Query 005800
Match_columns 676
No_of_seqs 317 out of 1333
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 13:55:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0906 Phosphatidylinositol 3 100.0 2E-155 4E-160 1260.9 48.2 652 1-676 1-701 (843)
2 KOG0904 Phosphatidylinositol 3 100.0 4E-120 8E-125 1009.5 39.8 555 12-676 339-930 (1076)
3 KOG0905 Phosphoinositide 3-kin 100.0 3E-102 6E-107 880.7 39.1 523 50-676 653-1203(1639)
4 cd00895 PI3Kc_C2_beta Phosphoi 100.0 4.9E-52 1.1E-56 442.5 22.9 198 472-676 2-210 (354)
5 cd00872 PI3Ka_I Phosphoinositi 100.0 1.7E-50 3.7E-55 392.9 19.5 167 287-457 2-168 (171)
6 cd00870 PI3Ka_III Phosphoinosi 100.0 1.8E-50 3.9E-55 391.7 18.7 159 279-437 1-166 (166)
7 cd00896 PI3Kc_III Phosphoinosi 100.0 2.3E-49 4.9E-54 425.1 23.5 205 472-676 2-209 (350)
8 cd05177 PI3Kc_C2_gamma Phospho 100.0 1.4E-49 3E-54 425.3 21.8 198 472-676 2-210 (354)
9 cd05165 PI3Kc_I Phosphoinositi 100.0 1.8E-49 4E-54 426.0 21.0 199 472-676 2-219 (366)
10 cd05176 PI3Kc_C2_alpha Phospho 100.0 3.6E-49 7.8E-54 420.5 21.6 198 471-676 1-209 (353)
11 cd05175 PI3Kc_IA_alpha Phospho 100.0 7.1E-49 1.5E-53 418.9 20.9 197 473-676 3-218 (366)
12 cd00894 PI3Kc_IB_gamma Phospho 100.0 9.3E-49 2E-53 419.5 21.5 199 472-676 2-219 (365)
13 cd05174 PI3Kc_IA_delta Phospho 100.0 1.1E-48 2.4E-53 418.3 21.6 196 472-676 2-215 (361)
14 KOG0902 Phosphatidylinositol 4 100.0 9E-48 1.9E-52 445.1 30.2 347 310-676 1292-1659(1803)
15 cd05173 PI3Kc_IA_beta Phosphoi 100.0 2E-48 4.3E-53 417.5 22.2 197 472-676 2-215 (362)
16 cd05166 PI3Kc_II Phosphoinosit 100.0 1.1E-47 2.4E-52 412.1 22.3 197 472-676 2-209 (353)
17 cd00891 PI3Kc Phosphoinositide 100.0 2.5E-47 5.5E-52 409.9 21.5 197 472-676 2-210 (352)
18 PF00613 PI3Ka: Phosphoinositi 100.0 2.3E-47 5E-52 376.9 19.5 176 280-459 1-176 (184)
19 cd00869 PI3Ka_II Phosphoinosit 100.0 4E-47 8.7E-52 367.3 19.3 165 287-456 2-167 (169)
20 smart00145 PI3Ka Phosphoinosit 100.0 3E-46 6.6E-51 368.1 20.7 169 285-457 4-173 (184)
21 cd00864 PI3Ka Phosphoinositide 100.0 9.5E-43 2.1E-47 333.9 17.6 151 287-437 2-152 (152)
22 cd05167 PI4Kc_III_alpha Phosph 100.0 3.9E-41 8.5E-46 355.4 17.6 150 524-676 1-167 (311)
23 cd08397 C2_PI3K_class_III C2 d 100.0 2.5E-38 5.4E-43 305.6 15.1 145 33-183 15-159 (159)
24 cd00871 PI4Ka Phosphoinositide 100.0 4.3E-35 9.3E-40 284.8 16.6 143 291-439 9-152 (175)
25 cd00893 PI4Kc_III Phosphoinosi 100.0 1.6E-33 3.4E-38 295.5 11.0 139 536-676 3-146 (289)
26 cd00892 PIKKc_ATR ATR (Ataxia 100.0 7.2E-33 1.6E-37 284.2 13.2 137 535-676 3-146 (237)
27 cd05172 PIKKc_DNA-PK DNA-depen 100.0 6.2E-33 1.3E-37 284.3 12.5 137 534-676 2-143 (235)
28 cd08398 C2_PI3K_class_I_alpha 100.0 3.6E-31 7.8E-36 255.2 15.9 117 12-148 4-124 (158)
29 cd05168 PI4Kc_III_beta Phospho 100.0 6.3E-32 1.4E-36 283.8 11.5 126 548-676 16-148 (293)
30 cd00142 PI3Kc_like Phosphoinos 100.0 2.2E-31 4.7E-36 270.5 13.5 130 537-676 4-135 (219)
31 PF00792 PI3K_C2: Phosphoinosi 100.0 3.3E-32 7.1E-37 258.6 5.5 132 53-195 2-142 (142)
32 cd05164 PIKKc Phosphoinositide 100.0 6.6E-31 1.4E-35 267.4 12.7 132 534-676 2-138 (222)
33 cd05169 PIKKc_TOR TOR (Target 100.0 6.5E-31 1.4E-35 276.4 11.9 137 535-676 3-188 (280)
34 PTZ00303 phosphatidylinositol 100.0 2.3E-30 5.1E-35 285.9 15.7 145 519-676 934-1152(1374)
35 cd08693 C2_PI3K_class_I_beta_d 100.0 6.7E-30 1.4E-34 250.4 16.0 121 11-149 3-139 (173)
36 cd08399 C2_PI3K_class_I_gamma 100.0 6.7E-30 1.5E-34 250.1 15.9 119 11-147 5-139 (178)
37 cd05171 PIKKc_ATM Ataxia telan 100.0 2.6E-30 5.6E-35 271.5 12.0 134 539-676 6-188 (279)
38 cd04012 C2A_PI3K_class_II C2 d 100.0 2.2E-29 4.8E-34 246.5 14.8 126 11-152 3-141 (171)
39 COG5032 TEL1 Phosphatidylinosi 100.0 3.5E-28 7.5E-33 308.6 26.2 384 280-676 1487-1949(2105)
40 cd08380 C2_PI3K_like C2 domain 100.0 1E-28 2.2E-33 238.1 15.5 125 11-152 3-129 (156)
41 cd05170 PIKKc_SMG1 Suppressor 100.0 3E-28 6.4E-33 259.0 12.5 92 535-627 3-99 (307)
42 KOG0890 Protein kinase of the 99.9 1.5E-26 3.3E-31 281.6 26.5 324 326-676 1824-2226(2382)
43 smart00146 PI3Kc Phosphoinosit 99.9 1.9E-26 4.2E-31 231.5 10.4 102 565-676 2-108 (202)
44 cd05163 TRRAP TRansformation/t 99.9 1E-23 2.2E-28 218.6 11.9 130 543-676 11-161 (253)
45 PF00454 PI3_PI4_kinase: Phosp 99.9 9.6E-24 2.1E-28 215.8 9.9 111 562-676 1-141 (235)
46 KOG0892 Protein kinase ATM/Tel 99.9 4.5E-22 9.9E-27 244.1 22.9 325 324-676 2240-2632(2806)
47 KOG0903 Phosphatidylinositol 4 99.9 8E-22 1.7E-26 220.8 12.1 113 561-676 586-702 (847)
48 smart00142 PI3K_C2 Phosphoinos 99.8 4E-20 8.7E-25 165.7 7.8 64 53-116 32-95 (100)
49 KOG0891 DNA-dependent protein 99.4 1.8E-14 4E-19 181.5 0.7 143 529-676 1955-2145(2341)
50 cd08409 C2B_Synaptotagmin-15 C 97.2 0.0029 6.2E-08 59.9 10.4 76 52-129 34-109 (137)
51 cd08410 C2B_Synaptotagmin-17 C 97.0 0.0046 1E-07 58.2 9.9 79 52-132 34-112 (135)
52 cd08381 C2B_PI3K_class_II C2 d 97.0 0.0076 1.6E-07 55.8 11.2 104 6-129 4-108 (122)
53 cd08392 C2A_SLP-3 C2 domain fi 97.0 0.0094 2E-07 55.9 11.3 76 52-129 36-111 (128)
54 smart00239 C2 Protein kinase C 96.9 0.0078 1.7E-07 51.3 10.0 74 52-131 20-93 (101)
55 cd08692 C2B_Tac2-N C2 domain s 96.9 0.0023 4.9E-08 60.8 7.0 74 53-129 35-109 (135)
56 cd08680 C2_Kibra C2 domain fou 96.9 0.011 2.4E-07 55.2 11.5 79 51-130 33-111 (124)
57 cd08393 C2A_SLP-1_2 C2 domain 96.9 0.011 2.3E-07 55.0 11.2 77 52-130 36-112 (125)
58 cd08407 C2B_Synaptotagmin-13 C 96.9 0.0084 1.8E-07 57.1 10.3 74 53-128 38-111 (138)
59 cd04029 C2A_SLP-4_5 C2 domain 96.8 0.013 2.8E-07 54.6 11.2 76 52-129 36-111 (125)
60 cd08405 C2B_Synaptotagmin-7 C2 96.7 0.015 3.2E-07 54.6 10.8 76 52-129 35-110 (136)
61 cd08388 C2A_Synaptotagmin-4-11 96.6 0.027 5.8E-07 52.6 11.9 118 5-145 6-124 (128)
62 cd08402 C2B_Synaptotagmin-1 C2 96.6 0.028 6E-07 52.7 12.0 75 52-128 35-109 (136)
63 cd08408 C2B_Synaptotagmin-14_1 96.6 0.022 4.7E-07 54.1 10.8 76 52-129 35-111 (138)
64 cd00276 C2B_Synaptotagmin C2 d 96.6 0.021 4.6E-07 52.8 10.6 76 52-129 34-109 (134)
65 cd08406 C2B_Synaptotagmin-12 C 96.5 0.024 5.3E-07 53.7 10.9 76 52-129 35-110 (136)
66 cd08685 C2_RGS-like C2 domain 96.5 0.022 4.8E-07 52.6 10.4 76 52-130 31-107 (119)
67 cd08395 C2C_Munc13 C2 domain t 96.5 0.012 2.6E-07 54.7 8.1 90 52-146 19-109 (120)
68 cd08677 C2A_Synaptotagmin-13 C 96.4 0.034 7.3E-07 51.7 10.8 73 53-128 32-104 (118)
69 cd08696 C2_Dock-C C2 domains f 96.4 0.039 8.5E-07 54.9 11.9 66 80-147 64-135 (179)
70 cd08404 C2B_Synaptotagmin-4 C2 96.4 0.033 7.2E-07 52.2 11.0 76 52-129 35-110 (136)
71 cd08385 C2A_Synaptotagmin-1-5- 96.4 0.038 8.2E-07 50.8 11.0 73 53-129 37-109 (124)
72 cd08387 C2A_Synaptotagmin-8 C2 96.4 0.043 9.4E-07 50.4 11.3 74 53-130 37-110 (124)
73 cd08384 C2B_Rabphilin_Doc2 C2 96.3 0.028 6E-07 52.4 9.7 74 52-127 33-106 (133)
74 cd08403 C2B_Synaptotagmin-3-5- 96.2 0.049 1.1E-06 50.9 10.9 75 52-128 34-108 (134)
75 cd04028 C2B_RIM1alpha C2 domai 96.2 0.017 3.6E-07 55.7 7.8 72 53-129 51-123 (146)
76 cd08694 C2_Dock-A C2 domains f 96.2 0.022 4.8E-07 57.2 8.6 67 80-147 63-134 (196)
77 cd04041 C2A_fungal C2 domain f 96.2 0.033 7.1E-07 50.4 9.1 74 53-129 23-96 (111)
78 cd08386 C2A_Synaptotagmin-7 C2 96.2 0.051 1.1E-06 49.9 10.6 73 53-129 37-110 (125)
79 PF00168 C2: C2 domain; Inter 96.1 0.052 1.1E-06 45.2 9.7 66 52-123 19-84 (85)
80 cd08688 C2_KIAA0528-like C2 do 96.1 0.04 8.6E-07 49.8 9.1 71 52-129 20-91 (110)
81 cd04031 C2A_RIM1alpha C2 domai 96.0 0.071 1.5E-06 48.8 10.9 76 52-129 36-112 (125)
82 KOG0889 Histone acetyltransfer 96.0 0.019 4.1E-07 75.9 9.2 141 532-676 3193-3390(3550)
83 cd08389 C2A_Synaptotagmin-14_1 96.0 0.067 1.4E-06 49.6 10.7 74 52-130 36-110 (124)
84 cd04009 C2B_Munc13-like C2 dom 96.0 0.093 2E-06 49.1 11.7 76 52-127 36-113 (133)
85 cd08521 C2A_SLP C2 domain firs 96.0 0.082 1.8E-06 48.2 11.0 76 52-129 35-110 (123)
86 cd04030 C2C_KIAA1228 C2 domain 96.0 0.086 1.9E-06 48.5 11.2 77 52-130 36-114 (127)
87 cd08390 C2A_Synaptotagmin-15-1 96.0 0.056 1.2E-06 49.4 9.8 73 53-129 36-108 (123)
88 cd04037 C2E_Ferlin C2 domain f 95.9 0.067 1.5E-06 49.6 10.1 71 52-129 20-90 (124)
89 PLN02222 phosphoinositide phos 95.9 0.05 1.1E-06 63.1 10.9 86 51-145 477-563 (581)
90 cd04032 C2_Perforin C2 domain 95.9 0.078 1.7E-06 49.8 10.4 69 52-128 47-115 (127)
91 PF14429 DOCK-C2: C2 domain in 95.9 0.038 8.1E-07 55.0 8.7 64 81-146 70-137 (184)
92 cd08682 C2_Rab11-FIP_classI C2 95.7 0.072 1.6E-06 49.2 9.6 72 52-129 19-92 (126)
93 cd00275 C2_PLC_like C2 domain 95.7 0.17 3.7E-06 46.3 12.1 84 52-143 24-108 (128)
94 cd00030 C2 C2 domain. The C2 d 95.6 0.1 2.2E-06 43.8 9.4 72 52-131 19-90 (102)
95 cd04036 C2_cPLA2 C2 domain pre 95.6 0.083 1.8E-06 48.2 9.3 70 52-128 20-89 (119)
96 cd08679 C2_DOCK180_related C2 95.5 0.08 1.7E-06 52.4 9.5 68 79-147 61-134 (178)
97 cd04044 C2A_Tricalbin-like C2 95.4 0.048 1E-06 49.7 7.0 69 53-129 24-92 (124)
98 PLN02952 phosphoinositide phos 95.3 0.12 2.5E-06 60.4 11.2 85 51-144 495-580 (599)
99 PLN02223 phosphoinositide phos 95.3 0.1 2.2E-06 59.8 10.4 85 51-144 433-518 (537)
100 PLN02230 phosphoinositide phos 95.2 0.097 2.1E-06 60.9 10.4 86 51-145 494-580 (598)
101 cd04035 C2A_Rabphilin_Doc2 C2 95.2 0.16 3.5E-06 46.5 9.9 73 52-127 35-108 (123)
102 cd04033 C2_NEDD4_NEDD4L C2 dom 95.2 0.17 3.6E-06 47.0 10.0 73 52-129 20-94 (133)
103 cd04051 C2_SRC2_like C2 domain 95.1 0.13 2.9E-06 47.2 9.2 74 52-130 20-95 (125)
104 cd04045 C2C_Tricalbin-like C2 95.1 0.16 3.5E-06 46.8 9.5 81 52-141 21-101 (120)
105 cd04050 C2B_Synaptotagmin-like 95.0 0.16 3.4E-06 45.4 9.1 66 52-129 20-85 (105)
106 cd04039 C2_PSD C2 domain prese 95.0 0.085 1.9E-06 47.9 7.3 69 53-129 26-94 (108)
107 cd04019 C2C_MCTP_PRT_plant C2 95.0 0.2 4.3E-06 48.3 10.2 70 52-130 20-90 (150)
108 cd08382 C2_Smurf-like C2 domai 95.0 0.22 4.7E-06 46.0 10.0 69 52-130 20-90 (123)
109 cd04018 C2C_Ferlin C2 domain t 94.9 0.092 2E-06 50.8 7.7 70 52-129 34-103 (151)
110 cd04022 C2A_MCTP_PRT_plant C2 94.9 0.14 3E-06 47.4 8.6 71 52-128 20-91 (127)
111 cd04020 C2B_SLP_1-2-3-4 C2 dom 94.8 0.21 4.5E-06 48.7 10.0 75 52-128 47-122 (162)
112 cd04042 C2A_MCTP_PRT C2 domain 94.8 0.22 4.8E-06 45.5 9.6 68 53-129 21-88 (121)
113 cd08375 C2_Intersectin C2 doma 94.8 0.25 5.5E-06 46.7 10.2 69 52-129 35-103 (136)
114 PLN02228 Phosphoinositide phos 94.7 0.2 4.4E-06 58.0 10.9 85 51-144 456-542 (567)
115 cd04026 C2_PKC_alpha_gamma C2 94.6 0.39 8.5E-06 44.5 11.0 73 53-128 34-106 (131)
116 cd08376 C2B_MCTP_PRT C2 domain 94.5 0.34 7.4E-06 43.8 10.0 68 53-129 21-88 (116)
117 cd04040 C2D_Tricalbin-like C2 94.5 0.32 6.9E-06 43.8 9.8 69 53-129 20-88 (115)
118 cd04025 C2B_RasA1_RasA4 C2 dom 94.4 0.39 8.4E-06 44.0 10.3 68 53-129 21-88 (123)
119 cd08373 C2A_Ferlin C2 domain f 94.2 0.35 7.6E-06 44.6 9.7 68 53-127 15-82 (127)
120 cd08697 C2_Dock-D C2 domains f 94.2 0.22 4.7E-06 49.9 8.6 65 80-145 66-139 (185)
121 cd04021 C2_E3_ubiquitin_ligase 94.1 0.2 4.4E-06 46.4 7.8 66 53-128 22-87 (125)
122 cd04014 C2_PKC_epsilon C2 doma 94.1 0.19 4.1E-06 46.8 7.6 68 52-129 34-101 (132)
123 cd08379 C2D_MCTP_PRT_plant C2 94.0 0.49 1.1E-05 44.4 10.1 68 52-129 23-96 (126)
124 cd04048 C2A_Copine C2 domain f 94.0 0.16 3.4E-06 46.6 6.7 74 53-129 21-99 (120)
125 cd08690 C2_Freud-1 C2 domain f 94.0 0.54 1.2E-05 45.8 10.6 76 52-129 24-106 (155)
126 cd04011 C2B_Ferlin C2 domain s 93.9 0.23 5.1E-06 44.7 7.6 71 53-129 21-92 (111)
127 cd08400 C2_Ras_p21A1 C2 domain 93.9 0.49 1.1E-05 43.9 9.9 69 53-130 22-90 (126)
128 cd04043 C2_Munc13_fungal C2 do 93.7 0.55 1.2E-05 43.1 9.9 70 52-127 21-90 (126)
129 cd04024 C2A_Synaptotagmin-like 93.7 0.5 1.1E-05 43.3 9.6 68 53-129 24-91 (128)
130 KOG0169 Phosphoinositide-speci 93.7 0.21 4.6E-06 58.7 8.4 108 18-145 618-726 (746)
131 cd08678 C2_C21orf25-like C2 do 93.6 0.23 5.1E-06 45.9 7.3 70 52-129 17-86 (126)
132 cd04049 C2_putative_Elicitor-r 93.4 0.69 1.5E-05 42.4 9.9 71 53-129 22-93 (124)
133 cd08681 C2_fungal_Inn1p-like C 93.4 0.6 1.3E-05 42.3 9.4 67 53-129 22-89 (118)
134 cd04038 C2_ArfGAP C2 domain pr 93.1 0.32 6.9E-06 46.7 7.4 67 52-128 21-87 (145)
135 cd04052 C2B_Tricalbin-like C2 93.0 0.36 7.8E-06 43.7 7.3 68 53-129 13-80 (111)
136 cd04010 C2B_RasA3 C2 domain se 92.8 0.32 7E-06 46.8 7.1 77 52-129 18-106 (148)
137 cd08695 C2_Dock-B C2 domains f 92.8 0.28 6E-06 49.3 6.8 67 80-147 63-132 (189)
138 cd08378 C2B_MCTP_PRT_plant C2 92.7 0.91 2E-05 41.9 9.6 67 53-129 17-83 (121)
139 cd04047 C2B_Copine C2 domain s 92.6 0.41 8.8E-06 42.9 7.0 74 52-129 20-97 (110)
140 cd08391 C2A_C2C_Synaptotagmin_ 92.4 0.52 1.1E-05 42.6 7.6 69 52-130 27-95 (121)
141 cd08675 C2B_RasGAP C2 domain s 92.4 0.45 9.7E-06 45.0 7.3 76 52-129 18-105 (137)
142 cd08377 C2C_MCTP_PRT C2 domain 92.4 1.1 2.5E-05 40.4 9.8 67 53-129 22-88 (119)
143 cd04016 C2_Tollip C2 domain pr 92.1 0.54 1.2E-05 43.7 7.4 80 52-145 21-101 (121)
144 cd08374 C2F_Ferlin C2 domain s 92.0 0.57 1.2E-05 44.4 7.4 77 51-128 23-119 (133)
145 cd08676 C2A_Munc13-like C2 dom 92.0 1.1 2.4E-05 43.5 9.5 50 73-129 92-141 (153)
146 cd08686 C2_ABR C2 domain in th 91.9 1.1 2.4E-05 41.6 9.1 69 53-127 15-90 (118)
147 KOG1028 Ca2+-dependent phospho 91.7 0.67 1.5E-05 52.2 8.8 75 49-125 315-389 (421)
148 cd04015 C2_plant_PLD C2 domain 91.6 0.65 1.4E-05 45.1 7.6 67 51-127 56-122 (158)
149 cd04054 C2A_Rasal1_RasA4 C2 do 91.6 1.6 3.5E-05 40.0 9.9 67 53-128 21-87 (121)
150 PF13575 DUF4135: Domain of un 91.1 1.5 3.3E-05 48.4 10.8 111 532-675 44-154 (370)
151 cd08691 C2_NEDL1-like C2 domai 90.9 0.9 2E-05 43.2 7.6 73 52-129 20-103 (137)
152 cd04046 C2_Calpain C2 domain p 89.9 2.5 5.5E-05 39.0 9.6 66 53-129 24-89 (126)
153 cd04017 C2D_Ferlin C2 domain f 89.6 1.7 3.6E-05 40.7 8.2 69 52-126 21-95 (135)
154 cd08383 C2A_RasGAP C2 domain ( 88.8 2.4 5.2E-05 38.1 8.4 71 52-129 17-87 (117)
155 PF14186 Aida_C2: Cytoskeletal 88.7 1.9 4.2E-05 41.6 7.9 89 53-145 31-123 (147)
156 cd04027 C2B_Munc13 C2 domain s 88.5 3.5 7.5E-05 38.2 9.5 67 53-129 22-99 (127)
157 cd08401 C2A_RasA2_RasA3 C2 dom 87.9 1.9 4.1E-05 39.8 7.2 69 52-129 21-89 (121)
158 PLN03008 Phospholipase D delta 83.0 3 6.6E-05 50.4 7.4 67 51-127 75-141 (868)
159 cd04013 C2_SynGAP_like C2 doma 81.8 4.1 8.9E-05 39.3 6.6 68 54-130 28-99 (146)
160 KOG1030 Predicted Ca2+-depende 80.7 3.6 7.9E-05 40.5 5.8 66 54-129 28-93 (168)
161 KOG1028 Ca2+-dependent phospho 80.3 10 0.00022 42.9 10.1 110 5-133 155-264 (421)
162 cd08394 C2A_Munc13 C2 domain f 79.7 7.4 0.00016 36.7 7.4 62 56-129 23-84 (127)
163 cd08684 C2A_Tac2-N C2 domain f 74.4 5.5 0.00012 35.5 4.5 73 51-129 19-91 (103)
164 COG5038 Ca2+-dependent lipid-b 67.3 18 0.00038 45.2 8.2 87 18-127 438-524 (1227)
165 cd08689 C2_fungal_Pkc1p C2 dom 60.6 24 0.00053 32.4 6.0 49 81-135 43-91 (109)
166 KOG0696 Serine/threonine prote 60.4 20 0.00043 40.4 6.3 74 52-128 200-273 (683)
167 PF10358 NT-C2: N-terminal C2 59.0 65 0.0014 30.0 9.0 93 17-132 8-106 (143)
168 PLN03200 cellulose synthase-in 56.9 19 0.00041 48.1 6.4 81 53-141 1999-2080(2102)
169 PF03130 HEAT_PBS: PBS lyase H 54.6 21 0.00046 24.1 3.5 26 372-400 1-26 (27)
170 PF07162 B9-C2: Ciliary basal 50.6 1.1E+02 0.0025 29.8 9.4 89 52-145 16-116 (168)
171 PF13646 HEAT_2: HEAT repeats; 47.1 20 0.00044 30.0 3.2 32 368-402 43-74 (88)
172 cd04792 LanM-like LanM-like pr 35.4 2.1E+02 0.0045 35.0 10.5 91 549-675 104-194 (825)
173 PF10366 Vps39_1: Vacuolar sor 34.3 43 0.00092 30.6 3.3 75 315-389 6-98 (108)
174 PF07035 Mic1: Colon cancer-as 33.5 1E+02 0.0022 30.5 6.0 78 355-432 60-147 (167)
175 cd08321 Pyrin_ASC-like Pyrin D 33.1 50 0.0011 28.7 3.4 71 303-392 10-80 (82)
176 KOG1242 Protein containing ada 29.8 5.2E+02 0.011 30.5 11.7 110 334-443 267-411 (569)
177 PF12755 Vac14_Fab1_bd: Vacuol 28.7 69 0.0015 28.7 3.6 32 369-400 40-74 (97)
178 KOG1328 Synaptic vesicle prote 26.0 1.1E+02 0.0024 36.8 5.4 93 74-175 181-324 (1103)
179 PF13646 HEAT_2: HEAT repeats; 25.5 1E+02 0.0022 25.7 4.0 30 368-400 12-41 (88)
180 PF15625 CC2D2AN-C2: CC2D2A N- 22.3 2.7E+02 0.0057 27.3 6.7 73 53-133 35-109 (168)
181 cd08320 Pyrin_NALPs Pyrin deat 22.1 1E+02 0.0023 27.0 3.4 69 303-389 9-77 (86)
182 KOG2063 Vacuolar assembly/sort 21.0 2.1E+02 0.0045 35.5 6.7 71 288-373 541-612 (877)
183 PF02985 HEAT: HEAT repeat; I 20.5 66 0.0014 22.2 1.5 14 369-382 13-26 (31)
No 1
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-155 Score=1260.88 Aligned_cols=652 Identities=49% Similarity=0.817 Sum_probs=603.5
Q ss_pred CCCCceEEEeeCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCC
Q 005800 1 MSGNEFRFFLSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMG 80 (676)
Q Consensus 1 ~~~~~~~~~~s~dl~~~~~~ki~~leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~ 80 (676)
|+.+.|+||+||||+.||++||++|||..+ +.+|.+.. .++++...++++|+|++|..|++++.|+.|+|++|.
T Consensus 1 M~~~~f~f~~Scdl~~~v~vKi~~leg~~~-~~~p~~~~-----~~l~~e~~~~l~~~c~v~~~~~~~~lP~~ts~~~~~ 74 (843)
T KOG0906|consen 1 MGAEKFSFCYSCDLDINVQVKIGSLEGKRP-LLNPMLKL-----IGLFQETSSDLYVTCQVFAEGKPFALPVRTSYKAFS 74 (843)
T ss_pred CCcceeEEEeeccCCcceEEEEEeeccccc-ccChHHHH-----HhhhcccchhhhheeeeeccCCcccCCccccccccC
Confidence 888999999999999999999999999998 56888776 888999999999999999999999999999999999
Q ss_pred CCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecccccccccceeeEeecCCCCCCCCCCCCCCC
Q 005800 81 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPTSTPGK 160 (676)
Q Consensus 81 ~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~~Lr~G~~~l~lw~~~~~d~~~~~~~p~~ 160 (676)
+.++|||||+|||+|+||+++|+|++|||++++++...+||++++.||+++|.||+|.++|.+|+++++||+.+++.+
T Consensus 75 ~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~k~~~lk~G~~~l~~~~~~e~d~~~pt~~~-- 152 (843)
T KOG0906|consen 75 KRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFGKYGMLKQGMQDLKLWPSVEADGSVPTSSS-- 152 (843)
T ss_pred CccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeecccchHhhhhhhccccccccCCCccCCCcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887522
Q ss_pred CCCCchhhHHHHHHHHhhhhcccccccchhhhhhHHHHHHHHHhhhccCCC--CceEEEEEeCCCCceeEeecCCCCCCC
Q 005800 161 VPKNERGELERLEKLINKYEREQIQRVDWLDRLTFKALEKIKEQENFRNGN--SYLYLVVDFGRLEHRVVFQDSGANFLL 238 (676)
Q Consensus 161 ~~~~~~~~~~rl~~l~~~~~~G~~~~~~wlD~l~~~~i~~~~~~~~~~~~~--~~~~L~iefp~f~~~vv~~~~~~~~~~ 238 (676)
..++||+||+++++||++|++++|+|||+++|++|+.++ +..+.++ .-.++.|+|.. .+||+|.+.. ..
T Consensus 153 ---~~~~ei~rl~kl~~k~~~G~v~~v~WLD~~t~~~i~~i~--~~~k~~Sm~~l~~v~id~~~-~~~v~~~~~~---~~ 223 (843)
T KOG0906|consen 153 ---TSEDEINRLAKLLNKYRQGHVVSVDWLDRLTFRKIEMIN--ESWKHSSMLELPCVKIDFKE-YGPVYYEKSM---DV 223 (843)
T ss_pred ---chhhHHHHHHHHHHHHhcCCCccCcccchhhhhhhHhhh--hcccccceeEEeEEEeeccc-ceeeEEecCc---cc
Confidence 368999999999999999999999999999999999987 3334443 22255556554 6899888762 23
Q ss_pred CCCccCCCcceeecCCCCCCCCchhHHHHHHHhhhccCCcccCCCCChHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHH
Q 005800 239 PAPITSTNELVIVWDPEVGKINPSEHKQLKLARSLTRGIIDRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFS 318 (676)
Q Consensus 239 ~~~~~~~~~~~~~~Dpe~~~~n~~e~k~~~l~rs~~~~~~d~~lkp~~~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~ 318 (676)
.+|+.....+++++|||...+||+|.||++|+||+++|++|+|+||+.+.|++|+.|++|||.++||.+||+++||||||
T Consensus 224 ~~p~~~~~~~v~v~Dpel~l~~p~E~Kh~~l~Rs~r~g~~drdlKP~~~~rd~L~~Iv~yPps~~lt~eerdlvWkfR~y 303 (843)
T KOG0906|consen 224 STPINNGVEIVSVADPELLLESPAEVKHRRLARSLRNGPLDRDLKPNKKARDRLETIVNYPPSQVLTREERDLVWKFRYY 303 (843)
T ss_pred ccccCCCceEEEecCcccccCChHHHHHHHHHHHhhcCccccccCcchHHHHHHHHHhcCCCccccchhhhhhhhhhhHH
Confidence 45665667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhHhhccCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 005800 319 LMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQA 398 (676)
Q Consensus 319 l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~f~d~~VR~yAV~~L~~~~d~eL~~yLlQLVQa 398 (676)
|+++++||+|||+||+|.+++|++||++||..|++|+++|||||||+.|.|+.||+|||++|++|+|++|++||+|||||
T Consensus 304 L~~~kKALtK~L~sv~W~~~qe~kqal~lM~~W~~id~~dalellss~f~~~sVrayavsrl~~a~deelllYL~qlvqa 383 (843)
T KOG0906|consen 304 LTNNKKALTKFLRSVNWRDPQEVKQALALMDKWEEIDVEDALELLSSYFTHPSVRAYAVSRLKGADDEELLLYLLQLVQA 383 (843)
T ss_pred HhhCHHHHHHHHHHhhcCChHHHHHHHHHhhccccchhhhhhhhccccccCHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhccc--------------Cc-------------------------------chHHHHHHHHHhhhchhhHHHHHHHHHH
Q 005800 399 LRFER--------------SD-------------------------------KSRLSQFLVQRSSHNIELASFLRWYVSV 433 (676)
Q Consensus 399 LkyE~--------------~~-------------------------------~s~La~FLi~Ral~n~~ig~~lfW~L~~ 433 (676)
||||+ .+ .|+||+||++||+.|+++|+|||||+++
T Consensus 384 l~ye~~~~~p~~~~~~~v~s~~~~si~s~~t~pl~s~ss~~~ts~tke~p~~~s~La~fLi~Ral~n~~l~nflywyl~~ 463 (843)
T KOG0906|consen 384 LKYENGQQLPEEGNPVPVVSEREGSIPSVATTPLESLSSRDMTSTTKEAPKAASDLATFLISRALVNPQLANFLYWYLKV 463 (843)
T ss_pred HHHHhhccCCcccCcCcccccccccccccccCccccccCCCccccccccccccchHHHHHHHHHhcCccccceEEEEEEE
Confidence 99997 11 1479999999999999999999999999
Q ss_pred HccCcchhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhh
Q 005800 434 EFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLL 513 (676)
Q Consensus 434 E~~~~~~~~r~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q~~~i~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~ 513 (676)
|++|..+.+||.+++..+++.+.+ . ..+..++..|..|+.|++.|..|++.++..++++.+|+|+|+.+|....
T Consensus 464 e~Ed~~~~kry~si~~~f~~~l~K----~--~d~r~~~~~L~~Q~~lVd~L~~i~~~v~~~~g~~~kK~e~L~~lL~~~~ 537 (843)
T KOG0906|consen 464 EIEDTPYSKRYLSIMSSFLEALSK----R--PDGRAIRGSLEAQQALVDELRRIMKEVKRGSGRRKKKIERLRGLLGDHK 537 (843)
T ss_pred EecCChHHHHHHHHHHHHHHHhcc----C--cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhccc
Confidence 999999999987776666666653 1 1234688999999999999999999999999999999999999998743
Q ss_pred -hhcccCCCCcccCCCCceEEEEEecCcceeeccCCcceEEEEEecCCC-eEEEEEEeCCchhHHHHHHHHHHHHHHHHH
Q 005800 514 -SELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPLRLTFRTASGG-TCKMIFKKGDDIRQDQLVVQMVSLMDRLLK 591 (676)
Q Consensus 514 -~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~Pl~l~f~~~dg~-~~~~IfK~GDDLRQD~lvlQli~lmd~l~~ 591 (676)
..+..+ .++++|+||++.|+||+++.+++|+|++.|++|+|++.+|+ .|++|||+||||||||||+|||++||+|++
T Consensus 538 ~~~l~~~-~~i~lpldp~v~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~GDDLrQDqlV~Qii~lMd~LLk 616 (843)
T KOG0906|consen 538 HMNLLDV-RLIALPLDPDVLIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKKGDDLRQDQLVLQIIRLMDRLLK 616 (843)
T ss_pred ccccccc-eeeccCCCCCceEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEecCcchhHHHHHHHHHHHHHHHhc
Confidence 223444 48999999999999999999999999999999999999987 999999999999999999999999999999
Q ss_pred hcCCCceeeeeEEEEecCCCceeeeeccccHHHHHhccccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 005800 592 LENLDLHLTPYNVLATGQDEGLLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYIL 671 (676)
Q Consensus 592 ~~~ldl~l~~Y~Vl~t~~~~GlIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiL 671 (676)
++++|++++||+|+|||+..|++||||+.+++.|+.++++|..|+++.+|++.+++|+.+++++||++||||||||||||
T Consensus 617 kenlDLkLtpYkVLatg~~eG~vefI~s~~la~Ils~~~~I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitYIL 696 (843)
T KOG0906|consen 617 KENLDLKLTPYKVLATGPKEGFVEFIPSKPLARILSEYHSILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITYIL 696 (843)
T ss_pred cccccccceeeEEeccCCCcccEEeecCCcHHHHHHHHHHHHHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 005800 672 GIGDR 676 (676)
Q Consensus 672 GiGDR 676 (676)
|||||
T Consensus 697 GvGDR 701 (843)
T KOG0906|consen 697 GVGDR 701 (843)
T ss_pred cccCC
Confidence 99999
No 2
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-120 Score=1009.52 Aligned_cols=555 Identities=30% Similarity=0.508 Sum_probs=469.9
Q ss_pred CCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCcccccceEe
Q 005800 12 CDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITL 91 (676)
Q Consensus 12 ~dl~~~~~~ki~~leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~f 91 (676)
=|++.|++||+.+..+. .++......++|+++||||+++||..++|+.+++.+...||+|+.|
T Consensus 339 Wd~~~~frI~l~~is~~-----------------n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leF 401 (1076)
T KOG0904|consen 339 WDLDRPFRIKLVGISKV-----------------NLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEF 401 (1076)
T ss_pred HcCCCceEEEEeecccc-----------------CCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEe
Confidence 37788888888777663 2223344789999999999999999999999999888999999999
Q ss_pred cccccCcCccCceEEEEEeecC----------------CCCceeEeEEEEEeecccccccccceeeEeecCCCCCCCCCC
Q 005800 92 STKYRDLTAHSQLALTVWDVSC----------------GKDERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPT 155 (676)
Q Consensus 92 pi~~~dLP~~a~L~~ti~~~~~----------------~~~~~~vG~~~~~LFd~~~~Lr~G~~~l~lw~~~~~d~~~~~ 155 (676)
+|+++||||+|+|||.||++.. ++++.|+||+|++|||++++||+|.+.|++||..+.+ .
T Consensus 402 DI~i~DLPr~ArLc~~i~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~~p~~-~--- 477 (1076)
T KOG0904|consen 402 DIYIKDLPRMARLCLAIYAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMWPSVPDE-L--- 477 (1076)
T ss_pred eeecCCCChhhhheeeeeEeechhccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEecCCCCch-h---
Confidence 9999999999999999999841 2345799999999999999999999999999963322 1
Q ss_pred CCCCCCCCCchhhHHHHHHHHhhhhcccccccchhhhhhHHHHHHHHHhhhccCCCCceEEEEEeCCCC-ceeEeecCCC
Q 005800 156 STPGKVPKNERGELERLEKLINKYEREQIQRVDWLDRLTFKALEKIKEQENFRNGNSYLYLVVDFGRLE-HRVVFQDSGA 234 (676)
Q Consensus 156 ~~p~~~~~~~~~~~~rl~~l~~~~~~G~~~~~~wlD~l~~~~i~~~~~~~~~~~~~~~~~L~iefp~f~-~~vv~~~~~~ 234 (676)
+.+++ ..|.+.. +++..+++.+.|.||.+. +|+.||..+.
