Query 005802
Match_columns 676
No_of_seqs 594 out of 3532
Neff 11.5
Searched_HMMs 46136
Date Thu Mar 28 13:57:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.9E-94 6.4E-99 792.2 73.4 666 2-674 63-770 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2.7E-77 5.9E-82 641.9 63.9 524 84-674 84-607 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.2E-72 2.6E-77 621.0 58.9 584 20-622 46-652 (857)
4 PLN03218 maturation of RBCL 1; 100.0 5.2E-67 1.1E-71 562.8 53.9 523 19-556 364-907 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.8E-63 3.8E-68 535.5 55.5 504 121-630 366-915 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 7.3E-63 1.6E-67 530.3 49.7 456 2-528 99-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-36 5.2E-41 342.7 63.7 574 34-622 304-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-35 3.4E-40 336.0 63.5 610 2-627 205-869 (899)
9 PRK11447 cellulose synthase su 100.0 1.6E-26 3.4E-31 261.4 61.6 603 2-623 40-739 (1157)
10 PRK11447 cellulose synthase su 100.0 2.3E-25 4.9E-30 252.0 55.2 584 28-627 31-703 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 5E-23 1.1E-27 221.8 60.5 590 3-626 57-742 (987)
12 PRK09782 bacteriophage N4 rece 99.9 3E-21 6.5E-26 208.2 57.0 577 2-611 90-760 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 5.2E-21 1.1E-25 182.6 32.2 438 163-613 51-508 (966)
14 KOG2002 TPR-containing nuclear 99.9 1.3E-18 2.7E-23 175.5 41.1 428 124-556 269-743 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 5.8E-20 1.3E-24 175.6 29.7 424 195-629 51-490 (966)
16 TIGR00990 3a0801s09 mitochondr 99.9 7.7E-18 1.7E-22 179.3 43.3 420 195-625 130-572 (615)
17 KOG2002 TPR-containing nuclear 99.8 2.9E-16 6.3E-21 158.7 46.8 607 7-626 25-747 (1018)
18 PRK11788 tetratricopeptide rep 99.8 8.5E-19 1.8E-23 177.4 28.2 295 337-638 47-361 (389)
19 KOG4318 Bicoid mRNA stability 99.8 9.4E-17 2E-21 160.1 35.2 569 11-622 11-734 (1088)
20 PRK10049 pgaA outer membrane p 99.8 8.9E-17 1.9E-21 174.2 38.3 401 191-627 14-459 (765)
21 TIGR00990 3a0801s09 mitochondr 99.8 2.9E-16 6.2E-21 167.3 41.7 416 164-595 131-576 (615)
22 PRK14574 hmsH outer membrane p 99.8 7.3E-16 1.6E-20 163.4 43.9 441 136-597 45-520 (822)
23 PRK11788 tetratricopeptide rep 99.8 2E-17 4.3E-22 167.4 30.4 290 232-556 43-345 (389)
24 PRK10049 pgaA outer membrane p 99.8 5.8E-16 1.3E-20 167.9 43.5 402 171-597 26-463 (765)
25 PRK15174 Vi polysaccharide exp 99.8 3.2E-16 6.9E-21 166.1 38.8 326 225-594 43-385 (656)
26 PRK15174 Vi polysaccharide exp 99.8 1.3E-16 2.8E-21 169.1 35.1 319 301-627 49-384 (656)
27 KOG0495 HAT repeat protein [RN 99.8 4.3E-13 9.4E-18 130.0 52.8 485 136-637 387-891 (913)
28 KOG2076 RNA polymerase III tra 99.8 4.8E-13 1E-17 135.0 47.4 608 3-620 152-891 (895)
29 PRK14574 hmsH outer membrane p 99.7 2.2E-13 4.9E-18 144.7 47.0 445 97-578 44-534 (822)
30 KOG4422 Uncharacterized conser 99.7 2.3E-13 5E-18 125.3 38.6 322 87-488 116-463 (625)
31 KOG4422 Uncharacterized conser 99.7 5.3E-14 1.1E-18 129.4 32.6 402 3-424 128-593 (625)
32 KOG2003 TPR repeat-containing 99.7 8.3E-15 1.8E-19 135.5 27.1 438 165-610 206-709 (840)
33 KOG0495 HAT repeat protein [RN 99.7 1.2E-11 2.6E-16 120.3 47.8 572 4-602 265-892 (913)
34 KOG2076 RNA polymerase III tra 99.7 1.2E-12 2.7E-17 132.0 42.2 541 38-607 152-786 (895)
35 PF13429 TPR_15: Tetratricopep 99.6 1.7E-15 3.7E-20 144.7 11.1 256 362-623 14-276 (280)
36 KOG2003 TPR repeat-containing 99.6 1.2E-11 2.6E-16 114.9 32.2 423 197-626 206-691 (840)
37 KOG1915 Cell cycle control pro 99.6 2.6E-10 5.7E-15 106.9 40.5 426 3-500 86-547 (677)
38 KOG1915 Cell cycle control pro 99.6 3.2E-10 6.9E-15 106.4 38.9 480 137-623 85-624 (677)
39 PRK10747 putative protoheme IX 99.5 8.6E-12 1.9E-16 124.7 28.6 274 339-623 98-389 (398)
40 KOG0547 Translocase of outer m 99.5 5E-11 1.1E-15 112.2 31.0 214 404-623 338-565 (606)
41 KOG1126 DNA-binding cell divis 99.5 2.1E-12 4.5E-17 126.4 21.2 278 339-626 333-622 (638)
42 KOG4318 Bicoid mRNA stability 99.5 2.7E-10 5.8E-15 115.0 34.6 536 53-628 22-598 (1088)
43 KOG2047 mRNA splicing factor [ 99.5 2.2E-08 4.7E-13 98.0 45.6 539 20-610 76-709 (835)
44 KOG1126 DNA-binding cell divis 99.5 8E-12 1.7E-16 122.4 22.5 251 370-627 333-589 (638)
45 PRK10747 putative protoheme IX 99.5 6.3E-11 1.4E-15 118.6 29.8 209 346-590 174-390 (398)
46 TIGR00540 hemY_coli hemY prote 99.5 3.7E-11 8.1E-16 120.9 28.3 278 338-623 97-398 (409)
47 KOG1173 Anaphase-promoting com 99.5 2.5E-10 5.3E-15 109.8 31.8 265 355-626 243-520 (611)
48 KOG1155 Anaphase-promoting com 99.5 3.6E-10 7.8E-15 105.9 31.1 317 301-623 171-494 (559)
49 KOG1155 Anaphase-promoting com 99.4 3E-09 6.5E-14 99.8 34.9 347 168-519 172-533 (559)
50 PF13429 TPR_15: Tetratricopep 99.4 3.7E-13 8E-18 128.7 9.5 227 397-626 13-245 (280)
51 TIGR00540 hemY_coli hemY prote 99.4 7.3E-10 1.6E-14 111.6 33.4 146 443-590 245-399 (409)
52 COG3071 HemY Uncharacterized e 99.4 1.6E-09 3.4E-14 100.1 30.8 287 237-590 97-390 (400)
53 COG2956 Predicted N-acetylgluc 99.4 2.5E-10 5.4E-15 102.0 24.3 301 339-645 49-368 (389)
54 KOG0547 Translocase of outer m 99.4 1.4E-09 3E-14 102.7 29.6 219 366-592 336-568 (606)
55 COG3071 HemY Uncharacterized e 99.4 9.8E-10 2.1E-14 101.5 27.6 277 338-623 97-389 (400)
56 TIGR02521 type_IV_pilW type IV 99.4 1.2E-10 2.6E-15 108.8 21.8 197 427-624 31-232 (234)
57 KOG3616 Selective LIM binding 99.4 1.8E-08 3.9E-13 99.8 36.7 519 37-630 456-1030(1636)
58 KOG3785 Uncharacterized conser 99.3 4.9E-08 1.1E-12 88.6 35.5 448 94-593 29-493 (557)
59 KOG2047 mRNA splicing factor [ 99.3 2.5E-07 5.5E-12 90.8 42.3 521 88-623 103-686 (835)
60 KOG0985 Vesicle coat protein c 99.3 2.5E-07 5.4E-12 95.2 43.5 497 90-623 609-1248(1666)
61 KOG2376 Signal recognition par 99.3 2.9E-08 6.3E-13 96.3 34.3 447 128-621 15-517 (652)
62 PF13041 PPR_2: PPR repeat fam 99.3 6E-12 1.3E-16 83.4 5.9 50 222-271 1-50 (50)
63 KOG1174 Anaphase-promoting com 99.3 2.4E-08 5.2E-13 92.5 30.8 189 404-597 312-507 (564)
64 COG2956 Predicted N-acetylgluc 99.3 9.1E-09 2E-13 92.2 27.0 281 237-556 48-345 (389)
65 KOG1840 Kinesin light chain [C 99.3 1.2E-09 2.5E-14 108.7 21.9 231 393-623 200-478 (508)
66 COG3063 PilF Tfp pilus assembl 99.2 8.2E-10 1.8E-14 94.2 16.8 162 460-626 37-204 (250)
67 KOG0985 Vesicle coat protein c 99.2 4.3E-06 9.3E-11 86.5 45.4 555 5-607 658-1325(1666)
68 KOG1173 Anaphase-promoting com 99.2 6.4E-08 1.4E-12 93.6 30.8 282 255-573 240-534 (611)
69 PF13041 PPR_2: PPR repeat fam 99.2 3.7E-11 8E-16 79.6 6.5 50 456-505 1-50 (50)
70 KOG1129 TPR repeat-containing 99.2 5.9E-10 1.3E-14 99.6 15.7 222 400-626 231-460 (478)
71 KOG1156 N-terminal acetyltrans 99.2 1.9E-06 4.2E-11 85.0 40.8 436 4-454 21-509 (700)
72 KOG3616 Selective LIM binding 99.2 1.1E-06 2.3E-11 87.7 38.9 515 38-620 544-1130(1636)
73 KOG4162 Predicted calmodulin-b 99.2 4.4E-07 9.4E-12 91.3 36.2 419 189-625 320-784 (799)
74 PRK12370 invasion protein regu 99.2 1E-08 2.2E-13 107.5 25.8 244 371-625 276-536 (553)
75 TIGR02521 type_IV_pilW type IV 99.2 1.1E-08 2.3E-13 95.6 23.3 162 427-591 65-233 (234)
76 KOG1174 Anaphase-promoting com 99.2 1.4E-06 3.1E-11 81.0 35.2 264 355-627 231-503 (564)
77 KOG1156 N-terminal acetyltrans 99.2 4.7E-07 1E-11 89.2 33.6 358 205-590 88-468 (700)
78 PRK12370 invasion protein regu 99.1 4.4E-09 9.6E-14 110.2 21.6 211 406-624 275-502 (553)
79 PRK11189 lipoprotein NlpI; Pro 99.1 5.3E-09 1.2E-13 100.0 19.5 190 430-626 67-267 (296)
80 KOG3785 Uncharacterized conser 99.1 2.7E-07 5.9E-12 83.8 28.7 147 206-359 165-319 (557)
81 KOG1129 TPR repeat-containing 99.1 1.8E-09 3.8E-14 96.6 14.6 234 360-599 227-467 (478)
82 KOG2376 Signal recognition par 99.1 1.6E-06 3.4E-11 84.7 35.5 460 2-519 24-517 (652)
83 KOG1127 TPR repeat-containing 99.1 1.1E-06 2.3E-11 90.8 34.5 344 277-627 801-1178(1238)
84 KOG4162 Predicted calmodulin-b 99.1 1.9E-06 4.2E-11 86.8 35.4 133 460-596 652-789 (799)
85 PRK11189 lipoprotein NlpI; Pro 99.1 8.3E-08 1.8E-12 91.9 24.4 227 370-604 40-280 (296)
86 KOG1840 Kinesin light chain [C 99.0 2.1E-07 4.6E-12 92.8 26.4 94 495-588 369-477 (508)
87 PF12569 NARP1: NMDA receptor- 99.0 3.9E-06 8.4E-11 85.1 35.6 430 167-620 11-516 (517)
88 KOG3617 WD40 and TPR repeat-co 99.0 3.4E-05 7.3E-10 78.4 40.8 153 54-219 724-885 (1416)
89 COG3063 PilF Tfp pilus assembl 99.0 1E-07 2.2E-12 81.7 19.4 192 431-625 39-237 (250)
90 PF04733 Coatomer_E: Coatomer 99.0 1.8E-08 3.8E-13 94.8 15.8 79 544-622 182-263 (290)
91 KOG3617 WD40 and TPR repeat-co 99.0 5.2E-06 1.1E-10 84.1 33.3 221 4-251 742-994 (1416)
92 KOG4340 Uncharacterized conser 99.0 4.1E-06 9E-11 74.6 28.0 382 227-621 13-440 (459)
93 KOG0548 Molecular co-chaperone 98.9 1.3E-06 2.8E-11 84.5 26.6 215 397-625 229-456 (539)
94 PF12569 NARP1: NMDA receptor- 98.9 4.4E-07 9.6E-12 91.8 24.9 148 476-626 129-293 (517)
95 KOG4340 Uncharacterized conser 98.9 1.7E-06 3.6E-11 77.0 24.9 121 171-292 89-211 (459)
96 KOG0624 dsRNA-activated protei 98.9 4.5E-06 9.8E-11 75.9 26.8 301 299-625 43-371 (504)
97 KOG1127 TPR repeat-containing 98.9 9E-06 2E-10 84.3 31.8 592 6-623 474-1137(1238)
98 PF04733 Coatomer_E: Coatomer 98.9 1.6E-07 3.4E-12 88.4 17.5 225 359-595 38-270 (290)
99 KOG1125 TPR repeat-containing 98.8 1.3E-07 2.8E-12 92.0 15.9 216 403-624 296-527 (579)
100 TIGR03302 OM_YfiO outer membra 98.8 3.3E-07 7.1E-12 85.3 17.7 181 425-625 31-233 (235)
101 KOG0548 Molecular co-chaperone 98.8 1.4E-05 2.9E-10 77.6 28.3 248 359-619 227-484 (539)
102 PRK10370 formate-dependent nit 98.8 2.8E-07 6E-12 81.8 15.6 147 465-626 23-175 (198)
103 PRK15359 type III secretion sy 98.8 2.5E-07 5.4E-12 77.6 13.6 95 532-626 27-123 (144)
104 cd05804 StaR_like StaR_like; a 98.7 1.6E-05 3.5E-10 79.4 27.9 258 364-625 51-337 (355)
105 KOG0624 dsRNA-activated protei 98.7 0.00012 2.6E-09 66.9 29.1 191 401-597 164-377 (504)
106 PRK15359 type III secretion sy 98.7 3.4E-07 7.4E-12 76.8 12.5 122 479-607 14-138 (144)
107 KOG1914 mRNA cleavage and poly 98.7 0.00039 8.5E-09 67.8 34.1 175 371-547 346-528 (656)
108 KOG1070 rRNA processing protei 98.7 1.7E-06 3.8E-11 92.4 19.6 199 424-626 1455-1665(1710)
109 PRK15179 Vi polysaccharide bio 98.6 2.9E-06 6.4E-11 89.4 20.2 131 490-623 83-216 (694)
110 PRK15363 pathogenicity island 98.6 1.3E-06 2.8E-11 71.6 13.0 96 529-624 35-132 (157)
111 cd05804 StaR_like StaR_like; a 98.6 0.00011 2.4E-09 73.4 29.9 266 357-624 7-293 (355)
112 PRK04841 transcriptional regul 98.6 0.00011 2.3E-09 83.7 32.7 321 304-625 384-761 (903)
113 KOG3081 Vesicle coat complex C 98.6 4.5E-05 9.7E-10 67.3 21.7 176 413-595 94-276 (299)
114 TIGR02552 LcrH_SycD type III s 98.5 1E-06 2.2E-11 73.8 11.4 101 525-625 12-115 (135)
115 KOG1128 Uncharacterized conser 98.5 1.4E-05 3E-10 80.4 20.7 189 422-625 393-583 (777)
116 PF12854 PPR_1: PPR repeat 98.5 8E-08 1.7E-12 56.7 3.2 33 20-52 2-34 (34)
117 PRK10370 formate-dependent nit 98.5 8.1E-06 1.8E-10 72.5 17.3 154 434-599 23-182 (198)
118 PLN02789 farnesyltranstransfer 98.5 3.3E-05 7.2E-10 73.9 22.0 212 406-621 51-299 (320)
119 KOG1128 Uncharacterized conser 98.5 3.8E-06 8.3E-11 84.2 15.9 219 389-626 395-618 (777)
120 PRK04841 transcriptional regul 98.5 0.00048 1E-08 78.4 35.3 259 334-593 461-763 (903)
121 PF12854 PPR_1: PPR repeat 98.5 2.3E-07 5.1E-12 54.8 4.1 32 524-555 2-33 (34)
122 COG5010 TadD Flp pilus assembl 98.5 2E-05 4.4E-10 69.6 17.3 155 462-619 70-226 (257)
123 COG5010 TadD Flp pilus assembl 98.5 6.3E-06 1.4E-10 72.7 14.1 136 489-626 62-199 (257)
124 TIGR03302 OM_YfiO outer membra 98.4 1.1E-05 2.4E-10 75.0 16.8 182 389-592 30-234 (235)
125 KOG1070 rRNA processing protei 98.4 5.6E-05 1.2E-09 81.5 22.4 220 291-512 1455-1690(1710)
126 KOG3060 Uncharacterized conser 98.4 2.4E-05 5.2E-10 68.4 16.0 119 471-592 99-222 (289)
127 PLN02789 farnesyltranstransfer 98.4 4.5E-05 9.8E-10 73.0 19.0 190 434-627 44-253 (320)
128 COG4783 Putative Zn-dependent 98.4 0.00013 2.8E-09 70.4 21.5 113 503-618 316-431 (484)
129 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 5.8E-06 1.3E-10 80.5 12.7 123 496-623 172-296 (395)
130 PRK15179 Vi polysaccharide bio 98.3 0.00011 2.3E-09 78.0 21.7 137 457-598 85-225 (694)
131 COG4783 Putative Zn-dependent 98.3 0.00014 2.9E-09 70.3 19.7 145 460-626 308-456 (484)
132 KOG1125 TPR repeat-containing 98.3 5.4E-05 1.2E-09 74.3 16.8 217 395-617 322-564 (579)
133 KOG2053 Mitochondrial inherita 98.2 0.01 2.2E-07 62.0 38.2 160 460-622 438-606 (932)
134 PRK14720 transcript cleavage f 98.2 0.00017 3.8E-09 77.1 21.4 148 429-607 118-269 (906)
135 PF09976 TPR_21: Tetratricopep 98.2 3.4E-05 7.3E-10 65.1 13.2 115 506-621 24-144 (145)
136 KOG3081 Vesicle coat complex C 98.2 0.0002 4.4E-09 63.3 17.9 244 363-623 15-270 (299)
137 KOG2053 Mitochondrial inherita 98.2 0.014 3E-07 61.1 41.0 160 395-559 439-609 (932)
138 KOG3060 Uncharacterized conser 98.2 9.7E-05 2.1E-09 64.7 14.8 186 439-629 24-225 (289)
139 TIGR02552 LcrH_SycD type III s 98.2 3.9E-05 8.5E-10 64.1 12.5 114 480-597 5-121 (135)
140 cd00189 TPR Tetratricopeptide 98.1 2.2E-05 4.7E-10 61.0 9.7 94 532-625 3-98 (100)
141 PRK14720 transcript cleavage f 98.1 0.00025 5.4E-09 76.0 19.8 142 470-629 95-257 (906)
142 KOG0553 TPR repeat-containing 98.1 1.4E-05 3.1E-10 71.9 9.1 96 503-601 91-189 (304)
143 TIGR00756 PPR pentatricopeptid 98.1 4.7E-06 1E-10 50.3 4.2 35 225-259 1-35 (35)
144 PLN03088 SGT1, suppressor of 98.1 4E-05 8.7E-10 75.3 13.0 101 501-604 10-113 (356)
145 PF12895 Apc3: Anaphase-promot 98.1 2.3E-06 4.9E-11 64.3 3.3 78 542-620 2-83 (84)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.0001 2.2E-09 72.0 15.0 124 429-556 171-295 (395)
147 TIGR02795 tol_pal_ybgF tol-pal 98.1 4.6E-05 9.9E-10 62.0 10.7 96 531-626 4-107 (119)
148 PF13414 TPR_11: TPR repeat; P 98.1 7.5E-06 1.6E-10 58.8 5.2 65 560-624 2-67 (69)
149 PF09976 TPR_21: Tetratricopep 98.1 0.00025 5.3E-09 59.8 15.0 124 461-587 15-144 (145)
150 TIGR00756 PPR pentatricopeptid 98.1 9.4E-06 2E-10 48.9 4.7 35 459-493 1-35 (35)
151 PF13812 PPR_3: Pentatricopept 98.0 7.3E-06 1.6E-10 49.0 4.0 33 225-257 2-34 (34)
152 PRK15331 chaperone protein Sic 98.0 0.00016 3.5E-09 59.7 12.7 100 524-623 31-133 (165)
153 PF13432 TPR_16: Tetratricopep 98.0 1.1E-05 2.3E-10 57.1 5.0 60 567-626 3-62 (65)
154 PF13812 PPR_3: Pentatricopept 98.0 1.5E-05 3.3E-10 47.6 4.6 33 459-491 2-34 (34)
155 COG4235 Cytochrome c biogenesi 98.0 4.5E-05 9.8E-10 69.3 9.1 106 526-631 152-263 (287)
156 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00018 3.8E-09 58.5 11.2 103 495-597 4-112 (119)
157 KOG0553 TPR repeat-containing 97.9 9.5E-05 2.1E-09 66.8 9.2 99 466-569 89-190 (304)
158 PF14559 TPR_19: Tetratricopep 97.8 3.9E-05 8.5E-10 54.8 5.4 55 572-626 2-56 (68)
159 PLN03088 SGT1, suppressor of 97.8 0.00022 4.8E-09 70.1 12.0 102 464-569 8-111 (356)
160 PRK02603 photosystem I assembl 97.8 0.00021 4.6E-09 62.3 10.5 98 529-626 35-151 (172)
161 KOG1914 mRNA cleavage and poly 97.7 0.061 1.3E-06 53.2 37.3 208 409-619 310-534 (656)
162 CHL00033 ycf3 photosystem I as 97.7 0.00032 6.9E-09 61.0 10.0 93 529-621 35-139 (168)
163 PF13432 TPR_16: Tetratricopep 97.7 8E-05 1.7E-09 52.6 5.2 61 535-595 3-65 (65)
164 PF13371 TPR_9: Tetratricopept 97.7 0.00011 2.4E-09 53.4 6.0 58 569-626 3-60 (73)
165 PF01535 PPR: PPR repeat; Int 97.7 5.4E-05 1.2E-09 43.9 3.5 31 225-255 1-31 (31)
166 PF07079 DUF1347: Protein of u 97.7 0.064 1.4E-06 51.9 32.1 124 439-567 391-531 (549)
167 cd00189 TPR Tetratricopeptide 97.6 0.00054 1.2E-08 52.8 9.8 91 499-592 6-99 (100)
168 PF12895 Apc3: Anaphase-promot 97.6 0.00017 3.7E-09 54.1 6.4 80 471-554 2-83 (84)
169 PF01535 PPR: PPR repeat; Int 97.6 8E-05 1.7E-09 43.2 3.6 31 459-489 1-31 (31)
170 PF14559 TPR_19: Tetratricopep 97.6 7E-05 1.5E-09 53.5 3.9 59 541-599 3-63 (68)
171 PRK10153 DNA-binding transcrip 97.6 0.0016 3.5E-08 67.0 14.9 67 560-627 419-485 (517)
172 PF05843 Suf: Suppressor of fo 97.6 0.0016 3.6E-08 61.6 13.9 134 459-595 2-141 (280)
173 PRK02603 photosystem I assembl 97.6 0.0015 3.3E-08 56.9 12.6 130 457-610 34-166 (172)
174 PRK10153 DNA-binding transcrip 97.6 0.0026 5.7E-08 65.4 16.1 140 456-597 335-489 (517)
175 PF08579 RPM2: Mitochondrial r 97.5 0.0012 2.5E-08 50.4 9.5 80 228-307 29-117 (120)
176 PF14938 SNAP: Soluble NSF att 97.5 0.022 4.8E-07 54.3 20.4 128 434-562 121-269 (282)
177 PF13414 TPR_11: TPR repeat; P 97.5 0.00029 6.2E-09 50.5 5.9 65 528-592 2-69 (69)
178 KOG2280 Vacuolar assembly/sort 97.5 0.17 3.6E-06 52.4 30.4 336 252-620 425-795 (829)
179 PF04840 Vps16_C: Vps16, C-ter 97.5 0.1 2.3E-06 50.0 31.9 102 434-552 184-285 (319)
180 CHL00033 ycf3 photosystem I as 97.5 0.0019 4.1E-08 56.2 11.6 112 497-611 39-167 (168)
181 PRK10803 tol-pal system protei 97.4 0.0012 2.7E-08 61.2 10.2 85 540-624 154-246 (263)
182 COG4700 Uncharacterized protei 97.4 0.024 5.2E-07 47.6 16.1 132 489-622 85-220 (251)
183 PF12688 TPR_5: Tetratrico pep 97.4 0.0013 2.9E-08 52.2 8.7 87 535-621 7-101 (120)
184 KOG0543 FKBP-type peptidyl-pro 97.4 0.0015 3.2E-08 62.1 10.2 82 563-670 259-340 (397)
185 KOG0550 Molecular chaperone (D 97.4 0.0079 1.7E-07 57.1 14.6 152 466-623 177-349 (486)
186 PF10037 MRP-S27: Mitochondria 97.4 0.0026 5.6E-08 62.7 12.2 63 460-522 105-167 (429)
187 COG4700 Uncharacterized protei 97.4 0.0057 1.2E-07 51.2 12.1 107 521-627 81-192 (251)
188 PF08579 RPM2: Mitochondrial r 97.3 0.0027 5.9E-08 48.4 9.3 79 462-541 29-116 (120)
189 PF13431 TPR_17: Tetratricopep 97.3 0.00013 2.9E-09 43.0 1.9 33 584-616 2-34 (34)
190 KOG2041 WD40 repeat protein [G 97.3 0.24 5.2E-06 50.7 27.4 202 22-251 689-905 (1189)
191 PF04840 Vps16_C: Vps16, C-ter 97.3 0.17 3.6E-06 48.7 28.8 112 392-519 177-288 (319)
192 PF10037 MRP-S27: Mitochondria 97.3 0.0023 5E-08 63.0 10.8 117 191-307 65-186 (429)
193 KOG2041 WD40 repeat protein [G 97.3 0.28 6.1E-06 50.2 25.8 186 157-356 689-909 (1189)
194 PF05843 Suf: Suppressor of fo 97.2 0.003 6.5E-08 59.9 10.8 129 494-624 2-136 (280)
195 KOG1130 Predicted G-alpha GTPa 97.2 0.0061 1.3E-07 57.6 12.1 129 495-623 197-343 (639)
196 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0014 3E-08 63.8 8.3 67 558-624 72-141 (453)
197 KOG0550 Molecular chaperone (D 97.2 0.15 3.2E-06 48.8 20.7 87 467-556 258-348 (486)
198 PF13371 TPR_9: Tetratricopept 97.2 0.0011 2.3E-08 48.1 5.7 65 536-600 2-68 (73)
199 PRK15363 pathogenicity island 97.2 0.0045 9.8E-08 51.2 9.7 88 500-590 42-132 (157)
200 PF14938 SNAP: Soluble NSF att 97.2 0.032 7E-07 53.2 17.2 111 434-556 101-223 (282)
201 PF07079 DUF1347: Protein of u 97.1 0.28 6.1E-06 47.7 34.4 190 428-622 299-522 (549)
202 PRK10803 tol-pal system protei 97.1 0.0051 1.1E-07 57.1 11.1 102 494-595 144-251 (263)
203 PRK10866 outer membrane biogen 97.1 0.078 1.7E-06 49.0 18.3 56 567-622 181-239 (243)
204 KOG1538 Uncharacterized conser 97.1 0.11 2.4E-06 52.5 19.6 84 393-485 748-844 (1081)
205 PF13428 TPR_14: Tetratricopep 97.0 0.00088 1.9E-08 42.5 3.6 42 562-603 2-43 (44)
206 COG3898 Uncharacterized membra 97.0 0.34 7.4E-06 46.1 26.0 241 368-624 132-392 (531)
207 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.39 8.4E-06 46.6 28.9 133 458-594 397-535 (660)
208 COG3898 Uncharacterized membra 97.0 0.36 7.8E-06 46.0 23.9 254 358-621 84-355 (531)
209 PF12688 TPR_5: Tetratrico pep 97.0 0.032 6.9E-07 44.5 12.6 93 464-556 7-102 (120)
210 PF13281 DUF4071: Domain of un 97.0 0.085 1.8E-06 51.1 17.7 161 431-594 145-338 (374)
211 PRK11906 transcriptional regul 96.9 0.013 2.7E-07 57.5 11.9 66 559-624 336-401 (458)
212 PF13424 TPR_12: Tetratricopep 96.9 0.0012 2.7E-08 48.5 4.1 60 563-622 7-73 (78)
213 PF13525 YfiO: Outer membrane 96.9 0.038 8.3E-07 49.6 14.4 50 567-616 147-199 (203)
214 KOG2796 Uncharacterized conser 96.9 0.076 1.7E-06 47.4 15.1 136 460-595 179-320 (366)
215 PF06239 ECSIT: Evolutionarily 96.9 0.0094 2E-07 51.8 9.3 89 221-309 44-153 (228)
216 KOG1538 Uncharacterized conser 96.9 0.11 2.4E-06 52.5 17.8 226 127-382 600-843 (1081)
217 KOG2796 Uncharacterized conser 96.9 0.047 1E-06 48.6 13.7 133 495-628 179-319 (366)
218 KOG2280 Vacuolar assembly/sort 96.9 0.75 1.6E-05 47.8 28.8 85 294-380 684-768 (829)
219 PF06239 ECSIT: Evolutionarily 96.8 0.015 3.2E-07 50.7 10.0 89 455-544 44-153 (228)
220 PF13512 TPR_18: Tetratricopep 96.8 0.031 6.7E-07 45.5 11.3 93 534-626 15-130 (142)
221 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.57 1.2E-05 45.5 29.2 124 395-520 400-529 (660)
222 KOG4234 TPR repeat-containing 96.8 0.012 2.6E-07 50.0 9.0 91 537-627 103-200 (271)
223 KOG0543 FKBP-type peptidyl-pro 96.7 0.011 2.4E-07 56.4 9.7 96 529-624 257-355 (397)
224 COG4235 Cytochrome c biogenesi 96.6 0.06 1.3E-06 49.6 13.3 104 490-596 153-262 (287)
225 PF13424 TPR_12: Tetratricopep 96.6 0.0022 4.8E-08 47.2 3.4 62 529-590 5-75 (78)
226 PRK10866 outer membrane biogen 96.5 0.68 1.5E-05 42.8 20.6 53 501-553 183-236 (243)
227 COG1729 Uncharacterized protei 96.5 0.012 2.6E-07 53.2 8.0 61 567-627 184-247 (262)
228 PF13525 YfiO: Outer membrane 96.4 0.16 3.5E-06 45.6 14.8 144 463-626 10-172 (203)
229 PF09205 DUF1955: Domain of un 96.4 0.33 7.2E-06 38.4 13.9 141 468-627 12-152 (161)
230 KOG2114 Vacuolar assembly/sort 96.3 2 4.2E-05 45.6 27.4 181 162-353 336-518 (933)
231 KOG4555 TPR repeat-containing 96.2 0.037 8E-07 43.4 8.0 90 537-626 51-146 (175)
232 KOG1130 Predicted G-alpha GTPa 96.2 0.0088 1.9E-07 56.6 5.5 93 530-622 196-302 (639)
233 KOG1258 mRNA processing protei 96.2 1.8 3.8E-05 44.2 27.7 181 426-609 296-489 (577)
234 PF10300 DUF3808: Protein of u 96.1 0.28 6.1E-06 50.3 16.4 161 461-624 191-376 (468)
235 PF03704 BTAD: Bacterial trans 96.1 0.02 4.3E-07 48.3 6.9 61 563-623 64-124 (146)
236 PRK11906 transcriptional regul 96.1 0.49 1.1E-05 46.8 16.8 143 473-619 273-431 (458)
237 PF12921 ATP13: Mitochondrial 96.0 0.08 1.7E-06 42.7 9.5 51 488-538 47-97 (126)
238 PRK11619 lytic murein transgly 95.9 3 6.5E-05 44.8 31.1 115 507-621 255-372 (644)
239 COG3118 Thioredoxin domain-con 95.7 0.56 1.2E-05 43.2 14.4 120 502-625 143-266 (304)
240 COG0457 NrfG FOG: TPR repeat [ 95.7 1.7 3.6E-05 40.0 26.0 196 427-626 59-267 (291)
241 KOG2114 Vacuolar assembly/sort 95.7 3.6 7.8E-05 43.8 24.0 179 58-251 336-517 (933)
242 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.065 1.4E-06 52.6 9.0 62 529-590 75-141 (453)
243 COG1729 Uncharacterized protei 95.6 0.085 1.8E-06 47.9 8.9 91 505-595 153-249 (262)
244 KOG1941 Acetylcholine receptor 95.5 0.21 4.5E-06 47.0 11.0 123 499-621 128-272 (518)
245 PF13512 TPR_18: Tetratricopep 95.5 0.38 8.2E-06 39.3 11.3 115 465-595 17-133 (142)
246 KOG1941 Acetylcholine receptor 95.3 2.7 6E-05 39.9 19.0 24 597-620 333-356 (518)
247 KOG3364 Membrane protein invol 95.2 0.29 6.3E-06 39.0 9.4 90 558-673 29-123 (149)
248 PF14853 Fis1_TPR_C: Fis1 C-te 95.2 0.094 2E-06 34.5 5.8 50 598-673 4-53 (53)
249 PF07719 TPR_2: Tetratricopept 95.1 0.054 1.2E-06 31.8 4.3 32 563-594 3-34 (34)
250 PF03704 BTAD: Bacterial trans 95.1 0.19 4.2E-06 42.3 9.3 71 460-531 64-138 (146)
251 COG3118 Thioredoxin domain-con 95.1 2.4 5.2E-05 39.3 16.3 148 466-615 142-292 (304)
252 smart00299 CLH Clathrin heavy 95.0 1.4 3E-05 36.7 14.3 42 463-505 12-53 (140)
253 COG4105 ComL DNA uptake lipopr 95.0 2.7 5.8E-05 38.2 16.4 70 460-529 36-107 (254)
254 PF12921 ATP13: Mitochondrial 94.8 0.29 6.3E-06 39.5 9.0 47 524-570 47-97 (126)
255 PF00515 TPR_1: Tetratricopept 94.7 0.057 1.2E-06 31.7 3.6 31 563-593 3-33 (34)
256 KOG2610 Uncharacterized conser 94.7 0.3 6.5E-06 45.4 9.7 160 469-631 114-283 (491)
257 PF04053 Coatomer_WDAD: Coatom 94.7 0.89 1.9E-05 46.0 14.1 154 3-186 274-428 (443)
258 PRK09687 putative lyase; Provi 94.6 4.1 9E-05 38.6 23.0 238 51-302 32-275 (280)
259 PRK15331 chaperone protein Sic 94.6 0.57 1.2E-05 39.3 10.2 85 502-589 46-133 (165)
260 PF10345 Cohesin_load: Cohesin 94.4 8.8 0.00019 41.4 36.9 84 237-320 152-251 (608)
261 KOG3941 Intermediate in Toll s 94.4 0.39 8.4E-06 43.6 9.4 98 447-545 54-174 (406)
262 COG0457 NrfG FOG: TPR repeat [ 94.4 4 8.7E-05 37.4 25.2 197 393-593 60-268 (291)
263 PF13281 DUF4071: Domain of un 94.3 4 8.6E-05 39.9 16.7 31 491-521 303-333 (374)
264 smart00299 CLH Clathrin heavy 94.2 2.8 6E-05 34.9 15.0 22 498-519 74-95 (140)
265 PF02259 FAT: FAT domain; Int 94.2 5.2 0.00011 39.7 18.6 149 457-608 145-305 (352)
266 KOG1585 Protein required for f 94.1 4.3 9.2E-05 36.4 16.8 86 532-618 153-250 (308)
267 KOG3941 Intermediate in Toll s 94.0 0.45 9.7E-06 43.2 9.0 97 221-317 64-182 (406)
268 KOG2610 Uncharacterized conser 93.9 2 4.4E-05 40.3 13.2 155 438-596 114-284 (491)
269 KOG4648 Uncharacterized conser 93.9 0.2 4.2E-06 46.7 6.7 90 502-594 106-198 (536)
270 COG4105 ComL DNA uptake lipopr 93.8 5.1 0.00011 36.5 20.1 180 427-624 35-233 (254)
271 PF09205 DUF1955: Domain of un 93.8 0.93 2E-05 36.1 9.2 139 136-290 13-151 (161)
272 PF08631 SPO22: Meiosis protei 93.7 6.6 0.00014 37.3 22.6 28 460-487 123-150 (278)
273 PF13176 TPR_7: Tetratricopept 93.6 0.12 2.5E-06 30.9 3.4 25 598-622 2-26 (36)
274 PF04053 Coatomer_WDAD: Coatom 93.6 1.9 4E-05 43.8 13.8 131 125-282 295-425 (443)
275 COG4649 Uncharacterized protei 93.6 1.3 2.8E-05 37.2 10.2 128 460-589 61-195 (221)
276 PF13428 TPR_14: Tetratricopep 93.5 0.11 2.5E-06 32.7 3.4 33 595-627 1-33 (44)
277 PF10300 DUF3808: Protein of u 93.2 2.9 6.2E-05 43.1 14.7 157 432-590 193-376 (468)
278 KOG1920 IkappaB kinase complex 93.2 17 0.00038 40.7 25.8 143 430-588 911-1053(1265)
279 PF07035 Mic1: Colon cancer-as 93.1 5 0.00011 34.1 13.9 58 358-420 91-148 (167)
280 PF08631 SPO22: Meiosis protei 93.0 8.5 0.00019 36.6 23.2 65 428-493 122-192 (278)
281 COG4785 NlpI Lipoprotein NlpI, 92.7 5.4 0.00012 35.1 13.0 162 458-626 99-268 (297)
282 KOG4555 TPR repeat-containing 92.7 0.33 7.2E-06 38.3 5.4 57 569-625 51-107 (175)
283 PF07035 Mic1: Colon cancer-as 92.6 5.8 0.00013 33.8 14.4 131 244-382 14-146 (167)
284 PF07719 TPR_2: Tetratricopept 92.6 0.13 2.8E-06 30.1 2.5 31 596-626 2-32 (34)
285 PRK09687 putative lyase; Provi 92.5 10 0.00022 36.0 24.3 35 534-569 240-275 (280)
286 PF09613 HrpB1_HrpK: Bacterial 92.3 4.8 0.0001 33.8 12.0 65 504-571 21-87 (160)
287 PRK10941 hypothetical protein; 92.2 0.97 2.1E-05 42.2 8.9 82 564-668 184-265 (269)
288 KOG1585 Protein required for f 92.2 3.7 8.1E-05 36.8 11.7 87 195-282 153-250 (308)
289 PF13181 TPR_8: Tetratricopept 92.1 0.29 6.3E-06 28.6 3.7 31 563-593 3-33 (34)
290 TIGR02561 HrpB1_HrpK type III 92.1 0.9 2E-05 37.2 7.4 69 542-610 23-93 (153)
291 PF13176 TPR_7: Tetratricopept 92.1 0.27 5.9E-06 29.3 3.5 28 563-590 1-28 (36)
292 COG2976 Uncharacterized protei 92.0 7.6 0.00016 33.7 13.3 114 476-593 70-191 (207)
293 PF09613 HrpB1_HrpK: Bacterial 92.0 0.84 1.8E-05 38.1 7.3 74 539-612 20-95 (160)
294 PF04097 Nic96: Nup93/Nic96; 91.9 6 0.00013 42.5 15.6 86 232-322 266-355 (613)
295 KOG2066 Vacuolar assembly/sort 91.8 20 0.00044 38.2 25.4 101 167-271 363-467 (846)
296 PF04184 ST7: ST7 protein; In 91.7 3.6 7.7E-05 41.2 12.2 58 565-622 263-322 (539)
297 PF00515 TPR_1: Tetratricopept 91.7 0.19 4.2E-06 29.4 2.5 31 596-626 2-32 (34)
298 COG4649 Uncharacterized protei 91.5 4.3 9.3E-05 34.3 10.6 118 438-556 69-194 (221)
299 KOG1258 mRNA processing protei 91.3 20 0.00043 37.0 31.1 96 55-154 44-143 (577)
300 KOG1464 COP9 signalosome, subu 91.0 12 0.00027 34.1 16.2 238 358-601 67-343 (440)
301 PF04184 ST7: ST7 protein; In 90.6 21 0.00045 36.1 17.5 17 579-595 364-380 (539)
302 PF00637 Clathrin: Region in C 90.2 0.7 1.5E-05 38.7 5.6 52 231-282 14-65 (143)
303 PF13170 DUF4003: Protein of u 90.0 8.3 0.00018 36.8 13.0 100 443-545 119-233 (297)
304 PF13174 TPR_6: Tetratricopept 90.0 0.63 1.4E-05 26.8 3.7 25 599-623 4-28 (33)
305 KOG4234 TPR repeat-containing 89.9 4.2 9E-05 35.2 9.5 100 503-604 105-211 (271)
306 PF02259 FAT: FAT domain; Int 89.8 22 0.00048 35.2 19.6 61 426-486 145-212 (352)
307 PF00637 Clathrin: Region in C 89.7 0.31 6.8E-06 40.8 3.0 78 3-83 20-97 (143)
308 PF13174 TPR_6: Tetratricopept 89.6 0.35 7.7E-06 27.9 2.4 31 564-594 3-33 (33)
309 COG1747 Uncharacterized N-term 89.3 26 0.00057 35.4 18.5 177 388-571 62-249 (711)
310 PF10602 RPN7: 26S proteasome 89.2 9.3 0.0002 33.2 11.8 97 460-556 38-140 (177)
311 PF04097 Nic96: Nup93/Nic96; 89.0 37 0.00079 36.7 21.1 43 229-272 116-158 (613)
312 PF07721 TPR_4: Tetratricopept 88.8 0.52 1.1E-05 25.5 2.5 24 596-619 2-25 (26)
313 PF13181 TPR_8: Tetratricopept 88.8 0.7 1.5E-05 26.9 3.3 29 596-624 2-30 (34)
314 COG3629 DnrI DNA-binding trans 88.5 3.5 7.7E-05 38.4 9.0 74 429-502 155-236 (280)
315 PF06552 TOM20_plant: Plant sp 88.1 0.8 1.7E-05 38.9 4.2 59 560-626 68-138 (186)
316 COG2976 Uncharacterized protei 87.9 16 0.00035 31.8 11.8 110 511-625 70-189 (207)
317 COG3629 DnrI DNA-binding trans 87.7 2.3 5E-05 39.6 7.3 61 529-589 153-215 (280)
318 PF11207 DUF2989: Protein of u 87.6 4.1 8.8E-05 35.6 8.2 74 542-615 119-198 (203)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 86.8 4.2 9.1E-05 30.4 6.7 63 473-537 22-84 (103)
320 KOG4648 Uncharacterized conser 86.5 1.9 4.2E-05 40.4 6.1 93 465-562 104-199 (536)
321 COG1747 Uncharacterized N-term 86.5 40 0.00086 34.2 19.6 175 423-604 62-248 (711)
322 KOG1920 IkappaB kinase complex 86.4 65 0.0014 36.5 25.5 110 327-453 941-1052(1265)
323 PF10602 RPN7: 26S proteasome 86.1 6.2 0.00013 34.3 8.9 61 495-556 38-100 (177)
324 KOG1308 Hsp70-interacting prot 86.0 0.64 1.4E-05 43.6 2.8 89 541-629 126-216 (377)
325 KOG4642 Chaperone-dependent E3 86.0 1.9 4E-05 38.5 5.4 50 572-621 55-104 (284)
326 TIGR03504 FimV_Cterm FimV C-te 85.9 1.5 3.3E-05 27.5 3.6 27 599-625 3-29 (44)
327 PF13374 TPR_10: Tetratricopep 85.8 1.2 2.7E-05 27.3 3.4 29 596-624 3-31 (42)
328 PF13431 TPR_17: Tetratricopep 85.7 0.83 1.8E-05 26.7 2.3 32 13-45 2-33 (34)
329 PF02284 COX5A: Cytochrome c o 85.4 6.1 0.00013 30.0 7.0 61 475-537 27-87 (108)
330 PF13374 TPR_10: Tetratricopep 85.4 1.6 3.5E-05 26.7 3.8 28 563-590 4-31 (42)
331 KOG1586 Protein required for f 85.4 28 0.0006 31.4 15.1 92 535-626 119-226 (288)
332 COG4785 NlpI Lipoprotein NlpI, 85.3 8.5 0.00018 33.9 8.9 108 504-617 76-188 (297)
333 KOG0276 Vesicle coat complex C 84.9 18 0.00039 37.3 12.1 148 439-620 598-746 (794)
334 smart00028 TPR Tetratricopepti 84.5 2.2 4.7E-05 23.7 3.9 25 598-622 4-28 (34)
335 KOG4570 Uncharacterized conser 84.4 20 0.00044 33.7 11.3 53 237-289 113-165 (418)
336 COG4455 ImpE Protein of avirul 83.8 31 0.00068 30.7 11.6 124 460-594 3-138 (273)
337 KOG2066 Vacuolar assembly/sort 83.6 69 0.0015 34.5 27.7 100 32-137 363-467 (846)
338 PF14561 TPR_20: Tetratricopep 83.1 3 6.4E-05 31.4 4.8 41 584-624 11-51 (90)
339 KOG4570 Uncharacterized conser 82.7 13 0.00029 34.8 9.5 101 421-522 58-164 (418)
340 KOG0276 Vesicle coat complex C 82.4 19 0.00041 37.1 11.2 75 203-289 648-722 (794)
341 PF06552 TOM20_plant: Plant sp 82.3 6.1 0.00013 33.8 6.7 69 474-543 7-83 (186)
342 KOG0545 Aryl-hydrocarbon recep 82.1 11 0.00023 34.0 8.4 59 566-624 235-293 (329)
343 COG4455 ImpE Protein of avirul 82.1 5.5 0.00012 35.1 6.6 64 532-595 4-69 (273)
344 COG2909 MalT ATP-dependent tra 81.3 91 0.002 34.3 25.5 220 401-620 424-684 (894)
345 smart00028 TPR Tetratricopepti 81.0 2.6 5.6E-05 23.4 3.3 31 562-592 2-32 (34)
346 TIGR02561 HrpB1_HrpK type III 81.0 13 0.00029 30.7 8.0 109 492-622 6-120 (153)
347 KOG1498 26S proteasome regulat 80.7 60 0.0013 31.8 15.4 195 424-646 49-263 (439)
348 PF10579 Rapsyn_N: Rapsyn N-te 80.4 4.8 0.0001 28.9 4.7 47 505-551 18-65 (80)
349 KOG1586 Protein required for f 79.9 46 0.001 30.0 15.6 58 537-594 162-228 (288)
350 TIGR02508 type_III_yscG type I 79.7 24 0.00053 26.8 8.6 52 62-116 45-96 (115)
351 PF11207 DUF2989: Protein of u 79.3 16 0.00035 32.1 8.5 74 475-549 123-198 (203)
352 COG3947 Response regulator con 79.3 6.4 0.00014 36.4 6.3 61 563-623 281-341 (361)
353 PF10579 Rapsyn_N: Rapsyn N-te 79.1 5.4 0.00012 28.6 4.6 46 573-618 18-66 (80)
354 KOG4279 Serine/threonine prote 78.7 94 0.002 33.3 14.8 100 468-594 297-399 (1226)
355 PF02284 COX5A: Cytochrome c o 78.7 15 0.00032 28.0 6.9 47 106-154 28-74 (108)
356 PF14853 Fis1_TPR_C: Fis1 C-te 78.4 6 0.00013 26.1 4.4 32 566-597 6-37 (53)
357 PRK15180 Vi polysaccharide bio 78.3 31 0.00068 34.5 10.9 121 469-593 300-423 (831)
358 KOG4507 Uncharacterized conser 78.3 7.4 0.00016 39.7 6.9 98 504-604 618-719 (886)
359 KOG1550 Extracellular protein 78.0 1E+02 0.0022 32.9 19.3 249 367-626 260-540 (552)
360 KOG0890 Protein kinase of the 78.0 1.9E+02 0.0041 36.0 28.2 109 493-605 1670-1799(2382)
361 cd00923 Cyt_c_Oxidase_Va Cytoc 77.7 19 0.00041 27.2 7.2 61 240-301 23-83 (103)
362 KOG2063 Vacuolar assembly/sort 77.7 76 0.0017 35.3 14.7 56 28-83 310-373 (877)
363 PF14432 DYW_deaminase: DYW fa 77.4 2 4.4E-05 34.1 2.5 39 631-673 2-41 (116)
364 PF07163 Pex26: Pex26 protein; 77.0 25 0.00053 32.6 9.2 87 465-554 90-183 (309)
365 KOG1550 Extracellular protein 77.0 1E+02 0.0022 32.9 15.6 15 408-422 228-242 (552)
366 PRK11619 lytic murein transgly 76.4 1.2E+02 0.0026 33.0 39.1 446 127-616 36-497 (644)
367 PF04190 DUF410: Protein of un 75.4 73 0.0016 29.9 16.1 138 234-383 20-168 (260)
368 PF09986 DUF2225: Uncharacteri 74.5 15 0.00033 33.1 7.5 62 564-625 121-195 (214)
369 KOG4507 Uncharacterized conser 74.5 12 0.00025 38.4 7.2 135 490-627 568-708 (886)
370 PRK10941 hypothetical protein; 74.2 19 0.00041 33.8 8.2 66 532-597 184-251 (269)
371 KOG1464 COP9 signalosome, subu 74.1 73 0.0016 29.3 17.3 197 353-549 23-251 (440)
372 COG5159 RPN6 26S proteasome re 73.5 79 0.0017 29.5 11.7 48 362-410 9-63 (421)
373 KOG0376 Serine-threonine phosp 72.6 7.6 0.00016 38.7 5.4 87 537-623 12-100 (476)
374 PRK15180 Vi polysaccharide bio 72.4 31 0.00067 34.5 9.3 154 434-590 296-454 (831)
375 PF04910 Tcf25: Transcriptiona 72.3 1.1E+02 0.0023 30.5 14.1 57 567-623 109-167 (360)
376 smart00386 HAT HAT (Half-A-TPR 71.3 6.1 0.00013 22.3 3.0 30 575-604 1-30 (33)
377 PF12862 Apc5: Anaphase-promot 70.7 14 0.0003 28.0 5.5 54 571-624 8-70 (94)
378 PF13934 ELYS: Nuclear pore co 70.5 25 0.00053 32.1 8.0 85 27-114 78-166 (226)
379 PF09670 Cas_Cas02710: CRISPR- 70.3 68 0.0015 32.1 11.7 53 468-521 141-197 (379)
380 KOG3364 Membrane protein invol 69.8 28 0.0006 28.3 6.9 71 526-596 29-106 (149)
381 PRK12798 chemotaxis protein; R 69.1 1.3E+02 0.0028 30.1 24.6 180 440-622 125-322 (421)
382 KOG2062 26S proteasome regulat 69.0 1.7E+02 0.0037 31.5 34.4 62 128-189 177-239 (929)
383 PF00244 14-3-3: 14-3-3 protei 68.0 73 0.0016 29.4 10.5 162 464-626 7-200 (236)
384 PF13934 ELYS: Nuclear pore co 68.0 98 0.0021 28.3 13.1 71 499-573 114-184 (226)
385 TIGR02508 type_III_yscG type I 67.9 52 0.0011 25.1 8.9 60 434-496 46-105 (115)
386 PF08311 Mad3_BUB1_I: Mad3/BUB 67.4 29 0.00062 28.2 6.9 42 579-620 81-124 (126)
387 TIGR03504 FimV_Cterm FimV C-te 65.8 15 0.00033 23.0 3.9 24 464-487 5-28 (44)
388 KOG4077 Cytochrome c oxidase, 65.7 42 0.0009 26.8 7.0 60 476-537 67-126 (149)
389 PF13762 MNE1: Mitochondrial s 65.1 31 0.00068 28.6 6.7 81 58-140 41-130 (145)
390 KOG2297 Predicted translation 64.2 1.3E+02 0.0029 28.4 11.3 23 29-51 33-56 (412)
391 KOG0551 Hsp90 co-chaperone CNS 63.9 42 0.00092 32.0 8.0 93 530-622 82-180 (390)
392 KOG2581 26S proteasome regulat 63.9 1.3E+02 0.0029 29.7 11.3 64 530-593 210-279 (493)
393 COG0790 FOG: TPR repeat, SEL1 63.0 1.4E+02 0.0031 28.4 18.4 147 473-626 92-268 (292)
394 PF13762 MNE1: Mitochondrial s 62.8 48 0.001 27.5 7.4 53 221-273 76-129 (145)
395 PF07163 Pex26: Pex26 protein; 62.7 1.2E+02 0.0025 28.5 10.3 73 363-437 90-163 (309)
396 COG4976 Predicted methyltransf 62.6 15 0.00031 32.9 4.5 57 571-627 5-61 (287)
397 cd08819 CARD_MDA5_2 Caspase ac 61.4 65 0.0014 23.9 7.2 28 343-371 54-81 (88)
398 PRK13800 putative oxidoreducta 61.2 3E+02 0.0066 31.6 26.2 158 451-622 721-879 (897)
399 PF13170 DUF4003: Protein of u 60.9 1.6E+02 0.0035 28.3 19.3 146 474-621 78-243 (297)
400 PF07720 TPR_3: Tetratricopept 60.7 28 0.0006 20.7 4.2 17 567-583 7-23 (36)
401 KOG4642 Chaperone-dependent E3 60.2 1E+02 0.0022 28.1 9.2 82 506-590 23-107 (284)
402 PF10345 Cohesin_load: Cohesin 59.9 2.6E+02 0.0056 30.4 31.8 187 221-418 27-251 (608)
403 KOG3824 Huntingtin interacting 58.8 24 0.00052 33.0 5.4 55 541-595 128-184 (472)
404 PF14561 TPR_20: Tetratricopep 58.6 76 0.0016 23.8 8.3 63 558-620 19-84 (90)
405 KOG2422 Uncharacterized conser 58.4 1.6E+02 0.0034 30.8 11.3 160 469-631 249-451 (665)
406 cd00280 TRFH Telomeric Repeat 58.2 59 0.0013 28.1 7.2 35 569-604 119-153 (200)
407 PF11846 DUF3366: Domain of un 57.5 37 0.00079 30.1 6.6 30 526-555 141-170 (193)
408 PF11848 DUF3368: Domain of un 57.4 47 0.001 21.3 5.2 34 468-501 12-45 (48)
409 KOG0890 Protein kinase of the 55.1 5.4E+02 0.012 32.5 30.8 65 560-626 1669-1733(2382)
410 cd08819 CARD_MDA5_2 Caspase ac 55.0 69 0.0015 23.8 6.2 64 10-75 22-85 (88)
411 PF11846 DUF3366: Domain of un 53.4 47 0.001 29.4 6.6 36 557-592 140-175 (193)
412 KOG3807 Predicted membrane pro 53.1 1.8E+02 0.0038 27.9 10.0 19 579-597 380-398 (556)
413 PF10516 SHNi-TPR: SHNi-TPR; 52.8 29 0.00062 21.0 3.4 28 596-623 2-29 (38)
414 smart00777 Mad3_BUB1_I Mad3/BU 52.1 95 0.0021 25.1 7.3 40 580-619 82-123 (125)
415 COG4976 Predicted methyltransf 51.7 23 0.00049 31.7 4.0 54 541-594 7-62 (287)
416 COG2912 Uncharacterized conser 51.5 1.1E+02 0.0024 28.6 8.4 58 567-624 187-244 (269)
417 KOG4077 Cytochrome c oxidase, 50.5 72 0.0016 25.6 6.0 47 106-154 67-113 (149)
418 PF11768 DUF3312: Protein of u 49.7 1.7E+02 0.0038 30.4 10.2 24 431-454 412-435 (545)
419 KOG4521 Nuclear pore complex, 49.5 4.7E+02 0.01 30.3 14.3 18 436-453 929-946 (1480)
420 PF14689 SPOB_a: Sensor_kinase 49.1 32 0.00069 23.6 3.7 24 532-555 26-49 (62)
421 PF11817 Foie-gras_1: Foie gra 48.9 69 0.0015 29.8 7.1 24 533-556 182-205 (247)
422 cd00280 TRFH Telomeric Repeat 47.7 68 0.0015 27.8 6.0 22 168-189 119-140 (200)
423 PF12862 Apc5: Anaphase-promot 46.6 68 0.0015 24.3 5.6 21 570-590 50-70 (94)
424 PRK12798 chemotaxis protein; R 46.5 3.2E+02 0.007 27.5 20.4 176 36-214 92-279 (421)
425 PF14689 SPOB_a: Sensor_kinase 46.5 34 0.00073 23.5 3.5 46 474-521 6-51 (62)
426 smart00638 LPD_N Lipoprotein N 46.4 4.1E+02 0.0088 28.6 20.4 58 55-115 309-367 (574)
427 PF12069 DUF3549: Protein of u 46.4 2.9E+02 0.0063 26.9 12.2 87 433-522 172-259 (340)
428 COG4259 Uncharacterized protei 46.3 65 0.0014 24.5 5.0 41 581-621 57-98 (121)
429 PF14863 Alkyl_sulf_dimr: Alky 46.2 69 0.0015 26.5 5.8 62 546-610 58-119 (141)
430 KOG1839 Uncharacterized protei 46.1 1.7E+02 0.0037 33.9 10.4 120 502-623 941-1085(1236)
431 COG3947 Response regulator con 46.1 84 0.0018 29.5 6.7 57 532-588 282-340 (361)
432 PF11848 DUF3368: Domain of un 46.1 79 0.0017 20.3 5.0 33 235-267 13-45 (48)
433 KOG3824 Huntingtin interacting 45.2 30 0.00064 32.4 3.9 51 503-556 126-177 (472)
434 PHA02875 ankyrin repeat protei 45.0 3.5E+02 0.0076 27.5 17.4 14 203-216 10-23 (413)
435 PF08424 NRDE-2: NRDE-2, neces 44.9 3.1E+02 0.0066 26.8 12.3 113 474-590 47-183 (321)
436 cd02679 MIT_spastin MIT: domai 44.5 43 0.00094 24.3 3.9 49 572-623 19-67 (79)
437 TIGR02710 CRISPR-associated pr 44.3 3.2E+02 0.007 27.3 10.9 54 465-518 137-196 (380)
438 PF12968 DUF3856: Domain of Un 44.2 1.1E+02 0.0025 24.3 6.2 23 530-552 56-78 (144)
439 COG0735 Fur Fe2+/Zn2+ uptake r 43.4 1.5E+02 0.0032 24.8 7.5 64 245-309 7-70 (145)
440 KOG4814 Uncharacterized conser 42.8 79 0.0017 33.2 6.7 58 566-623 399-456 (872)
441 COG5191 Uncharacterized conser 42.7 72 0.0016 30.1 5.9 81 524-604 102-185 (435)
442 PF09477 Type_III_YscG: Bacter 42.2 1.6E+02 0.0036 22.9 7.8 92 6-100 22-113 (116)
443 PF10366 Vps39_1: Vacuolar sor 42.0 1.7E+02 0.0037 22.9 7.6 27 460-486 41-67 (108)
444 PF04781 DUF627: Protein of un 41.4 1.3E+02 0.0029 23.6 6.3 26 502-527 5-30 (111)
445 PF10255 Paf67: RNA polymerase 41.3 1.7E+02 0.0036 29.5 8.6 28 594-621 163-190 (404)
446 cd08326 CARD_CASP9 Caspase act 40.9 95 0.002 23.0 5.3 35 339-373 44-78 (84)
447 KOG4567 GTPase-activating prot 40.8 3.3E+02 0.0072 26.0 9.8 73 478-556 263-345 (370)
448 KOG0376 Serine-threonine phosp 40.6 35 0.00076 34.3 3.9 61 568-628 11-71 (476)
449 COG5191 Uncharacterized conser 40.5 53 0.0012 31.0 4.7 78 490-569 104-184 (435)
450 PF10366 Vps39_1: Vacuolar sor 40.4 1.8E+02 0.0039 22.8 7.8 40 207-252 28-67 (108)
451 PRK10564 maltose regulon perip 39.6 57 0.0012 30.8 4.8 36 227-262 260-295 (303)
452 PF11838 ERAP1_C: ERAP1-like C 39.5 3.6E+02 0.0079 26.1 16.3 191 63-284 45-262 (324)
453 COG4259 Uncharacterized protei 38.7 1.8E+02 0.0038 22.3 6.2 21 534-554 77-97 (121)
454 PF13929 mRNA_stabil: mRNA sta 38.0 3.6E+02 0.0078 25.6 21.3 117 472-588 142-265 (292)
455 KOG2422 Uncharacterized conser 37.8 5.1E+02 0.011 27.3 13.4 154 465-622 349-514 (665)
456 TIGR02270 conserved hypothetic 36.5 4.8E+02 0.01 26.6 23.0 14 226-239 102-115 (410)
457 cd08787 CARD_NOD2_1_CARD15 Cas 36.3 66 0.0014 23.2 3.5 69 29-97 6-75 (87)
458 COG5108 RPO41 Mitochondrial DN 36.2 2.2E+02 0.0048 30.3 8.6 21 299-319 33-53 (1117)
459 PHA02875 ankyrin repeat protei 36.1 4.8E+02 0.01 26.5 19.3 38 147-184 117-156 (413)
460 KOG0292 Vesicle coat complex C 36.1 56 0.0012 35.7 4.6 44 541-587 655-698 (1202)
461 PRK10564 maltose regulon perip 35.8 75 0.0016 30.1 5.0 41 460-500 259-299 (303)
462 PRK13342 recombination factor 35.8 4.9E+02 0.011 26.5 18.1 46 359-405 230-278 (413)
463 PF03745 DUF309: Domain of unk 35.8 55 0.0012 22.5 3.2 43 37-79 11-62 (62)
464 PF14669 Asp_Glu_race_2: Putat 35.7 3.1E+02 0.0067 24.2 12.6 175 85-284 6-206 (233)
465 PF08311 Mad3_BUB1_I: Mad3/BUB 35.7 2.4E+02 0.0052 22.9 9.8 43 511-554 81-124 (126)
466 KOG2581 26S proteasome regulat 35.1 2.4E+02 0.0052 28.1 8.2 65 560-626 208-278 (493)
467 KOG2758 Translation initiation 33.5 4.4E+02 0.0096 25.3 14.3 168 412-590 20-196 (432)
468 PRK09462 fur ferric uptake reg 33.0 2.9E+02 0.0062 23.1 7.8 61 249-310 7-68 (148)
469 COG0735 Fur Fe2+/Zn2+ uptake r 32.7 2.2E+02 0.0048 23.8 7.0 63 210-273 7-69 (145)
470 PF07575 Nucleopor_Nup85: Nup8 32.5 6.6E+02 0.014 27.0 19.8 26 194-219 150-175 (566)
471 PRK13800 putative oxidoreducta 32.2 8.4E+02 0.018 28.1 26.7 255 315-589 625-880 (897)
472 KOG0991 Replication factor C, 32.1 4E+02 0.0087 24.4 9.3 95 402-499 169-279 (333)
473 PF04090 RNA_pol_I_TF: RNA pol 32.0 1.3E+02 0.0027 26.8 5.5 90 562-651 42-132 (199)
474 PRK09857 putative transposase; 31.5 2.5E+02 0.0055 26.9 8.0 63 566-628 211-273 (292)
475 KOG4567 GTPase-activating prot 31.5 3.9E+02 0.0084 25.6 8.6 76 10-86 263-348 (370)
476 PF15015 NYD-SP12_N: Spermatog 31.4 3.6E+02 0.0078 27.1 8.7 23 534-556 233-255 (569)
477 PRK11639 zinc uptake transcrip 31.3 1.9E+02 0.004 25.0 6.5 38 273-310 39-76 (169)
478 KOG0403 Neoplastic transformat 31.2 5.8E+02 0.012 25.9 20.1 58 431-488 513-573 (645)
479 cd08326 CARD_CASP9 Caspase act 31.2 72 0.0016 23.6 3.4 34 68-101 42-75 (84)
480 KOG2063 Vacuolar assembly/sort 31.1 8.3E+02 0.018 27.7 20.8 25 358-382 506-530 (877)
481 KOG0530 Protein farnesyltransf 31.1 4.5E+02 0.0097 24.6 15.3 90 545-634 94-186 (318)
482 PF12753 Nro1: Nuclear pore co 30.9 73 0.0016 31.4 4.2 51 577-629 334-396 (404)
483 KOG2034 Vacuolar sorting prote 30.5 8.2E+02 0.018 27.5 24.1 89 300-394 364-452 (911)
484 KOG0292 Vesicle coat complex C 30.4 4.1E+02 0.0088 29.6 9.6 161 161-353 621-781 (1202)
485 cd08332 CARD_CASP2 Caspase act 30.2 1.4E+02 0.0029 22.5 4.8 33 339-371 48-80 (90)
486 PF09454 Vps23_core: Vps23 cor 30.1 1.1E+02 0.0025 21.2 4.0 49 456-505 6-54 (65)
