Query 005799
Match_columns 676
No_of_seqs 344 out of 831
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 07:43:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 1.6E-28 5.5E-33 227.5 13.9 114 105-218 6-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 1.2E-17 4.3E-22 157.7 11.6 98 109-216 45-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.6 9.4E-15 3.2E-19 129.7 10.5 94 110-214 8-101 (104)
4 1vd2_A Protein kinase C, IOTA 95.0 0.072 2.5E-06 46.6 7.9 65 595-664 8-72 (89)
5 1wmh_B Partitioning defective- 94.9 0.082 2.8E-06 46.1 7.9 70 594-667 7-76 (86)
6 1na6_A Ecorii, restriction end 93.1 0.098 3.4E-06 56.7 5.8 92 110-202 18-123 (404)
7 2kkc_A Sequestosome-1; P62, PB 89.7 0.84 2.9E-05 40.9 7.2 49 615-667 42-91 (102)
8 2ktr_A Sequestosome-1; autopha 89.3 0.95 3.2E-05 41.5 7.5 73 591-667 18-106 (117)
9 1q1o_A Cell division control p 86.7 0.77 2.6E-05 40.9 5.0 70 595-664 7-86 (98)
10 1pqs_A Cell division control p 75.3 2.1 7.2E-05 36.4 3.5 54 611-664 8-65 (77)
11 1oey_J P40-PHOX, neutrophil cy 74.8 7.5 0.00026 35.0 7.0 52 610-667 28-79 (107)
12 1oey_A P67-PHOX, neutrophil cy 74.4 6.5 0.00022 34.0 6.3 63 595-662 7-70 (83)
13 2bkf_A Zinc-finger protein NBR 73.0 8.3 0.00028 33.7 6.7 67 595-665 8-75 (87)
14 1wj6_A KIAA0049 protein, RSGI 70.2 8.9 0.0003 34.4 6.3 60 595-660 16-75 (101)
15 3o27_A Putative uncharacterize 48.3 23 0.00079 29.6 4.7 35 183-217 31-66 (68)
16 2jng_A Cullin-7, CUL-7; P53 bi 41.3 27 0.00091 31.5 4.3 69 317-399 10-78 (105)
17 3p8d_A Medulloblastoma antigen 34.5 41 0.0014 27.9 4.2 41 325-380 3-43 (67)
18 3s6w_A Tudor domain-containing 32.8 39 0.0013 25.9 3.6 28 328-359 1-28 (54)
19 1mhn_A SurviVal motor neuron p 31.9 41 0.0014 26.4 3.7 29 327-359 2-30 (59)
20 4a4f_A SurviVal of motor neuro 28.6 48 0.0016 26.5 3.6 30 326-359 6-35 (64)
21 1e8p_A Endoglucanase, dockerin 27.1 18 0.00061 28.2 0.7 13 638-650 20-32 (46)
22 3m7a_A Uncharacterized protein 25.2 68 0.0023 29.9 4.4 46 151-199 84-140 (140)
23 3qii_A PHD finger protein 20; 24.5 72 0.0025 27.7 4.1 40 326-380 19-58 (85)
24 2vb2_X Copper protein, cation 24.1 78 0.0027 27.1 4.3 26 188-213 59-86 (88)
25 2k75_A Uncharacterized protein 23.7 1.9E+02 0.0065 25.1 6.9 47 150-216 39-89 (106)
26 2equ_A PHD finger protein 20-l 23.6 63 0.0022 27.0 3.5 39 327-380 8-46 (74)
27 2e63_A KIAA1787 protein; struc 23.0 46 0.0016 31.8 3.0 26 188-213 115-140 (170)
28 2qcp_X Cation efflux system pr 22.8 90 0.0031 26.2 4.4 26 188-213 51-78 (80)
29 1g5v_A SurviVal motor neuron p 20.9 80 0.0028 27.2 3.7 30 326-359 8-37 (88)
30 3h8z_A FragIle X mental retard 20.5 1.1E+02 0.0038 28.2 4.8 60 298-358 27-90 (128)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=1.6e-28 Score=227.47 Aligned_cols=114 Identities=31% Similarity=0.501 Sum_probs=104.1
Q ss_pred CCCCcccEEEEecccccCCCCCceEeccccccccCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCcceeccchhH
Q 005799 105 SESEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWST 184 (676)
Q Consensus 105 ~~~~~~~~F~K~LT~SDv~~~grlsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~iyr~~~rr~lLTtGWs~ 184 (676)
...++.++|.|+||+|||+++++|+||+++|+.|||.++..+.++.++|.++|.+|++|+|+|+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 34556689999999999999999999999999999999987667789999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCEEEEEEecC--CcEEEEEEEcccCC
Q 005799 185 FVNQKKLVAGDSIVFLRAQD--GDLCVGIRRAKKGI 218 (676)
Q Consensus 185 FV~~K~L~aGD~VVF~R~~n--GeL~VGIRR~~~~~ 218 (676)
||++|+|++||+|+|++.++ +.|+|++||+....