T Consensus 478 -----------------~e~l~--p~Gt~~~--------------------Np~ke~~~~~~i~f~~~~~~~~~yp~~~k 518 (1076)
T KOG0904|consen 478 -----------------GELLN--PKGTVRT--------------------NPNKENAASLSIKFPEYCPHPVYYPKLEK 518 (1076)
T ss_pred -----------------hhhcC--CCCcccC--------------------CCCcccchheeeeccccCCCCccCCchhh
Confidence 11222 1344332 234455788999999986 8888876531
Q ss_pred CCCCCCCccCCCcceeecCCCCCCCCchhHHHHHHHhhhccCCcccCCCCChHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 005800 235 NFLLPAPITSTNELVIVWDPEVGKINPSEHKQLKLARSLTRGIIDRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWK 314 (676)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~Dpe~~~~n~~e~k~~~l~rs~~~~~~d~~lkp~~~~~~~L~~i~~~~p~~~Lt~~ek~llW~ 314 (676)
+.++.. .-+++ ...|++..-..+.+++|++|+..+|+.+|+++||++||.
T Consensus 519 ----------------~~~~~~-----------~~~~~---~~~~~~~~~~e~~~kqLk~i~~~d~l~el~e~ekd~lW~ 568 (1076)
T KOG0904|consen 519 ----------------ILEPAA-----------DRERV---NRLDRESCGREKLRKQLKEILARDPLSELTEQEKDLLWH 568 (1076)
T ss_pred ----------------ccchhh-----------hhhhh---ccchhhhcccchhHHHHHHHHhcCCcccchHHHHHHHHH
Confidence 111111 00111 122233322346789999999999999999999999999
Q ss_pred hHHHhhh-chhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhHhhccCCCCCCHHHHHHHHHHHhcCChhHHHHHHH
Q 005800 315 FRFSLMS-EKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLL 393 (676)
Q Consensus 315 ~R~~l~~-~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~f~d~~VR~yAV~~L~~~~d~eL~~yLl 393 (676)
+|+++.. .|++||++|.||.|+++++|+|.+.||+.|++++|+.||||||++|+|+.||+|||+||++++||+|++||+
T Consensus 569 ~R~~~~~~~Pe~L~kLllsvkW~~redvAqmy~LL~~Wp~l~v~~aleLLd~nypD~~VR~fAV~~L~~Lsdd~l~~YLL 648 (1076)
T KOG0904|consen 569 LRHEILKHFPEALPKLLLSVKWNKREDVAQMYYLLKDWPPLSVELALELLDCNYPDPNVRAFAVRCLEQLSDDDLLQYLL 648 (1076)
T ss_pred HHHHHHHhChHHHHHHHheeeeccHHHHHHHHHHHhhCCCCCHHHHHHHhcCCCCcHHHHHHHHHHHHhcChhHHHHHHH
Confidence 9999965 599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCcchHHHHHHHHHhhhchhhHHHHHHHHHHHccCcchhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHH
Q 005800 394 QLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQS 473 (676)
Q Consensus 394 QLVQaLkyE~~~~s~La~FLi~Ral~n~~ig~~lfW~L~~E~~~~~~~~r~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 473 (676)
|||||||||+|++|.|++||++||++|.||||+|||+|++|++.+..+.|| +.+++++++ ++. .+.+.
T Consensus 649 qLVQalKyEpylds~L~rFLL~RAL~N~RIGHflFWhLRSEm~~~~~~~Rf----gllLEaYlR----Gc~----~hlk~ 716 (1076)
T KOG0904|consen 649 QLVQALKYEPYLDSALVRFLLKRALRNQRIGHFLFWHLRSEMAQPSVQQRF----GLLLEAYLR----GCT----HHLKV 716 (1076)
T ss_pred HHHHHHhccchhHhHHHHHHHHHHhhccccchhhhhhHHHHhccHHHHHHH----HHHHHHHHh----ccH----HHHHH
Confidence 999999999999999999999999999999999999999999999888887 667777773 332 56779
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCChhHHHHHHHHHHHhh--hhhcccCCCCcccCCCCceEEEEEecCcceeeccCCc
Q 005800 474 LVRQTELTAQLCSIMRDVGN--VRGNTQKKIEKLRQLLSGL--LSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALH 549 (676)
Q Consensus 474 l~~Q~~~i~~L~~i~~~vk~--~~~~~~~k~e~L~~~L~~~--~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~ 549 (676)
|.+|++++++|.+++..||. .+.++++-++.|+..+++. .+.+ +++..|+||+..+.++.+++|+||+||++
T Consensus 717 l~kQve~l~kLk~lt~~iK~~~~K~~~~~~~~~l~~~lr~~~~~~~l----q~l~sPLdP~~~lgel~iekckvM~Skkr 792 (1076)
T KOG0904|consen 717 LTKQVEALEKLKKLTDLIKLSAEKEDVSQVKEQLKLCLRQLANSEAL----QNLQSPLDPSLKLGELIIEKCKVMDSKKR 792 (1076)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhHHHHHHH----HhccCCCChhhhhcchhhhhhhhhhccCC
Confidence 99999999999999999993 2334444466777777642 2333 47899999999999999999999999999
Q ss_pred ceEEEEEecC---CCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCceeeeec-cccHHHH
Q 005800 550 PLRLTFRTAS---GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQI 625 (676)
Q Consensus 550 Pl~l~f~~~d---g~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I 625 (676)
|+||.|.+.+ +....+|||+|||||||||++||+++||+||+++|+|++|.||+|||||...||||+|+ |.|+++|
T Consensus 793 PLwl~~~Np~~~s~~~v~iIFKNGDDLRQDMLtLQmLriMd~iWk~~glDlrm~PYgcls~Gd~iGlIEVV~~s~TIa~I 872 (1076)
T KOG0904|consen 793 PLWLVFENPDAGSNLSVGIIFKNGDDLRQDMLTLQMLRIMDNIWKTEGLDLRMLPYGCLSTGDRIGLIEVVRNSETIANI 872 (1076)
T ss_pred ceEEEecCCCcccCCceeEEEcCCchHHHHHHHHHHHHHHHHHHHhcCCCeeccccccccccceeeeEEEecCchhhhhh
Confidence 9999998876 23789999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred Hhccc-----------cHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 626 LSEHR-----------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 626 ~~~~~-----------~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
+.+.| .+.+|++++|+.+.. + .+|++.|+.|||||||||||||||||
T Consensus 873 Q~~~g~~~at~afn~~~L~~WLKekNp~e~k-l---d~AIe~Ft~SCAGYcVATyVLGIgDR 930 (1076)
T KOG0904|consen 873 QLNTGNMAATAAFNKDALLNWLKEKNPGEDK-L---DAAIEEFTLSCAGYCVATYVLGIGDR 930 (1076)
T ss_pred hhccccceeeccCCHHHHHHHHhhcCchHHH-H---HHHHHHHHHhhccceeeeeeeccccc
Confidence 98743 689999999998642 3 68999999999999999999999999
No 3
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-102 Score=880.67 Aligned_cols=523 Identities=31% Similarity=0.481 Sum_probs=453.9
Q ss_pred CCCCceEEEEEEEeCCcccccceecccccC----CCCcccccceEecccccCcCccCceEEEEEeecCCC----------
Q 005800 50 ERRPELYVECALYIDGAPFGLPMRTRLESM----GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK---------- 115 (676)
Q Consensus 50 ~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~----~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~---------- 115 (676)
+..+++|..|+|+|||+.|+.|++|....+ .....|++||+||+.+|+|||+|+|++|+|++..+.
T Consensus 653 s~yedfyl~~~l~hg~k~l~~p~~t~k~~~~~~~F~ri~~d~~i~Fp~~i~~lPREt~L~~tL~G~~~~s~gan~d~n~e 732 (1639)
T KOG0905|consen 653 SQYEDFYLSCSLSHGTKDLDKPNQTPKTITSKHFFPRIPWDLYIKFPRQICQLPRETRLTVTLFGIVRASAGANADQNKE 732 (1639)
T ss_pred hhhhhheEEEeeecCceeccccccccccccccccccccchhhhhcchHHHhhCChhheEEEEEeeeecCCCCCCchhccc
Confidence 345799999999999999999998865443 345789999999999999999999999999974321
Q ss_pred --CceeEeEEEEEeecccccccccceeeEeecCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHhhhhcccccccchhhhh
Q 005800 116 --DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPTSTPGKVPKNERGELERLEKLINKYEREQIQRVDWLDRL 193 (676)
Q Consensus 116 --~~~~vG~~~~~LFd~~~~Lr~G~~~l~lw~~~~~d~~~~~~~p~~~~~~~~~~~~rl~~l~~~~~~G~~~~~~wlD~l 193 (676)
....+||++++|||++..+++|+.-|.+||........ ++|.-+ |
T Consensus 733 rr~~~~LGw~slpLfdf~~~m~cG~~ll~lw~~~~~~~l~---~~~~~~----------------~-------------- 779 (1639)
T KOG0905|consen 733 RRVPEALGWCSLPLFDFRRFMTCGPLLLPLWPSKKQNMLK---PFGAYP----------------Y-------------- 779 (1639)
T ss_pred ccchhhhheeeccccchhhhhcccchhhccccCCCCcCCC---CCCCCC----------------c--------------
Confidence 12479999999999999999999999999976543222 222110 0
Q ss_pred hHHHHHHHHHhhhccCCCCceEEEEEeCCCCceeEeecCCCCCCCCCCccCCCcceeecCCCCCCCCchhHHHHHHHhhh
Q 005800 194 TFKALEKIKEQENFRNGNSYLYLVVDFGRLEHRVVFQDSGANFLLPAPITSTNELVIVWDPEVGKINPSEHKQLKLARSL 273 (676)
Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~L~iefp~f~~~vv~~~~~~~~~~~~~~~~~~~~~~~~Dpe~~~~n~~e~k~~~l~rs~ 273 (676)
.....+.|.|+||...+.|.|+++..+. +.+.-||-
T Consensus 780 ---------------~qp~~~iLqidfp~~~~ei~fp~~~~d~----------~~~p~~df------------------- 815 (1639)
T KOG0905|consen 780 ---------------HQPDDPILQIDFPIWGFEIYFPNPQEDR----------QCIPHYDF------------------- 815 (1639)
T ss_pred ---------------cCCCCceEEEecCCCCceEecCCccccc----------ccccccch-------------------
Confidence 0123589999999999999999874321 11111211
Q ss_pred ccCCcccCCCCChHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHhhhchhhHhhhhccc-cCCCHHHHHHHHHHhcccC
Q 005800 274 TRGIIDRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSV-EWSDVQEAKQALELMGRWE 352 (676)
Q Consensus 274 ~~~~~d~~lkp~~~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv-~W~~~~e~~~a~~LL~~W~ 352 (676)
..+..+..+.|..|+.+..+..|++++|+++|.+|+||.++|.|||++|.|. +|+... +.+.|.||++|+
T Consensus 816 --------~tl~~e~q~~Lldl~qkq~~~~ls~edk~~lWekR~yc~~~p~aLPlVL~Sap~W~~~~-l~~~y~lL~~Wa 886 (1639)
T KOG0905|consen 816 --------ATLDIETQEKLLDLIQKQSTLTLSTEDKDLLWEKRLYCTNEPNALPLVLASAPSWDWGN-LMDVYQLLHQWA 886 (1639)
T ss_pred --------hhhhHHHHHHHHHHHhhccccccchhhHHHHHHHhhhhcCCCchhHHHHhcCCCCchhh-HHHHHHHHHhcc
Confidence 1123567888999999999999999999999999999999999999999877 677665 667799999999
Q ss_pred CCCHhhHhhccCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhcccCcchHHHHHHHHHhhhchhhHHHHHHHHH
Q 005800 353 MIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVS 432 (676)
Q Consensus 353 ~i~~~dALeLL~~~f~d~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~s~La~FLi~Ral~n~~ig~~lfW~L~ 432 (676)
++.|.+|||||.+.|+|++||+.||++|.++++|||..||||||||||||.|.+|+|++|||+||+.|.++||++||.|+
T Consensus 887 ~l~Pl~ALelL~~kfPDqeVR~~AVqwi~~ls~DeL~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~sl~~ah~lYWlLk 966 (1639)
T KOG0905|consen 887 PLRPLIALELLLPKFPDQEVRAHAVQWIARLSNDELLDYLPQLVQALKFELYLKSALVQFLLSRSLVSLQFAHELYWLLK 966 (1639)
T ss_pred ccCHHHHHHhhcccCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCcchhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhh
Q 005800 433 VEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGL 512 (676)
Q Consensus 433 ~E~~~~~~~~r~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q~~~i~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~ 512 (676)
-.++|.++..| |+.++++++. .+|..+++++.+|.++++.|..|++.||+.+++ .+.+.|+..|...
T Consensus 967 ~~l~d~qfs~r----Yq~ll~aLl~-------~~gk~L~~ef~~Q~~Lv~~L~~iae~Vr~as~s--~Rq~vL~~~l~~v 1033 (1639)
T KOG0905|consen 967 DALDDSQFSLR----YQNLLAALLD-------CCGKNLREEFKKQHKLVNELGSIAEDVRSASGS--ARQHVLRTGLGRV 1033 (1639)
T ss_pred hccccceeehH----HHHHHHHHHH-------HhCHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHhHHHH
Confidence 99999876544 6888888884 235689999999999999999999999998776 3566788888776
Q ss_pred hhhcccCCCCcccCCCCceEEEEEecCcceeeccCCcceEEEEEec--CCCeEEEEEEeCCchhHHHHHHHHHHHHHHHH
Q 005800 513 LSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPLRLTFRTA--SGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLL 590 (676)
Q Consensus 513 ~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~Pl~l~f~~~--dg~~~~~IfK~GDDLRQD~lvlQli~lmd~l~ 590 (676)
.+.+..- ..++||+.|+..++||.++.|++|+|+..|++|+|.+. +|..+++|||.|||||||||+||||++||+||
T Consensus 1034 ~~ff~~n-~tcrLPL~Pal~vkGv~i~~CSyFnSNA~PLKitFvnadp~geni~iIfK~gDDLRQDml~lQmI~iMdkIW 1112 (1639)
T KOG0905|consen 1034 DSFFLQN-NTCRLPLCPALDVKGVRIRECSYFNSNALPLKITFVNADPLGENISIIFKCGDDLRQDMLVLQMIRIMDKIW 1112 (1639)
T ss_pred HHHHHhC-CceecccCchheeccccccccccccCCCcceEEEEecCCCccccceeeeecCchHHHHHHHHHHHHHHHHHH
Confidence 5555432 37999999999999999999999999999999999994 58999999999999999999999999999999
Q ss_pred HhcCCCceeeeeEEEEecCCCceeeeec-cccHHHHHhccc--------cHHHHHHhhCCCCCCCCCchHHHHHHHHHHH
Q 005800 591 KLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEHR--------SIISYLQKFHPDEHGPFGITATCLETFIKSC 661 (676)
Q Consensus 591 ~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~~~--------~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~ 661 (676)
.++|||++|.+|+|+|||.+.||+|.|| ++||++|+.++| .|.+||.++|+++.+ | ++|.+||+.||
T Consensus 1113 l~egLDlrMViFrc~stG~~rgMvElVp~a~TLrKIQve~GltGsfkD~pla~WL~KhNp~e~e-Y---ekA~eNFiySC 1188 (1639)
T KOG0905|consen 1113 LQEGLDLRMVIFRCLSTGYDRGMVELVPNAETLRKIQVEEGLTGSFKDRPLAKWLMKHNPSEFE-Y---EKAVENFIYSC 1188 (1639)
T ss_pred HhcCCceeEEEEEeecccccccceeecccHHHHHHHHHHhccccccccchHHHHHHhcCCCHHH-H---HHHHHHHHHhc
Confidence 9999999999999999999999999999 999999999864 689999999999864 3 79999999999
Q ss_pred HHHHHHHHhhccCCC
Q 005800 662 AGYSVITYILGIGDR 676 (676)
Q Consensus 662 AgysV~tYiLGiGDR 676 (676)
|||||||||||||||
T Consensus 1189 AG~cVaTYVLGIcDR 1203 (1639)
T KOG0905|consen 1189 AGWCVATYVLGICDR 1203 (1639)
T ss_pred ccceeeeEeeecccc
Confidence 999999999999999
No 4
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=4.9e-52 Score=442.55 Aligned_cols=198 Identities=36% Similarity=0.638 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCceEEEEEecCcceeeccCCcce
Q 005800 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (676)
Q Consensus 472 ~~l~~Q~~~i~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~Pl 551 (676)
+++.+|++++++|.++++.||..+. .+|.+.|++.|++.. .+..+|++++||+||++.++||.+++|+||+|+++|+
T Consensus 2 ~~~~~Q~~~~~~L~~i~~~vk~~~~--~~r~~~l~~~L~~~~-~~~~~~~~~~lPldP~~~v~~i~~~~~~v~~S~~~Pl 78 (354)
T cd00895 2 EEFDRQCWLVNVLAKLAQQVREAAP--SARQGILREGLEEVK-QFFSINGSCRLPLSPSLLVKGIVPRDCSYFNSNAVPL 78 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHhhh-hhccCCCCCcCCCCCCeEEEEEEcCceEEecccCCCe
Confidence 5799999999999999999998763 467889999998865 5556677899999999999999999999999999999
Q ss_pred EEEEEecC--CCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCceeeeec-cccHHHHHhc
Q 005800 552 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE 628 (676)
Q Consensus 552 ~l~f~~~d--g~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~ 628 (676)
||+|++.| |+.+.+|||.||||||||+++|+|++||+||+++|+|++|+||+|+|||.++||||||| +.|+++|+++
T Consensus 79 ~l~f~~~d~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldl~l~pY~vl~tg~~~G~IE~V~ns~tl~~I~~~ 158 (354)
T cd00895 79 KLSFQNVDPLGENIRVIFKCGDDLRQDMLTLQMIRIMNKIWVQEGLDMRMVIFRCFSTGRGRGMVEMIPNAETLRKIQVE 158 (354)
T ss_pred EEEEEecCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCCceEEEEeCChhhHHHHHHH
Confidence 99999998 88999999999999999999999999999999999999999999999999999999999 8999999986
Q ss_pred cc--------cHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 629 HR--------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 629 ~~--------~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
+| .|.+||+++++++.++ .+|++||++|||||||+|||||||||
T Consensus 159 ~g~~g~~~~~~l~~~l~~~~~~~~~~----~~a~~nFi~S~AgYsV~tYiLgIgDR 210 (354)
T cd00895 159 HGVTGSFKDRPLADWLQKHNPTEDEY----EKAVENFIYSCAGCCVATYVLGICDR 210 (354)
T ss_pred hCcCcccccchHHHHHHHhCCChHHH----HHHHHHHHHHHHHHHHHHHHcccccc
Confidence 54 6999999999876543 68999999999999999999999999
No 5
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=100.00 E-value=1.7e-50 Score=392.86 Aligned_cols=167 Identities=38% Similarity=0.662 Sum_probs=160.7
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHhhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhHhhccCCC
Q 005800 287 AERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPV 366 (676)
Q Consensus 287 ~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~ 366 (676)
++|++|+.|+.+||++.||++||++||+||++|.++|+|||+||+||+|++++++++|+++|..|++++|+|||||||+.
T Consensus 2 ~~~~~l~~i~~~~pl~~L~~eek~llW~~R~~~~~~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLeLL~~~ 81 (171)
T cd00872 2 EEREQLEAIIARDPLSELTEEDKELLWKLRHECRKKPQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALELLDCN 81 (171)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhCcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhcccCcchHHHHHHHHHhhhchhhHHHHHHHHHHHccCcchhhhhHH
Q 005800 367 FESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKRFYS 446 (676)
Q Consensus 367 f~d~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~s~La~FLi~Ral~n~~ig~~lfW~L~~E~~~~~~~~r~~~ 446 (676)
|+|+.||+|||++|++++|++|.+||||||||||||++++|+|++|||+||++|++|||+|||+|++|++++.+..||
T Consensus 82 f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~~~ds~La~FLl~Ral~n~~igh~lfW~L~~E~~~~~~~~R~-- 159 (171)
T cd00872 82 FPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLKYEPYHDSDLVRFLLKRALRNQRIGHFFFWHLRSEMHNPSVSQRF-- 159 (171)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHhcCHHHHHHHHHHHHHhhcChHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887776
Q ss_pred HHHHHHHHHHh
Q 005800 447 THEILEESMMK 457 (676)
Q Consensus 447 ~~~~l~~~~~~ 457 (676)
+.+++.++.
T Consensus 160 --~~~le~~l~ 168 (171)
T cd00872 160 --GLLLEAYLR 168 (171)
T ss_pred --HHHHHHHHh
Confidence 566777663
No 6
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=100.00 E-value=1.8e-50 Score=391.75 Aligned_cols=159 Identities=58% Similarity=0.953 Sum_probs=156.8
Q ss_pred ccCCCCChHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHhhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhh
Q 005800 279 DRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCD 358 (676)
Q Consensus 279 d~~lkp~~~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~d 358 (676)
|+++||+++++++|+.|+.+||++.|+++||++||+||+++.++|+|||+||+||+|+++.++++|+++|..|++++|++
T Consensus 1 ~~~~~P~~~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~ 80 (166)
T cd00870 1 DKDLKPNSKERKELNKILKYPPTTKLTDEEKDLIWKFRFYLTNNKKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIED 80 (166)
T ss_pred CCCCCcCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHHhhCcHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhcccC-------cchHHHHHHHHHhhhchhhHHHHHHHH
Q 005800 359 ALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERS-------DKSRLSQFLVQRSSHNIELASFLRWYV 431 (676)
Q Consensus 359 ALeLL~~~f~d~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~-------~~s~La~FLi~Ral~n~~ig~~lfW~L 431 (676)
||||||+.|+|+.||+|||++|++++|++|.+||||||||||||++ ++|+|++|||+||++|++|||+|||+|
T Consensus 81 aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~~~~~~~~~~~s~La~fLl~Ral~s~~ig~~lfW~L 160 (166)
T cd00870 81 ALELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALKYENLDLSPLPRLDSPLADFLIERALKNPKLANFLYWYL 160 (166)
T ss_pred HHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred HHHccC
Q 005800 432 SVEFHD 437 (676)
Q Consensus 432 ~~E~~~ 437 (676)
++|+||
T Consensus 161 k~E~~d 166 (166)
T cd00870 161 KVELED 166 (166)
T ss_pred hhhccC
Confidence 999986
No 7
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=2.3e-49 Score=425.15 Aligned_cols=205 Identities=58% Similarity=0.940 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCceEEEEEecCcceeeccCCcce
Q 005800 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (676)
Q Consensus 472 ~~l~~Q~~~i~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~Pl 551 (676)
+.|.+|.+|+++|.+|++.+|..++++++|.+.|++.|++....+..++++++||+||++.|.+|.+++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~L~~i~~~~k~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~lP~dp~~~i~~i~~~~~~v~~S~~~P~ 81 (350)
T cd00896 2 QTLSRQIEFVDRLRKLLKELRSSKIDRPKKIEKLKQLLSSIEYELLLDFEPIPLPLDPSIEITGIIPEESSVFKSALMPL 81 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHhccccccccCCCCCcCCCCCCeEEEEEecCceEEeccccCce
Confidence 47999999999999999999998888889999999999886555455677999999999999999999999999999999
Q ss_pred EEEEEecCC---CeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCceeeeeccccHHHHHhc
Q 005800 552 RLTFRTASG---GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIPSRSLAQILSE 628 (676)
Q Consensus 552 ~l~f~~~dg---~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~s~tl~~I~~~ 628 (676)
+|+|.++|| +.|.+|||+||||||||+++|+|++||+||+++++|++|+||+|+|||+++|+||||++.|+++|+++
T Consensus 82 ~l~f~~~dg~~~~~~~~i~K~gDDLRqD~l~~Ql~~lm~~il~~~~ldl~l~~Y~Vip~~~~~GlIE~V~s~tl~~i~~~ 161 (350)
T cd00896 82 KLTFKTEKGNEEGEYPVIFKVGDDLRQDQLVIQIISLMDRLLKKENLDLKLTPYKVLATSPTDGLVEFIPSVTLASILKK 161 (350)
T ss_pred EEEEEeCCCCCCceEEEEecCCcchhHhHHHHHHHHHHHHHHHhCCCCceeEEEEEEEcCCCCcceEEEecccHHHHHHH
Confidence 999999999 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 629 HRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 629 ~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
++.|.+||+++++++..++|+..++++||++|||||||+|||||||||
T Consensus 162 ~~~l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDR 209 (350)
T cd00896 162 YGGILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDR 209 (350)
T ss_pred HHHHHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999998888777789999999999999999999999999
No 8
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=1.4e-49 Score=425.28 Aligned_cols=198 Identities=31% Similarity=0.534 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCceEEEEEecCcceeeccCCcce
Q 005800 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (676)
Q Consensus 472 ~~l~~Q~~~i~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~Pl 551 (676)
++|.+|++++++|.+++.+||..++++ +.+.|++.|++....+. .+.+++||+||++.|+||.+++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~L~~~~~~vk~~~~~~--~~~~l~~~l~~~~~~~~-~~~~~~lPl~P~~~i~~i~~~~~~v~~S~~~Pl 78 (354)
T cd05177 2 KEFSKETKLISILIDAAEKVKTASDTR--RKEVLKREASRLEDFFQ-DVVSCCLPLNPALRVKGIDADACSYFTSNAAPL 78 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChhH--HHHHHHHHHHHhhhhcc-CCCCCccCCCCCeEEEEEecCccEEehhhcCCC
Confidence 479999999999999999999886543 34468888887433222 245899999999999999999999999999999
Q ss_pred EEEEEecC--CCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCceeeeec-cccHHHHHhc
Q 005800 552 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE 628 (676)
Q Consensus 552 ~l~f~~~d--g~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~ 628 (676)
+|+|.+.| |+.|.+|||+|||||||++++|+|++||+||+++|+|++|+||+|+|||+++|+||||| +.|+++|+++
T Consensus 79 ~l~f~~~d~~~~~~~~IfK~gDDLRQD~l~lQli~lmd~i~~~~~ldl~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~ 158 (354)
T cd05177 79 KISFINANPLAKNISIIFKTGDDLRQDMLVLQIVRVMDNIWLQEGLDMQMIIYRCLSTGKTQGLVQMVPDAVTLAKIHRE 158 (354)
T ss_pred EEEEEecCCCCCeEEEEEeCCCcccHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCCceEEEEeCChHhHHHHHHh
Confidence 99999998 78999999999999999999999999999999999999999999999999999999999 8999999987
Q ss_pred c--------ccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 629 H--------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 629 ~--------~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
. ++|.+||+++++++..| .+|++||++|||||||+|||||||||
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~~----~~a~~nF~~S~AgysvvtYiLGigDR 210 (354)
T cd05177 159 SGLIGPLKENTIEKWFHMHNKLKEDY----DKAVRNFFHSCAGWCVVTFILGVCDR 210 (354)
T ss_pred hCCCcccchhhHHHHHHHhCCChHHH----HHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 4 37899999999877554 58999999999999999999999999
No 9
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=1.8e-49 Score=426.01 Aligned_cols=199 Identities=33% Similarity=0.583 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC---CChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCceEEEEEecCcceeeccCC
Q 005800 472 QSLVRQTELTAQLCSIMRDVGNVR---GNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSAL 548 (676)
Q Consensus 472 ~~l~~Q~~~i~~L~~i~~~vk~~~---~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~ 548 (676)
+.|.+|++++++|.++++.||..+ +++++|.+.|+++|++... ..+++++++|+||++.+.+|.+++|+||+|++
T Consensus 2 ~~l~~Q~~~~~~l~~~~~~ik~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~lPl~P~~~v~~i~~~~~~v~~Sk~ 79 (366)
T cd05165 2 KDLSKQVEALNKLKKLTDIIKSLSAKYDVKEQVKSQLEQVLRQLAN--LDLLQSFQSPLNPSLKLGELRIEKCKVMDSKK 79 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHcccch--hcccccCCCCCCCceeEeeeecCceEEehhhc
Confidence 369999999999999999999876 5678889999999977422 23456899999999999999999999999999
Q ss_pred cceEEEEEecC-----CCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCceeeeec-cccH
Q 005800 549 HPLRLTFRTAS-----GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSL 622 (676)
Q Consensus 549 ~Pl~l~f~~~d-----g~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl 622 (676)
+|++|+|++.| |+.|.+|||+||||||||+++|+|++||+||+++|+|++|+||+|+|||+++|+||||+ +.|+
T Consensus 80 ~P~~l~f~~~d~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~~~~~ldL~l~pY~vl~t~~~~GlIE~V~ns~tl 159 (366)
T cd05165 80 KPLWLVFENADPTALSNENVGIIFKNGDDLRQDMLTLQILRIMDSIWKEEGLDLRMLPYGCLSTGDKIGLIEVVRDSTTI 159 (366)
T ss_pred CCcEEEEEccCcccccCCceeEEEecCCcccHHHHHHHHHHHHHHHHHhCCCCceeEEEEEEEecCCceEEEEeCCchhH
Confidence 99999999998 58999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHhccc----------cHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 623 AQILSEHR----------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 623 ~~I~~~~~----------~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
++|+++++ .|.+||+++++++..+ .+|++||++|||||||+|||||||||
T Consensus 160 ~~I~~~~~~~~~~~f~~~~l~~wl~~~~~~~~~~----~~a~~nF~~S~AgysvvtYiLGigDR 219 (366)
T cd05165 160 ANIQQETGGNATAAFKKEALLHWLKEKNPTEEKL----DAAIEEFTLSCAGYCVATFVLGIGDR 219 (366)
T ss_pred HHHHHhcccccccccCcHHHHHHHHhhCCCHHHH----HHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99998753 5899999998865433 58999999999999999999999999
No 10
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=3.6e-49 Score=420.46 Aligned_cols=198 Identities=33% Similarity=0.574 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCceEEEEEecCcceeeccCCcc
Q 005800 471 WQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHP 550 (676)
Q Consensus 471 ~~~l~~Q~~~i~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~P 550 (676)
|++|.+|.++++.|.+++.+||..++++ +.+.|++.++...+.+. +++++||+||++.+.++.+++|+||+|+++|
T Consensus 1 r~~l~~Q~~~~~~L~~i~~~vk~~~~~~--~~~~l~~~~~~l~~~~~--~~~~~lPl~p~~~~~~~~~~~c~v~~S~~~P 76 (353)
T cd05176 1 REELEKQTRLVQLLGAVAEKVRQASSST--RQVVLQEGMERVQSFFQ--KNKCRLPLSPSLVAKELNIKVCSFFSSNAVP 76 (353)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHhhcC--CCCCCCCCCcceeEccEehheeEEecccCCc
Confidence 3579999999999999999999876553 33567777665443332 3479999999999999999999999999999
Q ss_pred eEEEEEecC--CCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCceeeeec-cccHHHHHh
Q 005800 551 LRLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILS 627 (676)
Q Consensus 551 l~l~f~~~d--g~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~ 627 (676)
+||+|.++| |+.|.+|||.||||||||+++|+|++||+||+++|+|++|+||+|+|||.++||||||| +.|+++|++
T Consensus 77 l~l~f~~~d~~g~~~~~ifK~gDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~ 156 (353)
T cd05176 77 LKIALVNADPLGEEINVMFKVGEDLRQDMLALQMIKIMDKIWLQEGLDLRMVIFKCLSTGKDRGMVELVPASETLRKIQV 156 (353)
T ss_pred eEEEEEccCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEEEcCCCceEEEEeCCcHhHHHHHH
Confidence 999999998 89999999999999999999999999999999999999999999999999999999999 999999998
Q ss_pred ccc--------cHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 628 EHR--------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 628 ~~~--------~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
+++ .|.+|++++++++.+| .+|++||++|||||||+|||||||||
T Consensus 157 ~~~~~~~~~~~~l~~~l~~~~~~~~~~----~~a~~nFi~S~AgYsv~tYiLGIgDR 209 (353)
T cd05176 157 EYGVTGSFKDKPLAEWLRKYNPAEEEY----EKASENFIYSCAGCCVATYVLGICDR 209 (353)
T ss_pred HhCcCCccccchHHHHHHHhCCChHHH----HHHHHHHHHHHHHHHHHhhhccccCc
Confidence 753 6899999999876554 58999999999999999999999999
No 11
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=7.1e-49 Score=418.89 Aligned_cols=197 Identities=31% Similarity=0.537 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC-CChhHH-HHHHHHHHHhhhhhcccCCCCcccCCCCceEEEEEecCcceeeccCCcc
Q 005800 473 SLVRQTELTAQLCSIMRDVGNVR-GNTQKK-IEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHP 550 (676)
Q Consensus 473 ~l~~Q~~~i~~L~~i~~~vk~~~-~~~~~k-~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~P 550 (676)
.|.+|++++++|.++++.||..+ +.+.++ .+.|++.|++. ++....+++++|+||++.+.+|.+++|+||+|+++|
T Consensus 3 ~l~~Q~~~~~~L~~~~~~ik~~~~~~~~k~~~~~l~~~l~~~--~~~~~~~~~~lPl~P~~~~~~i~~e~c~v~~S~~~P 80 (366)
T cd05175 3 HLSRQVEAMEKLINLTDILKQEKKDETQKVQMKFLVEQMRRP--DFMDALQGFTSPLNPAHQLGNLRLEECRIMSSAKRP 80 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhcCc--hhhhccCCCCCCCCCceEEEEEEeccceeechhcCC
Confidence 68999999999999999999876 444444 67788888653 222222589999999999999999999999999999
Q ss_pred eEEEEEecCC------CeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCceeeeec-cccHH
Q 005800 551 LRLTFRTASG------GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLA 623 (676)
Q Consensus 551 l~l~f~~~dg------~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~ 623 (676)
+||+|++.|+ ..|.+|||+|||||||++++|+|++||+||+++|+|++|+||+|+|||+++|+||||+ +.|++
T Consensus 81 l~l~f~~~d~~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~ 160 (366)
T cd05175 81 LWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQGLDLRMLPYGCLSIGDCVGLIEVVRNSHTIM 160 (366)
T ss_pred eEEEEEcCCcccccccCCcceEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEEEecCCceEEEEcCCchhHH
Confidence 9999999987 4689999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HHHhcc----------ccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 624 QILSEH----------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 624 ~I~~~~----------~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
+|+++. ..|.+|++++++++ .| .+|++||++|||||||+|||||||||
T Consensus 161 ~I~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~---~~a~~nF~~S~AgYsV~tYiLGIgDR 218 (366)
T cd05175 161 QIQCKGGLKGALQFNSHTLHQWLKDKNKGE--MY---DAAIDLFTRSCAGYCVATFILGIGDR 218 (366)
T ss_pred HHHhccccccccccCchhHHHHHhhcCCcH--HH---HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 998753 36899999988653 23 68999999999999999999999999
No 12
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=9.3e-49 Score=419.46 Aligned_cols=199 Identities=32% Similarity=0.590 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCC----ChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCceEEEEEecCcceeeccC
Q 005800 472 QSLVRQTELTAQLCSIMRDVGNVRG----NTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSA 547 (676)
Q Consensus 472 ~~l~~Q~~~i~~L~~i~~~vk~~~~----~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~ 547 (676)
++|.+|++++++|.+|+..||..+. .++++.+.|++.|++... + .+|+++++|+||++.+.+|.+++|+||+|+
T Consensus 2 ~~~~~q~~~~~~l~~i~~~vk~~~~~~~~~~~~~~~~l~~~l~~~~~-~-~~~~~~~lPl~P~~~~~~i~~~~~~v~~S~ 79 (365)
T cd00894 2 HDFTQQVQVIEMLQKVTLDIKSLSAEKYDVSSQVISQLKQKLENLQN-L-NLPESFRVPYDPGLRAGALVIEKCKVMASK 79 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhh-c-cCCCCCCCCCCCceEEEEEEcCceEEEccc
Confidence 4799999999999999999998653 345667889998877432 2 467899999999999999999999999999
Q ss_pred CcceEEEEEecCC-----CeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCceeeeec-ccc
Q 005800 548 LHPLRLTFRTASG-----GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRS 621 (676)
Q Consensus 548 ~~Pl~l~f~~~dg-----~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~t 621 (676)
++|+||+|++.|+ ..+.+|||+||||||||+++|+|++||+||+++|+|++|+||+|+|||.++||||||+ +.|
T Consensus 80 ~~Pl~l~f~~~d~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vi~tg~~~GlIE~V~ns~t 159 (365)
T cd00894 80 KKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATT 159 (365)
T ss_pred CCceEEEEECCCCCccCCCceeEEEeCCCcccHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEEecCCceEEEEcCCchh
Confidence 9999999999876 5799999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHhcc---------ccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 622 LAQILSEH---------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 622 l~~I~~~~---------~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
+++|+++. +.|.+||++++++++.+ .+|++||++|||||||+|||||||||
T Consensus 160 l~~I~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~----~~a~~nFi~S~AgYsV~tYiLGIgDR 219 (365)
T cd00894 160 IAKIQQSTVGNTGAFKDEVLSHWLKEKCPIEEKF----QAAVERFVYSCAGYCVATFVLGIGDR 219 (365)
T ss_pred HHHHHHhcccccccccchhHHHHHHHhCCCHHHH----HHHHHHHHHHhHHHHHHHHhccccCc
Confidence 99999763 25889999999876543 58999999999999999999999999
No 13
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.1e-48 Score=418.35 Aligned_cols=196 Identities=35% Similarity=0.658 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC--CCChhHHHHHHHHHHHhh--hhhcccCCCCcccCCCCceEEEEEecCcceeeccC
Q 005800 472 QSLVRQTELTAQLCSIMRDVGNV--RGNTQKKIEKLRQLLSGL--LSELTYFEEPIRSPLAPNILITGIVPSESSIFKSA 547 (676)
Q Consensus 472 ~~l~~Q~~~i~~L~~i~~~vk~~--~~~~~~k~e~L~~~L~~~--~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~ 547 (676)
+.|.+|.+++++|..|++.||.. +++++++.|.|+++|++. ...+ .++++|+||++.+.++.+++|+||+|+
T Consensus 2 ~~l~~q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~lPl~p~~~~~~~~~~~~~v~~Sk 77 (361)
T cd05174 2 KVLMKQGEALSKMKALNDFVKLSSQKATKPQTKEDMHVCMKQETYLEAL----SHLQSPLSPSIILCEVCVDQCTFMDSK 77 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhcCchhhhhh----ccCCCCCCCceEEEEEEcCcEEEEecc
Confidence 36999999999999999999987 467788899999999874 3333 368999999999999999999999999
Q ss_pred CcceEEEEEecC--CCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCceeeeec-cccHHH
Q 005800 548 LHPLRLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQ 624 (676)
Q Consensus 548 ~~Pl~l~f~~~d--g~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~ 624 (676)
++|++|+|++.| |+.|.+|||+||||||||+++|+|++||+||+++|+|++|+||+|+|||+++||||||+ +.|+++
T Consensus 78 ~~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~~Qli~lmd~i~k~~~ldL~l~pY~vi~tg~~~GlIE~V~ns~Tl~~ 157 (361)
T cd05174 78 MKPLWIMYKNEEAGGGSVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQEGLDLRMTPYGCLSTGDKTGLIEVVKNSDTIAN 157 (361)
T ss_pred CCceEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEecCCceEEEEeCCchhHHH
Confidence 999999999976 89999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHhcc-----------ccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 625 ILSEH-----------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 625 I~~~~-----------~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
|+++. ..+.+||+++++++ ++ .+|++||++|||||||+|||||||||
T Consensus 158 I~~~~~~~~~~~~f~~~~l~~~l~~~~~~~--~~---~~A~~nF~~S~AgysVvtYiLGIGDR 215 (361)
T cd05174 158 IQLNKSNMAATAAFNKDALLNWLKSKNPGD--AL---DQAIEEFTLSCAGYCVATYVLGIGDR 215 (361)
T ss_pred HHHhhcccchhccccchHHHHHHHhcCCcH--HH---HHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 98652 36899999988763 44 68999999999999999999999999
No 14
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=9e-48 Score=445.15 Aligned_cols=347 Identities=26% Similarity=0.388 Sum_probs=288.5
Q ss_pred HHHHHhHHHhhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhHhhccCCC-CCCHHHHHHHHHHHhcCChhHH
Q 005800 310 QLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPV-FESEEVRAYAVCILERADDDEL 388 (676)
Q Consensus 310 ~llW~~R~~l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~-f~d~~VR~yAV~~L~~~~d~eL 388 (676)
.++-..-.-+...|+||+.|+. |...++-+--..-+..|+|.+|..+|.+|.+. +.||.+-+||+++|+..+.++.