487 PF08424 NRDE-2: NRDE-2, neces 30.0 5.3E+02 0.011 25.1 14.0 113 547-674 49-170 (321)
488 PF11817 Foie-gras_1: Foie gra 30.0 1.5E+02 0.0033 27.5 6.2 53 499-551 184-240 (247)
489 PF04910 Tcf25: Transcriptiona 29.8 5.7E+02 0.012 25.5 17.6 173 439-623 22-221 (360)
490 PF03745 DUF309: Domain of unk 29.8 1.9E+02 0.0041 19.9 5.1 48 234-281 9-61 (62)
491 PRK11639 zinc uptake transcrip 29.7 2.4E+02 0.0051 24.4 6.9 60 484-545 17-76 (169)
492 PF11663 Toxin_YhaV: Toxin wit 29.4 61 0.0013 26.4 2.9 34 468-503 105-138 (140)
493 KOG2471 TPR repeat-containing 29.3 6.5E+02 0.014 26.0 10.6 61 568-631 213-273 (696)
494 PF12926 MOZART2: Mitotic-spin 28.9 2.5E+02 0.0053 20.9 7.1 63 389-453 7-69 (88)
495 KOG2908 26S proteasome regulat 28.9 5.4E+02 0.012 25.1 9.2 57 499-555 81-141 (380)
496 KOG1839 Uncharacterized protei 28.2 4E+02 0.0088 31.1 9.7 155 467-621 941-1125(1236)
497 KOG1308 Hsp70-interacting prot 27.4 20 0.00043 34.2 -0.1 67 571-637 124-190 (377)
498 PF11663 Toxin_YhaV: Toxin wit 27.4 47 0.001 27.0 2.0 33 234-268 105-137 (140)
499 cd07153 Fur_like Ferric uptake 27.1 1.7E+02 0.0036 23.1 5.3 45 230-274 6-50 (116)
500 PF06957 COPI_C: Coatomer (COP 27.1 2.8E+02 0.0062 28.1 7.7 47 563-623 302-348 (422)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-94 Score=792.15 Aligned_cols=666 Identities=28% Similarity=0.462 Sum_probs=612.9
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC----CCcchHHHHHHHHHhcCChHHHHH
Q 005802 2 RSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE----RNVFSWNTIISACIKSHDLKQARS 77 (676)
Q Consensus 2 r~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~ 77 (676)
+.|++++|.++|+.|.+.|++|+..+|..++.+|.+.+.++.+.+++..+.+ +++..+|+++..|++.|+++.|.+
T Consensus 63 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~ 142 (857)
T PLN03077 63 SHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWY 142 (857)
T ss_pred hCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHH
Confidence 6799999999999999999999999999999999999999999999987653 788899999999999999999999
Q ss_pred HhccCCCCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCC
Q 005802 78 LFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSND 157 (676)
Q Consensus 78 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (676)
+|++|++||..+||++|.+|++.|+++ +|+++|++|.. .|+.||..||+.++++|+..+++..+.+++..+.+.|+.
T Consensus 143 ~f~~m~~~d~~~~n~li~~~~~~g~~~-~A~~~f~~M~~--~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~ 219 (857)
T PLN03077 143 VFGKMPERDLFSWNVLVGGYAKAGYFD-EALCLYHRMLW--AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE 219 (857)
T ss_pred HHhcCCCCCeeEHHHHHHHHHhCCCHH-HHHHHHHHHHH--cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCC
Confidence 999999999999999999999999999 99999999999 899999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCC---CCCeeeHHHHHHHH
Q 005802 158 ASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPE---LNDAVSWNTLISGY 234 (676)
Q Consensus 158 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~ 234 (676)
|+..+|++|+.+|++.|++++|.++|++|.. ++..+|+++|.+|++.|+.++|+++|.+|.. .||..+|+.+|.++
T Consensus 220 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPR-RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred cccchHhHHHHHHhcCCCHHHHHHHHhcCCC-CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 9999999999999999999999999999984 6899999999999999999999999988854 67777777777777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhC-------------------------------CCChHHHHHHHH
Q 005802 235 VQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCG-------------------------------LRNVKCAKEIHS 283 (676)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------------------------------~~~~~~a~~~~~ 283 (676)
++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++ .|++++|.++|+
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 7666666666666666666666666655555555554 555555555566
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcC----CCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhH
Q 005802 284 WVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKG----VRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVW 359 (676)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (676)
+|.+.|+.||..+|+.++.+|++.|+++.|.+++..+. .++..++++|+.+|++.|++++|.++|++|.++|..+|
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~ 458 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISW 458 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeH
Confidence 66666666666666666666666666666666655443 25677888999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 005802 360 TALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSK 439 (676)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (676)
|++|.+|++.|+.++|+.+|++| .. ++.||..||+.++.+|++.|.++.+.+++..+.+.|+.++..++++|+++|++
T Consensus 459 ~~mi~~~~~~g~~~eA~~lf~~m-~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 459 TSIIAGLRLNNRCFEALIFFRQM-LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH-Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence 99999999999999999999999 43 69999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHc
Q 005802 440 CGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSM 519 (676)
Q Consensus 440 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 519 (676)
+|++++|.++|+.+ .+|+.+||++|.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|
T Consensus 537 ~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 537 CGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred cCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 99999999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHH
Q 005802 520 TADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 520 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 599 (676)
.+++|+.|+..+|++++++|++.|++++|.+++++|+.+|+..+|.+++.+|..+|+.+.++.+.+++.++.|+++..|.
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ 695 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI 695 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Confidence 87779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005802 600 QLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYEIAGA 674 (676)
Q Consensus 600 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (676)
.|+++|...|+|++|.++.+.|++.|++++||+||+++++++|.|.+||++||+..+||..|+.|..+|++.||+
T Consensus 696 ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~ 770 (857)
T PLN03077 696 LLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLA 770 (857)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.7e-77 Score=641.91 Aligned_cols=524 Identities=29% Similarity=0.507 Sum_probs=498.7
Q ss_pred CCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchh
Q 005802 84 HKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAV 163 (676)
Q Consensus 84 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (676)
.++..+|+.+|.++.+.|++. +|+++|+.|... .+..||..+|+.++.+|.+.++.+.+.+++..|.+.|+.||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~-~Al~~f~~m~~~-~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~--- 158 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHR-EALELFEILEAG-CPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ--- 158 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHH-HHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcch---
Confidence 456779999999999999999 999999999872 347899999999999999999999999999999999765554
Q ss_pred hHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHH
Q 005802 164 SSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEG 243 (676)
Q Consensus 164 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 243 (676)
.+++.++++|++.|++++|.++|++|+ .||..+||.+|.+|++.|++++|
T Consensus 159 -----------------------------~~~n~Li~~y~k~g~~~~A~~lf~~m~-~~~~~t~n~li~~~~~~g~~~~A 208 (697)
T PLN03081 159 -----------------------------YMMNRVLLMHVKCGMLIDARRLFDEMP-ERNLASWGTIIGGLVDAGNYREA 208 (697)
T ss_pred -----------------------------HHHHHHHHHHhcCCCHHHHHHHHhcCC-CCCeeeHHHHHHHHHHCcCHHHH
Confidence 455566666666666666677777776 78999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCC
Q 005802 244 LKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVR 323 (676)
Q Consensus 244 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 323 (676)
+++|++|.+.|+.||..||..++.+|+..|..+.+.+++..+.+.|+.||..+++.|+++|+++|++++|.
T Consensus 209 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~--------- 279 (697)
T PLN03081 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR--------- 279 (697)
T ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH---------
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHH
Q 005802 324 NSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACA 403 (676)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 403 (676)
++|++|.++|+.+||+++.+|++.|++++|+++|++| ...|+.||..||+.++.+|+
T Consensus 280 ----------------------~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M-~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 280 ----------------------CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM-RDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred ----------------------HHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 88999999999999999999
Q ss_pred hhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHH
Q 005802 404 LQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEE 483 (676)
Q Consensus 404 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 483 (676)
+.|.++.|.+++..|.+.|++|+..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|+++|+.++|+++|++
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHH
Q 005802 484 MLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVI 563 (676)
Q Consensus 484 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 563 (676)
|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|++++++|++.|++++|.+++++|+..|+..+
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~ 496 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNM 496 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHH
Confidence 99999999999999999999999999999999999988789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEE
Q 005802 564 LGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHI 643 (676)
Q Consensus 564 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (676)
|++++.+|..+|+++.|..+++++.+..|++...|..|+++|.+.|+|++|.++++.|++.|+++.||+||+++.+++|.
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~ 576 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHS 576 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005802 644 FTVGDVSHPKTNAIYSVLAIFTGELYEIAGA 674 (676)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (676)
|++||++||+..+|+..+.++..+|++.||+
T Consensus 577 f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~ 607 (697)
T PLN03081 577 FFSGDRLHPQSREIYQKLDELMKEISEYGYV 607 (697)
T ss_pred EccCCCCCccHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999996
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-72 Score=620.98 Aligned_cols=584 Identities=18% Similarity=0.242 Sum_probs=551.6
Q ss_pred CCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC----CCcchHHHHHHHHHhcCChHHHHHHhccCC----CCCcccHH
Q 005802 20 GLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE----RNVFSWNTIISACIKSHDLKQARSLFDSSP----HKDLVTYN 91 (676)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 91 (676)
...|+..+++.++.+|++.|++++|..+|+.|.+ |+..+|..++..+.+.+.++.+..++..+. .++...+|
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 3467888999999999999999999999999976 788999999999999999999999997654 57888999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhh
Q 005802 92 SMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYS 171 (676)
Q Consensus 92 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 171 (676)
.|+..|++.|+.. .|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|+.|...|+.||..||++++.+++
T Consensus 126 ~li~~~~~~g~~~-~A~~~f~~m~~------~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 126 AMLSMFVRFGELV-HAWYVFGKMPE------RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred HHHHHHHhCCChH-HHHHHHhcCCC------CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence 9999999999999 99999999963 7899999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHhhhhcCC---CCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHH
Q 005802 172 KCRCYEEACRVFEGCTE---EVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFV 248 (676)
Q Consensus 172 ~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 248 (676)
..+++..+.+++..+.. .|+..++++++.+|++.|++++|.++|++|+ .||..+||++|.+|++.|++++|+++|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-CCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999987765 6899999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhH
Q 005802 249 RMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSI 328 (676)
Q Consensus 249 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 328 (676)
+|...|+.||..||+.++.+|++.|+++.+.+++..+.+.|+.||..+|+.++.+|+++|+++.|.++|+.+..||..+|
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~ 357 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSW 357 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccC----CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHh
Q 005802 329 SSMIVGYSLQGNMEEARRHFDSLT----EKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACAL 404 (676)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 404 (676)
++++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+.+.|.+++..| ...|+.|+..+++.++..|++
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~-~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA-ERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH-HHhCCCcchHHHHHHHHHHHH
Confidence 999999999999999999999985 388999999999999999999999999999 889999999999999999999
Q ss_pred hcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHH
Q 005802 405 QAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLF 481 (676)
Q Consensus 405 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 481 (676)
.|++++|.++|+.|. .+|..+|+++|.+|++.|+.++|..+|++|. +||..+|+.++.+|++.|..+.+.+++
T Consensus 437 ~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 437 CKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred cCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 999999999999885 4678899999999999999999999999986 689999999999999999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CC
Q 005802 482 EEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP---TE 558 (676)
Q Consensus 482 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~ 558 (676)
..|.+.|+.||..+++.|+.+|++.|++++|.++|+.+ .||..+|++++.+|++.|+.++|+++|++|. ..
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999877 4799999999999999999999999999987 68
Q ss_pred CcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc--cCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 559 EDAVILGSFLNVCRLNRNAELAGEAEEKLLRL--EGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 559 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
||..+|..++.+|.+.|++++|.++|+.|.+. ..++...|..++.+|.+.|++++|.+++++|.
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999854 23346789999999999999999999999984
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.2e-67 Score=562.76 Aligned_cols=523 Identities=15% Similarity=0.216 Sum_probs=476.4
Q ss_pred hCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCCC-----CcchHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHH
Q 005802 19 AGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPER-----NVFSWNTIISACIKSHDLKQARSLFDSSPHKDLVTYNSM 93 (676)
Q Consensus 19 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 93 (676)
....++...|..++..|++.|++++|.++|++|.++ +...++.++..|.+.|.+++|..+|+.|..||..+|+.+
T Consensus 364 ~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~L 443 (1060)
T PLN03218 364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNML 443 (1060)
T ss_pred cCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 345677888999999999999999999999999874 445677788889999999999999999999999999999
Q ss_pred HHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhc
Q 005802 94 LCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKC 173 (676)
Q Consensus 94 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 173 (676)
|.+|++.|+.+ .|.++|++|.+ .|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.
T Consensus 444 L~a~~k~g~~e-~A~~lf~~M~~--~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 444 MSVCASSQDID-GALRVLRLVQE--AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHhCcCHH-HHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999 99999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhhhcCC---CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC-----CCCeeeHHHHHHHHHhcCChhHHHH
Q 005802 174 RCYEEACRVFEGCTE---EVNLISKNAMVAACCREGEMEMALKTFWRQPE-----LNDAVSWNTLISGYVQNGDAEEGLK 245 (676)
Q Consensus 174 g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~ 245 (676)
|++++|.++|+.|.. .|+..+|+.+|.+|++.|++++|.++|++|.. .||..+|+++|.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999976 68999999999999999999999999998852 6899999999999999999999999
Q ss_pred HHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC---
Q 005802 246 LFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV--- 322 (676)
Q Consensus 246 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--- 322 (676)
+|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..+..
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred -CCchhHHHHHHHHHhcCCHHHHHHHHhccC----CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHH
Q 005802 323 -RNSFSISSMIVGYSLQGNMEEARRHFDSLT----EKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVI 397 (676)
Q Consensus 323 -~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 397 (676)
|+..+|+++|.+|++.|++++|.++|++|. .||..+||+||.+|++.|++++|.++|++| ...|+.||..||+.
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM-~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM-KRLGLCPNTITYSI 759 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHcCCCCCHHHHHH
Confidence 789999999999999999999999999995 589999999999999999999999999999 88999999999999
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHH
Q 005802 398 LLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKA 477 (676)
Q Consensus 398 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 477 (676)
++.+|++.|+++.|..++..|.+.|+.||..+|++++.+|.+ .+++|..+.+.+...+. .......+..+.|
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~------g~~~~~n~w~~~A 831 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDS------GRPQIENKWTSWA 831 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhc------cccccccchHHHH
Confidence 999999999999999999999999999999999999976542 45555554433321110 0011112334679
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 478 ILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 478 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
+.+|++|++.|+.||..||+.++.+++..+..+.+..+++.|... +..|+..+|++|++++.+. .++|..++++|.
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 999999999999999999999999888999999999999998665 7888899999999998532 478999999997
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-63 Score=535.53 Aligned_cols=504 Identities=17% Similarity=0.216 Sum_probs=458.0
Q ss_pred CCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCC-CCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHH
Q 005802 121 IRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSND-ASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMV 199 (676)
Q Consensus 121 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 199 (676)
..++...|..++..+.+.|+++.|.++|+.|.+.|+. ++..+++.++..|.+.|.+++|.++++.|.. |+..+|+.++
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL 444 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLM 444 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 4557778888888999999999999999999998864 5556778888999999999999999998886 8999999999
Q ss_pred HHHHhcCChhHHHHHHhhCCC---CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChH
Q 005802 200 AACCREGEMEMALKTFWRQPE---LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVK 276 (676)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 276 (676)
.+|++.|+++.|.++|+.|.. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 999999999999999988864 68999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcC------CCCchhHHHHHHHHHhcCCHHHHHHHHhc
Q 005802 277 CAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKG------VRNSFSISSMIVGYSLQGNMEEARRHFDS 350 (676)
Q Consensus 277 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (676)
+|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.+++..|. .||..+|++++.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998874 47889999999999999999999999999
Q ss_pred cCC----CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCC
Q 005802 351 LTE----KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMD 426 (676)
Q Consensus 351 ~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 426 (676)
|.+ |+..+|+.+|.+|++.|++++|.++|++| ...|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM-~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 976 56789999999999999999999999999 8899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFI----ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSA 502 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 502 (676)
..+|++||.+|+++|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|...|+.||..||+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999994 689999999999999999999999999999999999999999999999
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh----c-------------------CCHHHHHHHHHhCC---
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR----A-------------------NQLEKAIEFMKSIP--- 556 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~--- 556 (676)
|++.|++++|.++++.|.+. |+.||..+|++++..|.+ + +..++|..+|++|.
T Consensus 764 ~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 99999999999999999877 999999999999876432 2 23467999999998
Q ss_pred CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-cCCCCccHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCcccC
Q 005802 557 TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL-EGNNKARYVQLANVYAAEGNW-AEMGRIRKQMRGMKGNRFA 630 (676)
Q Consensus 557 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~ 630 (676)
..|+..+|..++.++...+..+.+..+++.+... .+.+..+|..|++.+ |++ ++|..++++|.+.|+.+..
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCc
Confidence 7899999999998888888899998888877644 566778899999987 443 6899999999999986544
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.3e-63 Score=530.32 Aligned_cols=456 Identities=21% Similarity=0.364 Sum_probs=415.1
Q ss_pred CCCChHHHHHHHHHHHHhC-CCCCcccHHHHHHHHHhCCCchHHHHHhccCCC----CCcchHHHHHHHHHhcCChHHHH
Q 005802 2 RSLNLKEALICHVQAIKAG-LTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE----RNVFSWNTIISACIKSHDLKQAR 76 (676)
Q Consensus 2 r~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~ 76 (676)
+.|++++|+++|+.|...+ +.|+..+|+.++.+|++.++++.+.+++..|.+ ||+.+||.++.+|++.|+++.|.
T Consensus 99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence 5688999999999998764 778999999999999999999999999988863 88899999999999999999999
Q ss_pred HHhccCCCCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcC
Q 005802 77 SLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSN 156 (676)
Q Consensus 77 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 156 (676)
++|++|++||..+||+++.+|++.|+.+ +|+++|++|.+ .|+.||..+|+.++.+|++.|..+.+.+++..+.+.|.
T Consensus 179 ~lf~~m~~~~~~t~n~li~~~~~~g~~~-~A~~lf~~M~~--~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~ 255 (697)
T PLN03081 179 RLFDEMPERNLASWGTIIGGLVDAGNYR-EAFALFREMWE--DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255 (697)
T ss_pred HHHhcCCCCCeeeHHHHHHHHHHCcCHH-HHHHHHHHHHH--hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999 99999999998 88999999999999999999999999999999999876
Q ss_pred CCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHh
Q 005802 157 DASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQ 236 (676)
Q Consensus 157 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~ 236 (676)
.||..+ +++|+++|++.|++++|.++|++|+ .+|+.+||.+|.+|++
T Consensus 256 ~~d~~~--------------------------------~n~Li~~y~k~g~~~~A~~vf~~m~-~~~~vt~n~li~~y~~ 302 (697)
T PLN03081 256 VGDTFV--------------------------------SCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYAL 302 (697)
T ss_pred Ccccee--------------------------------HHHHHHHHHHCCCHHHHHHHHHhCC-CCChhHHHHHHHHHHh
Confidence 665554 5555555555555555566666666 6799999999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 005802 237 NGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESM 316 (676)
Q Consensus 237 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 316 (676)
.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+++.|+++|+++|+++.|.
T Consensus 303 ~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~-- 380 (697)
T PLN03081 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR-- 380 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHH
Q 005802 317 LLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILV 396 (676)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 396 (676)
++|++|.++|..+||+||.+|++.|+.++|+++|++| ...|+.||..||+
T Consensus 381 -----------------------------~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M-~~~g~~Pd~~T~~ 430 (697)
T PLN03081 381 -----------------------------NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM-IAEGVAPNHVTFL 430 (697)
T ss_pred -----------------------------HHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCCHHHHH
Confidence 9999999999999999999999999999999999999 8899999999999
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC-CCCcchHHHHHHHHHHcCCh
Q 005802 397 ILLGACALQAALHPGKEIHAYILR-MGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI-ERDLVLYNVMIACYAHHGHE 474 (676)
Q Consensus 397 ~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 474 (676)
.++.+|++.|.+++|..+|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++++ +|+..+|++|+.+|..+|++
T Consensus 431 ~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~ 510 (697)
T PLN03081 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNL 510 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999986 6999999999999999999999999999999997 78999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC
Q 005802 475 EKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE 528 (676)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 528 (676)
+.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.++ |+.+.
T Consensus 511 ~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k~ 562 (697)
T PLN03081 511 ELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSMH 562 (697)
T ss_pred HHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCccC
Confidence 999999999975 5564 679999999999999999999999999877 77543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.4e-36 Score=342.66 Aligned_cols=574 Identities=12% Similarity=0.042 Sum_probs=282.3
Q ss_pred HHHhCCCchHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhcCCChhHH
Q 005802 34 IYSKHNLLRESRKLFDEMPE---RNVFSWNTIISACIKSHDLKQARSLFDSSPH---KDLVTYNSMLCGYINAEGYEADA 107 (676)
Q Consensus 34 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~a 107 (676)
.+...|++++|...|+++.+ .+...+..+...+.+.|++++|...++.+.. .+...+..+...+.+.|+++ +|
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE-KA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHH-HH
Confidence 33344444444444444332 1223334444444445555555554444331 22334444444555555555 55
Q ss_pred HHHHHHhHhccCCCCC-ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhc
Q 005802 108 LKLFIEMQSADEHIRM-DEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGC 186 (676)
Q Consensus 108 ~~~~~~m~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 186 (676)
.+.|+++.+ ..| +...+..+...+...|+.+.|...++.+.+..... ......++..+.+.|++++|..+++.+
T Consensus 383 ~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 383 AEYLAKATE----LDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL-GRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHh----cCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 555555443 122 22333444444445555555555555544432111 122334444555555555555555544
Q ss_pred CC--CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHH
Q 005802 187 TE--EVNLISKNAMVAACCREGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTF 262 (676)
Q Consensus 187 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 262 (676)
.. +.+..++..+...+...|++++|.+.|++... +.+...+..+...+...|++++|...|+.+...+ +.+..++
T Consensus 458 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 536 (899)
T TIGR02917 458 EKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAI 536 (899)
T ss_pred HHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHH
Confidence 33 22344455555555555555555555544321 2233344444455555555555555555554432 1233444
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCchhHHHHHHHHHhcC
Q 005802 263 ASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV---RNSFSISSMIVGYSLQG 339 (676)
Q Consensus 263 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~ 339 (676)
..+...+...|+.++|...++.+.+.+ +.+...+..+...|.+.|+++.|...++.+.. .+...|..+...+...|
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 455555555555555555555554443 22334444555555555555555555554432 23344555555555555
Q ss_pred CHHHHHHHHhccCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHH
Q 005802 340 NMEEARRHFDSLTE---KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHA 416 (676)
Q Consensus 340 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 416 (676)
++++|...|+.+.+ .+...+..+...+.+.|++++|...|++++. ..+.+..++..+...+...|++++|..+++
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE--LKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555432 1333455555555555555555555555421 122234445555555555555555555555
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh
Q 005802 417 YILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI--ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV 494 (676)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 494 (676)
.+.+.. +.+...+..+...+...|++++|...|+.+. .|+..++..++.++.+.|++++|.+.++++.+.. +.+..
T Consensus 694 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~ 771 (899)
T TIGR02917 694 SLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAV 771 (899)
T ss_pred HHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 555443 3344445555555555555555555555543 2333444455555555555555555555555532 22344
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHH
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCR 572 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 572 (676)
.+..+...|...|++++|..+|+++.+. .+++...+..+...+...|+ ++|+++++++. .+.++..+..+..++.
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 5555555555555555555555555432 12235555555555555555 55555555544 2334445555555555
Q ss_pred HhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 573 LNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 573 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
..|++++|...++++++..|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 849 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55566666666666665555555555555666666666666665555553
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-35 Score=335.95 Aligned_cols=610 Identities=14% Similarity=0.074 Sum_probs=434.1
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC--C-CcchHHHHHHHHHhcCChHHHHHH
Q 005802 2 RSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE--R-NVFSWNTIISACIKSHDLKQARSL 78 (676)
Q Consensus 2 r~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~ 78 (676)
+.|++++|.+.|+.+.+.. +.++.++..++..+...|++++|...++.+.+ | +...+......+.+.|++++|...
T Consensus 205 ~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 283 (899)
T TIGR02917 205 SLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARET 283 (899)
T ss_pred hcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHH
Confidence 4678888888888887765 45667777777777778888888777776643 2 112222222233344555555555
Q ss_pred hccCCC------------------------------------C-CcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCC
Q 005802 79 FDSSPH------------------------------------K-DLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHI 121 (676)
Q Consensus 79 ~~~~~~------------------------------------~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~ 121 (676)
|+.+.+ | +...+..+...+.+.|+.. +|...++.+.+ . .
T Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~--~-~ 359 (899)
T TIGR02917 284 LQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVD-EAIATLSPALG--L-D 359 (899)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH-HHHHHHHHHHh--c-C
Confidence 544321 1 2333444555555556665 66666665553 1 1
Q ss_pred CCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCC--CCchhhHHHHH
Q 005802 122 RMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE--EVNLISKNAMV 199 (676)
Q Consensus 122 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~ 199 (676)
..+...+..+...+...|+++.|.++++.+.+... .+...+..+...+...|++++|.+.++.... +........++
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 438 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLI 438 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHH
Confidence 22444555556666666666666666666655421 1223455555666666666666666655443 12233445556
Q ss_pred HHHHhcCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHH
Q 005802 200 AACCREGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKC 277 (676)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 277 (676)
..+.+.|++++|..+++.+.. +++..+|+.+...+...|++++|...|+++.+.. +.+...+..+...+...|++++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 666777777777777766543 3355667777777777888888888887777632 2234456666677777888888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhccCC-
Q 005802 278 AKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV---RNSFSISSMIVGYSLQGNMEEARRHFDSLTE- 353 (676)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 353 (676)
|...++.+.+.+ +.+..++..+...+.+.|+.++|...+.+... .+...+..+...+...|++++|..+++.+.+
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 888888777664 34566777777888888888888887776643 2445666777888888888888888887764
Q ss_pred --CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHH
Q 005802 354 --KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLIS 431 (676)
Q Consensus 354 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 431 (676)
.+...|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|..+++.+.+.. +.+...+.
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 345678888888888888888888888874322 3355667777778888888888888888887754 45577788
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCc
Q 005802 432 TLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGS 508 (676)
Q Consensus 432 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 508 (676)
.++..+...|++++|.++++.+.. .+...+..+...+...|++++|.+.|+++... .|+..++..+..++...|+
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCC
Confidence 888888888888888888888763 35567777888888999999999999998885 4555777788888999999
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 005802 509 VEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEK 586 (676)
Q Consensus 509 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 586 (676)
+++|.+.++.+... .+.+...+..+...|.+.|++++|.+.|+++. .++++..+..+...+...|+ ++|+..+++
T Consensus 752 ~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 752 TAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 99999999988764 23458888899999999999999999999987 56678889999999999999 889999999
Q ss_pred HHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 587 LLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 587 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
+.+..|+++..+..++.+|...|++++|.++++++.+.++.
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999987653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=1.6e-26 Score=261.42 Aligned_cols=603 Identities=11% Similarity=0.024 Sum_probs=446.6
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC--CCcchH-----------------HHH
Q 005802 2 RSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE--RNVFSW-----------------NTI 62 (676)
Q Consensus 2 r~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~-----------------~~l 62 (676)
..++.+.|.+.+.++.... +.++.++..++..+...|+.++|.+.+++..+ |+...+ ..+
T Consensus 40 ~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQ 118 (1157)
T ss_pred hhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHH
Confidence 4678999999999999877 55788999999999999999999999999875 443222 223
Q ss_pred HHHHHhcCChHHHHHHhccCCC--CCcccHH-HHHHH-HHhcCCChhHHHHHHHHhHhccCCCCC-ChhhHHHHHHHHHc
Q 005802 63 ISACIKSHDLKQARSLFDSSPH--KDLVTYN-SMLCG-YINAEGYEADALKLFIEMQSADEHIRM-DEFTVTSTLNLCVK 137 (676)
Q Consensus 63 l~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~ll~~-~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~ll~~~~~ 137 (676)
...+.+.|++++|...|+...+ |+..... ..... ....|+.. +|++.|+++.+ ..| +......+...+..
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~-~A~~~L~~ll~----~~P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRP-EAINQLQRLNA----DYPGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHH-HHHHHHHHHHH----hCCCCHHHHHHHHHHHHc
Confidence 4467889999999999998763 3322211 11122 22357888 99999999987 345 45567788888899
Q ss_pred cCCcHHHHHHHHHHHHhcCCC----------------CCc---hhhHHHHHhhhccchHHHHHhhhhcCCC-Cchh-hHH
Q 005802 138 LLNVGFGRQLHAFMVKTSNDA----------------SGF---AVSSLIDMYSKCRCYEEACRVFEGCTEE-VNLI-SKN 196 (676)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~----------------~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~ 196 (676)
.|+.++|.+.++.+.+..... +.. .+...+..+-.....+.|...++..... .++. ...
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 999999999999986642110 000 1112222222233344555555443321 1111 112
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCC-CC-CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHhHH---------H-
Q 005802 197 AMVAACCREGEMEMALKTFWRQPE-LN-DAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRW-NEHTF---------A- 263 (676)
Q Consensus 197 ~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~---------~- 263 (676)
.....+...|++++|+..|++... .| +...+..+...+.+.|++++|+..|++..+..... +...+ .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 334567788999999999987653 33 67788899999999999999999999998743221 11111 1
Q ss_pred --HHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CchhHHHHHHHHHhc
Q 005802 264 --SALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV--R-NSFSISSMIVGYSLQ 338 (676)
Q Consensus 264 --~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~ 338 (676)
.....+.+.|++++|...++++.+.. +.+...+..+..++...|++++|++.|++... | +...+..+...+. .
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Confidence 12345678999999999999999875 34566778889999999999999999998775 3 3445666666664 5
Q ss_pred CCHHHHHHHHhccCCCC------------chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhc
Q 005802 339 GNMEEARRHFDSLTEKN------------VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQA 406 (676)
Q Consensus 339 ~~~~~a~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 406 (676)
++.++|..+++.+.... ...+..+...+...|++++|+..|++.+... +-+...+..+...+...|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 68899999998876421 1234556778889999999999999974332 334566777888899999
Q ss_pred ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC----c---------chHHHHHHHHHHcCC
Q 005802 407 ALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD----L---------VLYNVMIACYAHHGH 473 (676)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~ 473 (676)
++++|...++.+.+.. +.++..+..+...+...++.++|...++.+.... . ..+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999988754 4455555566667788999999999999886431 1 112345677889999
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHH
Q 005802 474 EEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFM 552 (676)
Q Consensus 474 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 552 (676)
.++|..+++. .+++...+..+...+.+.|++++|...|+...+. .|+ ...+..++..|...|++++|++.+
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999872 2445566777888999999999999999999853 455 888999999999999999999999
Q ss_pred HhCC-CC-CcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc------cHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 553 KSIP-TE-EDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA------RYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 553 ~~~~-~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+... .. .+...+..+..++...|++++|.+++++++...|+++. .+..++.++...|++++|+..++....
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9887 33 45667777888999999999999999999988766543 566779999999999999999999864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2.3e-25 Score=252.03 Aligned_cols=584 Identities=11% Similarity=0.007 Sum_probs=429.3
Q ss_pred HHHHHHHHHhCCCchHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHhccCCC--CCcccH------------
Q 005802 28 TNQLIHIYSKHNLLRESRKLFDEMPE---RNVFSWNTIISACIKSHDLKQARSLFDSSPH--KDLVTY------------ 90 (676)
Q Consensus 28 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~------------ 90 (676)
.-..++.+-..++.+.|.+.++++.. .|+..+..+...+.+.|+.++|.+.++...+ |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence 44445666778999999999999865 4667888899999999999999999998763 544332
Q ss_pred -----HHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhh-HHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhh
Q 005802 91 -----NSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFT-VTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVS 164 (676)
Q Consensus 91 -----~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (676)
-.+.+.+...|+++ +|+..|+...+ +.+|+... ...........|+.+.|...++.+.+.. +.+...+.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~-eA~~~~~~~l~---~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTE-EALASYDKLFN---GAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred chhhHHHHHHHHHhCCCHH-HHHHHHHHHcc---CCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 22334677889999 99999999985 23333321 1112222335689999999999999883 22334678
Q ss_pred HHHHHhhhccchHHHHHhhhhcCCCCchh-----hH-----------------HHHHHHHHhcCChhHHHHHHhhCCCC-
Q 005802 165 SLIDMYSKCRCYEEACRVFEGCTEEVNLI-----SK-----------------NAMVAACCREGEMEMALKTFWRQPEL- 221 (676)
Q Consensus 165 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~~- 221 (676)
.+...+...|+.++|+..++++...+... .+ ...+..+-.....+.|...+......