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 99999999999999999874 57999999998744
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.73 E-value=1.2e-17 Score=157.68 Aligned_cols=98 Identities=22% Similarity=0.308 Sum_probs=86.9
Q ss_pred cccEEEEecccccCCCCCceEeccccccccCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCcceeccchhHHhhh
Q 005799 109 KPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQ 188 (676)
Q Consensus 109 ~~~~F~K~LT~SDv~~~grlsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~iyr~~~rr~lLTtGWs~FV~~ 188 (676)
..++|.|+||+||+.++.+|.||+++++.+||..+ +.+.+.|. |+.|.|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence 34799999999999987789999999999999763 47888888 6999999999974 78999999999999
Q ss_pred cCCCCCCEEEEEEecCC--cEEEEEEEccc
Q 005799 189 KKLVAGDSIVFLRAQDG--DLCVGIRRAKK 216 (676)
Q Consensus 189 K~L~aGD~VVF~R~~nG--eL~VGIRR~~~ 216 (676)
++|++||+|+|...++. .+.|.|.|+..
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred cCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 99999999999998765 68999998764
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.56 E-value=9.4e-15 Score=129.73 Aligned_cols=94 Identities=26% Similarity=0.414 Sum_probs=82.0
Q ss_pred ccEEEEecccccCCCCCceEeccccccccCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCcceeccchhHHhhhc
Q 005799 110 PASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQK 189 (676)
Q Consensus 110 ~~~F~K~LT~SDv~~~grlsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~iyr~~~rr~lLTtGWs~FV~~K 189 (676)
.+.|.|+|+++|.. .+|.||+++++.+.+.+. ..+.++|..|++|++++.+++ .+..|++||.+||+++
T Consensus 8 ~p~F~K~l~~~~~~--~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKSS--KSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHHT--TCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCcc--ceEECCHHHHHhcCccCC-------CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 36899999999944 489999999988655442 478999999999999999873 5789999999999999
Q ss_pred CCCCCCEEEEEEecCCcEEEEEEEc
Q 005799 190 KLVAGDSIVFLRAQDGDLCVGIRRA 214 (676)
Q Consensus 190 ~L~aGD~VVF~R~~nGeL~VGIRR~ 214 (676)
+|++||.|+|...++..+.|-|-+.