T Consensus 1292 ~~v~~~~~~~~~i~~al~~~~~---~~~~~~~~~dl~~~l~Wa~~~~~~~l~~l~p~~~~~p~~~~~~~~~l~s~~~~~~ 1368 (1803)
T KOG0902|consen 1292 RLVRFDPADLVHIPEALKLFVT---QKTTEESRSDLSHTLYWAPVSPLGVLDLLTPIRKPHPRLMQYAVRVLRSYSPNEM 1368 (1803)
T ss_pred HHhhcChhhhhccHHHHHHHhc---cCcccccccchhheeeccccCcccchhhcccccCCCcHHHHHHHHHHHhCChhhh
Confidence 3444555667778999998874 43222221112334469999999999999975 4799999999999999999999
Q ss_pred HHHHHHHHHHHhcccCcchHHHHHHHHHhhhchhhHHHHHHHHHHHccCcc--hh-hhhHHHHHHHHHHHHhhCCCCCCC
Q 005800 389 QCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPV--HA-KRFYSTHEILEESMMKLTPGVDGE 465 (676)
Q Consensus 389 ~~yLlQLVQaLkyE~~~~s~La~FLi~Ral~n~~ig~~lfW~L~~E~~~~~--~~-~r~~~~~~~l~~~~~~~l~~~~~~ 465 (676)
++|.||+||+|||+.. ...+.++|+-|.++.-+||+|.|+|++++.... .. ..+..++..+.+.++..+.+
T Consensus 1369 ~fyvPQiVq~lryDkm--~~v~~~il~~a~~s~l~aHqliWnm~~n~y~d~~~~~~~~~~~~l~~~~e~i~~~~s~---- 1442 (1803)
T KOG0902|consen 1369 LFYVPQIVQALRYDKM--GYVEEYILWAAGKSQLFAHQLIWNMKANLYVDEEAIVKADIGEILDRVREEITGSLSG---- 1442 (1803)
T ss_pred hhhhHHHHHHHhhcch--hHHHHHHHHHhhhhHHHHHHHHHHhhhhhccccccccchhHHHHHHHHHHHHHhcCCc----
Confidence 9999999999999986 677889999999999999999999999985322 22 35666677778888876654
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCceEEEEEecCcceeec
Q 005800 466 DGYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFK 545 (676)
Q Consensus 466 ~~~~~~~~l~~Q~~~i~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~ 545 (676)
.-++.+.|+.+|++++++|+..++..... ++|..++.+.|++++ + ...++||.+|+..|.+|+.+..+.+.
T Consensus 1443 ---~a~df~~rEf~ff~~vT~ISg~l~P~~k~-~erk~~i~~~l~kik--~---~~~~YlPs~P~~~v~~i~~~Sg~plQ 1513 (1803)
T KOG0902|consen 1443 ---PARDFYEREFDFFNKVTSISGKLKPYPKG-DERKKAILEELSKIK--V---QPGCYLPSNPDAVVLDIDYKSGTPLQ 1513 (1803)
T ss_pred ---hhhHHHHHHhHHHHHhhhccceeecCCCc-HHHHHHHHHHHHhhc--c---cCceecCCCCCceEEEeecCCCccch
Confidence 34568999999999999999999987544 556667777777643 2 24799999999999999999999999
Q ss_pred c-CCcceEEEEEe----cCCC----eE------EEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCC
Q 005800 546 S-ALHPLRLTFRT----ASGG----TC------KMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQD 610 (676)
Q Consensus 546 S-~~~Pl~l~f~~----~dg~----~~------~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~ 610 (676)
| ++.|.+.+|+. .||. .- ..|||.|||+|||+|++|+|++|.+||+..|||+++-||+|+||+++
T Consensus 1514 S~aK~PfmatF~vkr~~~~g~~~~~k~~~~~WQa~IFKvGDDcRQD~LaLQiislf~~if~~~gLd~~lfPYrV~aT~pG 1593 (1803)
T KOG0902|consen 1514 SAAKAPFMATFKVKRLEKDGLQCRSKSQKISWQAAIFKVGDDCRQDMLALQIISLFKNIFQLVGLDLYLFPYRVVATAPG 1593 (1803)
T ss_pred hhccCCeeEEEeeeeccCCcccccccccchhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHcCCceEEeeeeeeccCCC
Confidence 9 58999999998 4553 11 48999999999999999999999999999999999999999999999
Q ss_pred Cceeeeec-cccHHHHHhc-cccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 611 EGLLEFIP-SRSLAQILSE-HRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 611 ~GlIE~V~-s~tl~~I~~~-~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
||+||+|| +.+-+++-++ .+++++||..+|+++.+. + .++|+.||++|+|||||++|+|+++||
T Consensus 1594 cGVIEviPn~~SRdqlGr~t~~glyeyF~~~~G~~~s~-~-fq~Ar~NF~~S~A~Ysv~s~lLq~KDR 1659 (1803)
T KOG0902|consen 1594 CGVIEVIPNSKSRDQLGRETDNGLYEYFTRKYGDESSE-A-FQTARYNFVRSMAGYSVLSYLLQIKDR 1659 (1803)
T ss_pred CceEEeCCCCccHHHhcccccccHHHHHHHhcCccchH-H-HHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 99999999 7787777665 578999999999987532 2 279999999999999999999999998
No 15
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=2e-48 Score=417.51 Aligned_cols=197 Identities=32% Similarity=0.594 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCC--ChhHHHHHHHHHHHhh-hhhcccCCCCcccCCCCceEEEEEecCcceeeccCC
Q 005800 472 QSLVRQTELTAQLCSIMRDVGNVRG--NTQKKIEKLRQLLSGL-LSELTYFEEPIRSPLAPNILITGIVPSESSIFKSAL 548 (676)
Q Consensus 472 ~~l~~Q~~~i~~L~~i~~~vk~~~~--~~~~k~e~L~~~L~~~-~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~ 548 (676)
+.|.+|++++++|.++++.||..++ +++++++.|++.|++. ..+.. ++++||+||++.+.+|.+++|+||+|++
T Consensus 2 ~~l~~Q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~lPldP~~~v~~i~~~~~~v~~S~~ 78 (362)
T cd05173 2 KVLSKQVEALNKLKTLNSLIKLNAVKLSKAKGKEAMHTCLRQSAYREAL---SDLQSPLNPSIILSELNVEKCKYMDSKM 78 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhcccchhcc---cCCCCCCCCceEEEEEEcCceEEecccC
Confidence 3689999999999999999998654 6788899999999874 33332 4899999999999999999999999999
Q ss_pred cceEEEEEec--CCCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCceeeeec-cccHHHH
Q 005800 549 HPLRLTFRTA--SGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQI 625 (676)
Q Consensus 549 ~Pl~l~f~~~--dg~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I 625 (676)
+|+||+|.+. +|+.|.+|||+||||||||+++|+|++||+||+++|+|++|+||+|+|||+++|+||||+ +.|+++|
T Consensus 79 ~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~k~~~ldL~l~pY~vi~t~~~~GlIE~V~ns~tl~~I 158 (362)
T cd05173 79 KPLWIVYNNKLFGGDSLGIIFKNGDDLRQDMLTLQILRLMDTLWKEAGLDLRIVPYGCLATGDRSGLIEVVSSAETIADI 158 (362)
T ss_pred CCeEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeCCchhHHHH
Confidence 9999999886 688999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred Hhcc-----------ccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 626 LSEH-----------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 626 ~~~~-----------~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
+.+. .+|.+||+++++++ +| .+|++||++|||||||+|||||||||
T Consensus 159 ~~~~~~~~~~~~f~~~~l~~~l~~~~~~~--~~---~~a~~nF~~S~AgYsvvtYILGIGDR 215 (362)
T cd05173 159 QLNSSNVAAAAAFNKDALLNWLKEYNSGD--DL---ERAIEEFTLSCAGYCVATYVLGIGDR 215 (362)
T ss_pred HHhccccchhcccChhHHHHHHHhcCCcH--HH---HHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 8542 36899999887653 33 68999999999999999999999999
No 16
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=1.1e-47 Score=412.14 Aligned_cols=197 Identities=39% Similarity=0.625 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCceEEEEEecCcceeeccCCcce
Q 005800 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (676)
Q Consensus 472 ~~l~~Q~~~i~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~Pl 551 (676)
++|.+|++++++|.+|+..||..++ .++.+.|++.|++..+.. ++.++++|+||++.+.+|.+++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~l~~i~~~vk~~~~--~~~~~~l~~~l~~~~~~~--~~~~~~lP~~p~~~~~~i~~~~~~v~~S~~~P~ 77 (353)
T cd05166 2 EEFKKQHKLVNKLGSIAEDVKSASE--SARQHVLRTGLGRVDSFL--LQNKCRLPLNPALDVKGIDVRECSYFNSNALPL 77 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCch--HHHHHHHHHHHHhhhhhc--cCCCCccCCCCceEEEeEEcCceEEeccccCce
Confidence 4799999999999999999998764 467789999998754432 245899999999999999999999999999999
Q ss_pred EEEEEecC--CCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCceeeeec-cccHHHHHhc
Q 005800 552 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE 628 (676)
Q Consensus 552 ~l~f~~~d--g~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~ 628 (676)
+|+|.+.| |+.|.+|||+|||||||++++|+|++||+||+++|+|++|+||+|+|||+++||||||+ +.|+++|+++
T Consensus 78 ~l~f~~~d~~g~~~~~i~K~gDDLRQD~l~~Qli~lm~~i~~~~~ldL~l~~Y~vip~~~~~GlIE~V~ns~tl~~I~~~ 157 (353)
T cd05166 78 KISFVNADPMGENISVIFKAGDDLRQDMLVLQMINIMDKIWLQEGLDLRMITFRCLSTGYDRGMVELVPDAETLRKIQVE 157 (353)
T ss_pred EEEEEecCCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCceeEEEEEEEcCCCcceEEEeCCchhHHHHHHH
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999 9999999987
Q ss_pred cc--------cHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 629 HR--------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 629 ~~--------~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
++ .|.+||.++++++.+| .+|++||++|||||||+|||||||||
T Consensus 158 ~g~~~~~~~~~l~~~l~~~~~~~~~~----~~a~~nF~~S~A~ysvv~YiLgigDR 209 (353)
T cd05166 158 EGLTGSFKDRPIAKWLMKHNPSELEY----EKAVENFIYSCAGCCVATYVLGICDR 209 (353)
T ss_pred hCccccccchhHHHHHHHhCCChHHH----HHHHHHHHhHHHHHHHHHHHhhcccc
Confidence 54 6899999999887655 58999999999999999999999999
No 17
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=2.5e-47 Score=409.92 Aligned_cols=197 Identities=38% Similarity=0.667 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCceEEEEEecCcceeeccCCcce
Q 005800 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (676)
Q Consensus 472 ~~l~~Q~~~i~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~Pl 551 (676)
+.|.+|++|+++|.+|+..||.. +++++|.+.|++.|++... .+++++++|+||++.+.+|++++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~l~~i~~~ik~~-~~~~~~~~~l~~~L~~~~~---~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~~P~ 77 (352)
T cd00891 2 SELLKQVEVINELKTLAKKVKRE-KSKSQRKELLREELKKLEN---NLPQEFTLPLDPRLEIKGLIIEKCKVMDSKKKPL 77 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHhhhhc---cCCCCccCCCCCceEEEEEeccceEEeccccCCc
Confidence 47999999999999999999987 4567889999999988543 3467899999999999999999999999999999
Q ss_pred EEEEEecC--CCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCceeeeec-cccHHHHHhc
Q 005800 552 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE 628 (676)
Q Consensus 552 ~l~f~~~d--g~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~ 628 (676)
+|+|.++| |+.|.+|||+|||||||++++|+|++||+||+++++|++|+||+|+|||+++||||||+ +.|+++|+++
T Consensus 78 ~l~f~~~d~~g~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~ns~tl~~I~~~ 157 (352)
T cd00891 78 WLVFKNADPSGEPIKVIFKVGDDLRQDMLTLQMIRLMDKIWKKEGLDLRMTPYGCIATGDGVGMIEVVPNSETIAKIQKK 157 (352)
T ss_pred EEEEEecCCCCCEEEEEeccCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeCCCccHHHHHHh
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999 9999999987
Q ss_pred cc---------cHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 629 HR---------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 629 ~~---------~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
++ .|.+|++++++++..| .+|++||++|||||||+|||||||||
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~a~~nF~~S~A~ysv~~YiLgigDR 210 (352)
T cd00891 158 AGGVGGAFKDNPLMNWLKKKNKGEEDY----EKAVENFTYSCAGYCVATYVLGIGDR 210 (352)
T ss_pred cCccccccccchHHHHHHHhCCCHHHH----HHHHHHHhhhHHHHHHHHHHcccccc
Confidence 53 5889999999887555 58999999999999999999999999
No 18
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=100.00 E-value=2.3e-47 Score=376.85 Aligned_cols=176 Identities=43% Similarity=0.727 Sum_probs=157.5
Q ss_pred cCCCCChHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHhhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhH
Q 005800 280 RDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDA 359 (676)
Q Consensus 280 ~~lkp~~~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dA 359 (676)
+|+||+.+++++|+.|+++||+.+|+++||+++|+||+++.++|+|||+||+||+|++++++++++++|..|++++|++|
T Consensus 1 ~~~~p~~~~~~~L~~i~~~~p~~~L~~~ek~~lW~~R~~l~~~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~A 80 (184)
T PF00613_consen 1 KDLKPNEEERDQLEAIINKDPLQELTEEEKELLWKYRYYLMNNPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDA 80 (184)
T ss_dssp -TS---HHHHHHHHHHHTS-TTSSS-HHHHHHHHHTHHHHTTSGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcCCCccCCHHHHHHHHHCCHHhhhCchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhcccCcchHHHHHHHHHhhhchhhHHHHHHHHHHHccCcc
Q 005800 360 LELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPV 439 (676)
Q Consensus 360 LeLL~~~f~d~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~s~La~FLi~Ral~n~~ig~~lfW~L~~E~~~~~ 439 (676)
|+||+++|+|+.||+|||++|++++|++|.+||||||||||||++++|+|++|||+||++|++|||+|||+|++|++++.
T Consensus 81 L~LL~~~f~~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaLr~e~~~~s~L~~fLl~ra~~s~~ia~~l~W~L~~e~~~~~ 160 (184)
T PF00613_consen 81 LELLSPNFPDPFVRQYAVRRLESLSDEELLFYLPQLVQALRYEPYHDSPLARFLLRRALKSPRIAHQLFWYLKAELHDPE 160 (184)
T ss_dssp HHCTSTT---HHHHHHHHHHHCTS-HHHHHHHHHHHHHHGGGSSSSS-HHHHHHHHHHHHSHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHheeccccccHHHHHHHHHHHhCHHHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHhhC
Q 005800 440 HAKRFYSTHEILEESMMKLT 459 (676)
Q Consensus 440 ~~~r~~~~~~~l~~~~~~~l 459 (676)
+..|| +.+.++++..+
T Consensus 161 ~~~r~----~~~~~~~l~~~ 176 (184)
T PF00613_consen 161 YSERY----QLLLEAFLDGC 176 (184)
T ss_dssp HHHHH----HHHHHHHHHHS
T ss_pred HHHHH----HHHHHHHHHHH
Confidence 76665 55666766543
No 19
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=100.00 E-value=4e-47 Score=367.31 Aligned_cols=165 Identities=35% Similarity=0.487 Sum_probs=154.5
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHhhhchhhHhhhhccc-cCCCHHHHHHHHHHhcccCCCCHhhHhhccCC
Q 005800 287 AERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSV-EWSDVQEAKQALELMGRWEMIDVCDALELLSP 365 (676)
Q Consensus 287 ~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv-~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~ 365 (676)
+++++|+.|+.++|+.+||++||++||++|++|.++|+|||+||+|+ +|++ .++.++++||+.|+|++|++|||||++
T Consensus 2 ~~~~~L~~i~~~~p~~~l~~~ek~llW~~R~~~~~~p~aLp~~L~s~~~w~~-~~~~e~~~LL~~W~p~~p~~ALeLL~~ 80 (169)
T cd00869 2 ETQEKLLDLIQKQSTYTLSTEDKDLLWEKRLYCTNEPNALPLVLASAPSWDW-ANLMDVYQLLHQWAPLRPLIALELLLP 80 (169)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhCcHHHHHHHHhcccCcH-HHHHHHHHHHhCCCCCCHHHHHHHcCC
Confidence 46788999999999999999999999999999999999999999987 6765 679999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhcccCcchHHHHHHHHHhhhchhhHHHHHHHHHHHccCcchhhhhH
Q 005800 366 VFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKRFY 445 (676)
Q Consensus 366 ~f~d~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~s~La~FLi~Ral~n~~ig~~lfW~L~~E~~~~~~~~r~~ 445 (676)
.|+|+.||+|||++|++++||+|.+||||||||||||++++|+|++|||+||+.|++|||+|||+|++|+|++.+..++
T Consensus 81 ~f~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLkyE~~~~s~L~~FLl~RAl~n~~i~h~lfW~Lk~e~~~~~~~~~~- 159 (169)
T cd00869 81 KFPDQEVRAHAVQWLARLSNDELLDYLPQLVQALKFELYLKSALVRFLLSRSLVSLRFAHELYWLLKDALDDCYFSSAY- 159 (169)
T ss_pred cCCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccccCcChHHHHHHHHHhcCHHHHHHHHHHhHHHccCchHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875554
Q ss_pred HHHHHHHHHHH
Q 005800 446 STHEILEESMM 456 (676)
Q Consensus 446 ~~~~~l~~~~~ 456 (676)
+.+.+.+.
T Consensus 160 ---~~l~~a~~ 167 (169)
T cd00869 160 ---QDLGAALR 167 (169)
T ss_pred ---HHHHHHHh
Confidence 55666554
No 20
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=100.00 E-value=3e-46 Score=368.13 Aligned_cols=169 Identities=47% Similarity=0.753 Sum_probs=160.3
Q ss_pred ChHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHh-hhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhHhhcc
Q 005800 285 SNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSL-MSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELL 363 (676)
Q Consensus 285 ~~~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~l-~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL 363 (676)
+.+++++|+.|+++||++.|+++||+++|+||+++ +++|+|||+||+||+|+++.++++++++|..|++++|++|||||
T Consensus 4 ~~~~~~~l~~i~~~~p~~~l~~eek~llW~~R~~~l~~~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~LL 83 (184)
T smart00145 4 NIEERDRLEAILKLDPTYELTAEEKDLIWKFRHYYLTNNPKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALELL 83 (184)
T ss_pred CHHHHHHHHHHHhCCCcccCCHHHHHHHHHChHHHHhcChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 56889999999999999999999999999999776 58999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhcccCcchHHHHHHHHHhhhchhhHHHHHHHHHHHccCcchhhh
Q 005800 364 SPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKR 443 (676)
Q Consensus 364 ~~~f~d~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~s~La~FLi~Ral~n~~ig~~lfW~L~~E~~~~~~~~r 443 (676)
++.|+|+.||+|||++|++++||+|.+||||||||||||++++|+|++|||+||++|++|||+|||+|++|++++.+..|
T Consensus 84 ~~~~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr~E~~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~~~~~~~~r 163 (184)
T smart00145 84 SPKFPDPFVRAYAVERLESASDEELLLYLLQLVQALKYEPYLDSALARFLLERALKNQRLGHFFYWYLKSELEDPHYSIR 163 (184)
T ss_pred CccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHccCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887666
Q ss_pred hHHHHHHHHHHHHh
Q 005800 444 FYSTHEILEESMMK 457 (676)
Q Consensus 444 ~~~~~~~l~~~~~~ 457 (676)
| +.+++.++.
T Consensus 164 ~----~~~le~~l~ 173 (184)
T smart00145 164 F----GLLLEAYLR 173 (184)
T ss_pred H----HHHHHHHHH
Confidence 5 556666664
No 21
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=100.00 E-value=9.5e-43 Score=333.95 Aligned_cols=151 Identities=46% Similarity=0.746 Sum_probs=147.8
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHhhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhHhhccCCC
Q 005800 287 AERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPV 366 (676)
Q Consensus 287 ~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~ 366 (676)
.+++.+..|+.++|+++++++||+++|++|+++.++|++||+||+||+|++++++.+++++|..|++++|++||+||++.
T Consensus 2 ~~~~~l~~i~~~~p~~~l~~~ek~llw~~R~~~~~~p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL~LL~~~ 81 (152)
T cd00864 2 WERKPLLAILLYPPFSTLTEEEKELLWKFRYYLLNVPKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDALELLSPK 81 (152)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhChHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCCc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhcccCcchHHHHHHHHHhhhchhhHHHHHHHHHHHccC
Q 005800 367 FESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHD 437 (676)
Q Consensus 367 f~d~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~s~La~FLi~Ral~n~~ig~~lfW~L~~E~~~ 437 (676)
|+|+.||+|||++|++++|++|.+||||||||||||++++|+|++|||+||++|+.|||+|||+|++|+++
T Consensus 82 ~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLkye~~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~~~ 152 (152)
T cd00864 82 YPDPVVRQYAVRVLESASDDELLLYLPQLVQALKYEPYLDSYLARFLLERALKSQRLGHQLYWNLKSEIHD 152 (152)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975
No 22
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=3.9e-41 Score=355.40 Aligned_cols=150 Identities=38% Similarity=0.597 Sum_probs=138.9
Q ss_pred ccCCCCceEEEEEecCcceeeccC-CcceEEEEEecCCC-------------eEEEEEEeCCchhHHHHHHHHHHHHHHH
Q 005800 524 RSPLAPNILITGIVPSESSIFKSA-LHPLRLTFRTASGG-------------TCKMIFKKGDDIRQDQLVVQMVSLMDRL 589 (676)
Q Consensus 524 ~lPldP~~~i~~i~~~~~~v~~S~-~~Pl~l~f~~~dg~-------------~~~~IfK~GDDLRQD~lvlQli~lmd~l 589 (676)
+||+||++.|.+|.+++|++|+|+ ++|++++|++.|+. .+.+|||+||||||||+++|+|++||+|
T Consensus 1 ylP~~P~~~v~~i~~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~gDDLRQD~l~~Qli~lm~~i 80 (311)
T cd05167 1 YLPSNPDYVIVGIDYKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVGDDCRQDMLALQLISLFKNI 80 (311)
T ss_pred CCCCCCceEEEEEEccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCCCCccHHHHHHHHHHHHHHH
Confidence 589999999999999999999997 78999999998754 4899999999999999999999999999
Q ss_pred HHhcCCCceeeeeEEEEecCCCceeeeec-cccHHHHHhc-cccHHHHHHhhCCCCCC-CCCchHHHHHHHHHHHHHHHH
Q 005800 590 LKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE-HRSIISYLQKFHPDEHG-PFGITATCLETFIKSCAGYSV 666 (676)
Q Consensus 590 ~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~-~~~l~~~l~~~~~~~~~-~~~~~~~a~~nFi~S~AgysV 666 (676)
|+++|+|++|+||+|+|||+++||||||+ +.|+++|.+. .+.+.+||.++++++.. .| .+|++||++|||||||
T Consensus 81 ~~~~~ldl~l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~~~~~l~~~f~~~~~~~~~~~~---~~a~~nF~~S~Agysv 157 (311)
T cd05167 81 FQSAGLDLYLFPYRVVATGPGCGVIEVVPNSKSRDQIGRTTDNGLYEYFTSKYGDESSLAF---QKARENFIRSMAAYSL 157 (311)
T ss_pred HHHCCCCeEeEEEeEEecCCCceEEEEeCCcHHHHHHHhhcccHHHHHHHHHcCCCCcHHH---HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999999876 46899999999876432 22 5899999999999999
Q ss_pred HHHhhccCCC
Q 005800 667 ITYILGIGDR 676 (676)
Q Consensus 667 ~tYiLGiGDR 676 (676)
+|||||||||
T Consensus 158 ~tYiLgigDR 167 (311)
T cd05167 158 ISYLLQIKDR 167 (311)
T ss_pred HHHHhhcccc
Confidence 9999999999
No 23
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=100.00 E-value=2.5e-38 Score=305.60 Aligned_cols=145 Identities=47% Similarity=0.791 Sum_probs=132.2
Q ss_pred CCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeec
Q 005800 33 KSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVS 112 (676)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~ 112 (676)
++|.+++ .+++.++.+++||+|||||||+|||.|++|+|++|++.+.|||||+|||+|+|||++|+||||||++.
T Consensus 15 ~~p~l~~-----~~~~~~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~ 89 (159)
T cd08397 15 EDPVLRF-----SGSNVSPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVS 89 (159)
T ss_pred CCchhhh-----hccccCCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEec
Confidence 4555444 66777788999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceeEeEEEEEeecccccccccceeeEeecCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHhhhhccc
Q 005800 113 CGKDERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPTSTPGKVPKNERGELERLEKLINKYEREQ 183 (676)
Q Consensus 113 ~~~~~~~vG~~~~~LFd~~~~Lr~G~~~l~lw~~~~~d~~~~~~~p~~~~~~~~~~~~rl~~l~~~~~~G~ 183 (676)
+++++.+|||+|++|||++|+||+|.+.|++||+.++|+..+++ +++.+++.++||+|||+++|||++|+
T Consensus 90 ~~~~~~~vg~~~~~lFd~~g~Lr~G~~~l~lw~~~~~d~~~~t~-~~~~~~~~~~el~rLekl~kkye~G~ 159 (159)
T cd08397 90 GTGKAVPFGGTTLSLFNKDGTLRRGRQKLRVWPDVEADGSIPTS-TGKSPDSERDELDRLEKLLKKYERGE 159 (159)
T ss_pred CCCCceEEEEEEEeeECCCCcEecCCEEEEEEeCCCCCCccccC-CCCccCcchhhHHHHHHHHHHhhcCC
Confidence 87778999999999999999999999999999999999998877 44455667899999999999999995
No 24
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=100.00 E-value=4.3e-35 Score=284.84 Aligned_cols=143 Identities=21% Similarity=0.380 Sum_probs=134.5
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHhHHHhhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhHhhccCCCCC-C
Q 005800 291 SIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFE-S 369 (676)
Q Consensus 291 ~L~~i~~~~p~~~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~f~-d 369 (676)
.+..+.+++ +..|+.+++++||++|+.+.++|+||++|| +|++..++.++++.|..|+|++|++|||||++.|+ |
T Consensus 9 av~l~~Rfp-~~~l~~e~~~Lv~~~p~~~~~~p~AL~~~l---~~~~~~~~~~~l~~Ll~W~pi~p~~ALell~~~y~~~ 84 (175)
T cd00871 9 AIHLPSRFP-NSKLKSEVTRLVRKHPLAVVKIPEALPFLV---TGKSVDENSPDLKYLLYWAPVSPVQALSLFTPQYPGH 84 (175)
T ss_pred HHHHHHhCC-ChhhhHHHHHHHHHCHHHHhcCHHHHHHHh---CccChhhHHHHHHHHcCCCCCCHHHHHHHhCcccCCC
Confidence 456677777 889999999999999999999999999997 69999999888888889999999999999999999 7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHhcccCcchHHHHHHHHHhhhchhhHHHHHHHHHHHccCcc
Q 005800 370 EEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPV 439 (676)
Q Consensus 370 ~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~s~La~FLi~Ral~n~~ig~~lfW~L~~E~~~~~ 439 (676)
+.||+|||++|+++++|++.+||||||||||||. ++.|++|||+||..|..|||+|||+|++|++++.
T Consensus 85 ~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~--~~~l~~FLl~~A~~s~~faHql~W~lkae~~~de 152 (175)
T cd00871 85 PLVLQYAVRVLESYPVETVFFYIPQIVQALRYDK--MGYVEEYILETAKRSQLFAHQIIWNMQTNCYKDE 152 (175)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHhhhHHHHHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999997 5899999999999999999999999999997654
No 25
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=1.6e-33 Score=295.47 Aligned_cols=139 Identities=32% Similarity=0.503 Sum_probs=125.7
Q ss_pred EecCcceeeccC-CcceEEEEEecCCC--eEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCc
Q 005800 536 IVPSESSIFKSA-LHPLRLTFRTASGG--TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEG 612 (676)
Q Consensus 536 i~~~~~~v~~S~-~~Pl~l~f~~~dg~--~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~G 612 (676)
|.+-+++++.|+ +.|.++.|...||+ .+.+|||+|||||||++++|+|++||+||+++++|++|+||+|+|||+++|
T Consensus 3 ~~~~~~k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~l~l~l~~Y~vi~~s~~~G 82 (289)
T cd00893 3 KIYISPKILQSALKIPYLELKKLTDSTLINSEFIVKCGDDLRQDILATQIITELQKIFELMFLDLWLNPYLVLPVSKTGG 82 (289)
T ss_pred cccccchHHHHhhcCchhhccCccCCCCeeEEEEEECCCcccHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCce
Confidence 556778999998 57999999998875 899999999999999999999999999999999999999999999999999
Q ss_pred eeeeec-cccHHHHHhcc-ccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 613 LLEFIP-SRSLAQILSEH-RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 613 lIE~V~-s~tl~~I~~~~-~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
+||||+ +.|+++|++++ +++.+||.+.++++... ...+|++||++|||||||+|||||||||
T Consensus 83 lIE~V~ns~tl~~i~~~~~~~l~~~~~~~~~~~~~~--~~~~a~~nF~~SlA~ySvv~YiLgigDR 146 (289)
T cd00893 83 IIEFIPNSISIHEIKKQQINSLYDYFLELYGSYTTE--AFLQARYNFIESMAGYSLLCYLLQIKDR 146 (289)
T ss_pred eEEEeCCchhHHHHHHhccccHHHHHHHHcCCCCcH--HHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999 99999999875 57999999888754321 0148999999999999999999999999
No 26
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=7.2e-33 Score=284.22 Aligned_cols=137 Identities=28% Similarity=0.522 Sum_probs=129.2
Q ss_pred EEecCcceeeccCCcceEEEEEecCCCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhc----CCCceeeeeEEEEecCC
Q 005800 535 GIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQD 610 (676)
Q Consensus 535 ~i~~~~~~v~~S~~~Pl~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~----~ldl~l~~Y~Vl~t~~~ 610 (676)
++. ++++|++|+++|++++|.++||+.|.+|+|.|||||||++++|++++||.+|+++ +++++++||+|+|+|++
T Consensus 3 ~~~-~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~~~ 81 (237)
T cd00892 3 GFE-DEVEILNSLQKPKKITLIGSDGNSYPFLCKPKDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLNEE 81 (237)
T ss_pred ccc-CeEEEEeccCCceEEEEEcCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcCCC
Confidence 444 6799999999999999999999999999999999999999999999999999998 89999999999999999
Q ss_pred Cceeeeec-cccHHHHHhcc--ccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 611 EGLLEFIP-SRSLAQILSEH--RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 611 ~GlIE~V~-s~tl~~I~~~~--~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
+|+||||+ +.|+.+|++++ ..+.+||.++++++.+|+ ++++||+.|||+|||+|||||||||
T Consensus 82 ~GlIE~v~~~~sl~~i~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~F~~SlA~~s~~~YilgigDR 146 (237)
T cd00892 82 CGIIEWVPNTATLRSILLEIYPPVFHEWFLENFPDPSAWL----KARNAYTRSTAVMSMVGYILGLGDR 146 (237)
T ss_pred CceEEECCCCccHHHHHHHhCCHHHHHHHHHHCcCHHHHH----HHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999 89999999874 478899999999887765 6899999999999999999999999
No 27
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=6.2e-33 Score=284.29 Aligned_cols=137 Identities=28% Similarity=0.471 Sum_probs=128.6
Q ss_pred EEEecCcceeeccCCcceEEEEEecCCCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhc----CCCceeeeeEEEEecC
Q 005800 534 TGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQ 609 (676)
Q Consensus 534 ~~i~~~~~~v~~S~~~Pl~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~----~ldl~l~~Y~Vl~t~~ 609 (676)
.++. ++++||+|+++|++++|.++||+.|.+|+|.|||||||++++|++++||.+|+++ ++++.++||+|+|+|+
T Consensus 2 ~~~~-~~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls~ 80 (235)
T cd05172 2 VGFD-ERVLVLSSLRKPKRITIRGSDEKEYPFLVKGGEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMTP 80 (235)
T ss_pred CCcC-CceEEeccCCCCEEEEEECCCCCEEEEEEECCCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeCC
Confidence 4555 5799999999999999999999999999999999999999999999999999975 7899999999999999
Q ss_pred CCceeeeec-cccHHHHHhccccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 610 DEGLLEFIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 610 ~~GlIE~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
++|+||||+ +.|+++|+++ +.+.+||.+.++++.+|+ ++++||++|||+|||+|||||||||
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~-~~l~~~~~~~~~~~~~~~----~~r~~F~~S~A~~S~~~YilglgDR 143 (235)
T cd05172 81 RFGLIEWLENTTPLKEILKN-DLLRRALVEMSASPEAFL----SLRDHFAKSLAAMCVSHWILGIGDR 143 (235)
T ss_pred CCceEEEcCCchhHHHHHhh-HHHHHHHHHHCCCHHHHH----HHHHHHHHHHHHHHHHhheeeccCC
Confidence 999999999 8999999985 678999999998887775 7899999999999999999999999
No 28
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=99.97 E-value=3.6e-31 Score=255.20 Aligned_cols=117 Identities=23% Similarity=0.328 Sum_probs=103.9
Q ss_pred CCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCcccccceEe
Q 005800 12 CDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITL 91 (676)
Q Consensus 12 ~dl~~~~~~ki~~leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~f 91 (676)
=|++.|++|||.++.+- |..+.+++||+||||||+++||.|++|+++++ +.+.|||||+|
T Consensus 4 wd~~~~~~v~i~~~~~~-------------------~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~f 63 (158)
T cd08398 4 WKINSNLRIKILCATYV-------------------NVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDY 63 (158)
T ss_pred eeCCCCeEEEEEeeccC-------------------CCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEc
Confidence 38999999999997763 22345799999999999999999999999998 56789999999
Q ss_pred cccccCcCccCceEEEEEeecCCC----CceeEeEEEEEeecccccccccceeeEeecCCC
Q 005800 92 STKYRDLTAHSQLALTVWDVSCGK----DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKE 148 (676)
Q Consensus 92 pi~~~dLP~~a~L~~ti~~~~~~~----~~~~vG~~~~~LFd~~~~Lr~G~~~l~lw~~~~ 148 (676)
||+|+||||+|+||||||++.+.+ +..+|||+|++|||++|+||+|.+.|++||...
