884 8999863
No 76
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=99.94 E-value=1e-26 Score=237.62 Aligned_cols=201 Identities=18% Similarity=0.243 Sum_probs=155.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCChh-HHhH--HhcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhhCCCc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAV-GVGR--QRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVT 78 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~-~i~~--~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g~~ 78 (676)
++++|+.|++.|+++|||||||+ +.+. ..+++++++. + ...++++.++.. ++.+.|.++|++
T Consensus 35 ~a~~I~~l~~~G~~vVlVhGgG~~~~g~~~~~lg~~~~~~----~--------~~~~~~~~~~~~---ll~~al~~~G~~ 99 (252)
T 1z9d_A 35 IAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQA----D--------YTGMLGTVMNAL---VMADSLQHYGVD 99 (252)
T ss_dssp HHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTCCHHHH----H--------HHHHHHHHHHHH---HHHHHHHTTTCC
T ss_pred HHHHHHHHHhCCCEEEEEECCChHhccchHHHcCCCCCch----H--------HHHHHHHHHHHH---HHHHHHHHcCCC
Confidence 68999999999999999999976 3343 3455544311 1 123444444443 356789999987
Q ss_pred cc-eEEecccccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeecc
Q 005798 79 SS-QLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLS 157 (676)
Q Consensus 79 ~~-q~l~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lT 157 (676)
.. +...+..++.+ .+.+ .+. ..+|+.|+|||++| . .|..++|+|++|+++|.+|+||+|+|+|
T Consensus 100 ~~~~~~~~~~~~~~--~~~~-~~~-~~lL~~g~IpVi~~-----~-------~g~~~~~~D~~Aa~lA~~l~Ad~LiilT 163 (252)
T 1z9d_A 100 TRVQTAIPMQNVAE--PYIR-GRA-LRHLEKNRIVVFGA-----G-------IGSPYFSTDTTAALRAAEIEADAILMAK 163 (252)
T ss_dssp EEEEESSCBTTTBE--ECCH-HHH-HHHHHTTCEEEEES-----T-------TSCTTCCHHHHHHHHHHHTTCSEEEEEE
T ss_pred eEEEeccccccccC--cchH-HHH-HHHHhCCCEEEEeC-----C-------cCCCCCChHHHHHHHHHhcCCCEEEEec
Confidence 53 22233233332 2344 455 78999999999997 2 2334799999999999999999999999
Q ss_pred -ccCccccCCCC-CCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHhCC
Q 005798 158 -DVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGK 235 (676)
Q Consensus 158 -dVdGVy~~dP~-~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~i~~~~tg~ 235 (676)
||||||++||+ +|++++|++|+++|+.+ . +.++| |++++..|.++|++++|+|++.|+.|.++++|+
T Consensus 164 ~DVdGvy~~dP~~~~~a~~i~~i~~~e~~~---~------~~~~m--k~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~ 232 (252)
T 1z9d_A 164 NGVDGVYNADPKKDANAVKFDELTHGEVIK---R------GLKIM--DATASTLSMDNDIDLVVFNMNEAGNIQRVVFGE 232 (252)
T ss_dssp SSCCSCBSSCTTTCTTCCBCSEEEHHHHHT---T------TCCCS--CHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTC
T ss_pred CCCCeeeCCCCCCCCCCeEeeEecHHHHHh---c------ccccc--CHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCC
Confidence 99999999995 89999999999998764 1 24788 889999999999999999999999999999999
Q ss_pred ceeeEEecC
Q 005798 236 RVGTLFHRD 244 (676)
Q Consensus 236 ~iGT~i~~~ 244 (676)
..||+|.++
T Consensus 233 ~~GT~i~~~ 241 (252)
T 1z9d_A 233 HIGTTVSNK 241 (252)
T ss_dssp CCSEEEECC
T ss_pred CCceEEecC
Confidence 899999876
No 77
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.94 E-value=2.7e-26 Score=254.75 Aligned_cols=216 Identities=16% Similarity=0.176 Sum_probs=161.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH--HhcccccccccccccccCccc-cchhhHHHhccHHHHHHHHHHHhhhCCCc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR--QRLRYRKLVNSSLADLQKPQN-ELDGKACAAVGQSSLMALYDTLFSQLDVT 78 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~--~~l~~~~~~~~~~~~l~~~~~-~l~~~~~~avG~~~~~~~~~~~l~~~g~~ 78 (676)
++++|+.|++.|++||||||||++++. ..+++.++. ..++|.|+. .+....++ +|+... .+...|. .|++
T Consensus 63 ~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~~~~~~~~---~~g~r~t~~~~l~~~~~~-~G~~~~--~l~~~l~-~g~~ 135 (456)
T 3d2m_A 63 LAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQGRTPHY---CRGLRVTDETSLGQAQQF-AGTVRS--RFEAALC-GSVS 135 (456)
T ss_dssp HHHHHHHHHHTTCEEEEEECCHHHHHTTTTTTTCCCCC---GGGCCCBCHHHHHHHHHH-HHHHHH--HHHHHHH-TC--
T ss_pred HHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHCCCCCEe---eCCeecCCHHHHHHHHHH-HhHHHH--HHHHHHh-cccc
Confidence 789999999999999999999999875 345554421 133565542 23332233 376654 2345666 5554
Q ss_pred c-----------ceEEecc-------cc--cCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCce-ecch
Q 005798 79 S-----------SQLLVTD-------SD--FRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI-FWDN 137 (676)
Q Consensus 79 ~-----------~q~l~~~-------~d--~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~-~~~~ 137 (676)
. .+++... .| +.+..+.+| .+.|+.||++|.|||++|++ .++ +|.. ++|+
T Consensus 136 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~-~~~i~~lL~~g~ipIi~~~~---~~~-----~g~~~~~~~ 206 (456)
T 3d2m_A 136 GFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTD-TAALRFQLDAGNIVWMPPLG---HSY-----GGKTFNLDM 206 (456)
T ss_dssp ------CCCEECCSCEEEEECCEETTEECBTBEEEEEEC-HHHHHHHHHTTCEEEECSEE---ECT-----TSCEEECCH
T ss_pred cCCCccceeeccCcEEEEEEcccccCcccCceeeEEEEC-HHHHHHHHHCCCeEEECCcc---cCC-----CCCEEEECH
Confidence 3 2222211 02 334566778 79999999999999999842 221 3333 4999
Q ss_pred hHHHHHHHHHcCCCeEeeccccCccccCCCCCCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCc-
Q 005798 138 DSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIP- 216 (676)
Q Consensus 138 D~~A~~lA~~l~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~- 216 (676)
|++|+++|.+|+||+|+|+|||||||++ ++++|++|+++|+.+++..+ +|||.||+++|..|+++|++
T Consensus 207 D~~Aa~lA~~l~Ad~li~lTdvdGv~~~-----~~~~i~~i~~~e~~~~~~~g------~ggm~~Kl~aa~~a~~~gv~~ 275 (456)
T 3d2m_A 207 VQAAASVAVSLQAEKLVYLTLSDGISRP-----DGTLAETLSAQEAQSLAEHA------ASETRRLISSAVAALEGGVHR 275 (456)
T ss_dssp HHHHHHHHHHHTCSEEEEEESSSSCBCT-----TSCBCSEEEHHHHHHHHTTC------CHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHcCCCEEEEEECCccccCC-----CCCccccCCHHHHHHHHhcc------CCChHHHHHHHHHHHHhCCCE
Confidence 9999999999999999999999999987 48999999999988765432 39999999999999999997
Q ss_pred EEEEeCCCcchH-HHHHhCCceeeEEecC
Q 005798 217 VVITSGFAMDSI-IKVLEGKRVGTLFHRD 244 (676)
Q Consensus 217 v~I~~g~~~~~i-~~~~tg~~iGT~i~~~ 244 (676)
++|+|++.++.+ .++++++..||.+.+.
T Consensus 276 v~I~~~~~~~~ll~~l~~~~~~GT~i~~~ 304 (456)
T 3d2m_A 276 VQILNGAADGSLLQELFTRNGIGTSIAKE 304 (456)
T ss_dssp EEEEETTSTTHHHHHHHCSSCSSEEEECC
T ss_pred EEEecCcCCchHHHHHHhhcCCceeeecc
Confidence 999999999998 7778888899999866
No 78
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.94 E-value=7.4e-27 Score=240.79 Aligned_cols=208 Identities=15% Similarity=0.210 Sum_probs=158.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhHH--hcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhhCCCcc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGRQ--RLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTS 79 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~~--~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g~~~ 79 (676)
++++|+.|++. +++|||||||+ +++. .++... .+ ....+..++++++|+..++. +..|..+|++
T Consensus 59 la~~I~~l~~~-~~vVlVhGGg~-~~~~~~~~~~~~-------g~--~~~~~~~~~~~a~G~~~l~~--~~~l~~~G~~- 124 (270)
T 2ogx_B 59 LVDEIVAARKN-HKLLIGTGAGT-RARHLYSIAAGL-------GL--PAGVLAQLGSSVADQNAAML--GQLLAKHGIP- 124 (270)
T ss_dssp HHHHHHHHTTT-CEEEEEECCCH-HHHHHHHHHHHT-------TC--CHHHHHHHHHHHHHHHHHHH--HHHHGGGTCC-
T ss_pred HHHHHHHHhcC-CcEEEEECChH-HHHHHHHHHHhc-------CC--ChHHHHHHHHHHHHHHHHHH--HHHHHhcCCc-
Confidence 78999999887 99999999999 3432 222111 11 11124567889999987653 6778888876
Q ss_pred ceEEecccccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeecccc
Q 005798 80 SQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLSDV 159 (676)
Q Consensus 80 ~q~l~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lTdV 159 (676)
.++..|+. .+..+|++|.|||++|++.+...+-........++|+|++|+++|.+|+||+|+|+|||
T Consensus 125 ---~vt~~d~~----------~i~~lL~~g~ipVi~g~~g~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDV 191 (270)
T 2ogx_B 125 ---VVGGAGLS----------AVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDE 191 (270)
T ss_dssp ---BCCSSTTC----------HHHHHCTTCCEEEEECSCTTGGGCCCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESS
T ss_pred ---eecHhhHH----------HHHHHHhCCCEEEEeCCccccccccccccccCCCCCcHHHHHHHHHhcCCCEEEEEeCC
Confidence 45555532 37889999999999997665542210000113459999999999999999999999999
Q ss_pred CccccCCC-CCCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHhCCcee
Q 005798 160 EGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVG 238 (676)
Q Consensus 160 dGVy~~dP-~~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~i~~~~tg~~iG 238 (676)
||||++|| ++|++++|++++++|+.++...+ ....|||.+|+++|. .+++++|+|++.|+.+.++++|+..|
T Consensus 192 dGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~g---~~~~ggm~~kl~aa~----~~~~v~I~~g~~~~~l~~~l~g~~~G 264 (270)
T 2ogx_B 192 DGLYTANPKTSKDATFIPRISVDEMKAKGLHD---SILEFPVLDLLQSAQ----HVREVQVVNGLVPGNLTRALAGEHVG 264 (270)
T ss_dssp SSEESSCSSSCTTCCEESEEEHHHHHHTTCCC---TTSCHHHHHHHHHCS----SCCEEEEEETTSTTHHHHHHTTCCCS
T ss_pred CcccCCCCCCCCCCeEcceeCHHHHHHHhcCC---CcccHHHHHHHHHhh----cCCcEEEEeCCCchHHHHHHcCCCCC
Confidence 99999999 58999999999999888654332 134589999999885 45799999999999999999999999
Q ss_pred eEEec
Q 005798 239 TLFHR 243 (676)
Q Consensus 239 T~i~~ 243 (676)
|++.+
T Consensus 265 T~i~~ 269 (270)
T 2ogx_B 265 TIITA 269 (270)
T ss_dssp EEEEC
T ss_pred eEecC
Confidence 99874
No 79
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=99.94 E-value=1.8e-26 Score=235.12 Aligned_cols=201 Identities=21% Similarity=0.277 Sum_probs=146.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHH-hH--HhcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhhCCCc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGV-GR--QRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVT 78 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i-~~--~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g~~ 78 (676)
++++|+.|++.|+++|||||||+.. +. ..++++.++. + ...++...++ ..++...|.++|++
T Consensus 36 ~a~~I~~l~~~G~~vVlVhGgG~~~~~~~~~~~g~~~~~~----d--------~~~~~~~~~~---~~ll~~~l~~~G~~ 100 (247)
T 2a1f_A 36 MAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVG----D--------HMGMLATVMN---GLAMRDSLFRADVN 100 (247)
T ss_dssp HHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHHHH----H--------HHHHHHHHHH---HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCeEEEEECCChHhcchhHHHcCCCCCcH----H--------HHHHHHHHHH---HHHHHHHHHHcCCC
Confidence 6899999999999999999997632 22 2444443210 0 0123333333 33356889999987
Q ss_pred cce-EEecccccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeecc
Q 005798 79 SSQ-LLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLS 157 (676)
Q Consensus 79 ~~q-~l~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lT 157 (676)
..- ...+..++.+ .+.+ .+. ..+|+.|.|||+++ . .|..++|+|++|+++|.+|+||+|+|+|
T Consensus 101 ~~~~~~~~~~~~~~--~~~~-~~~-~~ll~~g~ipVi~~-----~-------~g~~~~~~D~~Aa~lA~~l~Ad~liilT 164 (247)
T 2a1f_A 101 AKLMSAFQLNGICD--TYNW-SEA-IKMLREKRVVIFSA-----G-------TGNPFFTTDSTACLRGIEIEADVVLKAT 164 (247)
T ss_dssp EEEEESSCCTTTSE--ECCH-HHH-HHHHHTTCEEEEES-----T-------TSCSSCCHHHHHHHHHHHTTCSEEEEEE
T ss_pred eEEecccccccccc--hhhH-HHH-HHHHhCCCEEEEeC-----C-------cCCCCCCcHHHHHHHHHhCCCCEEEEEe
Confidence 532 2222222322 2344 444 78999999999997 1 2235799999999999999999999999
Q ss_pred ccCccccCCCC-CCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHhCCc
Q 005798 158 DVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKR 236 (676)
Q Consensus 158 dVdGVy~~dP~-~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~i~~~~tg~~ 236 (676)
||||||++||+ +|++++|++++++|+.++ +.++| |++++..|.++|++++|+|++.|+.+.++++|+.