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 89999999999999999999876533211 11 11111111122244455555432211
Q ss_pred CCeee-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCc-hhHH-
Q 005802 222 NDAVS-WNTLISGYVQNGDAEEGLKLFVRMGENGVRW-NEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISN-PFVS- 297 (676)
Q Consensus 222 ~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~- 297 (676)
++... .......+...|++++|+..|++.... .| +...+..+..++.+.|++++|...|+...+...... ...+
T Consensus 266 ~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 266 ADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred cCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 12211 123345677899999999999999884 35 667888888999999999999999999988654221 1111
Q ss_pred -----------HHHHHHHHhcCChHHHHHHHHhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHhccCC--C-CchhHH
Q 005802 298 -----------SGIVDVYCKCENMNYAESMLLLKGVR---NSFSISSMIVGYSLQGNMEEARRHFDSLTE--K-NVVVWT 360 (676)
Q Consensus 298 -----------~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~ 360 (676)
......+.+.|++++|...+++.... +...+..+...+...|++++|++.|+++.+ | +...+.
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 12345677899999999999887653 455677788899999999999999999875 3 344566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCC--------CCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHH
Q 005802 361 ALFSGYVKAQNCEALFDLLSEFVTKEGVV--------TDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLIST 432 (676)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 432 (676)
.+...+. .++.++|+.+++.+ ...... .....+..+...+...|++++|...++.+.+.. +.++..+..
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l-~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~ 500 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASL-SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYR 500 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhC-CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 6666664 46789999988765 211100 011234455667788999999999999998875 456777888
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh---------HHHHHH
Q 005802 433 LVDMYSKCGNMTYAEIIFQNFIE--R-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV---------TFVAIL 500 (676)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll 500 (676)
+...|.+.|++++|...++++.+ | +...+..+...+...++.++|+..++++......++.. .+..+.
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 99999999999999999998753 3 44555556666778999999999998865433222221 123455
Q ss_pred HHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHh
Q 005802 501 SAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
..+...|+.++|..+++. .+++...+..+...+.+.|++++|++.++++. .+.++..+..++.++...|+++
T Consensus 581 ~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 678889999999999872 13346677889999999999999999999988 4557889999999999999999
Q ss_pred HHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 579 LAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
+|+..++++.+..|+++..+..++.++...|++++|.++++.+.....+
T Consensus 655 eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 655 AARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 9999999999999999999999999999999999999999999876543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=5e-23 Score=221.85 Aligned_cols=590 Identities=11% Similarity=-0.004 Sum_probs=366.4
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC--CCcchHHHHHHHHHhcCChHHHHHHhc
Q 005802 3 SLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE--RNVFSWNTIISACIKSHDLKQARSLFD 80 (676)
Q Consensus 3 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~ 80 (676)
.||+++|...|+...+.. |-++.++..|..+|...|+.++|+..+++..+ |+...|..++..+ ++.++|..+++
T Consensus 57 ~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 489999999999999988 44589999999999999999999999999876 4333343333333 88899999999
Q ss_pred cCC--CCCc-ccHHHHHHH--------HHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHH-HHHHHccCCcHHHHHHH
Q 005802 81 SSP--HKDL-VTYNSMLCG--------YINAEGYEADALKLFIEMQSADEHIRMDEFTVTST-LNLCVKLLNVGFGRQLH 148 (676)
Q Consensus 81 ~~~--~~~~-~~~~~ll~~--------~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~ 148 (676)
++. .|+. .++..+... |.+. + .|.+.++ ... ....|+..+.... .+.+...++++.+...+
T Consensus 133 ~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---e-qAl~AL~-lr~--~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 133 ELLAQQKACDAVPTLRCRSEVGQNALRLAQL---P-VARAQLN-DAT--FAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHhCCCChhHHHHHHHHhhccchhhhhhH---H-HHHHHHH-Hhh--hCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 987 3543 344444443 4444 4 6666666 333 3344455555555 88999999999999999
Q ss_pred HHHHHhcCCCCCchhhHHHHHhhh-ccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCC----CCC
Q 005802 149 AFMVKTSNDASGFAVSSLIDMYSK-CRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPE----LND 223 (676)
Q Consensus 149 ~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~ 223 (676)
..+.+.+... ......|...|.. .++ +++..++.... +.++..+..+.+.+.+.|+.++|.+++.+++. .|.
T Consensus 206 ~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~l-k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 206 NEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGI-FTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 9999985433 3336667777877 467 88888866422 35788888999999999999999999988764 233
Q ss_pred eeeHHHH------------------------------HHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHH--hC
Q 005802 224 AVSWNTL------------------------------ISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSAC--CG 271 (676)
Q Consensus 224 ~~~~~~l------------------------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~ 271 (676)
..+|-.+ +..+.+.+.++.+.++. .+.|.... ..++.. ..
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~r~~~~~~ 354 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM--LEERYAVSVA 354 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH--HHHHHhhccc
Confidence 3232221 23333444444333221 13343332 122222 23
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCC--Cc---h-hHHHHHHHHHhcCC---HH
Q 005802 272 LRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVR--NS---F-SISSMIVGYSLQGN---ME 342 (676)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~---~-~~~~li~~~~~~~~---~~ 342 (676)
.+...++...+..+.+.. +-+....-.+.-...+.|+.++|..++...... +. . ...-++..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 355556666666665542 224444444445566777788888877766551 11 1 22244555555544 22
Q ss_pred HHHHHH-------------------------hccCC---C--CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCH
Q 005802 343 EARRHF-------------------------DSLTE---K--NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDA 392 (676)
Q Consensus 343 ~a~~~~-------------------------~~~~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 392 (676)
++..+. ..... + +...|..+..++.. ++..+|+..+.+.... .|+.
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~ 509 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDA 509 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCch
Confidence 222221 11111 1 33445555555554 6666677766655222 2444
Q ss_pred hHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHH---HHHHHH
Q 005802 393 LILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNV---MIACYA 469 (676)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~ 469 (676)
.....+...+...|++++|...++.+... +|+...+..+...+.+.|++++|...++...+.++..... +...+.
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~ 587 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 43333344445677777777777665443 3333444555666667777777777776665433222222 222333
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 005802 470 HHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKA 548 (676)
Q Consensus 470 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 548 (676)
..|++++|...+++..+ ..|+...+..+..++.+.|++++|...+++... ..|+ ...+..+..++...|++++|
T Consensus 588 ~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 588 IPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred hCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 44777777777777766 345666666666777777777777777777663 3455 56666667777777777777
Q ss_pred HHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 549 IEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 549 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
++.+++.. .+.++..+..+..++...|++++|+..++++++..|++..+....+++..+..+++.|.+.+++.-.-++
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 77777665 3445666677777777777777777777777777777777777777777777777777776666554444
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=3e-21 Score=208.18 Aligned_cols=577 Identities=9% Similarity=-0.033 Sum_probs=409.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC--C-CcchHHHHHHH--------HHhcC
Q 005802 2 RSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE--R-NVFSWNTIISA--------CIKSH 70 (676)
Q Consensus 2 r~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~--------~~~~g 70 (676)
+.|+.++|+..+++..+.. |+-..|..++..+ ++.++|..+++++.. | +..++..+... |.+.+
T Consensus 90 ~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~e 164 (987)
T PRK09782 90 HFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLP 164 (987)
T ss_pred HCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHH
Confidence 5789999999999999876 3444444444333 899999999999875 4 34555555554 77776
Q ss_pred ChHHHHHHhccCCCC--CcccHHHH-HHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHc-cCCcHHHHH
Q 005802 71 DLKQARSLFDSSPHK--DLVTYNSM-LCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVK-LLNVGFGRQ 146 (676)
Q Consensus 71 ~~~~A~~~~~~~~~~--~~~~~~~l-l~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~ 146 (676)
....+++ .....| +..+.... .+.|.+.++++ .|++++.++.+ .+ ..+..-...+-.++.. .++ +.+..
T Consensus 165 qAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~-~Ai~lL~~L~k--~~-pl~~~~~~~L~~ay~q~l~~-~~a~a 237 (987)
T PRK09782 165 VARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWS-QADTLYNEARQ--QN-TLSAAERRQWFDVLLAGQLD-DRLLA 237 (987)
T ss_pred HHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHH-HHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHhhCH-HHHHH
Confidence 6666666 222234 34444544 89999999999 99999999997 32 2234445666667766 366 66766
Q ss_pred HHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCC----CCchhhHH--------------------------
Q 005802 147 LHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE----EVNLISKN-------------------------- 196 (676)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~-------------------------- 196 (676)
+++. .+..+...+..++..|.+.|+.++|.+.+.++.. .|...++-
T Consensus 238 l~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~ 313 (987)
T PRK09782 238 LQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQ 313 (987)
T ss_pred Hhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHH
Confidence 6442 3334566888999999999999999999987765 23333221
Q ss_pred ----HHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHH--HhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 005802 197 ----AMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGY--VQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACC 270 (676)
Q Consensus 197 ----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 270 (676)
.++..+.+.++++-+.++...- |.... ..++.. ...+...++...++.|-... +-+......+--...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~ 387 (987)
T PRK09782 314 YVVGATLPVLLKEGQYDAAQKLLATL---PANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLM 387 (987)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhcCC---CcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 1256677778888777664422 22222 233322 23466777777777776631 224444444455567
Q ss_pred CCCChHHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhcCC---hHHHHHH-------------------------HHhc
Q 005802 271 GLRNVKCAKEIHSWVLKN-G-LISNPFVSSGIVDVYCKCEN---MNYAESM-------------------------LLLK 320 (676)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~a~~~-------------------------~~~~ 320 (676)
..|+.++|.++++..... + ..++......++..|.+.+. ...+..+ +...
T Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 467 (987)
T PRK09782 388 QNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL 467 (987)
T ss_pred HcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh
Confidence 889999999999988762 1 23345556678888888766 3333222 1111
Q ss_pred CC---C--CchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHH--HHHHHHcCChHHHHHHHHHHHHcCCCCCCHh
Q 005802 321 GV---R--NSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTAL--FSGYVKAQNCEALFDLLSEFVTKEGVVTDAL 393 (676)
Q Consensus 321 ~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 393 (676)
.. + +...|..+...+.. ++.++|+..+.+.....+..++.+ ...+...|++++|+..|+++ ... +|+..
T Consensus 468 l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka-~~~--~p~~~ 543 (987)
T PRK09782 468 LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKI-SLH--DMSNE 543 (987)
T ss_pred cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHH-hcc--CCCcH
Confidence 11 1 34456666666665 889899997777654333344444 44456899999999999986 332 44445
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCcchHHHHHHHHHHc
Q 005802 394 ILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI--ERDLVLYNVMIACYAHH 471 (676)
Q Consensus 394 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~ 471 (676)
.+..+...+...|+.+.|...++...+.. +.....+..+.....+.|++++|...+++.. .|+...|..+...+.+.
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 56667778889999999999999998865 3333444444445556699999999999887 46777899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHH
Q 005802 472 GHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAI 549 (676)
Q Consensus 472 ~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 549 (676)
|++++|+..+++.... .|+ ...+..+..++...|++++|...+++..+ ..|+ ...+..+..++...|++++|+
T Consensus 623 G~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~---l~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 623 HNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHK---GLPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999985 565 55677777889999999999999999974 3566 888999999999999999999
Q ss_pred HHHHhCC-CCCc-HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCCh
Q 005802 550 EFMKSIP-TEED-AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNW 611 (676)
Q Consensus 550 ~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 611 (676)
..+++.. ..|+ ..+............+++.+.+.+++....+|... +....+.++...+++
T Consensus 698 ~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 698 HYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred HHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhcccc
Confidence 9999987 4554 45666777788888899999999999999999876 666667776666655
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=5.2e-21 Score=182.61 Aligned_cols=438 Identities=14% Similarity=0.137 Sum_probs=346.1
Q ss_pred hhHHHHHhhhccchHHHHHhhhhcCCCCchhhHH--HHHHHHHhcCChhHHHHHHhh-CCC-CCCeeeHHHHHHHHHhcC
Q 005802 163 VSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKN--AMVAACCREGEMEMALKTFWR-QPE-LNDAVSWNTLISGYVQNG 238 (676)
Q Consensus 163 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~-~~~-~~~~~~~~~li~~~~~~g 238 (676)
...|.+..-+.|++.+|++.....-++.+..+-+ .+-.++....+.+....--.. +.. +.-..+|..+...+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 5566777778888888888776555432222222 222344444455544322211 111 234567888999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCChHHHHHH
Q 005802 239 DAEEGLKLFVRMGENGVRWN-EHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVS-SGIVDVYCKCENMNYAESM 316 (676)
Q Consensus 239 ~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~ 316 (676)
++++|+.+|+.|.+ ++|+ ...|..+..++...|+.+.|.+.|.+.++.+ |+.... +.+.......|+.++|...
T Consensus 131 ~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 131 QLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999998 4564 4678888889999999999999998888754 554433 3444555567889999988
Q ss_pred HHhcCCCC---chhHHHHHHHHHhcCCHHHHHHHHhccCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 005802 317 LLLKGVRN---SFSISSMIVGYSLQGNMEEARRHFDSLTEKN---VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVT 390 (676)
Q Consensus 317 ~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p 390 (676)
+.+....+ ...|+.|.-.+-.+|+...|+..|++...-| ...|-.|...|...+.+++|+..|.+.+ ...|
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl---~lrp 283 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL---NLRP 283 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH---hcCC
Confidence 87766533 4678999999999999999999999988643 3478888999999999999999998763 3345
Q ss_pred C-HhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHH
Q 005802 391 D-ALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIA 466 (676)
Q Consensus 391 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 466 (676)
+ ...+..+...|-..|.++.|...+++.++.. +.=+..|+.|..++-..|++.+|...|.+... ....+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 4 4566777777888999999999999988764 33367899999999999999999999998763 34567888999
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCC
Q 005802 467 CYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQ 544 (676)
Q Consensus 467 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 544 (676)
.+...|.+++|..+|....+ +.|. ...++.|...|.+.|++++|+..+++.. .++|+ ...|+.+...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999887 5666 5678889999999999999999999887 78999 8899999999999999
Q ss_pred HHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhH
Q 005802 545 LEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAE 613 (676)
Q Consensus 545 ~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 613 (676)
.+.|.+.+.++. ..| -......|...|..+|+..+|+..|+.++++.|+.+..|-.|+.++.-..+|.+
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999999988 444 566888999999999999999999999999999999999999888766666655
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.3e-18 Score=175.51 Aligned_cols=428 Identities=12% Similarity=0.091 Sum_probs=201.3
Q ss_pred ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCC--CchhhHHHHHhhhccchHHHHHhhhhcCC-CCch--hhHHHH
Q 005802 124 DEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDAS--GFAVSSLIDMYSKCRCYEEACRVFEGCTE-EVNL--ISKNAM 198 (676)
Q Consensus 124 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~~l 198 (676)
++...+.|.+-+.-.|++..+..+...+......-. ...|--+..+|-..|++++|...|.+..+ .++. ..+--+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 344444444555555555555555555444321111 11344455555555555555555543332 2222 122234
Q ss_pred HHHHHhcCChhHHHHHHhhCCC-CC-CeeeHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCC
Q 005802 199 VAACCREGEMEMALKTFWRQPE-LN-DAVSWNTLISGYVQNG----DAEEGLKLFVRMGENGVRWNEHTFASALSACCGL 272 (676)
Q Consensus 199 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 272 (676)
...+.+.|+++.+...|+.+.. .| +..+...|...|...+ ..+.|..++.+....- +-|...|..+...+. .
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-Q 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-h
Confidence 4455555555555555544332 12 2223333333333332 2233333333333311 112233333332222 2
Q ss_pred CChHHHHHHHHHHH----HhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC-------CCc-----h-hHHHHHHHH
Q 005802 273 RNVKCAKEIHSWVL----KNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV-------RNS-----F-SISSMIVGY 335 (676)
Q Consensus 273 ~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~-----~-~~~~li~~~ 335 (676)
+++..+..++..+. ..+-.+-+.+.|.+...+...|+++.|...|..... ++. . +--.+...+
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 22222233333322 233334445555555555555555555554443221 111 0 111122333
Q ss_pred HhcCCHHHHHHHHhccCCCCc--h-hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHH
Q 005802 336 SLQGNMEEARRHFDSLTEKNV--V-VWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGK 412 (676)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~--~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 412 (676)
-..++.+.|.+.+..+....+ + .|--+.......++..+|..++++.+......|+..++ +-..+.....+..|.
T Consensus 507 E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl--~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL--LGNLHLKKSEWKPAK 584 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH--HHHHHHhhhhhcccc
Confidence 344555556566665554221 1 22222211222345556666666554444444444332 222334444444444
Q ss_pred HHHHHHHHcC-CCCChhHHHHHHHHHHh------------cCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChhH
Q 005802 413 EIHAYILRMG-VQMDKKLISTLVDMYSK------------CGNMTYAEIIFQNFIER---DLVLYNVMIACYAHHGHEEK 476 (676)
Q Consensus 413 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 476 (676)
.-+..+.+.- ..+|+...-+|.+.|.+ .+..++|.++|.++.+. |..+-|-+...++..|++.+
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchH
Confidence 4343333321 12344444444444332 23456677777666532 44455556666777777777
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 477 AILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 477 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
|..+|.+..+... -+..+|..+..+|...|++..|+++|+...+++.-.-+..+...|.+++.+.|++.+|.+.+..+.
T Consensus 665 A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 665 ARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7777777776532 234456667777777777777777777776665544557777777777777777777777766555
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=5.8e-20 Score=175.55 Aligned_cols=424 Identities=13% Similarity=0.082 Sum_probs=344.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCC
Q 005802 195 KNAMVAACCREGEMEMALKTFWRQPELNDAVSWN--TLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGL 272 (676)
Q Consensus 195 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 272 (676)
...|..-..+.|++++|++.-.......+..+-+ .+-..+.+..+.+.....-....+. .+--..+|..+.+.+...
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 5566777788999999998876665322222222 2223455556666554443333332 223457899999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHHHHHHHh
Q 005802 273 RNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSF---SISSMIVGYSLQGNMEEARRHFD 349 (676)
Q Consensus 273 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~ 349 (676)
|+++.|...++.+++.. +.....|..+..++...|+.+.|...|....+-++. ..+.+...+-..|++.+|...+.
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999999999875 235678889999999999999999999887775443 23345556667899999999888
Q ss_pred ccCC--CC-chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC-HhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCC
Q 005802 350 SLTE--KN-VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTD-ALILVILLGACALQAALHPGKEIHAYILRMGVQM 425 (676)
Q Consensus 350 ~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 425 (676)
+..+ |. .+.|+.|...+...|+...|+..|++.+ .+.|+ ...|..|-..+...+.++.|...+.+..... +.
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv---kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV---KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh---cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 7765 33 4689999999999999999999999863 33444 3467888888999999999999998877654 45
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFIE--RD-LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILS 501 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 501 (676)
....+..+...|...|.++.|+..|++... |+ ...|+.|..++...|++.+|...|.+... +.|+ ....+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 567788888899999999999999998873 43 45899999999999999999999999988 4555 567888999
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHh
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~ 578 (676)
.+...|.+++|..+|.... .+.|. ...++.|...|-++|++++|+.-++++. +.| -...+..+++.|...|+.+
T Consensus 363 i~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 9999999999999999887 66788 7789999999999999999999999988 555 5668999999999999999
Q ss_pred HHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 005802 579 LAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRF 629 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 629 (676)
.|++.+.+++..+|.-+..+..|+.+|...|+..+|+.-++...+..+..+
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 999999999999999999999999999999999999999999998776544
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=7.7e-18 Score=179.30 Aligned_cols=420 Identities=15% Similarity=0.057 Sum_probs=285.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhCCC-CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHhCC
Q 005802 195 KNAMVAACCREGEMEMALKTFWRQPE-LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWN-EHTFASALSACCGL 272 (676)
Q Consensus 195 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 272 (676)
+......+.+.|++++|+..|++... .|+...|..+..+|.+.|++++|++.++...+. .|+ ...+..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 33455667777888888888866443 566667777777788888888888888887763 343 45666677777888
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccC
Q 005802 273 RNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLT 352 (676)
Q Consensus 273 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (676)
|++++|..-+..+...+...+.. ...++..+........+...+.... ++..++..+.. +...........-+....
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 88888877776555443211111 1122221111111222333332221 12222222222 221111111111111111
Q ss_pred CCCc---hhHHHHHHH---HHHcCChHHHHHHHHHHHHcCCCCCC-HhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCC
Q 005802 353 EKNV---VVWTALFSG---YVKAQNCEALFDLLSEFVTKEGVVTD-ALILVILLGACALQAALHPGKEIHAYILRMGVQM 425 (676)
Q Consensus 353 ~~~~---~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 425 (676)
+.+. ..+..+... ....+++++|+..|++.+......|+ ...+..+...+...|++++|...++...+.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 1111 111111111 12347899999999998544334444 4556667777788999999999999988764 34
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILS 501 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 501 (676)
....+..+...+...|++++|...|+.... .+...|..+...+...|++++|+..|++.++. .|+ ...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHH
Confidence 466788889999999999999999998753 35678999999999999999999999999985 454 566777888
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCc-HHH-------HHHHHHHH
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEED-AVI-------LGSFLNVC 571 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~-------~~~l~~~~ 571 (676)
++.+.|++++|...++..... .|+ ...+..+..++...|++++|++.|++.. ..|+ ... ++..+..+
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 899999999999999998753 455 7889999999999999999999999976 3332 111 11122233
Q ss_pred HHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 572 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
...|++++|...++++++++|++...+..|+.++.+.|++++|++.+++..+..
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 446999999999999999999999899999999999999999999999987653
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.9e-16 Score=158.72 Aligned_cols=607 Identities=12% Similarity=0.046 Sum_probs=340.0
Q ss_pred HHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC------CCcc-----hHHHHHHHHHhc------
Q 005802 7 KEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE------RNVF-----SWNTIISACIKS------ 69 (676)
Q Consensus 7 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~-----~~~~ll~~~~~~------ 69 (676)
.++-+++..+...+- -..+|..+...|.+.|..++...+++.-.. .|+. .++.+...+...
T Consensus 25 PD~~ev~~IL~~e~a--~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~ 102 (1018)
T KOG2002|consen 25 PDATEVLSILKAEQA--PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKK 102 (1018)
T ss_pred CChHHHHHHHHHhcC--chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666666652 356899999999999999999999988762 1221 222222222221
Q ss_pred -----CChHHHHHHhccCCC-----CCcccHHHHHHHHHhcCCC--hhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHc
Q 005802 70 -----HDLKQARSLFDSSPH-----KDLVTYNSMLCGYINAEGY--EADALKLFIEMQSADEHIRMDEFTVTSTLNLCVK 137 (676)
Q Consensus 70 -----g~~~~A~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~--~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~ 137 (676)
.-+..|..+|+.... +....+.. ..|...+.. + .|...|.-..+. -+++...+.-=......
T Consensus 103 ~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~--~~~l~~~~~~~~-~A~a~F~~Vl~~---sp~Nil~LlGkA~i~yn 176 (1018)
T KOG2002|consen 103 KDEKDELFDKATLLFDLADKIDMYEDSHLLVQR--GFLLLEGDKSMD-DADAQFHFVLKQ---SPDNILALLGKARIAYN 176 (1018)
T ss_pred cchhHHHHHHHHHHhhHHHHhhccCcchhhhhh--hhhhhcCCccHH-HHHHHHHHHHhh---CCcchHHHHHHHHHHhc
Confidence 113345555544322 22111111 122223333 5 777777777651 22233333222233346
Q ss_pred cCCcHHHHHHHHHHHHh--cCCCCCchhhHHHHHhhhccchHHHHHhhhhcCC-CCchhhHHHHHHHHH----hcCChhH
Q 005802 138 LLNVGFGRQLHAFMVKT--SNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE-EVNLISKNAMVAACC----REGEMEM 210 (676)
Q Consensus 138 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~----~~g~~~~ 210 (676)
.+++..|..+|...... ...||.. -.+-.++.+.|+.+.|+..|+...+ .|+.+.....+..+. ....+..
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHH
Confidence 67888888888886554 2333332 3344666778888888888776655 332221111111111 1223444
Q ss_pred HHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CcHhHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005802 211 ALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVR--WNEHTFASALSACCGLRNVKCAKEIHSWVL 286 (676)
Q Consensus 211 A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (676)
+..++...-. ..|++..+.|...|.-.|+++.++.+...+...... .-...|-.+.+++-..|++++|...|.+..
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 5555433221 346666777777777777777777777777653311 123446667777777777777777777766
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCC---CchhHHHHHHHHHhcC----CHHHHHHHHhccCCCC---c
Q 005802 287 KNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVR---NSFSISSMIVGYSLQG----NMEEARRHFDSLTEKN---V 356 (676)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~---~ 356 (676)
+.....-...+-.|.++|.+.|+.+.+...|+..... +..+...|...|...+ ..+.|..++.+..++. .
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 6542222333445677777777777777777666542 2233334444444332 3455555555544432 2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHH---HcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHc---CCCCCh---
Q 005802 357 VVWTALFSGYVKAQNCEALFDLLSEFV---TKEGVVTDALILVILLGACALQAALHPGKEIHAYILRM---GVQMDK--- 427 (676)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~--- 427 (676)
..|-.+...+-.. +...++..|.... ...+..+.....+.+.......|+++.|...+...... ...++.
T Consensus 415 ~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~ 493 (1018)
T KOG2002|consen 415 EAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKS 493 (1018)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccccc
Confidence 2333333333222 2222233333221 22233344444555555555555555555555444332 011111
Q ss_pred ---hHHHHHHHHHHhcCCH----------------------------------HHHHHHHhhcC---CCCcchHHHHHHH
Q 005802 428 ---KLISTLVDMYSKCGNM----------------------------------TYAEIIFQNFI---ERDLVLYNVMIAC 467 (676)
Q Consensus 428 ---~~~~~l~~~~~~~g~~----------------------------------~~A~~~~~~~~---~~~~~~~~~l~~~ 467 (676)
.+--.+..++-..+++ .+|...+..+. ..++..+..+...
T Consensus 494 ~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 494 TNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 1112223333333344 44444444433 2344455555556
Q ss_pred HHHcCChhHHHHHHHHHHHCC-CCCCHhHHHHHHHHhhc------------cCcHHHHHHHHHHchhhcCCCCCHHHHHH
Q 005802 468 YAHHGHEEKAILLFEEMLEKG-IKPDAVTFVAILSAFRH------------CGSVEMGEKYFNSMTADYKISPETDHYAC 534 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 534 (676)
+.....+..|.+-|+...+.- ..+|..+...|.+.|.. .+..++|+++|.+.... -+.|...-+-
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANG 651 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANG 651 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccc
Confidence 666666666666555544421 12455555555554432 24567788888877642 2334677777
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc--cCCCCccHHHHHHHHHhcCC
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL--EGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~ 610 (676)
+.-.++..|++.+|..+|.... ......+|..+..+|...|+|-.|+++|+...+. ..+++.+...|+.++.+.|+
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 8888889999999999998877 3346678889999999999999999999988877 34567788899999999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 005802 611 WAEMGRIRKQMRGMKG 626 (676)
Q Consensus 611 ~~~A~~~~~~~~~~~~ 626 (676)
+.+|.+.+.......+
T Consensus 732 ~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999998887776555
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=8.5e-19 Score=177.44 Aligned_cols=295 Identities=14% Similarity=0.127 Sum_probs=211.2
Q ss_pred hcCCHHHHHHHHhccCCC---CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC---HhHHHHHHHHHHhhcChhH
Q 005802 337 LQGNMEEARRHFDSLTEK---NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTD---ALILVILLGACALQAALHP 410 (676)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~ 410 (676)
..|++++|...|.++.+. +..++..+...+...|++++|+.+++.+ ...+..++ ...+..+...+...|+++.
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNL-LSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 344555555666655432 2335566666666677777777777666 22221111 2345556666666777777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC--------cchHHHHHHHHHHcCChhHHHHHHH
Q 005802 411 GKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD--------LVLYNVMIACYAHHGHEEKAILLFE 482 (676)
Q Consensus 411 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~ 482 (676)
|..++..+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+...|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 777776666542 3455667777777777777777777777765321 1134567777888999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC
Q 005802 483 EMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE 559 (676)
Q Consensus 483 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 559 (676)
++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ ...+..++.+|.+.|++++|...++++. ..|
T Consensus 205 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 205 KALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 998753 223557777888999999999999999999754 344 4668889999999999999999999987 567
Q ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh---cCChhHHHHHHHHHHhCCCcccCceeEEE
Q 005802 560 DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA---EGNWAEMGRIRKQMRGMKGNRFAGCSWVY 636 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 636 (676)
+...+..++..+...|++++|..+++++.+..|++.. +..+...+.. .|+.++|...+++|.+++++.+|.+....
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~~ 359 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCRN 359 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECCC
Confidence 7777788888999999999999999999999998764 4444444443 56999999999999999988888755443
Q ss_pred Ec
Q 005802 637 VE 638 (676)
Q Consensus 637 ~~ 638 (676)
++
T Consensus 360 cg 361 (389)
T PRK11788 360 CG 361 (389)
T ss_pred CC
Confidence 43
No 19
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.82 E-value=9.4e-17 Score=160.14 Aligned_cols=569 Identities=14% Similarity=0.068 Sum_probs=358.6
Q ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC----CCcchHHHHHHHHHhcCChHHHHHHhccCCCCC
Q 005802 11 ICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE----RNVFSWNTIISACIKSHDLKQARSLFDSSPHKD 86 (676)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 86 (676)
.++..+...|+.|+..||.++|.-||..|+++.|- +|..|.- .+...++.++.++.++++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46778889999999999999999999999999999 9988875 35578999999999999988765 689
Q ss_pred cccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHH-HhcCCCCCchhhH
Q 005802 87 LVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMV-KTSNDASGFAVSS 165 (676)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ 165 (676)
..||+.|+.+|.+.|+.. . |+...+ ....+...+...|....-..++..+. ..+..|| -..
T Consensus 83 aDtyt~Ll~ayr~hGDli-~----fe~veq----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd---a~n 144 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLI-L----FEVVEQ----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD---AEN 144 (1088)
T ss_pred hhHHHHHHHHHHhccchH-H----HHHHHH----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh---HHH
Confidence 999999999999999887 3 433332 12223334444554444433333221 1122233 345
Q ss_pred HHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhc-CChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHH
Q 005802 166 LIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCRE-GEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGL 244 (676)
Q Consensus 166 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 244 (676)
++....-.|-++.+++++..++..........+++-+... ..+++-..........|+..+|.+++.....+|+.+.|.
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 6666777888888888888777621111122234443332 345555555555654689999999999999999999999
Q ss_pred HHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH--------
Q 005802 245 KLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESM-------- 316 (676)
Q Consensus 245 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-------- 316 (676)
.++.+|++.|++.+.+.|..|+-+ .++...++.++.-|.+.|+.|+..|+...+-.+..+|....+.+.
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~t 301 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFT 301 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhh
Confidence 999999999999999999999877 889999999999999999999999998877766664443222111
Q ss_pred ----------------HHhcC---------CC------CchhHHHHHHHHHhcCCHHHHHHHHhccCCC-------Cchh
Q 005802 317 ----------------LLLKG---------VR------NSFSISSMIVGYSLQGNMEEARRHFDSLTEK-------NVVV 358 (676)
Q Consensus 317 ----------------~~~~~---------~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~ 358 (676)
+++-. .+ -+.+.-+++.-...+|+-++.+.+-..+..| ++..
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a 381 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDA 381 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHH
Confidence 00000 00 0011122222233356666666666655543 2334
Q ss_pred HHHHHHHHHHc----------------------CChHHHHHHHHHHHHcCCCCCCH------------------------
Q 005802 359 WTALFSGYVKA----------------------QNCEALFDLLSEFVTKEGVVTDA------------------------ 392 (676)
Q Consensus 359 ~~~li~~~~~~----------------------~~~~~a~~~~~~m~~~~~~~p~~------------------------ 392 (676)
|..++.-|.+. ....+..+..... .||.
T Consensus 382 ~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l------rkns~lr~lv~Lss~Eler~he~~~~~~ 455 (1088)
T KOG4318|consen 382 FGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL------RKNSFLRQLVGLSSTELERSHEPWPLIA 455 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh------CcchHHHHHhhhhHHHHhcccccchhhh
Confidence 44444433332 1122222222221 2221
Q ss_pred ----hHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC------cchHH
Q 005802 393 ----LILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD------LVLYN 462 (676)
Q Consensus 393 ----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~ 462 (676)
..-..++..|++.-+..+++..-+.....-++ ..|..||+.++...+.+.|..+.+++..++ ..-+.
T Consensus 456 h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~ 532 (1088)
T KOG4318|consen 456 HLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMT 532 (1088)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHH
Confidence 11233444455555555554433333332222 567888999999999999999998887653 44577
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHh
Q 005802 463 VMIACYAHHGHEEKAILLFEEMLEKGI-KPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYG 540 (676)
Q Consensus 463 ~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 540 (676)
.+.+.+.+.+....+..++.++.+.-. .|+ ..++-.+++.....|+.+...++++-+..- |+.-+ .-++....
T Consensus 533 ~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl-gl~et----gPl~~vhL 607 (1088)
T KOG4318|consen 533 SLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL-GLSET----GPLWMVHL 607 (1088)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh-hhhhc----ccceEEEe
Confidence 888888999999999999999887322 222 445556667777778888777777766433 44332 23445556
Q ss_pred hcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHH---------------------HhCCHhHHHHHHHHH--HcccCCC-
Q 005802 541 RANQLEKAIEFMKSIP--TEEDAVILGSFLNVCR---------------------LNRNAELAGEAEEKL--LRLEGNN- 594 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~---------------------~~~~~~~a~~~~~~~--~~~~p~~- 594 (676)
+.++...|.+..+... .+|.+.....+...+. +.|++.+|..+.+-- .-..|.|
T Consensus 608 rkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr 687 (1088)
T KOG4318|consen 608 RKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDR 687 (1088)
T ss_pred eccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCcc
Confidence 6677666666654433 3444443333333332 223322222222210 0001111
Q ss_pred -------------------CccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 595 -------------------KARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 595 -------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
......|...|.+.|+++.|..+|.++.
T Consensus 688 ~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q 734 (1088)
T KOG4318|consen 688 DTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ 734 (1088)
T ss_pred ccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc
Confidence 1234567889999999999999999987
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=8.9e-17 Score=174.18 Aligned_cols=401 Identities=8% Similarity=-0.022 Sum_probs=241.8
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHhHHHHHHH
Q 005802 191 NLISKNAMVAACCREGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRW-NEHTFASALS 267 (676)
Q Consensus 191 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~ 267 (676)
++....-.+......|+.++|++++.+... +.+...+..+...+...|++++|..+|++..+. .| +......+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 444445566677778888888888877652 223334777777788888888888888887763 34 3445556666
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CchhHHHHHHHHHhcCCHHHH
Q 005802 268 ACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV--R-NSFSISSMIVGYSLQGNMEEA 344 (676)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a 344 (676)
.+...|++++|...++.+.+.. +.+.. +..+..++...|+.+.|...+++... | +...+..+...+...+..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 7777888888888888877763 23444 66677777777777777776666554 2 223344455555556666666
Q ss_pred HHHHhccCCCCch--------hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcCh---hHHHH
Q 005802 345 RRHFDSLTEKNVV--------VWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAAL---HPGKE 413 (676)
Q Consensus 345 ~~~~~~~~~~~~~--------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~ 413 (676)
++.++.... ++. ....++......+. ...+.+ +.|..
T Consensus 170 l~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~-------------------------------~~~~r~~~ad~Al~ 217 (765)
T PRK10049 170 LGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTR-------------------------------SEKERYAIADRALA 217 (765)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccccc-------------------------------ChhHHHHHHHHHHH
Confidence 666665554 111 00011111100000 001111 33444
Q ss_pred HHHHHHHc-CCCCChh-HH-HH---HHHHHHhcCCHHHHHHHHhhcCCCC--cc--hHHHHHHHHHHcCChhHHHHHHHH
Q 005802 414 IHAYILRM-GVQMDKK-LI-ST---LVDMYSKCGNMTYAEIIFQNFIERD--LV--LYNVMIACYAHHGHEEKAILLFEE 483 (676)
Q Consensus 414 ~~~~~~~~-~~~~~~~-~~-~~---l~~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~l~~~~~~~~~~~~A~~~~~~ 483 (676)
.++.+.+. ...|+.. .+ .. .+..+...|++++|...|+.+.+.+ .. .-..+...|...|++++|+..|++
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44444432 1111111 10 00 0223345566777777777665321 11 112245567777777777777777
Q ss_pred HHHCCCCC---CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcC----------CCCC---HHHHHHHHHHHhhcCCHHH
Q 005802 484 MLEKGIKP---DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYK----------ISPE---TDHYACMIDLYGRANQLEK 547 (676)
Q Consensus 484 m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~ 547 (676)
+.+..... .......+..++...|++++|..+++.+..... -.|+ ...+..++..+...|++++
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 66532111 123344555566777777777777777754310 0122 2344566777788888888
Q ss_pred HHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 548 AIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 548 A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
|++.++++. .+.++..+..+...+...|+.++|+..++++++.+|+++..+..++.++...|++++|..+++.+.+..
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 888888876 455667777788888888888888888888888888888888888888888888888888888887655
Q ss_pred Cc
Q 005802 626 GN 627 (676)
Q Consensus 626 ~~ 627 (676)
++
T Consensus 458 Pd 459 (765)
T PRK10049 458 PQ 459 (765)
T ss_pred CC
Confidence 43
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=2.9e-16 Score=167.31 Aligned_cols=416 Identities=10% Similarity=0.014 Sum_probs=266.5
Q ss_pred hHHHHHhhhccchHHHHHhhhhcCC-CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCCh
Q 005802 164 SSLIDMYSKCRCYEEACRVFEGCTE-EVNLISKNAMVAACCREGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDA 240 (676)
Q Consensus 164 ~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 240 (676)
......+.+.|++++|+..|++... .|+...|..+..+|.+.|++++|++.+..... +.+...|..+..++...|++
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 3444555666666666666665443 45556666666667777777777776655442 22445666677777777777
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhc
Q 005802 241 EEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLK 320 (676)
Q Consensus 241 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 320 (676)
++|+.-|......+- .+......++..+.. ..+........+.. +++...+..+.. |...........-+...
T Consensus 211 ~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 211 ADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 777777765544321 111111111111111 11222222222221 111112222211 11111111111111111
Q ss_pred CCCCc---hhHHHHHHH---HHhcCCHHHHHHHHhccCCC------CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005802 321 GVRNS---FSISSMIVG---YSLQGNMEEARRHFDSLTEK------NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGV 388 (676)
Q Consensus 321 ~~~~~---~~~~~li~~---~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 388 (676)
...+. ..+..+... ....+++++|.+.|+...+. ....|+.+...+...|++++|+..|++.+..
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--- 360 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--- 360 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Confidence 11111 111111111 12346788888888877642 2346778888888999999999999987332
Q ss_pred CCC-HhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CcchHHHH
Q 005802 389 VTD-ALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--R-DLVLYNVM 464 (676)
Q Consensus 389 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 464 (676)
.|+ ...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++... | +...+..+
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 343 5577777888889999999999999888764 55678888999999999999999999998763 3 45677788
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCH-H-------HHHHH
Q 005802 465 IACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPET-D-------HYACM 535 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~~~~l 535 (676)
...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|...|++... +.|+. . .++..
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHH
Confidence 89999999999999999999874 34 467888888999999999999999999864 33431 1 12222
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 536 IDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
...+...|++++|.+++++.. ..| +...+..++.++...|++++|+..++++.++.+...
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 233445699999999999876 334 556788899999999999999999999999877643
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=7.3e-16 Score=163.41 Aligned_cols=441 Identities=10% Similarity=0.010 Sum_probs=259.2
Q ss_pred HccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHH--HHHHHhcCChhHHHH
Q 005802 136 VKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAM--VAACCREGEMEMALK 213 (676)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~ 213 (676)
.+.|+++.|...+++..+.........+ .++..+...|+.++|+..+++...+.+...+..+ ...+...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555555555554444111111122 4444444445555555555544421122222222 334455566666665
Q ss_pred HHhhCCC-C-CCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005802 214 TFWRQPE-L-NDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLI 291 (676)
Q Consensus 214 ~~~~~~~-~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 291 (676)
+++++.. . .+...+..++..+...++.++|++.++++.. ..|+...+..++..+...++..+|.+.++++.+.. +
T Consensus 124 ly~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P 200 (822)
T PRK14574 124 LWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE--RDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-P 200 (822)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-C
Confidence 5555443 2 2334444555566666666666666666655 23444444333333333444444666666666654 3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhcCCC-CchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcC
Q 005802 292 SNPFVSSGIVDVYCKCENMNYAESMLLLKGVR-NSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQ 370 (676)
Q Consensus 292 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 370 (676)
.+...+..++.++.+.|-...|.++....+.- +...+..+ ..+.|.+..+....++..- -. +--
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~~~~~~~----~~---r~~ 265 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAVLPTRSE----TE---RFD 265 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhcccccccc----hh---hHH
Confidence 34555566666666666666666555443310 00000000 0011111111111110000 00 001
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHhH-----HHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 005802 371 NCEALFDLLSEFVTKEGVVTDALI-----LVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTY 445 (676)
Q Consensus 371 ~~~~a~~~~~~m~~~~~~~p~~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 445 (676)
-.+.|+.-++.++...+..|.... ..-.+.++...++..++...++.+...+.+....+...+.++|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 234555556665444443343222 223345667888888888889888888877777788889999999999999
Q ss_pred HHHHHhhcCCC---------CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCC-----------CCC--H-hHHHHHHHH
Q 005802 446 AEIIFQNFIER---------DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGI-----------KPD--A-VTFVAILSA 502 (676)
Q Consensus 446 A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~--~-~~~~~ll~~ 502 (676)
|..+|..+..+ +......|.-++...+++++|..+++++.+.-. .|| - ..+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 99999887532 222346788889999999999999999987311 122 1 223445667
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHH
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELA 580 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 580 (676)
+...|+..+|++.++.+... -+-|......+.+.+...|.+.+|++.++... ..| +..+....+.++...+++.+|
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 88899999999999999643 23348888899999999999999999997766 344 556667777888888999999
Q ss_pred HHHHHHHHcccCCCCcc
Q 005802 581 GEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~ 597 (676)
..+.+.+.+..|+++..
T Consensus 504 ~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 504 ELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHhhCCCchhH
Confidence 99999999999998743
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=2e-17 Score=167.44 Aligned_cols=290 Identities=13% Similarity=0.154 Sum_probs=145.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcC
Q 005802 232 SGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISN---PFVSSGIVDVYCKCE 308 (676)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 308 (676)
..+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++ ..++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34456677777777777777642 12334566666677777777777777777666432221 133455555555666
Q ss_pred ChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005802 309 NMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGV 388 (676)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 388 (676)
+++.|...|.++...+ ..+..+++.++..+.+.|++++|.+.++.+......
T Consensus 122 ~~~~A~~~~~~~l~~~----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (389)
T PRK11788 122 LLDRAEELFLQLVDEG----------------------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD 173 (389)
T ss_pred CHHHHHHHHHHHHcCC----------------------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC
Confidence 6665554444333210 012233444444444444444444444444211111
Q ss_pred CCC---HhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC--cchH
Q 005802 389 VTD---ALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--RD--LVLY 461 (676)
Q Consensus 389 ~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~ 461 (676)
.+. ...+..+...+...+++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|+++.. |+ ..++
T Consensus 174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 111 0112233334444455555555554444432 22233444455555555555555555555442 21 1234
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh
Q 005802 462 NVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR 541 (676)
Q Consensus 462 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 541 (676)
+.++.+|...|++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+...+..++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhh
Confidence 55555566666666666666665553 344444455555566666666666666655432 4555555555554443
Q ss_pred ---cCCHHHHHHHHHhCC
Q 005802 542 ---ANQLEKAIEFMKSIP 556 (676)
Q Consensus 542 ---~g~~~~A~~~~~~~~ 556 (676)
.|+.+++..+++++.
T Consensus 328 ~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 328 EAEEGRAKESLLLLRDLV 345 (389)
T ss_pred ccCCccchhHHHHHHHHH
Confidence 335555555555544
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=5.8e-16 Score=167.87 Aligned_cols=402 Identities=8% Similarity=-0.057 Sum_probs=235.1
Q ss_pred hhccchHHHHHhhhhcCC--CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHH
Q 005802 171 SKCRCYEEACRVFEGCTE--EVNLISKNAMVAACCREGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKL 246 (676)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~ 246 (676)
...|+.++|++++..... +.....+..+...+...|++++|..+|++... +.+...+..+...+...|++++|+..
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 334444444444443332 22233455555666666666666666655321 33444556666677777777777777
Q ss_pred HHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCch
Q 005802 247 FVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSF 326 (676)
Q Consensus 247 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 326 (676)
+++..+. .|+...+..+..++...|+.+.|...++.+.+... .+...+..+..++...+..+.|...++.... ++.
T Consensus 106 l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~ 181 (765)
T PRK10049 106 AKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPA 181 (765)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHH
Confidence 7777664 23322255666666777777777777777777642 2444455566667777777777777765554 211
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCCh---HHHHHHHHHHHHcCCCCCCHh-HHH----HH
Q 005802 327 SISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNC---EALFDLLSEFVTKEGVVTDAL-ILV----IL 398 (676)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~~p~~~-~~~----~l 398 (676)
....+ ..+.+........ .......+++ ++|+..++.++......|+.. .+. ..
T Consensus 182 ~~~~l--------~~~~~~~~~r~~~----------~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 182 EKRDL--------EADAAAELVRLSF----------MPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHH--------HHHHHHHHHHhhc----------ccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 00000 0000001110000 0001111122 445555555432212222211 110 01
Q ss_pred HHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------cchHHHHHHHHHHc
Q 005802 399 LGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD-------LVLYNVMIACYAHH 471 (676)
Q Consensus 399 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~ 471 (676)
+..+...++.++|...++.+.+.+.+........+..+|...|++++|...|+.+...+ ......+..++...
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 22334445666666666665555421111112224556777777777777777654221 12344555667788
Q ss_pred CChhHHHHHHHHHHHCC-----------CCCCH---hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHH
Q 005802 472 GHEEKAILLFEEMLEKG-----------IKPDA---VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMI 536 (676)
Q Consensus 472 ~~~~~A~~~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 536 (676)
|++++|.++++++.... -.|+. ..+..+...+...|++++|+..++++... .|+ ...+..++
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA 400 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYA 400 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 88888888888877642 12332 23455667788899999999999999753 454 78888999
Q ss_pred HHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 537 DLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
..+...|++++|++.++++. ..| +...+...+..+...|++++|+.+++++++..|+++.+
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999988 445 56677777778899999999999999999999998754
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=3.2e-16 Score=166.10 Aligned_cols=326 Identities=10% Similarity=0.021 Sum_probs=178.6
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005802 225 VSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVY 304 (676)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (676)
.....++..+.+.|++++|..+++........+ ...+..++.++...|+++.|...++.+.+.. +.+...+..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 334556667778888888888888877744322 3344444556666888888888888887764 23455566666677
Q ss_pred HhcCChHHHHHHHHhcCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhccCC--CCc-hhHHHHHHHHHHcCChHHHHHH
Q 005802 305 CKCENMNYAESMLLLKGV--R-NSFSISSMIVGYSLQGNMEEARRHFDSLTE--KNV-VVWTALFSGYVKAQNCEALFDL 378 (676)
Q Consensus 305 ~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~ 378 (676)
...|+++.|...+++... | +...+..+...+...|+.++|...++.+.. |+. ..+..+ ..+...|++++|+..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 777777777755554433 1 223344444444444555554454443321 211 112111 224444555555555
Q ss_pred HHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---
Q 005802 379 LSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--- 455 (676)
Q Consensus 379 ~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 455 (676)
++.+ .+....++......+...+.+.|++++|...+++...