T Consensus 64 pI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~~~~Lr~G~~~L~lW~~~~ 124 (158)
T cd08398 64 DIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDYTDTLVSGKMALNLWPVPH 124 (158)
T ss_pred ccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECCCChhhCCCEEEEEEcCCc
Confidence 999999999999999999997532 347999999999999999999999999999643
No 29
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=99.97 E-value=6.3e-32 Score=283.85 Aligned_cols=126 Identities=34% Similarity=0.546 Sum_probs=111.4
Q ss_pred CcceEEEEEecC--CCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCceeeeec-cccHHH
Q 005800 548 LHPLRLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQ 624 (676)
Q Consensus 548 ~~Pl~l~f~~~d--g~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~ 624 (676)
.+|...+..+.. ++.+.+|||+|||||||++++|+|++||.||+++++|++|+||+|+|||+++||||||+ +.|+++
T Consensus 16 ~r~r~~s~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~~~~~i~~~~~l~l~l~~Y~vip~~~~~GlIE~V~ns~tl~~ 95 (293)
T cd05168 16 ERIRKSSPYGHLKSWDLRSVIVKTGDDLRQELLAMQLIQQFDRIFKEEGLPLWLRPYEILVTSSNSGLIETIPDTVSIDS 95 (293)
T ss_pred HHhhhcCccCcCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCceeeeEEEEEccCCceeEEEeCCchhHHH
Confidence 344444444433 45899999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHhccc----cHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 625 ILSEHR----SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 625 I~~~~~----~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
|+++++ +|.+||.++++++...| .++++||++|||||||+|||||||||
T Consensus 96 i~k~~~~~~~~l~~~f~~~~~~~~~~~---~~a~~nF~~S~A~ySvv~YvLGigDR 148 (293)
T cd05168 96 LKKKLTSKFKSLLDFFKKTFGDPSERF---REAQKNFIESLAGYSLICYLLQIKDR 148 (293)
T ss_pred HHHHhccCCchHHHHHHHHcCCCcHHH---HHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 998854 79999999998753333 58999999999999999999999999
No 30
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=99.97 E-value=2.2e-31 Score=270.54 Aligned_cols=130 Identities=43% Similarity=0.688 Sum_probs=123.6
Q ss_pred ecCcceeeccCCcceEEEEEecCCCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhc-CCCceeeeeEEEEecCCCceee
Q 005800 537 VPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE-NLDLHLTPYNVLATGQDEGLLE 615 (676)
Q Consensus 537 ~~~~~~v~~S~~~Pl~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~-~ldl~l~~Y~Vl~t~~~~GlIE 615 (676)
..++|+||+|+++|++|+|.++||+.|.+|+|.|||||||++++|++++||.+|+++ ++++++++|+|+|+|+++|+||
T Consensus 4 ~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~~ddlR~D~~~~ql~~~~n~il~~~~~~~l~~~~y~vipls~~~GlIE 83 (219)
T cd00142 4 DVKICRIMPSKTRPKKLTLIGADGKEYRILFKNGDDLRQDERVLQFIRLMNKILKKELGLDLFLTTYSVIPLSPRSGLIE 83 (219)
T ss_pred cCCceEEEcccCCCEEEEEEccCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhCCCCCceEEeEEEEEecCCceEEE
Confidence 457899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred eec-cccHHHHHhccccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 616 FIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 616 ~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
||+ +.|+. ..+.+|+...++++..|+ ++++||+.|||+||++||+||||||
T Consensus 84 ~v~~~~sl~------~~l~~~~~~~~~~~~~~~----~~~~~F~~SlA~~s~~~YilglgDR 135 (219)
T cd00142 84 VVPGSVTLE------DDLSKWLKRKSPDEDEWQ----EARENFISSLAGYSVAGYILGIGDR 135 (219)
T ss_pred EeCCCchhH------HHHHHHHHHHCcCHHHHH----HHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999 89999 457789999999887764 7999999999999999999999999
No 31
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=99.97 E-value=3.3e-32 Score=258.60 Aligned_cols=132 Identities=42% Similarity=0.720 Sum_probs=105.3
Q ss_pred CceEEEEEEEeCCcccccce-ecccccCC-CCcccccceEecccccCcCccCceEEEEEeecCCCCc----eeEeEEEEE
Q 005800 53 PELYVECALYIDGAPFGLPM-RTRLESMG-PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDE----RLVGGTTIL 126 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~-~T~~~~~~-~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~----~~vG~~~~~ 126 (676)
++++|+|+|||||++||.|+ .|++++++ ....|||||+|||.||||||+|+|||+||++...... .+|||+|++
T Consensus 2 ~~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~ 81 (142)
T PF00792_consen 2 SKLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLP 81 (142)
T ss_dssp EEEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEE
T ss_pred CeEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEE
Confidence 57999999999999999998 89999987 7889999999999999999999999999999876554 899999999
Q ss_pred eecccccccccceeeEeecCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHhhhhcccccc---cchhhhhhH
Q 005800 127 LFNSKMQLKTGKQKLRLWPGKEADGSLPTSTPGKVPKNERGELERLEKLINKYEREQIQR---VDWLDRLTF 195 (676)
Q Consensus 127 LFd~~~~Lr~G~~~l~lw~~~~~d~~~~~~~p~~~~~~~~~~~~rl~~l~~~~~~G~~~~---~~wlD~l~~ 195 (676)
|||+++.||+|.+.|+|||..+++...++ ++++|+++++++|++|++++ ++|||++||
T Consensus 82 lFd~~~~L~~G~~~L~lW~~~~~~~~~~~-----------~~~~~l~~~~~~~~~g~~~~~~~v~wld~l~~ 142 (142)
T PF00792_consen 82 LFDYRGQLRQGPQKLSLWPDEEPDPSGPT-----------DELNRLEKLLKKYERGEIPHPPIVEWLDFLTF 142 (142)
T ss_dssp SB-TTSBBEEEEEEEE-EET-TTSS---------------SSS-TTSTCSS-S-SSS-EEEEEEE--SSE--
T ss_pred eECCCCcccCCCEEEEEEcCCCCcccccc-----------cccchhhHhhccCcCCCcCCCCCcccccCCCC
Confidence 99999999999999999998876654332 57889999999999999999 999999986
No 32
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=99.97 E-value=6.6e-31 Score=267.36 Aligned_cols=132 Identities=27% Similarity=0.507 Sum_probs=123.3
Q ss_pred EEEecCcceeeccCCcceEEEEEecCCCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcC----CCceeeeeEEEEecC
Q 005800 534 TGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYNVLATGQ 609 (676)
Q Consensus 534 ~~i~~~~~~v~~S~~~Pl~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~----ldl~l~~Y~Vl~t~~ 609 (676)
.++. +.++|++|+++|++|+|.++||+.|.+|+|.|||||||++++|++++||.+|++++ ++++++||+|+|+|+
T Consensus 2 ~~~~-~~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls~ 80 (222)
T cd05164 2 ASFD-DAVRILGSKQKPKKITLTGSDGKKYLFLVKGGEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLNS 80 (222)
T ss_pred cccc-CeeEEecccCCCEEEEEECCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcCC
Confidence 3455 67999999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred CCceeeeec-cccHHHHHhccccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 610 DEGLLEFIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 610 ~~GlIE~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
++|+||||+ +.|+.++ +.+|+...++++++|+ .+++||+.|||+||++|||||||||
T Consensus 81 ~~GliE~v~~~~sl~~~------l~~~~~~~~~~~~~~~----~~r~~F~~SlA~~s~~~YvlglgDR 138 (222)
T cd05164 81 RSGLIEWVEGTTTLKPV------LKKWFWLQFPDPEQWF----AARKNYTRSTAVMSIVGYILGLGDR 138 (222)
T ss_pred CCceEEEcCCcchHHHH------HHHHHHHHCcCHHHHH----HHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999999 8999965 5578999999887775 6899999999999999999999999
No 33
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=99.97 E-value=6.5e-31 Score=276.36 Aligned_cols=137 Identities=28% Similarity=0.481 Sum_probs=123.4
Q ss_pred EEecCcceeeccCCcceEEEEEecCCCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcC----CCceeeeeEEEEecCC
Q 005800 535 GIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYNVLATGQD 610 (676)
Q Consensus 535 ~i~~~~~~v~~S~~~Pl~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~----ldl~l~~Y~Vl~t~~~ 610 (676)
++. ++|+||+|+++|++|+|.++||+.|.+|+|+|||||||++++|++++||.+|++++ +++.++||.|+|+|++
T Consensus 3 ~f~-~~v~v~~s~~~pk~i~~~gsdG~~y~fl~K~~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls~~ 81 (280)
T cd05169 3 SFD-PVLKVIPSKQRPRRLTIVGSDGKEYKFLLKGHEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLSPN 81 (280)
T ss_pred ccc-CeEEEEeCCCCCeEEEEECCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecCCC
Confidence 455 57999999999999999999999999999999999999999999999999999984 8999999999999999
Q ss_pred Cceeeeec-cccHHHHHhccc--------------------------------------------cHHHHHHhhCCCCCC
Q 005800 611 EGLLEFIP-SRSLAQILSEHR--------------------------------------------SIISYLQKFHPDEHG 645 (676)
Q Consensus 611 ~GlIE~V~-s~tl~~I~~~~~--------------------------------------------~l~~~l~~~~~~~~~ 645 (676)
+||||||+ +.|+.+|++++. .+.+||...++++..
T Consensus 82 ~GlIE~v~~~~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~i~~~~~~~~l~~~~~~~~~~~~~ 161 (280)
T cd05169 82 VGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKSAPDYDNLTLIQKLEVFEYALNNTPGDDLRKILWLKSPSSEA 161 (280)
T ss_pred cceEEeCCCCchHHHHHHHHHHHcCCChhHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHH
Confidence 99999999 899999976411 245666667777766
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 646 PFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 646 ~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
|+ ++++||++|||+|||+|||||||||
T Consensus 162 w~----~~r~~F~~S~A~~Sv~~YilglgDR 188 (280)
T cd05169 162 WL----ERRTNFTRSLAVMSMVGYILGLGDR 188 (280)
T ss_pred HH----HHHHHHHHHHHHHHHHHhheeccCC
Confidence 64 7899999999999999999999999
No 34
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.97 E-value=2.3e-30 Score=285.92 Aligned_cols=145 Identities=29% Similarity=0.466 Sum_probs=129.2
Q ss_pred CCCCcccCCCCceEEEEEecCcceeeccC-CcceEEEEEec---------------------------------------
Q 005800 519 FEEPIRSPLAPNILITGIVPSESSIFKSA-LHPLRLTFRTA--------------------------------------- 558 (676)
Q Consensus 519 ~~~~~~lPldP~~~i~~i~~~~~~v~~S~-~~Pl~l~f~~~--------------------------------------- 558 (676)
.+.|+-.|++|+++++.|+...++|+.|+ .+|-|+.|.+.
T Consensus 934 ~~~pil~pf~~~ivl~~i~l~gikv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1374)
T PTZ00303 934 LPHPILNPFKPYIVLKSIRLSGVKVAPNAASKPTWLAFSTWSAAEHLERDTMTAANNFGAHTLPTGESHAERSGEGREKG 1013 (1374)
T ss_pred CCcccccCCCcceeEEeeeccCeEeccccccCcchhhccchhhhhhhhhhcccccccccccccccccchhhhcccccccc
Confidence 45689999999999999999999999997 88999988642
Q ss_pred -----------------------CCC-----------eEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEE
Q 005800 559 -----------------------SGG-----------TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNV 604 (676)
Q Consensus 559 -----------------------dg~-----------~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~V 604 (676)
+|. .+.+|||+| |||||||++|||++||+||+++++|++|+||+|
T Consensus 1014 ~~~~~~~~~~~~~~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~g-DLRQDQLVLQmIrLMDrLLKkEnLDLKLTPYRV 1092 (1374)
T PTZ00303 1014 TGAAKTYTSTKTSAPVTSPVTAVNGVSPESLHDSLPQECMFLYKRE-NVERDQLMCISSRLLQMLLSSEIGNAEMLDYSV 1092 (1374)
T ss_pred cCCCccccccccccceeeeeeccCCcCccccccccchheeEEEecC-cHHHHHHHHHHHHHHHHHHHhcCCCccccceEE
Confidence 111 489999996 999999999999999999999999999999999
Q ss_pred EEecCCCceeeeeccccHHHHHhccccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 605 LATGQDEGLLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 605 l~t~~~~GlIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
||||.+.||||+|++.++++|.+ ..|.+||+..+ ...++||++|||||||+|||||||||
T Consensus 1093 LATG~dsGLIEfVps~tLAsI~~--~~Il~YLr~~~----------t~~~~NFi~S~AGYsViTYILgIgDR 1152 (1374)
T PTZ00303 1093 LPLSCDSGLIEKAEGRELSNLDN--MDIASYVLYRG----------TRSCINFLASAKLFLLLNYIFSIGDR 1152 (1374)
T ss_pred EeccCCcccEEEecchHHHHhhh--hHHHHHHHhcC----------cHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 99999999999999889999975 45999998421 13578999999999999999999999
No 35
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=99.97 E-value=6.7e-30 Score=250.38 Aligned_cols=121 Identities=23% Similarity=0.362 Sum_probs=107.9
Q ss_pred eCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCcccccceE
Q 005800 11 SCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPIT 90 (676)
Q Consensus 11 s~dl~~~~~~ki~~leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~ 90 (676)
+-|++.+++|+|.++++-.. .+...+++|+|+|||||++||.|++|+++++.+.+.|||||+
T Consensus 3 ~w~~~~~f~i~i~~~~~~~~------------------~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~ 64 (173)
T cd08693 3 LWDIEEKFSITLHKISNLNA------------------AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLE 64 (173)
T ss_pred eeccCCCEEEEEEEeccCcc------------------CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEE
Confidence 35899999999999998422 234589999999999999999999999999988899999999
Q ss_pred ecccccCcCccCceEEEEEeecCCC----------------CceeEeEEEEEeecccccccccceeeEeecCCCC
Q 005800 91 LSTKYRDLTAHSQLALTVWDVSCGK----------------DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEA 149 (676)
Q Consensus 91 fpi~~~dLP~~a~L~~ti~~~~~~~----------------~~~~vG~~~~~LFd~~~~Lr~G~~~l~lw~~~~~ 149 (676)
|||+|+||||+|+|||+||++.... +..+|||+|++|||+++.||+|.+.|+|||..++
T Consensus 65 F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~Lr~G~~~L~lW~~~~~ 139 (173)
T cd08693 65 FDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQLKTGDHTLYMWTYAED 139 (173)
T ss_pred cccchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcccchhhcCCeEEEecCCCcc
Confidence 9999999999999999999986432 2479999999999999999999999999997664
No 36
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=99.97 E-value=6.7e-30 Score=250.07 Aligned_cols=119 Identities=18% Similarity=0.296 Sum_probs=101.5
Q ss_pred eCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCcccccceE
Q 005800 11 SCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPIT 90 (676)
Q Consensus 11 s~dl~~~~~~ki~~leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~ 90 (676)
.-||+.|++|||.+++- +.. ......+++|+|+||||++++|. ++|++++|++.+.|||||+
T Consensus 5 lwdi~~~friki~~~~~--~~~---------------~~~~~~~l~V~~~Ly~g~~~l~~-~~T~~~~~~~~~~WnEwL~ 66 (178)
T cd08399 5 LWDCDRKFRVKILGIDI--PVL---------------PRNTDLTVFVEANIQHGQQVLCQ-RRTSPKPFTEEVLWNTWLE 66 (178)
T ss_pred eEecCCCEEEEEEeecc--cCc---------------CCCCceEEEEEEEEEECCeeccc-ceeeccCCCCCccccccEE
Confidence 45999999999998872 211 12234689999999999888874 4899999998899999999
Q ss_pred ecccccCcCccCceEEEEEeecCCC----------------CceeEeEEEEEeecccccccccceeeEeecCC
Q 005800 91 LSTKYRDLTAHSQLALTVWDVSCGK----------------DERLVGGTTILLFNSKMQLKTGKQKLRLWPGK 147 (676)
Q Consensus 91 fpi~~~dLP~~a~L~~ti~~~~~~~----------------~~~~vG~~~~~LFd~~~~Lr~G~~~l~lw~~~ 147 (676)
|||+|+|||++|||||+||++.+.+ ++.||||+|++|||++++||+|.+.|++||..
T Consensus 67 f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~~ 139 (178)
T cd08399 67 FDIKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRFLLRTGEYVLHMWQIS 139 (178)
T ss_pred CccccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEcCCCceecCCEEEEEecCC
Confidence 9999999999999999999985421 35799999999999999999999999999954
No 37
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=99.96 E-value=2.6e-30 Score=271.52 Aligned_cols=134 Identities=26% Similarity=0.393 Sum_probs=122.8
Q ss_pred CcceeeccCCcceEEEEEecCCCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhc----CCCceeeeeEEEEecCCCcee
Q 005800 539 SESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQDEGLL 614 (676)
Q Consensus 539 ~~~~v~~S~~~Pl~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~----~ldl~l~~Y~Vl~t~~~~GlI 614 (676)
+.+.|+.|+++|++|++.++||+.|.+|+|+|||||||++++|++++||++|+++ ++++.+++|.|+|+|+++|||
T Consensus 6 ~~v~v~~s~~~Pkri~~~gsdG~~y~fl~K~~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls~~~GLI 85 (279)
T cd05171 6 DVFTTAGGINAPKIITCVGSDGKKYKQLLKGGDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLSPRAGIL 85 (279)
T ss_pred CeEEEecCCCCCEEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecCCCceEE
Confidence 5689999999999999999999999999999999999999999999999999998 799999999999999999999
Q ss_pred eeec-cccHHHHHhcc--------------------------------------------ccHHHHHHhhCCCCCCCCCc
Q 005800 615 EFIP-SRSLAQILSEH--------------------------------------------RSIISYLQKFHPDEHGPFGI 649 (676)
Q Consensus 615 E~V~-s~tl~~I~~~~--------------------------------------------~~l~~~l~~~~~~~~~~~~~ 649 (676)
|||+ +.|+.+|++++ +.+.+||.+.++++..|+
T Consensus 86 e~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p~l~~~f~~~~~~~~~~~-- 163 (279)
T cd05171 86 EWVDGTIPLGEYLVGATGAHERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKFLDPQDWF-- 163 (279)
T ss_pred EECCCChhHHHHHHHhhhcccccCccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcHHHHHHHHHHCcCHHHHH--
Confidence 9999 89999996542 024567777888777775
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 650 TATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 650 ~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
++++||++|||+|||+|||||||||
T Consensus 164 --~~r~~F~~S~A~~s~~~yilglgDR 188 (279)
T cd05171 164 --ERRLAYTRSVATSSIVGYILGLGDR 188 (279)
T ss_pred --HHHHHHHHHHHHHHHHHHhhccCCC
Confidence 7899999999999999999999999
No 38
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=99.96 E-value=2.2e-29 Score=246.52 Aligned_cols=126 Identities=23% Similarity=0.411 Sum_probs=110.7
Q ss_pred eCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecc----cccCCCCcccc
Q 005800 11 SCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTR----LESMGPMYCWN 86 (676)
Q Consensus 11 s~dl~~~~~~ki~~leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~----~~~~~~~~~Wn 86 (676)
+.|++.+++|+|.++.+..+.. .+..++++|+|+||||+++||.|+.|+ +++|...+.||
T Consensus 3 ~~~v~~~~~i~v~~~h~~~~~~----------------~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wn 66 (171)
T cd04012 3 ASTVTDLLSVTVSSLHRIPPTW----------------VQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWD 66 (171)
T ss_pred cccccccEEEEEEEeecCChHH----------------hhccccEEEEEEEEECCEECcCceeccccccccCcccccccc
Confidence 5689999999999999975532 223578999999999999999999996 66677778899
Q ss_pred cceEecccccCcCccCceEEEEEeecCCC---------CceeEeEEEEEeecccccccccceeeEeecCCCCCCC
Q 005800 87 EPITLSTKYRDLTAHSQLALTVWDVSCGK---------DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGS 152 (676)
Q Consensus 87 ewl~fpi~~~dLP~~a~L~~ti~~~~~~~---------~~~~vG~~~~~LFd~~~~Lr~G~~~l~lw~~~~~d~~ 152 (676)
|||+|||+|+||||+|+|||+||++.... ++.+|||+|++|||+++.||+|.+.|+|||..++++.
T Consensus 67 ewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~~L~~G~~~L~lW~~~~~~~~ 141 (171)
T cd04012 67 EWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRGVLRQGSLLLGLWPPSKDNPL 141 (171)
T ss_pred ceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcchhhhccCCEEEEeccCCccCcC
Confidence 99999999999999999999999987654 4689999999999999999999999999998776544
No 39
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=99.96 E-value=3.5e-28 Score=308.59 Aligned_cols=384 Identities=24% Similarity=0.278 Sum_probs=243.1
Q ss_pred cCCCCChHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHhhhchhhHhhhhccccCCC--HHHHHHHHHHhcccCCCCHh
Q 005800 280 RDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSD--VQEAKQALELMGRWEMIDVC 357 (676)
Q Consensus 280 ~~lkp~~~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv~W~~--~~e~~~a~~LL~~W~~i~~~ 357 (676)
......+.....+..+...+.+..-+...+...|...-.......+.......+.+.+ .....+..+++..+...+..
T Consensus 1487 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 1566 (2105)
T COG5032 1487 KLLSIIPPIEEIFLSNALSCYLQVKDLLKKLNLFELLGSLLSAKDAAGSYYKNFHIFDLEISVIPFIPQLLSSLSLLDLN 1566 (2105)
T ss_pred HHhccCCchhHHHHhhhccchHHHHHHHHhhHHHHHhhhhhhHHHHHHhhhhhcccccccccccchhhhhhhhcchhHHH
Confidence 3334444455566666666666666666777778777666555666666665554433 33355667788888888888
Q ss_pred hHhhccCC-CCCCHHHHHHHHH---------HHhcCCh-------------hHHHHHHHHH---HHHHhcccCcchHHHH
Q 005800 358 DALELLSP-VFESEEVRAYAVC---------ILERADD-------------DELQCYLLQL---VQALRFERSDKSRLSQ 411 (676)
Q Consensus 358 dALeLL~~-~f~d~~VR~yAV~---------~L~~~~d-------------~eL~~yLlQL---VQaLkyE~~~~s~La~ 411 (676)
.|.+++.. .+.++.-+.|..+ .-..+.+ .+-..|..-. .++|..+.. ...|..
T Consensus 1567 ~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~E~~~~~~~l~~~~~-~~~l~q 1645 (2105)
T COG5032 1567 SAQSLLSKIGKEHPQALVFTLRSAIESTALSKESVALSLENKSRTHDPSLVKEALELSDENIRIAYPLLHLLF-EPILAQ 1645 (2105)
T ss_pred HHHHHHHhhhhhchhhhhhhhhHHHHHhhhhhHhHHHHHhhhhhcCChhhHhHHHhhhhhhhhhhhhhhhhhH-HHHHHH
Confidence 88888887 4444332222222 2111100 0000000000 001111110 122677
Q ss_pred HHHHHhhhch--hhHHHHHHHHHHHccCcchhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHH-
Q 005800 412 FLVQRSSHNI--ELASFLRWYVSVEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCSIM- 488 (676)
Q Consensus 412 FLi~Ral~n~--~ig~~lfW~L~~E~~~~~~~~r~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q~~~i~~L~~i~- 488 (676)
++-+++..+. .+|....|.+..+..+-.........-......+.+.. +...+..+..+....+.-.++.
T Consensus 1646 ~~~r~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~ 1718 (2105)
T COG5032 1646 LLSRLSSENNKISVALLIDKPLHEERENFPSGLSLSSFQSSFLKELIKKS-------PRKIRKKFKIDISLLNLSRKLYI 1718 (2105)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHhhh-------HHHHHHHHHhhhhhhhhhHHHHH
Confidence 7777777777 58888888888777654421111111111222222211 0123344555555555555555
Q ss_pred HHhccCCCChhHHHHHHHHHHHhh---hhhcccCCCCcccCCC-CceEEEEEecCcceeecc-CCcceEEEEEecCCCeE
Q 005800 489 RDVGNVRGNTQKKIEKLRQLLSGL---LSELTYFEEPIRSPLA-PNILITGIVPSESSIFKS-ALHPLRLTFRTASGGTC 563 (676)
Q Consensus 489 ~~vk~~~~~~~~k~e~L~~~L~~~---~~~l~~~~~~~~lPld-P~~~i~~i~~~~~~v~~S-~~~Pl~l~f~~~dg~~~ 563 (676)
..++..++..++..+......... .++.....-|...+.+ |.+.|.++.++ ..+++| .++|.+++++++||+.|
T Consensus 1719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~P~~~~~~k~~v~I~~f~p~-~~~~~~~~~~p~rl~~rgsdG~~y 1797 (2105)
T COG5032 1719 SVLRSIRKRLKRLLELRLKKVSPKLLLFHAFLEIKLPGQYLLDKPFVLIERFEPE-VSVVKSHLQRPRRLTIRGSDGKLY 1797 (2105)
T ss_pred HHHHHHHHHhHHHHHHHhcccCHHHHhccccccccCCcccccCCCCceEEEecCc-eeeeecccccceEEEEEecCCcEE
Confidence 334333222122222111110000 1111112224455555 88999999965 666666 89999999999999999
Q ss_pred EEEEEeCCchhHHHHHHHHHHHHHHHHHhcCC----CceeeeeEEEEecCCCceeeeec-cccHHHHHhcc---------
Q 005800 564 KMIFKKGDDIRQDQLVVQMVSLMDRLLKLENL----DLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEH--------- 629 (676)
Q Consensus 564 ~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~l----dl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~~--------- 629 (676)
++++|+|||||||+++||++++||++|++++. |++++||+|+|||+++|+||||| +.|+++|++++
T Consensus 1798 ~~i~K~~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vipls~~~GiIe~vpn~~tl~sI~~~~~~~~~i~~~ 1877 (2105)
T COG5032 1798 SFIVKGGDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIPLSPGSGIIEWVPNSDTLHSILREYHKRKNISID 1877 (2105)
T ss_pred EEEeecCccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEeccCCcceEEEecCcchHHHHHHHHhhhcCCChh
Confidence 99999999999999999999999999999987 99999999999999999999999 89999998752
Q ss_pred -----------------------------ccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 630 -----------------------------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 630 -----------------------------~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
..+++||-+.++++.+|+ .++.||++|||||||+||+||+|||
T Consensus 1878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~~~w~----~aR~Ny~~SlA~ySvigYiLglgDR 1949 (2105)
T COG5032 1878 QEKKLAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPNPEDWL----TARTNFARSLAVYSVIGYILGLGDR 1949 (2105)
T ss_pred HHhhhhhhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcCChhhHH----HHHHHHHHHHHHHHHHHHHccCCCc
Confidence 146788888888887774 7999999999999999999999999
No 40
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.96 E-value=1e-28 Score=238.15 Aligned_cols=125 Identities=29% Similarity=0.493 Sum_probs=108.3
Q ss_pred eCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCcccccceE
Q 005800 11 SCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPIT 90 (676)
Q Consensus 11 s~dl~~~~~~ki~~leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~ 90 (676)
.-|++.+++|||.++.|... +.....+++|+|+|||||+++|.+..|...++...+.|||||+
T Consensus 3 l~di~~~~~i~i~~~~~~~~-----------------~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~ 65 (156)
T cd08380 3 LWDINFNLRIKIHGITNINL-----------------LDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLT 65 (156)
T ss_pred eeecCCCeEEEEEeeccccc-----------------cCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeE
Confidence 35899999999999999633 2234589999999999999988777666555546788999999
Q ss_pred ecccccCcCccCceEEEEEeecCCC--CceeEeEEEEEeecccccccccceeeEeecCCCCCCC
Q 005800 91 LSTKYRDLTAHSQLALTVWDVSCGK--DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGS 152 (676)
Q Consensus 91 fpi~~~dLP~~a~L~~ti~~~~~~~--~~~~vG~~~~~LFd~~~~Lr~G~~~l~lw~~~~~d~~ 152 (676)
|||.|+||||+|+|||+||++.... ++.+|||+|++|||++|.||+|.+.|++||..++++.
T Consensus 66 F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~~~~L~~G~~~l~lW~~~~~~~~ 129 (156)
T cd08380 66 FDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDYKGKLRQGMITLNLWPGKKTDPR 129 (156)
T ss_pred ccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcccCcEecCCEEEeccCCcccCcc
Confidence 9999999999999999999998764 5689999999999999999999999999998877654
No 41
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=99.95 E-value=3e-28 Score=259.04 Aligned_cols=92 Identities=20% Similarity=0.420 Sum_probs=86.5
Q ss_pred EEecCcceeeccCCcceEEEEEecCCCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhc----CCCceeeeeEEEEecCC
Q 005800 535 GIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQD 610 (676)
Q Consensus 535 ~i~~~~~~v~~S~~~Pl~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~----~ldl~l~~Y~Vl~t~~~ 610 (676)
++. +++.|++|+++|++|+|.++||+.|.+|+|+|||||||++++|++++||.+|+++ ..++.++||.|+|++++
T Consensus 3 ~f~-~~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK~~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs~~ 81 (307)
T cd05170 3 SVG-STVTILPTKTKPKKLAFLGSDGKKYTYLFKGREDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLGPR 81 (307)
T ss_pred ccc-CeEEEEecCCCceEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcCCC
Confidence 444 6799999999999999999999999999999999999999999999999999996 57999999999999999
Q ss_pred Cceeeeec-cccHHHHHh
Q 005800 611 EGLLEFIP-SRSLAQILS 627 (676)
Q Consensus 611 ~GlIE~V~-s~tl~~I~~ 627 (676)
+||||||+ +.|+.+|++
T Consensus 82 ~GLIEwv~~~~tl~~i~~ 99 (307)
T cd05170 82 SGLIQWVDGATPLFGLYK 99 (307)
T ss_pred cceEEEcCCChhHHHHHH
Confidence 99999999 899998875
No 42
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.5e-26 Score=281.62 Aligned_cols=324 Identities=19% Similarity=0.322 Sum_probs=220.5
Q ss_pred HhhhhccccCCCHHHHHH-HHHHhccc----------CCCCHhhHhhccCCCCCC-HHHHHHHHHHHhcCChhHHHHHHH
Q 005800 326 LTKFLRSVEWSDVQEAKQ-ALELMGRW----------EMIDVCDALELLSPVFES-EEVRAYAVCILERADDDELQCYLL 393 (676)
Q Consensus 326 L~k~L~sv~W~~~~e~~~-a~~LL~~W----------~~i~~~dALeLL~~~f~d-~~VR~yAV~~L~~~~d~eL~~yLl 393 (676)
+-.|.+|.-.++.. +.| +-+|+.-| ++....|-... | ..+-+.--+++..++...+..-+.
T Consensus 1824 ~~~~~~sl~yg~~~-iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~------~~~~in~~i~~~~~~lp~Y~f~ta~s 1896 (2382)
T KOG0890|consen 1824 IYFFGRALYYGNQH-LYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSK------NLKLINSLIEEALEHLPTYQFYTAYS 1896 (2382)
T ss_pred HHHHHHHHHhcchh-HHHhhhHHHHHHHhhcchhcccccCChhhhhhh------hHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 33445555555543 333 23555555 44444444432 2 223334446889999999999999
Q ss_pred HHHHHHhcccCcc-hHHHHHHHHHhhhchhhHHHHHHHHHHHccCcch--hhhhHHHHHHHHHHHHhhCCCCCCCcchHH
Q 005800 394 QLVQALRFERSDK-SRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVH--AKRFYSTHEILEESMMKLTPGVDGEDGYKL 470 (676)
Q Consensus 394 QLVQaLkyE~~~~-s~La~FLi~Ral~n~~ig~~lfW~L~~E~~~~~~--~~r~~~~~~~l~~~~~~~l~~~~~~~~~~~ 470 (676)
||+..+.|-..+- .-|.+-+.+-+. ..-++-+|++.+-+..... ..|+ ..++...+. .+. ..
T Consensus 1897 QLlSRicH~~~dV~~vl~~II~~l~~---~YPqq~lW~~~a~~kS~~p~R~~R~----keIL~k~~~----~~~----~~ 1961 (2382)
T KOG0890|consen 1897 QLLSRICHPNQDVARVLKHIIAKLVL---AYPQQTLWQSAALSKSNVPSRVERC----KEILTKSRR----QKP----DY 1961 (2382)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHH---hCchHHHHHHHHHHhcccHHHHHHH----HHHHHHHHh----cCc----cH
Confidence 9999999876421 122222333333 3557999999877764432 2344 334443321 111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHh-----h----hhhc----ccCCC--CcccCCCCce----
Q 005800 471 WQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSG-----L----LSEL----TYFEE--PIRSPLAPNI---- 531 (676)
Q Consensus 471 ~~~l~~Q~~~i~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~-----~----~~~l----~~~~~--~~~lPldP~~---- 531 (676)
-+.+..+..+.++|.+++..=...+.+...=.+.++++... . .+.+ +.++. .-..|.+|-.
T Consensus 1962 ~~l~~da~~lTe~L~~lcn~~v~~ss~~~sl~t~F~kl~~~~~~s~iliP~~~~M~ptlP~~~~~~~~h~~~~~f~~~~~ 2041 (2382)
T KOG0890|consen 1962 KKLLSDAYDLTEKLTNLCNKKVNSSSKVLSLKTDFRKLVMNRRFSDILIPLQSIMDPTLPLIDNNHATHSPFPPFQSHLP 2041 (2382)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccccccHHHHHHHhccccChhhhhhhHhhhcccccccccCcccccCCCCCCCCcch
Confidence 23456788899999998874221110000001233433221 0 0000 00000 0112233322
Q ss_pred EEEEEecCcceeeccCCcceEEEEEecCCCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhc----CCCceeeeeEEEEe
Q 005800 532 LITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLAT 607 (676)
Q Consensus 532 ~i~~i~~~~~~v~~S~~~Pl~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~----~ldl~l~~Y~Vl~t 607 (676)
.|.|+. ++++||+|.++|++|.++|+||+.|.+|+|.-||||+|.+.|++-.+||++++++ ...|.++||.|||+
T Consensus 2042 ~IsgF~-d~V~Il~SLqKPKkI~l~GsDGk~Y~~lCKpKDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYaViPL 2120 (2382)
T KOG0890|consen 2042 YISGFS-DEVKILNSLQKPKKIKLRGSDGKIYPFLCKPKDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYAVIPL 2120 (2382)
T ss_pred hhhcch-HHHHHHHhccCCeEEEEEcCCCCEeEEEeCchhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEEEeec
Confidence 478887 8999999999999999999999999999999999999999999999999999996 47899999999999
Q ss_pred cCCCceeeeec-cccHHHHHhc-c---------------------------------------ccHHHHHHhhCCCCCCC
Q 005800 608 GQDEGLLEFIP-SRSLAQILSE-H---------------------------------------RSIISYLQKFHPDEHGP 646 (676)
Q Consensus 608 ~~~~GlIE~V~-s~tl~~I~~~-~---------------------------------------~~l~~~l~~~~~~~~~~ 646 (676)
+..||+||||| ..++++|+.+ | ..+++||...||+|.+|
T Consensus 2121 neeCGiIEWv~nt~slR~IL~klY~~rg~~~~~~~l~~~~~~~~~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPeP~sW 2200 (2382)
T KOG0890|consen 2121 NEECGIIEWVPNTASLREILDKLYMTRGKWMIKKQLRSVHLKKQMAKEEKGKVFREKLLPKFPPVFHEWFLESFPEPGSW 2200 (2382)
T ss_pred CCccceEEecCCcchHHHHHHHHHHhccccchhhHHHHhcCcHhhcccchhhhhHHhhcccCCcHHHHHHHHhCCCchHH
Confidence 99999999999 8899999764 1 15789999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 647 FGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 647 ~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
| .+|.+|++|.|++||+|||||+|||
T Consensus 2201 ~----~SR~~Y~rTtAVMSmVGyIlGLGDR 2226 (2382)
T KOG0890|consen 2201 F----ASRNNYARTTAVMSMVGYILGLGDR 2226 (2382)
T ss_pred H----HHHHHHHHHHHHHHHHHHHhcCccc
Confidence 8 7999999999999999999999999
No 43
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=99.93 E-value=1.9e-26 Score=231.54 Aligned_cols=102 Identities=51% Similarity=0.943 Sum_probs=98.0
Q ss_pred EEEEeCCchhHHHHHHHHHHHHHHHHHhcC----CCceeeeeEEEEecCCCceeeeec-cccHHHHHhccccHHHHHHhh
Q 005800 565 MIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEHRSIISYLQKF 639 (676)
Q Consensus 565 ~IfK~GDDLRQD~lvlQli~lmd~l~~~~~----ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~~~~l~~~l~~~ 639 (676)
+|||.|||||||++++|++++||.+|++++ +++.++||+|+|+|+++|+||||+ +.|+++| +.+||.+.
T Consensus 2 ~~~K~~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i------l~~~~~~~ 75 (202)
T smart00146 2 VIFKGGDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI------LYDWFKKK 75 (202)
T ss_pred eeecCCCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH------HHHHHHHH
Confidence 799999999999999999999999999997 999999999999999999999999 8999999 88999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 640 HPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 640 ~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
++++..|+ ++++||++|||+|||+|||||||||
T Consensus 76 ~~~~~~~~----~~~~~F~~SlA~~s~~~YilglgDR 108 (202)
T smart00146 76 FPDPEDYF----EARKNFTRSCAGYSVITYILGLGDR 108 (202)
T ss_pred CcCHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99887664 7999999999999999999999999
No 44
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=99.90 E-value=1e-23 Score=218.65 Aligned_cols=130 Identities=22% Similarity=0.296 Sum_probs=118.7
Q ss_pred eeccCCcceEEEEEecCCCeEEEEEE--eCCchhHHHHHHHHHHHHHHHHHhc----CCCceeeeeEEEEecCCCceeee
Q 005800 543 IFKSALHPLRLTFRTASGGTCKMIFK--KGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQDEGLLEF 616 (676)
Q Consensus 543 v~~S~~~Pl~l~f~~~dg~~~~~IfK--~GDDLRQD~lvlQli~lmd~l~~~~----~ldl~l~~Y~Vl~t~~~~GlIE~ 616 (676)
|..|+++|.+|++.++||+.|.+++| .|+|+|+|++++|++++||.+++++ ..++.+++|.|+|+++++|+|||
T Consensus 11 v~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viPLs~~~gLie~ 90 (253)
T cd05163 11 VRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVPLSPQIRLVED 90 (253)
T ss_pred EccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEEcCCccceEEE
Confidence 56788999999999999999999999 5789999999999999999999865 47899999999999999999999
Q ss_pred ec-cccHHHHHhc--------------cccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 617 IP-SRSLAQILSE--------------HRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 617 V~-s~tl~~I~~~--------------~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
|+ ..|+.+|... ...+.+||.+.++++..|| .++.+|++|+|++|++|||||+|||
T Consensus 91 ~~~~~tl~~i~~~~~~~~~~i~~~~~p~~~l~~~~~~~~~~~~~~~----~~r~~ft~s~A~~s~~gYilglgdR 161 (253)
T cd05163 91 DPSYISLQEIYEDKLEIYNEIQKDMVPDTILKNYILSTFPTYQDYW----LFRKQFTYQLALLSFMTYILSINNR 161 (253)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHCCCHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99 8999998752 1258899999999988886 6899999999999999999999998
No 45
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=99.89 E-value=9.6e-24 Score=215.84 Aligned_cols=111 Identities=35% Similarity=0.639 Sum_probs=88.6
Q ss_pred eEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCceeeeec-cccHHHHHhcc-----------
Q 005800 562 TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEH----------- 629 (676)
Q Consensus 562 ~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~~----------- 629 (676)
+|++|||+|||||||++++|++++||.+|++++...++++|.|+|+++++|+||||+ +.|+.+|..++
T Consensus 1 ~y~~l~K~~dDlr~D~~~~ql~~~~n~~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~ 80 (235)
T PF00454_consen 1 EYSFLVKGGDDLRQDERVMQLFRLMNRILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNP 80 (235)
T ss_dssp -EEEEEEESS-CHHHHHHHHHHHHHHHHHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC-
T ss_pred CceEEEECCchhhchhHHHHHHHHHHHHHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhcccccccccccccc
Confidence 489999999999999999999999999999999999999999999999999999999 89999998763
Q ss_pred ------------------ccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 630 ------------------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 630 ------------------~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
..+.+||...+++...|+ +++++|++|+|+|||++||||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~----~~r~~f~~sla~~si~~yilg~gDR 141 (235)
T PF00454_consen 81 SRKYKAKLFEKQSSKVPKDGLRQYFLKSFPSAEEWF----EARKNFTRSLAAYSILDYILGLGDR 141 (235)
T ss_dssp -----------------TTHHHHHHHHHSCTTHHHH----HHHHHHHHHHHHHHHHHHHHT-CS-
T ss_pred ccccccccccccccccccchHHHHHHhcCCChhhhH----hhhHhhHHHHHHHhhceEEEeecCC
Confidence 247789999998876653 6899999999999999999999999
No 46
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=4.5e-22 Score=244.14 Aligned_cols=325 Identities=20% Similarity=0.228 Sum_probs=227.5
Q ss_pred hhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhHhhccCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhc-c
Q 005800 324 RALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRF-E 402 (676)
Q Consensus 324 ~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~f~d~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLky-E 402 (676)
.||+-.+.|..-++..++.-..++...|-. ++....|-.---+-+...|...+....-||--.|.- |
T Consensus 2240 ~Alt~Yl~cl~~~~~~D~~~i~R~cslWfs------------ns~~~evn~~mk~~i~~ipsyKFip~~yQlAaRl~~~~ 2307 (2806)
T KOG0892|consen 2240 LALTNYLNCLSESDEYDVDLIFRCCSLWFS------------NSHLKEVNNSLKHEIQTVPSYKFIPLVYQLAARLGNSE 2307 (2806)
T ss_pred HHHHhHHHHHhhcccccHHHHHHHhhhhcc------------ccchHHHHHHHHHHhccCCcchhHHHHHHHHHHhcccc
Confidence 477788888888888888777888888833 222345555555666788999999999999999982 3
Q ss_pred -cCcchHHHHHHHHHhhhchh-hHHHHHHHHHHHccCcchhhhhH---HHHHHHHHHHHhhCCCCCCCcchHHHHHHHHH
Q 005800 403 -RSDKSRLSQFLVQRSSHNIE-LASFLRWYVSVEFHDPVHAKRFY---STHEILEESMMKLTPGVDGEDGYKLWQSLVRQ 477 (676)
Q Consensus 403 -~~~~s~La~FLi~Ral~n~~-ig~~lfW~L~~E~~~~~~~~r~~---~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q 477 (676)
..-..+|.+.+-+++...|- -++.++=.+..+-. +....|-+ .+...+.+.++- ...++ .+..+.+|
T Consensus 2308 ~~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd-~e~~n~sr~sl~~~rki~a~l~~--~~v~~-----~~~~~v~~ 2379 (2806)
T KOG0892|consen 2308 NNSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRD-NEDENRSRGSIDRDRKIAAELDL--CDVNQ-----GAGNMVRQ 2379 (2806)
T ss_pred CchHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcC-hhhhhhcccccchhHHHHHHHhh--hHhhc-----cchhHHHH
Confidence 33357788888888888884 44555544444331 12112211 244444443321 11111 12246666
Q ss_pred H-HHHHHHHHHHHHhccCCCChhHHHHHHH---HHHHhhhhhcccC-CCCcccCCCCc------eEEEEEecCcceeecc
Q 005800 478 T-ELTAQLCSIMRDVGNVRGNTQKKIEKLR---QLLSGLLSELTYF-EEPIRSPLAPN------ILITGIVPSESSIFKS 546 (676)
Q Consensus 478 ~-~~i~~L~~i~~~vk~~~~~~~~k~e~L~---~~L~~~~~~l~~~-~~~~~lPldP~------~~i~~i~~~~~~v~~S 546 (676)
+ .+.+....+|. .+.....+..|.-++. ..+... ++... ++...++.+++ ..|.++. +++.+..-
T Consensus 2380 v~~lc~~yI~lAn-l~~~q~~t~~k~v~~p~~~~~~K~~--nl~~v~~pT~ev~v~~s~~~~~~p~i~s~~-~~v~~~~G 2455 (2806)
T KOG0892|consen 2380 LECLCEAYISLAN-LKTSQNDTTSKLVRLPGYQWFLKQL--NLEGVPPPTMNVKVNDSGDYGNIPTVVSFD-DTVTFAGG 2455 (2806)
T ss_pred HHHHHHHHHHHhc-CcccccchhhhhhcCccccHHHhhh--hccCCCCCCCCccccCCcccCCCceEEecc-cceeeecC
Confidence 6 46677777777 5543222122211111 111111 11111 11234445555 4677777 77888887
Q ss_pred CCcceEEEEEecCCCeEEEEEE-eCCchhHHHHHHHHHHHHHHHHHhc----CCCceeeeeEEEEecCCCceeeeec-cc
Q 005800 547 ALHPLRLTFRTASGGTCKMIFK-KGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQDEGLLEFIP-SR 620 (676)
Q Consensus 547 ~~~Pl~l~f~~~dg~~~~~IfK-~GDDLRQD~lvlQli~lmd~l~~~~----~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~ 620 (676)
-..|++|+|.++||+++.-++| +|||||||+.|.|+|...|.+++++ +++|.|+||+|+|+|+..|+||||. +.