T Consensus 165 DVdGvy~~dP~~~p~a~~i~~i~~~e~~~~---------g~~~m--~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~ 233 (247)
T 2a1f_A 165 KVDGVYDCDPAKNPDAKLYKNLSYAEVIDK---------ELKVM--DLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTE 233 (247)
T ss_dssp SSSSCBCC-------CCBCSEECHHHHHHT---------TCCSS--CHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSC
T ss_pred CCCcccCCCCCCCCCCeEcccCCHHHHHHc---------Ccccc--CHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCC
Confidence 99999999995 899999999999988741 24677 6779999999999999999999999999999999
Q ss_pred eeeEEecC
Q 005798 237 VGTLFHRD 244 (676)
Q Consensus 237 iGT~i~~~ 244 (676)
+||++...
T Consensus 234 ~GT~~~~~ 241 (247)
T 2a1f_A 234 EGTTICEG 241 (247)
T ss_dssp SSEEECCC
T ss_pred CceEEeec
Confidence 99999865
No 80
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.94 E-value=2e-26 Score=239.40 Aligned_cols=217 Identities=14% Similarity=0.145 Sum_probs=160.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH--HhcccccccccccccccCcccc-chhhHHHhccHHHHHHHHHHHhhhCCCc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR--QRLRYRKLVNSSLADLQKPQNE-LDGKACAAVGQSSLMALYDTLFSQLDVT 78 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~--~~l~~~~~~~~~~~~l~~~~~~-l~~~~~~avG~~~~~~~~~~~l~~~g~~ 78 (676)
|+++|+.|+..|.++|||||||+++.. +.++++++. ...+|.|+.+ ++ .+..++|+. ...+...|.+.|++
T Consensus 67 ~~~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~~---~~G~RvTd~~~l~-vv~m~~~~v--n~~lv~~L~~~G~~ 140 (307)
T 3zzh_A 67 LASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDY---IDGIRITDEHTMA-VVRKCFLEQ--NLKLVTALEQLGVR 140 (307)
T ss_dssp HHHHHHHHHHBTCCEEEEECCHHHHHHHHHHTTCCCCE---ETTEECBCHHHHH-HHHHHHHHH--HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHcCCCccc---cCCeecCCHHHHH-HHHHHHHHH--HHHHHHHHHhCCCC
Confidence 789999999999999999999999886 456666532 1347887732 22 112223432 22334667777876
Q ss_pred cceE----Eecc------cccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCcee-cchhHHHHHHHHH
Q 005798 79 SSQL----LVTD------SDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALE 147 (676)
Q Consensus 79 ~~q~----l~~~------~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~-~~~D~~A~~lA~~ 147 (676)
...+ +..+ ..|.+..+.++ .+.|+.+|++|+|||+++ +.+.. +|..+ +|+|++|+++|.+
T Consensus 141 Av~l~gg~~~a~~~~~~d~g~~G~i~~v~-~~~i~~lL~~g~IpVi~~-~g~~~-------~G~~~~i~~D~~A~~lA~~ 211 (307)
T 3zzh_A 141 ARPITSGVFTADYLDKDKYKLVGNIKSVT-KEPIEASIKAGALPILTS-LAETA-------SGQMLNVNADVAAGELARV 211 (307)
T ss_dssp EEEECSSSEEEEESCHHHHBSBEEEEEEC-CHHHHHHHHHTCEEEECC-CEECT-------TCBEEBCCHHHHHHHHHHH
T ss_pred eeEEcCCcEEEEecCccccCccccccccC-HHHHHHHHHCCCEEEEeC-CeECC-------CCcEEecCHHHHHHHHHHh
Confidence 4322 2111 12455666677 789999999999999997 44332 34444 9999999999999
Q ss_pred cCCCeEeeccccCccccCCCCCCCCceeceeehhc-hHHHHhcCCCCcccccchHHHHHHHHHHHHc---CCcEEEEeCC
Q 005798 148 LKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAK-HQAEITFGDKSRVGRGGMTAKVNAAYCAACA---GIPVVITSGF 223 (676)
Q Consensus 148 l~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~~e-~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~---gv~v~I~~g~ 223 (676)
|+||+|+|+|||||||++ |++++|+++++.| ..+++.. ..++|||.||++++..|.+. |.+++|++
T Consensus 212 L~Ad~Li~lTdV~GV~~~----~~~~~i~~i~~~e~~~~l~~~----~~~tGGM~~Kl~aa~~a~~~v~~g~~v~I~~-- 281 (307)
T 3zzh_A 212 FEPLKIVYLNEKGGIING----STGEKISMINLDEEYDDLMKQ----SWVKYGTKLKIREIKELLDYLPRSSSVAIIN-- 281 (307)
T ss_dssp HCCSEEEEECSSCSCEET----TTTEECCEEEHHHHHHHHHTS----TTSCHHHHHHHHHHHHHHHHSCTTCCEEEEC--
T ss_pred CCCCEEEEEeCCcceecC----CCCcCCcccCHHHHHHHHHhC----CCCCCcHHHHHHHHHHHHHHhccCeEEEEeC--
Confidence 999999999999999986 3689999999976 4555543 36799999999976655554 87899998
Q ss_pred CcchH-HHHHhCCceeeEEecC
Q 005798 224 AMDSI-IKVLEGKRVGTLFHRD 244 (676)
Q Consensus 224 ~~~~i-~~~~tg~~iGT~i~~~ 244 (676)
++.+ .++++++..||.+.+.
T Consensus 282 -~~~ll~elft~~g~GT~I~~~ 302 (307)
T 3zzh_A 282 -VQDLQKELFTDSGAGTMIRRG 302 (307)
T ss_dssp -GGGHHHHHHSCCCCSEEEECC
T ss_pred -ccHHHHHHhcCCCCcEEEecC
Confidence 7777 7888999999999876
No 81
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=99.94 E-value=2.8e-26 Score=232.46 Aligned_cols=201 Identities=20% Similarity=0.237 Sum_probs=148.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCChh-HHhH--HhcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhhCCCc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAV-GVGR--QRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVT 78 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~-~i~~--~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g~~ 78 (676)
|+++|++++++|++||||||||. +.+. ..++++... .+ .+.++++.-+ ..++..+|.+.|++
T Consensus 37 la~~i~~l~~~G~~vviV~gGG~~~~~~~~~~~g~~~~~----~d--------~~g~l~t~~N---~~~l~~al~~~G~~ 101 (243)
T 3ek6_A 37 LAHEVIEAQQAGAQVALVIGGGNIFRGAGLAASGMDRVT----GD--------HMGMLATVIN---ALAMQDALEKLGAK 101 (243)
T ss_dssp HHHHHHHHHHTTCEEEEEECSTTTSCSTTTSCSSSCHHH----HH--------HHHHHHHHHH---HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCCCCCC----HH--------HHHHHHHHHH---HHHHHHHHHHcCCC
Confidence 78999999999999999999875 2232 233433211 00 0122222111 22366889999986
Q ss_pred cceEEecccccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeeccc
Q 005798 79 SSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLSD 158 (676)
Q Consensus 79 ~~q~l~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lTd 158 (676)
.. .++..+........+ .+.+..+|+.|+|||+++ . .|..|+|+|++|+++|.+|+||+|+|+||
T Consensus 102 a~--~~~~~~~~~v~~~~~-~~~~~~lL~~g~IpVv~~-----~-------~g~~~~~~D~~Aa~lA~~l~Ad~li~lTd 166 (243)
T 3ek6_A 102 VR--VMSAIKINDVCEDFI-RRRAIRHLEKGRIAIFAA-----G-------TGNPFFTTDSGAALRAIEIGADLLLKATK 166 (243)
T ss_dssp EE--EEESSCBTTTBEECC-HHHHHHHHHTTCEEEEES-----T-------TSSTTCCHHHHHHHHHHHHTCSEEEEECS
T ss_pred eE--EechhhcCcccCcCC-HHHHHHHHHCCcEEEEEC-----C-------CCCCcCChHHHHHHHHHHcCCCEEEEEeC
Confidence 42 222211110011122 456788999999999987 1 33457999999999999999999999999
Q ss_pred cCccccCCCC-CCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHhCCce
Q 005798 159 VEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRV 237 (676)
Q Consensus 159 VdGVy~~dP~-~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~i~~~~tg~~i 237 (676)
|||||++||+ +|++++|++++++|+.+ .+ .++| |++++..|.++|++++|+|++.|+.|.++++|+.+
T Consensus 167 VdGvy~~dp~~~p~a~~i~~i~~~e~~~---~g------~~~~--~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~ 235 (243)
T 3ek6_A 167 VDGVYDKDPKKHSDAVRYDSLTYDEVIM---QG------LEVM--DTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQI 235 (243)
T ss_dssp SSSCBSSCGGGCTTCCBCSEECHHHHHH---HT------CCSS--CHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCC
T ss_pred CCccCCCCCCCCCCceecccccHHHHHh---CC------chhH--HHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCC
Confidence 9999999995 99999999999998764 11 3445 78999999999999999999999999999999999
Q ss_pred eeEEec
Q 005798 238 GTLFHR 243 (676)
Q Consensus 238 GT~i~~ 243 (676)
||++.+
T Consensus 236 GT~i~~ 241 (243)
T 3ek6_A 236 GTLVQG 241 (243)
T ss_dssp SEEECC
T ss_pred ceEEee
Confidence 999875
No 82
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.94 E-value=3e-26 Score=236.72 Aligned_cols=206 Identities=16% Similarity=0.159 Sum_probs=152.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhHHhcccccccccccccccCccccchhhHHHhccHHH---HHHHHHHHhhhCCCc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSS---LMALYDTLFSQLDVT 78 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~---~~~~~~~~l~~~g~~ 78 (676)
|+++|+.|+ .|+++|||||||++ ++..+++... ..++. ..+..+++.. ...+++.++...|++
T Consensus 61 l~~~I~~l~-~G~~vVlV~GGg~~-~~~~~~~~~~-----~gl~~-------~~l~~v~~~~~~~n~~l~~~ll~~~g~~ 126 (276)
T 2ogx_A 61 LVEELRKLL-PEHRLLILTGAGVR-ARHVFSVGLD-----LGLPV-------GSLAPLAASEAGQNGHILAAMLASEGVS 126 (276)
T ss_dssp HHHHHHHHT-TTCEEEEEECCTHH-HHHHHHHHHH-----TTCCH-------HHHHHHHHHHHHHHHHHHHHHHGGGTCC
T ss_pred HHHHHHHHh-CCCeEEEEECcHHH-HHHHHhccCc-----CCCCH-------HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 788999998 89999999999975 3434432111 12221 2333333321 123344555566653
Q ss_pred cceEEecccccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeeccc
Q 005798 79 SSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLSD 158 (676)
Q Consensus 79 ~~q~l~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lTd 158 (676)
.. ...+..+.|..+|++|+|||++||+.+...+.++ +...++|+|++|+++|.+|+||+|+|+||
T Consensus 127 ~v-------------~~~~~~~~i~~lL~~g~IpVi~~~~~~~~~e~~G--~~~~~~~~D~~Aa~lA~~l~Ad~LiilTD 191 (276)