T Consensus 200 ~~~~------------------------------------l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p 243 (656)
T PRK15174 200 ARAL------------------------------------LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL 243 (656)
T ss_pred HHHH------------------------------------HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 5444 3332122222223334445555555555555554431
Q ss_pred CCcchHHHHHHHHHHcCChhH----HHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-H
Q 005802 456 RDLVLYNVMIACYAHHGHEEK----AILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-T 529 (676)
Q Consensus 456 ~~~~~~~~l~~~~~~~~~~~~----A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~ 529 (676)
.+...+..+...+...|++++ |...|++..+. .|+ ...+..+...+...|++++|...+++.... .|+ .
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~ 318 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLP 318 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCH
Confidence 133445555566666666554 56666666653 333 445556666666666666666666666532 344 4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHH-HHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 530 DHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVI-LGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
..+..+..++.+.|++++|+..++++. ..|+... +..+..++...|++++|...++++.+..|++
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 455556666666666666666666655 3343322 2233445666666666666666666666654
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=1.3e-16 Score=169.12 Aligned_cols=319 Identities=11% Similarity=0.046 Sum_probs=235.1
Q ss_pred HHHHHhcCChHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhccCC--C-CchhHHHHHHHHHHcCChHH
Q 005802 301 VDVYCKCENMNYAESMLLLKGV---RNSFSISSMIVGYSLQGNMEEARRHFDSLTE--K-NVVVWTALFSGYVKAQNCEA 374 (676)
Q Consensus 301 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~ 374 (676)
+..+.+.|+++.|..++..... .+...+..++.+....|++++|...++++.. | +...+..+...+...|++++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 3334444444444444443322 1223333444444455666666677776654 2 34567777778888888888
Q ss_pred HHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 005802 375 LFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI 454 (676)
Q Consensus 375 a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 454 (676)
|+..+++.+.. .+.+...+..+...+...|+.++|...+..+...... +...+..+ ..+.+.|++++|...++.+.
T Consensus 129 Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 129 VADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 88888876332 2334556667777788888888888888777665432 23333333 34788999999999999876
Q ss_pred CC----CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHH----HHHHHHHchhhcCCC
Q 005802 455 ER----DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEM----GEKYFNSMTADYKIS 526 (676)
Q Consensus 455 ~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~ 526 (676)
+. +...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++ |...+++... ..
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~ 280 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FN 280 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hC
Confidence 43 23344555678889999999999999999853 2346677778889999999986 8999999874 45
Q ss_pred CC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHH
Q 005802 527 PE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLAN 603 (676)
Q Consensus 527 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 603 (676)
|+ ...+..+...+.+.|++++|+..+++.. .+.++..+..+..++...|++++|+..++++.+..|+++..+..++.
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~ 360 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA 360 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 66 7889999999999999999999999987 44466778888889999999999999999999999998877777899
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCc
Q 005802 604 VYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
++...|++++|...++...+..++
T Consensus 361 al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhChh
Confidence 999999999999999999877654
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=4.3e-13 Score=130.03 Aligned_cols=485 Identities=15% Similarity=0.094 Sum_probs=378.1
Q ss_pred HccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCC--CCchhhHHHHHHHHHhcCChhHHHH
Q 005802 136 VKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE--EVNLISKNAMVAACCREGEMEMALK 213 (676)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 213 (676)
....+.+.|.-++....+. -.+-.-|-.+|.+..-++.|.+++++..+ +-+..+|.+-...--..|+++...+
T Consensus 387 VelE~~~darilL~rAvec-----cp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVEC-----CPQSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 3444555576677666665 12223455566677777888888876665 4466677666666667788877777
Q ss_pred HHhhCCC-------CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc--HhHHHHHHHHHhCCCChHHHHHHHHH
Q 005802 214 TFWRQPE-------LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWN--EHTFASALSACCGLRNVKCAKEIHSW 284 (676)
Q Consensus 214 ~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~ 284 (676)
++++-.. ..+...|-.=...|-..|..-.+..+....+..|+.-. ..|+..-...|.+.+.++.|..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 7654221 22444455555667777888888888888888777543 35788888899999999999999998
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhccCCC---Cchh
Q 005802 285 VLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV--R-NSFSISSMIVGYSLQGNMEEARRHFDSLTEK---NVVV 358 (676)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~ 358 (676)
.++.- +.+..+|......--..|..+.-..+|++... | ....|......+-..|++..|..++...-+. +...
T Consensus 542 alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseei 620 (913)
T KOG0495|consen 542 ALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEI 620 (913)
T ss_pred HHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHH
Confidence 88763 44666777777777778888888888887765 3 4456777777888899999999999887653 4457
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 005802 359 WTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYS 438 (676)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (676)
|-.-+.....+.+++.|..+|.+. ....|+...|.--+..--..+..++|..+++...+. ++.-...|..+.+.+-
T Consensus 621 wlaavKle~en~e~eraR~llaka---r~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKA---RSISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHH---hccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHH
Confidence 778888888999999999999976 346778888877777777788999999999888775 3555678888899999
Q ss_pred hcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHH
Q 005802 439 KCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKY 515 (676)
Q Consensus 439 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 515 (676)
+.++.+.|...|..-.+ ..+..|..|...--+.|..-.|..++++..-.+ +-+...|...|+.-.+.|..+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999987664 356688888888889999999999999988765 33678899999999999999999999
Q ss_pred HHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 516 FNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 516 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
..+..++ .+.+-..|..-|.+..+.++-..+.+.+++. ..|+.++..+...+....++++|...|+++.+.+|++.
T Consensus 776 makALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 776 MAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 9988874 3444777888888888888888888888887 46777788888899999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEE
Q 005802 596 ARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYV 637 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 637 (676)
.+|..+-..+...|.-++-.+++.+.....+. -|..|+.+
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~EP~--hG~~W~av 891 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETAEPT--HGELWQAV 891 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC--CCcHHHHH
Confidence 99999999999999999999999988776553 34445533
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=4.8e-13 Score=134.99 Aligned_cols=608 Identities=14% Similarity=0.092 Sum_probs=338.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccC---CCCCcchHHHHHHHHHhcCChHHHHHHh
Q 005802 3 SLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEM---PERNVFSWNTIISACIKSHDLKQARSLF 79 (676)
Q Consensus 3 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 79 (676)
.|++++|.+++..+++.. +-+...|..|...|-..|+.+++...+-.. ...|...|..+-......|+++.|+-+|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 389999999999999888 667889999999999999999888776443 2356688888888889999999999999
Q ss_pred ccCCCCCcccHHH---HHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhH----HHHHHHHHccCCcHHHHHHHHHHH
Q 005802 80 DSSPHKDLVTYNS---MLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTV----TSTLNLCVKLLNVGFGRQLHAFMV 152 (676)
Q Consensus 80 ~~~~~~~~~~~~~---ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~ 152 (676)
.+..+.++.-|.. -...|-+.|+.. .|++.|.++.+ ...+.|..-+ -.+++.+...++.+.|.+.++...
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~-~Am~~f~~l~~--~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLK-RAMETFLQLLQ--LDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHH-HHHHHHHHHHh--hCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8877533333333 344677789999 99999999986 2221122222 334555666666688888887776
Q ss_pred HhcC-CCCCchhhHHHHHhhhccchHHHHHhhhhcCC---C----------------------CchhhHH----HHHHHH
Q 005802 153 KTSN-DASGFAVSSLIDMYSKCRCYEEACRVFEGCTE---E----------------------VNLISKN----AMVAAC 202 (676)
Q Consensus 153 ~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~----------------------~~~~~~~----~l~~~~ 202 (676)
..+. .-+...++.++..|.+...++.|......... . ++..+|. .+.-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 6322 23334788888888888888888776543222 0 1111111 011111
Q ss_pred --HhcCChhHHHHHHhhCCC---CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHH
Q 005802 203 --CREGEMEMALKTFWRQPE---LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKC 277 (676)
Q Consensus 203 --~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 277 (676)
.+.+...+++.-|..... .-++..|.-+..++...|++.+|+.+|..+.....--+...|..+..++...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 123334444333322211 123445666667777777777777777777665444455566777777777777777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCch------------hHHHHHHHHHhcCCHHHHH
Q 005802 278 AKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSF------------SISSMIVGYSLQGNMEEAR 345 (676)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~li~~~~~~~~~~~a~ 345 (676)
|.+.|+.++... +.+...-..|...+-+.|+.++|.+.+..+..||.. ........+...|+.++=+
T Consensus 468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 777777776653 234445555666677777777777777766555421 1122333455556555533
Q ss_pred HHHhccCCC--------------------------CchhHHHHHHHHHHcCChHHHHHHHHHH-----HHcCCCCCCH--
Q 005802 346 RHFDSLTEK--------------------------NVVVWTALFSGYVKAQNCEALFDLLSEF-----VTKEGVVTDA-- 392 (676)
Q Consensus 346 ~~~~~~~~~--------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m-----~~~~~~~p~~-- 392 (676)
.+...|..+ +.......+.+-.+.++.....+-...- ....+..-+.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 333222210 0011111122222222211111000000 0111111111
Q ss_pred hHHHHHHHHHHhhcChhHHHHHHHHHHHcCC--CCCh---hHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----C---cc
Q 005802 393 LILVILLGACALQAALHPGKEIHAYILRMGV--QMDK---KLISTLVDMYSKCGNMTYAEIIFQNFIER-----D---LV 459 (676)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~~ 459 (676)
..+.-++.++++.++.++|..+...+..... .++. ..-...+.+.+..+++..|...+..+... + ..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 1234445556666666666666655554321 1111 12233344455566666666666655422 1 22
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA--VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMI 536 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 536 (676)
.||...+.+.+.++-.--..++..... ..|+. ........-....+.+..|+..+-+... ..|+ +.+--++.
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QNPDSPLINLCLG 781 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH---hCCCCcHHHHHHH
Confidence 455444444444432222222222221 12221 1111111223445777788877766653 3466 33322333
Q ss_pred HHHhh--c--------CCHHHHHHHHHhCC--CCC--cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc------
Q 005802 537 DLYGR--A--------NQLEKAIEFMKSIP--TEE--DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA------ 596 (676)
Q Consensus 537 ~~~~~--~--------g~~~~A~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------ 596 (676)
.++.. . -..-+++.++.+.. ..+ ...++-.++++|...|-...|..+|+++++..|.+..
T Consensus 782 lafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~ 861 (895)
T KOG2076|consen 782 LAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDN 861 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCc
Confidence 33321 1 12345555655444 223 5567778888999999999999999999888654311
Q ss_pred ------cHHHHHHHHHhcCChhHHHHHHHH
Q 005802 597 ------RYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 597 ------~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
+-..|.-+|...|+..-|.+++++
T Consensus 862 ~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 862 YDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred ccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 234566788899999988888764
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=2.2e-13 Score=144.72 Aligned_cols=445 Identities=9% Similarity=-0.011 Sum_probs=279.9
Q ss_pred HHhcCCChhHHHHHHHHhHhccCCCCCChh-hHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCc-hhhHH--HHHhhh
Q 005802 97 YINAEGYEADALKLFIEMQSADEHIRMDEF-TVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGF-AVSSL--IDMYSK 172 (676)
Q Consensus 97 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~ 172 (676)
..+.|+.. .|+..|++..+ ..|+.. ....++..+...|+.+.|..+++... .|+.. .+..+ ...+..
T Consensus 44 ~~r~Gd~~-~Al~~L~qaL~----~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 44 RARAGDTA-PVLDYLQEESK----AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHhCCCHH-HHHHHHHHHHh----hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHH
Confidence 34677777 77777777765 445431 22266666677777777777777766 22222 22222 446667
Q ss_pred ccchHHHHHhhhhcCC--CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC-CCCeeeHHHHHHHHHhcCChhHHHHHHHH
Q 005802 173 CRCYEEACRVFEGCTE--EVNLISKNAMVAACCREGEMEMALKTFWRQPE-LNDAVSWNTLISGYVQNGDAEEGLKLFVR 249 (676)
Q Consensus 173 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 249 (676)
.|++++|+++++++.. +.++..+..++..+...++.++|++.++++.. .|+...+-.++..+...++..+|+..+++
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 7777777777777665 33456666777888888999999888888764 44444443333333345666669999999
Q ss_pred HHhCCCCC-cHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCc---
Q 005802 250 MGENGVRW-NEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNS--- 325 (676)
Q Consensus 250 m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--- 325 (676)
+.+.. | +...+..+..++.+.|-...|.++...- |+.++-...... ..+.|.+..+....++.
T Consensus 195 ll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 195 AVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred HHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhcccccccch
Confidence 98853 5 4566677888888888888888766542 222211111100 01111111111111100
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhc----cCC-CCc-----hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHH
Q 005802 326 FSISSMIVGYSLQGNMEEARRHFDS----LTE-KNV-----VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALIL 395 (676)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~----~~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 395 (676)
..|. -.+.|..-++. ... |.. ...--.+-++...|++.++++.|+.+ ...+.+....+-
T Consensus 262 ~r~~----------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l-~~~~~~~P~y~~ 330 (822)
T PRK14574 262 ERFD----------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM-EAEGYKMPDYAR 330 (822)
T ss_pred hhHH----------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-hhcCCCCCHHHH
Confidence 0000 01112222222 221 211 11123445667778888888888887 666665555577
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHHcC-----CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C------------
Q 005802 396 VILLGACALQAALHPGKEIHAYILRMG-----VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--R------------ 456 (676)
Q Consensus 396 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~------------ 456 (676)
..+..+|...+.+++|..++..+.... .+++......|..+|...+++++|..+++++.+ |
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 410 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE 410 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence 777888888888888888887776543 122333356778888888888888888887753 1
Q ss_pred -C--c-chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHH
Q 005802 457 -D--L-VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDH 531 (676)
Q Consensus 457 -~--~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 531 (676)
| - ..+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|.+.++... .+.|+ ..+
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~ 486 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLIL 486 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHH
Confidence 1 1 124456777889999999999999998753 3467788888889999999999999998775 45677 777
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhCCHh
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
....+..+...|++.+|..+.++.. ..|+......+-.....+..++
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r~~~~h~~~~ 534 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDRQRKVHNMYE 534 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhhhHH
Confidence 7788899999999999999988776 4454444444333333333333
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=2.3e-13 Score=125.28 Aligned_cols=322 Identities=12% Similarity=0.159 Sum_probs=183.2
Q ss_pred cccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHH--HccCCcHHHH-HHHHHHHHhcCCCCCchh
Q 005802 87 LVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLC--VKLLNVGFGR-QLHAFMVKTSNDASGFAV 163 (676)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~-~~~~~~~~~~~~~~~~~~ 163 (676)
+.+=|.|+.. ..+|... ++.-+|+.|++ .++..+...-..+++.. .+..++--++ +-|-.|.+.|-
T Consensus 116 V~~E~nL~km-IS~~EvK-Ds~ilY~~m~~--e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E------- 184 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVK-DSCILYERMRS--ENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE------- 184 (625)
T ss_pred hcchhHHHHH-Hhhcccc-hhHHHHHHHHh--cCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-------
Confidence 4566677765 4677888 88889999998 77777776665555533 2333333221 11222222211
Q ss_pred hHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHH
Q 005802 164 SSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEG 243 (676)
Q Consensus 164 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 243 (676)
.+..+| +.|.+.+ ++.+.. +.+..+|.+||.++|+--..+.|
T Consensus 185 --------------------------~S~~sW--------K~G~vAd---L~~E~~-PKT~et~s~mI~Gl~K~~~~ERA 226 (625)
T KOG4422|consen 185 --------------------------DSTSSW--------KSGAVAD---LLFETL-PKTDETVSIMIAGLCKFSSLERA 226 (625)
T ss_pred --------------------------cccccc--------ccccHHH---HHHhhc-CCCchhHHHHHHHHHHHHhHHHH
Confidence 112222 3444433 333333 45667788888888888888888
Q ss_pred HHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCC
Q 005802 244 LKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVR 323 (676)
Q Consensus 244 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 323 (676)
.++|++-.....+.+..+|+.+|.+-.-..+ .+++.+|......||..|+|+++++..+.|+++.|...+
T Consensus 227 ~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa------ 296 (625)
T KOG4422|consen 227 RELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA------ 296 (625)
T ss_pred HHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH------
Confidence 8888888777777888888888876543333 677788888888888888888888888888887776222
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhccC----CCCchhHHHHHHHHHHcCChH-HHHHHHHHHHH---cCCC----CCC
Q 005802 324 NSFSISSMIVGYSLQGNMEEARRHFDSLT----EKNVVVWTALFSGYVKAQNCE-ALFDLLSEFVT---KEGV----VTD 391 (676)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~---~~~~----~p~ 391 (676)
.+++.+|+ +|...+|..+|..+++.++.. .+..++.+++. ...+ +.|
T Consensus 297 ---------------------lqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 297 ---------------------LQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred ---------------------HHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 23333333 355555666666555555542 34444444421 1111 123
Q ss_pred HhHHHHHHHHHHhhcChhHHHHHHHHHHHcC----CCCCh---hHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCcch
Q 005802 392 ALILVILLGACALQAALHPGKEIHAYILRMG----VQMDK---KLISTLVDMYSKCGNMTYAEIIFQNFIE----RDLVL 460 (676)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~ 460 (676)
...|...+..|.+..+.+.|..+........ +.|+. .-|..+..+.|+....+.-...|+.|.. |+..+
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 4456666677777777777766665554321 12221 1233344444555555555555555542 23334
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEKG 488 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g 488 (676)
...++++....|+++-.-++|..++..|
T Consensus 436 m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 436 MIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 4444455555555555555555555544
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=5.3e-14 Score=129.42 Aligned_cols=402 Identities=12% Similarity=0.073 Sum_probs=277.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCC--Cch-HHHHHhccCCC-----------------------CCc
Q 005802 3 SLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHN--LLR-ESRKLFDEMPE-----------------------RNV 56 (676)
Q Consensus 3 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~-~a~~~~~~~~~-----------------------~~~ 56 (676)
++.+.++.-++++|.+.|.+.+...-..|+..-+..+ ++. .-++.|-.|.. .+.
T Consensus 128 ~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~ 207 (625)
T KOG4422|consen 128 SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTD 207 (625)
T ss_pred hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCc
Confidence 5778889999999999999999988877776655432 222 22334444431 356
Q ss_pred chHHHHHHHHHhcCChHHHHHHhccCC----CCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHH
Q 005802 57 FSWNTIISACIKSHDLKQARSLFDSSP----HKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTL 132 (676)
Q Consensus 57 ~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll 132 (676)
.+|..+|.++|+-...+.|.+++.+.. +-+..+||.+|.+-.-. .-.+++.+|.+ ..++||..|+|+++
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-----~~K~Lv~EMis--qkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-----VGKKLVAEMIS--QKMTPNLFTFNALL 280 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh-----ccHHHHHHHHH--hhcCCchHhHHHHH
Confidence 799999999999999999999998876 35667888888876433 44789999999 88999999999999
Q ss_pred HHHHccCCcH----HHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHH-HHhhhhcCC-----------CCchhhHH
Q 005802 133 NLCVKLLNVG----FGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEA-CRVFEGCTE-----------EVNLISKN 196 (676)
Q Consensus 133 ~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~-----------~~~~~~~~ 196 (676)
.+.++.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+. ..++.++.. +.+...+.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 9999999776 4678999999999999999999999999999988653 333332221 23455667
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCC-------CCC---eeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHH
Q 005802 197 AMVAACCREGEMEMALKTFWRQPE-------LND---AVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASAL 266 (676)
Q Consensus 197 ~l~~~~~~~g~~~~A~~~~~~~~~-------~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 266 (676)
.-++.|.+..+.+-|.++-.-+.. .|+ ..-|..+....++....+...+.|+.|.-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 778888888888888777644332 122 2235667778888899999999999999887889999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHH
Q 005802 267 SACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSF---SISSMIVGYSLQGNMEE 343 (676)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~ 343 (676)
++....+.++-.-+++..++..|........--++..+++.. ..|+.. .+.....-++ ..-.+.
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a-ad~~e~ 507 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCA-ADIKEA 507 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHH-HHHHHH
Confidence 999999999999999999998886555444444444444332 011111 1111111110 001111
Q ss_pred HHHHHhccCC--CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC---HhHHHHHHHHHHhhcChhHHHHHHHHH
Q 005802 344 ARRHFDSLTE--KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTD---ALILVILLGACALQAALHPGKEIHAYI 418 (676)
Q Consensus 344 a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~ 418 (676)
....-.++.. -.....+.....+.+.|+..+|.++|..+.....--|- .....-++......++...|..+++.+
T Consensus 508 ~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 508 YESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1111122222 23445677777778888888888888877433333333 333335555566667777777777777
Q ss_pred HHcCCC
Q 005802 419 LRMGVQ 424 (676)
Q Consensus 419 ~~~~~~ 424 (676)
...+.+
T Consensus 588 ~~~n~~ 593 (625)
T KOG4422|consen 588 SAFNLP 593 (625)
T ss_pred HHcCch
Confidence 655543
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=8.3e-15 Score=135.51 Aligned_cols=438 Identities=12% Similarity=0.045 Sum_probs=285.5
Q ss_pred HHHHHhhhccchHHHHHhhhhcCC---CCchh-hHHHHHHHHHhcCChhHHHHHHhhCCC-CCCe------eeHHHHHHH
Q 005802 165 SLIDMYSKCRCYEEACRVFEGCTE---EVNLI-SKNAMVAACCREGEMEMALKTFWRQPE-LNDA------VSWNTLISG 233 (676)
Q Consensus 165 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~~li~~ 233 (676)
.|.+-|.......+|+..++-+.+ -|+.. .-..+-..+.+...+.+|++.++.... .|++ ...+.+--.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 334445555666777777765443 11111 112234556667777888777754432 2221 123334445
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCc------------hhHHHHHH
Q 005802 234 YVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISN------------PFVSSGIV 301 (676)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~l~ 301 (676)
|++.|+++.|+.-|+...+ ..|+..+-..|+-++...|+.+...+.|..++.....+| ....+.-+
T Consensus 286 fiq~gqy~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCME--EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHH--hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 7788899999988888776 458877766666677778888888888888876432222 22222211
Q ss_pred -----HHHHhcCC--hHHHHHHHHhcCC----CCch---hH----------HH--------HHHHHHhcCCHHHHHHHHh
Q 005802 302 -----DVYCKCEN--MNYAESMLLLKGV----RNSF---SI----------SS--------MIVGYSLQGNMEEARRHFD 349 (676)
Q Consensus 302 -----~~~~~~g~--~~~a~~~~~~~~~----~~~~---~~----------~~--------li~~~~~~~~~~~a~~~~~ 349 (676)
.-.-+... .+.+...-.++.. |+-. -| .. -...+.+.|+++.|+++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 11111111 1122111112222 2210 00 00 1123678899999999888
Q ss_pred ccCCCCchhHHHHHH-----HHHH-cCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCC
Q 005802 350 SLTEKNVVVWTALFS-----GYVK-AQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGV 423 (676)
Q Consensus 350 ~~~~~~~~~~~~li~-----~~~~-~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 423 (676)
-+.++|..+-.+... -|.+ -.++..|..+-+..+.. -+-+......--......|+++.|.+.+++.....-
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 887765544332222 2222 23455555554443111 111222222222223457899999999999887653
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 005802 424 QMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAIL 500 (676)
Q Consensus 424 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 500 (676)
.-....|+ +.-.+...|++++|+..|-++. ..++.+...+...|....+..+|++++.+.... ++.|+..+..|.
T Consensus 522 sc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 522 SCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 33333333 3345678899999999988764 567778888899999999999999999887663 444677888999
Q ss_pred HHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHH-HHhCCHh
Q 005802 501 SAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVC-RLNRNAE 578 (676)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~-~~~~~~~ 578 (676)
..|-+.|+-..|.+.+-.--. -++-+..+...|...|....-+++|+.+|++.. ..|+..-|..++..| .+.|+++
T Consensus 600 dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 999999999999988764422 344458898899999999999999999999987 899999999888865 6889999
Q ss_pred HHHHHHHHHHcccCCCCccHHHHHHHHHhcCC
Q 005802 579 LAGEAEEKLLRLEGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 610 (676)
+|..+|+......|.+......|+.++...|.
T Consensus 678 ka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999999887774
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=1.2e-11 Score=120.27 Aligned_cols=572 Identities=12% Similarity=0.035 Sum_probs=408.2
Q ss_pred CChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC---CCcchHH------------HHHH----
Q 005802 4 LNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE---RNVFSWN------------TIIS---- 64 (676)
Q Consensus 4 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~------------~ll~---- 64 (676)
+|...|..++.++.+.+ |.++..|-.-...=-..|.+.-|..+..+-.+ .+..+|- +++.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr 343 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVR 343 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 57788899999999888 55666776666666667777777777654322 1122222 2221
Q ss_pred -------HHHhcCChH----HHHHHhccCCC--C-CcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHH
Q 005802 65 -------ACIKSHDLK----QARSLFDSSPH--K-DLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTS 130 (676)
Q Consensus 65 -------~~~~~g~~~----~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ 130 (676)
.++++-+++ .-.++++...+ | ++..|...+ .-...+ .|.-++.+..+ .-|.. ..
T Consensus 344 ~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAV----elE~~~-darilL~rAve----ccp~s---~d 411 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAV----ELEEPE-DARILLERAVE----CCPQS---MD 411 (913)
T ss_pred hCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHH----hccChH-HHHHHHHHHHH----hccch---HH
Confidence 122222221 12223332221 3 333344333 345666 68888888775 33322 12
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCC-------CCchhhHHHHHHHHH
Q 005802 131 TLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE-------EVNLISKNAMVAACC 203 (676)
Q Consensus 131 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~l~~~~~ 203 (676)
|.-++++...++.|..+++...+. ++.+..+|.+-...--..|+.+...+++++-.. ..+..-|-.=...|-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 344566667788889998888776 555666777777777778888888877764322 223333434444444
Q ss_pred hcCChhHHHHHHhhCCC-----CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhCCCChHH
Q 005802 204 REGEMEMALKTFWRQPE-----LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRW-NEHTFASALSACCGLRNVKC 277 (676)
Q Consensus 204 ~~g~~~~A~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~ 277 (676)
+.|.+--+..+...... .---.+|+.-...|.+.+.++-|..+|...++ +-| +...|..+...--..|..+.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHH
Confidence 44544444444332211 11235788888889999999999999998887 444 44566666666667889999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHhccCC-
Q 005802 278 AKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVR---NSFSISSMIVGYSLQGNMEEARRHFDSLTE- 353 (676)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 353 (676)
...++++++..- +-....+-.....+...|++..|..++.+..+- +...|-.-+........++.|..+|.+...
T Consensus 569 l~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 569 LEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 999999999875 334556667777888899999999999887653 345677888888999999999999998875
Q ss_pred -CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHH
Q 005802 354 -KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLIST 432 (676)
Q Consensus 354 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 432 (676)
++...|.--+...--.++.++|++++++.+ ...+.-...|..+-..+-+.++.+.|...|..-.+. +|..+..+-.
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~l--k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEAL--KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHH--HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 566677666666667789999999998753 333444556777777888888999988887655443 5677888999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC--CC-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcH
Q 005802 433 LVDMYSKCGNMTYAEIIFQNFI--ER-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSV 509 (676)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 509 (676)
|...-.+.|.+-+|..+++... .| +...|-..|++-.+.|..+.|..++.+..+. ++.+...|..-|...-+.++-
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccc
Confidence 9999999999999999999875 33 7789999999999999999999999988875 555677888888888777776
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 005802 510 EMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKL 587 (676)
Q Consensus 510 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 587 (676)
..+...+++. .-|+...-.+...+....++++|.+.|.+.. .+....+|.-+...+.++|.-++-.+++.+.
T Consensus 804 Tks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 804 TKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred hHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6666666654 3467778888999999999999999999988 4456778888999999999999999999999
Q ss_pred HcccCCCCccHHHHH
Q 005802 588 LRLEGNNKARYVQLA 602 (676)
Q Consensus 588 ~~~~p~~~~~~~~l~ 602 (676)
....|.....|....
T Consensus 878 ~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 878 ETAEPTHGELWQAVS 892 (913)
T ss_pred hccCCCCCcHHHHHh
Confidence 999999887776654
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=1.2e-12 Score=132.04 Aligned_cols=541 Identities=12% Similarity=0.059 Sum_probs=271.4
Q ss_pred CCCchHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHhcc---CCCCCcccHHHHHHHHHhcCCChhHHHHHH
Q 005802 38 HNLLRESRKLFDEMPE---RNVFSWNTIISACIKSHDLKQARSLFDS---SPHKDLVTYNSMLCGYINAEGYEADALKLF 111 (676)
Q Consensus 38 ~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 111 (676)
.|++++|.+++.++.+ .+...|.+|...|-..|+.+++...+-. ..+.|..-|..+-.-..+.|++. .|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~-qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN-QARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH-HHHHHH
Confidence 3777777777776654 3445677777777777777776665532 22344556666666666666676 777777
Q ss_pred HHhHhccCCCCC-ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhh----HHHHHhhhccchHHHHHhhhhc
Q 005802 112 IEMQSADEHIRM-DEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVS----SLIDMYSKCRCYEEACRVFEGC 186 (676)
Q Consensus 112 ~~m~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~ 186 (676)
.+.++ ..| +...+-.=...|-+.|+...|..-+.++.+...+.|..-.. ..++.+...++-+.|.+.++..
T Consensus 231 ~rAI~----~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 231 SRAIQ----ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHh----cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77665 233 33333444555666677777777776666663322222111 2233444445555555555543
Q ss_pred CC----CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC-------------------------CCCeeeHHH----HHHH
Q 005802 187 TE----EVNLISKNAMVAACCREGEMEMALKTFWRQPE-------------------------LNDAVSWNT----LISG 233 (676)
Q Consensus 187 ~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------------~~~~~~~~~----li~~ 233 (676)
.. ..+...++.++..+.+...++.|......... .++..+|+. ++-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 32 22333445555555555555555444322210 001111110 1112
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC--cHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 005802 234 YVQNGDAEEGLKLFVRMGENGVRW--NEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMN 311 (676)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 311 (676)
+......+....+.....+..+.| +...|.-+..++...|++..|..++..+.......+..+|-.+..+|...|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 222222222333333333333222 223444444555555555555555555444433333444555555555555555
Q ss_pred HHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005802 312 YAESMLLLKGVRNSF---SISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGV 388 (676)
Q Consensus 312 ~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 388 (676)
.|.+.+......++. .-.+|...+.+.|+.++|.+.+..+..||... . ...+.
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~-----------------------~-e~~a~ 522 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN-----------------------A-EACAW 522 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc-----------------------h-hhccc
Confidence 555544444432222 22223333444455555555554444333110 0 11122
Q ss_pred CCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHc----------------------CCCCChhHHHHHHHHHHhcCCHHHH
Q 005802 389 VTDALILVILLGACALQAALHPGKEIHAYILRM----------------------GVQMDKKLISTLVDMYSKCGNMTYA 446 (676)
Q Consensus 389 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~g~~~~A 446 (676)
.|+..........+...|+.++-..+...+... +.+-...+...++.+-.+.++....
T Consensus 523 ~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 602 (895)
T KOG2076|consen 523 EPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVM 602 (895)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHh
Confidence 223333333333333444433322222221110 0111222222333333333332222
Q ss_pred HHHHhhc--------CCCCc----chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHh---HH-HHHHHHhhccCcH
Q 005802 447 EIIFQNF--------IERDL----VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAV---TF-VAILSAFRHCGSV 509 (676)
Q Consensus 447 ~~~~~~~--------~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~---~~-~~ll~~~~~~g~~ 509 (676)
..-...- ..-+. ..+.-++.++++.+++++|+.+...+......- +.. .+ ...+.++...+++
T Consensus 603 ~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~ 682 (895)
T KOG2076|consen 603 EKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDP 682 (895)
T ss_pred hhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCH
Confidence 2211111 01111 234556778899999999999999888643221 222 22 3345667788999
Q ss_pred HHHHHHHHHchhhcCCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHH--HHHHHhCCHhHHHHH
Q 005802 510 EMGEKYFNSMTADYKISPE---TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFL--NVCRLNRNAELAGEA 583 (676)
Q Consensus 510 ~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~--~~~~~~~~~~~a~~~ 583 (676)
..|...++.|...++...+ ...|++..+.+.+.++-.--..++.... .+|+......++ ......+.+.-|+..
T Consensus 683 ~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~ 762 (895)
T KOG2076|consen 683 GDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQE 762 (895)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHH
Confidence 9999999999876444333 4566666666666666555555555444 333332222222 235677889999999
Q ss_pred HHHHHcccCCCCccHHHHHHHHHh
Q 005802 584 EEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 584 ~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
+-++...+|++|-+..+|+-++..
T Consensus 763 y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 763 YMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHH
Confidence 999999999999888888776644
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=1.7e-15 Score=144.72 Aligned_cols=256 Identities=16% Similarity=0.119 Sum_probs=115.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHH-HHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 005802 362 LFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVI-LLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKC 440 (676)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (676)
+...+.+.|++++|++++++. .....+|+...|.. +...+...++.+.|...++.+...+. .++..+..++.. ...
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~-~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKA-AQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 355666777778888777553 22222344444443 33344567777888888877776653 255566677777 688
Q ss_pred CCHHHHHHHHhhcC--CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHhHHHHHHHHhhccCcHHHHHHHHH
Q 005802 441 GNMTYAEIIFQNFI--ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKG-IKPDAVTFVAILSAFRHCGSVEMGEKYFN 517 (676)
Q Consensus 441 g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 517 (676)
+++++|.+++.... .++...+..++..+.+.++++++..++++..... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999988887664 3456677788888999999999999999987633 34567778888889999999999999999
Q ss_pred HchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 518 SMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 518 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
+..+. .|+ ......++..+...|+.+++.++++... .+.++..|..+..++...|++++|...++++.+.+|+|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99854 576 7888899999999999999888877766 35677889999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 595 KARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+.....++.++...|+.++|.++++++.+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999887653
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=1.2e-11 Score=114.91 Aligned_cols=423 Identities=10% Similarity=0.066 Sum_probs=279.6
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCC---CCCeeeHH-HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHh----HHHHHHHH
Q 005802 197 AMVAACCREGEMEMALKTFWRQPE---LNDAVSWN-TLISGYVQNGDAEEGLKLFVRMGENGVRWNEH----TFASALSA 268 (676)
Q Consensus 197 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~ 268 (676)
.|..-|.......+|+..++-+.. -||..... .+-..+.+...+..|+++|+.....-...+.. .++.+--.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 345556667778888888766543 33333221 23445778888999999999877632111222 23333345
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC----------------CCchhHHH--
Q 005802 269 CCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV----------------RNSFSISS-- 330 (676)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~-- 330 (676)
+.+.|.++.|...|+...+.. |+..+--.|+-++..-|+-+...+.|.++.. |+....+.
T Consensus 286 fiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 778999999999999988864 7766666666677778898988888887664 11122222
Q ss_pred ---HHHHHHhcC--CHHHHH----HHHhccCCCCch-------------hHHH--------HHHHHHHcCChHHHHHHHH
Q 005802 331 ---MIVGYSLQG--NMEEAR----RHFDSLTEKNVV-------------VWTA--------LFSGYVKAQNCEALFDLLS 380 (676)
Q Consensus 331 ---li~~~~~~~--~~~~a~----~~~~~~~~~~~~-------------~~~~--------li~~~~~~~~~~~a~~~~~ 380 (676)
.+.-.-+.+ +.++++ ++..-...|+.. .+.. -...+.+.|+++.|+++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 222222222 122222 222222223211 0111 1235788999999999998
Q ss_pred HHHHcCCCCCCHhHHHHHHHHHHh--hcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc
Q 005802 381 EFVTKEGVVTDALILVILLGACAL--QAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDL 458 (676)
Q Consensus 381 ~m~~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 458 (676)
-+ .....+.-+..-+.|-..+.. ..++..|.+.-....... .-++.....-.+.-...|++++|.+.|.+....|.
T Consensus 444 v~-~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 444 VF-EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HH-HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 87 554444333333333222222 334555555554444322 12222222223334567999999999999998887
Q ss_pred chHHHHHH---HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHH
Q 005802 459 VLYNVMIA---CYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACM 535 (676)
Q Consensus 459 ~~~~~l~~---~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 535 (676)
.+-.+|.. .+-..|+.++|+..|-++..- +..+...+..+.+.|....+...|++++.+... -++.|+.+...|
T Consensus 522 sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl 598 (840)
T KOG2003|consen 522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKL 598 (840)
T ss_pred HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHH
Confidence 76655543 456789999999999887653 334667777888889999999999999988753 334449999999
Q ss_pred HHHHhhcCCHHHHHHHHH-hCC-CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhH
Q 005802 536 IDLYGRANQLEKAIEFMK-SIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAE 613 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 613 (676)
.+.|-+.|+-..|.+..- ... .+-+..+..-|...|....-+++++.+++++--+.|+....-..++.++.+.|++.+
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 999999999999998754 444 555777777677777777788999999999999999876666666778888999999
Q ss_pred HHHHHHHHHhCCC
Q 005802 614 MGRIRKQMRGMKG 626 (676)
Q Consensus 614 A~~~~~~~~~~~~ 626 (676)
|.++++...++-+
T Consensus 679 a~d~yk~~hrkfp 691 (840)
T KOG2003|consen 679 AFDLYKDIHRKFP 691 (840)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999887544
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=2.6e-10 Score=106.92 Aligned_cols=426 Identities=13% Similarity=0.106 Sum_probs=269.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC--CCc-chHHHHHHHHHhcCChHHHHHHh
Q 005802 3 SLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE--RNV-FSWNTIISACIKSHDLKQARSLF 79 (676)
Q Consensus 3 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~ll~~~~~~g~~~~A~~~~ 79 (676)
++++..|..+|++.+... ..+...|-.-+.+=.+...+..|..++++... |.+ ..|--.+.+--.-|++..|+++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 467788888888888766 44566777777777888888999999888654 433 35556666667778899999999
Q ss_pred ccCC--CCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCC
Q 005802 80 DSSP--HKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSND 157 (676)
Q Consensus 80 ~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (676)
+... +|+...|++.|+.=.+.+..+ .|..+|++..- +.|+..+|..-.+.=.+.|.+..+.++++...+.-..
T Consensus 165 erW~~w~P~eqaW~sfI~fElRykeie-raR~IYerfV~----~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 165 ERWMEWEPDEQAWLSFIKFELRYKEIE-RARSIYERFVL----VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHhhHHH-HHHHHHHHHhe----ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 8754 789999999999888888888 99999998865 6788888888888888888888898888887765111
Q ss_pred --CCCchhhHHHHHhhhccchHHHHHhhh----hcCCCCchhhHHHHHHHHHhcCChhHHHHHH---hh------CCC-C
Q 005802 158 --ASGFAVSSLIDMYSKCRCYEEACRVFE----GCTEEVNLISKNAMVAACCREGEMEMALKTF---WR------QPE-L 221 (676)
Q Consensus 158 --~~~~~~~~li~~~~~~g~~~~A~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~---~~------~~~-~ 221 (676)
.....+.+....-.++..++.|.-+|. .+++......|..+...--+.|+.....+.. ++ +.. +
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 001134444444445566666666653 4444333455555555444555543333222 11 111 2
Q ss_pred CCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHh-------HHHHHHHHH---hCCCChHHHHHHHHHHHHhCCC
Q 005802 222 NDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEH-------TFASALSAC---CGLRNVKCAKEIHSWVLKNGLI 291 (676)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~ 291 (676)
-|-.+|-..++.--..|+.+...++|+.... +++|-.. .|.-+=-+| ....+++.+.++++..++. ++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 2455555566666666777777777777765 3444211 111111111 1345555566666555552 23
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 005802 292 SNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQN 371 (676)
Q Consensus 292 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (676)
...+++..+--+| ...-.+..+
T Consensus 398 HkkFtFaKiWlmy----------------------------------------------------------A~feIRq~~ 419 (677)
T KOG1915|consen 398 HKKFTFAKIWLMY----------------------------------------------------------AQFEIRQLN 419 (677)
T ss_pred cccchHHHHHHHH----------------------------------------------------------HHHHHHHcc
Confidence 3344444333222 233345556
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 005802 372 CEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQ 451 (676)
Q Consensus 372 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 451 (676)
...|.+++-. .-|..|-..+|...|..-.+.+.++.+..+++..++.+ |.+..++......-...|+.+.|..+|.
T Consensus 420 l~~ARkiLG~---AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 420 LTGARKILGN---AIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred cHHHHHHHHH---HhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6666666663 34667777777777777777777777777777777765 4556667666677777788888888877
Q ss_pred hcC-CC----CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 005802 452 NFI-ER----DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAIL 500 (676)
Q Consensus 452 ~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 500 (676)
-.. +| ....|.+.|+--...|.++.|..+++++++. .+....|..+.
T Consensus 496 lAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 496 LAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFA 547 (677)
T ss_pred HHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHH
Confidence 554 33 2335666666666778888888888888774 23333444443
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=3.2e-10 Score=106.39 Aligned_cols=480 Identities=13% Similarity=0.057 Sum_probs=284.0
Q ss_pred ccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCC-CC-chhhHHHHHHHHHhcCChhHHHHH
Q 005802 137 KLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE-EV-NLISKNAMVAACCREGEMEMALKT 214 (676)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~ 214 (676)
..+++..|..+|+..+... ..+...|-..+.+-.++..+..|..+++.... -| -...|-..+-+--..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3445555666666655542 12222455555555666666666666665433 12 122344445555556777777777
Q ss_pred Hhh-CCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHh-CC-C
Q 005802 215 FWR-QPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKN-GL-I 291 (676)
Q Consensus 215 ~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~ 291 (676)
|++ |.-.|+..+|++.|..=.+-..++.|..+|+...- +.|+..+|.-..+.-.+.|++..+..+|..+++. |- .
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 754 33367777777777776677777777777777665 4477777666666666677777777777666553 21 1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC---chhHHHHHHHHHhcCCHH---HHHHH-----HhccCCCCc--
Q 005802 292 SNPFVSSGIVDVYCKCENMNYAESMLLLKGV--RN---SFSISSMIVGYSLQGNME---EARRH-----FDSLTEKNV-- 356 (676)
Q Consensus 292 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~li~~~~~~~~~~---~a~~~-----~~~~~~~~~-- 356 (676)
.+...+.+....=.++..++.|.-+++-... |. ...|..+..---+-|+.. +++-- ++.+...|+
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 1222333333333345556666655543332 11 122333333222333332 22221 222223333
Q ss_pred -hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHh--H---HHHH-HH-HH---HhhcChhHHHHHHHHHHHcCCCC
Q 005802 357 -VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDAL--I---LVIL-LG-AC---ALQAALHPGKEIHAYILRMGVQM 425 (676)
Q Consensus 357 -~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~---~~~l-l~-~~---~~~~~~~~a~~~~~~~~~~~~~~ 425 (676)
.+|-..+..--..|+.+...++|+.. -.+++|-.. . |..| |+ +| ....+.+.+.++++..++ -+|.
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErA--Ianvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPH 398 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERA--IANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPH 398 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHH--HccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCc
Confidence 34444555555667888888888874 345555321 0 1111 11 11 245677778888887777 3455
Q ss_pred ChhHHHHHHHHH----HhcCCHHHHHHHHhhcCC--CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 005802 426 DKKLISTLVDMY----SKCGNMTYAEIIFQNFIE--RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAI 499 (676)
Q Consensus 426 ~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 499 (676)
...||.-+=-+| .++.++..|.+++...+. |...+|...|..-.+.++++.+..++++.++-+ +-|..+|...
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ky 477 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKY 477 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHH
Confidence 566665543333 467788888888887763 455677777888888888999999999988853 2256677777
Q ss_pred HHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHH-----H
Q 005802 500 LSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVCR-----L 573 (676)
Q Consensus 500 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~-----~ 573 (676)
...-...|+.+.|..+|+...+...+......|.+.|+.-...|.+++|..++++.. ..+...+|.++...-. .
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~ 557 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQ 557 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccc
Confidence 777777889999999998887653333335567777777788899999999988887 4555667777766433 2
Q ss_pred hC-----------CHhHHHHHHHHHHcccCC--CCccHHHHHHHH----HhcCChhHHHHHHHHHHh
Q 005802 574 NR-----------NAELAGEAEEKLLRLEGN--NKARYVQLANVY----AAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 574 ~~-----------~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~ 623 (676)
.+ +...|..+|+++.....+ +..--..|..+. ...|.-.+...+-.+|.+
T Consensus 558 ~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 558 EDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 33 567888999988766222 222333333333 445766666667666654
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=8.6e-12 Score=124.75 Aligned_cols=274 Identities=9% Similarity=0.064 Sum_probs=167.2
Q ss_pred CCHHHHHHHHhccCCC--Cchh-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHH--HHHHHHHhhcChhHHHH
Q 005802 339 GNMEEARRHFDSLTEK--NVVV-WTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILV--ILLGACALQAALHPGKE 413 (676)
Q Consensus 339 ~~~~~a~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~ 413 (676)
|+++.|.+.+....+. ++.. |-.......+.|+++.|...+.++ .+ ..|+..... .....+...|+++.|..
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A-~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERA-AE--LADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH-Hh--cCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 5555555555544332 1222 222233335566666666666665 22 233332222 22345556666666666
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc-----------chHHHHHHHHHHcCChhHHHHHHH
Q 005802 414 IHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDL-----------VLYNVMIACYAHHGHEEKAILLFE 482 (676)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~ 482 (676)
.++.+.+.. |.++.....+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666665554 44555666666677777777777766666653211 123333333334445555556666
Q ss_pred HHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCc
Q 005802 483 EMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEED 560 (676)
Q Consensus 483 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 560 (676)
.+-+. .+.+......+..++...|+.++|..+++...+. .|+.... ++.+....++.+++++.+++.. .+.|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 55332 2346667777778888888888888888877643 4444322 2333345588888888887776 4446
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 561 AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 561 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+..+..+...|...+++++|...++++.+..|++ ..+..|+.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6667788888888888888888888888888875 4467888888888888888888886643
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=5e-11 Score=112.20 Aligned_cols=214 Identities=14% Similarity=0.158 Sum_probs=171.3
Q ss_pred hhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHH
Q 005802 404 LQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILL 480 (676)
Q Consensus 404 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~ 480 (676)
-.|+.-.+..-++..+.....++ ..|--+..+|....+.++....|++.. +.|+.+|..-.+...-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 45677788888888887653333 336667778999999999999998775 44778898888888888999999999
Q ss_pred HHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CC
Q 005802 481 FEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TE 558 (676)
Q Consensus 481 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 558 (676)
|++.+. +.|+ ...|..+--+..+.+.+++++..|++.+.++ +-.+..|+.....+..++++++|.+.|+... ..
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999987 4564 5566666667778899999999999998753 3338889999999999999999999999877 34
Q ss_pred Cc---------HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 559 ED---------AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 559 ~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
|. +.+-..++.. .=.+++.+|+.+++++++++|.....|..|+.+..+.|+.++|+++|++-..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 43 2222222222 2338999999999999999999999999999999999999999999987643
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2.1e-12 Score=126.39 Aligned_cols=278 Identities=15% Similarity=0.075 Sum_probs=218.6
Q ss_pred CCHHHHHHHHhccCC--CCc-hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCHhHHHHHHHHHHhhcChhHHHHH
Q 005802 339 GNMEEARRHFDSLTE--KNV-VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVV-TDALILVILLGACALQAALHPGKEI 414 (676)
Q Consensus 339 ~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~ 414 (676)
-+..+|...|..+++ +|. .....+..+|...+++++|.++|+......... -+..+|.+.+..+-+. -+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 356778888888654 233 344567788999999999999999874433332 3556777777765432 22233
Q ss_pred HH-HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 005802 415 HA-YILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD---LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIK 490 (676)
Q Consensus 415 ~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 490 (676)
+. .+.+. -+..+.+|.++.++|.-+++.+.|++.|++...-| ..+|+.+..-+.....+|.|...|+..+. +.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 32 22332 36678899999999999999999999999987544 45788788888888999999999998764 23
Q ss_pred CC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHH
Q 005802 491 PD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGS 566 (676)
Q Consensus 491 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 566 (676)
|. -..|..+...|.+.++++.|.-.|++.. .+.|. ......+...+-+.|+.++|+.+++++. .+.++...-.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 32 3355567778999999999999999887 67787 6677788888999999999999999988 5557777777
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
-+..+...+++++|...+|++.+..|++...|..++.+|.+.|+.+.|+.-+--|.+..+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 777888999999999999999999999999999999999999999999998887766544
No 42
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=2.7e-10 Score=114.97 Aligned_cols=536 Identities=11% Similarity=0.006 Sum_probs=297.1
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHhccCCC----CCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhH
Q 005802 53 ERNVFSWNTIISACIKSHDLKQARSLFDSSPH----KDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTV 128 (676)
Q Consensus 53 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~ 128 (676)
.||..+|.++|..||..|+.+.|- +|..|.- -+...++.++.+..+.++.+ ..-.|.+.||
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~E--------------npkep~aDty 86 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAE--------------NPKEPLADTY 86 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccccccc--------------CCCCCchhHH
Confidence 488899999999999999999998 8888873 24456888888877777777 4457888999
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCC-chhhHHHHHHHHHhcCC
Q 005802 129 TSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEV-NLISKNAMVAACCREGE 207 (676)
Q Consensus 129 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 207 (676)
..++.+|...||+..-..+-+.+. .++..+...|--..-..++-.+.-.| ........+......|-
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~egl 154 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLE------------SINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGL 154 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHH
Confidence 999999999999877333322222 22333444444444444444322211 12223345666677888
Q ss_pred hhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005802 208 MEMALKTFWRQPELNDAVSWNTLISGYVQNGDA-EEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVL 286 (676)
Q Consensus 208 ~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (676)
++.+++++..++...-...+..+++-+.....+ ++-..+-+...+ .|++.+|..++.+....|+.+.|..++.+|.