T Consensus 2456 inaPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~~et~krkL~irTYKVvPls~~sGvlEwv~~ti 2535 (2806)
T KOG0892|consen 2456 INAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQNDRETRKRKLSIRTYKVIPLSPKAGVLEWVTNTI 2535 (2806)
T ss_pred ccCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhccHHHHhcccceeEEeeeecCcccceeecccCCe
Confidence 7899999999999999999999 6699999999999999999999987 5899999999999999999999999 99
Q ss_pred cHHHHHhc--------c-------------------------------------ccHHHHHHhhCCCCCCCCCchHHHHH
Q 005800 621 SLAQILSE--------H-------------------------------------RSIISYLQKFHPDEHGPFGITATCLE 655 (676)
Q Consensus 621 tl~~I~~~--------~-------------------------------------~~l~~~l~~~~~~~~~~~~~~~~a~~ 655 (676)
++++++.. | ..++.||.++|++|..|| +++.
T Consensus 2536 plgeyLv~~~~gah~ry~p~d~s~~~crk~m~~~q~k~~E~r~k~y~~vc~n~~PvfryFflEkF~dP~~WF----ekrl 2611 (2806)
T KOG0892|consen 2536 PLGEYLVVESGGAHKRYRPNDWSLSKCRKLMSEVQKKSLETRLKAYDKVCRNIRPVFRYFFLEKFPDPADWF----EKRL 2611 (2806)
T ss_pred ehhhhhcccCCccccccCCCCCChHHHHHHHHHHhcccHHHHHHHHHHHHhhchHHHHHHHHHhcCCHHHHH----HHHH
Confidence 99998861 1 145678899999999997 7899
Q ss_pred HHHHHHHHHHHHHHhhccCCC
Q 005800 656 TFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 656 nFi~S~AgysV~tYiLGiGDR 676 (676)
+|++|.|+-||+|||||+|||
T Consensus 2612 aYTrsvA~sS~VGyILGLGDR 2632 (2806)
T KOG0892|consen 2612 AYTRSVAASSMVGYILGLGDR 2632 (2806)
T ss_pred HHHHhHHHHHHHHHHhcccch
Confidence 999999999999999999999
No 47
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=8e-22 Score=220.77 Aligned_cols=113 Identities=31% Similarity=0.559 Sum_probs=101.6
Q ss_pred CeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCceeeeec-cccHHHHHhccc---cHHHHH
Q 005800 561 GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEHR---SIISYL 636 (676)
Q Consensus 561 ~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~~~---~l~~~l 636 (676)
+...||+|.||||||+.++.|+|.-|.+||.++|+++|++||+|+-||.+.||||-|+ +.|+++|.+... .+.+||
T Consensus 586 dL~SVIVKtGdDLrQE~fA~Qli~~f~~IW~EegvplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~l~~~~~l~~F~ 665 (847)
T KOG0903|consen 586 DLRSVIVKTGDDLRQELFAYQLISAFKDIWQEEGVPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKRLPNLASLRHFF 665 (847)
T ss_pred ceEEEeeecCchHHHHHHHHHHHHHHHHHHHHcCCcceeeeEEEEEEecCccceeeccchhhHHHHHHhcchhhhHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999 999999998743 456677
Q ss_pred HhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 637 QKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 637 ~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
..+.+.....| ..|++||+.||||||+|||+|+|+||
T Consensus 666 ~~~g~~NS~~y---k~AQrNFvqSlagYSLvcYlLQvKDR 702 (847)
T KOG0903|consen 666 AAFGKPNSEKY---KSAQRNFVQSLAGYSLVCYLLQVKDR 702 (847)
T ss_pred HHhCCCCcHHH---HHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 66654443444 68999999999999999999999999
No 48
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=99.81 E-value=4e-20 Score=165.73 Aligned_cols=64 Identities=31% Similarity=0.551 Sum_probs=60.5
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCC
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD 116 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~ 116 (676)
++++|+|||||||++||.|+.|++++|.+.+.|||||+|||+|+||||+|+|||+||++.++.+
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~~~~ 95 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKNPSK 95 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeCCcc
Confidence 6899999999999999999999999999999999999999999999999999999999876543
No 49
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=99.43 E-value=1.8e-14 Score=181.54 Aligned_cols=143 Identities=28% Similarity=0.500 Sum_probs=118.4
Q ss_pred CceEEEEEecCcceeeccCCcceEEEEEecCCCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcC----CCceeeeeEE
Q 005800 529 PNILITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYNV 604 (676)
Q Consensus 529 P~~~i~~i~~~~~~v~~S~~~Pl~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~----ldl~l~~Y~V 604 (676)
|.+.|.++. .+..|+.|+.+|.++..+++||..|.++.|.+.|+|||+++||++.+||.++..+. ..+.+..|.+
T Consensus 1955 ~~i~i~~f~-~~~~vitskqRprkl~i~gs~g~d~~~~lkghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr~L~iq~Y~~ 2033 (2341)
T KOG0891|consen 1955 PIIRIQSFE-PKFNVITSKQRPRKLVIRGSDGKDYQYLLKGHEDLRQDERVMQLFGLVNTLLANDSETFRRNLTIQRYSV 2033 (2341)
T ss_pred eEEehhhcc-HHHHHHHHHhhhHHHhhcccchhhHHHHhhchhhhhhHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhh
Confidence 444445554 56889999999999999999999999999999999999999999999999999885 6788999999
Q ss_pred EEecCCCceeeeec-cccHHHHHhccc-------------------------------------------cHHHHHHhhC
Q 005800 605 LATGQDEGLLEFIP-SRSLAQILSEHR-------------------------------------------SIISYLQKFH 640 (676)
Q Consensus 605 l~t~~~~GlIE~V~-s~tl~~I~~~~~-------------------------------------------~l~~~l~~~~ 640 (676)
+|.+++.|+|+||| +.|++..++++. .+..-+--+.
T Consensus 2034 i~ls~~sgL~gWv~~~dtlh~L~r~~r~~k~i~l~~eh~~~~~~~l~~~~ltl~qk~~vfe~~~~~t~G~dl~~~lwlkS 2113 (2341)
T KOG0891|consen 2034 IPLSPDSGLIGWVPNCDTLHTLIREYREKKKIPLNIEHRVMLQMAPDYDHLTLMQKVEVFEYALSNTQGDDLYKVLWLKS 2113 (2341)
T ss_pred cCCCCCCceeeeecccccHHHHHHHHHHhhccCCcchHHHHHhcCccccchhhhhHHhHhHHHhhcCcHHHHHHHHHHhC
Confidence 99999999999999 999998887521 1111111123
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 641 PDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 641 ~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
+..+.|+ ..+.||++|.|+.|+++|++|+|||
T Consensus 2114 ~ssEaw~----~rrt~yt~S~A~msmvgyilGlGdr 2145 (2341)
T KOG0891|consen 2114 PSSEAWL----DRRTNYTRSLAVMSMVGYILGLGDR 2145 (2341)
T ss_pred CChhHHH----HHhhhhHHHHHHHHHHHHHhhcccc
Confidence 3333453 6688999999999999999999998
No 50
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=97.19 E-value=0.0029 Score=59.85 Aligned_cols=76 Identities=20% Similarity=0.308 Sum_probs=61.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.++.||++.+..+++.+.. .+|.-+.-..++.|||.+.|+|.-.+|+. +.|.|+||+.....+...||.+.++.+.
T Consensus 34 ~~d~yVkv~l~~~~~~~~~-~kT~v~~~~~nP~fnE~F~f~i~~~~l~~-~~L~~~V~~~~~~~~~~~lG~v~ig~~~ 109 (137)
T cd08409 34 HTSVYVKVSLMIHNKVVKT-KKTEVVDGAASPSFNESFSFKVTSRQLDT-ASLSLSVMQSGGVRKSKLLGRVVLGPFM 109 (137)
T ss_pred CCCeEEEEEEEECCEEeee-eecccEeCCCCCcccceEEEECCHHHhCc-cEEEEEEEeCCCCCCcceEEEEEECCcc
Confidence 4788999999988776533 35655555567889999999998888875 8899999998876667799999999764
No 51
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=97.01 E-value=0.0046 Score=58.19 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=59.2
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeeccc
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSK 131 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~ 131 (676)
.+|-||.+.+.+|++... ...|..+.-+.++.|||.+.|+|.-.++. ++.|.|+|||.....+...||.+.+..+...
T Consensus 34 ~~DPyV~v~l~~~~~~~~-~~kT~v~~~t~nP~wnE~F~f~i~~~~l~-~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~ 111 (135)
T cd08410 34 GSDPFVKIQLVHGLKLIK-TKKTSCMRGTIDPFYNESFSFKVPQEELE-NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG 111 (135)
T ss_pred CCCeEEEEEEEcCCcccc-eEcCccccCCCCCccceeEEEeCCHHHhC-CCEEEEEEEeCCCCCCCcEEEEEEEcCccCC
Confidence 467899999987776542 23455444445689999999999877775 5689999999877667789999988776543
Q ss_pred c
Q 005800 132 M 132 (676)
Q Consensus 132 ~ 132 (676)
+
T Consensus 112 ~ 112 (135)
T cd08410 112 P 112 (135)
T ss_pred c
Confidence 3
No 52
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=97.01 E-value=0.0076 Score=55.83 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=70.0
Q ss_pred eEEEeeCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccc
Q 005800 6 FRFFLSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCW 85 (676)
Q Consensus 6 ~~~~~s~dl~~~~~~ki~~leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~W 85 (676)
+.|.++.+ .-.+.|+|..-.+-.+. . ...+|-||.+.+..+.+.. ...+|+.+.-+.++.|
T Consensus 4 l~~~l~y~-~~~L~V~Vi~A~~L~~~--------------~---~~~~DpyVkv~l~~~~~~~-~~~kT~v~~~~~nP~w 64 (122)
T cd08381 4 VKLSISYK-NGTLFVMVMHAKNLPLL--------------D---GSDPDPYVKTYLLPDPQKT-TKRKTKVVRKTRNPTF 64 (122)
T ss_pred EEEEEEEe-CCEEEEEEEEeeCCCCC--------------C---CCCCCCEEEEEEeeCCccC-CceeCCccCCCCCCCc
Confidence 45555555 55577777655553221 1 2346779999998655332 2335665554567899
Q ss_pred ccceEecc-cccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 86 NEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 86 newl~fpi-~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
||.+.|++ ...++ .++.|.|+|||.....+...+|.+.++|=+
T Consensus 65 nE~F~f~~~~~~~l-~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~ 108 (122)
T cd08381 65 NEMLVYDGLPVEDL-QQRVLQVSVWSHDSLVENEFLGGVCIPLKK 108 (122)
T ss_pred ccEEEEecCChHHh-CCCEEEEEEEeCCCCcCCcEEEEEEEeccc
Confidence 99999997 55555 467899999998765556789999999944
No 53
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=96.95 E-value=0.0094 Score=55.85 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=57.2
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.++-||.+.|..+..... ..+|+.+.-..++.|||.+.|+|.-.+|+. ..|.|+||+...-.+...+|.+.|+|=+
T Consensus 36 ~~dpYVkv~llp~~~~~~-k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~-~~L~v~V~~~~~~~~~~~lG~~~i~L~~ 111 (128)
T cd08392 36 KCHPYVKVCLLPDKSHNS-KRKTAVKKGTVNPVFNETLKYVVEADLLSS-RQLQVSVWHSRTLKRRVFLGEVLIPLAD 111 (128)
T ss_pred CCCeEEEEEEEeCCcccc-eeecccccCCCCCccceEEEEEcCHHHhCC-cEEEEEEEeCCCCcCcceEEEEEEEcCC
Confidence 357799999986654332 235655554556889999999988777764 6799999998765566799999999844
No 54
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=96.94 E-value=0.0078 Score=51.30 Aligned_cols=74 Identities=20% Similarity=0.259 Sum_probs=55.7
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeeccc
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSK 131 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~ 131 (676)
..+.||.+.+...+ ....+|....-...+.|||.+.|++.-.+ ...|.|+||+.........+|++.+++.+..
T Consensus 20 ~~~~yv~v~~~~~~---~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~ 93 (101)
T smart00239 20 KSDPYVKVSLDGDP---KEKKKTKVVKNTLNPVWNETFEFEVPPPE---LAELEIEVYDKDRFGRDDFIGQVTIPLSDLL 93 (101)
T ss_pred CCCceEEEEEeCCc---cceEeeeEecCCCCCcccceEEEEecCcc---cCEEEEEEEecCCccCCceeEEEEEEHHHcc
Confidence 45779999887555 23345555554557899998888876555 8999999999876556789999999988753
No 55
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=96.94 E-value=0.0023 Score=60.80 Aligned_cols=74 Identities=15% Similarity=0.259 Sum_probs=57.3
Q ss_pred CceEEEEEEEeCCcccccceecccccCC-CCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMG-PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~-~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
++-||.+.|+.+++.+..- .|+.+.-+ +++.|||.+.|+|...++ +.+|.+++||....++...||++.+..-.
T Consensus 35 ~dpYVKV~L~~~~k~~~Kk-KT~v~k~t~~~P~fNEsF~Fdv~~~~~--~v~l~v~v~d~~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 35 LSFFVKVGMFSTGGLLYKK-KTRLVKSSNGQVKWGETMIFPVTQQEH--GIQFLIKLYSRSSVRRKHFLGQVWISSDS 109 (135)
T ss_pred CCcEEEEEEEECCCcceee-cCccEECCCCCceecceEEEeCCchhh--eeEEEEEEEeCCCCcCCceEEEEEECCcc
Confidence 4679999999999988543 45544333 457799999999998653 68999999998765566689999887653
No 56
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=96.94 E-value=0.011 Score=55.24 Aligned_cols=79 Identities=22% Similarity=0.244 Sum_probs=59.9
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecc
Q 005800 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (676)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (676)
..++.||.+.|..+.+....-.+|+-+.-..++.|||.++|||...+|. +..|.|+||+....+....+|++.++|=+.
T Consensus 33 ~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~-~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~ 111 (124)
T cd08680 33 ENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY-QKTLQVDVCSVGPDQQEECLGGAQISLADF 111 (124)
T ss_pred CCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh-cCEEEEEEEeCCCCCceeEEEEEEEEhhhc
Confidence 3468899999997765433333565544455688999999999888876 468999999987655667999999998654
No 57
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=96.91 E-value=0.011 Score=55.02 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=57.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecc
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (676)
.++-||.+.+..++.... ..+|..+.-+.++.|||.+.|++.-.+|. +..|.|+||+.....+...||.+.++|=+.
T Consensus 36 ~~dpyVkv~l~p~~~~~~-~~kT~v~~~t~nP~~nE~f~f~v~~~~l~-~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~ 112 (125)
T cd08393 36 RSDPYVKTYLLPDKSNRG-KRKTSVKKKTLNPVFNETLRYKVEREELP-TRVLNLSVWHRDSLGRNSFLGEVEVDLGSW 112 (125)
T ss_pred CCCcEEEEEEEcCCCccc-cccCccCcCCCCCccCceEEEECCHHHhC-CCEEEEEEEeCCCCCCCcEeEEEEEecCcc
Confidence 357799999986654321 22566655555688999999999887874 457999999987655667999999998554
No 58
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=96.86 E-value=0.0084 Score=57.09 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=58.9
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (676)
+|-||.+.|..+++.+.. ..|+.+.-..++.|||.++|+|.-.+|... .|.|+||+....++...+|++.+++-
T Consensus 38 ~DpYVKv~l~~~~~k~~k-kkT~v~k~t~nPvfNE~f~F~v~~~~L~~~-~L~~~V~d~d~~~~~d~iG~v~lg~~ 111 (138)
T cd08407 38 IDVSVKVTLKHQNAKLKK-KQTKRAKHKINPVWNEMIMFELPSELLAAS-SVELEVLNQDSPGQSLPLGRCSLGLH 111 (138)
T ss_pred CCeEEEEEEEcCCcccce-eccceeeCCCCCccccEEEEECCHHHhCcc-EEEEEEEeCCCCcCcceeceEEecCc
Confidence 688999999998877643 356655545568899999999997777654 59999999987666679999999884
No 59
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=96.85 E-value=0.013 Score=54.57 Aligned_cols=76 Identities=22% Similarity=0.270 Sum_probs=56.8
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.+|-||.+.+..++..... .+|+.+.-+..+.|||.+.|+|...+|. +..|.|+||+...-++...+|.+.++|=+
T Consensus 36 ~~DpyVkv~l~p~~~~~~~-~kT~v~~~t~nP~wnE~f~f~i~~~~l~-~~~L~~~V~d~~~~~~~~~lG~~~i~l~~ 111 (125)
T cd04029 36 RSNPYVKTYLLPDKSRQSK-RKTSIKRNTTNPVYNETLKYSISHSQLE-TRTLQLSVWHYDRFGRNTFLGEVEIPLDS 111 (125)
T ss_pred CCCcEEEEEEEcCCccccc-eEeeeeeCCCCCcccceEEEECCHHHhC-CCEEEEEEEECCCCCCCcEEEEEEEeCCc
Confidence 3567999999866643322 2565554445688999999999888884 45699999998765666799999999844
No 60
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=96.73 E-value=0.015 Score=54.56 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=56.3
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.++.||.+.+..+++... ..+|..+.-+.++.|||...|++...++. ++.|.|+|||....++...+|.+.+++-.
T Consensus 35 ~~dpyV~v~l~~~~~~~~-~~kT~v~~~t~~P~wne~F~f~i~~~~~~-~~~l~~~v~d~~~~~~~~~lG~~~i~~~~ 110 (136)
T cd08405 35 TSDPYVKVWLMYKDKRVE-KKKTVIKKRTLNPVFNESFIFNIPLERLR-ETTLIITVMDKDRLSRNDLIGKIYLGWKS 110 (136)
T ss_pred CCCceEEEEEEeCCCccc-cccCcceeCCCCCcccceEEEeCCHHHhC-CCEEEEEEEECCCCCCCcEeEEEEECCcc
Confidence 367799999987665442 23555544455689999999998766654 67899999998765555789999998764
No 61
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=96.65 E-value=0.027 Score=52.63 Aligned_cols=118 Identities=13% Similarity=0.153 Sum_probs=74.4
Q ss_pred ceEEEeeCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCcc
Q 005800 5 EFRFFLSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYC 84 (676)
Q Consensus 5 ~~~~~~s~dl~~~~~~ki~~leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~ 84 (676)
.|++.|..+- ..+.|+|.+-.+-.+. ..+ ...++-||.+.+..+.+. ..+|+.+.-+.++.
T Consensus 6 ~~~l~y~~~~-~~L~V~Vi~a~~L~~~--------------~~~-~~~~DpyV~v~l~~~~~~---~~kT~v~~~t~nP~ 66 (128)
T cd08388 6 FFSLRYNSEK-KALLVNIIECRDLPAM--------------DEQ-SGTSDPYVKLQLLPEKEH---KVKTRVLRKTRNPV 66 (128)
T ss_pred EEEEEEECCC-CEEEEEEEEeECCCCC--------------CCC-CCCcCCEEEEEEeCCcCc---eeeccEEcCCCCCc
Confidence 3444554432 3577777766663221 000 123577999998754332 23565544455689
Q ss_pred cccceEe-cccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecccccccccceeeEeec
Q 005800 85 WNEPITL-STKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWP 145 (676)
Q Consensus 85 Wnewl~f-pi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~~Lr~G~~~l~lw~ 145 (676)
|||...| .+...++... .|.|+||+...-++...+|.+.++|=+-.- . |...+.+|.
T Consensus 67 wnE~F~f~~~~~~~~~~~-~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~--~-~~~~~~~~~ 124 (128)
T cd08388 67 YDETFTFYGIPYNQLQDL-SLHFAVLSFDRYSRDDVIGEVVCPLAGADL--L-NEGELLVSR 124 (128)
T ss_pred eeeEEEEcccCHHHhCCC-EEEEEEEEcCCCCCCceeEEEEEeccccCC--C-CCceEEEEE
Confidence 9999999 5777776654 599999998665566799999999965322 2 233367884
No 62
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=96.64 E-value=0.028 Score=52.70 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=55.3
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (676)
.++-||++.+-.+++... ..+|..+.-+.++.|||.+.|++...+|. ++.|.|+|||...-++...||.+.+++=
T Consensus 35 ~~dpyv~v~l~~~~~~~~-~~kT~v~~~t~nP~wne~f~f~i~~~~l~-~~~l~~~v~d~~~~~~~~~iG~~~i~~~ 109 (136)
T cd08402 35 LSDPYVKIHLMQNGKRLK-KKKTTIKKRTLNPYYNESFSFEVPFEQIQ-KVHLIVTVLDYDRIGKNDPIGKVVLGCN 109 (136)
T ss_pred CCCCeEEEEEEECCcccc-eeeccceeCCCCCcccceEEEECCHHHhC-CCEEEEEEEeCCCCCCCceeEEEEECCc
Confidence 357799999876665442 23455444445688999999998777664 4679999999876556679999999983
No 63
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=96.57 E-value=0.022 Score=54.12 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=57.7
Q ss_pred CCceEEEEEEEeC-CcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYID-GAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~-~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.+|.||.++|..+ ++.++. .+|+.+.-..++.|||.+.|+|.-.+|+ +..|.|+||+.....+...+|.+.+++..
T Consensus 35 ~~dpyVkv~llp~~~~~~~~-~kT~v~~~t~nPvfnEtF~f~i~~~~l~-~~~L~~~V~~~~~~~~~~~iG~v~l~~~~ 111 (138)
T cd08408 35 APDTYVKLTLLNSDGQEISK-SKTSIRRGQPDPEFKETFVFQVALFQLS-EVTLMFSVYNKRKMKRKEMIGWFSLGLNS 111 (138)
T ss_pred CCCeeEEEEEEeCCCcceee-ccceeecCCCCCcEeeeEEEECCHHHhC-ccEEEEEEEECCCCCCCcEEEEEEECCcC
Confidence 4688999999964 444433 3566555556789999999999877754 56799999998766666799998887764
No 64
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=96.57 E-value=0.021 Score=52.81 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=57.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.++.||++.+..++... ...+|..+.-+..+.|||.+.|++.-.+| ....|.|+||+.....+...+|.++++|-+
T Consensus 34 ~~dpyv~v~l~~~~~~~-~~~~T~~~~~~~~P~wne~f~f~i~~~~l-~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 34 LSDPYVKVSLLQGGKKL-KKKKTSVKKGTLNPVFNEAFSFDVPAEQL-EEVSLVITVVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCcEEEEEEEcCCeEe-eeecCcceecCCCCeeeeeEEEECCHHHh-CCcEEEEEEEecCCCCCCceeEEEEECCCC
Confidence 46889999998766443 22345554445568999999999876666 467899999998765566799999999977
No 65
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=96.53 E-value=0.024 Score=53.71 Aligned_cols=76 Identities=20% Similarity=0.156 Sum_probs=57.8
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.+|-||.+.|..+++..... +|+-+.-+.++.|||.+.|+|.-.+|+ ++.|.|+||+.....+...||.+.+....
T Consensus 35 ~~DpyVkv~l~~~~~~~~k~-kT~v~k~t~nP~~nE~f~F~v~~~~l~-~~~l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 35 TADPFVKVYLLQDGRKISKK-KTSVKRDDTNPIFNEAMIFSVPAIVLQ-DLSLRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCeEEEEEEEeCCcccccc-CCccccCCCCCeeceeEEEECCHHHhC-CcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 46789999999888765432 455444445688999999998777755 47899999998765566789999886653
No 66
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=96.53 E-value=0.022 Score=52.58 Aligned_cols=76 Identities=20% Similarity=0.202 Sum_probs=56.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCC-CceeEeEEEEEeecc
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK-DERLVGGTTILLFNS 130 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~-~~~~vG~~~~~LFd~ 130 (676)
.++-||.+.|..+.+..+ ..+|+.+.-+.++.|||.+.|++.-.++.. .|.|+||+..... +...+|++.++|=+.
T Consensus 31 ~~dpYVkv~l~p~~~~~~-~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~--~l~v~V~~~~~~~~~~~~lG~~~i~l~~~ 107 (119)
T cd08685 31 TCNSYVKISLSPDKEVRF-RQKTSTVPDSANPLFHETFSFDVNERDYQK--RLLVTVWNKLSKSRDSGLLGCMSFGVKSI 107 (119)
T ss_pred CCCeeEEEEEEeCCCCcc-eEeCccccCCCCCccccEEEEEcChHHhCC--EEEEEEECCCCCcCCCEEEEEEEecHHHh
Confidence 367799999987664432 224655554557889999999998888743 6889999976543 357999999998553
No 67
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=96.45 E-value=0.012 Score=54.72 Aligned_cols=90 Identities=21% Similarity=0.179 Sum_probs=61.5
Q ss_pred CCceEEEEEEEeCCcccccc-eecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecc
Q 005800 52 RPELYVECALYIDGAPFGLP-MRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p-~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (676)
.+|-||.+.|.....+-... .+|..+.-+-++.|||.++|++.-.+.+..+.|.|+|||....++..+||.+.++|=+-
T Consensus 19 ~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~ 98 (120)
T cd08395 19 MFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDI 98 (120)
T ss_pred CCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHC
Confidence 45779999997322222112 24555443346889999999998777888999999999976544556899999997443
Q ss_pred cccccccceeeEeecC
Q 005800 131 KMQLKTGKQKLRLWPG 146 (676)
Q Consensus 131 ~~~Lr~G~~~l~lw~~ 146 (676)
. .+|. ..+|..
T Consensus 99 ~---~~~~--~~~w~~ 109 (120)
T cd08395 99 A---QAGS--CACWLP 109 (120)
T ss_pred c---CCCc--EEEEEE
Confidence 2 3333 456853
No 68
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=96.42 E-value=0.034 Score=51.69 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=58.4
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (676)
+|=||.+.|..+++. ...+|+.+.-+-++.|||.+.|+|...+|+. ..|.|+|||...-.+..+||.+.+++=
T Consensus 32 sDPYVKv~L~~~~k~--~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~-~tL~~~V~d~Drfs~~d~IG~v~l~l~ 104 (118)
T cd08677 32 CECYISGCVSVSEGQ--KEAQTALKKLALHTQWEEELVFPLPEEESLD-GTLTLTLRCCDRFSRHSTLGELRLKLA 104 (118)
T ss_pred CCeEEEEEEcCCcCc--cEEEcceecCCCCCccccEEEEeCCHHHhCC-cEEEEEEEeCCCCCCCceEEEEEEccc
Confidence 577999999876652 2336766655567889999999999999875 579999999987667779999999874
No 69
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=96.41 E-value=0.039 Score=54.87 Aligned_cols=66 Identities=26% Similarity=0.363 Sum_probs=53.5
Q ss_pred CCCcccccceEecccccCcCccCceEEEEEeecCCCC------ceeEeEEEEEeecccccccccceeeEeecCC
Q 005800 80 GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD------ERLVGGTTILLFNSKMQLKTGKQKLRLWPGK 147 (676)
Q Consensus 80 ~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~------~~~vG~~~~~LFd~~~~Lr~G~~~l~lw~~~ 147 (676)
.+.+.|+|.|...+. .+|....-|.||+|.++...+ ++++|-+-++|+. +|+|+.|.+.|.+-...
T Consensus 64 nk~P~f~DEiKi~LP-~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~-~g~L~~g~~~LpV~~~~ 135 (179)
T cd08696 64 NKSPDFYDEIKIKLP-ADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR-NGRLQSGEFNLPVSLEK 135 (179)
T ss_pred CCCCcccceEEEEcC-CCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec-CCEEecCCEEEEEEecC
Confidence 456789999888777 467889999999999865322 4689999999996 77899999999886543
No 70
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=96.41 E-value=0.033 Score=52.22 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=57.3
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.+|-||.+.+..+++.+. ..+|..+.-+.++.|||...|++.-.++ .+..|.|+|||...-.+...||.+.+++.+
T Consensus 35 ~~Dpyv~v~l~~~~~~~~-~~kT~v~k~t~nP~w~e~F~f~v~~~~~-~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 35 LADPYVKVNLYYGKKRIS-KKKTHVKKCTLNPVFNESFVFDIPSEEL-EDISVEFLVLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCeEEEEEEEcCCceee-eEcCccccCCCCCccCceEEEECCHHHh-CCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence 467899999987765542 2345444334568899999999887777 567799999998765566799999998876
No 71
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=96.39 E-value=0.038 Score=50.76 Aligned_cols=73 Identities=22% Similarity=0.350 Sum_probs=54.6
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
++-||.+.+..+++ ...+|..+.-+.++.|||.+.|++...++. +..|.|+||+.....+...+|.+.++|=+
T Consensus 37 ~dpyv~v~l~~~~~---~~~kT~v~~~t~nP~wne~f~f~i~~~~l~-~~~l~~~V~d~d~~~~~~~lG~~~i~l~~ 109 (124)
T cd08385 37 SDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFTFKVPYSELG-NKTLVFSVYDFDRFSKHDLIGEVRVPLLT 109 (124)
T ss_pred CCCEEEEEEEcCCC---CceecccCcCCCCCceeeeEEEeCCHHHhC-CCEEEEEEEeCCCCCCCceeEEEEEecCc
Confidence 57799998864432 234566655556789999999998776664 46899999998665556789999999954
No 72
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=96.38 E-value=0.043 Score=50.43 Aligned_cols=74 Identities=12% Similarity=0.204 Sum_probs=55.5
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecc
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (676)
++-||++.+..++.. .-+|..+.-...+.|||.+.|++...+|+ +..|.|+||+...-.+...+|.+.++|=+-
T Consensus 37 ~dpyv~v~l~~~~~~---~~kT~v~~~t~~P~wne~f~f~v~~~~l~-~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~ 110 (124)
T cd08387 37 ADPYCKVRLLPDRSN---TKQSKIHKKTLNPEFDESFVFEVPPQELP-KRTLEVLLYDFDQFSRDECIGVVELPLAEV 110 (124)
T ss_pred CCCeEEEEEecCCCC---cEeCceEcCCCCCCcccEEEEeCCHHHhC-CCEEEEEEEECCCCCCCceeEEEEEecccc
Confidence 567999988655433 23565555456688999999999888774 567999999986655567899999988653
No 73
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=96.30 E-value=0.028 Score=52.40 Aligned_cols=74 Identities=24% Similarity=0.340 Sum_probs=55.2
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (676)
.++-||.+.+..++... ....|+.+.-+.++.|||.+.|++.-.+++ ...|.|+|||.........+|.+.+++
T Consensus 33 ~~DpyV~v~l~~~~~~~-~~~kT~v~~~t~nP~wne~f~f~~~~~~l~-~~~l~~~V~d~d~~~~~~~lG~~~i~l 106 (133)
T cd08384 33 YSDPFVKLYLKPDAGKK-SKHKTQVKKKTLNPEFNEEFFYDIKHSDLA-KKTLEITVWDKDIGKSNDYIGGLQLGI 106 (133)
T ss_pred CCCcEEEEEEEcCCCcc-CCceeeeEeccCCCCcccEEEEECCHHHhC-CCEEEEEEEeCCCCCCccEEEEEEEec
Confidence 35779999987554332 223566555556789999999998877764 567999999976655667899999988
No 74
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=96.23 E-value=0.049 Score=50.92 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=55.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (676)
.++-||++.+..+|+.. ..-+|..+.-+.++.|||.+.|++.-.++.. ..|.|+|||....+....||.+.+++.
T Consensus 34 ~~dpyvkv~l~~~~~~~-~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~-~~l~~~v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 34 FSDPYVKVSLMCEGRRL-KKKKTSVKKNTLNPTYNEALVFDVPPENVDN-VSLIIAVVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred CCCceEEEEEEeCCccc-ceecCCcccCCCCCcccceEEEECCHHHhCC-CEEEEEEEECCCCCCCceeEEEEECCC
Confidence 46779999998776543 2234554443456889999999987666643 568999999876666678999999876
No 75
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=96.21 E-value=0.017 Score=55.67 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=54.4
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEe-ecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWD-VSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~-~~~~~~~~~vG~~~~~LFd 129 (676)
+|=||.+.|..+++... --+|+.+.-+.++.|||.++|+|. +.+..|.|+||+ .....+...+|.+.++|=+
T Consensus 51 sDPYVKv~Llp~~~~~~-k~KT~v~kktlnPvfNE~F~f~v~----l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~ 123 (146)
T cd04028 51 PAPYVKVYLLEGKKCIA-KKKTKIARKTLDPLYQQQLVFDVS----PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDD 123 (146)
T ss_pred cCCeEEEEEECCCcccc-ceeceecCCCCCCccCCeEEEEEc----CCCCEEEEEEEeCCCCCCCCceEEEEEEEccc
Confidence 56699999998776543 235665555567889999999987 578899999994 4443445689999999943
No 76
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.17 E-value=0.022 Score=57.21 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=55.2
Q ss_pred CCCcccccceEecccccCcCccCceEEEEEeecCC----CCceeEeEEEEEeecccc-cccccceeeEeecCC
Q 005800 80 GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG----KDERLVGGTTILLFNSKM-QLKTGKQKLRLWPGK 147 (676)
Q Consensus 80 ~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~----~~~~~vG~~~~~LFd~~~-~Lr~G~~~l~lw~~~ 147 (676)
.+.+.|+|.|.+.|...+. ..+-|.|+++-++.. +.+.|+|-+=++|+..+| +|+.|.+.|.+|...