T 2ogx_A 127 YV-------------EHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPG--SRIPPHRADTGAFLLADAFGAAGLTIVEN 191 (276)
T ss_dssp BC-------------CHHHHHHHHHHHHHHSSEEEEESSCTTGGGCCSS--SSSCSSCHHHHHHHHHHHHTCSEEEEEES
T ss_pred cc-------------cccChHHHHHHHHhCCCEEEEcCCcccccccccC--CcCCCCChHHHHHHHHHHcCCCEEEEEeC
Confidence 11 1122378899999999999999987665322100 12246999999999999999999999999
Q ss_pred cCccccCCCC---CCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHhCC
Q 005798 159 VEGLYSGPPS---EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGK 235 (676)
Q Consensus 159 VdGVy~~dP~---~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~i~~~~tg~ 235 (676)
|||||++||+ +|++++|++|+++|+.++. ++|||.+|+.++..+.+.|++++|+||+.|+.+.+.++|+
T Consensus 192 VdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~--------g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~ 263 (276)
T 2ogx_A 192 VDGIYTADPNGPDRGQARFLPETSATDLAKSE--------GPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGE 263 (276)
T ss_dssp SSSEESSCTTSTTGGGCCEESEEEHHHHHTSC--------SCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTC
T ss_pred CCccCCCCCCccCCCCCeEcceeCHHHHHHHh--------CcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHcCC
Confidence 9999999994 7899999999999876432 4899999998888777778899999999999999999998
Q ss_pred ceeeEEecC
Q 005798 236 RVGTLFHRD 244 (676)
Q Consensus 236 ~iGT~i~~~ 244 (676)
..||+|.++
T Consensus 264 ~~GT~i~~~ 272 (276)
T 2ogx_A 264 HVGTLIRTG 272 (276)
T ss_dssp CCSEEEECS
T ss_pred CCceEEccC
Confidence 899999765
No 83
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=99.94 E-value=1.7e-26 Score=234.65 Aligned_cols=193 Identities=20% Similarity=0.256 Sum_probs=141.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH-----HhcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhhCC
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR-----QRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLD 76 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~-----~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g 76 (676)
++++|+.|++ |+++|||||||+.+.. ..+++... .+.. .+++.+.++..+ +++.|..+|
T Consensus 44 ~~~~i~~l~~-g~~vViV~GgG~~~~~~~~~~~~~gl~~~------~~~~------~~~~~~~~~~~l---~~~~l~~~g 107 (244)
T 2brx_A 44 IAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSET------FKDF------IGIQITRANAML---LIAALREKA 107 (244)
T ss_dssp HHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHTTTCCHH------HHHH------HHHHHHHHHHHH---HHHHHGGGB
T ss_pred HHHHHHHHhC-CCeEEEEECccHHHhchHHHHHHcCCCcc------cHHH------HHHHHHHHHHHH---HHHHHHHcC
Confidence 6889999999 9999999999875433 12222210 1111 234444444443 347788888
Q ss_pred CccceEEecccccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeec
Q 005798 77 VTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLL 156 (676)
Q Consensus 77 ~~~~q~l~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~l 156 (676)
++. ++ .+ .+.+..+|+.|+|||++| . ..|+|+|++|+++|.+|+||+|+|+
T Consensus 108 ~~~--------~~------~~-~~~i~~lL~~g~IpVi~g-----g---------~~~~~~D~~Aa~lA~~l~Ad~liil 158 (244)
T 2brx_A 108 YPV--------VV------ED-FWEAWKAVQLKKIPVMGG-----T---------HPGHTTDAVAALLAEFLKADLLVVI 158 (244)
T ss_dssp CSS--------CB------CS-HHHHHHHHHTTCBCEECC-----C---------STTCCHHHHHHHHHHHTTCSEEEEE
T ss_pred CCC--------Cc------CC-HHHHHHHHhCCCEEEEcC-----C---------CCCCCchHHHHHHHHHcCCCEEEEE
Confidence 642 11 22 456778999999999987 1 1357999999999999999999999
Q ss_pred cccCccccCCCC-CCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHH-HcCCcEEEEeCCCcchHHHHHhC
Q 005798 157 SDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAA-CAGIPVVITSGFAMDSIIKVLEG 234 (676)
Q Consensus 157 TdVdGVy~~dP~-~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~-~~gv~v~I~~g~~~~~i~~~~tg 234 (676)
|||||||++||+ +|++++|++|+++|+.+++..+ ...+|||.+|..+|..++ +.|++++|+||+.|+.+.++++|
T Consensus 159 TDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~---g~~~g~m~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g 235 (244)
T 2brx_A 159 TNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKG---IEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKG 235 (244)
T ss_dssp CSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC-----------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTT
T ss_pred eCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhcc---CCCCCCCcchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcC
Confidence 999999999994 8999999999999988765541 245788877766666554 56889999999999999999999
Q ss_pred CceeeEEe
Q 005798 235 KRVGTLFH 242 (676)
Q Consensus 235 ~~iGT~i~ 242 (676)
+..||++.
T Consensus 236 ~~~GT~i~ 243 (244)
T 2brx_A 236 DHNGTTIE 243 (244)
T ss_dssp CSSSEEEC
T ss_pred CCCceEec
Confidence 88999985
No 84
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=99.93 E-value=9e-26 Score=231.52 Aligned_cols=217 Identities=25% Similarity=0.280 Sum_probs=156.3
Q ss_pred HHHHHHHHHHCCC-eEEEEeCChhHHhH--HhcccccccccccccccCcccc-chhhHHHhccHHHHHHHHHHHhhhCCC
Q 005798 2 ICLQLKELNSQGF-EIILVSSGAVGVGR--QRLRYRKLVNSSLADLQKPQNE-LDGKACAAVGQSSLMALYDTLFSQLDV 77 (676)
Q Consensus 2 ~~~~I~~l~~~G~-~vviVhgGg~~i~~--~~l~~~~~~~~~~~~l~~~~~~-l~~~~~~avG~~~~~~~~~~~l~~~g~ 77 (676)
++++|+.+++.|. ++|||||||+++.. +.++++... ..+++.++.+ ++....+..|... ..+-..|.++|+
T Consensus 23 ~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~~~~---~~glr~t~~~~l~~~~~~l~~~~n--~~l~~~l~~~G~ 97 (258)
T 1gs5_A 23 LFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKK---KNGLRVTPADQIDIITGALAGTAN--KTLLAWAKKHQI 97 (258)
T ss_dssp HHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCCE---ETTEECBCHHHHHHHHHHHHTHHH--HHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCCcce---eCCEeeCCHHHHHHHHHHHhccch--HHHHHHHHHCCC
Confidence 6788988887765 58999999998765 334544321 1345555421 2111112222221 122245678888
Q ss_pred ccceEEecccc------------cCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCce-ecchhHHHHHH
Q 005798 78 TSSQLLVTDSD------------FRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI-FWDNDSLAGLL 144 (676)
Q Consensus 78 ~~~q~l~~~~d------------~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~-~~~~D~~A~~l 144 (676)
+..++...+.+ +.+..+..+ .+.|..+|++|.|||++|++ ... +|.. ++|+|++|+++
T Consensus 98 ~a~~l~~~~~~~~~~~~~~~d~~~~g~~~~~~-~~~i~~ll~~g~ipVi~~~g-~~~-------~g~~~~~~~D~~Aa~l 168 (258)
T 1gs5_A 98 AAVGLFLGDGDSVKVTQLDEELGHVGLAQPGS-PKLINSLLENGYLPVVSSIG-VTD-------EGQLMNVNADQAATAL 168 (258)
T ss_dssp CEEEECTTGGGCEEEEECCGGGBSBEEEEECC-CHHHHHHHHTTCEEEECSEE-ECT-------TSCEEECCHHHHHHHH
T ss_pred CeEEEeecCCCEEEEEEcCCCCCCcCceeEEC-HHHHHHHHHCCCEEEEeCCc-CCC-------CCcEEEecHHHHHHHH
Confidence 76554322221 223333445 67899999999999999852 211 3334 59999999999
Q ss_pred HHHcCCCeEeeccccCccccCCCCCCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHH-cCCcEEEEeCC
Q 005798 145 ALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAAC-AGIPVVITSGF 223 (676)
Q Consensus 145 A~~l~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~-~gv~v~I~~g~ 223 (676)
|.+|+|| |+|+|||||||++| +++|++|+++|+.+++..+ .++|||.+|+++|..+++ .+++++|+|++
T Consensus 169 A~~l~Ad-li~ltdV~Gv~~~d-----~~~i~~i~~~e~~~l~~~~----~~~gGm~~k~~~a~~~~~~~~~~v~I~~~~ 238 (258)
T 1gs5_A 169 AATLGAD-LILLSDVSGILDGK-----GQRIAEMTAAKAEQLIEQG----IITDGMIVKVNAALDAARTLGRPVDIASWR 238 (258)
T ss_dssp HHHHTCE-EEEEESSSSCBCTT-----SCBCCEECHHHHHHHHHTT----CSCTHHHHHHHHHHHHHHHHTSCEEEEESS
T ss_pred HHHhCCc-EEEEeCCCceECCC-----CCCCcccCHHHHHHHHhcC----CCCCcHHHHHHHHHHHHHhCCCEEEEecCC
Confidence 9999999 99999999999974 6899999999998766543 679999999999999876 58889999999
Q ss_pred CcchHHHHHhCCceeeEEe
Q 005798 224 AMDSIIKVLEGKRVGTLFH 242 (676)
Q Consensus 224 ~~~~i~~~~tg~~iGT~i~ 242 (676)
.|+.+.++++|+..||++.
T Consensus 239 ~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 239 HAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp CGGGHHHHHTTCCSSEEEC
T ss_pred CchHHHHHhcCCCCcEEEe
Confidence 9999999999988999985
No 85
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=99.93 E-value=7.9e-26 Score=226.31 Aligned_cols=191 Identities=16% Similarity=0.163 Sum_probs=139.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH-----HhcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhhCC
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR-----QRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLD 76 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~-----~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g 76 (676)
++++|+.|++ |+++|||||||+++.. ..++++.. .++. .+++++.++..++ +..|+..