T Consensus 155 waqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 999999998887522111222234444433332 222222222222 5999999999999999999999999999999
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhc----CCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHH
Q 005802 287 KNGLISNPFVSSGIVDVYCKCENMNYAESMLLLK----GVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTAL 362 (676)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 362 (676)
+.|++.+.+-|-.|+-+ .++..-++.+++.+ ..|+..|+...+-.+..+|....+.+..+.-..-....+..+
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAA 308 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHH
Confidence 99999999887777765 66666666655544 458888988887777775542222221111000011122333
Q ss_pred HHHHHHcCCh-----HHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCC---CChhHHHHHH
Q 005802 363 FSGYVKAQNC-----EALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQ---MDKKLISTLV 434 (676)
Q Consensus 363 i~~~~~~~~~-----~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~ 434 (676)
..+.....+. .-.+..+.+- -..|+......|..... ....|.-++..++...+..-... .+...+..++
T Consensus 309 ~rg~~a~k~l~~nl~~~v~~s~k~~-fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l 386 (1088)
T KOG4318|consen 309 CRGLLANKRLRQNLRKSVIGSTKKL-FLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL 386 (1088)
T ss_pred hcccHhHHHHHHHHHHHHHHHhhHH-HHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH
Confidence 3221111111 1122222222 12233222222322222 22356666666665555432111 1222333333
Q ss_pred HHHHhcCCHHHHHHHHh--hcCCC--CcchHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCC-------CHhHHHHH
Q 005802 435 DMYSKCGNMTYAEIIFQ--NFIER--DLVLYNVMIACYAHHGHEEKAILLFEEMLE----KGIKP-------DAVTFVAI 499 (676)
Q Consensus 435 ~~~~~~g~~~~A~~~~~--~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~g~~p-------~~~~~~~l 499 (676)
.-|.+.-+..-...++. ..... ++..-..+.....+. +...++.-+..+.. +-..| -...-+.+
T Consensus 387 rqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql 465 (1088)
T KOG4318|consen 387 RQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQL 465 (1088)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHH
Confidence 33322111100000000 00000 000111111111111 11111111111111 00111 11123445
Q ss_pred HHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-----CcHHHHHHHHHHHHHh
Q 005802 500 LSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTE-----EDAVILGSFLNVCRLN 574 (676)
Q Consensus 500 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 574 (676)
+..|++.-+..++...-+..... -+ ...|..|++.+......+.|..+..+...+ -+..-+..+.+...+.
T Consensus 466 ~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~ 541 (1088)
T KOG4318|consen 466 HLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL 541 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh
Confidence 55666666666666555554322 22 277888999999999999999888887611 2334456666777788
Q ss_pred CCHhHHHHHHHHHHcc---cCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 005802 575 RNAELAGEAEEKLLRL---EGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNR 628 (676)
Q Consensus 575 ~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 628 (676)
+....+..+++++.+. .|.-..+...+.+.....|+.+.-.+..+-+...|.-.
T Consensus 542 ~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 542 AILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8888888888877765 33334556667777777888888888888777766643
No 43
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=2.2e-08 Score=97.98 Aligned_cols=539 Identities=13% Similarity=0.115 Sum_probs=281.0
Q ss_pred CCCCCcccHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHhccCCC-----CCcccHHHHH
Q 005802 20 GLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISACIKSHDLKQARSLFDSSPH-----KDLVTYNSML 94 (676)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ll 94 (676)
+..|+...|-.+=+++ +.+.....+|+ ..|-..+..+.++|++..-+..|+.... .-...|...+
T Consensus 76 ~~~~T~~~~~~vn~c~------er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl 145 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNCF------ERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYL 145 (835)
T ss_pred ccCCCChHHHHHHHHH------HHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHH
Confidence 4445554555444443 33444444443 3555666666677777666666665331 2334566666
Q ss_pred HHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHh------cCCCCCchhhHHHH
Q 005802 95 CGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKT------SNDASGFAVSSLID 168 (676)
Q Consensus 95 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~ 168 (676)
......+-++ -++.+|.+..+ +.|.. -+.-+..+...++.++|.+.+...... ..+.+...|..+.+
T Consensus 146 ~Fv~~~~lPe-ts~rvyrRYLk----~~P~~--~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcd 218 (835)
T KOG2047|consen 146 KFVESHGLPE-TSIRVYRRYLK----VAPEA--REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCD 218 (835)
T ss_pred HHHHhCCChH-HHHHHHHHHHh----cCHHH--HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHH
Confidence 6666666666 77777766654 33333 555566666666666666666555432 11222334555555
Q ss_pred HhhhccchHH---HHHhhhhcCC---CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC-CCCeeeHHHHHHHHHhcCC--
Q 005802 169 MYSKCRCYEE---ACRVFEGCTE---EVNLISKNAMVAACCREGEMEMALKTFWRQPE-LNDAVSWNTLISGYVQNGD-- 239 (676)
Q Consensus 169 ~~~~~g~~~~---A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~-- 239 (676)
..++.-+.-. ...++..+.. +.-...|.+|.+-|.+.|.+++|..++++... .-++..|..+.++|++-..
T Consensus 219 lis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~ 298 (835)
T KOG2047|consen 219 LISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESC 298 (835)
T ss_pred HHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHH
Confidence 4444322221 1222332222 11234566666777777777777766655331 2233444444444443211
Q ss_pred --------------------hhHHHHHHHHHHhCCC-----------CCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005802 240 --------------------AEEGLKLFVRMGENGV-----------RWNEHTFASALSACCGLRNVKCAKEIHSWVLKN 288 (676)
Q Consensus 240 --------------------~~~a~~~~~~m~~~g~-----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (676)
++-.+.-|+.+...+. +-+..++..-. -...|+..+....+.++++.
T Consensus 299 ~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~ 376 (835)
T KOG2047|consen 299 VAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT 376 (835)
T ss_pred HHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc
Confidence 1111112222221110 00011111000 01123333333333333332
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCHHHHHHHHhccCCCCch-------hH
Q 005802 289 GLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVR--NSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVV-------VW 359 (676)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------~~ 359 (676)
- .| ...+ -...|..+...|-..|+++.|..+|++..+-+-. +|
T Consensus 377 v-dP---------------------------~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw 428 (835)
T KOG2047|consen 377 V-DP---------------------------KKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVW 428 (835)
T ss_pred c-Cc---------------------------ccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHH
Confidence 0 11 0000 1123444555555555555555666655542222 22
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCC-----------CC------CHhHHHHHHHHHHhhcChhHHHHHHHHHHHcC
Q 005802 360 TALFSGYVKAQNCEALFDLLSEFVTKEGV-----------VT------DALILVILLGACALQAALHPGKEIHAYILRMG 422 (676)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----------~p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 422 (676)
-.....=.+..+++.|+++.+.. ..-.- ++ +...+...+..--..|-++....+++.+.+..
T Consensus 429 ~~waemElrh~~~~~Al~lm~~A-~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 429 CAWAEMELRHENFEAALKLMRRA-THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhh-hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 22223333445555565555543 11100 01 12234444444456677888888999998877
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCcc-hHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHh
Q 005802 423 VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE----RDLV-LYNVMIACYAH---HGHEEKAILLFEEMLEKGIKPDAV 494 (676)
Q Consensus 423 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~ 494 (676)
+. ++.+.....-.+-...-++++.+++++-+. |++. .|+..+.-+.+ ....+.|..+|++..+ |++|...
T Consensus 508 ia-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 508 IA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred cC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 53 333333333344556678999999998752 3432 67776665554 3468999999999999 7777655
Q ss_pred HHHHHHHH--hhccCcHHHHHHHHHHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHH-
Q 005802 495 TFVAILSA--FRHCGSVEMGEKYFNSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFL- 568 (676)
Q Consensus 495 ~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~- 568 (676)
-+..|+-+ -.+.|....|+.++++... ++++. ...|+.+|.--...=-...-..+++++. .-|+...-...+
T Consensus 586 KtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclr 663 (835)
T KOG2047|consen 586 KTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLR 663 (835)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHH
Confidence 44334322 2356889999999999854 55555 5677777654333222233334444443 234444333333
Q ss_pred --HHHHHhCCHhHHHHHHHHHHcc-cCC-CCccHHHHHHHHHhcCC
Q 005802 569 --NVCRLNRNAELAGEAEEKLLRL-EGN-NKARYVQLANVYAAEGN 610 (676)
Q Consensus 569 --~~~~~~~~~~~a~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~ 610 (676)
..-.+.|..++|..++...-+. +|. +...|.+.-.--.+.||
T Consensus 664 FAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 664 FADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 3456889999999999999888 444 45667777777788888
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=8e-12 Score=122.39 Aligned_cols=251 Identities=14% Similarity=0.155 Sum_probs=198.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCHHHHH
Q 005802 370 QNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGV--QMDKKLISTLVDMYSKCGNMTYAE 447 (676)
Q Consensus 370 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 447 (676)
=+..+|+..|.+. .. .+.-+......+-.+|...+++++++.+|+.+.+... --+..+|.+.+--+-+.=.+..--
T Consensus 333 y~~~~A~~~~~kl-p~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 333 YNCREALNLFEKL-PS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHhh-HH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 3567899999884 33 2333446777788899999999999999999987641 235567776665543322222222
Q ss_pred HHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCC
Q 005802 448 IIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKIS 526 (676)
Q Consensus 448 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 526 (676)
+-+-++-+..+.+|.++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... ++.
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~ 485 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVD 485 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCC
Confidence 222233345778999999999999999999999999998 566 56788877777888899999999999886 555
Q ss_pred CC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHH
Q 005802 527 PE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLAN 603 (676)
Q Consensus 527 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 603 (676)
|+ -..|-.|.-.|.++++++.|+-.|+++. ..| +.+....++..+.+.|+.++|+++++++.-++|.|+-.-+..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 55 4455567888999999999999999998 555 56667777788999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCc
Q 005802 604 VYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
++...+++++|+..++++++.-++
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcc
Confidence 999999999999999999986543
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=6.3e-11 Score=118.57 Aligned_cols=209 Identities=15% Similarity=0.106 Sum_probs=139.2
Q ss_pred HHHhccCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcC
Q 005802 346 RHFDSLTE---KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMG 422 (676)
Q Consensus 346 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 422 (676)
..++++.+ .++..+..+...|.+.|++++|.+++..+ .+.+..++. ....+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l-~k~~~~~~~-~~~~l~----------------------- 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSM-AKAHVGDEE-HRAMLE----------------------- 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHcCCCCHH-HHHHHH-----------------------
Confidence 55444443 24455666777777778888888888777 433322211 111000
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 005802 423 VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAI 499 (676)
Q Consensus 423 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 499 (676)
...+..++.......+.+...++++.++ +.++.....+...+...|+.++|.+++++..+. .|+.... +
T Consensus 229 ----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~ 300 (398)
T PRK10747 229 ----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--L 300 (398)
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--H
Confidence 0011112222222334455566666665 236667777888888889999999988888773 4454322 3
Q ss_pred HHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhCCH
Q 005802 500 LSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNA 577 (676)
Q Consensus 500 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 577 (676)
+.+....++.+++.+..+...++ .|+ ...+.++...+.+.|++++|.+.|+... ..|+...+..+..++...|+.
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Confidence 33444568889999999888754 344 6677788899999999999999998887 678888888888899999999
Q ss_pred hHHHHHHHHHHcc
Q 005802 578 ELAGEAEEKLLRL 590 (676)
Q Consensus 578 ~~a~~~~~~~~~~ 590 (676)
++|..++++...+
T Consensus 378 ~~A~~~~~~~l~~ 390 (398)
T PRK10747 378 EEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988765
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=3.7e-11 Score=120.93 Aligned_cols=278 Identities=11% Similarity=0.088 Sum_probs=155.1
Q ss_pred cCCHHHHHHHHhccCC--CCc-hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHh--HHHHHHHHHHhhcChhHHH
Q 005802 338 QGNMEEARRHFDSLTE--KNV-VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDAL--ILVILLGACALQAALHPGK 412 (676)
Q Consensus 338 ~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~ 412 (676)
.|+++.|.+.+.+..+ |++ ..+-....+..+.|+++.|.+.+.+. .+. .|+.. ............|+++.|.
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a-~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEA-AEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3444444455544433 221 12223334455556666666666554 221 12221 2222344445556666666
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHH----HHHHHHHcCChhHHHHHHHHHH
Q 005802 413 EIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIER---DLVLYNV----MIACYAHHGHEEKAILLFEEML 485 (676)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----l~~~~~~~~~~~~A~~~~~~m~ 485 (676)
..++.+.+.. |-++.+...+...+.+.|+++.|.+.+..+.+. +...+.. ........+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666655554 344455556666666666666666666655532 1111211 1111122222233333444444
Q ss_pred HCCC---CCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHH---HHHHHHHHhhcCCHHHHHHHHHhCC--C
Q 005802 486 EKGI---KPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDH---YACMIDLYGRANQLEKAIEFMKSIP--T 557 (676)
Q Consensus 486 ~~g~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~ 557 (676)
+... +.+...+..+...+...|+.++|.+.+++..++ .|+... ...........++.+.+.+.+++.. .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4321 125666777777788888888888888877754 344221 1111122233467777777777665 3
Q ss_pred CCcH--HHHHHHHHHHHHhCCHhHHHHHHH--HHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 558 EEDA--VILGSFLNVCRLNRNAELAGEAEE--KLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 558 ~~~~--~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+.++ ....++++.|.+.|++++|.+.++ .+.+..|++. .+.+|+.++.+.|+.++|.+++++...
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455 667788888888888888888888 4666677644 466888999999999999888887543
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.5e-10 Score=109.78 Aligned_cols=265 Identities=11% Similarity=0.062 Sum_probs=207.1
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 005802 355 NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLV 434 (676)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 434 (676)
++........-+...+++.+..++..+.+...+..++...+ -|.++...|+...-..+-..+.+. .|..+.+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~--~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPL--HIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHH--HHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 33444455566778899999999999976665555554444 344666777766665555566654 467788899999
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHH
Q 005802 435 DMYSKCGNMTYAEIIFQNFIERD---LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEM 511 (676)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 511 (676)
-.|...|+.++|.+.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+..+..-|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 99999999999999999876433 458999999999999999999998877662 11122223334556888999999
Q ss_pred HHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCC----cHHHHHHHHHHHHHhCCHhHHH
Q 005802 512 GEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-----TEE----DAVILGSFLNVCRLNRNAELAG 581 (676)
Q Consensus 512 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~~l~~~~~~~~~~~~a~ 581 (676)
|.++|.+.. ++.|+ +..++-+.-.....+.+.+|..+|+... ..+ -..+++.|+-+|++.+.+++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999886 77777 7788888888888999999999998776 111 3346788888999999999999
Q ss_pred HHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 582 EAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 582 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
..+++++.+.|.++.+|..++-+|...|+++.|.+.+.+.....+
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999988875444
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.6e-10 Score=105.86 Aligned_cols=317 Identities=13% Similarity=0.095 Sum_probs=181.8
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhH-HHHHHHHHHcCChHHHHHHH
Q 005802 301 VDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVW-TALFSGYVKAQNCEALFDLL 379 (676)
Q Consensus 301 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~ 379 (676)
...+.+.|..+.|+..|......-+..|.+.+....-..+.+.+..+...+...+...- --+..++....+.++++.-.
T Consensus 171 Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~ 250 (559)
T KOG1155|consen 171 GVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKK 250 (559)
T ss_pred HHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555444444444444433333333333333333322111110 11223344444555555555
Q ss_pred HHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 005802 380 SEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGV--QMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD 457 (676)
Q Consensus 380 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 457 (676)
... ...|++-+...-+....+.-...++++|..+|+.+.+... -.|..+|+.++-.--.+.++.---.....+.+--
T Consensus 251 e~l-~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR 329 (559)
T KOG1155|consen 251 ERL-SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYR 329 (559)
T ss_pred HHH-HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCC
Confidence 554 4444444444444444444466677777777777776531 1234455544433322222222222222333334
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHH
Q 005802 458 LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACM 535 (676)
Q Consensus 458 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 535 (676)
+.|...+.+-|.-.++.+.|...|++..+. .|. ...|+.+..-|....+...|.+-++... .+.|. -..|-.|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~DyRAWYGL 404 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDYRAWYGL 404 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhHHHHhhh
Confidence 455566666666777777777777777763 344 3455556666777777777777777776 34443 6677777
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhH
Q 005802 536 IDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAE 613 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 613 (676)
..+|.-.+...-|+-+|+++. .+.|+..|.+|+.+|.+.++.++|+..|+++......+..++..|+++|.+.++.++
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 777777777777777777776 444677777777777777777777777777777766666777777777777777777
Q ss_pred HHHHHHHHHh
Q 005802 614 MGRIRKQMRG 623 (676)
Q Consensus 614 A~~~~~~~~~ 623 (676)
|...+++-.+
T Consensus 485 Aa~~yek~v~ 494 (559)
T KOG1155|consen 485 AAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3e-09 Score=99.85 Aligned_cols=347 Identities=15% Similarity=0.076 Sum_probs=213.6
Q ss_pred HHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeH-HHHHHHHHhcCChhHHHHH
Q 005802 168 DMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSW-NTLISGYVQNGDAEEGLKL 246 (676)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~ 246 (676)
..+-+.|....|...|..... .-+..|.+-+....-..+.+.+..+....+ ..+...- -.+..++-...+.++++.-
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~-~~P~~W~AWleL~~lit~~e~~~~l~~~l~-~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVN-RYPWFWSAWLELSELITDIEILSILVVGLP-SDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHh-cCCcchHHHHHHHHhhchHHHHHHHHhcCc-ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888877765443 123445554444444455555544443333 1111111 1233455566678888888
Q ss_pred HHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCC
Q 005802 247 FVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGL--ISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRN 324 (676)
Q Consensus 247 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 324 (676)
.......|++.+...-+....+.....|+++|+.+|+++.+..+ -.|..+|+.++-.-..+....---...-.+.+--
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR 329 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYR 329 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCC
Confidence 88888888855555444445555678899999999999998853 2366677766543332222222122222233334
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhccCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHH
Q 005802 325 SFSISSMIVGYSLQGNMEEARRHFDSLTEKN---VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGA 401 (676)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~ 401 (676)
+.|.-.+.+-|...++.++|...|++..+-| ...|+.+.+-|....+...|+.-++..+ .-.+-|-..|-.+-++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv--di~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV--DINPRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH--hcCchhHHHHhhhhHH
Confidence 5566666777777888888888888776533 4567778888888888888888888752 2234466677777777
Q ss_pred HHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHH
Q 005802 402 CALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAI 478 (676)
Q Consensus 402 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 478 (676)
|.-.+...-|.-.+++..... |.|..++.+|.++|.+.++.++|.+.|..... .+...+..|.+.|-+.++..+|.
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 777777777777777777654 56677777777777777777777777776552 23356777777777777777777
Q ss_pred HHHHHHHH----CCCCCC--HhHHHHHHHHhhccCcHHHHHHHHHHc
Q 005802 479 LLFEEMLE----KGIKPD--AVTFVAILSAFRHCGSVEMGEKYFNSM 519 (676)
Q Consensus 479 ~~~~~m~~----~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~ 519 (676)
+.|++.++ .|..-+ ......|..-+.+.+++++|..+....
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 77666554 222222 111222334455666666666655544
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.43 E-value=3.7e-13 Score=128.65 Aligned_cols=227 Identities=15% Similarity=0.160 Sum_probs=106.2
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcC
Q 005802 397 ILLGACALQAALHPGKEIHAYILRMG-VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIER---DLVLYNVMIACYAHHG 472 (676)
Q Consensus 397 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 472 (676)
.+...+...|++++|..++....... .+.+...+..+.......++++.|.+.++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44667788999999999996655444 3556666777778888899999999999998744 44567777777 7899
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 005802 473 HEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFM 552 (676)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 552 (676)
++++|.+++++..+. .++...+..++..+...++++++..+++.+.......++...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887664 356677778888899999999999999998754344567888999999999999999999999
Q ss_pred HhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 553 KSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 553 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
+++. .|.++.....+++.+...|+.+++..+++...+..|+++..+..++.+|...|+.++|...+++..+..+
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9998 4556888999999999999999999999999998899999999999999999999999999999987555
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.43 E-value=7.3e-10 Score=111.61 Aligned_cols=146 Identities=13% Similarity=0.043 Sum_probs=107.7
Q ss_pred HHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHH---HHHHHHhhccCcHHHHHHHH
Q 005802 443 MTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTF---VAILSAFRHCGSVEMGEKYF 516 (676)
Q Consensus 443 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~ 516 (676)
.+...+.+...++ .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 3444555555553 36778888888999999999999999999885 3444321 11222234457888899999
Q ss_pred HHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh--CC-CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 517 NSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKS--IP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 517 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
+...+...-.|+.....++...+.+.|++++|.+.|+. .. ..|++..+..+...+.+.|+.++|.+++++....
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88875432222226677899999999999999999994 33 6788888889999999999999999999998655
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=1.6e-09 Score=100.14 Aligned_cols=287 Identities=16% Similarity=0.109 Sum_probs=185.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 005802 237 NGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESM 316 (676)
Q Consensus 237 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 316 (676)
.|+|..|.++..+-.+.+-.| ...|.....+.-..|+.+.+..++.++.+....++..+.-.........|+.+.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~-- 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR-- 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH--
Confidence 577888888887776665443 34455566667778888888888877777644455555555566666666666665
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhcc---CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHh
Q 005802 317 LLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSL---TEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDAL 393 (676)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 393 (676)
.-++++ ...++........+|.+.|++.....++.+| .+.+.-.++.
T Consensus 174 -----------------------------~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L-~ka~~l~~~e 223 (400)
T COG3071 174 -----------------------------ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL-RKAGLLSDEE 223 (400)
T ss_pred -----------------------------HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH-HHccCCChHH
Confidence 333333 3346667777888888888888888888888 6665544432
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHH
Q 005802 394 ILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAH 470 (676)
Q Consensus 394 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 470 (676)
.- .+ ...++..+++-....+..+.-...|++.+ +.++..-.+++.-+.+
T Consensus 224 ~~-----------------~l-----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~ 275 (400)
T COG3071 224 AA-----------------RL-----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR 275 (400)
T ss_pred HH-----------------HH-----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH
Confidence 11 10 11233334443333444444445666665 3356666677777788
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 005802 471 HGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIE 550 (676)
Q Consensus 471 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 550 (676)
.|+.++|.++.++..+++..|+ . ...-.+.+-++.+.-++..+.....++-.| ..+.+|...|.+.+.+.+|.+
T Consensus 276 l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~ 349 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASE 349 (400)
T ss_pred cCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888888877776665 1 122245666777777777776665544444 666677777777777777777
Q ss_pred HHHhCC-CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 551 FMKSIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 551 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
.|+... ..|+..++.-+..++...|+.+.|.+..+++..+
T Consensus 350 ~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 350 ALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 777665 6677777777777777777777777777776644
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=2.5e-10 Score=101.97 Aligned_cols=301 Identities=11% Similarity=0.120 Sum_probs=197.3
Q ss_pred CCHHHHHHHHhccCCCCchhH---HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHh--HHHHHHHHHHhhcChhHHHH
Q 005802 339 GNMEEARRHFDSLTEKNVVVW---TALFSGYVKAQNCEALFDLLSEFVTKEGVVTDAL--ILVILLGACALQAALHPGKE 413 (676)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~ 413 (676)
++.++|.++|-+|.+.|+.++ -+|.+.|.+.|..+.|+.+-+.++...+...+.. ....|..-|...|-++.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 455555566666655444433 3455566666666666666666533333222221 23334455666677777777
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc--------hHHHHHHHHHHcCChhHHHHHHHHHH
Q 005802 414 IHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLV--------LYNVMIACYAHHGHEEKAILLFEEML 485 (676)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~m~ 485 (676)
+|..+.+.+ ..-......|+..|-...+|++|.++-.++.+.+.. .|.-|...+....+.+.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 776666543 223344556777788888888887776655433222 34445555566788899999999888
Q ss_pred HCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcH
Q 005802 486 EKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDA 561 (676)
Q Consensus 486 ~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 561 (676)
+.+ |+ ...-..+.+.....|+++.|.+.++...+. .|+ ..+...|..+|...|+.++...++.++. ..+..
T Consensus 208 qa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 208 QAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred hhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 754 33 333334557788899999999999998765 344 6778888999999999999999988876 55555
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH--HhcCChhHHHHHHHHHHhCCCcccCceeEEEEcC
Q 005802 562 VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY--AAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEH 639 (676)
Q Consensus 562 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (676)
.....+...-....-.+.|...+.+-+...|+--..|..+..-. ...|.+.+....++.|....++..|.+....++-
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF 362 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGF 362 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCC
Confidence 55555555544555566777777777777776444443333222 2356789999999999998888888888888877
Q ss_pred EEEEEE
Q 005802 640 EIHIFT 645 (676)
Q Consensus 640 ~~~~~~ 645 (676)
..+.+.
T Consensus 363 ~a~~l~ 368 (389)
T COG2956 363 TAHTLY 368 (389)
T ss_pred cceeee
Confidence 766554
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.4e-09 Score=102.66 Aligned_cols=219 Identities=10% Similarity=0.005 Sum_probs=172.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 005802 366 YVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTY 445 (676)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 445 (676)
+.-.|+..+|..-|+..+....-.++. |..+...|....+.++....|+...+.+ +.++.+|..-..++.-.++++.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l--yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL--YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH--HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 344688889999998874333222222 6667778889999999999999999877 6677888888888889999999
Q ss_pred HHHHHhhcCCC---CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhh
Q 005802 446 AEIIFQNFIER---DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTAD 522 (676)
Q Consensus 446 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 522 (676)
|..-|++.+.- ++..|-.+..+..+.+++++++..|++.+.+ ++--+..|+.....+...++++.|.+.|+....
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 99999988744 5556777777777889999999999999886 455578899999999999999999999998863
Q ss_pred cCCCCC---------HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHccc
Q 005802 523 YKISPE---------TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLE 591 (676)
Q Consensus 523 ~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 591 (676)
+.|+ +.+...++..-.+ +++..|+.+++++. .+.....+.++...-.+.|+.++|+++|++...+.
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred --hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3443 2222233333233 89999999999988 44466788999999999999999999999998774
Q ss_pred C
Q 005802 592 G 592 (676)
Q Consensus 592 p 592 (676)
.
T Consensus 568 r 568 (606)
T KOG0547|consen 568 R 568 (606)
T ss_pred H
Confidence 3
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=9.8e-10 Score=101.47 Aligned_cols=277 Identities=14% Similarity=0.142 Sum_probs=200.7
Q ss_pred cCCHHHHHHHHhccCCC---CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHH
Q 005802 338 QGNMEEARRHFDSLTEK---NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEI 414 (676)
Q Consensus 338 ~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 414 (676)
.|++.+|+++..+..+. ....|..-..+--+.|+.+.+-.++.+. .+..-.++.....+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~ea-ae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEA-AELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 35666666776665442 2234444455666677788888877776 4443344555555566666777777777777
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-----------cchHHHHHHHHHHcCChhHHHHHHHH
Q 005802 415 HAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD-----------LVLYNVMIACYAHHGHEEKAILLFEE 483 (676)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~ 483 (676)
...+.+.+ +-++........+|.+.|++.....++.++.+.. ..+|+.+++-....+..+.-...|++
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777765 5556677777888888888888888888776542 23677777777777777776667776
Q ss_pred HHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcH
Q 005802 484 MLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDA 561 (676)
Q Consensus 484 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~ 561 (676)
.-.. .+-++..-..++.-+.+.|+.++|.++.++..++ +..|+. +..-...+-++.+.-++..++.. .+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6553 4556667777888899999999999999998876 666662 12233445666666555555544 45566
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 562 VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 562 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
..+.+|+..|.+++.+.+|...++.+++..|+ ...|..+++++.+.|+..+|.+..++..-
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 88999999999999999999999999988875 68899999999999999999999988763
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=1.2e-10 Score=108.84 Aligned_cols=197 Identities=16% Similarity=0.104 Sum_probs=160.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAF 503 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 503 (676)
...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566777888888888888888887652 245577778888999999999999999988753 33456677778888
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHH
Q 005802 504 RHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAG 581 (676)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 581 (676)
...|++++|...++..............+..+...+...|++++|.+.+++.. .+.+...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999987541222235677788899999999999999998877 3445667888888999999999999
Q ss_pred HHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 582 EAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 582 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
..++++.+..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999988888888889999999999999999998887653
No 57
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.36 E-value=1.8e-08 Score=99.79 Aligned_cols=519 Identities=14% Similarity=0.132 Sum_probs=239.0
Q ss_pred hCCCchHHHHHhccCCC-CCc-chHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCCChhHHHHHHHHh
Q 005802 37 KHNLLRESRKLFDEMPE-RNV-FSWNTIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEM 114 (676)
Q Consensus 37 ~~g~~~~a~~~~~~~~~-~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 114 (676)
..|+++.|...++.... |+. ..|..+.......|++--|.++|.. |.-.++.+... +..++-++.
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaa------------i~dvak~r~lh-d~~eiadea 522 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAA------------IGDVAKARFLH-DILEIADEA 522 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHH------------HHHHHHHHHHH-HHHHHHHHH
Confidence 44666666666666543 444 3566666666666666666655532 11112222222 333333333
Q ss_pred HhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhh
Q 005802 115 QSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLIS 194 (676)
Q Consensus 115 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 194 (676)
...-.|--.+-+-...++. .-.+++..|+.+|-+ .......|..|-...+|++|+.+.+....+.-...
T Consensus 523 s~~~ggdgt~fykvra~la--il~kkfk~ae~ifle---------qn~te~aigmy~~lhkwde~i~lae~~~~p~~ekl 591 (1636)
T KOG3616|consen 523 SIEIGGDGTDFYKVRAMLA--ILEKKFKEAEMIFLE---------QNATEEAIGMYQELHKWDEAIALAEAKGHPALEKL 591 (1636)
T ss_pred hHhhCCCCchHHHHHHHHH--HHHhhhhHHHHHHHh---------cccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHH
Confidence 2110111111111112222 222345555555422 11234456667777788888877765544333445
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCC
Q 005802 195 KNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRN 274 (676)
Q Consensus 195 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 274 (676)
..+.+.++...|+-++|-++-..-+ .+ -+.|..|.+.|.+-.|......=.. +..|......+..++.+..-
T Consensus 592 k~sy~q~l~dt~qd~ka~elk~sdg-----d~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~el 663 (1636)
T KOG3616|consen 592 KRSYLQALMDTGQDEKAAELKESDG-----DG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGEL 663 (1636)
T ss_pred HHHHHHHHHhcCchhhhhhhccccC-----cc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHH
Confidence 5677777777888777766532222 12 3456778888888777655432111 23455555555555555555
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhH-HHHHHHHHhcCCHHHHHHHHhccCC
Q 005802 275 VKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSI-SSMIVGYSLQGNMEEARRHFDSLTE 353 (676)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~ 353 (676)
++.|-.+|+++.. +..-+.+|.+..-+.+|.++-+..-...+++. ......+...|+++.|+.-|-+...
T Consensus 664 ydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~ 734 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC 734 (1636)
T ss_pred HHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh
Confidence 5555555544321 11122333333333333333222211111111 1111223333444444444332211
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHH
Q 005802 354 KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTL 433 (676)
Q Consensus 354 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 433 (676)
.--.+.+-....+|.+|+.+++.+ +... .-...|..+...|+..|+++.|+++|-+. ..++--
T Consensus 735 -----~~kaieaai~akew~kai~ildni-qdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~da 797 (1636)
T KOG3616|consen 735 -----LIKAIEAAIGAKEWKKAISILDNI-QDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDA 797 (1636)
T ss_pred -----HHHHHHHHhhhhhhhhhHhHHHHh-hhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHH
Confidence 011223333444555555555443 2221 12223444444555555555555544321 123334
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC--CcchHHHHH--------------------------HHHHHcCChhHHHHHHHHHH
Q 005802 434 VDMYSKCGNMTYAEIIFQNFIER--DLVLYNVMI--------------------------ACYAHHGHEEKAILLFEEML 485 (676)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~--------------------------~~~~~~~~~~~A~~~~~~m~ 485 (676)
|.+|.+.|++++|.++-.+...| ..+.|-+-. .+|-++|..+..+.+.++-
T Consensus 798 i~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~- 876 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKH- 876 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHh-
Confidence 45555555555555555444433 222333333 3444444444444444332
Q ss_pred HCCCCCC--HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC----
Q 005802 486 EKGIKPD--AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEE---- 559 (676)
Q Consensus 486 ~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---- 559 (676)
.|+ ..|...+..-+...|+...|...|-+.. -|.+-+.+|...+.|++|..+-+.-....
T Consensus 877 ----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~ 942 (1636)
T KOG3616|consen 877 ----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKH 942 (1636)
T ss_pred ----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHH
Confidence 122 2334444555555666666665554331 14445566666666666666654433000
Q ss_pred cHHHHH------HHHHHHHHhC-------------CHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHH
Q 005802 560 DAVILG------SFLNVCRLNR-------------NAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 560 ~~~~~~------~l~~~~~~~~-------------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
-...|. ..+..+.++| .++-|..+.+-+.+ ..-+..+..++.-+...|++++|.+.+-+
T Consensus 943 v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyve 1020 (1636)
T KOG3616|consen 943 VAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVE 1020 (1636)
T ss_pred HHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHH
Confidence 011111 1111222333 33333333333322 23356788888889999999999988887
Q ss_pred HHhCCCcccC
Q 005802 621 MRGMKGNRFA 630 (676)
Q Consensus 621 ~~~~~~~~~~ 630 (676)
..+.+.-...
T Consensus 1021 aiklntynit 1030 (1636)
T KOG3616|consen 1021 AIKLNTYNIT 1030 (1636)
T ss_pred Hhhcccccch
Confidence 7776654433
No 58
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=4.9e-08 Score=88.56 Aligned_cols=448 Identities=13% Similarity=0.063 Sum_probs=252.3
Q ss_pred HHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhc
Q 005802 94 LCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKC 173 (676)
Q Consensus 94 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 173 (676)
+.-+....++. .|+.+++--.. .+-.-...+-.-+...+...|++++|..++..+.+. -.+++..+..|..++.-.
T Consensus 29 Ledfls~rDyt-GAislLefk~~--~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 29 LEDFLSNRDYT-GAISLLEFKLN--LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHHhcccch-hHHHHHHHhhc--cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHH
Confidence 44455667888 88888876543 111111122223344557899999999999988774 566677788888888889
Q ss_pred cchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 174 RCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGEN 253 (676)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 253 (676)
|.+.+|..+.++.++ ++.....+.....+.|+-++-..+-..+.. . ...--+|....--.-.+++|+++|.+....
T Consensus 105 g~Y~eA~~~~~ka~k--~pL~~RLlfhlahklndEk~~~~fh~~LqD-~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPK--TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-T-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-h-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999888655 344445556666777887777766666652 1 111222333333344689999999998874
Q ss_pred CCCCcHhHHHHHHH-HHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCChHHHH--HHHHhcCCCCchhH
Q 005802 254 GVRWNEHTFASALS-ACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCK--CENMNYAE--SMLLLKGVRNSFSI 328 (676)
Q Consensus 254 g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~--~~~~~~~~~~~~~~ 328 (676)
+ |+-...+.-+. +|.+..-++-+.+++.--.+. ++.++...|....-..+ .|+..+.+ ++.+.+.+.
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----- 252 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----- 252 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----
Confidence 3 44444444443 455677777777777766654 22333334433333333 23332222 111111110
Q ss_pred HHHHHHHHhc-----CCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHH
Q 005802 329 SSMIVGYSLQ-----GNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACA 403 (676)
Q Consensus 329 ~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 403 (676)
-..+.-+++. .+-+.|.+++-.+.+.-+..--.|+--|.+.+++.+|..+.+++ ....|-......+..+
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl---~PttP~EyilKgvv~a-- 327 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL---DPTTPYEYILKGVVFA-- 327 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc---CCCChHHHHHHHHHHH--
Confidence 1112222222 23455555555554433334444555677788888888877764 2333333332222221
Q ss_pred hhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CcchHHHHHHHHHHcCChhHHH
Q 005802 404 LQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIER-----DLVLYNVMIACYAHHGHEEKAI 478 (676)
Q Consensus 404 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~ 478 (676)
..|+ -......+.-|.+.|+-+-.. ...--.++...+.-..++++.+
T Consensus 328 alGQ----------------------------e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 328 ALGQ----------------------------ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred Hhhh----------------------------hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 1111 111111223333333332211 1223344455555556677777
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHH-HHHHHHhhcCCHHHHHHHHHhCCC
Q 005802 479 LLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYA-CMIDLYGRANQLEKAIEFMKSIPT 557 (676)
Q Consensus 479 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 557 (676)
-.++.+..--..-|...| .+.++.+..|.+.+|.++|-++... .+ .|..+|. .|.++|.+.+.++-|++++-++..
T Consensus 380 ~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t 456 (557)
T KOG3785|consen 380 TYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT 456 (557)
T ss_pred HHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC
Confidence 777666654222233333 4667777888888888888777422 22 2344443 566788888888888888877764
Q ss_pred CCcHHHHHHH-HHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 558 EEDAVILGSF-LNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 558 ~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
+.+..++..+ .+-|.+.+.+=-|-+.|..+..++|.
T Consensus 457 ~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 457 PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 4444444433 34688888888888888887777775
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.34 E-value=2.5e-07 Score=90.77 Aligned_cols=521 Identities=11% Similarity=0.079 Sum_probs=266.1
Q ss_pred ccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHH
Q 005802 88 VTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLI 167 (676)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 167 (676)
..|-..+..+..+|+.. .....|+....+ -.+.--...|...++.....+-++.+..+++..++.. +..-...|
T Consensus 103 RIwl~Ylq~l~~Q~~iT-~tR~tfdrALra-LpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyi 176 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLIT-RTRRTFDRALRA-LPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYI 176 (835)
T ss_pred HHHHHHHHHHHhcchHH-HHHHHHHHHHHh-CchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHH
Confidence 34555555566666666 666666665542 2222233355666666666666666666666666552 12245556
Q ss_pred HHhhhccchHHHHHhhhhcCC---------CCchhhHHHHHHHHHhcCCh---hHHHHHHhhCCC-CCC--eeeHHHHHH
Q 005802 168 DMYSKCRCYEEACRVFEGCTE---------EVNLISKNAMVAACCREGEM---EMALKTFWRQPE-LND--AVSWNTLIS 232 (676)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~~~--~~~~~~li~ 232 (676)
..+++.+++++|.+.+..... +.+...|.-+.+..++.-+. -....+++.+.. -+| ...|.+|.+
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 666666666666666655443 12222333333333332111 111222222221 111 123555555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHh--cCC
Q 005802 233 GYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVL-KNGLISNPFVSSGIVDVYCK--CEN 309 (676)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~--~g~ 309 (676)
.|++.|.++.|.++|++.... ..+..-|..+.++|+.-..-..+..+= ... +.+-.-+.......+..+-. .+.
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 555555555555555554442 123344444444443322111111100 000 00100011111100000000 000
Q ss_pred hHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCC---C----C--chhHHHHHHHHHHcCChHHHHHHHH
Q 005802 310 MNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTE---K----N--VVVWTALFSGYVKAQNCEALFDLLS 380 (676)
Q Consensus 310 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~----~--~~~~~~li~~~~~~~~~~~a~~~~~ 380 (676)
.-..-.++-+-...++..|..-+ -+..|+..+-...+.+... | + ...|..+...|-..|+.+.|..+|+
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 00000000000011122222221 2234555555555555432 1 1 2357888888999999999999998
Q ss_pred HHHHcCCCCCCH----hHHHHHHHHHHhhcChhHHHHHHHHHHHcC-----------CCC------ChhHHHHHHHHHHh
Q 005802 381 EFVTKEGVVTDA----LILVILLGACALQAALHPGKEIHAYILRMG-----------VQM------DKKLISTLVDMYSK 439 (676)
Q Consensus 381 ~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~l~~~~~~ 439 (676)
+. ..-.. +.. .+|......-.+..+++.|..+++.+.-.. .++ +..++...++....
T Consensus 412 ka-~~V~y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 412 KA-TKVPY-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred Hh-hcCCc-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 85 22221 221 233333333445667777777776654321 111 22344555666667
Q ss_pred cCCHHHHHHHHhhcCCCCcchHHHH---HHHHHHcCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHhh---ccCcHHHH
Q 005802 440 CGNMTYAEIIFQNFIERDLVLYNVM---IACYAHHGHEEKAILLFEEMLEKGIKPDA-VTFVAILSAFR---HCGSVEMG 512 (676)
Q Consensus 440 ~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~---~~g~~~~a 512 (676)
.|-++....+++++..--+.|=..+ ...+-.+.-++++.+++++-+..=-.|+. ..|+..+.-+. ....++.|
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 7888888888888874432222222 22334566788999888876664334443 24555554433 23578999
Q ss_pred HHHHHHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHH----HHHHHHHHHHHhCCHhHHHHHHHH
Q 005802 513 EKYFNSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAV----ILGSFLNVCRLNRNAELAGEAEEK 586 (676)
Q Consensus 513 ~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~ 586 (676)
..+|++..+ +.+|. ...|-.....=-+.|-...|+++++++...-... .|+.++.-....=-...-..+|++
T Consensus 570 RdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 570 RDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 999999976 77666 3334444444456688899999999987333333 444444422222234566788999
Q ss_pred HHcccCCCCc--cHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 587 LLRLEGNNKA--RYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 587 ~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+++.-|++.. .....+..-.+.|..+.|+.++..-.+
T Consensus 648 aIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 648 AIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 9988777533 455667777889999999999876544
No 60
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=2.5e-07 Score=95.18 Aligned_cols=497 Identities=14% Similarity=0.126 Sum_probs=292.9
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhh-----HHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhh
Q 005802 90 YNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFT-----VTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVS 164 (676)
Q Consensus 90 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (676)
|..+...|.++|-.. .|++.|.+... +.-.... -.-++ .+...-.++...+.++.|....+..+..+..
T Consensus 609 ra~IAqLCEKAGL~q-raLehytDl~D----IKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~V 682 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQ-RALEHYTDLYD----IKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVV 682 (1666)
T ss_pred HHHHHHHHHhcchHH-HHHHhcccHHH----HHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 556666777777777 77776666543 1111110 01111 2223335667777777777776666666666
Q ss_pred HHHHHhhhccchHHHHHhhhhcCC--------------CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC----------
Q 005802 165 SLIDMYSKCRCYEEACRVFEGCTE--------------EVNLISKNAMVAACCREGEMEMALKTFWRQPE---------- 220 (676)
Q Consensus 165 ~li~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 220 (676)
.+..-|...=..+.-+++|+.... ..|+...-..|.+.|+.|++.+.+++.++-..
T Consensus 683 Qvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfL 762 (1666)
T KOG0985|consen 683 QVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFL 762 (1666)
T ss_pred HHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHH
Confidence 666666666666666666665443 34555556677888888887777776644321
Q ss_pred --------CC-----CeeeH-HH------------HHHHHHhcCChhHHHHHHHHHHh---------------CCCCCcH
Q 005802 221 --------LN-----DAVSW-NT------------LISGYVQNGDAEEGLKLFVRMGE---------------NGVRWNE 259 (676)
Q Consensus 221 --------~~-----~~~~~-~~------------li~~~~~~g~~~~a~~~~~~m~~---------------~g~~p~~ 259 (676)
.| |...| +. .|..|++.=++...-.+.-.+.+ .|.-|
T Consensus 763 keAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~-- 840 (1666)
T KOG0985|consen 763 KEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFP-- 840 (1666)
T ss_pred HhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCC--
Confidence 11 11111 11 23333333222222111111111 11111
Q ss_pred hHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH-H--------HHHhcCC-CCc----
Q 005802 260 HTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAE-S--------MLLLKGV-RNS---- 325 (676)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~--------~~~~~~~-~~~---- 325 (676)
...|..-+.+.+++..-...++..+..|. .|+.++++|...|..+++-.+-. + ...+..+ .|+
T Consensus 841 --~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~ 917 (1666)
T KOG0985|consen 841 --VDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLAC 917 (1666)
T ss_pred --hHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEE
Confidence 22344556778888888888888888874 67888888888887765533221 0 0011110 111
Q ss_pred -------------------hhHHHHHHHHHhcCCHHHHHHHH-----------hccC-----C-CCchhHHHHHHHHHHc
Q 005802 326 -------------------FSISSMIVGYSLQGNMEEARRHF-----------DSLT-----E-KNVVVWTALFSGYVKA 369 (676)
Q Consensus 326 -------------------~~~~~li~~~~~~~~~~~a~~~~-----------~~~~-----~-~~~~~~~~li~~~~~~ 369 (676)
..|-...+-+.+..+.+-=.+++ ++.. + .|+..-+.-+.++...
T Consensus 918 vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMta 997 (1666)
T KOG0985|consen 918 VAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTA 997 (1666)
T ss_pred EeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhc
Confidence 11222333333344433222222 1111 1 3555667778888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcC-----------------------CCCC
Q 005802 370 QNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMG-----------------------VQMD 426 (676)
Q Consensus 370 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~ 426 (676)
+-..+-++++++.+.....-........++-.-+-..+.....+..+++.... +..+
T Consensus 998 dLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n 1077 (1666)
T KOG0985|consen 998 DLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMN 1077 (1666)
T ss_pred CCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhccc
Confidence 88999999999884443332222333333322222223333333333332221 1112
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHC 506 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 506 (676)
......|++ .-+.+++|.+.-++..+ +..|..+..+-.+.|.+.+|++-|-+. -|+..|..++....+.
T Consensus 1078 ~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~ 1146 (1666)
T KOG0985|consen 1078 VSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRT 1146 (1666)
T ss_pred HHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhc
Confidence 222222221 12344444444444443 347999999999999999999877442 3678899999999999
Q ss_pred CcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 005802 507 GSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEK 586 (676)
Q Consensus 507 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 586 (676)
|.+++-.+++...+++ .-.|...+ .|+-+|++.++..+-.+++ ..|+......++.-|...|.++.|.-+|..
T Consensus 1147 ~~~edLv~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~ 1219 (1666)
T KOG0985|consen 1147 GKYEDLVKYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYSN 1219 (1666)
T ss_pred CcHHHHHHHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHHH
Confidence 9999999999988776 66666554 7899999999999887776 368888899999999999999999988874
Q ss_pred HHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 587 LLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 587 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.+-|..|+..+...|.+..|...-+++..
T Consensus 1220 --------vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1220 --------VSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred --------hhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 35688999999999999888876665543
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.9e-08 Score=96.35 Aligned_cols=447 Identities=13% Similarity=0.111 Sum_probs=231.8
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHH--HHHHHH--
Q 005802 128 VTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNA--MVAACC-- 203 (676)
Q Consensus 128 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--l~~~~~-- 203 (676)
..+=++-+...+++++|.+....+...+ +-|...+..-+-++++.+++++|+.+.+.-.. ..+++. +=.+||
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHHHH
Confidence 3344556667778888888888888775 33334566667778888888888866654321 122222 244554
Q ss_pred hcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhCCCChHHHHHHH
Q 005802 204 REGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRW-NEHTFASALSACCGLRNVKCAKEIH 282 (676)
Q Consensus 204 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 282 (676)
+.+..++|+..++-.. .-+..+...-...+-+.|++++|+++|+.+.+.+..- +...-..++.+... .. -
T Consensus 91 rlnk~Dealk~~~~~~-~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~-~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD-RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQ-V 161 (652)
T ss_pred HcccHHHHHHHHhccc-ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hh-H
Confidence 4677777777777433 3333334444455667777888888887776655421 11111111111100 00 0
Q ss_pred HHHHHhCCCCchhHHHHHH---HHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHh-ccCCCC---
Q 005802 283 SWVLKNGLISNPFVSSGIV---DVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFD-SLTEKN--- 355 (676)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~--- 355 (676)
+.+......| ..+|..+. -.+...|++.+|++++.... ++.. .+.+.|
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~------------------------~~~~e~l~~~d~~e 216 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKAL------------------------RICREKLEDEDTNE 216 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHH------------------------HHHHHhhcccccch
Confidence 0111111122 11222222 23344555555554443321 0000 001110
Q ss_pred --c-----hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHH---HHhhcChhH--------------H
Q 005802 356 --V-----VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGA---CALQAALHP--------------G 411 (676)
Q Consensus 356 --~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~---~~~~~~~~~--------------a 411 (676)
+ ..--.|.-.+...|+..+|..+|...+.. .++|........+. .....++-. +
T Consensus 217 Eeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~ 294 (652)
T KOG2376|consen 217 EEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLA 294 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhH
Confidence 0 01122334455566777777766665222 23333222211111 111111110 0
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-cchHHHHHHHHH--HcCChhHHHHHHHHHHHCC
Q 005802 412 KEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD-LVLYNVMIACYA--HHGHEEKAILLFEEMLEKG 488 (676)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~A~~~~~~m~~~g 488 (676)
......+.... ......-+.++.+| .+..+.+.++-...+... ...+..++..+. +......+.+++...-+..