T Consensus 63 ~~~P~W~EtIKl~lP~~~~-~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~~~gt~l~dG~H~L~vYK~d 134 (196)
T cd08694 63 VDKPKWFETFKVAIPIEDF-KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQENGTTLTDGEHDLIVYKVD 134 (196)
T ss_pred cCCCCCceeEEEecChhhC-CCeEEEEEEEeeccccccCCCCCceEEEEEeeeccCCcEEccCCEEEEEEEec
Confidence 4568899999999998776 678999999987642 234799999999997766 899999999999643
No 77
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=96.16 E-value=0.033 Score=50.45 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=55.5
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
++-||.+.+-..++. ..+|..+.-+.++.|||...|++...++-.++.|.|+|||...-.+...+|.+.+++=+
T Consensus 23 ~Dpyv~v~~~~~~~~---~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~ 96 (111)
T cd04041 23 SDPYVTASFAKFGKP---LYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKE 96 (111)
T ss_pred CCccEEEEEccCCCc---cEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHH
Confidence 566888887654432 23566655556789999999998877776778999999998765555689999998844
No 78
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=96.15 E-value=0.051 Score=49.88 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=51.6
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecc-cccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi-~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
++-||++.+..++.. ..+|+.+.-+..+.|||.+.|++ ...++ .+..|.|+|||.....+...+|.+.++|=+
T Consensus 37 ~dpyv~v~~~~~~~~---~~kT~v~~~t~~P~Wne~f~f~~~~~~~l-~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~ 110 (125)
T cd08386 37 SDPFVKIYLLPDKKH---KLETKVKRKNLNPHWNETFLFEGFPYEKL-QQRVLYLQVLDYDRFSRNDPIGEVSLPLNK 110 (125)
T ss_pred CCceEEEEECCCCCc---ceeeeeecCCCCCccceeEEEcccCHHHh-CCCEEEEEEEeCCCCcCCcEeeEEEEeccc
Confidence 567999888543322 24566555556789999999984 33333 456899999998765556789999999844
No 79
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=96.13 E-value=0.052 Score=45.22 Aligned_cols=66 Identities=23% Similarity=0.450 Sum_probs=49.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEE
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGT 123 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~ 123 (676)
.++.||++.+-..+. .-..|..+.-+..+.|||...|++...++.. |.|.||+.....+...||.+
T Consensus 19 ~~~~yv~v~~~~~~~---~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~---l~~~V~~~~~~~~~~~iG~~ 84 (85)
T PF00168_consen 19 KPDPYVRVSVNGSES---TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS---LSFEVWDKDSFGKDELIGEV 84 (85)
T ss_dssp SBEEEEEEEEETTTC---EEEEECCBSSBSSEEEEEEEEEEESHGCGTE---EEEEEEEETSSSSEEEEEEE
T ss_pred cccccceeecceeee---eeeeeeeeeccccceeeeeeeeeeecccccc---eEEEEEECCCCCCCCEEEEE
Confidence 467888887775444 2345666665677899999999976666665 99999998876667788876
No 80
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=96.05 E-value=0.04 Score=49.83 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=52.5
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccc-ccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCW-NEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~W-newl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.++-||.+.+ ++ ...+|+.+.-+.++.| ||.++|++.-.+| .++.|.|+|||....++...+|.+.++|=+
T Consensus 20 ~~Dpyv~v~~--~~----~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l-~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~ 91 (110)
T cd08688 20 LTDAFVEVKF--GS----TTYKTDVVKKSLNPVWNSEWFRFEVDDEEL-QDEPLQIRVMDHDTYSANDAIGKVYIDLNP 91 (110)
T ss_pred CCCceEEEEE--CC----eeEecceecCCCCCcccCcEEEEEcChHHc-CCCeEEEEEEeCCCCCCCCceEEEEEeHHH
Confidence 3567888876 33 3345665544456899 9999999877775 367899999997665556789999998865
No 81
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=96.05 E-value=0.071 Score=48.79 Aligned_cols=76 Identities=24% Similarity=0.306 Sum_probs=54.5
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecc-cccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi-~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.++-||++.+-.++... ...+|+.+.-+.++.|||.+.|++ .-.++ .++.|.|+|||....++...+|.+.++|=+
T Consensus 36 ~~dpyv~v~l~~~~~~~-~~~kT~v~~~t~nP~wne~f~f~~~~~~~l-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 36 LRNPYVKVYLLPDRSEK-SKRRTKTVKKTLNPEWNQTFEYSNVRRETL-KERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred CCCCEEEEEEccCCCcc-ccccccccCCCCCCccccEEEEcccCHHHh-CCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 35779999886544322 223465555456789999999984 44554 467899999998765566789999999865
No 82
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.03 E-value=0.019 Score=75.93 Aligned_cols=141 Identities=21% Similarity=0.271 Sum_probs=117.2
Q ss_pred EEEEEecCcceeeccCCcceEEEEEecCCCeE--EEEEEeCCchhHHHHHHHHHHHHHHHHHhc----CCCceeeeeEEE
Q 005800 532 LITGIVPSESSIFKSALHPLRLTFRTASGGTC--KMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVL 605 (676)
Q Consensus 532 ~i~~i~~~~~~v~~S~~~Pl~l~f~~~dg~~~--~~IfK~GDDLRQD~lvlQli~lmd~l~~~~----~ldl~l~~Y~Vl 605 (676)
.|..+.|.--.|.+..++-.++..++.||+.| .+-.|.--+=|.+.+++|+++++|..+.+. ...+....-.++
T Consensus 3193 ~I~RF~P~veiv~~~~~~~rRl~iRG~dGk~~~~~~~~~~~~~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~i 3272 (3550)
T KOG0889|consen 3193 KIERFEPRVEIVRGHGMSYRRLYIRGSDGKIYPFAVQYPGLRNSRREERVLQLFRMLNESLGKNKETRRRHLEFKLPIVI 3272 (3550)
T ss_pred hHHHhccchhhhcccceeEEEEEEeccCCeecceeeecccCCCccHHHHHHHHHHHHHHHhccChhhhhhhcCccCceee
Confidence 44555566556777888999999999999988 566676677899999999999999999887 367889999999
Q ss_pred EecCCCceeeeec-cccHHHHHhcc--------------------------------------------------ccHHH
Q 005800 606 ATGQDEGLLEFIP-SRSLAQILSEH--------------------------------------------------RSIIS 634 (676)
Q Consensus 606 ~t~~~~GlIE~V~-s~tl~~I~~~~--------------------------------------------------~~l~~ 634 (676)
|.|+..-++|-.| +.|+.+|.+++ ..+.+
T Consensus 3273 pvs~q~rl~ed~ps~~tl~~I~~~~c~~~~~~~D~~i~~~~d~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~d 3352 (3550)
T KOG0889|consen 3273 PVSSQMRLVEDKPSSITLQEIYEEYCARNNVSPDDPILLYFDRLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSILKD 3352 (3550)
T ss_pred eccCceEEecCCcchhhHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHHHHH
Confidence 9999999999999 89999998762 03567
Q ss_pred HHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCCC
Q 005800 635 YLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDR 676 (676)
Q Consensus 635 ~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGDR 676 (676)
|+.+.|+.+..-+ .-++.|+..+|..+.++|.+.++-|
T Consensus 3353 y~~~tf~~~~d~w----~frk~f~~qla~~~~~~~~lni~~~ 3390 (3550)
T KOG0889|consen 3353 YFYKTFTNYSDFW----TFRKQFTDQLAVFSFMEYMLNINGR 3390 (3550)
T ss_pred HHHHhcCChhhhh----hhHhHHHHHHHHHHHHHHHHhcCCC
Confidence 8888888754322 4589999999999999999998865
No 83
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=96.02 E-value=0.067 Score=49.62 Aligned_cols=74 Identities=22% Similarity=0.303 Sum_probs=54.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEec-ccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecc
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLS-TKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fp-i~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (676)
.++.||.+.+..+.+. ..+|.-+.. .++.|||...|+ +.-.+|. +..|.|+||+...-+....+|.+.++|=+-
T Consensus 36 ~~d~yVk~~llp~~~~---~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~-~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l 110 (124)
T cd08389 36 ASSWQVHLVLLPSKKQ---RAKTKVQRG-PNPVFNETFTFSRVEPEELN-NMALRFRLYGVERMRKERLIGEKVVPLSQL 110 (124)
T ss_pred CCCcEEEEEEccCCcc---eeecccccC-CCCcccCEEEECCCCHHHhc-cCEEEEEEEECCCcccCceEEEEEEecccc
Confidence 3577998776655432 234544444 678899999999 7777766 677999999987655667999999999664
No 84
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=96.02 E-value=0.093 Score=49.13 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=52.5
Q ss_pred CCceEEEEEEEeCCc-ccccceecccccCCCCcccccceEeccccc-CcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 005800 52 RPELYVECALYIDGA-PFGLPMRTRLESMGPMYCWNEPITLSTKYR-DLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~-~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~-dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (676)
.++-||.+.+-..++ +-....+|..+.-+.++.|||.+.|++.-. ....++.|.|+|||....++...+|.+.++|
T Consensus 36 ~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l 113 (133)
T cd04009 36 SSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPL 113 (133)
T ss_pred CCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeH
Confidence 356788888764432 112234565554445688999999997643 3346789999999987655567899998877
No 85
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=95.99 E-value=0.082 Score=48.23 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=56.2
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.++-||.+.+..++... ...+|..+.-+..+.|||.+.|++.-.+|. ...|.|.||+....++...+|.+.++|=+
T Consensus 35 ~~dpyv~v~l~~~~~~~-~~~kT~v~~~t~~P~wne~f~f~i~~~~l~-~~~l~i~v~d~~~~~~~~~iG~~~i~l~~ 110 (123)
T cd08521 35 RSNPYVKVYLLPDKSKQ-SKRKTSVKKNTTNPVFNETLKYHISKSQLE-TRTLQLSVWHHDRFGRNTFLGEVEIPLDS 110 (123)
T ss_pred CCCcEEEEEEecCCCcC-ceeeccccCCCCCCcccceEEEeCCHHHhC-CCEEEEEEEeCCCCcCCceeeEEEEeccc
Confidence 46779999998665432 233565555455689999999998877774 56899999997655556789999998844
No 86
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=95.98 E-value=0.086 Score=48.46 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=56.4
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCC--CCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG--KDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~--~~~~~vG~~~~~LFd 129 (676)
.++-||++.+..++... ..-+|..+.-..++.|||...|++.-.++. +..|.|+||+...- .+...+|.+.++|-+
T Consensus 36 ~~dpyv~v~l~~~~~~~-~~~kT~v~~~~~nP~wne~f~f~i~~~~l~-~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~ 113 (127)
T cd04030 36 IPDPYVRLYLLPDKSKS-TRRKTSVKKDNLNPVFDETFEFPVSLEELK-RRTLDVAVKNSKSFLSREKKLLGQVLIDLSD 113 (127)
T ss_pred CCCceEEEEEEcCCCCC-ceEecccccCCCCCEECeEEEEecCHHHhc-CCEEEEEEEECCcccCCCCceEEEEEEeccc
Confidence 46779999987655422 233565555455789999999998877764 56899999997642 356789999999976
Q ss_pred c
Q 005800 130 S 130 (676)
Q Consensus 130 ~ 130 (676)
-
T Consensus 114 l 114 (127)
T cd04030 114 L 114 (127)
T ss_pred c
Confidence 3
No 87
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=95.96 E-value=0.056 Score=49.39 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=55.3
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
++-||++.+..+++.. .+|..+.-..++.|||.++|+|.-.++. ...|.|.||+....+....+|.+.++|=+
T Consensus 36 ~dpyV~v~l~~~~~~~---~~T~v~~~~~~P~wne~f~f~i~~~~l~-~~~l~i~v~d~~~~~~~~~iG~~~i~L~~ 108 (123)
T cd08390 36 CDPFVKVCLLPDERRS---LQSKVKRKTQNPNFDETFVFQVSFKELQ-RRTLRLSVYDVDRFSRHCIIGHVLFPLKD 108 (123)
T ss_pred CCcEEEEEEeeCCCCc---eEeeeEcCCCCCccceEEEEEcCHHHhc-ccEEEEEEEECCcCCCCcEEEEEEEeccc
Confidence 5679999887655432 3555554455689999999998777774 35799999998766666799999999954
No 88
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.90 E-value=0.067 Score=49.56 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=50.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.+|-||.+.+ ++... ..+|..+.-+..+.|||.+.|++ ..|.++.|.|+|||....+....+|.+.++|=+
T Consensus 20 ~~DPYv~v~~--~~~~~--~~kT~~v~~t~nP~Wne~f~f~~---~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~ 90 (124)
T cd04037 20 KSDPYLKIKL--GKKKI--NDRDNYIPNTLNPVFGKMFELEA---TLPGNSILKISVMDYDLLGSDDLIGETVIDLED 90 (124)
T ss_pred CCCcEEEEEE--CCeec--cceeeEEECCCCCccceEEEEEe---cCCCCCEEEEEEEECCCCCCCceeEEEEEeecc
Confidence 3566887776 44432 12343333345688999999986 457789999999998765566789999998843
No 89
>PLN02222 phosphoinositide phospholipase C 2
Probab=95.85 E-value=0.05 Score=63.07 Aligned_cols=86 Identities=17% Similarity=0.319 Sum_probs=62.9
Q ss_pred CCCceEEEEEEEeCCccc-ccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 51 RRPELYVECALYIDGAPF-GLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l-~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
...+.||+|+|+ |-|- +...+|..+.-...+.|||.++|+|. +|.-|.|+|+|||.........+|+.++|+
T Consensus 477 ~~~dpyV~Vei~--G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~---~PeLAllRf~V~d~D~~~~ddfigq~~lPv-- 549 (581)
T PLN02222 477 SPPDFYTRVGIA--GVPGDTVMKKTKTLEDNWIPAWDEVFEFPLT---VPELALLRLEVHEYDMSEKDDFGGQTCLPV-- 549 (581)
T ss_pred CCCCeeEEEEEe--ccCCCcceeeeEecCCCCCcccCCeeEEEEE---cCceeEEEEEEEECCCCCCCcEEEEEEcch--
Confidence 457889999997 2121 12234554442235789999999986 466699999999975544556899999998
Q ss_pred ccccccccceeeEeec
Q 005800 130 SKMQLKTGKQKLRLWP 145 (676)
Q Consensus 130 ~~~~Lr~G~~~l~lw~ 145 (676)
..||+|...+.|..
T Consensus 550 --~~Lr~GyR~V~L~~ 563 (581)
T PLN02222 550 --WELSQGIRAFPLHS 563 (581)
T ss_pred --hhhhCccceEEccC
Confidence 57999999998853
No 90
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=95.85 E-value=0.078 Score=49.79 Aligned_cols=69 Identities=23% Similarity=0.405 Sum_probs=50.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (676)
.++-||++.+ +|+ ..+|..+.-...+.|||.+.|++ ..++....|.|+|||.....+...||.+.++|=
T Consensus 47 ~~DPYVkV~~--~~~----~~kT~vi~~t~nPvWNE~F~f~~--~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~ 115 (127)
T cd04032 47 STDGYVKVFF--GGQ----EKRTEVIWNNNNPRWNATFDFGS--VELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPE 115 (127)
T ss_pred CCCeEEEEEE--CCc----cccCceecCCCCCcCCCEEEEec--ccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEec
Confidence 3577888865 554 33555544345689999999973 344678899999999876656678999988874
No 91
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.85 E-value=0.038 Score=54.95 Aligned_cols=64 Identities=20% Similarity=0.365 Sum_probs=45.1
Q ss_pred CCcccccceEecccccCcCccCceEEEEEeecCCCC---ceeEeEEEEEeeccccc-ccccceeeEeecC
Q 005800 81 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD---ERLVGGTTILLFNSKMQ-LKTGKQKLRLWPG 146 (676)
Q Consensus 81 ~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~---~~~vG~~~~~LFd~~~~-Lr~G~~~l~lw~~ 146 (676)
+.+.|+|.+.+.+. -+|..++.|.||+|.+..... ..++|.+-++|++ +|+ +..|.+.|.++..
T Consensus 70 k~P~f~deiKi~LP-~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~-~g~~i~dg~~~L~v~~~ 137 (184)
T PF14429_consen 70 KNPQFNDEIKIQLP-PDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD-NGTIIQDGEHELPVYKY 137 (184)
T ss_dssp SS-EEEEEEEEEE--CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB--TS-B--SEEEEEEEEE-
T ss_pred CCCCccEEEEEEcC-chhcccEEEEEEEEeeccccccCccceeEEEEEEeee-CCeEecCCCEEEEEEEc
Confidence 56889999998777 467888999999999875431 2799999999999 776 8999999999853
No 92
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=95.73 E-value=0.072 Score=49.23 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=50.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEeccccc--CcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYR--DLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~--dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.++-||.+.+ +++ ..+|+.+.-+.++.|||.+.|.+.-. +-+....|.|+||+...-+....+|.+.++|=+
T Consensus 19 ~~dpYv~v~l--~~~----~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~ 92 (126)
T cd08682 19 TNDAYVIIQL--GKE----KYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLND 92 (126)
T ss_pred CCCceEEEEE--CCe----eeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHH
Confidence 3567888876 332 23555544445789999999987542 225677899999998654455689999999843
No 93
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=95.72 E-value=0.17 Score=46.28 Aligned_cols=84 Identities=21% Similarity=0.324 Sum_probs=57.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCC-CcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecc
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGP-MYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~-~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (676)
..+-||++.+...+..-.....|....-.. ++.|||.++|++. .|..+.|.|.||+.... ....+|++.++|
T Consensus 24 ~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~---~~~~~~l~~~V~d~~~~-~~~~iG~~~~~l--- 96 (128)
T cd00275 24 IVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVT---VPELAFLRFVVYDEDSG-DDDFLGQACLPL--- 96 (128)
T ss_pred ccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEe---CCCeEEEEEEEEeCCCC-CCcEeEEEEEEh---
Confidence 357799999875442111233454433333 6889999999988 45567899999998765 567899999888
Q ss_pred cccccccceeeEe
Q 005800 131 KMQLKTGKQKLRL 143 (676)
Q Consensus 131 ~~~Lr~G~~~l~l 143 (676)
..|..|...+.+
T Consensus 97 -~~l~~g~~~~~l 108 (128)
T cd00275 97 -DSLRQGYRHVPL 108 (128)
T ss_pred -HHhcCceEEEEe
Confidence 345566655443
No 94
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=95.61 E-value=0.1 Score=43.77 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=53.3
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeeccc
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSK 131 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~ 131 (676)
..+.||++.+.. ....+|....-...+.|||.+.|++.-. ....|.|.||+.........+|.+.+++.+-.
T Consensus 19 ~~~~~v~v~~~~-----~~~~~T~~~~~~~~P~w~~~~~~~~~~~---~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 19 KSDPYVKVSLGG-----KQKFKTKVVKNTLNPVWNETFEFPVLDP---ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred CCCcEEEEEecc-----CceEecceeCCCCCCcccceEEEEccCC---CCCEEEEEEEecCCCCCCceeEEEEEeHHHhh
Confidence 467788888775 1233454444345678999999987664 67889999999877655679999999988754
No 95
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=95.58 E-value=0.083 Score=48.24 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=49.3
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (676)
.++-||.+.+..++ ....+|..+.-+.++.|||.+.|++.-. ..+.|.|+|||.... +...+|.+.++|=
T Consensus 20 ~~Dpyv~v~~~~~~---~~~~kT~vv~~t~nP~Wne~f~f~i~~~---~~~~l~v~v~d~d~~-~~~~iG~~~~~l~ 89 (119)
T cd04036 20 TPDCYVELWLPTAS---DEKKRTKTIKNSINPVWNETFEFRIQSQ---VKNVLELTVMDEDYV-MDDHLGTVLFDVS 89 (119)
T ss_pred CCCcEEEEEEcCCC---CccCccceecCCCCCccceEEEEEeCcc---cCCEEEEEEEECCCC-CCcccEEEEEEHH
Confidence 35678888874222 1234565555445689999999987542 456799999997655 5568999999994
No 96
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=95.51 E-value=0.08 Score=52.42 Aligned_cols=68 Identities=24% Similarity=0.328 Sum_probs=54.1
Q ss_pred CCCCcccccceEecccccCcCccCceEEEEEeecCCC-----CceeEeEEEEEeecc-cccccccceeeEeecCC
Q 005800 79 MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK-----DERLVGGTTILLFNS-KMQLKTGKQKLRLWPGK 147 (676)
Q Consensus 79 ~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~-----~~~~vG~~~~~LFd~-~~~Lr~G~~~l~lw~~~ 147 (676)
..+.+.|+|.+.+.+.. ++..++.|.|++|.+.... ...++|.+-++|++. ...++.|.+.|.+....
T Consensus 61 ~~k~p~f~deiKi~LP~-~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~~~g~~i~dg~~~L~v~k~~ 134 (178)
T cd08679 61 YHKNPVFNDEIKIQLPA-DLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMDKDGAFIKDGDHTLPVYKYD 134 (178)
T ss_pred cCCCCCCceeEEEecCC-ccCCCeEEEEEEEccccccccCCCccceEEEEEEeccccCCcEEcCCCEEEEEEecC
Confidence 33568899999988744 5557899999999987443 357999999999995 45578899999998754
No 97
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=95.38 E-value=0.048 Score=49.69 Aligned_cols=69 Identities=22% Similarity=0.311 Sum_probs=51.4
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
++-||.+.+-.+ ....+|..+.-+..+.|||.+.|++. +.+..|.|+|||.........+|.+.++|=+
T Consensus 24 ~dpyv~v~~~~~----~~~~kT~~~~~~~~P~Wne~~~~~v~----~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~ 92 (124)
T cd04044 24 VDPYVTFSISNR----RELARTKVKKDTSNPVWNETKYILVN----SLTEPLNLTVYDFNDKRKDKLIGTAEFDLSS 92 (124)
T ss_pred CCCeEEEEECCC----CcceEeeeecCCCCCcceEEEEEEeC----CCCCEEEEEEEecCCCCCCceeEEEEEEHHH
Confidence 466888877432 23345655554557899999999876 5678999999998766566789999999765
No 98
>PLN02952 phosphoinositide phospholipase C
Probab=95.28 E-value=0.12 Score=60.36 Aligned_cols=85 Identities=18% Similarity=0.341 Sum_probs=61.3
Q ss_pred CCCceEEEEEEEeCCccc-ccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 51 RRPELYVECALYIDGAPF-GLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l-~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
..+|.||+++++ |-|. +...+|..+.-.-++.|||.++|+|.. |.-|.|+|+|||.........+|++++||
T Consensus 495 ~~~D~yV~V~i~--G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~---PELAllrf~V~D~D~~~~ddfiGq~~lPv-- 567 (599)
T PLN02952 495 SPPDFYTKMYIV--GVPADNAKKKTKIIEDNWYPAWNEEFSFPLTV---PELALLRIEVREYDMSEKDDFGGQTCLPV-- 567 (599)
T ss_pred CCCCceEEEEEe--ccCCCCcceeeeeccCCCCcccCCeeEEEEEc---CCccEEEEEEEecCCCCCCCeEEEEEcch--
Confidence 456889999998 2221 122345443322357799999999875 66799999999976555566899999999
Q ss_pred ccccccccceeeEee
Q 005800 130 SKMQLKTGKQKLRLW 144 (676)
Q Consensus 130 ~~~~Lr~G~~~l~lw 144 (676)
..||+|...+.|.
T Consensus 568 --~~Lr~GyR~VpL~ 580 (599)
T PLN02952 568 --SELRPGIRSVPLH 580 (599)
T ss_pred --hHhcCCceeEeCc
Confidence 5789999887764
No 99
>PLN02223 phosphoinositide phospholipase C
Probab=95.26 E-value=0.1 Score=59.80 Aligned_cols=85 Identities=22% Similarity=0.446 Sum_probs=60.7
Q ss_pred CCCceEEEEEEEeCCccc-ccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 51 RRPELYVECALYIDGAPF-GLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l-~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
..+|.||+++|+ |-|- +...+|....=+-.+.|||..+|+|.. |.-|.|.|+|||.....+...+|.+++|+
T Consensus 433 s~~DpyV~VeI~--Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~---PELAlLrf~V~D~D~~~~ddfiGQ~~LPv-- 505 (537)
T PLN02223 433 SKPDLYVRISIA--GVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTY---PDLALISFEVYDYEVSTADAFCGQTCLPV-- 505 (537)
T ss_pred CCCCeEEEEEEe--eccCCcceeEEEeCCCCcCceecceeEEEEEc---cCceEEEEEEEecCCCCCCcEEEEEecch--
Confidence 457889999997 2121 122234322112247799999999864 77899999999987655566899999998
Q ss_pred ccccccccceeeEee
Q 005800 130 SKMQLKTGKQKLRLW 144 (676)
Q Consensus 130 ~~~~Lr~G~~~l~lw 144 (676)
..||+|...+.|.
T Consensus 506 --~~Lr~GyR~VpL~ 518 (537)
T PLN02223 506 --SELIEGIRAVPLY 518 (537)
T ss_pred --HHhcCCceeEecc
Confidence 5789999888775
No 100
>PLN02230 phosphoinositide phospholipase C 4
Probab=95.23 E-value=0.097 Score=60.90 Aligned_cols=86 Identities=16% Similarity=0.315 Sum_probs=62.3
Q ss_pred CCCceEEEEEEEeCCccc-ccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 51 RRPELYVECALYIDGAPF-GLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l-~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
...+.||+|+|+- .|- +...+|....=+-.+.|||..+|++. +|.-|.|.|.|||.....+...+|++++|+
T Consensus 494 s~~DpyV~Vei~G--vp~D~~~~kT~v~~n~~nP~Wneef~F~l~---vPELAllRf~V~d~d~~~~ddfiGQ~~lPv-- 566 (598)
T PLN02230 494 SPPDFFVRVGIAG--APVDEVMEKTKIEYDTWTPIWNKEFIFPLA---VPELALLRVEVHEHDINEKDDFGGQTCLPV-- 566 (598)
T ss_pred CCCCceEEEEEEE--CCCCCcccceeccCCCCCCccCCeeEEEEE---cCceeEEEEEEEECCCCCCCCEEEEEEcch--
Confidence 3578899999983 221 11224442111224789999999977 477899999999976655567899999998
Q ss_pred ccccccccceeeEeec
Q 005800 130 SKMQLKTGKQKLRLWP 145 (676)
Q Consensus 130 ~~~~Lr~G~~~l~lw~ 145 (676)
..||+|...+.|..
T Consensus 567 --~~Lr~GyR~V~L~~ 580 (598)
T PLN02230 567 --SEIRQGIHAVPLFN 580 (598)
T ss_pred --HHhhCccceEeccC
Confidence 46999999988853
No 101
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=95.17 E-value=0.16 Score=46.52 Aligned_cols=73 Identities=23% Similarity=0.220 Sum_probs=51.5
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEec-ccccCcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLS-TKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fp-i~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (676)
.++.||++.+..++... ...+|....-+.++.|||.+.|+ +.-.++ .+..|.|+|||.... ....+|.+.++|
T Consensus 35 ~~dpyv~v~~~~~~~~~-~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~-~~~~l~~~v~d~~~~-~~~~iG~~~i~l 108 (123)
T cd04035 35 LSDPYVKLNLLPGASKA-TKLRTKTVHKTRNPEFNETLTYYGITEEDI-QRKTLRLLVLDEDRF-GNDFLGETRIPL 108 (123)
T ss_pred CCCceEEEEEecCCCCC-CceeeeeecCCCCCCccceEEEcCCCHHHh-CCCEEEEEEEEcCCc-CCeeEEEEEEEc
Confidence 46789999987554432 23466665545578999999996 332332 245799999998765 567899999988
No 102
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.16 E-value=0.17 Score=47.00 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=50.5
Q ss_pred CCceEEEEEEEeC--CcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYID--GAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~--~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.++-||.+.+... ++... ..+|..+.-+.++.|||.+.|++. +.+..|.|+|||....++...+|.+.+++=+
T Consensus 20 ~~Dpyv~v~~~~~~~~~~~~-~~kT~v~~~t~nP~Wne~f~f~~~----~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 94 (133)
T cd04033 20 ASDPYVKISLYDPDGNGEID-SVQTKTIKKTLNPKWNEEFFFRVN----PREHRLLFEVFDENRLTRDDFLGQVEVPLNN 94 (133)
T ss_pred CcCcEEEEEEECCCCCCccc-ceeeeEEcCCCCCcEeeEEEEEEc----CCCCEEEEEEEECCCCCCCCeeEEEEEEHHH
Confidence 3566999988743 22221 235554443456889999999874 3357899999998765556789999998754
No 103
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=95.13 E-value=0.13 Score=47.15 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=50.6
Q ss_pred CCceEEEEEEEeCCcccccceecccc-cCCCCcccccceEecccccCc-CccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLE-SMGPMYCWNEPITLSTKYRDL-TAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~-~~~~~~~Wnewl~fpi~~~dL-P~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
..+-||.+.+.. ....+|... .-+..+.|||.+.|++.-..| ...+.|.|.||+.....+...+|++.++|=+
T Consensus 20 ~~dpYv~v~~~~-----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 94 (125)
T cd04051 20 KMKVYAVVWIDP-----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKD 94 (125)
T ss_pred CCceEEEEEECC-----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHH
Confidence 456788877643 122344432 223568899999998865544 4578899999997654455689999999866
Q ss_pred c
Q 005800 130 S 130 (676)
Q Consensus 130 ~ 130 (676)
-
T Consensus 95 l 95 (125)
T cd04051 95 L 95 (125)
T ss_pred h
Confidence 3
No 104
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=95.06 E-value=0.16 Score=46.80 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=52.4
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeeccc
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSK 131 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~ 131 (676)
.++-||.+.+ +++.. .+|..+.-..++.|||.+.|++.- .+..|.|+||+.........||.+.++|=+--
T Consensus 21 ~~DPYv~v~~--~~~~~---~kT~~~~~t~~P~Wne~f~~~v~~----~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~ 91 (120)
T cd04045 21 KIDPYVRVLV--NGIVK---GRTVTISNTLNPVWDEVLYVPVTS----PNQKITLEVMDYEKVGKDRSLGSVEINVSDLI 91 (120)
T ss_pred CcCCEEEEEE--CCEEe---eceeEECCCcCCccCceEEEEecC----CCCEEEEEEEECCCCCCCCeeeEEEEeHHHhh
Confidence 3566888876 44322 234444445568999999888653 24689999999876555678999999965431
Q ss_pred ccccccceee
Q 005800 132 MQLKTGKQKL 141 (676)
Q Consensus 132 ~~Lr~G~~~l 141 (676)
..-..|.+.|
T Consensus 92 ~~~~~~~~~~ 101 (120)
T cd04045 92 KKNEDGKYVE 101 (120)
T ss_pred CCCCCceEEe
Confidence 1123444444
No 105
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.04 E-value=0.16 Score=45.43 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=48.3
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.++-||.+.+ ++ ....|+.+.-+..+.|||.+.|++.- |..+.|.|+|||... ...+|.+.++|-+
T Consensus 20 ~~dpyv~v~~--~~----~~~kT~v~~~t~nP~Wne~f~f~v~~---~~~~~l~v~v~d~~~---~~~iG~~~i~l~~ 85 (105)
T cd04050 20 EPSPYVELTV--GK----TTQKSKVKERTNNPVWEEGFTFLVRN---PENQELEIEVKDDKT---GKSLGSLTLPLSE 85 (105)
T ss_pred CCCcEEEEEE--CC----EEEeCccccCCCCCcccceEEEEeCC---CCCCEEEEEEEECCC---CCccEEEEEEHHH
Confidence 4677888877 44 23355554445578999999999853 567789999999754 4579999999864
No 106
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=95.00 E-value=0.085 Score=47.86 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=49.7
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
+|-||.+.+ +++. .+|..+.-..++.|||.+.|++. +...+..|.|.|||....+....||.+.++|=.
T Consensus 26 ~DPYv~v~~--~~~~----~kT~v~~~t~nPvWne~f~f~v~--~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~ 94 (108)
T cd04039 26 MDPFVIISF--GRRV----FRTSWRRHTLNPVFNERLAFEVY--PHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQE 94 (108)
T ss_pred cCceEEEEE--CCEe----EeeeeecCCCCCcccceEEEEEe--CccCCCEEEEEEEECCCCCCCcceEEEEEEHHH
Confidence 455887775 4332 25665555567899999999875 333456899999998766566789999998854
No 107
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=94.97 E-value=0.2 Score=48.30 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=49.9
Q ss_pred CCceEEEEEEEeCCcccccceecccccC-CCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecc
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESM-GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~-~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (676)
.++-||.+.+ |++ ..+|....- +..+.|||.++|++. + |.++.|+|+||+.........+|.+.++|=+-
T Consensus 20 ~sDPYV~v~l--~~~----~~kTk~~~~~t~nP~WNE~F~f~v~--~-~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l 90 (150)
T cd04019 20 VPEVFVKAQL--GNQ----VLRTRPSQTRNGNPSWNEELMFVAA--E-PFEDHLILSVEDRVGPNKDEPLGRAVIPLNDI 90 (150)
T ss_pred CCCeEEEEEE--CCE----EeeeEeccCCCCCCcccCcEEEEec--C-ccCCeEEEEEEEecCCCCCCeEEEEEEEHHHC
Confidence 4677998887 343 223443322 356899999999873 2 55689999999987654557999999998763
No 108
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=94.95 E-value=0.22 Score=46.00 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=48.5
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCC--ceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD--ERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~--~~~vG~~~~~LFd 129 (676)
.++-||.+.+ +|. ...+|....-+.++.|||.++|++.. +..|.|+|||...... ...+|.+.+++=+
T Consensus 20 ~~dpyv~v~~--~~~---~~~kT~v~~~t~nP~Wne~f~~~~~~-----~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~ 89 (123)
T cd08382 20 LPDPFAVITV--DGG---QTHSTDVAKKTLDPKWNEHFDLTVGP-----SSIITIQVFDQKKFKKKDQGFLGCVRIRANA 89 (123)
T ss_pred CCCcEEEEEE--CCc---cceEccEEcCCCCCcccceEEEEeCC-----CCEEEEEEEECCCCCCCCCceEeEEEEEHHH
Confidence 3566887775 442 23355544444578999999999853 6799999999765432 4689999998866
Q ss_pred c
Q 005800 130 S 130 (676)
Q Consensus 130 ~ 130 (676)
-
T Consensus 90 l 90 (123)
T cd08382 90 V 90 (123)
T ss_pred c
Confidence 3
No 109
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.92 E-value=0.092 Score=50.82 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=52.8
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.+|-||++.+ +|+. .+|+.+.-+.++.|||.+.||+...++ +..|.|+|||.....+...+|.+.++|-+
T Consensus 34 ~~DPYV~V~~--~g~~----~kT~v~~~t~nPvWNE~f~f~v~~p~~--~~~l~~~v~D~d~~~~dd~iG~~~l~l~~ 103 (151)
T cd04018 34 LVDPYVEVSF--AGQK----VKTSVKKNSYNPEWNEQIVFPEMFPPL--CERIKIQIRDWDRVGNDDVIGTHFIDLSK 103 (151)
T ss_pred CcCcEEEEEE--CCEe----eecceEcCCCCCCcceEEEEEeeCCCc--CCEEEEEEEECCCCCCCCEEEEEEEeHHH
Confidence 3577998874 4543 466665555578999999999876543 46899999998765566789999999875
No 110
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=94.89 E-value=0.14 Score=47.36 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=48.4
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCC-CceeEeEEEEEee
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK-DERLVGGTTILLF 128 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~-~~~~vG~~~~~LF 128 (676)
.++-||.+.+ +++ ..+|+.+.-+.++.|||.+.|++.-..-..+..|.|+||+..... ....+|.+.++|=
T Consensus 20 ~~dpyv~v~~--~~~----~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~ 91 (127)
T cd04022 20 SSSAYVELDF--DGQ----KKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGT 91 (127)
T ss_pred CcCcEEEEEE--CCE----EecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHH
Confidence 3566877654 443 234554443456889999999976443334678999999975543 4568999999883
No 111
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=94.82 E-value=0.21 Score=48.74 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=52.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecc-cccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi-~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (676)
.++-||.+.+..++... ...+|..+.-+.++.|||.+.|++ ...++ .+..|.|+|||...-++...+|.+.+++=
T Consensus 47 ~~DPYVkv~l~~~~~~~-~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l-~~~~L~i~V~d~d~~~~d~~lG~v~i~l~ 122 (162)
T cd04020 47 TSDSFVKCYLLPDKSKK-SKQKTPVVKKSVNPVWNHTFVYDGVSPEDL-SQACLELTVWDHDKLSSNDFLGGVRLGLG 122 (162)
T ss_pred CCCCEEEEEEEcCCCCC-cceeCCccCCCCCCCCCCEEEEecCCHHHh-CCCEEEEEEEeCCCCCCCceEEEEEEeCC
Confidence 35669999887554322 123455443345688999999984 45666 35689999999876555678999998873
No 112
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=94.78 E-value=0.22 Score=45.54 Aligned_cols=68 Identities=21% Similarity=0.369 Sum_probs=47.0
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
+|-||.+.+ +++.. .+|....-+.++.|||.+.|++. ++ +..|.|+|||.....+...+|.+.++|=+
T Consensus 21 ~Dpyv~v~~--~~~~~---~kT~~~~~t~nP~Wne~f~f~v~--~~--~~~l~~~v~D~d~~~~~~~iG~~~~~l~~ 88 (121)
T cd04042 21 SDPYVKFKY--GGKTV---YKSKTIYKNLNPVWDEKFTLPIE--DV--TQPLYIKVFDYDRGLTDDFMGSAFVDLST 88 (121)
T ss_pred CCCeEEEEE--CCEEE---EEeeeccCCCCCccceeEEEEec--CC--CCeEEEEEEeCCCCCCCcceEEEEEEHHH
Confidence 466887764 44332 23333333446889999999864 32 57899999998765566789999999843
No 113
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=94.77 E-value=0.25 Score=46.66 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=49.7
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.+|-||.+.+ ++.. .+|..+.-+.++.|||.+.|++. + +.+..|.|.|||.....+...+|.++++|=+
T Consensus 35 ~~DPYv~v~~--~~~~----~kT~vi~~t~nP~Wne~f~f~v~--~-~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~ 103 (136)
T cd08375 35 KSDPYCEVSM--GSQE----HKTKVVSDTLNPKWNSSMQFFVK--D-LEQDVLCITVFDRDFFSPDDFLGRTEIRVAD 103 (136)
T ss_pred CcCcEEEEEE--CCEe----eeccccCCCCCCccCceEEEEec--C-ccCCEEEEEEEECCCCCCCCeeEEEEEEHHH
Confidence 3566888765 4432 35555554556899999999874 3 4467999999997654455799999999955
No 114
>PLN02228 Phosphoinositide phospholipase C
Probab=94.67 E-value=0.2 Score=58.01 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=61.2
Q ss_pred CCCceEEEEEEEeCCcccc-cceecccccCCCCccc-ccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 005800 51 RRPELYVECALYIDGAPFG-LPMRTRLESMGPMYCW-NEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (676)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~-~p~~T~~~~~~~~~~W-newl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (676)
...+.||+++|+- -|.. ...+|..+.-...+.| ||..+|++. +|.-|.|.|+|+|.........+|+.++++
T Consensus 456 ~~~DpyV~Vei~G--~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~---~pELA~lRf~V~D~d~~~~d~figq~~lPv- 529 (567)
T PLN02228 456 SPPDFFVKIGIAG--VPRDTVSYRTETAVDQWFPIWGNDEFLFQLR---VPELALLWFKVQDYDNDTQNDFAGQTCLPL- 529 (567)
T ss_pred CCCCcEEEEEEEe--cCCCCCcceeeccCCCCCceECCCeEEEEEE---cCceeEEEEEEEeCCCCCCCCEEEEEEcch-
Confidence 4478899999972 1211 1224443221225789 999999976 577899999999976544556889999998
Q ss_pred cccccccccceeeEee
Q 005800 129 NSKMQLKTGKQKLRLW 144 (676)
Q Consensus 129 d~~~~Lr~G~~~l~lw 144 (676)
..||+|...+.|.