T Consensus 22 ~~~~i~~l~~-g~~vvlV~ggG~~~~~~~~~~~~~g~~~~------~l~~------~~~~~~~~~~~l~---~~~~~~~- 84 (219)
T 2ij9_A 22 FAKTIESVAQ-QNQVFVVVGGGKLAREYIKSARELGASET------FCDY------IGIAATRLNAMLL---ISAIPSA- 84 (219)
T ss_dssp HHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHHTTCCHH------HHHH------HHHHHHHHHHHHH---HHHCTTB-
T ss_pred HHHHHHHHcC-CCEEEEEECcchHhcchHHHHHHcCCCcc------chHH------HHHHHHHHHHHHH---HHHHHHh-
Confidence 6889999999 9999999999987655 23333221 1111 2244444444433 3555442
Q ss_pred CccceEEecccccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeec
Q 005798 77 VTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLL 156 (676)
Q Consensus 77 ~~~~q~l~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~l 156 (676)
+ .| + ..+ .+.+..+|+.|.|||++| . ..|+|+|++|+++|.+|+||+|+|+
T Consensus 85 ~--~~------~------~~~-~~~i~~ll~~g~ipVi~~-----g---------~~~~~~D~~Aa~lA~~l~Ad~li~l 135 (219)
T 2ij9_A 85 A--KK------V------PVD-FMEAEELSKLYRVVVMGG-----T---------FPGHTTDATAALLAEFIKADVFINA 135 (219)
T ss_dssp C--SS------C------CSS-HHHHHHHHTTCSEEEECC-----C---------SSSSCTHHHHHHHHHHTTCSEEEEE
T ss_pred c--CC------C------cCC-HHHHHHHHHCCCEEEEeC-----C---------CCCCCchHHHHHHHHHcCCCeEEEe
Confidence 1 11 1 133 566889999999999997 1 1357999999999999999999999
Q ss_pred cccCccccCCCC-CCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHH-HHHHHcCCcEEEEeCCCcchHHHHHhC
Q 005798 157 SDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAA-YCAACAGIPVVITSGFAMDSIIKVLEG 234 (676)
Q Consensus 157 TdVdGVy~~dP~-~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa-~~a~~~gv~v~I~~g~~~~~i~~~~tg 234 (676)
|||||||++||+ +|++++|++++++|+.+++..+ ...+|||.+|..+| ..+.+.+++++|+|+ .|+.+.++++|
T Consensus 136 TdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~---g~~~g~~~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g 211 (219)
T 2ij9_A 136 TNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRS---SAKAGTNVVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKG 211 (219)
T ss_dssp ESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC--------CCCCCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTT
T ss_pred eCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcC---CCCCCCccchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcC
Confidence 999999999995 8999999999999988654431 14467766665555 455567889999999 99999999999
Q ss_pred CceeeEEe
Q 005798 235 KRVGTLFH 242 (676)
Q Consensus 235 ~~iGT~i~ 242 (676)
+..||++.
T Consensus 212 ~~~GT~i~ 219 (219)
T 2ij9_A 212 EAVGTVIA 219 (219)
T ss_dssp CCCSEEEC
T ss_pred CCCCeEeC
Confidence 88999873
No 86
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.93 E-value=1.9e-25 Score=244.09 Aligned_cols=220 Identities=14% Similarity=0.088 Sum_probs=164.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH--HhcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhhCCCcc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR--QRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTS 79 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~--~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g~~~ 79 (676)
|+++|+.|+..|.++|||||||+++.. +.+++++... .++|.|+.+-...+..++|+.. ..+-..|.+.|++.
T Consensus 77 ~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f~---~G~RvTd~~~l~vv~~~lg~vn--~~lv~aL~~~G~~A 151 (460)
T 3s6g_A 77 LASALAFLQTVGLTPVVVHGGGPQLDAALEAADIPTERV---DGLRVTRDEAMPIIRDTLTQAN--LALVDAIRDAGGRA 151 (460)
T ss_dssp HHHHHHHHHHHTCCCEEEECCHHHHHHHHHHHSCCCCCC---SSSCCBCTTTHHHHHHHHHHHH--HHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCcccc---CCccCCCHHHHHHHHHHHHHHH--HHHHHHHHhCCCCc
Confidence 789999999999999999999999886 4566665321 3477776432122223335322 22324677777653
Q ss_pred ce-----E---Eecccc--cCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCcee-cchhHHHHHHHHHc
Q 005798 80 SQ-----L---LVTDSD--FRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALEL 148 (676)
Q Consensus 80 ~q-----~---l~~~~d--~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~-~~~D~~A~~lA~~l 148 (676)
.. + .++..| |.+.++.++ .+.|+.+|++|.|||++|+ +.++ +|..+ +|+|++|+++|.+|
T Consensus 152 v~lsg~~~~a~~~~~~d~g~~G~I~~v~-~~~i~~lL~~g~IpVi~p~---g~~~-----~G~~~~i~~D~~Aa~lA~~L 222 (460)
T 3s6g_A 152 AAVPRGVFEADIVDADKLGRVGEPRHIH-LDLVGSAARAGQAAILACL---GETP-----DGTLVNINADVAVRALVHAL 222 (460)
T ss_dssp EEECSSSEEEEESCTTTTBSEEEEEEEC-CHHHHHHHHTTCEEEEECE---EECT-----TCCEEEECHHHHHHHHHHHH
T ss_pred eEEecCeEEEEEecCcccCccCcceEEc-HHHHHHHHHCCcEEEEECc---eECC-----CCcEEecCHHHHHHHHHHHc
Confidence 32 1 112223 346666777 7899999999999999973 3321 34444 99999999999999
Q ss_pred CCCeEeeccccCccccCCCCCCCCceeceeehh-chHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcch
Q 005798 149 KADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRA-KHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDS 227 (676)
Q Consensus 149 ~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~~-e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~ 227 (676)
+||+|+|+|||||||++ ++++|++|+.. |+.+++.. ..++|||.+|+++|..|.+.+.+++|++++.++.
T Consensus 223 ~Ad~LiilTdv~Gv~~~-----~~~lI~~i~~~~e~~~l~~~----~~~tGGM~~Kl~aa~~a~~gv~~v~iv~g~~~~~ 293 (460)
T 3s6g_A 223 QPYKVVFLTGTGGLLDE-----DGDILSSINLATDFGDLMQA----DWVNGGMRLKLEEIKRLLDDLPLSSSVSITRPSE 293 (460)
T ss_dssp CCSEEEEECSSCSCBCT-----TSSBCCEEEHHHHHHHHHHC----SSSCHHHHHHHHHHHHHHHTSCTTCEEEEECGGG
T ss_pred CCCEEEEEeCCccccCC-----CCeecceeCcHHHHHHHHhc----CCCCCcHHHHHHHHHHHHhCCCcEEEEEeCCCcH
Confidence 99999999999999986 47999999986 66665553 3679999999999999988433599999999999
Q ss_pred H-HHHHhCCceeeEEecC
Q 005798 228 I-IKVLEGKRVGTLFHRD 244 (676)
Q Consensus 228 i-~~~~tg~~iGT~i~~~ 244 (676)
| .++++++.+||.+.+.
T Consensus 294 Ll~eLft~~g~GT~i~~~ 311 (460)
T 3s6g_A 294 LARELFTHAGSGTLIRRG 311 (460)
T ss_dssp HHHHHHSSCCSSEEEECC
T ss_pred HHHHHhcCCCCceEEEcC
Confidence 8 5788999999999876
No 87
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.93 E-value=2e-25 Score=243.26 Aligned_cols=217 Identities=14% Similarity=0.142 Sum_probs=160.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH--HhcccccccccccccccCcccc-chhhHHHhccHHHHHHHHHHHhhhCCCc
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR--QRLRYRKLVNSSLADLQKPQNE-LDGKACAAVGQSSLMALYDTLFSQLDVT 78 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~--~~l~~~~~~~~~~~~l~~~~~~-l~~~~~~avG~~~~~~~~~~~l~~~g~~ 78 (676)
|+++|+.|+..|.++|||||||+++.. +.++++++. ..++|+|+.+ ++ .+..++|+ +...+...|.+.|++
T Consensus 67 la~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f---~~G~RvTd~~tl~-vv~mv~~~--vn~~lv~~L~~~G~~ 140 (464)
T 4ab7_A 67 LASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDY---IDGIRITDEHTMA-VVRKCFLE--QNLKLVTALEQLGVR 140 (464)
T ss_dssp HHHHHHHHHHTTCCCEEEECCCHHHHHHHHHTTCCCCE---ETTEECBCHHHHH-HHHHHHHH--HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCccc---cCCeecCCHHHHH-HHHHHHHH--HHHHHHHHHHhCCCC
Confidence 789999999999999999999999886 466666532 1458887642 22 12222343 223345677777876
Q ss_pred cceE----Eecc------cccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCcee-cchhHHHHHHHHH
Q 005798 79 SSQL----LVTD------SDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALE 147 (676)
Q Consensus 79 ~~q~----l~~~------~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~-~~~D~~A~~lA~~ 147 (676)
...+ +... ..|.+.++.++ .+.|+.+|+.|+|||++| +++.. +|..+ +|+|++|+++|.+
T Consensus 141 Avglsgg~~~a~~~~~~d~g~vG~I~~v~-~~~I~~lL~~G~IPVi~~-~g~~~-------~G~~~ni~~D~~Aa~lA~~ 211 (464)
T 4ab7_A 141 ARPITSGVFTADYLDKDKYKLVGNIKSVT-KEPIEASIKAGALPILTS-LAETA-------SGQMLNVNADVAAGELARV 211 (464)
T ss_dssp EEEECSSSEEEEESCTTTTBSBEEEEEEC-CHHHHHHHHTTCEEEEES-EEECT-------TCBEEECCHHHHHHHHHHH
T ss_pred eEEECCCcEEEEecCccccCCcCcccccC-HHHHHHHHHCCcEEEEcC-CcCCC-------CCCEEEecHHHHHHHHHHH
Confidence 4322 1111 12456666677 789999999999999998 33321 34444 9999999999999
Q ss_pred cCCCeEeeccccCccccCCCCCCCCceeceeehhc-hHHHHhcCCCCcccccchHHHHHHHHHHHHc---CCcEEEEeCC
Q 005798 148 LKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAK-HQAEITFGDKSRVGRGGMTAKVNAAYCAACA---GIPVVITSGF 223 (676)
Q Consensus 148 l~Ad~li~lTdVdGVy~~dP~~~~a~~i~~i~~~e-~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~---gv~v~I~~g~ 223 (676)
|+||+|+|+|||||||++ |++++|++|+.+| ..+++.. ..++|||.||++++..|.+. |.+++|++
T Consensus 212 L~Ad~Li~lTdV~GV~~~----~~~~lI~~it~~e~~~~li~~----~~~tgGM~pKl~aa~aa~~~v~~g~~v~I~~-- 281 (464)
T 4ab7_A 212 FEPLKIVYLNEKGGIING----STGEKISMINLDEEYDDLMKQ----SWVKYGTKLKIREIKELLDYLPRSSSVAIIN-- 281 (464)
T ss_dssp HCCSEEEEEESSCSEECT----TTCCEECEEEHHHHHHHHHTC----SSCCHHHHHHHHHHHHHHTTSCTTCEEEEEE--
T ss_pred cCCCEEEEEecccccccC----CCCcCCcccCHHHHHHHHHhc----CCCCCcHHHHHHHHHHHHHhcccCcEEEEec--
Confidence 999999999999999987 3689999999976 4545543 36799999999977766664 77799998
Q ss_pred CcchH-HHHHhCCceeeEEecC
Q 005798 224 AMDSI-IKVLEGKRVGTLFHRD 244 (676)
Q Consensus 224 ~~~~i-~~~~tg~~iGT~i~~~ 244 (676)
++.+ .++++++.+||.+.+.