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCCEEEEEEcCCCeEEEEEECC
Confidence 9999999999999999999998774
No 4
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=95.02 E-value=0.072 Score=46.65 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=48.3
Q ss_pred eEEEEecccceeeeccCCCCCCHHHHHHHHHHhhCCCccCceeeEEEEcCCCCeEecCCcchhhHHHhhh
Q 005799 595 HCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFRYHLLVFA 664 (676)
Q Consensus 595 ~~KV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D~eGd~mlvGD~Pw~~F~~~v~ 664 (676)
.+|++.+|.-+-=.++. --+|++|+++|.++|.+.. +-..+|-|.|.|||+.-+-.+ .+.-..++
T Consensus 8 kvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~~-~~~f~lky~DEeGD~itisSd--~EL~eAl~ 72 (89)
T 1vd2_A 8 RVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFDN-EQLFTMKWIDEEGDPCTVSSQ--LELEEAFR 72 (89)
T ss_dssp EEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCCS-SCCEEEEECCSSSCCEECCSH--HHHHHHHH
T ss_pred EEEEEeCCeEEEEECCC--CCCHHHHHHHHHHHhCCCC-CCeEEEEEECCCCCcccccCH--HHHHHHHH
Confidence 67999999644334454 4599999999999999864 233589999999999888766 55544443
No 5
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=94.91 E-value=0.082 Score=46.12 Aligned_cols=70 Identities=19% Similarity=0.139 Sum_probs=55.8
Q ss_pred ceEEEEecccceeeeccCCCCCCHHHHHHHHHHhhCCCccCceeeEEEEcCCCCeEecCCcchhhHHHhhhhcc
Q 005799 594 GHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFRYHLLVFACHL 667 (676)
Q Consensus 594 ~~~KV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D~eGd~mlvGD~Pw~~F~~~v~~~~ 667 (676)
-.||..-+++--==.+|-+...+|++|+..|+.+|.+.. ....+.|+|.+||.+-+-++ ++|.+.+...+
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~--~~f~i~Y~D~dGDLlpInnD--dnl~~Al~~a~ 76 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPG--LDVLLGYTDAHGDLLPLTND--DSLHRALASGP 76 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTT--CCCEEEEECTTSCEEECCSH--HHHHHHTTSSS
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCC--CCEEEEEECCCCCEeeecCH--HHHHHHHHhCC
Confidence 356888877533336777778899999999999999854 44689999999999999999 89987776543
No 6
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=93.08 E-value=0.098 Score=56.67 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=67.6
Q ss_pred ccEEEEecccccCCCC----CceEeccccccccCCCCC-CCCCCCceEEEEE--eCCCCeEEEEEEEeC------CCCcc
Q 005799 110 PASFAKTLTQSDANNG----GGFSVPRYCAETIFPRLD-YTADPPVQTVVAK--DVHGEIWKFRHIYRG------TPRRH 176 (676)
Q Consensus 110 ~~~F~K~LT~SDv~~~----grlsVPk~~Ae~~FP~Ld-~~~~~p~q~L~~~--D~~G~~W~Fr~iyr~------~~rr~ 176 (676)
-..|+|.|++.|++.. .++.+|+..+..+||.|+ .....|.+.+.+. |...-++.++.+|.+ +...|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 3789999999999855 379999988999999998 3344566666543 444455599999997 44668
Q ss_pred eeccch-hHHhhhcCCCCCCEEEEEEe
Q 005799 177 LLTTGW-STFVNQKKLVAGDSIVFLRA 202 (676)
Q Consensus 177 lLTtGW-s~FV~~K~L~aGD~VVF~R~ 202 (676)
.||. | ..+.-.....+||.++|-+.
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEee-cCCCCcccccCCCCCEEEEEEe
Confidence 8872 2 23455577789999998754
No 7
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=89.67 E-value=0.84 Score=40.85 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHhhC-CCccCceeeEEEEcCCCCeEecCCcchhhHHHhhhhcc
Q 005799 615 SSYEELYRRLAIMFG-IERSDMLSHVLYQDASGAIKRTGDEPFRYHLLVFACHL 667 (676)
Q Consensus 615 ~sY~eL~~~L~~MF~-i~~~~l~~~v~Y~D~eGd~mlvGD~Pw~~F~~~v~~~~ 667 (676)
.+|++|+..+.++|. +.+ -...|.|+|.|||+.-+.++ +++...+....
T Consensus 42 ~s~~~L~~~V~~lFp~l~~--~~f~l~Y~DedGDlItiSsD--eEL~~Al~~~~ 91 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRP--GGFQAHYRAERGDLVAFSSD--EELTMAMSYVK 91 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCS--SCEEEEEECTTCCEEEECSH--HHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHccccCC--CcEEEEEECCCCCEEEecCH--HHHHHHHHhcC
Confidence 589999999999995 443 24689999999999999988 77766555443
No 8
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=89.34 E-value=0.95 Score=41.52 Aligned_cols=73 Identities=14% Similarity=0.247 Sum_probs=50.4
Q ss_pred CccceEEEEecc-----cceee-eccC---------CCCCCHHHHHHHHHHhh-CCCccCceeeEEEEcCCCCeEecCCc
Q 005799 591 LDTGHCKVFLES-----EDVGR-TLDL---------SVLSSYEELYRRLAIMF-GIERSDMLSHVLYQDASGAIKRTGDE 654 (676)
Q Consensus 591 ~~~~~~KV~meG-----~~vGR-~vDL---------s~~~sY~eL~~~L~~MF-~i~~~~l~~~v~Y~D~eGd~mlvGD~ 654 (676)
...-.+|++..| ..|=| ++|- ....+|++|+.++.++| .+.+. ...|.|+|.|||+.-+-.+
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~--~f~l~YkDEdGDlItISsD 95 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPG--GFQAHYRAERGDLVAFSSD 95 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSS--CEEEEEECTTCCEEEECSH
T ss_pred cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCC--cEEEEEECCCCCEEEecCH
Confidence 334577888874 23333 2331 12469999999999999 56542 3689999999999999888
Q ss_pred chhhHHHhhhhcc
Q 005799 655 PFRYHLLVFACHL 667 (676)
Q Consensus 655 Pw~~F~~~v~~~~ 667 (676)
+++...+....