T Consensus 530 ---~~Lr~GYR~VpL~ 542 (567)
T PLN02228 530 ---PELKSGVRAVRLH 542 (567)
T ss_pred ---hHhhCCeeEEEcc
Confidence 5789999999885
No 115
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=94.65 E-value=0.39 Score=44.47 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=51.1
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (676)
.+-||++.+-..+.. ...-+|..+.-...+.|||.+.|++.-.+ .+..|.|+||+.....+...+|.+.++|=
T Consensus 34 ~dpyv~v~~~~~~~~-~~~~rT~v~~~~~~P~wne~f~~~~~~~~--~~~~l~v~v~d~~~~~~~~~iG~~~~~l~ 106 (131)
T cd04026 34 SDPYVKLKLIPDPKN-ETKQKTKTIKKTLNPVWNETFTFDLKPAD--KDRRLSIEVWDWDRTTRNDFMGSLSFGVS 106 (131)
T ss_pred CCCcEEEEEEcCCCC-CceecceeecCCCCCCccceEEEeCCchh--cCCEEEEEEEECCCCCCcceeEEEEEeHH
Confidence 567898888643321 12334554444456899999999976544 35789999999765455679999999973
No 116
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=94.49 E-value=0.34 Score=43.76 Aligned_cols=68 Identities=24% Similarity=0.357 Sum_probs=49.1
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
++-||.+.+ +++ ..+|+.+.-+.++.|||.+.|++.- +.+..|.|+|||.....+...+|.+.++|=+
T Consensus 21 ~dPyv~v~~--~~~----~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~ 88 (116)
T cd08376 21 SDPYVKFRL--GNE----KYKSKVCSKTLNPQWLEQFDLHLFD---DQSQILEIEVWDKDTGKKDEFIGRCEIDLSA 88 (116)
T ss_pred CCcEEEEEE--CCE----eEecccccCCCCCceeEEEEEEecC---CCCCEEEEEEEECCCCCCCCeEEEEEEeHHH
Confidence 456888776 443 2345544445568899999998652 2478999999998765566799999999854
No 117
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=94.48 E-value=0.32 Score=43.82 Aligned_cols=69 Identities=23% Similarity=0.376 Sum_probs=49.6
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
++-||.+.+ +++. .-+|..+.-+..+.|||.+.|++.-. .+..+.|.||+.....+...||.+.+++=+
T Consensus 20 ~dpyv~v~~--~~~~---~~~T~v~~~~~~P~Wne~f~~~~~~~---~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (115)
T cd04040 20 SDPFVKFYL--NGEK---VFKTKTIKKTLNPVWNESFEVPVPSR---VRAVLKVEVYDWDRGGKDDLLGSAYIDLSD 88 (115)
T ss_pred CCCeEEEEE--CCCc---ceeeceecCCCCCcccccEEEEeccC---CCCEEEEEEEeCCCCCCCCceEEEEEEHHH
Confidence 456888776 3322 23555554455689999999986532 567899999998765566789999999866
No 118
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=94.40 E-value=0.39 Score=43.99 Aligned_cols=68 Identities=19% Similarity=0.323 Sum_probs=48.3
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
++-||.+.+ ++.. .+|..+.-+.++.|||.+.|++.-. .++.|.|+|||....++...+|.+.++|=+
T Consensus 21 ~DPyv~v~~--~~~~----~kT~v~~~t~nP~Wne~f~f~~~~~---~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (123)
T cd04025 21 SDPFVRVFY--NGQT----LETSVVKKSCYPRWNEVFEFELMEG---ADSPLSVEVWDWDLVSKNDFLGKVVFSIQT 88 (123)
T ss_pred cCceEEEEE--CCEE----EeceeecCCCCCccCcEEEEEcCCC---CCCEEEEEEEECCCCCCCcEeEEEEEEHHH
Confidence 455777765 4432 2454444445688999999997653 378899999997655556789999999843
No 119
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.24 E-value=0.35 Score=44.62 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=47.1
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (676)
++-||.+.+ ++. +.+|....-...+.|||.+.|++.-.. .....|.|+||+.........+|.+.++|
T Consensus 15 ~Dpyv~v~~--~~~----~~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~~~~d~~iG~~~~~l 82 (127)
T cd08373 15 GDRIAKVTF--RGV----KKKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEKVGRNRLIGSATVSL 82 (127)
T ss_pred CCCEEEEEE--CCE----eeecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCCCCCCceEEEEEEEh
Confidence 455777765 443 345655444456889999999975433 46778999999987654556788887765
No 120
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=94.18 E-value=0.22 Score=49.87 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=52.7
Q ss_pred CCCcccccceEecccccCcCccCceEEEEEeecCC---------CCceeEeEEEEEeecccccccccceeeEeec
Q 005800 80 GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG---------KDERLVGGTTILLFNSKMQLKTGKQKLRLWP 145 (676)
Q Consensus 80 ~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~---------~~~~~vG~~~~~LFd~~~~Lr~G~~~l~lw~ 145 (676)
.+.+.|+|.|.+.+.. +|....-|-||+|.++.. ..++++|-+-++|+...++|..|.+.|.+-.
T Consensus 66 ~k~P~f~dEiKI~LP~-~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~~~~~l~~g~~~LpV~~ 139 (185)
T cd08697 66 NQNPEFYDEIKIELPT-QLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLKDKGRLNSEEQTPPVAN 139 (185)
T ss_pred CCCCccceeEEEecCC-cCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeecCCCEEecCCEeeeEEe
Confidence 4568899998876665 456788999999998621 1246899999999998999999999998864
No 121
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=94.14 E-value=0.2 Score=46.41 Aligned_cols=66 Identities=30% Similarity=0.504 Sum_probs=47.9
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (676)
++-||.+.+ +++ ...+|....-...+.|||.+.|++. ....|.|+|||....+....+|.+.++|=
T Consensus 22 ~dPyv~v~~--~~~---~~~kT~v~~~t~~P~Wne~f~~~~~-----~~~~l~~~V~d~~~~~~~~~iG~~~i~l~ 87 (125)
T cd04021 22 PDPYVEVTV--DGQ---PPKKTEVSKKTSNPKWNEHFTVLVT-----PQSTLEFKVWSHHTLKADVLLGEASLDLS 87 (125)
T ss_pred CCeEEEEEE--CCc---ccEEeeeeCCCCCCccccEEEEEeC-----CCCEEEEEEEeCCCCCCCcEEEEEEEEHH
Confidence 566887766 454 2334544444457899999999864 45789999999876556679999999973
No 122
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=94.08 E-value=0.19 Score=46.80 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=47.7
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.++-||.+.+ +++.. -+|+.+.-+..+.|||..+|++. ..+.|.|.||+-........+|.+.++|=+
T Consensus 34 ~~dpyv~v~~--~~~~~---~kT~~~~~t~~P~Wne~f~~~v~-----~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 101 (132)
T cd04014 34 LLDPYVSIDV--DDTHI---GKTSTKPKTNSPVWNEEFTTEVH-----NGRNLELTVFHDAAIGPDDFVANCTISFED 101 (132)
T ss_pred CcCcEEEEEE--CCEEE---eEEeEcCCCCCCCcceeEEEEcC-----CCCEEEEEEEeCCCCCCCceEEEEEEEhHH
Confidence 4577888876 45432 13333333456889999999985 568999999986544445689999999854
No 123
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=94.00 E-value=0.49 Score=44.36 Aligned_cols=68 Identities=24% Similarity=0.250 Sum_probs=48.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCC------CCceeEeEEEE
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG------KDERLVGGTTI 125 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~------~~~~~vG~~~~ 125 (676)
.++-||.+.+ |++. .+|+.+.-+.++.|||...|++.- .++.|.|+|||...- .....+|-+.+
T Consensus 23 ~sDPYv~i~~--g~~~----~rTk~~~~~~nP~WnE~f~f~v~~----~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i 92 (126)
T cd08379 23 STDAYCVAKY--GPKW----VRTRTVEDSSNPRWNEQYTWPVYD----PCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRI 92 (126)
T ss_pred CCCeeEEEEE--CCEE----eEcCcccCCCCCcceeEEEEEecC----CCCEEEEEEEECCCccccccCCCCceEEEEEE
Confidence 4677988885 5553 356555545678999999999752 235899999997653 24568999999
Q ss_pred Eeec
Q 005800 126 LLFN 129 (676)
Q Consensus 126 ~LFd 129 (676)
+|=+
T Consensus 93 ~l~~ 96 (126)
T cd08379 93 RLST 96 (126)
T ss_pred EHHH
Confidence 8644
No 124
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=94.00 E-value=0.16 Score=46.57 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=53.0
Q ss_pred CceEEEEEEEeCC-cccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecC----CCCceeEeEEEEEe
Q 005800 53 PELYVECALYIDG-APFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSC----GKDERLVGGTTILL 127 (676)
Q Consensus 53 ~~l~V~~~l~~~~-~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~----~~~~~~vG~~~~~L 127 (676)
++-||.+.+..+. .......+|..+.-..++.|||.+.|++.. +....|.|.|||... .++...+|.+.+++
T Consensus 21 ~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~---~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l 97 (120)
T cd04048 21 SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYF---EEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTL 97 (120)
T ss_pred CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEe---EeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEH
Confidence 4668888876543 112233467666655678999999999654 455689999999875 44567899999998
Q ss_pred ec
Q 005800 128 FN 129 (676)
Q Consensus 128 Fd 129 (676)
=+
T Consensus 98 ~~ 99 (120)
T cd04048 98 GE 99 (120)
T ss_pred HH
Confidence 65
No 125
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=93.95 E-value=0.54 Score=45.76 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=54.3
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEeccccc------CcCccCceEEEEEeecCC-CCceeEeEEE
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYR------DLTAHSQLALTVWDVSCG-KDERLVGGTT 124 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~------dLP~~a~L~~ti~~~~~~-~~~~~vG~~~ 124 (676)
.+|-||...+...+.. ....+|+.+.-+.++.|||..+|+|.-. .+++.+ |.|+||+..+- .....+|.+.
T Consensus 24 ~~DpYVk~~l~~p~~~-~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~-L~~~V~d~~~f~~~D~~iG~~~ 101 (155)
T cd08690 24 DLDTYVKFEFPYPNEE-PQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHG-LKFEVYHKGGFLRSDKLLGTAQ 101 (155)
T ss_pred CCCeEEEEEEecCCCC-CceeecCcccCCCCCcccceEEEEeccccchhhhhccCCc-EEEEEEeCCCcccCCCeeEEEE
Confidence 4688999997544321 1234676666667789999999998655 477654 99999997642 3456899998
Q ss_pred EEeec
Q 005800 125 ILLFN 129 (676)
Q Consensus 125 ~~LFd 129 (676)
++|=+
T Consensus 102 i~L~~ 106 (155)
T cd08690 102 VKLEP 106 (155)
T ss_pred EEccc
Confidence 88754
No 126
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=93.91 E-value=0.23 Score=44.73 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=49.8
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccC-cCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRD-LTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~d-LP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
++-||.+.+- ++ ..+|..+.-+.++.|||.+.|++.... -..++.|.|+|||.....+...+|.++++|=+
T Consensus 21 ~dpyv~v~~~--~~----~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 92 (111)
T cd04011 21 IDPVVKVEVG--GQ----KKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGT 92 (111)
T ss_pred CCCEEEEEEC--CE----eeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCcc
Confidence 5668877764 43 234555444456889999999976533 22367899999997655455789999999865
No 127
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=93.86 E-value=0.49 Score=43.89 Aligned_cols=69 Identities=17% Similarity=0.342 Sum_probs=47.5
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecc
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (676)
++-||.+.+ ++... .+|..+. +.++.|||.+.|++.-.++ ..+.|.||+-....+...||.+.++|-+-
T Consensus 22 ~DPYv~v~l--~~~~~---~kT~v~~-~~nP~WnE~f~f~~~~~~~---~~l~v~v~d~~~~~~d~~iG~v~i~l~~l 90 (126)
T cd08400 22 PHPYCVISL--NEVKV---ARTKVRE-GPNPVWSEEFVFDDLPPDV---NSFTISLSNKAKRSKDSEIAEVTVQLSKL 90 (126)
T ss_pred CCeeEEEEE--CCEeE---EEeecCC-CCCCccCCEEEEecCCCCc---CEEEEEEEECCCCCCCCeEEEEEEEHhHc
Confidence 566888888 44332 2344333 3568899999998533222 46889999976655667999999998753
No 128
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=93.73 E-value=0.55 Score=43.06 Aligned_cols=70 Identities=21% Similarity=0.205 Sum_probs=46.7
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (676)
.++.||.+.+ ++.. ....+|..+.-+.++.|||.+.|++.-. ....|.|+||+.....+...+|.+.++|
T Consensus 21 ~~Dpyv~v~~--~~~~-~~~~kT~~~~~t~~P~Wne~f~f~i~~~---~~~~L~i~v~d~d~~~~~~~iG~~~i~l 90 (126)
T cd04043 21 LSDPYVTLVD--TNGK-RRIAKTRTIYDTLNPRWDEEFELEVPAG---EPLWISATVWDRSFVGKHDLCGRASLKL 90 (126)
T ss_pred CCCceEEEEE--CCCC-eeeecccEecCCCCCcccceEEEEcCCC---CCCEEEEEEEECCCCCCCceEEEEEEec
Confidence 3566887653 2211 0122444443345688999999987542 4678999999987655667899999987
No 129
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=93.71 E-value=0.5 Score=43.28 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=48.6
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
++-||.+.+ ++.. .+|+.+.-+.++.|||.+.|++.- +.+..|.|+|||.....+...+|.++++|=+
T Consensus 24 ~dPyv~v~~--~~~~----~kT~~~~~t~~P~Wne~f~~~~~~---~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~ 91 (128)
T cd04024 24 SDPYAILSV--GAQR----FKTQTIPNTLNPKWNYWCEFPIFS---AQNQLLKLILWDKDRFAGKDYLGEFDIALEE 91 (128)
T ss_pred cCCeEEEEE--CCEE----EecceecCCcCCccCCcEEEEecC---CCCCEEEEEEEECCCCCCCCcceEEEEEHHH
Confidence 455776654 4432 355554445568899999988753 5678999999998765456789999999855
No 130
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=93.67 E-value=0.21 Score=58.67 Aligned_cols=108 Identities=20% Similarity=0.323 Sum_probs=70.8
Q ss_pred eEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccC-CCCcccccceEeccccc
Q 005800 18 VKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESM-GPMYCWNEPITLSTKYR 96 (676)
Q Consensus 18 ~~~ki~~leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~-~~~~~Wnewl~fpi~~~ 96 (676)
++|||.+=+|..+.... +.......+.++|+ .+|-.-=|.-.+|.++.- +-.+.|+|..+|++.+.
T Consensus 618 L~IkI~sGq~~~~~~~~----------~~~~~~~dP~v~Ve---I~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vP 684 (746)
T KOG0169|consen 618 LKIKIISGQGWLPDFGK----------TKFGEISDPDVYVE---IAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVP 684 (746)
T ss_pred eEEEEEecCcccCCCCC----------CcccccCCCCEEEE---EcccccchhhhhceeeccCCcCcccCCeEEEEEecc
Confidence 56666666665442110 11223344677777 233222222334553331 12467999999999887
Q ss_pred CcCccCceEEEEEeecCCCCceeEeEEEEEeecccccccccceeeEeec
Q 005800 97 DLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWP 145 (676)
Q Consensus 97 dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~~Lr~G~~~l~lw~ 145 (676)
+| |.|.|.|+|.....+.-.+|-+++|+ ..|++|...+++.-
T Consensus 685 EL---AliRF~V~d~d~~~~ddF~GQ~tlP~----~~L~~GyRhVpL~~ 726 (746)
T KOG0169|consen 685 EL---ALIRFEVHDYDYIGKDDFIGQTTLPV----SELRQGYRHVPLLS 726 (746)
T ss_pred ce---eEEEEEEEecCCCCcccccceeeccH----HHhhCceeeeeecC
Confidence 76 88999999988776677899999998 57999999998853
No 131
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=93.63 E-value=0.23 Score=45.86 Aligned_cols=70 Identities=13% Similarity=0.219 Sum_probs=50.2
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.+|-||.+.+ ++. ....+|..+.-+.++.|||-+.|++. +.+..|.|.|||.....+...+|.+.++|=+
T Consensus 17 ~~dpyv~v~~--~~~--~~~~kT~v~~~t~nP~Wne~f~f~~~----~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 86 (126)
T cd08678 17 SSNPYCVLEM--DEP--PQKYQSSTQKNTSNPFWDEHFLFELS----PNSKELLFEVYDNGKKSDSKFLGLAIVPFDE 86 (126)
T ss_pred CcCCEEEEEE--CCC--CcEEEeEEEecCCCCccCceEEEEeC----CCCCEEEEEEEECCCCCCCceEEEEEEeHHH
Confidence 4566888876 221 12235555444456899999999974 3467899999998776667799999999854
No 132
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=93.37 E-value=0.69 Score=42.40 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=49.7
Q ss_pred CceEEEEEEEeCCcccccceeccccc-CCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLES-MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~-~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
++-||.+.+ ++.. ..|+... -+.++.|||.+.|++.-.+...+..|.|.|||.........||.+.++|=+
T Consensus 22 ~dpyv~v~~--~~~~----~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~ 93 (124)
T cd04049 22 IDPYVIIQC--RTQE----RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKG 93 (124)
T ss_pred cCceEEEEE--CCEe----eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHH
Confidence 456888765 3322 2333322 134688999999998776655678899999997654455789999999854
No 133
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=93.37 E-value=0.6 Score=42.30 Aligned_cols=67 Identities=21% Similarity=0.318 Sum_probs=46.3
Q ss_pred CceEEEEEEEeCCcccccceeccccc-CCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLES-MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~-~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
++-||.+.+ +++ ..+|+.+. -+.++.|||-+.|++.. +.+..|.|+|||....+ ...+|.+.+++=+
T Consensus 22 ~dpyv~v~~--~~~----~~kT~~~~~~~~nP~Wne~f~f~v~~---~~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~ 89 (118)
T cd08681 22 QDPYCVLRI--GGV----TKKTKTDFRGGQHPEWDEELRFEITE---DKKPILKVAVFDDDKRK-PDLIGDTEVDLSP 89 (118)
T ss_pred CCceEEEEE--CCC----ccccccccCCCCCCccCceEEEEecC---CCCCEEEEEEEeCCCCC-CcceEEEEEecHH
Confidence 566888875 331 12343322 12368899999999865 35678999999976543 5689999999865
No 134
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=93.10 E-value=0.32 Score=46.69 Aligned_cols=67 Identities=27% Similarity=0.349 Sum_probs=48.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (676)
.++-||.+.+ |++ ..+|+.+.-+.++.|||.++|++. + | ...|.|+|||.........+|.+.+++=
T Consensus 21 ~sDPYV~v~~--g~~----~~kT~vvk~t~nP~WnE~f~f~i~--~-~-~~~l~~~V~D~d~~~~dd~iG~a~i~l~ 87 (145)
T cd04038 21 SSDPYVVLTL--GNQ----KVKTRVIKKNLNPVWNEELTLSVP--N-P-MAPLKLEVFDKDTFSKDDSMGEAEIDLE 87 (145)
T ss_pred CcCcEEEEEE--CCE----EEEeeeEcCCCCCeecccEEEEec--C-C-CCEEEEEEEECCCCCCCCEEEEEEEEHH
Confidence 3566888776 443 345665554556899999999974 2 2 7789999999876555678999998773
No 135
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=93.03 E-value=0.36 Score=43.67 Aligned_cols=68 Identities=22% Similarity=0.294 Sum_probs=47.3
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
++-||.+.+ +++. ..+|+.+.-..++.|||.+.|++. + +.+..|.|.||+-..- +...+|.+.++|=+
T Consensus 13 ~dPYv~v~v--~~~~---~~kT~v~~~t~nP~Wne~f~f~v~--~-~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~ 80 (111)
T cd04052 13 LSPYAELYL--NGKL---VYTTRVKKKTNNPSWNASTEFLVT--D-RRKSRVTVVVKDDRDR-HDPVLGSVSISLND 80 (111)
T ss_pred CCceEEEEE--CCEE---EEEEeeeccCCCCccCCceEEEec--C-cCCCEEEEEEEECCCC-CCCeEEEEEecHHH
Confidence 466888877 4432 223444333456889999999874 2 2567799999997654 55789999999743
No 136
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=92.84 E-value=0.32 Score=46.83 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=51.7
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccc--------cCcC----ccCceEEEEEeecCCCCcee
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKY--------RDLT----AHSQLALTVWDVSCGKDERL 119 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~--------~dLP----~~a~L~~ti~~~~~~~~~~~ 119 (676)
.++-||.+.+..+.+.. ...+|+.+.-+.++.|||.+.|++.. -++| ....|.|+||+.........
T Consensus 18 ~sDPYV~V~l~~~~~k~-~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddf 96 (148)
T cd04010 18 TCDPYASVTLIYSNKKQ-DTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVF 96 (148)
T ss_pred CCCceEEEEEeCCcccC-cccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCce
Confidence 35669998887543321 12245444444568899999999852 1233 24679999999876555679
Q ss_pred EeEEEEEeec
Q 005800 120 VGGTTILLFN 129 (676)
Q Consensus 120 vG~~~~~LFd 129 (676)
+|.+.++|=+
T Consensus 97 LG~v~i~l~~ 106 (148)
T cd04010 97 LGEVRIPLRG 106 (148)
T ss_pred eEEEEEeccc
Confidence 9999998754
No 137
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=92.84 E-value=0.28 Score=49.28 Aligned_cols=67 Identities=21% Similarity=0.335 Sum_probs=54.8
Q ss_pred CCCcccccceEecccccCcCccCceEEEEEeecCCC--CceeEeEEEEEeeccc-ccccccceeeEeecCC
Q 005800 80 GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK--DERLVGGTTILLFNSK-MQLKTGKQKLRLWPGK 147 (676)
Q Consensus 80 ~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~--~~~~vG~~~~~LFd~~-~~Lr~G~~~l~lw~~~ 147 (676)
.+.+.|||.|.+.|...+.+ .+-|.|+++-++... .+.|+|-+=++|++.+ -+|+.|.+.|.+|...
T Consensus 63 ~~~P~W~EtiKi~lP~~~~~-~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~~~gt~l~Dg~H~L~vyk~d 132 (189)
T cd08695 63 NNSPRWNETIKLPIPIDKFR-GSHLRFEFRHCSTKDKGEKKLFGFSFVPLMREDGTTLPDGSHELYVYKCD 132 (189)
T ss_pred CCCCCCceeEEEecChhhCC-CeeEEEEEEEeeeccCCCCCceEEEEEeecccCCcEEcCCcEEEEEEecc
Confidence 35688999999999887765 579999999876532 3479999999999985 6789999999999643
No 138
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=92.70 E-value=0.91 Score=41.89 Aligned_cols=67 Identities=22% Similarity=0.309 Sum_probs=46.9
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
++-||.+.+ +++ ..+|..+.-+.++.|||.+.|++. + +.+..|.|+|||.... +...+|.++++|=+
T Consensus 17 ~Dpyv~v~l--~~~----~~kT~v~~~t~nP~Wne~F~f~~~--~-~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~ 83 (121)
T cd08378 17 NDPVVEVKL--GNY----KGSTKAIERTSNPEWNQVFAFSKD--R-LQGSTLEVSVWDKDKA-KDDFLGGVCFDLSE 83 (121)
T ss_pred CCCEEEEEE--CCc----cccccccCCCCCCccceEEEEEcC--C-CcCCEEEEEEEeCCCC-cCceeeeEEEEhHh
Confidence 566888886 332 335544433456889999999853 2 3678899999997643 45689999888755
No 139
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=92.62 E-value=0.41 Score=42.91 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=49.5
Q ss_pred CCceEEEEEEEeCC-cccccceecccccCCCCcccccceEecccccCcCc---cCceEEEEEeecCCCCceeEeEEEEEe
Q 005800 52 RPELYVECALYIDG-APFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTA---HSQLALTVWDVSCGKDERLVGGTTILL 127 (676)
Q Consensus 52 ~~~l~V~~~l~~~~-~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~---~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (676)
.+|-||.+.+..++ +.. ..-+|....-...+.|| +|.+.+.+|.. ...|.|.|||....++...+|.+++++
T Consensus 20 ~~DPyv~v~~~~~~~~~~-~~~kT~vi~~t~nP~Wn---~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l 95 (110)
T cd04047 20 KSDPFLEISRQSEDGTWV-LVYRTEVIKNTLNPVWK---PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTL 95 (110)
T ss_pred CCCeeEEEEEECCCCCEE-EEEeeeEeccCCCCceE---EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEH
Confidence 35668888765332 222 22355555445568899 45555555543 679999999987766667999999988
Q ss_pred ec
Q 005800 128 FN 129 (676)
Q Consensus 128 Fd 129 (676)
=+
T Consensus 96 ~~ 97 (110)
T cd04047 96 DE 97 (110)
T ss_pred HH
Confidence 54
No 140
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=92.42 E-value=0.52 Score=42.62 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=48.8
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecc
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (676)
.++-||.+.+ ++ ...+|..+.-+..+.|||...|++.- +.+..|.|+|||.... +...+|.+.++|-+-
T Consensus 27 ~~dPyv~v~~--~~----~~~kT~~~~~t~~P~W~e~f~~~v~~---~~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l 95 (121)
T cd08391 27 KSDPYVIVRV--GA----QTFKSKVIKENLNPKWNEVYEAVVDE---VPGQELEIELFDEDPD-KDDFLGRLSIDLGSV 95 (121)
T ss_pred CcCCEEEEEE--CC----EeEEccccCCCCCCcccceEEEEeCC---CCCCEEEEEEEecCCC-CCCcEEEEEEEHHHh
Confidence 3566888876 33 23355554445568899998888632 3578999999997655 556899999998653
No 141
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=92.39 E-value=0.45 Score=45.00 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=52.4
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEeccccc------------CcCccCceEEEEEeecCCCCcee
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYR------------DLTAHSQLALTVWDVSCGKDERL 119 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~------------dLP~~a~L~~ti~~~~~~~~~~~ 119 (676)
.++-||++.+-...+. ..-+|+.+.-+..+.|||.+.|++.-. +-.....|.|+||+.....+...
T Consensus 18 ~~dPyv~v~~~~~~~~--~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~ 95 (137)
T cd08675 18 TCDPFARVTLNYSSKT--DTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDF 95 (137)
T ss_pred CCCcEEEEEEecCCcC--CeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcE
Confidence 3567888877532111 123455555455788999999997654 34467789999999876556678
Q ss_pred EeEEEEEeec
Q 005800 120 VGGTTILLFN 129 (676)
Q Consensus 120 vG~~~~~LFd 129 (676)
||.+.++|=+
T Consensus 96 IG~~~i~l~~ 105 (137)
T cd08675 96 LGEVRIPLQG 105 (137)
T ss_pred EEEEEEehhh
Confidence 9999998543
No 142
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=92.39 E-value=1.1 Score=40.40 Aligned_cols=67 Identities=25% Similarity=0.350 Sum_probs=47.0
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
++-||.+.+ ++.. .+|..+.-+.++.|||.+.|++. ++ ...|.|.|||.....+...+|.+.+++-+
T Consensus 22 ~dPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~~~~~--~~--~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (119)
T cd08377 22 SDPFCVLEL--VNAR----LQTHTIYKTLNPEWNKIFTFPIK--DI--HDVLEVTVYDEDKDKKPEFLGKVAIPLLS 88 (119)
T ss_pred CCcEEEEEE--CCEe----eecceecCCcCCccCcEEEEEec--Cc--CCEEEEEEEECCCCCCCceeeEEEEEHHH
Confidence 566888766 3322 34544443456889999999864 32 46899999997654456789999999865
No 143
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=92.13 E-value=0.54 Score=43.72 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=52.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccC-CCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecc
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESM-GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~-~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (676)
.+|-||.+.+ |+.. .+|+...- ..++.|||.+.|++.- -...|.|+|||-..-++..++|.+.++|=+
T Consensus 21 ~sDPYv~i~l--g~~~----~kT~v~~~~~~nP~WNe~F~f~v~~----~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~- 89 (121)
T cd04016 21 RMDPYCRIRV--GHAV----YETPTAYNGAKNPRWNKTIQCTLPE----GVDSIYIEIFDERAFTMDERIAWTHITIPE- 89 (121)
T ss_pred CCCceEEEEE--CCEE----EEeEEccCCCCCCccCeEEEEEecC----CCcEEEEEEEeCCCCcCCceEEEEEEECch-
Confidence 4677999888 4432 24544322 3468899999999742 235799999997665556789999998853
Q ss_pred cccccccceeeEeec
Q 005800 131 KMQLKTGKQKLRLWP 145 (676)
Q Consensus 131 ~~~Lr~G~~~l~lw~ 145 (676)
.+..|.. ...|-
T Consensus 90 --~~~~g~~-~~~W~ 101 (121)
T cd04016 90 --SVFNGET-LDDWY 101 (121)
T ss_pred --hccCCCC-ccccE
Confidence 2334432 35553
No 144
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=91.96 E-value=0.57 Score=44.45 Aligned_cols=77 Identities=17% Similarity=0.149 Sum_probs=52.7
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCc--------------------CccCceEEEEEe
Q 005800 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDL--------------------TAHSQLALTVWD 110 (676)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dL--------------------P~~a~L~~ti~~ 110 (676)
..+|+||.+.|-.. +.-..-+.+-|.+......||+-+.||+.|... =..+.|.++|||
T Consensus 23 ~~sD~yVK~~L~~~-~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD 101 (133)
T cd08374 23 KMSDIYVKGWLDGL-EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWD 101 (133)
T ss_pred cccCeEEEEEEccC-cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEE
Confidence 35899999988754 222233445666665568899999999887321 235788899998
Q ss_pred ecCCCCceeEeEEEEEee
Q 005800 111 VSCGKDERLVGGTTILLF 128 (676)
Q Consensus 111 ~~~~~~~~~vG~~~~~LF 128 (676)
...-.....+|.+.++|=
T Consensus 102 ~D~~s~dd~iG~~~l~l~ 119 (133)
T cd08374 102 NDKFSPDDFLGSLELDLS 119 (133)
T ss_pred CcccCCCCcceEEEEEhh
Confidence 765444457787777764
No 145
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=91.96 E-value=1.1 Score=43.50 Aligned_cols=50 Identities=26% Similarity=0.508 Sum_probs=38.2
Q ss_pred ecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 73 RTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 73 ~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
+|..+.-+.++.|||.+.|++. ++ .+..|.|+|||.. ...+|.+.+++=+
T Consensus 92 kT~v~~~tlnP~WnE~F~f~v~--~~-~~~~L~i~V~D~d----d~~IG~v~i~l~~ 141 (153)
T cd08676 92 VTEVKPQTLNPVWNETFRFEVE--DV-SNDQLHLDIWDHD----DDFLGCVNIPLKD 141 (153)
T ss_pred ecceecCCCCCccccEEEEEec--cC-CCCEEEEEEEecC----CCeEEEEEEEHHH
Confidence 4555554557899999999973 33 4678999999975 4589999999854
No 146
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=91.90 E-value=1.1 Score=41.63 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=44.4
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeec-------CCCCceeEeEEEE
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVS-------CGKDERLVGGTTI 125 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~-------~~~~~~~vG~~~~ 125 (676)
++-||+..+-.+++.- ....|.-+.-+.++.|||..+|+|. ..-.|.|+|||.. ..+....+|.+.+
T Consensus 15 sDPYV~l~v~~~~~~~-~~~KTk~i~~TlnPvWnE~F~i~l~-----~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i 88 (118)
T cd08686 15 ANLYCTLEVDSFGYFV-KKAKTRVCRDTTEPNWNEEFEIELE-----GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQI 88 (118)
T ss_pred CCCEEEEEEcCccccc-eeeeeeeecCCCCCccceEEEEEeC-----CCCEEEEEEEEcccccccccccCcccEEEEEEE
Confidence 5668888765444321 2334544443456899999999875 2448999999973 1134457877777
Q ss_pred Ee
Q 005800 126 LL 127 (676)
Q Consensus 126 ~L 127 (676)
.|
T Consensus 89 ~L 90 (118)
T cd08686 89 QL 90 (118)
T ss_pred EE
Confidence 66
No 147
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.66 E-value=0.67 Score=52.18 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=57.7
Q ss_pred cCCCCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEE
Q 005800 49 EERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTI 125 (676)
Q Consensus 49 ~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~ 125 (676)
....+|-||.+.+.++++.+..- .|+.+.-..++.|||.+.|.|.-.+|-. +.|.|+|||...-+....||++.+
T Consensus 315 ~~~~~d~~Vk~~l~~~~~~~~kk-kT~~~~~~~npv~nesf~F~vp~~~l~~-~~l~l~V~d~d~~~~~~~iG~~~l 389 (421)
T KOG1028|consen 315 VGGLSDPYVKVTLLDGDKRLSKK-KTSVKKKTLNPVFNETFVFDVPPEQLAE-VSLELTVWDHDTLGSNDLIGRCIL 389 (421)
T ss_pred CCCCCCccEEEEEecCCceeeee-eeecccCCCCCcccccEEEeCCHHHhhe-eEEEEEEEEcccccccceeeEEEe
Confidence 33446789999999999777443 5655555566789999999999889987 899999999877555557885544
No 148
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=91.60 E-value=0.65 Score=45.07 Aligned_cols=67 Identities=25% Similarity=0.328 Sum_probs=46.9
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 005800 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (676)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (676)
..++-||++++ ++... .+|..+.-+.++.|||...|++. ...+.|.|+|||-..- +...||.+++++
T Consensus 56 g~sDPYv~V~l--~~~~~---~rT~v~~~~~nP~WnE~F~~~~~----~~~~~l~~~V~d~d~~-~~~~IG~~~i~l 122 (158)
T cd04015 56 ITSDPYATVDL--AGARV---ARTRVIENSENPVWNESFHIYCA----HYASHVEFTVKDNDVV-GAQLIGRAYIPV 122 (158)
T ss_pred CCcCeEEEEEE--CCeEe---eEEEEeCCCCCCccceEEEEEcc----CCCCEEEEEEEeCCCc-CCcEEEEEEEEh
Confidence 44688999987 44433 24544443456899999999864 2346899999996543 236899999998
No 149
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=91.59 E-value=1.6 Score=40.02 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=46.4
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (676)
+|-||.+.+ +++.+ -+|+...-+.++.|||-..|++.- -...|.|.||+...-+....+|.+.+++-
T Consensus 21 ~DPYv~v~~--~~~~~---~kT~v~~~t~nP~Wne~f~~~~~~----~~~~l~v~v~d~~~~~~d~~iG~~~~~~~ 87 (121)
T cd04054 21 SDPYCIVKV--DNEVI---IRTATVWKTLNPFWGEEYTVHLPP----GFHTVSFYVLDEDTLSRDDVIGKVSLTRE 87 (121)
T ss_pred CCceEEEEE--CCEee---eeeeeEcCCCCCcccceEEEeeCC----CCCEEEEEEEECCCCCCCCEEEEEEEcHH
Confidence 466887765 45443 245444445568899999998642 23689999999765445578999999864
No 150
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=91.10 E-value=1.5 Score=48.40 Aligned_cols=111 Identities=20% Similarity=0.246 Sum_probs=76.4
Q ss_pred EEEEEecCcceeeccCCcceEEEEEecCCCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCC
Q 005800 532 LITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDE 611 (676)
Q Consensus 532 ~i~~i~~~~~~v~~S~~~Pl~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~ 611 (676)
.|.+|.....-.=+..+.-.+++|.+ | .++++|. -+++-|+....++..++.-... -++.+...+|+.-|.+.
T Consensus 44 ~i~~I~~~~GD~H~~Gr~V~~l~f~~--g--~kivYKP-Rsl~~d~~f~~l~~~ln~~~~~--~~~~l~~~~~l~~g~~Y 116 (370)
T PF13575_consen 44 KITSIEFGLGDTHNGGRSVAILEFSS--G--KKIVYKP-RSLSIDKAFNDLLEWLNEKNGT--PSLDLPTPKVLDRGDGY 116 (370)
T ss_pred CceEecCCCCCcCCCCceEEEEEECC--C--CEEEEeC-cccHHHHHHHHHHHHHhhhccc--cccccccceeeeccCcc
Confidence 45666543222223336777778863 3 4799999 6899999988888877765321 23567778999998889
Q ss_pred ceeeeeccccHHHHHhccccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCC
Q 005800 612 GLLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD 675 (676)
Q Consensus 612 GlIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGD 675 (676)
|..|||+..+..+ .+..++|-+-+.+...+.|+||..|
T Consensus 117 gW~EfI~~~~c~~--------------------------~~ev~~yY~r~G~llal~y~L~~~D 154 (370)
T PF13575_consen 117 GWQEFIEHEPCNS--------------------------EEEVERYYYRLGVLLALLYLLNGTD 154 (370)
T ss_pred eeEEEecCCCCCC--------------------------HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999998443221 2345677777777888888888776
No 151
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=90.92 E-value=0.9 Score=43.19 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=50.2
Q ss_pred CCceEEEEEEEeCCccc---c----cceecccccCCCCccc-ccceEecccccCcCccCceEEEEEeecCCCC---ceeE
Q 005800 52 RPELYVECALYIDGAPF---G----LPMRTRLESMGPMYCW-NEPITLSTKYRDLTAHSQLALTVWDVSCGKD---ERLV 120 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l---~----~p~~T~~~~~~~~~~W-newl~fpi~~~dLP~~a~L~~ti~~~~~~~~---~~~v 120 (676)
.+|=||.+.+.-+++.+ + ..-+|..+.-.-++.| ||.+.|.+.. +..|.|+|||....+. ...+
T Consensus 20 ~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-----~~~L~v~V~D~~~~~~~~~~d~l 94 (137)
T cd08691 20 NPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-----TDVLEIEVKDKFAKSRPIIRRFL 94 (137)
T ss_pred CCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-----CCEEEEEEEecCCCCCccCCceE
Confidence 35668998887655442 1 2345655554456899 9999999853 4479999999654322 3689
Q ss_pred eEEEEEeec
Q 005800 121 GGTTILLFN 129 (676)
Q Consensus 121 G~~~~~LFd 129 (676)
|.+.++|=+
T Consensus 95 G~~~i~l~~ 103 (137)
T cd08691 95 GKLSIPVQR 103 (137)
T ss_pred EEEEEEHHH
Confidence 999998754
No 152
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=89.88 E-value=2.5 Score=39.01 Aligned_cols=66 Identities=15% Similarity=0.249 Sum_probs=46.0
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
++-||.+. .+++ ..+|+.+.-+.++.|||-..|.+. + .+..|.|+|||.... ....+|.+++++-.