T Consensus 282 -~~~ll~eLft~~g~GT~I~~~ 302 (464)
T 4ab7_A 282 -VQDLQKELFTDSGAGTMIRRG 302 (464)
T ss_dssp -STTHHHHTTSSSTTSEEEECC
T ss_pred -ChHHHHHHhcCCCCceEEecC
Confidence 6666 6888999999999877
No 88
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=99.92 E-value=1.1e-24 Score=222.89 Aligned_cols=202 Identities=17% Similarity=0.202 Sum_probs=150.1
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHH-hH--HhcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhh-CCC
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGV-GR--QRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQ-LDV 77 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i-~~--~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~-~g~ 77 (676)
++++|+.+++.|+++|||||||+.+ +. ..+++++. ..+ .++++++.++..+ +...|.. +|+
T Consensus 40 ~a~~I~~l~~~G~~vViV~GgG~~~~~~~~~~~g~~~~------~~~------~~~~~~~~~~~~l---l~~~l~~~~Gi 104 (255)
T 2jjx_A 40 IANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRV------EAD------NIGTLGTIINSLM---LRGVLTSKTNK 104 (255)
T ss_dssp HHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHTTCCHH------HHH------HHHHHHHHHHHHH---HHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCeEEEEECchHHHhhhHHHHcCCCCC------ChH------HHhHHHHHHHHHH---HHHHHHhhcCC
Confidence 6889999999999999999998754 32 23444321 011 1245555555442 4578888 998
Q ss_pred ccceEEecccccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeecc
Q 005798 78 TSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLS 157 (676)
Q Consensus 78 ~~~q~l~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lT 157 (676)
+.. .++..++.......+....+ .+|+.|+|||++| + +|..++++|++|+++|.+|+||+|+|+|
T Consensus 105 ~a~--~l~~~~~~~v~~~~~~~~~~-~lL~~g~IpVi~g-g-----------~g~~~vttD~~Aa~lA~~l~Ad~liilT 169 (255)
T 2jjx_A 105 EVR--VMTSIPFNAVAEPYIRLRAV-HHLDNGYIVIFGG-G-----------NGQPFVTTDYPSVQRAIEMNSDAILVAK 169 (255)
T ss_dssp CEE--EEESSCCCSSSEECCHHHHH-HHHHTTCEEEEES-T-----------TSCSSCCSHHHHHHHHHHHTCSEEEEEE
T ss_pred ceE--EecHHHcCcccCcccHHHHH-HHHhCCcEEEEeC-C-----------CCCCccchHHHHHHHHHhcCCCEEEEEe
Confidence 754 23332221111122434555 8999999999996 1 1223588999999999999999999999
Q ss_pred -ccCccccCCCC-CCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHhCC
Q 005798 158 -DVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGK 235 (676)
Q Consensus 158 -dVdGVy~~dP~-~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~i~~~~tg~ 235 (676)
||||||++||+ +|++++|++|+++|+.+ . ++|+|.+ .++..+.+.|++++|+|++.|+.+.++++|+
T Consensus 170 ~DVdGVy~~dP~~~p~a~~i~~is~~e~~~---~------G~~~m~~--~a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~ 238 (255)
T 2jjx_A 170 QGVDGVFTSDPKHNKSAKMYRKLNYNDVVR---Q------NIQVMDQ--AALLLARDYNLPAHVFNFDEPGVMRRICLGE 238 (255)
T ss_dssp SSCCSCBSSCTTTCSSCCBCSEEEHHHHHH---T------TCCSSCH--HHHHHHHHHTCCEEEEETTSTTHHHHHHBTC
T ss_pred CCcCeeECCCCCCCCCCeEeeEecHHHHHH---c------CCccCHH--HHHHHHHHcCCeEEEEeCCCchHHHHHhcCC
Confidence 99999999995 89999999999988764 1 3578875 4666677799999999999999999999998
Q ss_pred ceeeEEecC
Q 005798 236 RVGTLFHRD 244 (676)
Q Consensus 236 ~iGT~i~~~ 244 (676)
..||+|.++
T Consensus 239 ~~GT~I~~~ 247 (255)
T 2jjx_A 239 HVGTLINDD 247 (255)
T ss_dssp CCSEEEESS
T ss_pred CCceEEecC
Confidence 899999874
No 89
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.91 E-value=2.4e-25 Score=243.48 Aligned_cols=222 Identities=17% Similarity=0.125 Sum_probs=160.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhH--HhcccccccccccccccCccccchhhHHHhccHHH---HHHHHHHHhhhCC
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGR--QRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSS---LMALYDTLFSQLD 76 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~--~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~---~~~~~~~~l~~~g 76 (676)
|+++|+.|+..|.++|||||||+++.. +.+++++.. ..++|.|+.+-...+..++|+.. +..+.+..+++.+
T Consensus 80 va~dI~~l~~~G~~~VvVHGgg~~i~~~l~~~gi~~~f---~~G~RvTd~~~l~vv~~~~g~vn~~Lv~aL~~~G~~Av~ 156 (467)
T 3s6k_A 80 LTSSLSFLQEVGLTPIVLHGAGPQLDAELSAAGIEKQT---VNGLRVTSPHALAIVRKVFQASNLKLVEALQQNGARATS 156 (467)
T ss_dssp HHHHHHHHHTTSCCCCCCCCCCHHHHHHHHTTSCCCCC---CSSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC
T ss_pred HHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCccc---cCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceE
Confidence 789999999999999999999999886 355655532 13477776321111222334322 1222223333444
Q ss_pred CccceE---Eecccc--cCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCce-ecchhHHHHHHHHHcCC
Q 005798 77 VTSSQL---LVTDSD--FRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI-FWDNDSLAGLLALELKA 150 (676)
Q Consensus 77 ~~~~q~---l~~~~d--~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~-~~~~D~~A~~lA~~l~A 150 (676)
+.+.++ .++..| |.++++.++ .+.|+.+|++|.|||+++++. .+ +|.. ++|+|++|+++|.+|+|
T Consensus 157 lsg~~~~a~~~~~~d~g~~G~I~~v~-~~~i~~lL~~g~IpVi~pvg~---~~-----~G~~~~i~~D~~Aa~lA~~L~A 227 (467)
T 3s6k_A 157 ITGGVFEAEYLNRDTYGLVGEVKAVN-LAPIEASLQAGSIPVITSLGE---TP-----SGQILNVNADFAANELVQELQP 227 (467)
T ss_dssp CCSSSBCCCBSCSSSSBSBBCCCCBC-CHHHHTHHHHTCBCCCCSCCC---CS-----SSCCCBCCHHHHHHHHHHHHCC
T ss_pred EcCccEEEEeccCcccCccceEEEEc-HHHHHHHHHCCCEEEEECceE---CC-----CCcEEecCHHHHHHHHHHhcCC
Confidence 443322 112223 456677777 789999999999999997432 11 2333 49999999999999999
Q ss_pred CeEeeccccCccccCCCCCCCCceeceeehh-chHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcchH-
Q 005798 151 DLLVLLSDVEGLYSGPPSEPNSKLIHTYIRA-KHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSI- 228 (676)
Q Consensus 151 d~li~lTdVdGVy~~dP~~~~a~~i~~i~~~-e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~i- 228 (676)
|+|+|+|||||||++ ++++|++|+.. |+.+++.. ..++|||.+|+++|..|.+.+.+++|++++.++.+
T Consensus 228 d~LiilTdv~Gv~~~-----~~~lI~~i~~~~e~~~l~~~----~~~tGGM~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll 298 (467)
T 3s6k_A 228 YKIIFLTGTGGLLDA-----EGKLIDSINLSTEYDHLMQQ----PWINGGMRVKIEQIKDLLDRLPLESSVSITRPADLA 298 (467)
T ss_dssp SSCCCCCSSCSCCCS-----SCCCCCCCCTTTTTHHHHTS----SSCCSHHHHHHHHHHHHHTTSCSSCCBCCCCTTTHH
T ss_pred CEEEEEecccceeCC-----CCCCccccChHHHHHHHHhc----CCCCCchHHHHHHHHHHHhCCCcEEEEEeCCchHHH
Confidence 999999999999986 47899999986 66665543 36799999999999999874335999999999998
Q ss_pred HHHHhCCceeeEEecC
Q 005798 229 IKVLEGKRVGTLFHRD 244 (676)
Q Consensus 229 ~~~~tg~~iGT~i~~~ 244 (676)
.++++++.+||.+.+.
T Consensus 299 ~eLft~~g~GT~i~~~ 314 (467)
T 3s6k_A 299 KELFTHKGSGTLVRRG 314 (467)
T ss_dssp HHHHSSCTTSCCBCCC
T ss_pred HHHhcCCCcceEEeCC
Confidence 5788999999999876
No 90
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=99.90 E-value=4.8e-24 Score=242.13 Aligned_cols=210 Identities=17% Similarity=0.184 Sum_probs=155.6
Q ss_pred HHHHHHHHHHCCCeEEEEeCC-hhHHhHHhcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhhCCCc--
Q 005798 2 ICLQLKELNSQGFEIILVSSG-AVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVT-- 78 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgG-g~~i~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g~~-- 78 (676)
++++|+.++++|+++|||||| |. ..+.++++.......+ +. -.++++.++|+..++.+|...|+.+|++
T Consensus 22 va~~i~~~~~~g~~vvvV~sa~G~-~t~~ll~~~~~~~~~~-~~------~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~ 93 (600)
T 3l76_A 22 VAQRIKRTVQGGNSLVVVVSAMGK-STDVLVDLAQQISPNP-CR------REMDMLLSTGEQVSIALLSLALQEIDQPAI 93 (600)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSST-HHHHHHHHHHHHCSSC-CH------HHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHCCCcEEEEECCCcH-HHHHHHHHHHhhccCC-CH------HHHHHHHHHhHHHHHHHHHHHHHhCCCCeE
Confidence 688999999999999999999 54 3444454332111000 11 1256999999999999999999999987
Q ss_pred ---cceEEecccccCchhHhhhH-HHHHHHHHhCCCeeEEcC------CCceecCCCCCCCCCceecchhHHHHHHHHHc
Q 005798 79 ---SSQLLVTDSDFRDEDFRKQL-YDTVQSLLDLRVIPIFNE------NDAVSTRKAPYEDSSGIFWDNDSLAGLLALEL 148 (676)
Q Consensus 79 ---~~q~l~~~~d~~~~~~~~~~-~~~i~~ll~~g~iPVi~~------~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l 148 (676)
+.|..++.+++.+..+..+. .+.|..+|+.|.|||++| ++.+.. ..+.++++|++|+++|.+|
T Consensus 94 ~l~~~~~~l~~~~~~~~~~~~~~~~~~i~~ll~~g~IpVv~Gf~g~~~~g~~~~-------~tlgrGgsD~~Aa~lA~~l 166 (600)
T 3l76_A 94 SLTGAQVGIVTEAEHSRARILEIRPDRLEHHLREGKVVVVAGFQGISSVEHLEI-------TTLGRGGSDTSAVALAAAL 166 (600)
T ss_dssp EEEGGGTEEEEC-------CCEEEECCHHHHHTTTCEEEEECEEEC----CEEE-------ECCCTTHHHHHHHHHHHHH
T ss_pred EechhHcceEEecCCCCceeccccHHHHHHHHhCCCEEEEECCeecCCCCCEEE-------ecCCCCChHHHHHHHHHHc
Confidence 44543333333333232221 367889999999999975 221111 1234578999999999999
Q ss_pred CCCeEeeccccCccccCCCC-CCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcch
Q 005798 149 KADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDS 227 (676)
Q Consensus 149 ~Ad~li~lTdVdGVy~~dP~-~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~ 227 (676)
+||+|+|||||||||++||+ +|++++|++++++|+.++.. +++|+|.| +++..|.++|+|++|.|++++
T Consensus 167 ~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~------~G~~vm~p--~a~~~a~~~gipv~I~n~~~~-- 236 (600)
T 3l76_A 167 KADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELAS------LGAKVLHP--RAVEIARNYGIPLVVRSSWSD-- 236 (600)
T ss_dssp TCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGG------GGTTTCCH--HHHHHHHHHTCCEEEEETTCC--
T ss_pred CCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHh------CCCCccHH--HHHHHHHHCCCeEEEEECCCC--
Confidence 99999999999999999995 89999999999999987544 56899999 799999999999999998864
Q ss_pred HHHHHhCCceeeEEecC
Q 005798 228 IIKVLEGKRVGTLFHRD 244 (676)
Q Consensus 228 i~~~~tg~~iGT~i~~~ 244 (676)
..||+|...
T Consensus 237 --------~~GT~I~~~ 245 (600)
T 3l76_A 237 --------EPGTKVVAP 245 (600)
T ss_dssp --------SCCEEEECC
T ss_pred --------CCCeEEecC
Confidence 258998765
No 91
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=99.90 E-value=9.6e-24 Score=231.04 Aligned_cols=215 Identities=19% Similarity=0.199 Sum_probs=146.8
Q ss_pred HHHHHHHHHHCCCeEEEEeCChhHHhHHhcccccccccccccccCccccchhhHHHhccHHHHHHHHHHHhhhCCCcc--
Q 005798 2 ICLQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTS-- 79 (676)
Q Consensus 2 ~~~~I~~l~~~G~~vviVhgGg~~i~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~avG~~~~~~~~~~~l~~~g~~~-- 79 (676)
++++|+.+++.|+++||||||+...+..+++........+ +. -.++++.++|+.....++...|+.+|++.