T Consensus 96 --eEL~~Al~~~~ 106 (117)
T 2ktr_A 96 --EELTMAMSYVK 106 (117)
T ss_dssp --HHHHHHHHHCC
T ss_pred --HHHHHHHHhcC
Confidence 77765555443
No 9
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=86.66 E-value=0.77 Score=40.91 Aligned_cols=70 Identities=13% Similarity=0.255 Sum_probs=49.7
Q ss_pred eEEEEecccc----ee--eeccCCCCCCHHHHHHHHHHhhCCC-ccCc--eeeEEEEcCCCCeEecCCc-chhhHHHhhh
Q 005799 595 HCKVFLESED----VG--RTLDLSVLSSYEELYRRLAIMFGIE-RSDM--LSHVLYQDASGAIKRTGDE-PFRYHLLVFA 664 (676)
Q Consensus 595 ~~KV~meG~~----vG--R~vDLs~~~sY~eL~~~L~~MF~i~-~~~l--~~~v~Y~D~eGd~mlvGD~-Pw~~F~~~v~ 664 (676)
.+||+-++.. ++ |+|=...-=+|++|+.++.+-|++. +.+. ..++-|+|.|||+..++++ =|++=+.+++
T Consensus 7 kVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~~~ 86 (98)
T 1q1o_A 7 LFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 86 (98)
T ss_dssp EEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHHHH
T ss_pred EEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 5677776421 23 6777777788999999999999974 2232 3589999999999877765 4555455553
No 10
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=75.29 E-value=2.1 Score=36.41 Aligned_cols=54 Identities=13% Similarity=0.288 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHhhCCCcc-C--ceeeEEEEcCCCCeEecCCc-chhhHHHhhh
Q 005799 611 LSVLSSYEELYRRLAIMFGIERS-D--MLSHVLYQDASGAIKRTGDE-PFRYHLLVFA 664 (676)
Q Consensus 611 Ls~~~sY~eL~~~L~~MF~i~~~-~--l~~~v~Y~D~eGd~mlvGD~-Pw~~F~~~v~ 664 (676)
...-=+|++|+.++.+-|++..+ + -..++-|+|.|||+..++++ =|++=+.++|
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~ 65 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 65 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 34445799999999999996411 1 12478899999999877654 4555555554
No 11
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=74.76 E-value=7.5 Score=35.01 Aligned_cols=52 Identities=23% Similarity=0.195 Sum_probs=42.0
Q ss_pred cCCCCCCHHHHHHHHHHhhCCCccCceeeEEEEcCCCCeEecCCcchhhHHHhhhhcc
Q 005799 610 DLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFRYHLLVFACHL 667 (676)
Q Consensus 610 DLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D~eGd~mlvGD~Pw~~F~~~v~~~~ 667 (676)
||+..-+|++|.....+-|.-+. -.|=|+|.|||+.-+=|+ ++--=||++.+
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~D----IaLNYrD~eGDLIrildd--eDv~lmi~~sr 79 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRED----IALNYRDAEGDLVRLLSD--EDVALMVRQAR 79 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCSS----EEEEEECTTSCEEECCSH--HHHHHHHHHCC
T ss_pred ccccCCCHHHHHHHHHHHhcccc----eeeeeecCCCCEEEEcch--HHHHHHHHHhh
Confidence 78888999999999999999665 467799999999998887 55555555543
No 12
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=74.36 E-value=6.5 Score=33.96 Aligned_cols=63 Identities=8% Similarity=0.096 Sum_probs=48.8
Q ss_pred eEEEEecccceeeeccCCCCCCHHHHHHHHHHhhCCCccCceeeEEEEc-CCCCeEecCCcchhhHHHh
Q 005799 595 HCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQD-ASGAIKRTGDEPFRYHLLV 662 (676)
Q Consensus 595 ~~KV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D-~eGd~mlvGD~Pw~~F~~~ 662 (676)
-+||+-+ +--+|....=-+|.+|++.|.+-+.+.++. .+|-|+| ++|.+++.+|+=++.=...