T Consensus 24 ~dPyv~v~--~~~~----~~kT~v~~~t~nP~Wne~f~f~~~--~--~~~~l~i~V~d~~~~-~d~~lG~~~~~l~~ 89 (126)
T cd04046 24 ADPYVIIK--CEGE----SVRSPVQKDTLSPEFDTQAIFYRK--K--PRSPIKIQVWNSNLL-CDEFLGQATLSADP 89 (126)
T ss_pred cCccEEEE--ECCE----EEEeCccCCCCCCcccceEEEEec--C--CCCEEEEEEEECCCC-CCCceEEEEEeccc
Confidence 45577664 3444 346665554557899999988753 3 367899999996543 34689999999843
No 153
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=89.57 E-value=1.7 Score=40.71 Aligned_cols=69 Identities=6% Similarity=0.218 Sum_probs=45.8
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecc-ccc----CcCc-cCceEEEEEeecCCCCceeEeEEEE
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLST-KYR----DLTA-HSQLALTVWDVSCGKDERLVGGTTI 125 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi-~~~----dLP~-~a~L~~ti~~~~~~~~~~~vG~~~~ 125 (676)
.++-||.+.+. +. ..+|..+.-+.++.|||.+.|++ .+. ++.. ...|.|+|||....++...+|.+.+
T Consensus 21 ~~dpyv~v~~~--~~----~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i 94 (135)
T cd04017 21 LSDPFARVSFL--NQ----SQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVA 94 (135)
T ss_pred CCCCEEEEEEC--Ce----eeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEe
Confidence 35668888763 32 33555544445688999999984 332 2322 3569999999876555679999986
Q ss_pred E
Q 005800 126 L 126 (676)
Q Consensus 126 ~ 126 (676)
.
T Consensus 95 ~ 95 (135)
T cd04017 95 K 95 (135)
T ss_pred e
Confidence 3
No 154
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=88.83 E-value=2.4 Score=38.05 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=43.7
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.++-||.+.+ +++.. -+|+-+.- ..+.|||...|++.-.++ ....|.|.+|+.....+...+|.+.+....
T Consensus 17 ~~dpyv~v~~--~~~~~---~kT~~~~~-~~P~Wne~f~f~v~~~~~-~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~ 87 (117)
T cd08383 17 TRDPYCTVSL--DQVEV---ARTKTVEK-LNPFWGEEFVFDDPPPDV-TFFTLSFYNKDKRSKDRDIVIGKVALSKLD 87 (117)
T ss_pred CCCceEEEEE--CCEEe---EecceEEC-CCCcccceEEEecCCccc-cEEEEEEEEEecccCCCeeEEEEEEecCcC
Confidence 3566887776 44332 23443333 568899999999865444 235677888886543344567777665544
No 155
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=88.66 E-value=1.9 Score=41.58 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=57.5
Q ss_pred CceEEEEEEEe-CCcccccceecccccC--CCCcccccceEecccccCcCccCceEEEEEeecCCCCce-eEeEEEEEee
Q 005800 53 PELYVECALYI-DGAPFGLPMRTRLESM--GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDER-LVGGTTILLF 128 (676)
Q Consensus 53 ~~l~V~~~l~~-~~~~l~~p~~T~~~~~--~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~-~vG~~~~~LF 128 (676)
.+=++++.|.+ +|++++.+-.|+...- .+...||..+.+...+.+||.+|.+.|.+-.+...++.+ .-+|+=+.+
T Consensus 31 ~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~kH~K~kk~k~S~kcw~fme~- 109 (147)
T PF14186_consen 31 IDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEFKHYKPKKKKTSTKCWAFMEL- 109 (147)
T ss_dssp EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEEEEEETTTTCEEEEEEEEEEG-
T ss_pred cCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEEEeeeccceeeeeeEEEEEEh-
Confidence 45588999985 7888988877766432 234668999999999999999999999999887655554 457776666
Q ss_pred cccccccccceeeEeec
Q 005800 129 NSKMQLKTGKQKLRLWP 145 (676)
Q Consensus 129 d~~~~Lr~G~~~l~lw~ 145 (676)
..++.|...+.+|.
T Consensus 110 ---dei~~g~~~lely~ 123 (147)
T PF14186_consen 110 ---DEIKPGPVVLELYK 123 (147)
T ss_dssp ---GG--SEEEEE--EE
T ss_pred ---hhccCCceeeehhc
Confidence 78899999999984
No 156
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=88.53 E-value=3.5 Score=38.15 Aligned_cols=67 Identities=19% Similarity=0.363 Sum_probs=44.0
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCC-----------CCceeEe
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG-----------KDERLVG 121 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~-----------~~~~~vG 121 (676)
++-||.+.+ +++ ..+|..+.-...+.|||...|++.- | ...|.|.|||.... .....+|
T Consensus 22 ~DPyv~v~~--~~~----~~kT~~v~~t~~P~Wne~f~f~~~~---~-~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG 91 (127)
T cd04027 22 SDPYVTVQV--GKT----KKRTKTIPQNLNPVWNEKFHFECHN---S-SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLG 91 (127)
T ss_pred cCcEEEEEE--CCE----eeecceecCCCCCccceEEEEEecC---C-CCEEEEEEEECCCCcccccceeccccCCCcce
Confidence 455777765 332 2345544434568899999998642 2 45799999997532 2345899
Q ss_pred EEEEEeec
Q 005800 122 GTTILLFN 129 (676)
Q Consensus 122 ~~~~~LFd 129 (676)
.+.+++=+
T Consensus 92 ~~~i~l~~ 99 (127)
T cd04027 92 QTIIEVRT 99 (127)
T ss_pred EEEEEhHH
Confidence 99998743
No 157
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=87.93 E-value=1.9 Score=39.76 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=46.8
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
.+|-||.+.+ +++.. -+|.-+.-+.++.|||-.+|++.-. ...|.|+||+...-.+...+|.+.++|=+
T Consensus 21 ~sDpYv~v~l--~~~~~---~kT~v~~kt~~P~WnE~F~f~v~~~----~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 89 (121)
T cd08401 21 MRDCYCTVNL--DQEEV---FRTKTVEKSLCPFFGEDFYFEIPRT----FRHLSFYIYDRDVLRRDSVIGKVAIKKED 89 (121)
T ss_pred CcCcEEEEEE--CCccE---EEeeEEECCCCCccCCeEEEEcCCC----CCEEEEEEEECCCCCCCceEEEEEEEHHH
Confidence 3466888877 44432 2233222244678999999997621 35899999998765556789999998743
No 158
>PLN03008 Phospholipase D delta
Probab=82.98 E-value=3 Score=50.35 Aligned_cols=67 Identities=21% Similarity=0.291 Sum_probs=46.2
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEe
Q 005800 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (676)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (676)
..+|.||++.| ++..+. +|..+.-..++.|||.++|++.- ..+.|.|+|||...-+ ..+||-+.++|
T Consensus 75 ~tSDPYV~I~L--g~~rv~---RTrVi~n~~NPvWNE~F~f~vah----~~s~L~f~VkD~D~~g-aD~IG~a~IPL 141 (868)
T PLN03008 75 ITSDPYVTVVV--PQATLA---RTRVLKNSQEPLWDEKFNISIAH----PFAYLEFQVKDDDVFG-AQIIGTAKIPV 141 (868)
T ss_pred CCCCceEEEEE--CCccee---eEEeCCCCCCCCcceeEEEEecC----CCceEEEEEEcCCccC-CceeEEEEEEH
Confidence 45789999999 443332 56544434468899999999664 3578999999965433 35677776654
No 159
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=81.79 E-value=4.1 Score=39.29 Aligned_cols=68 Identities=24% Similarity=0.381 Sum_probs=48.3
Q ss_pred ceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCC----CceeEeEEEEEeec
Q 005800 54 ELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK----DERLVGGTTILLFN 129 (676)
Q Consensus 54 ~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~----~~~~vG~~~~~LFd 129 (676)
+.|++++| ||...+ +|+-+.-...+.|+|-..|+ ++|.-+.|+|+||...... +...||-+.|++-+
T Consensus 28 ~~Y~~i~L--d~~~va---RT~v~~~~~nP~W~E~F~f~----~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~ 98 (146)
T cd04013 28 RYYCELCL--DKTLYA---RTTSKLKTDTLFWGEHFEFS----NLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTD 98 (146)
T ss_pred CceEEEEE--CCEEEE---EEEEEcCCCCCcceeeEEec----CCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHH
Confidence 45666544 454332 45555545568899999996 8888888999999765432 45799999999876
Q ss_pred c
Q 005800 130 S 130 (676)
Q Consensus 130 ~ 130 (676)
-
T Consensus 99 l 99 (146)
T cd04013 99 V 99 (146)
T ss_pred h
Confidence 3
No 160
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=80.68 E-value=3.6 Score=40.49 Aligned_cols=66 Identities=27% Similarity=0.371 Sum_probs=44.8
Q ss_pred ceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 54 ELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 54 ~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
|=||...+ |++.+ +|.-+.-.-++.|||-++|+|+=.. .-|.++|||...-...-.+|-++|+|=-
T Consensus 28 DPyVVl~l--g~q~l----kT~~v~~n~NPeWNe~ltf~v~d~~----~~lkv~VyD~D~fs~dD~mG~A~I~l~p 93 (168)
T KOG1030|consen 28 DPYVVLEL--GNQKL----KTRVVYKNLNPEWNEELTFTVKDPN----TPLKVTVYDKDTFSSDDFMGEATIPLKP 93 (168)
T ss_pred CCeEEEEE--CCeee----eeeeecCCCCCcccceEEEEecCCC----ceEEEEEEeCCCCCcccccceeeeccHH
Confidence 33655543 45444 4443333346889999999987544 4578999998776666689999998743
No 161
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.32 E-value=10 Score=42.86 Aligned_cols=110 Identities=20% Similarity=0.286 Sum_probs=72.7
Q ss_pred ceEEEeeCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCcc
Q 005800 5 EFRFFLSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYC 84 (676)
Q Consensus 5 ~~~~~~s~dl~~~~~~ki~~leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~ 84 (676)
.+.|.+.+|... ..+.|.-+++. +.|... ....++=||.+.+.-+- -.-.+|.-+.-..++.
T Consensus 155 ~l~fsl~Yd~~~-~~L~V~V~qa~----~Lp~~d----------~~g~sdpyVK~~llPdk---~~k~kT~v~r~tlnP~ 216 (421)
T KOG1028|consen 155 NLQFSLQYDFEL-NLLTVRVIQAH----DLPAKD----------RGGTSDPYVKVYLLPDK---KGKFKTRVHRKTLNPV 216 (421)
T ss_pred eEEEEEEecccC-CEEEEEEEEec----CCCccc----------CCCCCCCeeEEEEcCCC---CCcceeeeeecCcCCc
Confidence 356777777653 34444445553 122211 11235668988887443 1234565555556688
Q ss_pred cccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeeccccc
Q 005800 85 WNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQ 133 (676)
Q Consensus 85 Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~~ 133 (676)
|||...|.|.+.+|.. ..|.|+||+...=....++|-+.++|.+-+-.
T Consensus 217 fnEtf~f~v~~~~l~~-~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~ 264 (421)
T KOG1028|consen 217 FNETFRFEVPYEELSN-RVLHLSVYDFDRFSRHDFIGEVILPLGEVDLL 264 (421)
T ss_pred cccceEeecCHHHhcc-CEEEEEEEecCCcccccEEEEEEecCcccccc
Confidence 9999999999999975 58999999987655667999999997765433
No 162
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=79.73 E-value=7.4 Score=36.74 Aligned_cols=62 Identities=19% Similarity=0.300 Sum_probs=43.2
Q ss_pred EEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 56 YVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 56 ~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
||.+++ |++ ...|..... +++.|||-..|.+. + +.+ .|.|.|||-.. .....+|.+.++|=+
T Consensus 23 YV~Ik~--g~~----k~kT~v~~~-~nP~WnE~F~F~~~--~-~~~-~L~v~V~dkd~-~~DD~lG~v~i~L~~ 84 (127)
T cd08394 23 YVTLKV--QNV----KSTTIAVRG-SQPCWEQDFMFEIN--R-LDL-GLVIELWNKGL-IWDTLVGTVWIPLST 84 (127)
T ss_pred eEEEEE--CCE----EeEeeECCC-CCCceeeEEEEEEc--C-CCC-EEEEEEEeCCC-cCCCceEEEEEEhHH
Confidence 888777 553 234555443 47899999999973 3 333 39999999543 244589999999864
No 163
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=74.39 E-value=5.5 Score=35.48 Aligned_cols=73 Identities=15% Similarity=0.271 Sum_probs=52.4
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeec
Q 005800 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (676)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (676)
+++.+||..-+- =.||+ +..|+.+-..+.+.+.|...|.|+.-+|+. ..|.|.||.. - ++...+||.+++|=+
T Consensus 19 e~~~i~ikg~~t-l~kpv--~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~-V~L~fsv~~~-~-~RKe~iG~~sL~l~s 91 (103)
T cd08684 19 ENPTIYIKGILT-LPKPV--HFKSSAKEGSNDIEFMETFVFAIKLQNLQT-VRLVFKIQTQ-T-PRKRTIGECSLSLRT 91 (103)
T ss_pred cCCeeEEEEEEe-cCCCc--cccchhhcCCCChhHHHHHHHHHHHhhccc-eEEEEEeecc-C-CccceeeEEEeeccc
Confidence 457788876443 12222 335677677778899999999999999985 6789999982 2 234579999988743
No 164
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=67.35 E-value=18 Score=45.22 Aligned_cols=87 Identities=24% Similarity=0.418 Sum_probs=59.7
Q ss_pred eEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccC
Q 005800 18 VKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRD 97 (676)
Q Consensus 18 ~~~ki~~leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~d 97 (676)
|.|+|.+.+|.+.. .+-.....|=||+.+ +|+-- .+ .|+-+.-..++.|||.+-.+|.
T Consensus 438 v~vkI~sa~~lk~~--------------d~~i~~~vDpyit~~-~~~r~-~g---kT~v~~nt~nPvwNEt~Yi~ln--- 495 (1227)
T COG5038 438 VEVKIKSAEGLKKS--------------DSTINGTVDPYITVT-FSDRV-IG---KTRVKKNTLNPVWNETFYILLN--- 495 (1227)
T ss_pred EEEEEeeccCcccc--------------cccccCCCCceEEEE-ecccc-CC---ccceeeccCCccccceEEEEec---
Confidence 57899999996542 222233456688888 44321 11 3444433345789999999988
Q ss_pred cCccCceEEEEEeecCCCCceeEeEEEEEe
Q 005800 98 LTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (676)
Q Consensus 98 LP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (676)
..+..|.+.+||....+....+|.+-+.|
T Consensus 496 -s~~d~L~LslyD~n~~~sd~vvG~~~l~L 524 (1227)
T COG5038 496 -SFTDPLNLSLYDFNSFKSDKVVGSTQLDL 524 (1227)
T ss_pred -ccCCceeEEEEeccccCCcceeeeEEech
Confidence 78889999999977666667889887765
No 165
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=60.62 E-value=24 Score=32.41 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=35.6
Q ss_pred CCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeeccccccc
Q 005800 81 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLK 135 (676)
Q Consensus 81 ~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~~Lr 135 (676)
.+..|||...|++ | ..-.+-|+|||..+ ...+|||-.=++|.|-=..+|
T Consensus 43 rnd~WnE~F~i~V---d--k~nEiel~VyDk~~-~~~~Pi~llW~~~sdi~Ee~R 91 (109)
T cd08689 43 RNDRWNEDFEIPV---E--KNNEEEVIVYDKGG-DQPVPVGLLWLRLSDIAEEIR 91 (109)
T ss_pred CCCcccceEEEEe---c--CCcEEEEEEEeCCC-CeecceeeehhhHHHHHHHHH
Confidence 4567999977777 3 47889999999744 456799987777777433333
No 166
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.37 E-value=20 Score=40.36 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=50.9
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEee
Q 005800 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (676)
.+|=||.++|.-+.+-.+... |....-.-++.|||..+|.++-.| ++-||.+.|||-......-..|..++.+=
T Consensus 200 lSDPYvk~kliPD~~~~sKqK-TkTik~~LNP~wNEtftf~Lkp~D--kdrRlsiEvWDWDrTsRNDFMGslSFgis 273 (683)
T KOG0696|consen 200 LSDPYVKLKLIPDPKNESKQK-TKTIKATLNPVWNETFTFKLKPSD--KDRRLSIEVWDWDRTSRNDFMGSLSFGIS 273 (683)
T ss_pred CCCcceeEEeccCCcchhhhh-hhhhhhhcCccccceeEEeccccc--ccceeEEEEecccccccccccceecccHH
Confidence 367799999996655554431 222122234789999999988877 56689999999877655556777665553
No 167
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=59.01 E-value=65 Score=29.99 Aligned_cols=93 Identities=15% Similarity=0.168 Sum_probs=55.1
Q ss_pred CeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccC-CCCcccccceEecccc
Q 005800 17 PVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESM-GPMYCWNEPITLSTKY 95 (676)
Q Consensus 17 ~~~~ki~~leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~-~~~~~Wnewl~fpi~~ 95 (676)
.+.|.|..|+|... ....|.+..--|++..+ ...|...+. .+...|||.+.+++.+
T Consensus 8 ~~~l~i~~l~~~p~----------------------~~~~v~v~wkr~~~~~~-~~~t~~~~~~~~~v~w~e~~~~~~tl 64 (143)
T PF10358_consen 8 QFDLTIHELENLPS----------------------SNGKVFVKWKRGDKSKG-SGTTSRANVKNGKVQWNEEFSFPCTL 64 (143)
T ss_pred EEEEEEEEeECcCC----------------------CCCEEEEEEEECCCCcc-ceeeeeeeccccEEEEeeEEEEEEEE
Confidence 46788888888522 12233343333444332 223333333 3457899999999655
Q ss_pred cCc-----CccCceEEEEEeecCCCCceeEeEEEEEeecccc
Q 005800 96 RDL-----TAHSQLALTVWDVSCGKDERLVGGTTILLFNSKM 132 (676)
Q Consensus 96 ~dL-----P~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~ 132 (676)
--= -..-.+.|+|+...+.++...+|.+++.|=++=+
T Consensus 65 ~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~ 106 (143)
T PF10358_consen 65 YRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYAN 106 (143)
T ss_pred EEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhC
Confidence 321 3445788999988533233689999988877633
No 168
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=56.90 E-value=19 Score=48.06 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=54.2
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecc-c
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS-K 131 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~-~ 131 (676)
+|=||.+.+=. .++.+|+.+.-+.++.|||-++|.+ .+-|.+-.|.|.|||.+.-++. .+|-++++|=+- .
T Consensus 1999 sdPyv~l~~g~-----~~~~kTkvvk~~~nP~Wne~f~~~~--~~p~~~~~l~iev~d~d~f~kd-~~G~~~i~l~~vv~ 2070 (2102)
T PLN03200 1999 TNAFCKLTLGN-----GPPRQTKVVSHSSSPEWKEGFTWAF--DSPPKGQKLHISCKSKNTFGKS-SLGKVTIQIDRVVM 2070 (2102)
T ss_pred CCCeEEEEECC-----CCcccccccCCCCCCCcccceeeee--cCCCCCCceEEEEEecCccCCC-CCceEEEEHHHHhc
Confidence 45577765432 2244677666666789999999754 3557788899999997644333 899999998763 2
Q ss_pred ccccccceee
Q 005800 132 MQLKTGKQKL 141 (676)
Q Consensus 132 ~~Lr~G~~~l 141 (676)
+.=.+|.+.|
T Consensus 2071 ~~~~~~~~~L 2080 (2102)
T PLN03200 2071 EGTYSGEYSL 2080 (2102)
T ss_pred Cceeeeeeec
Confidence 3223455554
No 169
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=54.55 E-value=21 Score=24.13 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHh
Q 005800 372 VRAYAVCILERADDDELQCYLLQLVQALR 400 (676)
Q Consensus 372 VR~yAV~~L~~~~d~eL~~yLlQLVQaLk 400 (676)
||.+|+..|.++.|+ ..++-|+++|+
T Consensus 1 VR~~Aa~aLg~igd~---~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDP---RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SH---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH---HHHHHHHHHhc
Confidence 799999999999984 45666666664
No 170
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=50.60 E-value=1.1e+02 Score=29.85 Aligned_cols=89 Identities=19% Similarity=0.275 Sum_probs=59.4
Q ss_pred CCceEEEEEEEeCCc-------ccccceecccccC---CCCcccccceEecccccCcCccCceEEEEEeecCCCCceeEe
Q 005800 52 RPELYVECALYIDGA-------PFGLPMRTRLESM---GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVG 121 (676)
Q Consensus 52 ~~~l~V~~~l~~~~~-------~l~~p~~T~~~~~---~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG 121 (676)
.+.||++-++.+|.. .+.--.++.+..- .+...||--+++..+.....---+|.|+||..+.-+.....|
T Consensus 16 ~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~G 95 (168)
T PF07162_consen 16 EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEG 95 (168)
T ss_pred CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeE
Confidence 468899999987442 2111122333222 344679999999999988866569999999988766667776
Q ss_pred EEEEEeecccccccccceee--Eeec
Q 005800 122 GTTILLFNSKMQLKTGKQKL--RLWP 145 (676)
Q Consensus 122 ~~~~~LFd~~~~Lr~G~~~l--~lw~ 145 (676)
-..+.| -+..|.+.+ .+|.
T Consensus 96 YG~~~l-----P~~pG~h~~~v~~wr 116 (168)
T PF07162_consen 96 YGFCHL-----PTQPGRHEVEVPTWR 116 (168)
T ss_pred EeEEEe-----CCCCceEEEEEEEEe
Confidence 666666 335677655 4664
No 171
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=47.07 E-value=20 Score=30.02 Aligned_cols=32 Identities=31% Similarity=0.318 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhcc
Q 005800 368 ESEEVRAYAVCILERADDDELQCYLLQLVQALRFE 402 (676)
Q Consensus 368 ~d~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE 402 (676)
.|+.||..|+..|..+.+++ .+++|++++.-+
T Consensus 43 ~~~~vr~~a~~aL~~i~~~~---~~~~L~~~l~~~ 74 (88)
T PF13646_consen 43 EDPMVRRAAARALGRIGDPE---AIPALIKLLQDD 74 (88)
T ss_dssp SSHHHHHHHHHHHHCCHHHH---THHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCCHH---HHHHHHHHHcCC
Confidence 45677777777777776544 455556655554
No 172
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=35.37 E-value=2.1e+02 Score=35.04 Aligned_cols=91 Identities=27% Similarity=0.438 Sum_probs=59.6
Q ss_pred cceEEEEEecCCCeEEEEEEeCCchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCceeeeeccccHHHHHhc
Q 005800 549 HPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIPSRSLAQILSE 628 (676)
Q Consensus 549 ~Pl~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~l~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~s~tl~~I~~~ 628 (676)
.=.++.|. +| .++++|. -+|+-|+...+++..++.-. + ...+...+|+.-+ +.|..|||+..+..+
T Consensus 104 ~V~~l~f~--~g--~kivYKP-r~l~~d~~f~~~l~~ln~~~---~-~~~~~~~~~l~~~-~ygw~EfI~~~~c~~---- 169 (825)
T cd04792 104 VVAILTFS--SG--LKLVYKP-RSLSVDALFQELLEWLNSFL---G-ALPLRTPKVLDRG-DYGWEEFIEHQPCQS---- 169 (825)
T ss_pred eEEEEEEC--CC--CEEEECC-CCchHHHHHHHHHHHHHhcC---C-ccccccceeeecC-CcceEEeecCCCCCC----
Confidence 34455563 33 3689999 68999999999888777542 1 2334778888766 589999998422111
Q ss_pred cccHHHHHHhhCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhccCC
Q 005800 629 HRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD 675 (676)
Q Consensus 629 ~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGiGD 675 (676)
.+.+++|-+-+.++..+.|+||.-|
T Consensus 170 ----------------------~~e~~~fY~r~G~llal~y~L~~tD 194 (825)
T cd04792 170 ----------------------KEEVERYYYRLGGLLALLYLLNATD 194 (825)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 2335566666666666677776654
No 173
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=34.27 E-value=43 Score=30.58 Aligned_cols=75 Identities=23% Similarity=0.342 Sum_probs=49.1
Q ss_pred hHHHhhhchhhHhhhhccccCCCHHHHHHHHHHhccc--------CCCCHhhHhhccCCCCC-------C---HHHHHHH
Q 005800 315 FRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRW--------EMIDVCDALELLSPVFE-------S---EEVRAYA 376 (676)
Q Consensus 315 ~R~~l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W--------~~i~~~dALeLL~~~f~-------d---~~VR~yA 376 (676)
++-|+..+|..+..|++.-||-+.+++.+.+.=-+.| ..=-...||+||..--. + ..+...+
T Consensus 6 lk~Yl~~~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~i 85 (108)
T PF10366_consen 6 LKCYLETNPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETI 85 (108)
T ss_pred HHHHHHhCHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHH
Confidence 3455656899999999888999999998765422223 33357888888753222 1 2355556
Q ss_pred HHHHhcCChhHHH
Q 005800 377 VCILERADDDELQ 389 (676)
Q Consensus 377 V~~L~~~~d~eL~ 389 (676)
|+-|++++.+++-
T Consensus 86 v~yL~~L~~~~~d 98 (108)
T PF10366_consen 86 VQYLQKLGNEDLD 98 (108)
T ss_pred HHHHHhCChhhhH
Confidence 7778777665543
No 174
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=33.49 E-value=1e+02 Score=30.49 Aligned_cols=78 Identities=19% Similarity=0.177 Sum_probs=50.7
Q ss_pred CHhhHhhccCCCCCCHHHHHHHHHHHhcCC--hhHHHHHHHH---HHHHHhccc---CcchHHHHHHHHHhhh--chhhH
Q 005800 355 DVCDALELLSPVFESEEVRAYAVCILERAD--DDELQCYLLQ---LVQALRFER---SDKSRLSQFLVQRSSH--NIELA 424 (676)
Q Consensus 355 ~~~dALeLL~~~f~d~~VR~yAV~~L~~~~--d~eL~~yLlQ---LVQaLkyE~---~~~s~La~FLi~Ral~--n~~ig 424 (676)
+..-|..||+-.=.++.+++.|++.|.++. .+++..-|++ .++||||=. ..++.-++-+++-|.+ |+.+=
T Consensus 60 Sk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf 139 (167)
T PF07035_consen 60 SKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLF 139 (167)
T ss_pred cHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHH
Confidence 344455555555557999999999998866 4555555654 899999852 2345556666676654 34555
Q ss_pred HHHHHHHH
Q 005800 425 SFLRWYVS 432 (676)
Q Consensus 425 ~~lfW~L~ 432 (676)
+..|+++.
T Consensus 140 ~~V~~ff~ 147 (167)
T PF07035_consen 140 YAVFRFFE 147 (167)
T ss_pred HHHHHHHH
Confidence 56666654
No 175
>cd08321 Pyrin_ASC-like Pyrin Death Domain found in ASC. Pyrin Death Domain found in ASC (Apoptosis-associated speck-like protein containing a CARD) and similar proteins. ASC is an adaptor molecule that functions in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. ASC contains two domains from the Death Domain (DD) superfamily, an N-terminal pyrin-like domain and a C-terminal Caspase activation and recruitment domain (CARD). Through these 2 domains, ASC serves as an adaptor for inflammasome integrity and oligomerizes to form supramolecular assemblies. Other members of this subfamily are associated with ATPase domains and their function remains unknown. In general, Pyrin is a subfamily of the DD superfamily and functions in several signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=33.10 E-value=50 Score=28.69 Aligned_cols=71 Identities=24% Similarity=0.303 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHhHHHhhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhHhhccCCCCCCHHHHHHHHHHHhc
Q 005800 303 TLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILER 382 (676)
Q Consensus 303 ~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~f~d~~VR~yAV~~L~~ 382 (676)
.|+++| +++|+++|.+.+.- =+.+|.|..- ...++.|--.+|-..|.-..-...+++.|++
T Consensus 10 ~L~~~E---lkkFK~~L~~~~~~---g~~~Ip~~~l-------------e~ad~~dla~lLv~~y~~~~A~~vt~~il~~ 70 (82)
T cd08321 10 DLEEDE---LKKFKWKLRDIPLE---GFPRIPRGEL-------------ENADRVDLVDKMVQFYGEEYAVEVTVKILRK 70 (82)
T ss_pred HhCHHH---HHHHHHHHhhhhhc---cCCCCChHhh-------------ccCCHHHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 566655 89999999875322 3457888733 3457777778888888877778899999999
Q ss_pred CChhHHHHHH
Q 005800 383 ADDDELQCYL 392 (676)
Q Consensus 383 ~~d~eL~~yL 392 (676)
++-.++.-.|
T Consensus 71 in~~~lae~L 80 (82)
T cd08321 71 MNQNELAEKL 80 (82)
T ss_pred hcchHHHHHH
Confidence 9887776554
No 176
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=29.81 E-value=5.2e+02 Score=30.53 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=75.0
Q ss_pred cCCCHHHHHHHHHHhcccCCCCHhhHhhccCCCC------CCHHHHHHHHHHHhc----CChhHHHHHHHHHHHHHhccc
Q 005800 334 EWSDVQEAKQALELMGRWEMIDVCDALELLSPVF------ESEEVRAYAVCILER----ADDDELQCYLLQLVQALRFER 403 (676)
Q Consensus 334 ~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~f------~d~~VR~yAV~~L~~----~~d~eL~~yLlQLVQaLkyE~ 403 (676)
.|.....+-|.+..|..-+|...+..+.=+-|.- +++.||+-|..+|.+ .+..++..|+|-|++++-.-.
T Consensus 267 kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPS 346 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcc
Confidence 7887777766666666666655555554444432 368999999999965 467889999999999987543
Q ss_pred -Cc-------------------chHHHHHHHHHhhhc-----hhhHHHHHHHHHHHccCcchhhh
Q 005800 404 -SD-------------------KSRLSQFLVQRSSHN-----IELASFLRWYVSVEFHDPVHAKR 443 (676)
Q Consensus 404 -~~-------------------~s~La~FLi~Ral~n-----~~ig~~lfW~L~~E~~~~~~~~r 443 (676)
+. .=+|..=|++|++.. .+-+-..+|.+-.+.+|+.....
T Consensus 347 ~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lap 411 (569)
T KOG1242|consen 347 CYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAP 411 (569)
T ss_pred cchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhh
Confidence 10 112333455666553 36778899999999988764333
No 177
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=28.73 E-value=69 Score=28.65 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHh
Q 005800 369 SEEVRAYAVCILERA---DDDELQCYLLQLVQALR 400 (676)
Q Consensus 369 d~~VR~yAV~~L~~~---~d~eL~~yLlQLVQaLk 400 (676)
|.+||-||.+.|-.+ ..++++.|+.++..+|-
T Consensus 40 d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~ 74 (97)
T PF12755_consen 40 DSRVRYYACEALYNISKVARGEILPYFNEIFDALC 74 (97)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999543 34566667777776654
No 178
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=25.96 E-value=1.1e+02 Score=36.84 Aligned_cols=93 Identities=25% Similarity=0.436 Sum_probs=0.0
Q ss_pred cccccCCCCcccccceEecccccCcCccCceEEEEEee----------------------------------cCCCCce-
Q 005800 74 TRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDV----------------------------------SCGKDER- 118 (676)
Q Consensus 74 T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~----------------------------------~~~~~~~- 118 (676)
|+.++.+-+++|+|...|.|. |+..+ ++.+-|||. .+....+
T Consensus 181 tsvk~~TLnPkW~EkF~F~Ie--Dv~tD-qfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tD 257 (1103)
T KOG1328|consen 181 TSVKKKTLNPKWSEKFQFTIE--DVQTD-QFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTD 257 (1103)
T ss_pred cccccccCCcchhhheeeehh--ccccc-eeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccc
Q ss_pred -eEeEEEEEe-----------ec----ccccccccceeeEeecCCCCCCCCCCCCCCCCCCCchhhHHHHHHH
Q 005800 119 -LVGGTTILL-----------FN----SKMQLKTGKQKLRLWPGKEADGSLPTSTPGKVPKNERGELERLEKL 175 (676)
Q Consensus 119 -~vG~~~~~L-----------Fd----~~~~Lr~G~~~l~lw~~~~~d~~~~~~~p~~~~~~~~~~~~rl~~l 175 (676)
.+|++||+| |. .+..=.||..+|++|-.+..++...+ .++..+.+..+|.|
T Consensus 258 DFLGciNipl~EiP~~Gld~WFkLepRS~~S~VqG~~~LklwLsT~e~~~a~s------e~~~~~~~~hielL 324 (1103)
T KOG1328|consen 258 DFLGCINIPLAEIPPDGLDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEGRAGS------EDETLDVKEHIELL 324 (1103)
T ss_pred ccccccccchhcCCcchHHHHhccCcccccccccceEEEEEEEeeeccccccC------ccchhhHHHHHHHH
No 179
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=25.50 E-value=1e+02 Score=25.71 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHhcCChhHHHHHHHHHHHHHh
Q 005800 368 ESEEVRAYAVCILERADDDELQCYLLQLVQALR 400 (676)
Q Consensus 368 ~d~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLk 400 (676)
+++.||..|+.+|.++.+.+. ++.|+++|+
T Consensus 12 ~~~~vr~~a~~~L~~~~~~~~---~~~L~~~l~ 41 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGDPEA---IPALIELLK 41 (88)
T ss_dssp SSHHHHHHHHHHHHCCTHHHH---HHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCHhH---HHHHHHHHc
Confidence 468999999999999988866 555556664
No 180
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=22.29 E-value=2.7e+02 Score=27.32 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=51.2
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCC--cccccceEecccccCcCccCceEEEEEeecCCCCceeEeEEEEEeecc
Q 005800 53 PELYVECALYIDGAPFGLPMRTRLESMGPM--YCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (676)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~--~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (676)
.+..+.+.||.||+-.+ +|..++.... ..+||-+.+ ++...|.. |++.||+..+ .....|+.+.+++-+.
T Consensus 35 ~~~~~~ikl~~N~k~V~---~T~~~~l~~dF~v~f~~~f~v--~i~~~Pes--i~l~i~E~~~-~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 35 QKTRYYIKLFFNDKEVS---RTRSRPLWSDFRVHFNEIFNV--QITRWPES--IKLEIYEKSG-LSDRLLAEVFVPVPGS 106 (168)
T ss_pred hheeEEEEEEECCEEEE---eeeeEecCCCeEEeccCEEEE--EEecCCCE--EEEEEEEccC-ccceEEEEEEeeCCCC
Confidence 45677778899998886 3444444332 346665554 55668865 8999999876 4567899999999885
Q ss_pred ccc
Q 005800 131 KMQ 133 (676)
Q Consensus 131 ~~~ 133 (676)
...
T Consensus 107 ~~~ 109 (168)
T PF15625_consen 107 TVH 109 (168)
T ss_pred ccc
Confidence 433
No 181
>cd08320 Pyrin_NALPs Pyrin death domain found in NALP proteins. Pyrin Death Domain found in NALP (NACHT, LRR and PYD domains) proteins including NALP1 (CARD7, NLRP1), NALP3 (NLRP3, Cryopyrin, CIAS1), and NALP12 (NLRP12, Monarch-1), among others. Mammals contains at least 14 NALP proteins, named NALP1-14 (or NLRP1-14). NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case of NALPs. The NBS-LRR family is also referred to as the NLR (Nod-like Receptor) or CATERPILLER (for CARD, transcription enhancer, R-(purine)-binding, pyrin, lots of LRRs) family. NALP1 contains an additional Caspase activation and recruitment domain (CARD) at the C-terminus. NALP1 and NALP3 are both involved in the assembly
Probab=22.08 E-value=1e+02 Score=26.99 Aligned_cols=69 Identities=28% Similarity=0.414 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHhHHHhhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhHhhccCCCCCCHHHHHHHHHHHhc
Q 005800 303 TLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILER 382 (676)
Q Consensus 303 ~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~f~d~~VR~yAV~~L~~ 382 (676)
.|+.+| +++|+++|.+.+. ..=+.+|+|...+ .-++.|--.+|...|.....-..|++.+++
T Consensus 9 ~L~~~E---lkkFK~~L~~~~~--~~~~~~Ip~~~le-------------~ad~~dLa~lLv~~y~~~~A~~~t~~if~~ 70 (86)
T cd08320 9 ELSKEE---LKKFKLLLKTEPL--QSGLKPIPWTEVK-------------KADGEDLAELLVEHYGGQQAWDVTLSIFEK 70 (86)
T ss_pred HcCHHH---HHHHHHHHhccch--hccCCCCChHhHh-------------cCCHHHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 566655 8999999987542 2335678887433 346777778888899988888999999999
Q ss_pred CChhHHH
Q 005800 383 ADDDELQ 389 (676)
Q Consensus 383 ~~d~eL~ 389 (676)
++-.+|.
T Consensus 71 mn~~dL~ 77 (86)
T cd08320 71 MNLRDLC 77 (86)
T ss_pred HChHHHH
Confidence 8877664
No 182
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.97 E-value=2.1e+02 Score=35.54 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHHhHHH-hhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhHhhccCCC
Q 005800 288 ERKSIQRILKYPPTRTLSGDEKQLLWKFRFS-LMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPV 366 (676)
Q Consensus 288 ~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~-l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~ 366 (676)
..+.+..|++| +.++.++.-+++|+|--. |..+|.+-.+++.+ .+.+++ ..+++++.|+.|.+.
T Consensus 541 ~~~~~e~ii~Y--L~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~---~~~~~~----------~sis~~~Vl~~l~~~ 605 (877)
T KOG2063|consen 541 QLDGLEKIIEY--LKKLGAENLDLILEYADWVLNKNPEAGIQIFTS---EDKQEA----------ESISRDDVLNYLKSK 605 (877)
T ss_pred hhhhHHHHHHH--HHHhcccchhHHHHHhhhhhccCchhheeeeec---cChhhh----------ccCCHHHHHHHhhhh
Confidence 34555667766 356666767899999655 45688888887766 222222 568999999988888
Q ss_pred CCCHHHH
Q 005800 367 FESEEVR 373 (676)
Q Consensus 367 f~d~~VR 373 (676)
+++-.|+
T Consensus 606 ~~~l~I~ 612 (877)
T KOG2063|consen 606 EPKLLIP 612 (877)
T ss_pred CcchhHH
Confidence 8876665
No 183
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=20.49 E-value=66 Score=22.18 Aligned_cols=14 Identities=43% Similarity=0.287 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHhc
Q 005800 369 SEEVRAYAVCILER 382 (676)
Q Consensus 369 d~~VR~yAV~~L~~ 382 (676)
++.||..|+.+|..
T Consensus 13 ~~~VR~~a~~~l~~ 26 (31)
T PF02985_consen 13 SPEVRQAAAECLGA 26 (31)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 68999999999964
Done!