T Consensus 22 v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~~~~~-~~------~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~ 94 (421)
T 3ab4_A 22 VAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNPVP-PA------REMDMLLTAGERISNALVAMAIESLGAEAQS 94 (421)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHHCSSC-CH------HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhhccCC-CH------HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEE
Confidence 6789999999999999999854334554555432211000 11 12457788899888888999999999875
Q ss_pred ---ceE-EecccccCc-hhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEe
Q 005798 80 ---SQL-LVTDSDFRD-EDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLV 154 (676)
Q Consensus 80 ---~q~-l~~~~d~~~-~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li 154 (676)
.|. +++.+.|.. +...++ .+.|..+|+.|.|||++|...+... .+.-....++++|++|+++|.+|+||+|+
T Consensus 95 l~~~~~~~~t~~~~~~~~v~~~~-~~~i~~~l~~g~ipVv~g~~g~~~~--~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~ 171 (421)
T 3ab4_A 95 FTGSQAGVLTTERHGNARIVDVT-PGRVREALDEGKICIVAGFQGVNKE--TRDVTTLGRGGSDTTAVALAAALNADVCE 171 (421)
T ss_dssp CCCC-----------------CC-HHHHHHHHHTTCEEEC--------------------CCHHHHHHHHHHHHTCSEEE
T ss_pred EehhhceEEeccCCCCeeechhh-HHHHHHHHhCCCEEEEeCCcCcCCC--CCceEEeCCCCHHHHHHHHHHHCCCCEEE
Confidence 455 455444432 223334 5789999999999999873222210 00001123469999999999999999999
Q ss_pred eccccCccccCCCC-CCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHh
Q 005798 155 LLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLE 233 (676)
Q Consensus 155 ~lTdVdGVy~~dP~-~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~i~~~~t 233 (676)
|||||||||++||+ +|++++|++|+++|+.++...| .|..|++++..|.++|+|++|.|++++
T Consensus 172 i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~G--------a~v~~~~a~~~a~~~gi~v~I~n~~~~-------- 235 (421)
T 3ab4_A 172 IYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVG--------SKILVLRSVEYARAFNVPLRVRSSYSN-------- 235 (421)
T ss_dssp EEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTT--------CCSSCHHHHHHHHHTTCCEEEEESSSC--------
T ss_pred EEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcC--------CcCchHHHHHHHHHcCCCEEEecCcCC--------
Confidence 99999999999995 8999999999999999766533 345677899999999999999999876
Q ss_pred CCceeeEEecC
Q 005798 234 GKRVGTLFHRD 244 (676)
Q Consensus 234 g~~iGT~i~~~ 244 (676)
..||+|...
T Consensus 236 --~~GT~I~~~ 244 (421)
T 3ab4_A 236 --DPGTLIAGS 244 (421)
T ss_dssp --CCCEEECSC
T ss_pred --CCCeEEEec
Confidence 369999865
No 92
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=99.83 E-value=2.8e-20 Score=206.46 Aligned_cols=166 Identities=14% Similarity=0.187 Sum_probs=134.6
Q ss_pred hhHHHhccHHHHHHHHHHHhhhCCCc-----cceE-EecccccCch----hHhhhHHHHHHH-HHhCCCeeEEcCC----
Q 005798 53 GKACAAVGQSSLMALYDTLFSQLDVT-----SSQL-LVTDSDFRDE----DFRKQLYDTVQS-LLDLRVIPIFNEN---- 117 (676)
Q Consensus 53 ~~~~~avG~~~~~~~~~~~l~~~g~~-----~~q~-l~~~~d~~~~----~~~~~~~~~i~~-ll~~g~iPVi~~~---- 117 (676)
++++.+.|+..+..++...|+.+|++ +.|+ ++++++|.+. .++.+..+.+.. |++.|.|||++|+
T Consensus 140 ~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~ 219 (510)
T 2cdq_A 140 RDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKG 219 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHeeEEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccC
Confidence 57889999999999999999999986 4566 7777776543 233344566664 7899999999762
Q ss_pred ---CceecCCCCCCCCCceecchhHHHHHHHHHcCCCeEeeccccCccccCCCC-CCCCceeceeehhchHHHHhcCCCC
Q 005798 118 ---DAVSTRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKS 193 (676)
Q Consensus 118 ---d~v~~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lTdVdGVy~~dP~-~~~a~~i~~i~~~e~~~~~~~g~~~ 193 (676)
+.+.+ ..++++|++|+++|.+|+||.|+|||||||||++||+ +|++++|++|+++|+.++..
T Consensus 220 ~~~g~itt---------lgrGgsD~tAa~lA~~l~Ad~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~----- 285 (510)
T 2cdq_A 220 WKTGAVTT---------LGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAY----- 285 (510)
T ss_dssp TTTCCEEE---------CCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHH-----
T ss_pred CCCCceEE---------eCCCChHHHHHHHHHHcCCCEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHh-----
Confidence 22222 2347799999999999999999999999999999995 89999999999999986543
Q ss_pred cccccchHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHHhCCceeeEEecC
Q 005798 194 RVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 244 (676)
Q Consensus 194 ~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~i~~~~tg~~iGT~i~~~ 244 (676)
++.++|+|| ++..|.++|||++|.|+++|+ ..||+|...
T Consensus 286 -~Ga~vmh~~--a~~~a~~~gIpv~I~n~~~p~---------~~GT~I~~~ 324 (510)
T 2cdq_A 286 -FGAQVLHPQ--SMRPAREGEIPVRVKNSYNPK---------APGTIITKT 324 (510)
T ss_dssp -HHSSCCCHH--HHHHHHHHTCCEEEEETTSTT---------SCCEEEESC
T ss_pred -cCcchhHHH--HHHHHHHCCCeEEEEccCcCC---------CCCeEEecc
Confidence 457889875 889999999999999998875 369999865
No 93
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=99.82 E-value=3.5e-20 Score=203.47 Aligned_cols=169 Identities=22% Similarity=0.209 Sum_probs=129.9
Q ss_pred hhhHHHhccHHHHHHHHHHHhhhCCCcc-----ceEEecccccCchhH-----hhhHHHHHHHHHhCCCeeEEcCCCcee
Q 005798 52 DGKACAAVGQSSLMALYDTLFSQLDVTS-----SQLLVTDSDFRDEDF-----RKQLYDTVQSLLDLRVIPIFNENDAVS 121 (676)
Q Consensus 52 ~~~~~~avG~~~~~~~~~~~l~~~g~~~-----~q~l~~~~d~~~~~~-----~~~~~~~i~~ll~~g~iPVi~~~d~v~ 121 (676)
.++++.++|+..++.++...|+.+|+++ .|+++|+++|.+... ..+..+.+..|++.+ |||++|. ++
T Consensus 110 ~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~l~t~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-IpVv~Gf--~g 186 (449)
T 2j0w_A 110 LTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLNEG-LVITQGF--IG 186 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSCTTSCCBCHHHHHHHHHHHTHHHHHHS-EEEEESS--EE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHheeecCCCCCccccHhHhHHHHHHHHHHHhcCC-EEEEeCC--ee
Confidence 3578999999999999999999999876 677778777664322 122345677777655 9999752 11
Q ss_pred cCCCCCCCCCceecchhHHHHHHHHHcCCCeEeeccccCccccCCCC-CCCCceeceeehhchHHHHhcCCCCcccccch
Q 005798 122 TRKAPYEDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGM 200 (676)
Q Consensus 122 ~~~~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lTdVdGVy~~dP~-~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM 200 (676)
.++ .+......++++|++|+++|.+|+||.|+|||||||||++||+ +|++++|++++++|+.++...|
T Consensus 187 ~~~-~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~DPr~~~~a~~i~~is~~e~~ela~~G---------- 255 (449)
T 2j0w_A 187 SEN-KGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFG---------- 255 (449)
T ss_dssp ECT-TSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHHHHHTT----------
T ss_pred eCC-CCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCCCCCCCCCEEccCccHHHHHHHHhcC----------
Confidence 111 0000112347799999999999999999999999999999995 8999999999999998755432
Q ss_pred HHHH---HHHHHHHHcCCcEEEEeCCCcchHHHHHhCCceeeEEecC
Q 005798 201 TAKV---NAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 244 (676)
Q Consensus 201 ~~K~---~aa~~a~~~gv~v~I~~g~~~~~i~~~~tg~~iGT~i~~~ 244 (676)
+|+ +++..|.++|+|++|.|+++|+ ..||++...
T Consensus 256 -~kvlh~~a~~~a~~~gi~v~I~~~~~p~---------~~GT~I~~~ 292 (449)
T 2j0w_A 256 -AKVLHPATLLPAVRSDIPVFVGSSKDPR---------AGGTLVCNK 292 (449)
T ss_dssp -CTTSCTTTHHHHHHHTCCEEEEESSCTT---------SCCEEEESC
T ss_pred -CccchHHHHHHHHHCCCeEEEEECCCCC---------CCeeEEecc
Confidence 355 6888999999999999999875 479999866
No 94
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=99.81 E-value=1.5e-19 Score=200.40 Aligned_cols=171 Identities=19% Similarity=0.268 Sum_probs=134.1
Q ss_pred hhHHHhccHHHHHHHHHHHhhhCCCcc-----ceE-EecccccCchhH--hhhHHHHHHHHHhCCCeeEEcCCCceecCC
Q 005798 53 GKACAAVGQSSLMALYDTLFSQLDVTS-----SQL-LVTDSDFRDEDF--RKQLYDTVQSLLDLRVIPIFNENDAVSTRK 124 (676)
Q Consensus 53 ~~~~~avG~~~~~~~~~~~l~~~g~~~-----~q~-l~~~~d~~~~~~--~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~ 124 (676)
...+.+.|+.....++...|++.|+++ .+. +++..+|..... ..+ .+.|..+|+.|+|||++|.-+....+
T Consensus 122 ~d~~~~~ge~~s~~l~~~~L~~~G~~a~~l~~~~~~i~t~~~~~~~~~~~~~~-~~~i~~ll~~g~ipVv~G~~g~~~~g 200 (473)
T 3c1m_A 122 RDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV-KERLLPLLKEGIIPVVTGFIGTTEEG 200 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTEEECSCTTSCCEEEECH-HHHHHHHHHTTCEEEEESSEEEETTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEchheeEEEccCCCCccccHhhh-HHHHHHHHhCCcEEEEeCCcccCCCC
Confidence 456777788888888889999999875 344 677666653222 334 78899999999999998632221100
Q ss_pred CCCCCCCceecchhHHHHHHHHHcCCCeEeeccccCccccCCCC-CCCCceeceeehhchHHHHhcCCCCcccccchHHH
Q 005798 125 APYEDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAK 203 (676)
Q Consensus 125 ~~~~~~~~~~~~~D~~A~~lA~~l~Ad~li~lTdVdGVy~~dP~-~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K 203 (676)
.-....++|+|++|+++|.+|+||.|+|||||||||++||+ +|++++|++++++|+.++.. .+.++|.||
T Consensus 201 ---~~~~l~rg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dP~~~~~a~~i~~is~~e~~~l~~------~g~~~m~~~ 271 (473)
T 3c1m_A 201 ---YITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAY------FGAKVLHPR 271 (473)
T ss_dssp ---CEEECCTTTHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHHHH------TTCTTSCGG
T ss_pred ---CEEEeCCCChHHHHHHHHHHcCCCEEEEeeCCCcceeCCCCCCCCCeEecccCHHHHHHHHh------cCCcchHHH
Confidence 00011247999999999999999999999999999999995 89999999999999987654 346889996
Q ss_pred HHHHHHHHHcCCcEEEEeCCCcchHHHHHhCCceeeEEecC
Q 005798 204 VNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 244 (676)
Q Consensus 204 ~~aa~~a~~~gv~v~I~~g~~~~~i~~~~tg~~iGT~i~~~ 244 (676)
++..|.++|++++|+|++.|+ ..||++.+.
T Consensus 272 --a~~~a~~~gi~v~I~~~~~~~---------~~GT~i~~~ 301 (473)
T 3c1m_A 272 --TIEPAMEKGIPILVKNTFEPE---------SEGTLITND 301 (473)
T ss_dssp --GHHHHHHHTCCEEEEETTSTT---------SCCEEEESC
T ss_pred --HHHHHHHcCCEEEEEecCCCC---------CceEEEecc
Confidence 889999999999999998875 469999865
No 95
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=99.76 E-value=1.1e-18 Score=190.72 Aligned_cols=170 Identities=16% Similarity=0.139 Sum_probs=130.3
Q ss_pred hhHHHhccHHHHHHHHHHHhhhCCCccceEEecccccCchhHhhhHHHHHHHHHhCCCeeEEcCCCceecCCCCCCCCCc
Q 005798 53 GKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSG 132 (676)
Q Consensus 53 ~~~~~avG~~~~~~~~~~~l~~~g~~~~q~l~~~~d~~~~~~~~~~~~~i~~ll~~g~iPVi~~~d~v~~~~~~~~~~~~ 132 (676)
.+.+.+.|+..+..+++.+|....+++.|++++.++ ..+....+ .+.+..+|+.|.|||++|.-+.... +.-...