T Consensus 295 ~~~l~~Ls~~q-k~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~ 371 (652)
T KOG2376|consen 295 EFLLSKLSKKQ-KQAIYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH 371 (652)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC
Confidence 11111111100 11111122333333 345566666666665432 334455554433 2335778888888777643
Q ss_pred CCCCHhHHHHHHHHhhccCcHHHHHHHHH--------HchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----
Q 005802 489 IKPDAVTFVAILSAFRHCGSVEMGEKYFN--------SMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP---- 556 (676)
Q Consensus 489 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 556 (676)
..-........++.....|+++.|.+++. .+.+- +.. +.+...++..+.+.++.+-|..++.+..
T Consensus 372 p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~ 448 (652)
T KOG2376|consen 372 PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWR 448 (652)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 22223444555666788999999999998 44322 333 4556677888888887666655555544
Q ss_pred -CCCcHH----HHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 557 -TEEDAV----ILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 557 -~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
..+... .|..+...-.++|+-++|..+++++.+.+|++......++.+|.+. +.+.|..+-+.+
T Consensus 449 ~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 449 KQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 122222 3333444445779999999999999999999999999999998865 456666655443
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=6e-12 Score=83.38 Aligned_cols=50 Identities=40% Similarity=0.694 Sum_probs=46.6
Q ss_pred CCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhC
Q 005802 222 NDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCG 271 (676)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 271 (676)
||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.4e-08 Score=92.46 Aligned_cols=189 Identities=14% Similarity=0.082 Sum_probs=138.1
Q ss_pred hhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--C-CCcchHHHHHHHHHHcCChhHHHHH
Q 005802 404 LQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI--E-RDLVLYNVMIACYAHHGHEEKAILL 480 (676)
Q Consensus 404 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~ 480 (676)
..++++.|..+-++.++.+ +.+...+-.-..++...|+.+.|.-.|+... . -+..+|.-|+.+|...|++.+|.-.
T Consensus 312 ~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred hhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHH
Confidence 4455555665555555543 2333344444566777888888888887654 3 3677899999999999999999887
Q ss_pred HHHHHHCCCCCCHhHHHHHH-HHhh-ccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 005802 481 FEEMLEKGIKPDAVTFVAIL-SAFR-HCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP- 556 (676)
Q Consensus 481 ~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 556 (676)
-+..... +..+..+...+. ..|. ...--++|..+++.-. .+.|+ ....+.+...+...|..++++.++++..
T Consensus 391 An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 391 ANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 7665543 344566665552 3333 3344578888888776 66788 7777888889999999999999999887
Q ss_pred CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 557 TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 557 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
..||....+.|...+...+.+++|...|..++.++|.+..+
T Consensus 467 ~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 467 IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 77888888889999999999999999999999999987543
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=9.1e-09 Score=92.22 Aligned_cols=281 Identities=13% Similarity=0.187 Sum_probs=145.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC-c--hhHHHHHHHHHHhcCChHHH
Q 005802 237 NGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLIS-N--PFVSSGIVDVYCKCENMNYA 313 (676)
Q Consensus 237 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~g~~~~a 313 (676)
++++++|+++|-+|.+.. +-+..+-.+|-+.+.+.|.++.|..+++.+.++.--+ + ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888888888888722 1233445566677778888888888888777652111 1 11223344455555555555
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 005802 314 ESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKN---VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVT 390 (676)
Q Consensus 314 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p 390 (676)
+ .+|..+.+.+ ......|+..|-...+|++|+++-.+. ...+-.+
T Consensus 127 E-------------------------------~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L-~k~~~q~ 174 (389)
T COG2956 127 E-------------------------------DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERL-VKLGGQT 174 (389)
T ss_pred H-------------------------------HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHcCCcc
Confidence 5 5555444421 123344455555555555555555544 2222222
Q ss_pred CH----hHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc----hHH
Q 005802 391 DA----LILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLV----LYN 462 (676)
Q Consensus 391 ~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~ 462 (676)
.. ..|--+........+.+.|..++.+..+.+ +.....--.+.+.+...|+++.|.+.++.+.+.|.. +..
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 11 112222223333444555555555554433 222333334556666667777777666666654432 445
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhc
Q 005802 463 VMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRA 542 (676)
Q Consensus 463 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 542 (676)
.|..+|.+.|+.++....+.++.+....++ .-..+...-....-.+.|..++.+-..+ +|+...+..+++.....
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhcc
Confidence 566677777777777777777666432232 2233333222333344444444433322 57777776776665432
Q ss_pred ---CCHHHHHHHHHhCC
Q 005802 543 ---NQLEKAIEFMKSIP 556 (676)
Q Consensus 543 ---g~~~~A~~~~~~~~ 556 (676)
|...+.+..+++|.
T Consensus 329 aeeg~~k~sL~~lr~mv 345 (389)
T COG2956 329 AEEGRAKESLDLLRDMV 345 (389)
T ss_pred ccccchhhhHHHHHHHH
Confidence 33444555555544
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=1.2e-09 Score=108.67 Aligned_cols=231 Identities=18% Similarity=0.250 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHhhcChhHHHHHHHHHHHc-----CC-CCC-hhHHHHHHHHHHhcCCHHHHHHHHhhcC-------CC--
Q 005802 393 LILVILLGACALQAALHPGKEIHAYILRM-----GV-QMD-KKLISTLVDMYSKCGNMTYAEIIFQNFI-------ER-- 456 (676)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~-- 456 (676)
.+...+...|...|+++.|..+++...+. |. .|. ..+.+.+...|...+++.+|..+|+++. .+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444555666666666666666555443 10 112 2233346677888888888888877663 11
Q ss_pred --CcchHHHHHHHHHHcCChhHHHHHHHHHHH-----CCC-CCCH-hHHHHHHHHhhccCcHHHHHHHHHHchhhcC--C
Q 005802 457 --DLVLYNVMIACYAHHGHEEKAILLFEEMLE-----KGI-KPDA-VTFVAILSAFRHCGSVEMGEKYFNSMTADYK--I 525 (676)
Q Consensus 457 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~-~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~ 525 (676)
-..+++.|...|.+.|++++|...+++..+ .|. .|.. .-++.+...|...+++++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 134677788889999999888888777553 121 1222 2355566678889999999998887655433 2
Q ss_pred CC---C-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-------C--CC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-
Q 005802 526 SP---E-TDHYACMIDLYGRANQLEKAIEFMKSIP-------T--EE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRL- 590 (676)
Q Consensus 526 ~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 590 (676)
.+ + ..+++.|...|.+.|++++|.++++++. . .+ ....++.+...|.+.++++.|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2 5689999999999999999999999887 1 11 2457788888999999999999999988766
Q ss_pred ---cCCC---CccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 591 ---EGNN---KARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 591 ---~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.|++ ...|..|+.+|.+.|++++|.++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4444 44688999999999999999999988764
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=8.2e-10 Score=94.20 Aligned_cols=162 Identities=14% Similarity=0.167 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMID 537 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 537 (676)
+...|.-.|...|+...|.+-+++.++. .|+ ..++..+...|.+.|..+.|.+.|++.. .+.|+ -.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 3455667788888888888888888875 344 5677778888888888888888888887 44666 778888888
Q ss_pred HHhhcCCHHHHHHHHHhCCCCC----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhH
Q 005802 538 LYGRANQLEKAIEFMKSIPTEE----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAE 613 (676)
Q Consensus 538 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 613 (676)
.+|..|++++|...|+++...| ...+|..++.+..+.|+.+.|...+++.++.+|+.+.....++......|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 8888888899988888887444 455788888888888899999999999998888888888888888888999999
Q ss_pred HHHHHHHHHhCCC
Q 005802 614 MGRIRKQMRGMKG 626 (676)
Q Consensus 614 A~~~~~~~~~~~~ 626 (676)
|..+++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9888888876654
No 67
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=4.3e-06 Score=86.48 Aligned_cols=555 Identities=12% Similarity=0.083 Sum_probs=272.1
Q ss_pred ChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC---------------CCcchHHHHHHHHHhc
Q 005802 5 NLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE---------------RNVFSWNTIISACIKS 69 (676)
Q Consensus 5 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------~~~~~~~~ll~~~~~~ 69 (676)
.++++++++..|...+++.+..+.-.+..-|+..=..+...++|+.... .|+.+.-..|.+.++.
T Consensus 658 sve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt 737 (1666)
T KOG0985|consen 658 SVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKT 737 (1666)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhh
Confidence 5788999999999999999998888888888888778888888888753 5677777889999999
Q ss_pred CChHHHHHHhccCC---------------C----C-----CcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCC--
Q 005802 70 HDLKQARSLFDSSP---------------H----K-----DLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRM-- 123 (676)
Q Consensus 70 g~~~~A~~~~~~~~---------------~----~-----~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-- 123 (676)
|.+.+.+++.++-. - | |-..+-.=+-.|.-.++.. .-+++|-+=.. .+-.|
T Consensus 738 ~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~-kyIE~yVQkvN--ps~~p~V 814 (1666)
T KOG0985|consen 738 GQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQ-KYIEIYVQKVN--PSRTPQV 814 (1666)
T ss_pred ccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHH-HHHHHHHhhcC--Ccccchh
Confidence 99998888775432 0 1 1111111111111111222 22222211110 00000
Q ss_pred ---------Chhh-------------HHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHH-HH
Q 005802 124 ---------DEFT-------------VTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEE-AC 180 (676)
Q Consensus 124 ---------~~~~-------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~ 180 (676)
+... ...+..-+-+..+...-...++.....|.+ |..++++|...|..+++-.+ -+
T Consensus 815 vG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fL 893 (1666)
T KOG0985|consen 815 VGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFL 893 (1666)
T ss_pred hhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhc
Confidence 1111 112222233344455555556666666543 45678888887775543222 11
Q ss_pred H------------------------hhhhcCC-------CCchhhHHHHHHHHHhcCChhHHHHHHhh------------
Q 005802 181 R------------------------VFEGCTE-------EVNLISKNAMVAACCREGEMEMALKTFWR------------ 217 (676)
Q Consensus 181 ~------------------------~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------------ 217 (676)
+ .+++-.- ......+....+-+.+..+.+-=.+++.+
T Consensus 894 keN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqV 973 (1666)
T KOG0985|consen 894 KENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQV 973 (1666)
T ss_pred ccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHH
Confidence 1 1110000 00111112222223333333322222211
Q ss_pred ----CCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--cHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005802 218 ----QPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRW--NEHTFASALSACCGLRNVKCAKEIHSWVLKNGLI 291 (676)
Q Consensus 218 ----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 291 (676)
+++..|+..-+.-+.++...+-+.+-++++++..-.+-.- +...-+.|+-... .-+...+.+..+.+-.-+ .
T Consensus 974 v~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD-a 1051 (1666)
T KOG0985|consen 974 VQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD-A 1051 (1666)
T ss_pred HHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC-c
Confidence 1113344445555666666666777777776664321111 1111122222222 223334444444332221 1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 005802 292 SNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQN 371 (676)
Q Consensus 292 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (676)
|+ +.......+-+++|..+|+.... +..+.+.|+ -.-+++|.|.++-++..+| ..|..+..+-.+.|.
T Consensus 1052 ~~------ia~iai~~~LyEEAF~ifkkf~~-n~~A~~VLi---e~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1052 PD------IAEIAIENQLYEEAFAIFKKFDM-NVSAIQVLI---ENIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGL 1119 (1666)
T ss_pred hh------HHHHHhhhhHHHHHHHHHHHhcc-cHHHHHHHH---HHhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCc
Confidence 11 22233334445555555544322 111111121 1234555555555555433 356667777777777
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 005802 372 CEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQ 451 (676)
Q Consensus 372 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 451 (676)
..+|++-|-+. .|+..|.-++..+.+.|.+++-..++..+.+..-.|... +.|+-+|++.+++.+.++++
T Consensus 1120 v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI- 1189 (1666)
T ss_pred hHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-
Confidence 77776666542 355666777777777777777666666666655444433 45666777776666655543
Q ss_pred hcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHH
Q 005802 452 NFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDH 531 (676)
Q Consensus 452 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 531 (676)
..||+.....+.+-|...|.++.|.-+|.. ...|..|...+...|++..|...-++. .+..+
T Consensus 1190 --~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~kt 1251 (1666)
T KOG0985|consen 1190 --AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKT 1251 (1666)
T ss_pred --cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhH
Confidence 244555555555555555555555544432 233444555555555555555444333 13445
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
|..+-.+|...+.+.-|.-. -...--...-+..++..|...|-+++-+.+++..+.+...+...|.-|+..|.+
T Consensus 1252 WK~VcfaCvd~~EFrlAQiC--GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLAQIC--GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHhchhhhhHHHhc--CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 55555555444443322110 000111223344445555555555555555555555544444455555444443
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=6.4e-08 Score=93.58 Aligned_cols=282 Identities=14% Similarity=0.052 Sum_probs=162.0
Q ss_pred CCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCchhHHHH
Q 005802 255 VRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV---RNSFSISSM 331 (676)
Q Consensus 255 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l 331 (676)
..-+......-..-|....++....++.+.+.+.. ++...++..-|.++...|+...-..+-.++.. ....+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 33344445555556666777777777777776654 34555555666677777766655544444443 244566666
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcCh
Q 005802 332 IVGYSLQGNMEEARRHFDSLTEKN---VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAAL 408 (676)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 408 (676)
.--|...|+..+|++.|.+...-| ...|-.+...|.-.|..+.|+..|... . +-++-....+.-+---|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tA-a-rl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTA-A-RLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHH-H-HhccCCcchHHHHHHHHHHhccH
Confidence 666666677777777777665432 346777777777777777777777653 1 11121222222222234445555
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHH--
Q 005802 409 HPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLE-- 486 (676)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-- 486 (676)
+.|..++.++.... |.|+.+ .+-+.......+.+.+|..+|+..+.
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv-------------------------------~~Elgvvay~~~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLV-------------------------------LHELGVVAYTYEEYPEALKYFQKALEVI 444 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchh-------------------------------hhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence 55555554444332 333444 44444333444455555555544431
Q ss_pred --CC-CC-CCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcH
Q 005802 487 --KG-IK-PDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDA 561 (676)
Q Consensus 487 --~g-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 561 (676)
.+ -. --..+++.|..+|.+.+.+++|+..+++... -.+.+..++.++.-.|...|+++.|.+.|.+.. ..|+.
T Consensus 445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 00 01 1234566677777777777777777777653 223346777777777777777777777777766 66666
Q ss_pred HHHHHHHHHHHH
Q 005802 562 VILGSFLNVCRL 573 (676)
Q Consensus 562 ~~~~~l~~~~~~ 573 (676)
.+...++..+..
T Consensus 523 ~~~~~lL~~aie 534 (611)
T KOG1173|consen 523 IFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHHH
Confidence 666666665443
No 69
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=3.7e-11 Score=79.58 Aligned_cols=50 Identities=38% Similarity=0.697 Sum_probs=44.1
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc
Q 005802 456 RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRH 505 (676)
Q Consensus 456 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 505 (676)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888999999999999999999999999999999999999999988864
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=5.9e-10 Score=99.58 Aligned_cols=222 Identities=11% Similarity=0.052 Sum_probs=162.5
Q ss_pred HHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHHcCChhH
Q 005802 400 GACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--R-DLVLYNVMIACYAHHGHEEK 476 (676)
Q Consensus 400 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 476 (676)
.+|.+.|.+..|+..++...+. .|-+.+|..|-..|.+..+++.|+.+|.+... | |+....-+.+.+-..++.++
T Consensus 231 kCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence 3444444444444444443333 34445555666666666666666666665542 2 33333445666777788888
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 477 AILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 477 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
|.++|+...+.. ..+......+...|.-.++++-|+.+++++.+- |+ .++..|..+.-+|.-.++++-++.-|+++.
T Consensus 309 a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 309 ALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 888888887742 334556666677788888899999999888765 54 357778888888888888888888888776
Q ss_pred ---CCC--cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 557 ---TEE--DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 557 ---~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
..| -..+|-.+.......||+..|.+.|+-++..+|++...++.|+-+-.+.|+.++|..++...+...+
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 223 3458888888889999999999999999999999999999999999999999999999998887654
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.21 E-value=1.9e-06 Score=85.01 Aligned_cols=436 Identities=14% Similarity=0.080 Sum_probs=248.2
Q ss_pred CChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHHHHhc
Q 005802 4 LNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERN---VFSWNTIISACIKSHDLKQARSLFD 80 (676)
Q Consensus 4 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~ 80 (676)
+.+...++..+.+.. +++-+..+.....-.+...|+-++|.+....-.+.| .+.|..+--.+-...++++|.++|.
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 445566666677776 556667776666666777788888888877766533 3456555445555567888888887
Q ss_pred cCC--CC-CcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCCh-hhHHHHHHHHHccCCcHHHHHHHHHHHHhcC
Q 005802 81 SSP--HK-DLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDE-FTVTSTLNLCVKLLNVGFGRQLHAFMVKTSN 156 (676)
Q Consensus 81 ~~~--~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 156 (676)
... +| |...|.-+----++.|++. .....-....+ ..|+. ..|.....+..-.|+...|..+++...+...
T Consensus 100 nAl~~~~dN~qilrDlslLQ~QmRd~~-~~~~tr~~LLq----l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 100 NALKIEKDNLQILRDLSLLQIQMRDYE-GYLETRNQLLQ----LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhh-hHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 654 33 3444554443444566666 66666666655 44433 3566666677777888888888888777642
Q ss_pred -CCCCchhhHH------HHHhhhccchHHHHHhhhhcCCC-Cchh-hHHHHHHHHHhcCChhHHHHHHhhCCC-CCCeee
Q 005802 157 -DASGFAVSSL------IDMYSKCRCYEEACRVFEGCTEE-VNLI-SKNAMVAACCREGEMEMALKTFWRQPE-LNDAVS 226 (676)
Q Consensus 157 -~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 226 (676)
.|+...|... .....+.|.+++|++-+.....+ .+.. .--.-...+.+.+++++|..++..+.. .||...
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 3444433322 23445667777777776654431 1222 223345667777888888888876653 455555
Q ss_pred HHHHHH-HHHhcCChhHHH-HHHHHHHhCCCCCcHhHH-HHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005802 227 WNTLIS-GYVQNGDAEEGL-KLFVRMGENGVRWNEHTF-ASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDV 303 (676)
Q Consensus 227 ~~~li~-~~~~~g~~~~a~-~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (676)
|+..+. ++.+--+.-+++ .+|....+. . |....- ..=+.......-.+....++....+.|+++ ++..+...
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SL 329 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEK-Y-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSL 329 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhc-C-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHH
Confidence 544433 333222222333 445444331 1 111110 001111111223344555666666666544 23333333
Q ss_pred HHhcCChHHHHHHH---Hh-c--------------CCCCch--hHHHHHHHHHhcCCHHHHHHHHhccCCCCchh---HH
Q 005802 304 YCKCENMNYAESML---LL-K--------------GVRNSF--SISSMIVGYSLQGNMEEARRHFDSLTEKNVVV---WT 360 (676)
Q Consensus 304 ~~~~g~~~~a~~~~---~~-~--------------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~ 360 (676)
|-.-...+-.+++. .. + ..|... ++--++..+-..|+++.|..+++...+..+.. |.
T Consensus 330 yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~ 409 (700)
T KOG1156|consen 330 YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYL 409 (700)
T ss_pred HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHH
Confidence 32221111111111 11 1 012222 34456777888999999999999888755443 34
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChh--------HHHH
Q 005802 361 ALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKK--------LIST 432 (676)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~ 432 (676)
.-...+...|+.+.|..++.+. ..--.||...-.--..-..+.+..++|..+.....+.|. +.. +|-.
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea--~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~ 485 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEA--QELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQ 485 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHH--HhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHh
Confidence 4457788889999999999885 333345554444555556678888999988888887764 211 1111
Q ss_pred --HHHHHHhcCCHHHHHHHHhhcC
Q 005802 433 --LVDMYSKCGNMTYAEIIFQNFI 454 (676)
Q Consensus 433 --l~~~~~~~g~~~~A~~~~~~~~ 454 (676)
=..+|.+.|++..|++-|..+.
T Consensus 486 ~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 486 LEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhHH
Confidence 1356777777777777666554
No 72
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.20 E-value=1.1e-06 Score=87.68 Aligned_cols=515 Identities=12% Similarity=0.064 Sum_probs=285.1
Q ss_pred CCCchHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHhccCCCCCcc-cHHHHHHHHHhcCCChhHHHHHHHHhHh
Q 005802 38 HNLLRESRKLFDEMPERNVFSWNTIISACIKSHDLKQARSLFDSSPHKDLV-TYNSMLCGYINAEGYEADALKLFIEMQS 116 (676)
Q Consensus 38 ~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 116 (676)
..++.+|..+|-.-. .-...|..|....++++|..+-+....|... .-++.++++...|+.+ .|-++- .
T Consensus 544 ~kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~-ka~elk----~ 613 (1636)
T KOG3616|consen 544 EKKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDE-KAAELK----E 613 (1636)
T ss_pred HhhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchh-hhhhhc----c
Confidence 346777777763311 1234566777777888887776655544322 2234445555555555 443321 1
Q ss_pred ccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCc-------------hhhHHHHHhhhccchHHHHHhh
Q 005802 117 ADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGF-------------AVSSLIDMYSKCRCYEEACRVF 183 (676)
Q Consensus 117 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~li~~~~~~g~~~~A~~~~ 183 (676)
+...-.+.|..|.+.|.+.+|......-.. +..|.. .|...-+.|-+..++++|++.|
T Consensus 614 -------sdgd~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~f 684 (1636)
T KOG3616|consen 614 -------SDGDGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECF 684 (1636)
T ss_pred -------ccCccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHH
Confidence 111112344555555555544432211000 011111 2222233333344445555544
Q ss_pred hhcCC------------CCchhh-HHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 184 EGCTE------------EVNLIS-KNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRM 250 (676)
Q Consensus 184 ~~~~~------------~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 250 (676)
.+-.. +..++. -...-..+...|+++.|..-|-+.. ..--.|.+......|..|+.+++.+
T Consensus 685 kkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~------~~~kaieaai~akew~kai~ildni 758 (1636)
T KOG3616|consen 685 KKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN------CLIKAIEAAIGAKEWKKAISILDNI 758 (1636)
T ss_pred HcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh------hHHHHHHHHhhhhhhhhhHhHHHHh
Confidence 32111 001110 0112233445566666666654432 1223355667788899999999988
Q ss_pred HhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCC--chhH
Q 005802 251 GENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRN--SFSI 328 (676)
Q Consensus 251 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~ 328 (676)
..... ....|..+...|+..|+++.|+++|.+. ..++.-|.+|.+.|+++.|.++-.....|. ...|
T Consensus 759 qdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~y 827 (1636)
T KOG3616|consen 759 QDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLY 827 (1636)
T ss_pred hhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHH
Confidence 77543 3456778889999999999999998642 235677899999999999999887766654 3456
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcCh
Q 005802 329 SSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAAL 408 (676)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 408 (676)
-+-..-+-+.|++.+|.+++-.+..|+. .|..|-+.|..+..+++..+- .| ..-..|...+..-+...|++
T Consensus 828 iakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~---h~-d~l~dt~~~f~~e~e~~g~l 898 (1636)
T KOG3616|consen 828 IAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH---HG-DHLHDTHKHFAKELEAEGDL 898 (1636)
T ss_pred HHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh---Ch-hhhhHHHHHHHHHHHhccCh
Confidence 6666678899999999999999988874 467888999999999988764 11 11234555666777788999
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc-----chHHH------HHHHH---------
Q 005802 409 HPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDL-----VLYNV------MIACY--------- 468 (676)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~------l~~~~--------- 468 (676)
..|+.-|-+.. -|.+-+++|..++-+++|.++-..--..|. ..|.. -+..+
T Consensus 899 kaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~ 969 (1636)
T KOG3616|consen 899 KAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAA 969 (1636)
T ss_pred hHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHH
Confidence 98887765443 255677888888888888887654332211 11211 11122
Q ss_pred ----HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHH----------
Q 005802 469 ----AHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYAC---------- 534 (676)
Q Consensus 469 ----~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~---------- 534 (676)
+..+-++-|..+-+-..+. -.|.. ...+..-+...|++++|-+.+-+..+- ..-..+|..
T Consensus 970 id~a~d~~afd~afdlari~~k~-k~~~v--hlk~a~~ledegk~edaskhyveaikl---ntynitwcqavpsrfd~e~ 1043 (1636)
T KOG3616|consen 970 IDFAADNCAFDFAFDLARIAAKD-KMGEV--HLKLAMFLEDEGKFEDASKHYVEAIKL---NTYNITWCQAVPSRFDAEF 1043 (1636)
T ss_pred hhhhhcccchhhHHHHHHHhhhc-cCccc--hhHHhhhhhhccchhhhhHhhHHHhhc---ccccchhhhcccchhhHHH
Confidence 3333344444333322221 11221 222333456778888886666554322 100111111
Q ss_pred ---------HHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH
Q 005802 535 ---------MIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY 605 (676)
Q Consensus 535 ---------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 605 (676)
-+.++.+.++|..|..+-+.--...-+.++..-.+.....|++.+|+.++-++. .|+ ...+-|
T Consensus 1044 ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllran--kp~------i~l~yf 1115 (1636)
T KOG3616|consen 1044 IRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN--KPD------IALNYF 1115 (1636)
T ss_pred HHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecC--CCc------hHHHHH
Confidence 123344444444444444332211122334444445566778877777754443 232 223456
Q ss_pred HhcCChhHHHHHHHH
Q 005802 606 AAEGNWAEMGRIRKQ 620 (676)
Q Consensus 606 ~~~g~~~~A~~~~~~ 620 (676)
...+.|.+|+++-+.
T Consensus 1116 ~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1116 IEAELWPDALRIAKD 1130 (1636)
T ss_pred HHhccChHHHHHHHh
Confidence 667777777766543
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.19 E-value=4.4e-07 Score=91.29 Aligned_cols=419 Identities=13% Similarity=0.067 Sum_probs=234.1
Q ss_pred CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHH-HH
Q 005802 189 EVNLISKNAMVAACCREGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFA-SA 265 (676)
Q Consensus 189 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~l 265 (676)
..+...|..+.-++.+.|+++.+.+.|++... ......|+.+-..+...|.-..|+.+++.-....-.|+..+-. ..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 45777788888888889999998888887652 2234457888888888888888888888766544335443333 33
Q ss_pred HHHHh-CCCChHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhcC----C-------hHHHHHHHHhcCC---CCch
Q 005802 266 LSACC-GLRNVKCAKEIHSWVLKN--GL--ISNPFVSSGIVDVYCKCE----N-------MNYAESMLLLKGV---RNSF 326 (676)
Q Consensus 266 l~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~g----~-------~~~a~~~~~~~~~---~~~~ 326 (676)
-..|. +.+.++++..+-.++... +. ...+..+..+.-+|...- . -.++.+.+++..+ .|+.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 33333 556677777666666552 11 122333444433443211 0 1122222333221 2333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccCC----CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHH
Q 005802 327 SISSMIVGYSLQGNMEEARRHFDSLTE----KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGAC 402 (676)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 402 (676)
+.-.+.--|+..++++.|.+...+..+ .+...|..|.-.+...+++.+|+.+.+..+...|....- ...-+..-
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l--~~~~~~i~ 557 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL--MDGKIHIE 557 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh--chhhhhhh
Confidence 333333344555555555555544332 244455555555555555666655555543332221111 01111111
Q ss_pred HhhcChhHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC----CC-C-cchHHHHHHHHHHcCChh
Q 005802 403 ALQAALHPGKEIHAYILRMG-VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI----ER-D-LVLYNVMIACYAHHGHEE 475 (676)
Q Consensus 403 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-~-~~~~~~l~~~~~~~~~~~ 475 (676)
...++.+++......+...= -.+. ....++-....+....+. ++ + ..++..+.......+ .
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~ 625 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--K 625 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhh----------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--h
Confidence 12333333333332222100 0000 000111111222222221 11 1 223322222221111 1
Q ss_pred HHHHHHHHHHHCCCCC--C------HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHH
Q 005802 476 KAILLFEEMLEKGIKP--D------AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLE 546 (676)
Q Consensus 476 ~A~~~~~~m~~~g~~p--~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 546 (676)
.+..-.. |...-+.| + ...|......+...+..++|...+.+.. ++.|- ...|......+...|+.+
T Consensus 626 ~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 626 SAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhH
Confidence 1110000 11111222 2 1234455566788889999988887775 44454 777877888899999999
Q ss_pred HHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHH--HHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 547 KAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGE--AEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 547 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
+|.+.|.... .+.++....++...+.+.|+-..|.. ++..+.+.+|.++.+|..|+.++.+.|+.++|.+.|....
T Consensus 702 EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 702 EAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 9999998887 44466788899999999998888888 9999999999999999999999999999999999999887
Q ss_pred hCC
Q 005802 623 GMK 625 (676)
Q Consensus 623 ~~~ 625 (676)
+..
T Consensus 782 qLe 784 (799)
T KOG4162|consen 782 QLE 784 (799)
T ss_pred hhc
Confidence 653
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=1e-08 Score=107.51 Aligned_cols=244 Identities=13% Similarity=0.056 Sum_probs=170.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCC-HhHHHHHHHHHH---------hhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 005802 371 NCEALFDLLSEFVTKEGVVTD-ALILVILLGACA---------LQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKC 440 (676)
Q Consensus 371 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (676)
..++|+..|++.+. ..|+ ...+..+..++. ..++.++|...++.+.+.. +.+...+..+...+...
T Consensus 276 ~~~~A~~~~~~Al~---ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVN---MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 34677777776532 2333 233333333322 2234678888888888765 55677788888888999
Q ss_pred CCHHHHHHHHhhcC--CC-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCcHHHHHHHH
Q 005802 441 GNMTYAEIIFQNFI--ER-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV-TFVAILSAFRHCGSVEMGEKYF 516 (676)
Q Consensus 441 g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~ 516 (676)
|++++|...|++.. .| +...+..+...+...|++++|...+++..+. .|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999876 33 4557888889999999999999999999984 45532 3333444566689999999999
Q ss_pred HHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHH-HHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 517 NSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAV-ILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 517 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
+++... ..|+ +..+..+..++...|+.++|...++++. ..|+.. .+..+...+...| +.|...++++.+..-.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 988653 2354 5567788889999999999999999876 444433 4445555566666 4888888887766333
Q ss_pred CCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 594 NKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
.+.....+..+|.-.|+.+.+... +++.+.+
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 333334477778888888888777 7777654
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.17 E-value=1.1e-08 Score=95.56 Aligned_cols=162 Identities=19% Similarity=0.201 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSA 502 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~ 502 (676)
...+..+...+...|++++|.+.+++.. ..+...+..+...+...|++++|.+.+++..+....| ....+..+..+
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 3344445555555555555555555443 1233455556666667777777777777766532222 23345556666
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhH
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAEL 579 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 579 (676)
+...|++++|...+++.... .|+ ...+..+...+...|++++|...+++.. .++++..+..+...+...|+.+.
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA 221 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 77777777777777777643 333 5566677777777788888777777665 23455566666667777778888
Q ss_pred HHHHHHHHHccc
Q 005802 580 AGEAEEKLLRLE 591 (676)
Q Consensus 580 a~~~~~~~~~~~ 591 (676)
|..+.+.+....
T Consensus 222 a~~~~~~~~~~~ 233 (234)
T TIGR02521 222 AQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHhhC
Confidence 877777666543
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.4e-06 Score=81.03 Aligned_cols=264 Identities=9% Similarity=-0.006 Sum_probs=184.0
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHH-HHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHH
Q 005802 355 NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALIL-VILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTL 433 (676)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 433 (676)
|+.....+...+...|+.++|+..|++. . -+.|+..+- ....-.+.+.|+.+....+...+.... ..+...+-.-
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~-~--~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSST-L--CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHH-h--hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 5556666777777777777777777764 2 223332221 111112335566666555554444322 1222233333
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcH
Q 005802 434 VDMYSKCGNMTYAEIIFQNFIER---DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSV 509 (676)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~ 509 (676)
........+++.|+.+-++.+.. ++..|-.-...+...|+.++|.-.|+.... +.| +..+|..|+.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 44455667899999988887754 444555555778899999999999998876 555 578999999999999999
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHH-HHHh-hcCCHHHHHHHHHhCC-CCCc-HHHHHHHHHHHHHhCCHhHHHHHHH
Q 005802 510 EMGEKYFNSMTADYKISPETDHYACMI-DLYG-RANQLEKAIEFMKSIP-TEED-AVILGSFLNVCRLNRNAELAGEAEE 585 (676)
Q Consensus 510 ~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 585 (676)
.+|..+-+.... -+..+..+...+. ..+. .----++|.+++++.. ..|+ ......+...|...|.++.++.+++
T Consensus 385 kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 999888776654 2334466655552 3333 2334588999999887 5564 4466777788999999999999999
Q ss_pred HHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 586 KLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 586 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
+.+...|+ ...+..|++++...+.+.+|.+.|....+.+++
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 99998886 578999999999999999999999998876654
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.15 E-value=4.7e-07 Score=89.21 Aligned_cols=358 Identities=15% Similarity=0.105 Sum_probs=156.6
Q ss_pred cCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH-hHHHHHHHHHhCCCChHHHHHH
Q 005802 205 EGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNE-HTFASALSACCGLRNVKCAKEI 281 (676)
Q Consensus 205 ~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~ 281 (676)
..++++|++.+..... +.|...|.-+--.-++.|+++...+.-....+ ..|+. ..|..+..+..-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq--l~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ--LRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555543321 22334444443344455555555555555544 22333 2334444444555666666666
Q ss_pred HHHHHHhCC-CCchhHHHHHH------HHHHhcCChHHHHHHHHhcCCC--Cchh-HHHHHHHHHhcCCHHHHHHHHhcc
Q 005802 282 HSWVLKNGL-ISNPFVSSGIV------DVYCKCENMNYAESMLLLKGVR--NSFS-ISSMIVGYSLQGNMEEARRHFDSL 351 (676)
Q Consensus 282 ~~~~~~~~~-~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~a~~~~~~~ 351 (676)
++...+... .|+...+.... ....+.|..+.|.+.+...... |... -..-...+.+.+++++|..++..+
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 666555432 34444333221 2234455566665555443321 2222 223344566677777777777777
Q ss_pred CCC--CchhHHHH-HHHHHHcCChHHHH-HHHHHHHHcCCCCCCHhHHHHH-HHHHHhhcChhHHHHHHHHHHHcCCCCC
Q 005802 352 TEK--NVVVWTAL-FSGYVKAQNCEALF-DLLSEFVTKEGVVTDALILVIL-LGACALQAALHPGKEIHAYILRMGVQMD 426 (676)
Q Consensus 352 ~~~--~~~~~~~l-i~~~~~~~~~~~a~-~~~~~m~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 426 (676)
..+ |-..|... ..++.+-.+..++. .+|... ... .|....-..+ +.......-.+....++....+.|+++-
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l-s~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAIL-SEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH-hhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch
Confidence 653 33333333 33333333333333 444442 111 1111111110 1111112222333445555666665543
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHhh
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA--VTFVAILSAFR 504 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~ 504 (676)
... +...|-.-...+ +++ .++..|...-....+....+.-. --+|.. .|+..+...+-
T Consensus 323 f~d---l~SLyk~p~k~~----~le-----------~Lvt~y~~~L~~~~~f~~~D~~~--~E~PttllWt~y~laqh~D 382 (700)
T KOG1156|consen 323 FKD---LRSLYKDPEKVA----FLE-----------KLVTSYQHSLSGTGMFNFLDDGK--QEPPTTLLWTLYFLAQHYD 382 (700)
T ss_pred hhh---hHHHHhchhHhH----HHH-----------HHHHHHHhhcccccCCCcccccc--cCCchHHHHHHHHHHHHHH
Confidence 322 222221111100 111 11111111000000000000000 013332 23444555566
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHH
Q 005802 505 HCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAG 581 (676)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 581 (676)
..|+++.|..+++... +..|+ +..|-.-.+.+..+|++++|..++++.. ..+|...-.-...-..+.++.++|.
T Consensus 383 ~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 383 KLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred HcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHH
Confidence 6666666666666665 44566 5555555666666666666666666665 3344433334444455666666666
Q ss_pred HHHHHHHcc
Q 005802 582 EAEEKLLRL 590 (676)
Q Consensus 582 ~~~~~~~~~ 590 (676)
.++.+..+-
T Consensus 460 ~~~skFTr~ 468 (700)
T KOG1156|consen 460 EVLSKFTRE 468 (700)
T ss_pred HHHHHhhhc
Confidence 666655543
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=4.4e-09 Score=110.23 Aligned_cols=211 Identities=13% Similarity=0.046 Sum_probs=164.1
Q ss_pred cChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh---------cCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHHcCC
Q 005802 406 AALHPGKEIHAYILRMGVQMDKKLISTLVDMYSK---------CGNMTYAEIIFQNFIE--R-DLVLYNVMIACYAHHGH 473 (676)
Q Consensus 406 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 473 (676)
++.++|..++++..+.. |.+...+..+..+|.. .+++++|...+++..+ | +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34578888888888764 3345556555555442 3458899999998763 3 56678888888999999
Q ss_pred hhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHH
Q 005802 474 EEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEF 551 (676)
Q Consensus 474 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 551 (676)
+++|...|++..+. .|+ ...+..+..++...|++++|...+++..+ +.|+ ...+..++..+...|++++|+..
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999985 455 56777888899999999999999999974 4565 33334455567778999999999
Q ss_pred HHhCC--CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 552 MKSIP--TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 552 ~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
+++.. .+| ++..+..+..++...|++++|...++++....|.+......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98876 234 45557777888889999999999999998888888888888888888888 4888888887664
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=5.3e-09 Score=100.04 Aligned_cols=190 Identities=18% Similarity=0.128 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhc
Q 005802 430 ISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRH 505 (676)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 505 (676)
+..+...|.+.|+.+.|...|++..+ .+...|+.+...+...|++++|...|++..+ +.|+ ...+..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 34444445555555555555554431 2344555555555666666666666666555 2343 3444445555555
Q ss_pred cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHH
Q 005802 506 CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEE 585 (676)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 585 (676)
.|++++|.+.++...+. .|+..........+...++.++|...+++.....++..|. ........|+...+ ..++
T Consensus 145 ~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~~~ 219 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TLME 219 (296)
T ss_pred CCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HHHH
Confidence 56666666666655432 3332111111122233455666666654433111111121 11122223333222 1222
Q ss_pred HHH-------cccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 586 KLL-------RLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 586 ~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.+. +..|..+..|..|+.++.+.|++++|...+++..+.++
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 222 22334445566666666666666666666666655443
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=2.7e-07 Score=83.85 Aligned_cols=147 Identities=12% Similarity=0.029 Sum_probs=65.8
Q ss_pred CChhHHHHHHhhCCC-CCCeeeHHHHH-HHHHhcCChhHHHHHHHHHHhCCCCCcH-hHHHHHHHHHhCCCChHHHHHHH
Q 005802 206 GEMEMALKTFWRQPE-LNDAVSWNTLI-SGYVQNGDAEEGLKLFVRMGENGVRWNE-HTFASALSACCGLRNVKCAKEIH 282 (676)
Q Consensus 206 g~~~~A~~~~~~~~~-~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~ 282 (676)
-.+.+|++++.+... .|.-...|.-+ -+|.+..-++-+.++++-..+. + ||+ ...+.......+.=+-..|+.-.
T Consensus 165 ~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~-pdStiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-F-PDSTIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-C-CCcHHHHHHHHHHHhhhhccchhHHHH
Confidence 345566666655432 33333444333 3455666666666766666552 2 332 22222222222222222233333
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHh-----cCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCch
Q 005802 283 SWVLKNGLISNPFVSSGIVDVYCK-----CENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVV 357 (676)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (676)
..+...+-..- ..+.-+++ ...-+.|.+++-.+...-+..-..|+--|.+.+++.+|..+.+.+...++.
T Consensus 243 k~ladN~~~~~-----~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~ 317 (557)
T KOG3785|consen 243 KELADNIDQEY-----PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPY 317 (557)
T ss_pred HHHHhcccccc-----hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChH
Confidence 33332221110 01111111 122234444443333322333344556678888888888998888654444
Q ss_pred hH
Q 005802 358 VW 359 (676)
Q Consensus 358 ~~ 359 (676)
-|
T Consensus 318 Ey 319 (557)
T KOG3785|consen 318 EY 319 (557)
T ss_pred HH
Confidence 33
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.8e-09 Score=96.64 Aligned_cols=234 Identities=8% Similarity=0.009 Sum_probs=178.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 005802 360 TALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSK 439 (676)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (676)
+.+..+|.+.|.+.+|.+.|+.-+ ...|-+.||..|-.+|.+..++..|..++..-.+. ++.+.....-....+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL---~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSL---TQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHh---hcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 456666777777777777776542 22455566777777777777777777777666654 34555555566777778
Q ss_pred cCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHH
Q 005802 440 CGNMTYAEIIFQNFIER---DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYF 516 (676)
Q Consensus 440 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 516 (676)
.++.++|.++++...+. ++.....+...|.-.++.+-|+..|+++.+.|+. +...|+.+.-+|...++++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88888888888877643 5556666777788889999999999999999864 6677888888899999999999988
Q ss_pred HHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccC
Q 005802 517 NSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEG 592 (676)
Q Consensus 517 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 592 (676)
++.... .-.|+ .++|-.+.......|++.-|.+.|+-.. .+.+...++.|.-.-.+.|+.++|..++..+....|
T Consensus 382 ~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 888665 44465 6788888888889999999999998887 444667888888888999999999999999999988
Q ss_pred CCCccHH
Q 005802 593 NNKARYV 599 (676)
Q Consensus 593 ~~~~~~~ 599 (676)
+-.....
T Consensus 461 ~m~E~~~ 467 (478)
T KOG1129|consen 461 DMAEVTT 467 (478)
T ss_pred ccccccc
Confidence 7554433
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.6e-06 Score=84.72 Aligned_cols=460 Identities=14% Similarity=0.101 Sum_probs=224.1
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHH--HhcCChHHHHHHh
Q 005802 2 RSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISAC--IKSHDLKQARSLF 79 (676)
Q Consensus 2 r~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~A~~~~ 79 (676)
.++++++|.+.-+++++.+ +-+..++.+-+-++.+.+.+++|..+.+.-........-.+=.+| .+.++.++|...+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 4688999999999999877 777888888888999999999999776655432221111123444 4788999999988
Q ss_pred ccCCCCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCC-ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCC
Q 005802 80 DSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRM-DEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDA 158 (676)
Q Consensus 80 ~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 158 (676)
+...+-+..+-..-...+.+.+++. +|+++|+.+.+ .+..- +...-..++.+-. +..+ +.+......|
T Consensus 103 ~~~~~~~~~ll~L~AQvlYrl~~yd-ealdiY~~L~k--n~~dd~d~~~r~nl~a~~a-------~l~~-~~~q~v~~v~ 171 (652)
T KOG2376|consen 103 KGLDRLDDKLLELRAQVLYRLERYD-EALDIYQHLAK--NNSDDQDEERRANLLAVAA-------ALQV-QLLQSVPEVP 171 (652)
T ss_pred hcccccchHHHHHHHHHHHHHhhHH-HHHHHHHHHHh--cCCchHHHHHHHHHHHHHH-------hhhH-HHHHhccCCC
Confidence 8555555556666667778888998 99999999875 22211 1111112221111 1111 1222222223
Q ss_pred CCchhhH---HHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChh--HHHHHHhhCCCCCCeeeHHHHHHH
Q 005802 159 SGFAVSS---LIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEME--MALKTFWRQPELNDAVSWNTLISG 233 (676)
Q Consensus 159 ~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~li~~ 233 (676)
+ .+|.. ....++..|++.+|+++++....- -...+. .++.. +-..-+ + ..--.|.-+
T Consensus 172 e-~syel~yN~Ac~~i~~gky~qA~elL~kA~~~--------~~e~l~-~~d~~eEeie~el-------~-~IrvQlayV 233 (652)
T KOG2376|consen 172 E-DSYELLYNTACILIENGKYNQAIELLEKALRI--------CREKLE-DEDTNEEEIEEEL-------N-PIRVQLAYV 233 (652)
T ss_pred c-chHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--------HHHhhc-ccccchhhHHHHH-------H-HHHHHHHHH
Confidence 2 22332 334455667777777776643110 000000 00000 000000 0 011223445
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHH---HHhCCCChHH--HHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 005802 234 YVQNGDAEEGLKLFVRMGENGVRWNEHTFASALS---ACCGLRNVKC--AKEIHSWVLKNGLISNPFVSSGIVDVYCKCE 308 (676)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 308 (676)
+...|+.++|..+|........ +|........+ +.....++.. ++..++..... ..
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~---l~--------------- 294 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK---LA--------------- 294 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH---hH---------------
Confidence 6667888888888888877543 44433222222 2211111111 11111111000 00
Q ss_pred ChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCC-chhHHHHHHHHHH--cCChHHHHHHHHHHHHc
Q 005802 309 NMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKN-VVVWTALFSGYVK--AQNCEALFDLLSEFVTK 385 (676)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~ 385 (676)
+.....+..-... ..+........-.+..+.+.++...++... ...+.+++..+.+ ...+..+..++... ..
T Consensus 295 --~~~l~~Ls~~qk~--~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~-~~ 369 (652)
T KOG2376|consen 295 --EFLLSKLSKKQKQ--AIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQF-AD 369 (652)
T ss_pred --HHHHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hc
Confidence 0000000000000 000001111112234444555555554432 1223333333222 22355566666553 22
Q ss_pred CCCCCCHhHHHHHHHHHHhhcChhHHHHHHH--------HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 005802 386 EGVVTDALILVILLGACALQAALHPGKEIHA--------YILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE-- 455 (676)
Q Consensus 386 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 455 (676)
....-........+......|+++.|..++. .+.+.+. .+.+...+...|.+.++-+.|..++.....
T Consensus 370 ~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 370 GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 1111123334444455556666666666666 3333333 334445566666666665555555554331
Q ss_pred ----CCc----chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHc
Q 005802 456 ----RDL----VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSM 519 (676)
Q Consensus 456 ----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 519 (676)
+.. .++.-+...-.++|+.++|..+++++.+.. ++|..+...++.+|++. +++.|..+-+.+
T Consensus 448 ~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 448 RKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 111 123333334455677777777777777642 45666677777777664 566666655544
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.09 E-value=1.1e-06 Score=90.83 Aligned_cols=344 Identities=13% Similarity=-0.004 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhccCC
Q 005802 277 CAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV---RNSFSISSMIVGYSLQGNMEEARRHFDSLTE 353 (676)
Q Consensus 277 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (676)
.|..-+...++.. ..+..+|+.|.-. ...|.+.-+...|-+-.. ....+|..+...+.+..+++.|...|.....
T Consensus 801 ~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 4555555554432 2344555655444 445667767666644332 3556777777788888899999999888876
Q ss_pred C---CchhHHHHHHHHHHcCChHHHHHHHHHH---HHcCCCCCCHhHHHHHHHHHHhhcChhHHHHH----------HHH
Q 005802 354 K---NVVVWTALFSGYVKAQNCEALFDLLSEF---VTKEGVVTDALILVILLGACALQAALHPGKEI----------HAY 417 (676)
Q Consensus 354 ~---~~~~~~~li~~~~~~~~~~~a~~~~~~m---~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~----------~~~ 417 (676)
- |...|--.....-..|+.-++..+|..- -...|-.|+...+..........|+.+.-... ++.
T Consensus 879 LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 879 LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 3 3344443333444557777777777651 12233344444444333334444444332221 222
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCCcchHHHH----HHHHHHcCChhHHHHHHHHHHHCC
Q 005802 418 ILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI-----ERDLVLYNVM----IACYAHHGHEEKAILLFEEMLEKG 488 (676)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~m~~~g 488 (676)
... +.+.....|.+.....-+.+.+..|.+...+.+ +-+...|+.. .+.++..|.++.|..-+...-.