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~--~~LsYk~~~s~~~vi~~d~dl~~aw~~ 70 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEH--TKLSYRPRDSNELVPLSEDSMKDAWGQ 70 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGG--CCEEECCTTCSSCEECCTTTHHHHHTT
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcce--eEEEeeCCCCCCeeccChHHHHHHHHh
Confidence 3467766 566777788889999999999999997533 3788999 6888889999877654433
No 13
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=73.05 E-value=8.3 Score=33.70 Aligned_cols=67 Identities=9% Similarity=0.116 Sum_probs=47.7
Q ss_pred eEEEEecccceeeeccCCCCCCHHHHHHHHHHhhCCCccCceeeEEEEcCCCCeEecCCc-chhhHHHhhhh
Q 005799 595 HCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDE-PFRYHLLVFAC 665 (676)
Q Consensus 595 ~~KV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D~eGd~mlvGD~-Pw~~F~~~v~~ 665 (676)
-.||.-.|+..==-|.-..--++++|...+..+|++.. .+|.|.|.|||-.-|--. =+++=+++.+.
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~----~~ikY~DEenD~v~i~Sq~E~eEAlkva~k 75 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT----IQIKYLDEENEEVSINSQGEYEEALKMAVK 75 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS----EEEEEECTTSCEEEECSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCCc----eEEEEEcCCCCEEEEecHHHHHHHHHHhcc
Confidence 35888888643223533446789999999999999986 599999999998876543 33444554443
No 14
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=70.17 E-value=8.9 Score=34.37 Aligned_cols=60 Identities=8% Similarity=0.057 Sum_probs=45.9
Q ss_pred eEEEEecccceeeeccCCCCCCHHHHHHHHHHhhCCCccCceeeEEEEcCCCCeEecCCcchhhHH
Q 005799 595 HCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFRYHL 660 (676)
Q Consensus 595 ~~KV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D~eGd~mlvGD~Pw~~F~ 660 (676)
-.||.-.|+..==-|.-..--++++|...+..+|++.. .+|.|.|.|||-.-|=- ..+|-
T Consensus 16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~----~~IkY~DEenD~V~i~S--q~E~e 75 (101)
T 1wj6_A 16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT----IQIKYLDEENEEVSINS--QGEYE 75 (101)
T ss_dssp EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSS----BCCEEECTTSCEECCCS--HHHHH
T ss_pred EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCc----eEEEEecCCCCEEEEec--HHHHH
Confidence 45899999743323644456789999999999999986 58999999999987754 35553
No 15
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=48.34 E-value=23 Score=29.60 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=30.9
Q ss_pred hHHhhhcCCCCCCEEEEEEec-CCcEEEEEEEcccC
Q 005799 183 STFVNQKKLVAGDSIVFLRAQ-DGDLCVGIRRAKKG 217 (676)
Q Consensus 183 s~FV~~K~L~aGD~VVF~R~~-nGeL~VGIRR~~~~ 217 (676)
.+++++-+|+.||.+...-++ +|++.+..+|-++.