T Consensus 109 ~D~lls~GE~lS~~lla~~l~a~~~~~~~~~~~~~~-~~~~~~~~-~~~l~~~l~~~~v~Vv~Gf~g~~~~---g~~~tl 183 (446)
T 3tvi_A 109 SDYAASRGEYLNGVILAKYLNAEFIDAAEVIFFDKS-GCFDEKKS-YEKIKEKVLSCNKAVIPGFYGSSFN---GDVKTF 183 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECCGGGTCBBCC---CBCHHHH-HHHHHHHTTTCSSEECCCSEEECTT---SCEEEC
T ss_pred HHHHHHhHHHHHHHHHHHHhcceeECHHHheeeCCC-CceehHhh-HHHHHHHHhcCCeEEeeCceecCCC---CCeEEE
Confidence 568899999999999999999888888888776541 11122233 6789999999999999762111110 000012
Q ss_pred eecchhHHHHHHHHHcCCCeEeeccccCccccCCCC-CCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHH
Q 005798 133 IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAA 211 (676)
Q Consensus 133 ~~~~~D~~A~~lA~~l~Ad~li~lTdVdGVy~~dP~-~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~ 211 (676)
.++++|++|+++|.+|+||.|+|||||||||++||+ +|++++|++++|+|+.++.. .+.++| |.+++..|.
T Consensus 184 ~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i~~is~~e~~ela~------~Ga~vl--~~~a~~~a~ 255 (446)
T 3tvi_A 184 SRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISKISYKELRELSY------MGATVL--HEEAIFPVK 255 (446)
T ss_dssp SSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHTTT------C----C--CSTTTHHHH
T ss_pred ccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEcceeCHHHHHHHHh------CCCCcc--hHHHHHHHH
Confidence 347899999999999999999999999999999995 99999999999999987543 345666 557999999
Q ss_pred HcCCcEEEEeCCCcchHHHHHhCCceeeEEecC
Q 005798 212 CAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 244 (676)
Q Consensus 212 ~~gv~v~I~~g~~~~~i~~~~tg~~iGT~i~~~ 244 (676)
++|||++|.|+++|+ ..||+|...
T Consensus 256 ~~~ipi~i~~~~~p~---------~~GT~i~~~ 279 (446)
T 3tvi_A 256 DSGIPINIKNTNKPS---------DPGTLILSD 279 (446)
T ss_dssp HSSCCEEEEETTBTT---------SCCEEEECT
T ss_pred HcCCeEEEecCCCCC---------CCCEEEecC
Confidence 999999999998874 369999876
No 96
>4gic_A HDH, histidinol dehydrogenase; protein structure initiative, STR genomics, PSI-biology, NEW YORK structural genomics researc consortium; 2.05A {Methylococcus capsulatus}
Probab=97.20 E-value=0.32 Score=51.54 Aligned_cols=284 Identities=14% Similarity=0.115 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHhcccccccccccccccCCCcEEEEEeeceeEEEEEcCC----ChhhHHHHHHHHHHhCCE--EEEeCC
Q 005798 324 KISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES----RPDALVQIASLAIRSGNG--LLLKGG 397 (676)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~----~P~~~~~~~~~ALaaGN~--vVlKps 397 (676)
-++.+.+.++.+.+...+..... ...+|.....++.|+--|++..|- +|...++.+.||-.||+. |+.-|.
T Consensus 93 ai~~A~~~I~~fh~~Q~~~~~~~---~~~~G~~~g~~~~Pi~~VGlYVPGG~A~ypSsvLM~aiPAkVAGV~~Iv~~tPp 169 (423)
T 4gic_A 93 ALREAAERIRAYAERQKLDSWDY---READGTLLGQKITPLDRVGLYVPGGKAAYPSSVLMNAVPAKVAGVPELIMAVPA 169 (423)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEE---ECTTSCEEEEEEEECSEEEEECCCSTTCCHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHHHHHHHHHHhcccCCccc---ccCCCCEEEEEEEEecceeEEeeCCCCchhhHHHHhhccHHHhCCCeEEEecCC
Confidence 45556666666653222211111 113466677788999999999992 576667778899999986 445555
Q ss_pred cc---hHHHHHHHHHHHHHhcccccCcCceEEec-CCChhhhhhc----CCCCccEEEeecCHHHHHHHHHhcCCCEEee
Q 005798 398 KE---AMRSNAILHKVITSAIPDTVGEKLIGLVT-SREEIPDLLK----LDDVIDLVIPRGSNKLVSQIKESTKIPVLGH 469 (676)
Q Consensus 398 ~~---tp~t~~~l~~l~~~al~~alP~gv~~~v~-~~~~~~~~l~----~~~~v~~v~fTGS~~~g~~i~~~a~~~~~lE 469 (676)
+. .|.+ +..++++ |+=.+.. |+...-.+|. +=|.||+|+=-|..-|...=.+-.+.--+=-
T Consensus 170 ~~G~i~p~i-L~AA~l~----------Gv~eIy~vGGAQAIAAlAyGTetI~~VDkIvGPGN~yVa~AKr~v~g~VgIDm 238 (423)
T 4gic_A 170 PRGELNALV-LAAAYIS----------GVDRVFRIGGAQAVAALAYGTETVPRVDKIVGPGNIYVATAKKLVFGQVGIDM 238 (423)
T ss_dssp GGGCCCHHH-HHHHHHH----------TCCEEECCCHHHHHHHHHHCCSSSCCCSEEECCCCHHHHHHHHHHBTTBEECC
T ss_pred CCCCccHHH-HHHHHhc----------CCcEEEEcCChhhhhhhccCCCcccceeEEecCCcHHHHHHHHHhcCCcCccc
Confidence 42 2333 2223332 5555665 6543322322 2468999998888755322111122111111
Q ss_pred cCCcce--EEEcCCCCHHHHHHHHHHhcCCCCccccccceEEEeCccCChhHHHHHHHHHHhcCcEEecCccccccccCC
Q 005798 470 ADGICH--VYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQIP 547 (676)
Q Consensus 470 lGGk~p--~iV~~dADl~~A~~~iv~~~~~n~g~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~~~g~~~~~~~~pv~ 547 (676)
.-|-+= +|-|++||.+..+..++.-+=.... ..-++|..+ ++|.+++.++++++-. .-++
T Consensus 239 ~AGPSEilViAD~~a~p~~vAaDLlsQAEHd~~----a~~iLvT~s---~~la~~V~~~i~~~l~---~l~r-------- 300 (423)
T 4gic_A 239 VAGPSEILVISDGRTDPDWIAMDLFSQAEHDED----AQAILISPD---AAHLEAVQASIERLLP---GMER-------- 300 (423)
T ss_dssp CCCCCEEEEEECSCSCHHHHHHHHHHHHTTCTT----CEEEEEESC---HHHHHHHHHHHHHHGG---GCTT--------
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhhccCCC----CeEEEEeCc---HHHHHHHHHHHHHHHh---hCcc--------
Confidence 123222 4446679999988888876544322 112566544 3566666666654200 0011
Q ss_pred CCCcccccccCceEEEEEeCCHHHHHHHHHccCCCceeEEEecCHHHHHHHHhccC-eeeEEEcCCCCC--CC-----CC
Q 005798 548 ETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVD-SAAVFHNASTRF--CD-----GA 619 (676)
Q Consensus 548 ~~~~~~eE~FGPVl~i~~~~~~deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~l~-~G~v~iN~~~~~--~~-----~~ 619 (676)
..+.++ -+.---.|+.++|++||++++|..--= -.-|.++|.. .+..+++ +|.|++-..+.. .+ +.
T Consensus 301 -~~i~~~-sl~~~g~ii~v~~~~ea~~~~N~~APE-HLel~~~~~~---~~l~~i~nAGaIFlG~~tp~~~GDY~aG~NH 374 (423)
T 4gic_A 301 -AEVIRT-SLERRGGMILVDDLEQAAAVANRIAPE-HLELSVESPE---VLVESIRNAGAIFMGRYTAEALGDYCAGPNH 374 (423)
T ss_dssp -HHHHHH-HHHHHCEEEECSSHHHHHHHHHHHCCS-EEEEESSCHH---HHGGGCCCCSEEEEC----------------
T ss_pred -HHHHHH-HHhcCceEEEEeehHHHHHHHHhhChH-HhhhhhCCHH---HHHhhCcEeceeecCCCCchhhhhcCcCCCc
Confidence 011111 111112466789999999999997633 4578899975 4666665 999999764421 11 11
Q ss_pred cccCcccccccccccccccccchhcceeEEEEE
Q 005798 620 RFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 652 (676)
Q Consensus 620 pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~ 652 (676)
-++. +|.. +..+..+++.|...-++.
T Consensus 375 vLPT---~G~A----r~~sgLsv~~F~K~~s~~ 400 (423)
T 4gic_A 375 VLPT---SGTA----RFSSPLGVYDFQKRSSLI 400 (423)
T ss_dssp CCCC---TTGG----GTCCCCCGGGGEEEEEEE
T ss_pred cCCC---CCcc----cccCCCCHHHeeeeeeEE
Confidence 1111 1221 234667888898876653
No 97
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domai L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A* 1kar_A
Probab=96.03 E-value=2 Score=45.63 Aligned_cols=284 Identities=11% Similarity=0.103 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHhcccccccccccccccCCCcEEEEEeeceeEEEEEcCC----ChhhHHHHHHHHHHhCCE--EEEeCC
Q 005798 324 KISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES----RPDALVQIASLAIRSGNG--LLLKGG 397 (676)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~----~P~~~~~~~~~ALaaGN~--vVlKps 397 (676)
-++.+.++++.+.+...+...... ..+|...-.++.|+--|++..|. +|...++.+.||-.||+. |+.-|.
T Consensus 87 ai~~A~~nI~~fH~~Q~~~~~~~~---~~~Gv~~gq~~~Pi~rvGlYVPGG~a~ypSsvLM~aiPAkVAGV~~Iv~~tPp 163 (434)
T 1kae_A 87 AMAVAVKNIETFHTAQKLPPVDVE---TQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPP 163 (434)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEE---EETTEEEEEEEEECSEEEEECCCSSSCCTHHHHHHHHHHHHHTCSEEEEEECS
T ss_pred HHHHHHHHHHHHHHHhcCCCceEE---ecCCcEEEEEEeehheEEEEecCCCCCchhHHHHhhccHhhcCCCeEEEECCC
Confidence 455566666666432222110111 12366677788999999999993 576667777899999986 444454
Q ss_pred cchHHHHHHHHHHHHHhcccccCcCceEEec-CCChhhhhhc----CCCCccEEEeecCHHH--HHHHHH-hcCCCEEee
Q 005798 398 KEAMRSNAILHKVITSAIPDTVGEKLIGLVT-SREEIPDLLK----LDDVIDLVIPRGSNKL--VSQIKE-STKIPVLGH 469 (676)
Q Consensus 398 ~~tp~t~~~l~~l~~~al~~alP~gv~~~v~-~~~~~~~~l~----~~~~v~~v~fTGS~~~--g~~i~~-~a~~~~~lE 469 (676)
.-.|.+- ..++++ |+=.+.. |+...-.+|. +=|+||+|+=-|..-| +|+..+ ..+.--+=-
T Consensus 164 ~i~p~iL-~AA~l~----------Gv~eIy~vGGAQAIAAlAyGTetIp~VDkI~GPGN~yVa~AKr~Vs~~~G~VgIDm 232 (434)
T 1kae_A 164 PIADEIL-YAAQLC----------GVQDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDM 232 (434)
T ss_dssp SCCHHHH-HHHHHT----------TCCEEEECCHHHHHHHHHHCCSSSCCCSEEECCCCHHHHHHHHHHHHCTTSCEESC
T ss_pred CCCHHHH-HHHHHc----------CCCEEeecccHHHHHHHHcCCCCCCCccEEECCCcHHHHHHHHHhHhhcCccccCC
Confidence 3445432 222332 4555555 5543222222 3478999988887644 444431 122111111
Q ss_pred cCCcce--EEEcCCCCHHHHHHHHHHhcCCCCccccccceEEEeCccCChhHHHHHHHHHHhcCcEEecCccccccccCC
Q 005798 470 ADGICH--VYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQIP 547 (676)
Q Consensus 470 lGGk~p--~iV~~dADl~~A~~~iv~~~~~n~g~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~~~g~~~~~~~~pv~ 547 (676)
.-|-+= +|-|++||.+..+..++.-+=.... ..-++|..| ++|.+++.++++++-..+ ++
T Consensus 233 ~AGPSEilViAD~tAnp~~vAaDLLsQAEHd~~----a~aiLvT~s---~~la~~V~~ev~~ql~~l---pr-------- 294 (434)
T 1kae_A 233 PAGPSEVLVIADSGATPDFVASDLLSQAEHGPD----SQVILLTPA---ADMARRVAEAVERQLAEL---PR-------- 294 (434)
T ss_dssp CCCCCEEEEEECTTSCHHHHHHHHHHHHTTCTT----CEEEEEESC---HHHHHHHHHHHHHHHTTC---TT--------
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHhccCCC----CcEEEEECC---HHHHHHHHHHHHHHHHhC---Ch--------
Confidence 113222 4446679999988888766544322 122455444 356666665555420000 11
Q ss_pred CCCcccccccCceEEEEEeCCHHHHHHHHHccCCCceeEEEecCHHHHHHHHhc-cCeeeEEEcCCCCC-------CCCC
Q 005798 548 ETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQ-VDSAAVFHNASTRF-------CDGA 619 (676)
Q Consensus 548 ~~~~~~eE~FGPVl~i~~~~~~deAi~~aN~~~~GL~a~vft~d~~~a~~~~~~-l~~G~v~iN~~~~~-------~~~~ 619 (676)
..+. ++-+..- .|+-++|+|||++++|..--= -.-|.++|... +..+ -.+|.|++-..+.- +++.