T Consensus 959 yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~-- 1035 (1238)
T KOG1127|consen 959 YFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM-- 1035 (1238)
T ss_pred HHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch--
Confidence 221 445566677777777777777777777766653 2355555542 3344455666655433221110
Q ss_pred CCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHH
Q 005802 489 IKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILG 565 (676)
Q Consensus 489 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 565 (676)
..+......-+.. .-.|+++++.+.|++...-..-..+ +.....++......+..+.|...+-+.. .+|+....-
T Consensus 1036 -evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll 1113 (1238)
T KOG1127|consen 1036 -EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLL 1113 (1238)
T ss_pred -hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHH
Confidence 1111111111111 3357888888888887643232333 3445555666667777777777665554 556666655
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcc---cCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRL---EGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
.+...+.-..+......+.++.... .--.-......-.+|...|+-.-..+.+++..--.+.
T Consensus 1114 ~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P~ 1178 (1238)
T KOG1127|consen 1114 PLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVHSNPG 1178 (1238)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCCC
Confidence 5555554444444444444444333 1111222334445667777777777777766554443
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.09 E-value=1.9e-06 Score=86.78 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDL 538 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 538 (676)
.|......+.+.+..++|...+.+.... .......|......+...|..++|.+.|.... -+.|+ +.+..++..+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHH
Confidence 4556667788889999998888777663 23346667777677888999999999998876 67888 8889999999
Q ss_pred HhhcCCHHHHHH--HHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc
Q 005802 539 YGRANQLEKAIE--FMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA 596 (676)
Q Consensus 539 ~~~~g~~~~A~~--~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 596 (676)
+.+.|+..-|.+ ++.++. .+.++..|-.++..+...|+.++|.+.|..+.++.+.+|.
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999998777777 888877 5668999999999999999999999999999999776654
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=8.3e-08 Score=91.87 Aligned_cols=227 Identities=11% Similarity=0.000 Sum_probs=153.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCCH--hHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 005802 370 QNCEALFDLLSEFVTKEGVVTDA--LILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAE 447 (676)
Q Consensus 370 ~~~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 447 (676)
+..+.++.-+.+++......|+. ..+..+...+...|+.+.|...+....+.. +.+...++.+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 35566666666664433333332 345555566777888888888888777765 456788889999999999999999
Q ss_pred HHHhhcCC--C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcC
Q 005802 448 IIFQNFIE--R-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYK 524 (676)
Q Consensus 448 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 524 (676)
..|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...+++++|...+++... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99998753 3 4567888888899999999999999999884 46544222222234567889999999976543 3
Q ss_pred CCCCHHHHHHHHHHHhhcCCH--HHHHHHHHhCC-C-----CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC-C
Q 005802 525 ISPETDHYACMIDLYGRANQL--EKAIEFMKSIP-T-----EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN-K 595 (676)
Q Consensus 525 ~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~-~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~ 595 (676)
..|+...+ .+...+ .|+. +++.+.+.+.. . +.....|..++..+...|++++|+..|+++++.+|.+ .
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33433222 233333 4444 33343333322 1 1234578899999999999999999999999998754 3
Q ss_pred ccHHHHHHH
Q 005802 596 ARYVQLANV 604 (676)
Q Consensus 596 ~~~~~l~~~ 604 (676)
..-..++..
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 333334443
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.03 E-value=2.1e-07 Score=92.84 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=53.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhc-----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-----C----CC
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADY-----KISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-----T----EE 559 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~----~~ 559 (676)
+++.|...|...|++++|.++++...... +..+. -..++.|...|.+.+++.+|.++|.+.. . +.
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 45555555666666666666555543321 11111 3345556666666666666666655543 1 12
Q ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 005802 560 DAVILGSFLNVCRLNRNAELAGEAEEKLL 588 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 588 (676)
...++..|..+|...|+++.|+++.+++.
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23466777777777788877777777766
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.03 E-value=3.9e-06 Score=85.12 Aligned_cols=430 Identities=15% Similarity=0.102 Sum_probs=202.9
Q ss_pred HHHhhhccchHHHHHhhhhcCC-CCc-hhhHHHHHHHHHhcCChhHHHHHHhhCCC-CCCeeeHH-HHHHHHHhc-----
Q 005802 167 IDMYSKCRCYEEACRVFEGCTE-EVN-LISKNAMVAACCREGEMEMALKTFWRQPE-LNDAVSWN-TLISGYVQN----- 237 (676)
Q Consensus 167 i~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~-~li~~~~~~----- 237 (676)
...+...|++++|++.+++... -.| ..........+.+.|+.++|...+..+.. .|+...|- .+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 3455666777777777765443 122 33344555666666676666666665543 34333333 333333111
Q ss_pred CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 005802 238 GDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNV-KCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESM 316 (676)
Q Consensus 238 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 316 (676)
...+....+|+++...- |.......+.-.+..-..+ ..+...+..+...|+++ +++.|-..|....+.....++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 23455566666665532 4333332222222211112 23444444555555422 344444444433333333322
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccC-CCCch--hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHh
Q 005802 317 LLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLT-EKNVV--VWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDAL 393 (676)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 393 (676)
+...... +...+.+.... ..-. .|... ++.-+.+.|...|++++|++++++.+... +..+.
T Consensus 166 ~~~~~~~-----------l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~e 229 (517)
T PF12569_consen 166 VEEYVNS-----------LESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVE 229 (517)
T ss_pred HHHHHHh-----------hcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHH
Confidence 2211100 00000000000 0000 01111 23444555666677777777777652221 22234
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc----------hH--
Q 005802 394 ILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLV----------LY-- 461 (676)
Q Consensus 394 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~-- 461 (676)
.|..-.+.+-+.|++.+|...++...... ..|..+-+-.+..+.++|+.++|.+++....+++.. .|
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 45555566667777777777776666654 345555566667777777777777777766544321 12
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHC--CCC-------------CCHhHHHHHHHHhhcc---Cc----HHHHHHHHHHc
Q 005802 462 NVMIACYAHHGHEEKAILLFEEMLEK--GIK-------------PDAVTFVAILSAFRHC---GS----VEMGEKYFNSM 519 (676)
Q Consensus 462 ~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~-------------p~~~~~~~ll~~~~~~---g~----~~~a~~~~~~~ 519 (676)
.....+|.+.|++..|++-|....+. .+. .+..+|..+++..-+. .. ...|.+++-.+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l 388 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLEL 388 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 22356677778877777766555431 111 1222333333322111 11 22344444444
Q ss_pred hhhcCCCC-----------CHHHHHHHHHHH---hhcCCHHHHHHHH-Hh----------CC----CCCcHHHHHHHHHH
Q 005802 520 TADYKISP-----------ETDHYACMIDLY---GRANQLEKAIEFM-KS----------IP----TEEDAVILGSFLNV 570 (676)
Q Consensus 520 ~~~~~~~p-----------~~~~~~~l~~~~---~~~g~~~~A~~~~-~~----------~~----~~~~~~~~~~l~~~ 570 (676)
........ +..--..+..-. .+...-+++...- ++ .. .+.|+.....-+
T Consensus 389 ~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL-- 466 (517)
T PF12569_consen 389 HDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKL-- 466 (517)
T ss_pred hcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHHHH--
Confidence 32200000 000001111100 1111111111110 00 00 112222221111
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHH
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
.....-.++|.++++-+.+..|++..+|..-..+|.+.|++--|.+.+.+
T Consensus 467 ~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 467 LKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred hcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 12334578999999999999999999999999999999999999887764
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=3.4e-05 Score=78.44 Aligned_cols=153 Identities=11% Similarity=0.017 Sum_probs=90.3
Q ss_pred CCcchHHHHHH--HHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhcc-------CCCCCC
Q 005802 54 RNVFSWNTIIS--ACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSAD-------EHIRMD 124 (676)
Q Consensus 54 ~~~~~~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-------~~~~p~ 124 (676)
.|..+-.++++ .|.--|+.+.|.+-...+ .+...|..|.+.|.+.++.+ -|.-.+-.|.... ..-.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLD-VAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLD-VAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhcccc-HHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 34555555544 244556666665543332 23445666777676666666 5555555543210 011121
Q ss_pred hhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHh
Q 005802 125 EFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCR 204 (676)
Q Consensus 125 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (676)
.+=..+.......|.+++|+.++++.++. ..|=..|-..|.|++|.++.+.-..-.-..+|.....-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 22223333446778888888888887664 33445667788999998888754432234566666666777
Q ss_pred cCChhHHHHHHhhCC
Q 005802 205 EGEMEMALKTFWRQP 219 (676)
Q Consensus 205 ~g~~~~A~~~~~~~~ 219 (676)
.++.+.|++.|++..
T Consensus 871 r~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAG 885 (1416)
T ss_pred hccHHHHHHHHHhcC
Confidence 788888888887765
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.00 E-value=1e-07 Score=81.66 Aligned_cols=192 Identities=17% Similarity=0.118 Sum_probs=140.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhcc
Q 005802 431 STLVDMYSKCGNMTYAEIIFQNFIERD---LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHC 506 (676)
Q Consensus 431 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 506 (676)
..|.-.|...|++..|..-+++..+.| ..+|..+...|.+.|..+.|.+-|++..+ +.|+ ....|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhC
Confidence 345566777888888888887776443 34677777778888888888888888777 3443 45566666667777
Q ss_pred CcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHH
Q 005802 507 GSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEA 583 (676)
Q Consensus 507 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 583 (676)
|.+++|...|++.... ..-|. ..+|..+..+..++|+.+.|.+.|++.. .+..+.....+.......|++..|...
T Consensus 117 g~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 8888888888887765 22233 6778888888888888888888888776 444666777777888888888888888
Q ss_pred HHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 584 EEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 584 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
+++.....+.........+.+-...|+.+.|.++=..+.+.-
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 888877766666777777777777888888877766666543
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.98 E-value=1.8e-08 Score=94.76 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=34.3
Q ss_pred CHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCCh-hHHHHHHHH
Q 005802 544 QLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNW-AEMGRIRKQ 620 (676)
Q Consensus 544 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 620 (676)
.+.+|..+|+++. .++++.+++.+..++...|++++|+.+++++.+.+|.++.+...++-+....|+. +.+.+++..
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 3444444444443 2233344444444444445555555555555444555554444444444444444 334444444
Q ss_pred HH
Q 005802 621 MR 622 (676)
Q Consensus 621 ~~ 622 (676)
++
T Consensus 262 L~ 263 (290)
T PF04733_consen 262 LK 263 (290)
T ss_dssp CH
T ss_pred HH
Confidence 44
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=5.2e-06 Score=84.07 Aligned_cols=221 Identities=13% Similarity=0.079 Sum_probs=120.6
Q ss_pred CChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC-------------CCcchHHHHHHHHHhcC
Q 005802 4 LNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE-------------RNVFSWNTIISACIKSH 70 (676)
Q Consensus 4 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------~~~~~~~~ll~~~~~~g 70 (676)
|+.+.|.+-...+. +-.+|..+.+.|.+..+++=|.-.+-.|.. ++ ..-..+.-....-|
T Consensus 742 G~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred ccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 56666666555554 234677777777777777777666655542 21 11112222234556
Q ss_pred ChHHHHHHhccCCCCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHH
Q 005802 71 DLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAF 150 (676)
Q Consensus 71 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 150 (676)
.+++|..++++-.+ |..|=+.|-..|.+. +|+++-+.=-+ +. =..||..-..-+-..+|.+.|++.++.
T Consensus 815 MlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~-eA~eiAE~~DR----iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 815 MLEEALILYRQCKR-----YDLLNKLYQSQGMWS-EAFEIAETKDR----IH-LRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred hHHHHHHHHHHHHH-----HHHHHHHHHhcccHH-HHHHHHhhccc----ee-hhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 67777776655332 334444455566666 66666544322 11 122444444444455566666555543
Q ss_pred HHHhcC-------------------CCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHH
Q 005802 151 MVKTSN-------------------DASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMA 211 (676)
Q Consensus 151 ~~~~~~-------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 211 (676)
.-.... ..|...|.=....+-..|+.|.|+.++..... |-++++..|-.|++++|
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------~fs~VrI~C~qGk~~kA 957 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------YFSMVRIKCIQGKTDKA 957 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------hhhheeeEeeccCchHH
Confidence 211100 01111222233333445666666666654332 44566667777777777
Q ss_pred HHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 212 LKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMG 251 (676)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 251 (676)
-++-++-+ |..+...+.+.|-..|++.+|+.+|.+..
T Consensus 958 a~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 958 ARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77766644 55666677777777888888888877654
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=4.1e-06 Score=74.56 Aligned_cols=382 Identities=11% Similarity=0.034 Sum_probs=198.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHH-HHHHH
Q 005802 227 WNTLISGYVQNGDAEEGLKLFVRMGENGVRW-NEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSG-IVDVY 304 (676)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 304 (676)
+.+.+..+++..++.+|++++....+.. | +....+.+..+|....++..|...++++...- |...-|.. -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 3344444445555555555555444432 2 33344444444455555555555555444331 22222211 12334
Q ss_pred HhcCChHHHHHHHHhcCCC-CchhHHHHHH--HHHhcCCHHHHHHHHhccCC-CCchhHHHHHHHHHHcCChHHHHHHHH
Q 005802 305 CKCENMNYAESMLLLKGVR-NSFSISSMIV--GYSLQGNMEEARRHFDSLTE-KNVVVWTALFSGYVKAQNCEALFDLLS 380 (676)
Q Consensus 305 ~~~g~~~~a~~~~~~~~~~-~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~ 380 (676)
.+.+.+..|.++...+... +...-..-+. .....+++..+..+.++.+. .+..+.+.......+.|+++.|++-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 4445555555555555442 1111111111 22345666666677777763 444455555555667777788887777
Q ss_pred HHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChh----------------------------HHHH
Q 005802 381 EFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKK----------------------------LIST 432 (676)
Q Consensus 381 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------------------~~~~ 432 (676)
..++-.|..|- ..|+..+. ..+.++.+.|.....++++.|+...+. .+|.
T Consensus 169 aAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 169 AALQVSGYQPL-LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 77555555553 34444433 335567777777777777665432111 2222
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC-----CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccC
Q 005802 433 LVDMYSKCGNMTYAEIIFQNFIER-----DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCG 507 (676)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 507 (676)
-...+.+.|+++.|.+.+-+|+.+ |++|...+.-.-. .+++.+...-+.-+...+. ....||..++-.||+..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhH
Confidence 333457889999999999999854 7777766543322 3445555555555555432 34578888988999998
Q ss_pred cHHHHHHHHHHchhhcCC-CCCHHHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCcHHHHHHHHHH--HHHhCC---HhHH
Q 005802 508 SVEMGEKYFNSMTADYKI-SPETDHYACMIDLYGRA-NQLEKAIEFMKSIPTEEDAVILGSFLNV--CRLNRN---AELA 580 (676)
Q Consensus 508 ~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~~~~~---~~~a 580 (676)
-++-|-.++-+-..- .. -.+...|+ |++++..+ -..++|.+-+......--.......+.. -...++ ...+
T Consensus 325 yf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~a 402 (459)
T KOG4340|consen 325 YFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKA 402 (459)
T ss_pred HHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 888888877543210 00 01222332 44555443 4667777665554311000011111111 111111 1223
Q ss_pred HHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 581 GEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
++-++..+++. .......+++|.+..++.-+.++|+.-
T Consensus 403 i~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~S 440 (459)
T KOG4340|consen 403 VNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKS 440 (459)
T ss_pred HHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHH
Confidence 33334444331 123566778888999999999988754
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.3e-06 Score=84.48 Aligned_cols=215 Identities=14% Similarity=0.111 Sum_probs=109.6
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---cchHH-------HHHH
Q 005802 397 ILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD---LVLYN-------VMIA 466 (676)
Q Consensus 397 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-------~l~~ 466 (676)
.+.++..+..++..+.+-+....+.. .++.-++....+|...|.+..+...-.+..+.. ..-|+ .+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34444455555666666665555544 444445555566666666555544443332211 11122 2233
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCH-HHHHHHHHHHhhcCCH
Q 005802 467 CYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPET-DHYACMIDLYGRANQL 545 (676)
Q Consensus 467 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 545 (676)
+|.+.++++.|+..|++.......|+.. .+....+++....+... -+.|.. .-...-...+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCH
Confidence 4555667777777777765543333322 12223333333333221 223331 1111224445556666
Q ss_pred HHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 546 EKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 546 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.+|++.+.+++ .+.|...|..-..+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|++|.+.+++..+
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666555 3335555555555666666666666666666666666666666666666666666666666665554
Q ss_pred CC
Q 005802 624 MK 625 (676)
Q Consensus 624 ~~ 625 (676)
..
T Consensus 455 ~d 456 (539)
T KOG0548|consen 455 LD 456 (539)
T ss_pred cC
Confidence 43
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.94 E-value=4.4e-07 Score=91.83 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhc-------------CCCCCHH--HHHHHHHHHh
Q 005802 476 KAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADY-------------KISPETD--HYACMIDLYG 540 (676)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~l~~~~~ 540 (676)
.+...+..+...|+++ +|..|-..|.......-...++....... .-.|+.. ++.-+...|.
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 4445566677777553 34444444554444444444444432211 1123333 3455677788
Q ss_pred hcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHH
Q 005802 541 RANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIR 618 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 618 (676)
..|++++|++++++.. ..| .+..+..-...+.+.|++++|...++.+.++++.|--+....+..+.+.|+.++|.+++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8999999999999887 555 46677788889999999999999999999999998888888889999999999999999
Q ss_pred HHHHhCCC
Q 005802 619 KQMRGMKG 626 (676)
Q Consensus 619 ~~~~~~~~ 626 (676)
....+.+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 88877664
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=1.7e-06 Score=76.99 Aligned_cols=121 Identities=19% Similarity=0.099 Sum_probs=77.4
Q ss_pred hhccchHHHHHhhhhcCCCCchhhHHHHHHH--HHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHH
Q 005802 171 SKCRCYEEACRVFEGCTEEVNLISKNAMVAA--CCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFV 248 (676)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 248 (676)
-+.+.+.+|+++...|...++...-..-+.+ ....+++..+..++++.+...+..+.+.......+.|+++.|++-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 3445555555555555443222222222222 23467778888888887755566666666666678899999999998
Q ss_pred HHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 005802 249 RMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLIS 292 (676)
Q Consensus 249 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 292 (676)
...+-|---....|+..+.. .+.++...|.+...++++.|+..
T Consensus 169 aAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred HHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhc
Confidence 88775433345667766644 46788899999999998888643
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.90 E-value=4.5e-06 Score=75.85 Aligned_cols=301 Identities=12% Similarity=0.099 Sum_probs=162.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHH---HHHhcCCHHHHHHHHhccCCCCchhHHHH---HHHHHHcCCh
Q 005802 299 GIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIV---GYSLQGNMEEARRHFDSLTEKNVVVWTAL---FSGYVKAQNC 372 (676)
Q Consensus 299 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~~~~ 372 (676)
.+...+...|++..|+.-+....+.|+..|.++.+ .|...|+...|+.-+.+..+--+..+.+- ...+.+.|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 34445555666666666666666666666555543 45556666555555555543222222222 2345667777
Q ss_pred HHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 005802 373 EALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQN 452 (676)
Q Consensus 373 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (676)
+.|..-|+..+... |+..+- ..+..+....++- ......+..+...|+...|+..+..
T Consensus 123 e~A~~DF~~vl~~~---~s~~~~---~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 123 EQAEADFDQVLQHE---PSNGLV---LEAQSKLALIQEH----------------WVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred HHHHHHHHHHHhcC---CCcchh---HHHHHHHHhHHHH----------------HHHHHHHHHHhcCCchhhHHHHHHH
Confidence 77777777653221 111100 0000000000000 0111122233445666666666665
Q ss_pred cC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCH
Q 005802 453 FI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPET 529 (676)
Q Consensus 453 ~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 529 (676)
+. ..+...|..-..+|...|++..|+.-+....+.. .-+..++..+-..+...|+.+.++...++.. .+.||.
T Consensus 181 llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdH 256 (504)
T KOG0624|consen 181 LLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDH 256 (504)
T ss_pred HHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcch
Confidence 54 2355566666667777777777766555544421 1233444445555566677766666666554 455652
Q ss_pred -HH---HHHH---------HHHHhhcCCHHHHHHHHHhCC-CCCcH--H---HHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 530 -DH---YACM---------IDLYGRANQLEKAIEFMKSIP-TEEDA--V---ILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 530 -~~---~~~l---------~~~~~~~g~~~~A~~~~~~~~-~~~~~--~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
.. |..| +......++|.++++-.++.. ..|.. . .+..+..++...+++.+|++...++++.
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~ 336 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI 336 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc
Confidence 12 2211 112334556666666655544 33331 1 2334444566777888888888888888
Q ss_pred cCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 591 EGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 591 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
+|+|..++-.-+.+|.-...|++|+.-++...+-+
T Consensus 337 d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 337 DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888776643
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.88 E-value=9e-06 Score=84.32 Aligned_cols=592 Identities=14% Similarity=0.006 Sum_probs=299.5
Q ss_pred hHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHhccC
Q 005802 6 LKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE---RNVFSWNTIISACIKSHDLKQARSLFDSS 82 (676)
Q Consensus 6 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 82 (676)
...|...|=+..+.... -...|..|.+.|+..-+...|...|++.-+ .+...+......|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 34444444444444322 134677777777777777778888777655 45567777777788888888777764322
Q ss_pred CCCC-----cccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCC-ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcC
Q 005802 83 PHKD-----LVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRM-DEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSN 156 (676)
Q Consensus 83 ~~~~-----~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 156 (676)
.+.+ ...|.-.--.|...++.. .++.-|+...+ +.| |...|..+..+|...|++..|.++|......
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h-~aV~~fQsALR----~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLH-GAVCEFQSALR----TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchh-hHHHHHHHHhc----CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 2211 111222333445566666 77777777654 445 5567777777777777777777777666554
Q ss_pred CCCCchhhH--HHHHhhhccchHHHHHhhhhcCCC-C--------chhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCee
Q 005802 157 DASGFAVSS--LIDMYSKCRCYEEACRVFEGCTEE-V--------NLISKNAMVAACCREGEMEMALKTFWRQPELNDAV 225 (676)
Q Consensus 157 ~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~~-~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 225 (676)
.|+. .|.. .....+..|++.+|+..+..+... . -..++-.+...+.-.|-..+|...++... .
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi-----e 699 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI-----E 699 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-----H
Confidence 2322 2222 223345567777777766654431 0 11111111222222222222222222211 1
Q ss_pred eH-HHHHHHHHhcC-C---hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCCh---HH---HHHHHHHHHHhCCCCch
Q 005802 226 SW-NTLISGYVQNG-D---AEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNV---KC---AKEIHSWVLKNGLISNP 294 (676)
Q Consensus 226 ~~-~~li~~~~~~g-~---~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~---a~~~~~~~~~~~~~~~~ 294 (676)
.+ +.++...+... . ...|..+|-... .+ .|+.+...++..-.-..+.. +- +.+.+-.-. ....++
T Consensus 700 ~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~ 775 (1238)
T KOG1127|consen 700 SFIVSLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHM 775 (1238)
T ss_pred HHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhcc
Confidence 11 11111100000 0 112223333222 11 23433333333323222222 10 111110000 111223
Q ss_pred hHHHHHHHHHHh----cC----ChHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhccCC---CCchhHH
Q 005802 295 FVSSGIVDVYCK----CE----NMNYAESMLLLKGV---RNSFSISSMIVGYSLQGNMEEARRHFDSLTE---KNVVVWT 360 (676)
Q Consensus 295 ~~~~~l~~~~~~----~g----~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 360 (676)
..|..|...|.+ .| +...|...+.+... .+...|+.|... ...|++.-|.-.|-+-.. ....+|.
T Consensus 776 ~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~ 854 (1238)
T KOG1127|consen 776 YPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWL 854 (1238)
T ss_pred chHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhhee
Confidence 333333333332 22 22355566655443 456667766555 555677766666654432 3455677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHH--HH--cCCCCChhHHHHHHHH
Q 005802 361 ALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYI--LR--MGVQMDKKLISTLVDM 436 (676)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~--~~~~~~~~~~~~l~~~ 436 (676)
.+.-.+.+..+++.|...|... ..-.+.|...+..........|+.-+...++..- .. .|--++..-+-+-...
T Consensus 855 NlgvL~l~n~d~E~A~~af~~~--qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~ 932 (1238)
T KOG1127|consen 855 NLGVLVLENQDFEHAEPAFSSV--QSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI 932 (1238)
T ss_pred ccceeEEecccHHHhhHHHHhh--hhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence 7777778888888888888864 2222334444444444444556666666666542 22 1223344344444444
Q ss_pred HHhcCCHHHHHHHHhhcC-------------CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHhHHHH----
Q 005802 437 YSKCGNMTYAEIIFQNFI-------------ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEK-GIKPDAVTFVA---- 498 (676)
Q Consensus 437 ~~~~g~~~~A~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~---- 498 (676)
....|+.++-...-+++. ......|.+.....-+.+.+..|.++..+.+.- -.+-+..+|+.
T Consensus 933 h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~ 1012 (1238)
T KOG1127|consen 933 HLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPD 1012 (1238)
T ss_pred HHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 555666655554444432 123456666666666677777777766664420 01234444443
Q ss_pred HHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCcH-HHHHHHHHHHHH
Q 005802 499 ILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP----TEEDA-VILGSFLNVCRL 573 (676)
Q Consensus 499 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~l~~~~~~ 573 (676)
+.+.++..|.++.|..-+..... ..+..+...-+.. .=.++++++.+.|+++. ...+. ..+..++.+...
T Consensus 1013 ~gRL~lslgefe~A~~a~~~~~~----evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~ 1087 (1238)
T KOG1127|consen 1013 AGRLELSLGEFESAKKASWKEWM----EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGL 1087 (1238)
T ss_pred hhhhhhhhcchhhHhhhhcccch----hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhh
Confidence 23345556777766554433211 1111111111111 23578888888888877 22232 234445555667
Q ss_pred hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 574 NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 574 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.+..+.|...+-+.....|.+......|..++.-..+-..-..+.+++.+
T Consensus 1088 ~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~k 1137 (1238)
T KOG1127|consen 1088 ARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEK 1137 (1238)
T ss_pred cccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 77888888888888888777777777777777666655555555555543
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=1.6e-07 Score=88.39 Aligned_cols=225 Identities=11% Similarity=0.061 Sum_probs=146.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCC-CChhHHHHHHHHH
Q 005802 359 WTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQ-MDKKLISTLVDMY 437 (676)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 437 (676)
..-+.+++...|+++.++.-+ .. +..|.......+...+....+-+.+..-+......... .+..........+
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~ei----~~-~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLSEI----KK-SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS-----T-TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHh----cc-CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 344556677777766544322 22 22555555544444333323333333222222212222 2333333344566
Q ss_pred HhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc----cCcHHHHH
Q 005802 438 SKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRH----CGSVEMGE 513 (676)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~ 513 (676)
...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. ...+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHH
Confidence 7789999999988876 45666777889999999999999999999874 333 444445554432 34699999
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCH-hHHHHHHHHHHcc
Q 005802 514 KYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNA-ELAGEAEEKLLRL 590 (676)
Q Consensus 514 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 590 (676)
.+|+++.. ...+++.+.+.+..++...|++++|.+++++.. .+.++.++..++-+....|+. +.+.+.+.++...
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999965 446788999999999999999999999999877 455777888888888888887 7788899999988
Q ss_pred cCCCC
Q 005802 591 EGNNK 595 (676)
Q Consensus 591 ~p~~~ 595 (676)
+|.++
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 88854
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=1.3e-07 Score=91.97 Aligned_cols=216 Identities=13% Similarity=0.151 Sum_probs=168.8
Q ss_pred HhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHH
Q 005802 403 ALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAIL 479 (676)
Q Consensus 403 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 479 (676)
.+.|++.+|.-.|+...+.. |-+...|.-|.......++-..|+.-+.+..+ .|.....+|...|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 35666777776776666654 55677777788888888888888888877653 356677788888999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHH-----------HHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHH
Q 005802 480 LFEEMLEKGIKPDAVTFVAIL-----------SAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKA 548 (676)
Q Consensus 480 ~~~~m~~~g~~p~~~~~~~ll-----------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 548 (676)
.++.-+... |. |..+. ..+.......+..++|-.+....+..+|+.+...|.-.|.-.|++++|
T Consensus 375 ~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 998876632 11 11111 122333345566666666655546668889999999999999999999
Q ss_pred HHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 549 IEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 549 ~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
++.|+.+. .+| |...|+.|+..+....+.++|+..|.+++++.|.-......|+..|...|.|++|.+.+=.+...
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999988 444 77899999999999999999999999999999999999999999999999999999988777654
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.81 E-value=3.3e-07 Score=85.28 Aligned_cols=181 Identities=10% Similarity=-0.042 Sum_probs=114.5
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-c---chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh----
Q 005802 425 MDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--RD-L---VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV---- 494 (676)
Q Consensus 425 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---- 494 (676)
.....+..+...+...|+++.|...|+++.. |+ . ..+..+..++...|++++|...++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 3445556666677777777777777776652 21 1 24556667777777777777777777763 23221
Q ss_pred HHHHHHHHhhcc--------CcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHH
Q 005802 495 TFVAILSAFRHC--------GSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILG 565 (676)
Q Consensus 495 ~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 565 (676)
++..+..++... |+++.|.+.++.+... .|+ ...+..+..... ..... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHH
Confidence 334444444433 5667777777777643 343 222222111100 00000 00112
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcccCCCC---ccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRLEGNNK---ARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
.+...+...|++++|+..++++++..|+++ ..+..++.++...|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455678899999999999999999977654 678999999999999999999999887653
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.4e-05 Score=77.63 Aligned_cols=248 Identities=15% Similarity=0.065 Sum_probs=159.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCC------hhHHHH
Q 005802 359 WTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMD------KKLIST 432 (676)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 432 (676)
+..+.++..+..++..|++-+...+.. .-+..-++..-.++...+....+...-....+.|...- ...+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el---~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALEL---ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhH---hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 445666666777777777777765322 23334444455556666665555544444444332110 111222
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCcHHH
Q 005802 433 LVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV-TFVAILSAFRHCGSVEM 511 (676)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 511 (676)
+..+|.+.++++.+...|++...+... -....+....++++...+...- +.|... -...=...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 445777788899999999885432111 1122333445666665555544 334431 12223566888999999
Q ss_pred HHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 005802 512 GEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLL 588 (676)
Q Consensus 512 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 588 (676)
|+..|.+++.+ .|+ ...|....-+|.+.|.+..|++-.+... .++....|..-+.++....+|+.|.+.|.+++
T Consensus 377 Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 377 AVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 465 8899999999999999999998877766 34444556555667788889999999999999
Q ss_pred cccCCCCccHHHHHHHHHhcCChhHHHHHHH
Q 005802 589 RLEGNNKARYVQLANVYAAEGNWAEMGRIRK 619 (676)
Q Consensus 589 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 619 (676)
+.+|.+......+..++......+...++.+
T Consensus 454 e~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred hcCchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 9999998887777777765433333334433
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.79 E-value=2.8e-07 Score=81.83 Aligned_cols=147 Identities=14% Similarity=0.194 Sum_probs=112.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcC
Q 005802 465 IACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRAN 543 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 543 (676)
+..|...|+++.+....+.+.. |. ..+...++.+++...++..... .|+ ...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCC
Confidence 3456777887776544433221 11 0122366777888777777643 444 888999999999999
Q ss_pred CHHHHHHHHHhCC--CCCcHHHHHHHHHHH-HHhCC--HhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHH
Q 005802 544 QLEKAIEFMKSIP--TEEDAVILGSFLNVC-RLNRN--AELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIR 618 (676)
Q Consensus 544 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 618 (676)
++++|...+++.. .+.+...+..+..++ ...|+ .++|.++++++++.+|+++..+..|+..+.+.|++++|...|
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999887 445777777777764 66676 599999999999999999999999999999999999999999
Q ss_pred HHHHhCCC
Q 005802 619 KQMRGMKG 626 (676)
Q Consensus 619 ~~~~~~~~ 626 (676)
+++.+...
T Consensus 168 ~~aL~l~~ 175 (198)
T PRK10370 168 QKVLDLNS 175 (198)
T ss_pred HHHHhhCC
Confidence 99987655
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.76 E-value=2.5e-07 Score=77.60 Aligned_cols=95 Identities=7% Similarity=-0.149 Sum_probs=64.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG 609 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 609 (676)
+..+...+...|++++|...|+... .+.+...|..+..++...|++++|+..|+++.+.+|+++..+..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 4445666666777777777776665 34456666667677777777777777777777777777777777777777777
Q ss_pred ChhHHHHHHHHHHhCCC
Q 005802 610 NWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 610 ~~~~A~~~~~~~~~~~~ 626 (676)
++++|...++...+..+
T Consensus 107 ~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 107 EPGLAREAFQTAIKMSY 123 (144)
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 77777777776665443
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=1.6e-05 Score=79.38 Aligned_cols=258 Identities=12% Similarity=-0.020 Sum_probs=150.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHh----hcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 005802 364 SGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACAL----QAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSK 439 (676)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (676)
..+...|++++|...+++.+.. .+.+...+.. ...+.. .+....+...+.. .....+........+...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 3455677888888888776333 2223323221 112222 2333334443333 111112223344455667888
Q ss_pred cCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCH--hHHHHHHHHhhccCcHHHHH
Q 005802 440 CGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGI-KPDA--VTFVAILSAFRHCGSVEMGE 513 (676)
Q Consensus 440 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~ 513 (676)
.|++++|...+++... .+...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 8999999888887752 3456777888888899999999999988876422 1222 23456777788899999999
Q ss_pred HHHHHchhhcCCCCCHHHH-H--HHHHHHhhcCCHHHHHHH--H-HhCC-CCC---cHHHHHHHHHHHHHhCCHhHHHHH
Q 005802 514 KYFNSMTADYKISPETDHY-A--CMIDLYGRANQLEKAIEF--M-KSIP-TEE---DAVILGSFLNVCRLNRNAELAGEA 583 (676)
Q Consensus 514 ~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 583 (676)
.++++........+..... + .++.-+...|....+..+ + .... ..| ..........++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9998875321111222111 1 223333334433222222 1 1111 101 111222455577888899999999
Q ss_pred HHHHHcccCC---------CCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 584 EEKLLRLEGN---------NKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 584 ~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
++.+...... ........+.++...|++++|.+.+.......
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9888764211 23445677788899999999999999887643
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.70 E-value=0.00012 Score=66.89 Aligned_cols=191 Identities=15% Similarity=0.105 Sum_probs=126.8
Q ss_pred HHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHH
Q 005802 401 ACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKA 477 (676)
Q Consensus 401 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 477 (676)
.+...|+...+......+++.. +.+...+..-..+|...|++..|+.-+.... ..+....--+-..+...|+.+.+
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 3344555666666666655543 5566666666777777777777765554433 33555555566666777777777
Q ss_pred HHHHHHHHHCCCCCCHhH----HHHH---H------HHhhccCcHHHHHHHHHHchhhcCCCCC-----HHHHHHHHHHH
Q 005802 478 ILLFEEMLEKGIKPDAVT----FVAI---L------SAFRHCGSVEMGEKYFNSMTADYKISPE-----TDHYACMIDLY 539 (676)
Q Consensus 478 ~~~~~~m~~~g~~p~~~~----~~~l---l------~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~ 539 (676)
+...++..+ +.||... |..| . ......++|.++.+..+...+. .|. ...+..+-.++
T Consensus 243 L~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 243 LKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecc
Confidence 777777766 4565432 1111 1 1233457777887777777643 344 23455666777
Q ss_pred hhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 540 GRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 540 ~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
...|++-+|+....++. ..| |..++..-..+|....+|+.|+.-|+++.+.++++..+
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 88899999999988887 444 46677777788999999999999999999999887544
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=3.4e-07 Score=76.75 Aligned_cols=122 Identities=12% Similarity=0.052 Sum_probs=102.2
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 005802 479 LLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP- 556 (676)
Q Consensus 479 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 556 (676)
.++++..+ +.|+. +..+..++...|++++|...|+... ...|+ ...|..+..++.+.|++++|...|+++.
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45556555 34553 5556778889999999999999987 44565 8889999999999999999999999988
Q ss_pred -CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh
Q 005802 557 -TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 557 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
.+.++..+..++.++...|++++|+..++++++..|+++..+...+.+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 556888999999999999999999999999999999999999888777653
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.69 E-value=0.00039 Score=67.75 Aligned_cols=175 Identities=14% Similarity=0.143 Sum_probs=124.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHH
Q 005802 371 NCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQM-DKKLISTLVDMYSKCGNMTYAEII 449 (676)
Q Consensus 371 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 449 (676)
..+.....+++.+....+.|+ .+|...++...+..-+..|+.+|.++.+.+..+ +..+.++++..|| .++.+-|.++
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 356666777776444455555 456667777778888889999999999887766 7778888888777 4778888888
Q ss_pred HhhcCC--CCcch-HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHhhccCcHHHHHHHHHHchhhcC
Q 005802 450 FQNFIE--RDLVL-YNVMIACYAHHGHEEKAILLFEEMLEKGIKPD--AVTFVAILSAFRHCGSVEMGEKYFNSMTADYK 524 (676)
Q Consensus 450 ~~~~~~--~~~~~-~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 524 (676)
|+--.+ +|... -...+.-+...++-..+..+|++....++.|+ ...|..++.--+.-|+...+.++-+++...+.
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 886553 34443 35567777888888999999999988876766 46788899888888999998888887765443
Q ss_pred --CCCCHHHHHHHHHHHhhcCCHHH
Q 005802 525 --ISPETDHYACMIDLYGRANQLEK 547 (676)
Q Consensus 525 --~~p~~~~~~~l~~~~~~~g~~~~ 547 (676)
..|....-..+++-|.=.+....
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hhhcCCCChHHHHHHHHhhcccccc
Confidence 33333333445555555554433
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.67 E-value=1.7e-06 Score=92.45 Aligned_cols=199 Identities=13% Similarity=0.122 Sum_probs=170.1
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhH
Q 005802 424 QMDKKLISTLVDMYSKCGNMTYAEIIFQNFIER--------DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVT 495 (676)
Q Consensus 424 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 495 (676)
|.+...|-..|......++.++|+++.++..+. -...|.++++.....|.-+...++|++..+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 555667888888889999999999999877532 3457999998888889889999999999873 223456
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---cHHHHHHHHHHH
Q 005802 496 FVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEE---DAVILGSFLNVC 571 (676)
Q Consensus 496 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~ 571 (676)
|..|...|.+.+.+++|.++++.|.++++ -....|..+++.+.++.+-++|..++.++. .-| .......++..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999998766 567889999999999999999999998877 223 455666777788
Q ss_pred HHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 572 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.+.||.+++..+|+..+...|.-...|..+++.-.+.|+.+.++.+|++....++
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999999999999999999999988765
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.63 E-value=2.9e-06 Score=89.43 Aligned_cols=131 Identities=13% Similarity=0.064 Sum_probs=78.4
Q ss_pred CCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHH
Q 005802 490 KPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGS 566 (676)
Q Consensus 490 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ 566 (676)
..+...+..|.....+.|.+++|..+++... .+.|+ ......++..+.+.+++++|+..+++.. ..| +......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 3345555555666666666666666666665 34555 4555556666666666666666666655 223 3444455
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+..++...|++++|..+|+++...+|+++..+..++.++...|+.++|...|+...+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555566666666666666666666666666666666666666666666666666543
No 110
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.61 E-value=1.3e-06 Score=71.56 Aligned_cols=96 Identities=9% Similarity=-0.044 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
....-.+...+...|++++|.++|+-.. .+-+...|..|..+|...|++++|+..|.++..++|++|.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 5555667788889999999999999877 45578889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005802 607 AEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~ 624 (676)
..|+.+.|++.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988753
No 111
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.60 E-value=0.00011 Score=73.39 Aligned_cols=266 Identities=11% Similarity=0.026 Sum_probs=166.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHH-HHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHH---
Q 005802 357 VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVI-LLGACALQAALHPGKEIHAYILRMGVQMDKKLIST--- 432 (676)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 432 (676)
..|..+...+...|+.+.+...+..........++...... ....+...|+++.|..+++...+.. |.+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 35566666677778888877777665333333334322222 2334567889999999999888764 444434331
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCc---chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcH
Q 005802 433 LVDMYSKCGNMTYAEIIFQNFIERDL---VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSV 509 (676)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 509 (676)
........+..+.+.+.+......+. .....+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 22222234566666666665332222 233455667889999999999999999853 23456677788889999999
Q ss_pred HHHHHHHHHchhhcCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHH------HHHHHHHHhCCHhHH
Q 005802 510 EMGEKYFNSMTADYKISPET--DHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILG------SFLNVCRLNRNAELA 580 (676)
Q Consensus 510 ~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~------~l~~~~~~~~~~~~a 580 (676)
++|..+++.........|+. ..|..+...+...|++++|..++++.. ..|....+. .++.-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 99999999887542222332 346678899999999999999999975 223111111 223333444543333
Q ss_pred HHH---HHHHHcccCCCC--ccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 581 GEA---EEKLLRLEGNNK--ARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 581 ~~~---~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
.+. ........|... ....+.+.++...|+.++|...++.+...
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 333 122111112211 22236777888999999999999998764
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.58 E-value=0.00011 Score=83.69 Aligned_cols=321 Identities=11% Similarity=0.012 Sum_probs=177.5
Q ss_pred HHhcCChHHHHHHHHhcCC----CCchhHHHHHHHHHhcCCHHHHHHHHhccCC----CC---c-----hhHHHHHHHHH
Q 005802 304 YCKCENMNYAESMLLLKGV----RNSFSISSMIVGYSLQGNMEEARRHFDSLTE----KN---V-----VVWTALFSGYV 367 (676)
Q Consensus 304 ~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~---~-----~~~~~li~~~~ 367 (676)
....|+.+.+...+..+.. .++.........+...|+++++..++..... .+ . .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445566666555555421 1222223334445566777777776654421 11 1 11122233455
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCH----hHHHHHHHHHHhhcChhHHHHHHHHHHHcCC---CC--ChhHHHHHHHHHH
Q 005802 368 KAQNCEALFDLLSEFVTKEGVVTDA----LILVILLGACALQAALHPGKEIHAYILRMGV---QM--DKKLISTLVDMYS 438 (676)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 438 (676)
..|++++|...+++.+..... .+. .....+...+...|+++.|...+.......- .+ .......+...+.
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPL-TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678888888888776332111 111 2233444455667888888777766654211 11 1223445566677
Q ss_pred hcCCHHHHHHHHhhcCC-------CC----cchHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCC--HhHHHHHHHHh
Q 005802 439 KCGNMTYAEIIFQNFIE-------RD----LVLYNVMIACYAHHGHEEKAILLFEEMLEK--GIKPD--AVTFVAILSAF 503 (676)
Q Consensus 439 ~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~~~ 503 (676)
..|+++.|...+++... ++ ...+..+...+...|++++|...+.+.... ...+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 78888888777665431 11 112334455566678888888888776542 11122 22333445566
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCCHHHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CcHH----HHHHHHHHHH
Q 005802 504 RHCGSVEMGEKYFNSMTADYKISPETDHY-----ACMIDLYGRANQLEKAIEFMKSIPTE--EDAV----ILGSFLNVCR 572 (676)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~l~~~~~ 572 (676)
...|+++.|.+.++....-.........+ ...+..+...|+.+.|.+++...... .... .+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 77888888888877764321111110101 11123345578888888887665511 1111 1345555677
Q ss_pred HhCCHhHHHHHHHHHHcccCC------CCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 573 LNRNAELAGEAEEKLLRLEGN------NKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 573 ~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
..|++++|...++++.+.... ....+..++.++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 788888888888888765211 12356677788888888888888888877643
No 113
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=4.5e-05 Score=67.30 Aligned_cols=176 Identities=10% Similarity=0.028 Sum_probs=121.4
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005802 413 EIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD 492 (676)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 492 (676)
.+.+.+.......+......-...|+..|++++|.+..+... +......=+..+.+..+.+-|.+.+++|.+- -+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 345555555444444444444566788888888888887733 3333333345567777888888888888862 35
Q ss_pred HhHHHHHHHHhhc----cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHH
Q 005802 493 AVTFVAILSAFRH----CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGS 566 (676)
Q Consensus 493 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 566 (676)
..|.+.|.+++.+ .+.+.+|.-+|++|.+ +..|+..+.+-..-++...|++++|..++++.. ...++.++..
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 6777767666543 4568888889998864 467888888888888888889999988888887 4456777776
Q ss_pred HHHHHHHhC-CHhHHHHHHHHHHcccCCCC
Q 005802 567 FLNVCRLNR-NAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 567 l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~ 595 (676)
++-+....| +.+--.+...++....|.++
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 666555555 44566677777777777754
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.55 E-value=1e-06 Score=73.77 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=81.1
Q ss_pred CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHH
Q 005802 525 ISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQL 601 (676)
Q Consensus 525 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 601 (676)
..|+ ......+...+...|++++|.+.++... .+.++..+..+...+...|++++|...++++.+..|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3454 4556677777888888888888888775 445677788888888888888899888888888888888888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 005802 602 ANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 602 ~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
+.+|...|++++|...++...+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 999999999999999888877653
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=1.4e-05 Score=80.38 Aligned_cols=189 Identities=16% Similarity=0.111 Sum_probs=133.3
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 005802 422 GVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILS 501 (676)
Q Consensus 422 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 501 (676)
+.+|-...-..+...+...|-...|..+|+++. .|.-.+.+|+..|+..+|..+..+-.+ -+||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 345555556667778888888888888888754 667778888888888888888777776 3677778887777
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhH
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAEL 579 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 579 (676)
......-+++|.++.+....+ .-..+.....+.++++++.+.++... .+-...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 777777777777777755332 11122233334677777777776654 33456677777777777777777
Q ss_pred HHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 580 AGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 580 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
|...|.....+.|++...|+.+..+|.+.|+..+|...+++..+-+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 7777777777777777777777777777777777777777776654
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=8e-08 Score=56.75 Aligned_cols=33 Identities=39% Similarity=0.504 Sum_probs=25.5
Q ss_pred CCCCCcccHHHHHHHHHhCCCchHHHHHhccCC
Q 005802 20 GLTLTTITTNQLIHIYSKHNLLRESRKLFDEMP 52 (676)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 52 (676)
|++||..+|+.||.+||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677777788888877777777777777777764
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=8.1e-06 Score=72.52 Aligned_cols=154 Identities=12% Similarity=0.118 Sum_probs=117.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHH
Q 005802 434 VDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGE 513 (676)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 513 (676)
+..|...|+++.+....+.+..+. . .+...++.+++...+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888877655544332221 0 1123567788888888877753 446778888999999999999999
Q ss_pred HHHHHchhhcCCCCC-HHHHHHHHHHH-hhcCC--HHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 005802 514 KYFNSMTADYKISPE-TDHYACMIDLY-GRANQ--LEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKL 587 (676)
Q Consensus 514 ~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 587 (676)
..|++.. .+.|+ ...+..+..++ .+.|+ .++|.+++++.. .+.+...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999887 44565 88888888864 67777 599999999988 4557788888989999999999999999999
Q ss_pred HcccCCCCccHH
Q 005802 588 LRLEGNNKARYV 599 (676)
Q Consensus 588 ~~~~p~~~~~~~ 599 (676)
.+..|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999888765443
No 118
>PLN02789 farnesyltranstransferase
Probab=98.51 E-value=3.3e-05 Score=73.86 Aligned_cols=212 Identities=7% Similarity=0.039 Sum_probs=136.7
Q ss_pred cChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCC--hhHHHH
Q 005802 406 AALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCG-NMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGH--EEKAIL 479 (676)
Q Consensus 406 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~--~~~A~~ 479 (676)
+..+.|..+...+++.. +-+..+++....++...| ++++++..++++.+ .+..+|+.....+.+.|+ .++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 34444444444444433 223334443444444445 46777777776653 244456554444455554 267788
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhc---CC----HHHHHHHH
Q 005802 480 LFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRA---NQ----LEKAIEFM 552 (676)
Q Consensus 480 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~~ 552 (676)
+++++++.. +-|...|.....++...|+++++++.++++.+. . .-+...|+....++.+. |. .++++++.
T Consensus 130 ~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 130 FTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 888888743 235677887777888888899999999988754 2 22366666666555444 22 24667777
Q ss_pred HhCC--CCCcHHHHHHHHHHHHHh----CCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC-----------------
Q 005802 553 KSIP--TEEDAVILGSFLNVCRLN----RNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG----------------- 609 (676)
Q Consensus 553 ~~~~--~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------------- 609 (676)
.++. .+.+...|+.+...+... +...+|...+.++.+..|.++.....|+++|....