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk~ 66 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKEL 66 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhhc
Confidence 589999999999999998875 88899999997764
No 16
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=41.29 E-value=27 Score=31.48 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=45.5
Q ss_pred ehHHHHHHHhcccccccEEEEEeecCCCCceeeeeeEEEEeecCCCCCCCCCCccccccccCCccccCCCCCcccceeee
Q 005799 317 KASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVEL 396 (676)
Q Consensus 317 ~~~~y~~A~~~~w~~GmRFkM~fE~EDss~~~w~~GTI~gv~~~dp~~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIE~ 396 (676)
+.+.|-.=++.+..||||+||.=.-|+-+.. =.|++. ++ .+- -| ..||.|..... .-.|+-=.||+
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~G--D~G~vl-~s-~~G--l~-----~vQv~W~~~G~---TyWV~~~~~El 75 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEISAG--DEGEFR-QS-NNG--VP-----PVQVFWESTGR---TYWVHWHMLEI 75 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBCTT--CEEEEE-EE-CTT--SS-----EEEEEETTTTE---EEEEEGGGEEE
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhccC--CceeEE-ec-CCC--Cc-----cceeeehhcCc---eEEEEeehhhh
Confidence 5678888899999999999998544444432 257776 33 222 12 78999997652 45555556666
Q ss_pred ccC
Q 005799 397 VSN 399 (676)
Q Consensus 397 v~~ 399 (676)
+..
T Consensus 76 lg~ 78 (105)
T 2jng_A 76 LGF 78 (105)
T ss_dssp CCC
T ss_pred cCC
Confidence 643
No 17
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=34.46 E-value=41 Score=27.91 Aligned_cols=41 Identities=7% Similarity=0.199 Sum_probs=32.2
Q ss_pred HhcccccccEEEEEeecCCCCceeeeeeEEEEeecCCCCCCCCCCccccccccCCc
Q 005799 325 MRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEP 380 (676)
Q Consensus 325 ~~~~w~~GmRFkM~fE~EDss~~~w~~GTI~gv~~~dp~~wp~S~WR~L~V~WDe~ 380 (676)
|-..|.+|+++--++ ++- +||-+||.+|... ....|.+++.
T Consensus 3 ~~~~~~vGd~vmArW-~D~----~yYpA~I~si~~~----------~~Y~V~F~dG 43 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-SDC----RFYPAKVTAVNKD----------GTYTVKFYDG 43 (67)
T ss_dssp --CCCCTTCEEEEEC-TTS----CEEEEEEEEECTT----------SEEEEEETTS
T ss_pred cCcccccCCEEEEEc-CCC----CEeeEEEEEECCC----------CeEEEEEeCC
Confidence 456899999999999 433 6999999999741 4588999983
No 18
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=32.76 E-value=39 Score=25.92 Aligned_cols=28 Identities=7% Similarity=0.302 Sum_probs=22.3
Q ss_pred ccccccEEEEEeecCCCCceeeeeeEEEEeec
Q 005799 328 HWLCGMRFKMAFETEDSSRISWFMGTISSVQV 359 (676)
Q Consensus 328 ~w~~GmRFkM~fE~EDss~~~w~~GTI~gv~~ 359 (676)
.|.+|+..--.|..+. .||.++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg----~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN----KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT----EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC----CEEEEEEEEEeC
Confidence 4999999999995444 799999999863
No 19
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=31.90 E-value=41 Score=26.37 Aligned_cols=29 Identities=17% Similarity=0.436 Sum_probs=23.9
Q ss_pred cccccccEEEEEeecCCCCceeeeeeEEEEeec
Q 005799 327 VHWLCGMRFKMAFETEDSSRISWFMGTISSVQV 359 (676)
Q Consensus 327 ~~w~~GmRFkM~fE~EDss~~~w~~GTI~gv~~ 359 (676)
..|.+|+.+-..|..+. .||.++|.++..
T Consensus 2 ~~~~~G~~c~A~~s~Dg----~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDG----CIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECTTTS----CEEEEEEEEEET
T ss_pred CcCCcCCEEEEEECCCC----CEEEEEEEEEcC
Confidence 47999999999995333 699999999964
No 20
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=28.60 E-value=48 Score=26.51 Aligned_cols=30 Identities=10% Similarity=0.323 Sum_probs=24.9
Q ss_pred hcccccccEEEEEeecCCCCceeeeeeEEEEeec
Q 005799 326 RVHWLCGMRFKMAFETEDSSRISWFMGTISSVQV 359 (676)
Q Consensus 326 ~~~w~~GmRFkM~fE~EDss~~~w~~GTI~gv~~ 359 (676)
...|.+|+.+.-.|..+. .||.++|.++..