T Consensus 295 -~~ia-~~sl~~~-~ii~v~~l~ea~~~~N~~APE-HLel~~~dp~~---~l~~I~nAGaIFlG~~tpe~~GDY~aG~NH 367 (434)
T 1kae_A 295 -AETA-RQALNAS-RLIVTKDLAQCVEISNQYGPE-HLIIQTRNARE---LVDSITSAGSVFLGDWSPESAGDYASGTNH 367 (434)
T ss_dssp -HHHH-HHHHTTC-EEEECSSHHHHHHHHHHHCCS-EEEEESTTHHH---HGGGCCSCSEEEESTTCCHHHHHHTSSSCC
T ss_pred -HHHH-HHHHHcC-eEEEECCHHHHHHHHHHhhhH-hhhhhhcCHHH---HHhhcCcccchhcCCCCchhhcccccCCCc
Confidence 0111 2223344 688899999999999997633 45789999854 4444 56899999876531 1111
Q ss_pred cccCcccccccccccccccccchhcceeEEEEEE
Q 005798 620 RFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 653 (676)
Q Consensus 620 pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~ 653 (676)
-++. +|.. +..|..+++.|...-++..
T Consensus 368 vLPT---~G~A----R~~sgLsV~~F~K~~s~~~ 394 (434)
T 1kae_A 368 VLPT---YGYT----ATCSSLGLADFQKRMTVQE 394 (434)
T ss_dssp CCCC---TTGG----GTCCCSCGGGGEEEEEEEE
T ss_pred ccCC---CCce----eccCCCcHHhccceeeEEE
Confidence 1221 1222 2346678889988766543
No 98
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=45.88 E-value=42 Score=27.81 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=41.4
Q ss_pred ccccceEEEeCccCC----hhHHHHHHHHHHhcCcEEe--cCccccccccCCCCCcccccccCceEEEEEeCCHHHHHHH
Q 005798 502 CNAMETLLVHKDLAC----NGALNELVVELQHEGVGLF--GGPRASKLLQIPETRLFHHEYNSMVCTVEIVDDVRAAIDH 575 (676)
Q Consensus 502 C~a~~rv~V~~~i~d----~~f~~~l~~~~~~~~~~~~--g~~~~~~~~pv~~~~~~~eE~FGPVl~i~~~~~~deAi~~ 575 (676)
|+..-+++++-++.| +++.+.....+++.|.+++ |+... +...+. .|-+.|+.|+|.+.|.+.
T Consensus 2 ~M~~~Y~I~~~~v~d~e~y~~Y~~~~~~~~~~~gGr~l~~g~~~~----------~~eG~~-~~~~viieFpS~~aa~~~ 70 (99)
T 2fiu_A 2 HMAKGYWIAQVDVRDSERYKDYVSTAKPAFERFGANFLARGGSVT----------ELEGTA-RARNVVIEFPSVQHAIDC 70 (99)
T ss_dssp -CCCEEEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEESCCEE----------EEESCC-CSEEEEEEESSHHHHHHH
T ss_pred CCCcEEEEEEEEeCCHHHHHHHHHHHHHHHHHcCcEEEEECCCce----------EEecCC-cCeEEEEECCCHHHHHHH
Confidence 344445555555543 3555555666677776654 32210 111111 348889999999999999
Q ss_pred HHccCC
Q 005798 576 IHQHGS 581 (676)
Q Consensus 576 aN~~~~ 581 (676)
.|+-+|
T Consensus 71 ~~s~~Y 76 (99)
T 2fiu_A 71 YNSPEY 76 (99)
T ss_dssp HHSHHH
T ss_pred HcCHHH
Confidence 998766
No 99
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=29.97 E-value=1.1e+02 Score=22.93 Aligned_cols=37 Identities=5% Similarity=0.095 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHH
Q 005798 259 VAARESSRRLQALQSQDRRKILLDVADALEANESLIK 295 (676)
Q Consensus 259 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~ 295 (676)
+.++..-..|..+|.++|..+.......-++...++.
T Consensus 28 ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~ 64 (67)
T 3fgh_A 28 EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMK 64 (67)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667789999999999998777666665555543
No 100
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=28.44 E-value=2.3e+02 Score=27.47 Aligned_cols=79 Identities=16% Similarity=0.128 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCcEEEEeCCCc--------chHHHHHhCCceeeEEecCCccccchhhHHHHHHHH-HHH-----HH---
Q 005798 204 VNAAYCAACAGIPVVITSGFAM--------DSIIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAA-RES-----SR--- 266 (676)
Q Consensus 204 ~~aa~~a~~~gv~v~I~~g~~~--------~~i~~~~tg~~iGT~i~~~~~~~~~~~~v~~av~~A-~~A-----~~--- 266 (676)
+++|..|.+.||.++.+.-... ..|.++.. ..-|+++... .+++.+.++.. +++ +.
T Consensus 28 ~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~-~tGG~yf~a~------~~~l~~~~~~~t~~~~~~t~q~~v~ 100 (242)
T 3rag_A 28 VEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIAD-AGGGMCRIVQ------PADISATAQMMTHQTMQMTLQQVVN 100 (242)
T ss_dssp HHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHH-HTTSCEEEEC------GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHH-hcCCeEEEee------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889999999877764221 23444432 1226677666 34544433221 222 11
Q ss_pred ---------HHhcCCHHHHHHHHHHHHHHHHH
Q 005798 267 ---------RLQALQSQDRRKILLDVADALEA 289 (676)
Q Consensus 267 ---------~w~~~~~~~R~~~L~~~a~~l~~ 289 (676)
....++++.|.++++-+.++.+.
T Consensus 101 ~~~~~i~g~~~~~l~p~~r~~~~~~~~~l~e~ 132 (242)
T 3rag_A 101 QELLAVMGKSTEDLPPADRARVMQVVEKLEDE 132 (242)
T ss_dssp HHHHHHSSCCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccCCcchhcchhhhhhhhccc
Confidence 24568999999888766554443
No 101
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.90 E-value=1.5e+02 Score=23.39 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcHHHHH
Q 005798 260 AARESSRRLQALQSQDRRKILLDVADALEANESLIK 295 (676)
Q Consensus 260 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~ 295 (676)
.++..-..|+.+|.++|..+.......-+++..++.
T Consensus 48 isk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~ 83 (86)
T 2eqz_A 48 FSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMK 83 (86)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666789999999999998777776666655543
No 102
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Probab=22.72 E-value=99 Score=29.83 Aligned_cols=70 Identities=6% Similarity=0.069 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHH
Q 005798 379 VQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQI 458 (676)
Q Consensus 379 ~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~l~~~al~~alP~gv~~~v~~~~~~~~~l~~~~~v~~v~fTGS~~~g~~i 458 (676)
+..++..+..||=||++.+.. .....+..++.. -+|.|++++++-.++- .+.-+-+.+.++.+..+=..+
T Consensus 21 F~~l~~~vl~GnQiIVrg~~~--~~~~s~~~~L~~----lLP~~c~~l~~~s~~Y----~~~~~cnilgls~~v~iP~~v 90 (226)
T 3v42_A 21 FRMLAWHVLMGNQVIWKSRDV--DLVQSAFEVLRT----MLPVGCVRIIPYSSQY----EEAYRCNFLGLSPHVQIPPHV 90 (226)
T ss_dssp HHHHHHHHHHTCEEEEECSCH--HHHHHHHHHHGG----GSCGGGCCEEEEESSC----CCTTTCSEEEECTTCCCCHHH
T ss_pred HHHHHHHHhcCCEEEEEcCCH--HHHHHHHHHHHH----hCCHHHHhccccchhh----cchhheeeecCCCCcccCccc
Confidence 466788899999999999763 333334455542 2999999999632221 122346777777776555544
No 103
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=22.25 E-value=98 Score=28.07 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=32.1
Q ss_pred eeccccCccccCCCC--CCCCceeceeehhchHHHHhcCCCCcccccchHHHHHHHHHHHHcCCcEEEEeCCCcchHHHH
Q 005798 154 VLLSDVEGLYSGPPS--EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKV 231 (676)
Q Consensus 154 i~lTdVdGVy~~dP~--~~~a~~i~~i~~~e~~~~~~~g~~~~~~~ggM~~K~~aa~~a~~~gv~v~I~~g~~~~~i~~~ 231 (676)
++++|+||++++.-. .++++.+..++..+. .+.....+.|+++.|++++ ......
T Consensus 11 liv~D~DGtL~d~~~~~~~~g~~~~~f~~~D~---------------------~~L~~Lk~~Gi~~~I~Tg~--~~~~~~ 67 (168)
T 3ewi_A 11 LLVCNIDGCLTNGHIYVSGDQKEIISYDVKDA---------------------IGISLLKKSGIEVRLISER--ACSKQT 67 (168)
T ss_dssp EEEEECCCCCSCSCCBCCSSCCCEEEEEHHHH---------------------HHHHHHHHTTCEEEEECSS--CCCHHH
T ss_pred EEEEeCccceECCcEEEcCCCCEEEEEecCcH---------------------HHHHHHHHCCCEEEEEeCc--HHHHHH
Confidence 577899999987421 233333333332111 2334555679998888887 333444
Q ss_pred Hh
Q 005798 232 LE 233 (676)
Q Consensus 232 ~t 233 (676)
+.
T Consensus 68 l~ 69 (168)
T 3ewi_A 68 LS 69 (168)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 104
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.28 E-value=21 Score=33.19 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=39.6
Q ss_pred ccccCceEEEEEeCCHHHHHHHH----HccCCCceeEEEecCHHHHHHHHhcc
Q 005798 554 HEYNSMVCTVEIVDDVRAAIDHI----HQHGSAHTDCIVAEDQKVAETFLCQV 602 (676)
Q Consensus 554 eE~FGPVl~i~~~~~~deAi~~a----N~~~~GL~a~vft~d~~~a~~~~~~l 602 (676)
||-||+..|..--.+++||++.| .....-|-.++++.+-..+..|.+++
T Consensus 25 ~~~yg~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~ 77 (178)
T 2ec4_A 25 SSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQM 77 (178)
T ss_dssp HHHHCSCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHT
T ss_pred HHHhCCCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHh
Confidence 56678877777678999999999 88888999999998876667776543
Done!