T Consensus 6 ~~~~~vGd~c~A~~s~Dg----~wYrA~I~~v~~ 35 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDG----QCYEAEIEEIDE 35 (64)
T ss_dssp SSCCCTTCEEEEECTTTS----SEEEEEEEEEET
T ss_pred CCCCCCCCEEEEEECCCC----CEEEEEEEEEcC
Confidence 458999999999995433 699999999974
No 21
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=27.09 E-value=18 Score=28.19 Aligned_cols=13 Identities=46% Similarity=0.509 Sum_probs=11.2
Q ss_pred eEEEEcCCCCeEe
Q 005799 638 HVLYQDASGAIKR 650 (676)
Q Consensus 638 ~v~Y~D~eGd~ml 650 (676)
.|+|+|.+|+|=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 5999999999954
No 22
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=25.20 E-value=68 Score=29.92 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=32.8
Q ss_pred eEEEEEeCCCCeEEEEEEEe---------CCCCccee--ccchhHHhhhcCCCCCCEEEE
Q 005799 151 QTVVAKDVHGEIWKFRHIYR---------GTPRRHLL--TTGWSTFVNQKKLVAGDSIVF 199 (676)
Q Consensus 151 q~L~~~D~~G~~W~Fr~iyr---------~~~rr~lL--TtGWs~FV~~K~L~aGD~VVF 199 (676)
.++.+.|.+|++=....--. ..+-+|+| ..|| +.+.++++||.|.|
T Consensus 84 LDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 84 LDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGL---AARLGIKPGDKVEW 140 (140)
T ss_dssp EEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTH---HHHHTCCTTCEEEC
T ss_pred eEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcCh---HHHcCCCCCCEEeC
Confidence 57788888888777654211 12347887 6887 68899999999875
No 23
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=24.47 E-value=72 Score=27.68 Aligned_cols=40 Identities=5% Similarity=0.169 Sum_probs=31.8
Q ss_pred hcccccccEEEEEeecCCCCceeeeeeEEEEeecCCCCCCCCCCccccccccCCc
Q 005799 326 RVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEP 380 (676)
Q Consensus 326 ~~~w~~GmRFkM~fE~EDss~~~w~~GTI~gv~~~dp~~wp~S~WR~L~V~WDe~ 380 (676)
...|.+|+++--++ ++- +||-+||.+|... ..+.|++++.
T Consensus 19 ~~~f~vGd~VlArW-~D~----~yYPAkI~sV~~~----------~~YtV~F~DG 58 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDC----RFYPAKVTAVNKD----------GTYTVKFYDG 58 (85)
T ss_dssp --CCCTTCEEEEEC-TTS----CEEEEEEEEECTT----------SEEEEEETTS
T ss_pred CcccccCCEEEEEe-CCC----CEeeEEEEEECCC----------CeEEEEEeCC
Confidence 45899999999999 433 6999999999752 3689999984
No 24
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=24.12 E-value=78 Score=27.12 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=18.0
Q ss_pred hcCCCCCCEEEEEEe-cCCcEEE-EEEE
Q 005799 188 QKKLVAGDSIVFLRA-QDGDLCV-GIRR 213 (676)
Q Consensus 188 ~K~L~aGD~VVF~R~-~nGeL~V-GIRR 213 (676)
-.+|++||.|.|.-. .+|.+.| .|++
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~it~i~~ 86 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLLQDIKV 86 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEEe
Confidence 367999999999765 4555544 5544
No 25
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=23.72 E-value=1.9e+02 Score=25.11 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=34.5
Q ss_pred ceEEEEEeCCCCeEEEEEEEeCCCCcceeccchhHHhhhcCCCCCCEEEEEEe----cCCcEEEEEEEccc
Q 005799 150 VQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRA----QDGDLCVGIRRAKK 216 (676)
Q Consensus 150 ~q~L~~~D~~G~~W~Fr~iyr~~~rr~lLTtGWs~FV~~K~L~aGD~VVF~R~----~nGeL~VGIRR~~~ 216 (676)
..++.+.|..| ..++..|+.. |.+||+|.+... =+|.+.+.|-|..+
T Consensus 39 v~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~~ 89 (106)
T 2k75_A 39 VYQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSSR 89 (106)
T ss_dssp EEEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTSE
T ss_pred EEEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcEE
Confidence 35788999999 5777888543 889999999754 27777777755444
No 26
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.59 E-value=63 Score=27.03 Aligned_cols=39 Identities=8% Similarity=0.238 Sum_probs=30.8
Q ss_pred cccccccEEEEEeecCCCCceeeeeeEEEEeecCCCCCCCCCCccccccccCCc
Q 005799 327 VHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEP 380 (676)
Q Consensus 327 ~~w~~GmRFkM~fE~EDss~~~w~~GTI~gv~~~dp~~wp~S~WR~L~V~WDe~ 380 (676)
..|.+|+++.-+|. +. .||.+||.+|.. + ....|..++-
T Consensus 8 ~~~kvGd~clA~ws-Dg----~~Y~A~I~~v~~-------~---~~~~V~f~Dy 46 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DC----RYYPAKIEAINK-------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCTTCEEEEECS-SS----SEEEEEEEEEST-------T---SSEEEEETTS
T ss_pred CCCCCCCEEEEECC-CC----CEEEEEEEEECC-------C---CEEEEEEecC
Confidence 57999999999996 33 699999999963 1 3567888764
No 27
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.04 E-value=46 Score=31.84 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.2
Q ss_pred hcCCCCCCEEEEEEecCCcEEEEEEE
Q 005799 188 QKKLVAGDSIVFLRAQDGDLCVGIRR 213 (676)
Q Consensus 188 ~K~L~aGD~VVF~R~~nGeL~VGIRR 213 (676)
-..|.+||.|-|++..+|+|.+.|--
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~iNg 140 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWVNG 140 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEESS
T ss_pred ccccCCCCEEEEEEcCCcEEEEEECC
Confidence 34578999999999999999998743
No 28
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=22.78 E-value=90 Score=26.21 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=17.9
Q ss_pred hcCCCCCCEEEEEEe-cCCcEEE-EEEE
Q 005799 188 QKKLVAGDSIVFLRA-QDGDLCV-GIRR 213 (676)
Q Consensus 188 ~K~L~aGD~VVF~R~-~nGeL~V-GIRR 213 (676)
-.+|++||.|.|.-. .+|.+.| .|++
T Consensus 51 l~~lk~Gd~V~F~~~~~~~~~~it~i~~ 78 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQQGNLSLLQDIKV 78 (80)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEEe
Confidence 467999999999765 4555544 5543
No 29
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=20.93 E-value=80 Score=27.20 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=24.4
Q ss_pred hcccccccEEEEEeecCCCCceeeeeeEEEEeec
Q 005799 326 RVHWLCGMRFKMAFETEDSSRISWFMGTISSVQV 359 (676)
Q Consensus 326 ~~~w~~GmRFkM~fE~EDss~~~w~~GTI~gv~~ 359 (676)
...|.+|+.+.-.|..+. .||.++|.++..
T Consensus 8 ~~~~kvGd~C~A~ys~Dg----~wYrA~I~~i~~ 37 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWSEDG----CIYPATIASIDF 37 (88)
T ss_dssp -CCCCSSCEEEEECTTTC----CEEEEEEEEEET
T ss_pred cCCCCCCCEEEEEECCCC----CEEEEEEEEecC
Confidence 358999999999995333 699999999974
No 30
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=20.47 E-value=1.1e+02 Score=28.16 Aligned_cols=60 Identities=7% Similarity=0.159 Sum_probs=40.2
Q ss_pred CCCEEEEEecCCCCCceEEehHHHHH----HHhcccccccEEEEEeecCCCCceeeeeeEEEEee
Q 005799 298 GKPFEVVYYPRASTPEFCVKASAVKA----AMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQ 358 (676)
Q Consensus 298 g~~F~V~Y~Pr~~~~eFvV~~~~y~~----A~~~~w~~GmRFkM~fE~EDss~~~w~~GTI~gv~ 358 (676)
...+.|.|.--. .++-.|+.+.++- +.+..+++|+.+......+|.-...||.|+|..+.
T Consensus 27 ~d~~~V~f~n~w-~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k 90 (128)
T 3h8z_A 27 EDSVTIFFENNW-QSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMK 90 (128)
T ss_dssp SSEEEEEETTCT-TCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CCCEEEEEEEEEEE
T ss_pred CCcEEEEEcccc-CcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCcCccEEEEEEEee
Confidence 445888896431 2477888776652 34468999999999887666444569999999996
Done!