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 5555 455778888888888773 34567889999988889999889999999998642
Q ss_pred -ChhHHHHHHHHH
Q 005802 610 -NWAEMGRIRKQM 621 (676)
Q Consensus 610 -~~~~A~~~~~~~ 621 (676)
..++|.++++.+
T Consensus 287 ~~~~~a~~~~~~l 299 (320)
T PLN02789 287 SDSTLAQAVCSEL 299 (320)
T ss_pred ccHHHHHHHHHHH
Confidence 236677777777
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.51 E-value=3.8e-06 Score=84.24 Aligned_cols=219 Identities=11% Similarity=0.018 Sum_probs=156.9
Q ss_pred CCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCcchHHHHHH
Q 005802 389 VTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI--ERDLVLYNVMIA 466 (676)
Q Consensus 389 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~ 466 (676)
+|-...-..+...+...|-...|..+++.+. .+...+.+|+..|+..+|..+...-. +|+...|..+.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence 3333344444555566666677777666543 34567778888888888877766544 456677777777
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCH
Q 005802 467 CYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQL 545 (676)
Q Consensus 467 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 545 (676)
.....--++.|.++.+..... .-..+.....+.++++++.+.|+.-.+ +.|- ..+|-.+.-+..+.+++
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhh
Confidence 766666677777777654432 111122223346888888888887653 3443 77788888888888999
Q ss_pred HHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 546 EKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 546 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+.|.+.|.... .+.+...|+++-.+|.+.++-.+|...+.++.+-+-.+..+|.....+...-|.|++|.+.+.++..
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99998888877 4446678999999999999999999999999988888888888888888899999999999888876
Q ss_pred CCC
Q 005802 624 MKG 626 (676)
Q Consensus 624 ~~~ 626 (676)
...
T Consensus 616 ~~~ 618 (777)
T KOG1128|consen 616 LRK 618 (777)
T ss_pred hhh
Confidence 544
No 120
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.50 E-value=0.00048 Score=78.37 Aligned_cols=259 Identities=10% Similarity=0.004 Sum_probs=159.3
Q ss_pred HHHhcCCHHHHHHHHhccCC----CCc----hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC----CCCHhHHHHHHHH
Q 005802 334 GYSLQGNMEEARRHFDSLTE----KNV----VVWTALFSGYVKAQNCEALFDLLSEFVTKEGV----VTDALILVILLGA 401 (676)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~p~~~~~~~ll~~ 401 (676)
.+...|++++|...+++... .+. ...+.+...+...|++++|...+.+......- .+...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 34566777777777665432 111 23455556677788888888888776322111 1112334455556
Q ss_pred HHhhcChhHHHHHHHHHHHc----CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC------C--CcchHHHHHH
Q 005802 402 CALQAALHPGKEIHAYILRM----GVQM---DKKLISTLVDMYSKCGNMTYAEIIFQNFIE------R--DLVLYNVMIA 466 (676)
Q Consensus 402 ~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~l~~ 466 (676)
+...|+++.|...+...... +... ....+..+...+...|++++|...+.+... + ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 77788888888877665542 2211 122344556667778999999888876531 1 1223444566
Q ss_pred HHHHcCChhHHHHHHHHHHHCC--CCCCHh--HH--HHHHHHhhccCcHHHHHHHHHHchhhcCCCCC---HHHHHHHHH
Q 005802 467 CYAHHGHEEKAILLFEEMLEKG--IKPDAV--TF--VAILSAFRHCGSVEMGEKYFNSMTADYKISPE---TDHYACMID 537 (676)
Q Consensus 467 ~~~~~~~~~~A~~~~~~m~~~g--~~p~~~--~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~ 537 (676)
.+...|+.++|...+++..... ...... .. ...+..+...|+.+.|..++...... ..... ...+..+..
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHH
Confidence 7788999999999988875421 111110 10 11123345578999999998776432 11111 112346777
Q ss_pred HHhhcCCHHHHHHHHHhCC-------CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 538 LYGRANQLEKAIEFMKSIP-------TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 538 ~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
++...|+.++|...+++.. ... ...+...+..++...|+.++|...+.++.+....
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 8889999999999988875 111 1224555666888999999999999999988543
No 121
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=2.3e-07 Score=54.76 Aligned_cols=32 Identities=25% Similarity=0.537 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005802 524 KISPETDHYACMIDLYGRANQLEKAIEFMKSI 555 (676)
Q Consensus 524 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 555 (676)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.46 E-value=2e-05 Score=69.56 Aligned_cols=155 Identities=10% Similarity=0.043 Sum_probs=94.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh
Q 005802 462 NVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR 541 (676)
Q Consensus 462 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 541 (676)
..+-..+...|+-+....+..+.... ..-|......++....+.|++..|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33444555556666666555554331 122333444455666666777777766666643 334446666666666777
Q ss_pred cCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHH
Q 005802 542 ANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRK 619 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 619 (676)
.|+.++|..-|.+.. .+.++...+.+...+.-.|+.+.|..++..+....+.+..+-..|+-+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777776666665554 344566666666666677777777777776666666666666666666667777776666553
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.46 E-value=6.3e-06 Score=72.65 Aligned_cols=136 Identities=10% Similarity=0.050 Sum_probs=116.2
Q ss_pred CCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHH
Q 005802 489 IKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGS 566 (676)
Q Consensus 489 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 566 (676)
..|+......+-..+...|+-+....+...... ...-+......++....+.|++.+|+..+++.. .++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 356544335566777888988888888887643 233346677779999999999999999999988 7789999999
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
+..+|-+.|+++.|...|.+++++.|.++.+...|+..|.-.|++++|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999887655
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.45 E-value=1.1e-05 Score=74.98 Aligned_cols=182 Identities=13% Similarity=0.028 Sum_probs=126.2
Q ss_pred CCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ccc---
Q 005802 389 VTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDK---KLISTLVDMYSKCGNMTYAEIIFQNFIE--R-DLV--- 459 (676)
Q Consensus 389 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~--- 459 (676)
......+..+...+...|+++.|...++.+.... +.++ ..+..+..++.+.|+++.|...++++.+ | +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3345667777788889999999999999988764 2222 4667788999999999999999998863 3 222
Q ss_pred hHHHHHHHHHHc--------CChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHH
Q 005802 460 LYNVMIACYAHH--------GHEEKAILLFEEMLEKGIKPDAV-TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETD 530 (676)
Q Consensus 460 ~~~~l~~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 530 (676)
++..+..++... |+.++|.+.|+++... .|+.. ....+.... . .. ... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~------~~~---------~~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LR------NRL---------AG 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HH------HHH---------HH
Confidence 455555666554 7789999999999874 45432 222111110 0 00 000 01
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccC
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP-TEE----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEG 592 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 592 (676)
....+...+.+.|++++|+..+++.. ..| .+..+..++.++...|++++|...++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 12256677888999999999888876 222 346788888899999999999998888877665
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.41 E-value=5.6e-05 Score=81.46 Aligned_cols=220 Identities=15% Similarity=0.138 Sum_probs=169.5
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhcCCC--------CchhHHHHHHHHHhcCCHHHHHHHHhccCCC-C-chhHH
Q 005802 291 ISNPFVSSGIVDVYCKCENMNYAESMLLLKGVR--------NSFSISSMIVGYSLQGNMEEARRHFDSLTEK-N-VVVWT 360 (676)
Q Consensus 291 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~ 360 (676)
+.+...|-..|......++.+.|+++.++.... -...|.++++.....|.-+...++|+++.+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 345567777788888888888888877665531 2357888888888888888889999998763 3 35688
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCC-CChhHHHHHHHHHHh
Q 005802 361 ALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQ-MDKKLISTLVDMYSK 439 (676)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 439 (676)
.|...|.+.+.+++|.++|+.|+.+-+ -....|...+..+.+.++-+.|..++.++.+.-.. -......-.+.+-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999976665 55667888888888888889999999888876422 234555666778888
Q ss_pred cCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHhhccCcHHHH
Q 005802 440 CGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA--VTFVAILSAFRHCGSVEMG 512 (676)
Q Consensus 440 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a 512 (676)
.|+.+++..+|+.... .-...|+..++.-.++|+.+.+..+|++.+..++.|-. ..|...+..-.+.|+-..+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 9999999999998763 25668999999999999999999999999998887753 4566666655555654433
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=2.4e-05 Score=68.39 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=52.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 005802 471 HGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIE 550 (676)
Q Consensus 471 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 550 (676)
.|++++|+++++.+.+.. +.|..++..=+...-..|+.-+|++-+....+ .+.-|...|..+...|...|++++|.-
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 445555555555555443 22333343333333334444444444444433 223344555555555555555555555
Q ss_pred HHHhCC-CCC-cHHHHHHHHHHHHHhC---CHhHHHHHHHHHHcccC
Q 005802 551 FMKSIP-TEE-DAVILGSFLNVCRLNR---NAELAGEAEEKLLRLEG 592 (676)
Q Consensus 551 ~~~~~~-~~~-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p 592 (676)
.++++. ..| ++..+..+...+...| +.+.+..+|+++++++|
T Consensus 176 ClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 176 CLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 555544 222 3333334443332222 34445555555555544
No 127
>PLN02789 farnesyltranstransferase
Probab=98.37 E-value=4.5e-05 Score=72.95 Aligned_cols=190 Identities=8% Similarity=0.052 Sum_probs=142.5
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCc-
Q 005802 434 VDMYSKCGNMTYAEIIFQNFIER---DLVLYNVMIACYAHHG-HEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGS- 508 (676)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~- 508 (676)
-..+...+..++|..+..++++. +..+|+....++...| ++++++..++++.+... -+..+|+.-...+.+.|.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCch
Confidence 33445567888999999888744 3445665566666777 57999999999998542 244556655555555565
Q ss_pred -HHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHh---CC----H
Q 005802 509 -VEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLN---RN----A 577 (676)
Q Consensus 509 -~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~----~ 577 (676)
.+++..+++.+.+. .|. ...|.....++.+.|+++++++.++++. .+.+...|+....++... |. .
T Consensus 123 ~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 36788899888743 454 8889999999999999999999999998 455777888777766554 22 3
Q ss_pred hHHHHHHHHHHcccCCCCccHHHHHHHHHhc----CChhHHHHHHHHHHhCCCc
Q 005802 578 ELAGEAEEKLLRLEGNNKARYVQLANVYAAE----GNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 578 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~ 627 (676)
+.++....++++.+|+|.++|..+..++... ++..+|.++..+..+.+++
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 5788888899999999999999999999883 4567788888887765554
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=0.00013 Score=70.40 Aligned_cols=113 Identities=19% Similarity=0.157 Sum_probs=73.6
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCc-HHHHHHHHHHHHHhCCHhH
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEED-AVILGSFLNVCRLNRNAEL 579 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~ 579 (676)
+...|++++|+..++.+... .|+ +..+....+.+.+.++.++|.+.++++. ..|+ +..+..+..++.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34556777777777776642 344 5555566677777777777777777766 3443 5566666667777777777
Q ss_pred HHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHH
Q 005802 580 AGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIR 618 (676)
Q Consensus 580 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 618 (676)
|+..++.....+|+++..|..|+.+|...|+..+|....
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 777777777777777777777777766665544444433
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.35 E-value=5.8e-06 Score=80.49 Aligned_cols=123 Identities=16% Similarity=0.172 Sum_probs=102.2
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHH
Q 005802 496 FVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRL 573 (676)
Q Consensus 496 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 573 (676)
...|+..+...++++.|..+++++.+. .|+. ...++..+...++-.+|++++.+.. .+.+...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345566677788899999999998754 3553 4457888888888899999988877 33466677777778999
Q ss_pred hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 574 NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 574 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.++++.|+.+.+++.+..|.+...|..|+.+|.+.|++++|+-.+..+.-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999999999999999999999999999999999988863
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.31 E-value=0.00011 Score=77.96 Aligned_cols=137 Identities=9% Similarity=0.079 Sum_probs=99.6
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHH
Q 005802 457 DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYAC 534 (676)
Q Consensus 457 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 534 (676)
++..+..|.....+.|++++|..+++...+ +.|+ ......+...+.+.+++++|...+++... ..|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 455666777777788888888888888877 5666 34555666777888888888888887763 3555 666777
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccH
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARY 598 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 598 (676)
+..++.+.|++++|..+|+++. .+.++..+..+..++...|+.++|...|+++++...+....|
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 7778888888888888888877 233466777777788888888888888888887755444443
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.00014 Score=70.28 Aligned_cols=145 Identities=12% Similarity=0.032 Sum_probs=116.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMID 537 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 537 (676)
.+.-....+...|++++|+..++.++.. .|+ ..........+...++..+|.+.++.+.. ..|+ ....-.+..
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 3334444556779999999999998875 455 44455556788999999999999999984 4677 566667899
Q ss_pred HHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHH
Q 005802 538 LYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMG 615 (676)
Q Consensus 538 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 615 (676)
+|.+.|++.+|+.++++.. .+.|+..|..|..+|...|+..++... .+..|.-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 9999999999999999887 666899999999999999998776655 355677889999999
Q ss_pred HHHHHHHhCCC
Q 005802 616 RIRKQMRGMKG 626 (676)
Q Consensus 616 ~~~~~~~~~~~ 626 (676)
..+...+++.-
T Consensus 446 ~~l~~A~~~~~ 456 (484)
T COG4783 446 IFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHhcc
Confidence 99999887653
No 132
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=5.4e-05 Score=74.27 Aligned_cols=217 Identities=12% Similarity=0.052 Sum_probs=134.9
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC------------CcchHH
Q 005802 395 LVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIER------------DLVLYN 462 (676)
Q Consensus 395 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~ 462 (676)
|..|-......++-..|...+.+..+.. +.+......|.-.|...|.-..|...+++-+.. +...-+
T Consensus 322 W~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~ 400 (579)
T KOG1125|consen 322 WQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFEN 400 (579)
T ss_pred HHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccC
Confidence 3333333333333344444444444433 334444555555555566555666555544210 000000
Q ss_pred HHHHHHHHcCChhHHHHHHHHHH-HCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHh
Q 005802 463 VMIACYAHHGHEEKAILLFEEML-EKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYG 540 (676)
Q Consensus 463 ~l~~~~~~~~~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 540 (676)
. ..+..........++|-++. ..+..+|......|.-.|.-.|++++|...|+..+ .++|+ ...|+.|.-.++
T Consensus 401 ~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL---~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 401 T--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL---QVKPNDYLLWNRLGATLA 475 (579)
T ss_pred C--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH---hcCCchHHHHHHhhHHhc
Confidence 0 11111122334444554444 45544667777777777888899999999999887 45777 788999999999
Q ss_pred hcCCHHHHHHHHHhCC-CCCcH-HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC----------CccHHHHHHHHHhc
Q 005802 541 RANQLEKAIEFMKSIP-TEEDA-VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN----------KARYVQLANVYAAE 608 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----------~~~~~~l~~~~~~~ 608 (676)
...+.++|+..|.++. ..|.. .++-.+.-+|...|.|++|...|-.++.+.+.+ ..+|..|=.++.-.
T Consensus 476 N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 476 NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAM 555 (579)
T ss_pred CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHc
Confidence 9999999999999988 56654 477788889999999999999999998885441 13566666666666
Q ss_pred CChhHHHHH
Q 005802 609 GNWAEMGRI 617 (676)
Q Consensus 609 g~~~~A~~~ 617 (676)
++.|-+.+.
T Consensus 556 ~~~D~l~~a 564 (579)
T KOG1125|consen 556 NRSDLLQEA 564 (579)
T ss_pred CCchHHHHh
Confidence 666644443
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.24 E-value=0.01 Score=61.98 Aligned_cols=160 Identities=11% Similarity=0.043 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHcCChh---HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEE---KAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMI 536 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 536 (676)
+-+.|++.+-+.++.. +|+-+++.-.... +.|..+=..+|..|+-.|-+..|.++|+.+--+ .+.-|...|. +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HH
Confidence 4567788888888755 4555555554431 234455566788999999999999999999766 6666644443 34
Q ss_pred HHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC----CccHHHHHHHHHhcCC
Q 005802 537 DLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN----KARYVQLANVYAAEGN 610 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~ 610 (676)
..+...|++..+...+.... ...+..-..-++....+.|.+.+-.+...--..+.... ...-......+...++
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 55566778877777766654 11111122223334456677776666554333332211 1223455566777888
Q ss_pred hhHHHHHHHHHH
Q 005802 611 WAEMGRIRKQMR 622 (676)
Q Consensus 611 ~~~A~~~~~~~~ 622 (676)
.++-...++.|+
T Consensus 595 ~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 595 GTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHhccc
Confidence 888888888876
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=0.00017 Score=77.11 Aligned_cols=148 Identities=12% Similarity=0.159 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc
Q 005802 429 LISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRH 505 (676)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 505 (676)
.+..+..+|-+.|+.++|...|+++.+ .|+.+.|.+.-.|... +.++|.+++.+.+.. +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 444555555566666666666655542 2444555555555555 555555555554432 333
Q ss_pred cCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHH
Q 005802 506 CGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAE 584 (676)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 584 (676)
.+++..+.++|..+.. ..|+ ...+..+.......-. ...-..++.-+...|...+++++++.++
T Consensus 182 ~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~~~------------~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGHRE------------FTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhhhc------------cchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 4455555555555542 1222 2222222222211111 1122334444556777888899999999
Q ss_pred HHHHcccCCCCccHHHHHHHHHh
Q 005802 585 EKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 585 ~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
+.+++.+|.|.....-++..|..
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHHH
Confidence 99999999988888888888763
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.23 E-value=3.4e-05 Score=65.10 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=66.2
Q ss_pred cCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcH----HHHHHHHHHHHHhCCHhH
Q 005802 506 CGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDA----VILGSFLNVCRLNRNAEL 579 (676)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~ 579 (676)
.++...+...++.+...++-.|- ....-.+...+...|++++|...|+.+. ..|++ .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 56666666666666554322211 2233334555666677777776666665 22332 233445556667777777
Q ss_pred HHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 580 AGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 580 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
|+..++.. ...+-.+..+..++++|.+.|++++|+..|+..
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77776552 223334556667777777777777777777653
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.0002 Score=63.29 Aligned_cols=244 Identities=13% Similarity=0.098 Sum_probs=159.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 005802 363 FSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGN 442 (676)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 442 (676)
++-+.-.|++..++..-... . +.+.+...-..+.++|...|...... ..+.... .|....+..+......-++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~-~--~~~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKF-S--SSKTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhh-c--cccchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcch
Confidence 34455668888877766654 2 22244445555566666666654322 2222222 3333333334443333444
Q ss_pred HHHHH-HHHhhcCCC----CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHH
Q 005802 443 MTYAE-IIFQNFIER----DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFN 517 (676)
Q Consensus 443 ~~~A~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 517 (676)
.++-. ++.+.+..+ +......-...|+..|++++|++..+... +......=+..+.+..+.+-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 333333332 22222333456889999999999887621 22223333445667788999999999
Q ss_pred HchhhcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHccc
Q 005802 518 SMTADYKISPETDHYACMIDLYGR----ANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLE 591 (676)
Q Consensus 518 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 591 (676)
.|.+- -+..+.+.|..++.+ .+...+|.-+|+++. .+|.+.+.+....++...|++++|+.+++.++..+
T Consensus 162 ~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 99642 346677777776654 457899999999998 57888899999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhcCChhHHH-HHHHHHHh
Q 005802 592 GNNKARYVQLANVYAAEGNWAEMG-RIRKQMRG 623 (676)
Q Consensus 592 p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 623 (676)
+.+|.+...++-+-...|+-.++. +.+..++.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999999998888888888876654 45555554
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.18 E-value=0.014 Score=61.09 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=89.3
Q ss_pred HHHHHHHHHhhcChhH---HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCcchHHHHHHH
Q 005802 395 LVILLGACALQAALHP---GKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI----ERDLVLYNVMIAC 467 (676)
Q Consensus 395 ~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~ 467 (676)
.+.++..+-+.++... |.-+++...... +.|..+-..+|..|+-.|-+..|.++|..+. +.|...|. +...
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 3455666777776553 333444433332 4555666678888988899999999998775 23433332 3344
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHH---HHchhhcCCCCCHHHHHHHHHHHhhcC
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYF---NSMTADYKISPETDHYACMIDLYGRAN 543 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~---~~~~~~~~~~p~~~~~~~l~~~~~~~g 543 (676)
+...|++..+...++....- +..+ ..+-..+..+| +.|.+++..++. +++... ...--..+-+..++.+...+
T Consensus 517 ~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCC
Confidence 55667777777777665431 0111 12222333344 345555544433 222211 00111334456677788888
Q ss_pred CHHHHHHHHHhCCCCC
Q 005802 544 QLEKAIEFMKSIPTEE 559 (676)
Q Consensus 544 ~~~~A~~~~~~~~~~~ 559 (676)
+.++-...+..|..+|
T Consensus 594 ~~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 594 RGTQLLKLLESMKLPP 609 (932)
T ss_pred cHHHHHHHHhccccCc
Confidence 8888888888777333
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=9.7e-05 Score=64.73 Aligned_cols=186 Identities=14% Similarity=0.174 Sum_probs=147.9
Q ss_pred hcCCHHHHHHHHhhcCC--------CCc-chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH-HHHhhccCc
Q 005802 439 KCGNMTYAEIIFQNFIE--------RDL-VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAI-LSAFRHCGS 508 (676)
Q Consensus 439 ~~g~~~~A~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~ 508 (676)
...+.++..+++..+.. ++. ..|..++-+....|+.+.|...++++.++ + |...-...+ ..-+...|.
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhc
Confidence 34578888888887751 222 24556666777889999999999999886 3 543322222 223566799
Q ss_pred HHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHH
Q 005802 509 VEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEE 585 (676)
Q Consensus 509 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 585 (676)
+++|.++++.+.++ .|+ ..++..-+-..-..|+.-+|++-+.+.. +..|...|..+...|...|++++|.-.++
T Consensus 102 ~~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 102 YKEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 99999999999875 354 7777777777788898889998888777 67899999999999999999999999999
Q ss_pred HHHcccCCCCccHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCccc
Q 005802 586 KLLRLEGNNKARYVQLANVYAAEG---NWAEMGRIRKQMRGMKGNRF 629 (676)
Q Consensus 586 ~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~ 629 (676)
+++-..|.++-.+..|+.++.-.| +..-|++++.+..+...+..
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 999999999999999999987766 67788999999988776443
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=3.9e-05 Score=64.08 Aligned_cols=114 Identities=13% Similarity=0.089 Sum_probs=88.4
Q ss_pred HHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--
Q 005802 480 LFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-- 556 (676)
Q Consensus 480 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 556 (676)
.+++... ..|+ ......+...+...|++++|.+.++.+... .+.+...+..+...+.+.|++++|...++...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455554 3443 344556667788889999999999988653 12347888888999999999999999988875
Q ss_pred CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 557 TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 557 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
.+.++..+..+..++...|++++|...++++.+..|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 45567788888889999999999999999999999987653
No 140
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.14 E-value=2.2e-05 Score=60.99 Aligned_cols=94 Identities=19% Similarity=0.198 Sum_probs=77.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG 609 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 609 (676)
+..+...+...|++++|...++++. .+.+...+..+...+...+++++|...++++.+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4556777788888999988888776 33345677777788888899999999999999998888888999999999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 005802 610 NWAEMGRIRKQMRGMK 625 (676)
Q Consensus 610 ~~~~A~~~~~~~~~~~ 625 (676)
++++|...++...+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998876543
No 141
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.13 E-value=0.00025 Score=75.95 Aligned_cols=142 Identities=13% Similarity=0.136 Sum_probs=89.5
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 005802 470 HHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKA 548 (676)
Q Consensus 470 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 548 (676)
...++.-...+...|.+. .-+...+..+..+|.+.|+.++|..+|+++.+- .|+ +...+.+...|... ++++|
T Consensus 95 ~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 95 QNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKA---DRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHh-hHHHH
Confidence 333443333344444442 223345666667777777777777777777632 344 67777777777777 77777
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHH--------------------HHHHHHHhc
Q 005802 549 IEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYV--------------------QLANVYAAE 608 (676)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~--------------------~l~~~~~~~ 608 (676)
++++.++. ..+...+++..+..+++++.+.+|++...+. -|-..|...
T Consensus 169 ~~m~~KAV------------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 169 ITYLKKAI------------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred HHHHHHHH------------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 77776653 2355556677777777777777666644432 233556667
Q ss_pred CChhHHHHHHHHHHhCCCccc
Q 005802 609 GNWAEMGRIRKQMRGMKGNRF 629 (676)
Q Consensus 609 g~~~~A~~~~~~~~~~~~~~~ 629 (676)
++|+++..+++.+.+...+..
T Consensus 237 ~~~~~~i~iLK~iL~~~~~n~ 257 (906)
T PRK14720 237 EDWDEVIYILKKILEHDNKNN 257 (906)
T ss_pred hhhhHHHHHHHHHHhcCCcch
Confidence 899999999999998766543
No 142
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=1.4e-05 Score=71.90 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=73.9
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhH
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAEL 579 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 579 (676)
..+.+++.+|+..|.+.+ .+.|+ ...|..-..+|.+.|.++.|++-.+... ..| ...+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 557788888888888887 55666 6666677888888888888888888777 344 44578888888888888888
Q ss_pred HHHHHHHHHcccCCCCccHHHH
Q 005802 580 AGEAEEKLLRLEGNNKARYVQL 601 (676)
Q Consensus 580 a~~~~~~~~~~~p~~~~~~~~l 601 (676)
|++.|+++++++|++......|
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHH
Confidence 8888888888888887544444
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=4.7e-06 Score=50.26 Aligned_cols=35 Identities=43% Similarity=0.665 Sum_probs=30.9
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH
Q 005802 225 VSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNE 259 (676)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 259 (676)
.+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998873
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.12 E-value=4e-05 Score=75.26 Aligned_cols=101 Identities=11% Similarity=0.005 Sum_probs=68.1
Q ss_pred HHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCH
Q 005802 501 SAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNA 577 (676)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 577 (676)
..+...|++++|...|+++.. ..|+ ...|..+..+|.+.|++++|+..++++. .+.+...+..++.+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 445566777777777777764 2444 6666677777777777777777777766 334556666677777777777
Q ss_pred hHHHHHHHHHHcccCCCCccHHHHHHH
Q 005802 578 ELAGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 578 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
+.|+..++++++++|+++.....+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777777777777777776655555444
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.11 E-value=2.3e-06 Score=64.29 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=54.3
Q ss_pred cCCHHHHHHHHHhCC-CCC---cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHH
Q 005802 542 ANQLEKAIEFMKSIP-TEE---DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRI 617 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 617 (676)
.|++++|+.+++++. ..| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 466777777777666 222 445556677777888888888888877 666666666777778888888888888888
Q ss_pred HHH
Q 005802 618 RKQ 620 (676)
Q Consensus 618 ~~~ 620 (676)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=0.0001 Score=72.02 Aligned_cols=124 Identities=19% Similarity=0.234 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCc
Q 005802 429 LISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGS 508 (676)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 508 (676)
....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..+.. +-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 344556666677888889999998887777777778888888888889999998888642 2345555555666888899
Q ss_pred HHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 509 VEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 509 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
++.|..+.+++. ...|+ ..+|..|+.+|.+.|+++.|+-.++.++
T Consensus 250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999887 55677 7789999999999999999999998887
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.07 E-value=4.6e-05 Score=62.04 Aligned_cols=96 Identities=10% Similarity=-0.051 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC---CccHHHHH
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP-TEED----AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN---KARYVQLA 602 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 602 (676)
++..++..+.+.|++++|.+.++.+. ..|+ ...+..+..++...|+++.|...++++....|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34455556666666666666666654 2222 2344556666677777777777777777666654 34566677
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC
Q 005802 603 NVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.++.+.|++++|.+.++.+.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 777777777777777777766544
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.07 E-value=7.5e-06 Score=58.79 Aligned_cols=65 Identities=22% Similarity=0.154 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 005802 560 DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG-NWAEMGRIRKQMRGM 624 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 624 (676)
++..|..++..+...|++++|+..|+++++.+|+++..+..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788889999999999999999999999999999999999999999999 799999999988754
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.05 E-value=0.00025 Score=59.84 Aligned_cols=124 Identities=15% Similarity=0.160 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC--HHHHHHH
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEKGIKPD---AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE--TDHYACM 535 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l 535 (676)
|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+... ...|+ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 33444444 4677777777788887753 112 122333445677788888888888888765 32232 2234456
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 005802 536 IDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKL 587 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 587 (676)
...+...|++++|+..++... ....+..+...+.++...|++++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777888888888888887765 2234556666777888888888888888775
No 150
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=9.4e-06 Score=48.91 Aligned_cols=35 Identities=49% Similarity=0.815 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 005802 459 VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA 493 (676)
Q Consensus 459 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 493 (676)
.+|++++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888999999999999999999999998888873
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.04 E-value=7.3e-06 Score=48.96 Aligned_cols=33 Identities=33% Similarity=0.606 Sum_probs=26.9
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 005802 225 VSWNTLISGYVQNGDAEEGLKLFVRMGENGVRW 257 (676)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 257 (676)
.+|+.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 152
>PRK15331 chaperone protein SicA; Provisional
Probab=98.03 E-value=0.00016 Score=59.74 Aligned_cols=100 Identities=12% Similarity=0.052 Sum_probs=84.6
Q ss_pred CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHH
Q 005802 524 KISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQ 600 (676)
Q Consensus 524 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 600 (676)
|++++ ....-....-+...|++++|..+|+-+. ..-++..|..|..+|...+++++|+..|..+..+.++||..+.+
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 55544 3333345556678999999999998766 45577788889999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 005802 601 LANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.+.+|...|+.+.|+..|+...+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998875
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.01 E-value=1.1e-05 Score=57.11 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=52.3
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
+...+...|++++|+..++++++..|.++..+..++.++...|++++|...++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456788899999999999999999999999999999999999999999999998876554
No 154
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=1.5e-05 Score=47.56 Aligned_cols=33 Identities=39% Similarity=0.738 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 005802 459 VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP 491 (676)
Q Consensus 459 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 491 (676)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 155
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=4.5e-05 Score=69.31 Aligned_cols=106 Identities=13% Similarity=0.103 Sum_probs=91.7
Q ss_pred CCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHh---CCHhHHHHHHHHHHcccCCCCccHH
Q 005802 526 SPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLN---RNAELAGEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 526 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~ 599 (676)
.|+ ...|..|...|...|+...|..-|.+.. .++++..+..+..++..+ .+..++..+++++++.+|.|.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 354 8999999999999999999999999887 667888888888865443 2567999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcccCc
Q 005802 600 QLANVYAAEGNWAEMGRIRKQMRGMKGNRFAG 631 (676)
Q Consensus 600 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 631 (676)
.|+..+...|++.+|...|+.|.+..+..+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999999887755444
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.90 E-value=0.00018 Score=58.52 Aligned_cols=103 Identities=10% Similarity=0.024 Sum_probs=64.8
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCc----HHHHHHHH
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEED----AVILGSFL 568 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 568 (676)
++..+...+.+.|++++|...|+.+...+.-.|. ...+..+..++.+.|++++|.+.++++. ..|+ +..+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555566667777777777776544211111 3345556777777777777777777665 2222 34566666
Q ss_pred HHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 569 NVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
.++...|+.++|...++++++..|+++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 77777888888888888888877776543
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=9.5e-05 Score=66.79 Aligned_cols=99 Identities=23% Similarity=0.250 Sum_probs=81.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcC
Q 005802 466 ACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRAN 543 (676)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 543 (676)
.-+.+.+++.+|+..|.+.++ +.|+ .+-|..=..+|++.|.++.|++-.+..+ .+.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 446788999999999999998 5665 5556666778999999999999998887 56777 889999999999999
Q ss_pred CHHHHHHHHHhCC-CCCcHHHHHHHHH
Q 005802 544 QLEKAIEFMKSIP-TEEDAVILGSFLN 569 (676)
Q Consensus 544 ~~~~A~~~~~~~~-~~~~~~~~~~l~~ 569 (676)
++++|++.|++.. ..|+..+|..=+.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 9999999999988 6776665544433
No 158
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.84 E-value=3.9e-05 Score=54.83 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=45.1
Q ss_pred HHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 572 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
...|++++|+..++++.+.+|+++..+..|+.+|.+.|++++|.++++.+....+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678888999999999888898888888899999999999999988887765433
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.81 E-value=0.00022 Score=70.09 Aligned_cols=102 Identities=9% Similarity=0.022 Sum_probs=81.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhc
Q 005802 464 MIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRA 542 (676)
Q Consensus 464 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 542 (676)
....+...|++++|++.|++.++.. +-+...|..+..+|...|++++|+..++++.. +.|+ ...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3556778899999999999999853 23466777888899999999999999999974 4565 77888999999999
Q ss_pred CCHHHHHHHHHhCC-CCCcHHHHHHHHH
Q 005802 543 NQLEKAIEFMKSIP-TEEDAVILGSFLN 569 (676)
Q Consensus 543 g~~~~A~~~~~~~~-~~~~~~~~~~l~~ 569 (676)
|++++|+..|+++. ..|+...+...+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999987 5555444444443
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.80 E-value=0.00021 Score=62.35 Aligned_cols=98 Identities=18% Similarity=0.110 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP-TEED----AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLAN 603 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 603 (676)
...+..+...+...|++++|...+++.. ..|+ ...+..+..++...|++++|...++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4455666666777777777777777665 2221 3466777778888888888888888888888888888888888
Q ss_pred HHHhcCC--------------hhHHHHHHHHHHhCCC
Q 005802 604 VYAAEGN--------------WAEMGRIRKQMRGMKG 626 (676)
Q Consensus 604 ~~~~~g~--------------~~~A~~~~~~~~~~~~ 626 (676)
+|...|+ +++|.+++++..+.++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 8887776 4666666666665443
No 161
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.72 E-value=0.061 Score=53.19 Aligned_cols=208 Identities=11% Similarity=0.047 Sum_probs=141.8
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhcC----CCCcchHHHHHHHHHHcCChhHHHHHH
Q 005802 409 HPGKEIHAYILRMGVQMDKKLISTLVDMYSKCG---NMTYAEIIFQNFI----ERDLVLYNVMIACYAHHGHEEKAILLF 481 (676)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~ 481 (676)
+++..+++.....-...+..+|..+.+.--..- ..+.....++++. ..-..+|..+++.-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 344455555544333334444444433221111 2444444555443 223457888888888888899999999
Q ss_pred HHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC---
Q 005802 482 EEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPT--- 557 (676)
Q Consensus 482 ~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 557 (676)
.+..+.+..+ +....++++..+|. ++.+-|.++|+.=..++|-. +.--...++.+...++-..|..+|++...
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999988888 66777888886665 78999999999877765433 44455778888999999999999999872
Q ss_pred CC--cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC----ccHHHHHHHHHhcCChhHHHHHHH
Q 005802 558 EE--DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK----ARYVQLANVYAAEGNWAEMGRIRK 619 (676)
Q Consensus 558 ~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~ 619 (676)
+| ....|..++.--..-|+...+..+-++.....|.+. ..-..+++-|.-.+.+.--..-++
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 33 346899999999999999999999999988877331 233455566666666554444333
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.70 E-value=0.00032 Score=61.01 Aligned_cols=93 Identities=13% Similarity=-0.093 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLAN 603 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 603 (676)
...|..++..+...|++++|+..+++.. ..| ...++..+..++...|++++|+..++++.+..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 5667777888888899999999888875 222 23478888889999999999999999999999998888888888
Q ss_pred HHH-------hcCChhHHHHHHHHH
Q 005802 604 VYA-------AEGNWAEMGRIRKQM 621 (676)
Q Consensus 604 ~~~-------~~g~~~~A~~~~~~~ 621 (676)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788887665555443
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.70 E-value=8e-05 Score=52.57 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=47.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
+...+.+.|++++|.+.|+++. .+.++..+..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566778888888888888877 334667888888888889999999999999988888764
No 164
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.69 E-value=0.00011 Score=53.40 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=52.7
Q ss_pred HHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 569 NVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
..|...++++.|..+++++++.+|+++..+..++.+|...|++++|.+.++...+..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 5678899999999999999999999999999999999999999999999999887655
No 165
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=5.4e-05 Score=43.94 Aligned_cols=31 Identities=48% Similarity=0.854 Sum_probs=23.9
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 225 VSWNTLISGYVQNGDAEEGLKLFVRMGENGV 255 (676)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 255 (676)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877664
No 166
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.66 E-value=0.064 Score=51.90 Aligned_cols=124 Identities=17% Similarity=0.218 Sum_probs=78.4
Q ss_pred hcCC-HHHHHHHHhhcCC---CCcchHHHHH----HHHHH---cCChhHHHHHHHHHHHCCCCCCHh----HHHHHHHH-
Q 005802 439 KCGN-MTYAEIIFQNFIE---RDLVLYNVMI----ACYAH---HGHEEKAILLFEEMLEKGIKPDAV----TFVAILSA- 502 (676)
Q Consensus 439 ~~g~-~~~A~~~~~~~~~---~~~~~~~~l~----~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~- 502 (676)
+.|. -++|.++++.+.+ .|..+-|... ..|.+ ...+.+-+.+-+-+.+.|+.|-.. .-+.|..|
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 3444 6777777776652 2433333322 12221 223444444445555678877533 33334333
Q ss_pred -hhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHH
Q 005802 503 -FRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSF 567 (676)
Q Consensus 503 -~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 567 (676)
+...|++.++.-+-.-+. .+.|++.+|..+.-++....++++|..++.+.+ |+...+++-
T Consensus 471 yLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 456799999887776665 678999999999999999999999999999985 566555543
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.64 E-value=0.00054 Score=52.85 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=46.4
Q ss_pred HHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhC
Q 005802 499 ILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNR 575 (676)
Q Consensus 499 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 575 (676)
+...+...|++++|...++...+. .|+ ...+..+...+...|++++|.+.+++.. .+.+...+..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 333444455555555555554421 222 2444445555555555555555555543 2223345555555566666
Q ss_pred CHhHHHHHHHHHHcccC
Q 005802 576 NAELAGEAEEKLLRLEG 592 (676)
Q Consensus 576 ~~~~a~~~~~~~~~~~p 592 (676)
+++.|...++++.+..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666666655544
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.64 E-value=0.00017 Score=54.06 Aligned_cols=80 Identities=20% Similarity=0.333 Sum_probs=40.1
Q ss_pred cCChhHHHHHHHHHHHCCCC-CCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 005802 471 HGHEEKAILLFEEMLEKGIK-PDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKA 548 (676)
Q Consensus 471 ~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 548 (676)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++.. ...|+ ......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35566666666666653221 12333334555666666666666666551 22222 23333445556666666666
Q ss_pred HHHHHh
Q 005802 549 IEFMKS 554 (676)
Q Consensus 549 ~~~~~~ 554 (676)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
No 169
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.62 E-value=8e-05 Score=43.20 Aligned_cols=31 Identities=45% Similarity=0.768 Sum_probs=23.2
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 005802 459 VLYNVMIACYAHHGHEEKAILLFEEMLEKGI 489 (676)
Q Consensus 459 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 489 (676)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777663
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.62 E-value=7e-05 Score=53.52 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=27.6
Q ss_pred hcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHH
Q 005802 541 RANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 599 (676)
+.|++++|+++|+++. .+.+...+..+..+|...|++++|..+++++....|+++..+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 3444455555544444 2334444444555555555555555555555555555433333
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.60 E-value=0.0016 Score=66.97 Aligned_cols=67 Identities=18% Similarity=0.129 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 560 DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
++..+..+.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.+++.....+.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 445555555555566777777777777777777 4667777777777777777777777777665553
No 172
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.60 E-value=0.0016 Score=61.62 Aligned_cols=134 Identities=12% Similarity=0.146 Sum_probs=100.2
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH-hhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 005802 459 VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSA-FRHCGSVEMGEKYFNSMTADYKISPETDHYACMID 537 (676)
Q Consensus 459 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 537 (676)
.+|..++...-+.+..+.|.++|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 367888888888888999999999998543 2234444444433 333577788999999998754 445778889999
Q ss_pred HHhhcCCHHHHHHHHHhCC--CCCc---HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 538 LYGRANQLEKAIEFMKSIP--TEED---AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 538 ~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
.+.+.|+.+.|..+|++.. .+++ ...|..++..-...|+.+....+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999988 2222 35899999999999999999999999999988743
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.58 E-value=0.0015 Score=56.94 Aligned_cols=130 Identities=15% Similarity=0.221 Sum_probs=85.9
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHH
Q 005802 457 DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD--AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYA 533 (676)
Q Consensus 457 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 533 (676)
....+..+...+...|++++|...|++..+.+..+. ...+..+...+...|++++|...+++... ..|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344566777777888888888888888876433322 34666777778888888888888887764 3444 55666
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCC
Q 005802 534 CMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 534 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 610 (676)
.+..++...|+...+..-++... ..+++|.+.++++.+.+|++ +..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 66777777776665554333221 13678888899988888876 5455555544443
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.58 E-value=0.0026 Score=65.42 Aligned_cols=140 Identities=14% Similarity=0.030 Sum_probs=95.6
Q ss_pred CCcchHHHHHHHHHH--c---CChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHhhcc--------CcHHHHHHHHHHchh
Q 005802 456 RDLVLYNVMIACYAH--H---GHEEKAILLFEEMLEKGIKPDA-VTFVAILSAFRHC--------GSVEMGEKYFNSMTA 521 (676)
Q Consensus 456 ~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------g~~~~a~~~~~~~~~ 521 (676)
.+...|...+.+... . +....|..+|++.++ ..|+- ..+..+..++... ++...+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 355566666655433 2 236688888888887 45663 3333333322111 223444555554332
Q ss_pred hcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 522 DYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 522 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
......+...|..+.-.+...|++++|...++++. ..|+...|..++..+...|+.++|.+.++++..++|.++..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 21123346778888777778899999999999988 67788889999999999999999999999999999998853
No 175
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.55 E-value=0.0012 Score=50.36 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCcHhHHHHHHHHHhCCC--------ChHHHHHHHHHHHHhCCCCchhHHH
Q 005802 228 NTLISGYVQNGDAEEGLKLFVRMGENGV-RWNEHTFASALSACCGLR--------NVKCAKEIHSWVLKNGLISNPFVSS 298 (676)
Q Consensus 228 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 298 (676)
...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. .....+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 999999999999887543 2456788999999999999999999
Q ss_pred HHHHHHHhc
Q 005802 299 GIVDVYCKC 307 (676)
Q Consensus 299 ~l~~~~~~~ 307 (676)
.++..+.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999887653
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.51 E-value=0.022 Score=54.26 Aligned_cols=128 Identities=18% Similarity=0.238 Sum_probs=71.0
Q ss_pred HHHHHhc-CCHHHHHHHHhhcCC-----CC----cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-----Hh-HHH
Q 005802 434 VDMYSKC-GNMTYAEIIFQNFIE-----RD----LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-----AV-TFV 497 (676)
Q Consensus 434 ~~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~-~~~ 497 (676)
...|... |+++.|.+.|++... .. ..++..+...+.+.|++++|.++|++....-...+ .. .|.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 3344444 566666665554431 11 22455677788888999999999988876433222 11 223
Q ss_pred HHHHHhhccCcHHHHHHHHHHchhhc-CCCCC--HHHHHHHHHHHhhc--CCHHHHHHHHHhCCCCCcHH
Q 005802 498 AILSAFRHCGSVEMGEKYFNSMTADY-KISPE--TDHYACMIDLYGRA--NQLEKAIEFMKSIPTEEDAV 562 (676)
Q Consensus 498 ~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~ 562 (676)
..+-++...||+..|...++...... ++..+ -.....|+.++-.. ..+++|+.-|+.+. +.|+.
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w 269 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNW 269 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS----HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHH
Confidence 33345666788889988888876331 22222 34455666766543 46777777777775 33433
No 177
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.50 E-value=0.00029 Score=50.45 Aligned_cols=65 Identities=20% Similarity=0.162 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhC-CHhHHHHHHHHHHcccC
Q 005802 528 ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNR-NAELAGEAEEKLLRLEG 592 (676)
Q Consensus 528 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 592 (676)
+...|..+...+...|++++|+..|++.. .+.++..|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35677788888888888888888888877 5557778888888888888 78999999999888877
No 178
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.17 Score=52.37 Aligned_cols=336 Identities=12% Similarity=0.110 Sum_probs=191.0
Q ss_pred hCCCCCcHhHHHH-----HHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hHHHHHHHHhcCC-
Q 005802 252 ENGVRWNEHTFAS-----ALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCEN---MNYAESMLLLKGV- 322 (676)
Q Consensus 252 ~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~- 322 (676)
..|++.+..-|.. +++-+...+.+..|.++-..+...-... ..++.....-+.+..+ .+.+..+-.++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3466665555443 4555666777777777766654322222 4566666666666532 2233333344444
Q ss_pred -CCchhHHHHHHHHHhcCCHHHHHHHHhccCCC--------CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHh
Q 005802 323 -RNSFSISSMIVGYSLQGNMEEARRHFDSLTEK--------NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDAL 393 (676)
Q Consensus 323 -~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 393 (676)
.+..+|..........|+.+-|..+++.=+.. +..-+...+.-+...|+.+-...++-++ ..+ .+..
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhl-k~~---~~~s 579 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHL-KNK---LNRS 579 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHH-HHH---HHHH
Confidence 45667888888888888888888887754431 2223455566666777777777766665 221 0111
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH-HHhhc-----CCCCcchHHHHHHH
Q 005802 394 ILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEI-IFQNF-----IERDLVLYNVMIAC 467 (676)
Q Consensus 394 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~-----~~~~~~~~~~l~~~ 467 (676)
.|.. ...+...|..+|....+.. +. ..+-+.|-...+...+-. .++.. ..+-..........
T Consensus 580 ~l~~------~l~~~p~a~~lY~~~~r~~---~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 580 SLFM------TLRNQPLALSLYRQFMRHQ---DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HHHH------HHHhchhhhHHHHHHHHhh---ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 1111 1112223333443333211 00 011122222222222111 11110 01111122223333
Q ss_pred HHHcCChh----------HHHHHHHHHHH-CCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 005802 468 YAHHGHEE----------KAILLFEEMLE-KGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMI 536 (676)
Q Consensus 468 ~~~~~~~~----------~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 536 (676)
+.+..... .-+++.+.+.. .|......+.+--+.-+...|+..+|.++-++.+ -||...|..-+
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~ 722 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKL 722 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHH
Confidence 44333211 11222222222 2333444556666667778899999999888774 48999999999
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHH
Q 005802 537 DLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGR 616 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 616 (676)
.+++..+++++-+++-++.. .|.-|.-++.+|.+.|+.++|..++-+.... .-.+.+|.+.|++.+|.+
T Consensus 723 ~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 723 TALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAAD 791 (829)
T ss_pred HHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHH
Confidence 99999999999999988875 3677778889999999999999987665322 257889999999999988
Q ss_pred HHHH
Q 005802 617 IRKQ 620 (676)
Q Consensus 617 ~~~~ 620 (676)
.--+
T Consensus 792 ~A~~ 795 (829)
T KOG2280|consen 792 LAAE 795 (829)
T ss_pred HHHH
Confidence 7543
No 179
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.49 E-value=0.1 Score=50.03 Aligned_cols=102 Identities=14% Similarity=0.210 Sum_probs=50.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHH
Q 005802 434 VDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGE 513 (676)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 513 (676)
+.-+...|+...|.++-.+..-|+-.-|-..+.+++..++|++-.++... +-++.-|..++.+|.+.|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 44444455555555555555555555555555555555555544443211 112244555555555555555555
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 005802 514 KYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFM 552 (676)
Q Consensus 514 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 552 (676)
.++.++. + ..-+..|.++|++.+|.+.-
T Consensus 258 ~yI~k~~-------~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 258 KYIPKIP-------D----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHhCC-------h----HHHHHHHHHCCCHHHHHHHH
Confidence 5555431 1 22344555555555555443
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.46 E-value=0.0019 Score=56.16 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=50.3
Q ss_pred HHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHH-
Q 005802 497 VAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCR- 572 (676)
Q Consensus 497 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~- 572 (676)
..+...+...|++++|...|+.......-.++ ..++..+..++...|++++|++.+++.. .+.....+..+...+.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHY 118 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 33344444445555555555544322100011 2344445555555555555555555544 1222333333333333
Q ss_pred ------HhCCHh-------HHHHHHHHHHcccCCCCccHHHHHHHHHhcCCh
Q 005802 573 ------LNRNAE-------LAGEAEEKLLRLEGNNKARYVQLANVYAAEGNW 611 (676)
Q Consensus 573 ------~~~~~~-------~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 611 (676)
..|+++ +|..+++++...+|++ +......+...|++
T Consensus 119 ~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (168)
T CHL00033 119 RGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN---YIEAQNWLKITGRF 167 (168)
T ss_pred hhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc---HHHHHHHHHHhcCC
Confidence 445544 5556666666666653 23333444444443
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.41 E-value=0.0012 Score=61.17 Aligned_cols=85 Identities=8% Similarity=-0.013 Sum_probs=45.6
Q ss_pred hhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC---CccHHHHHHHHHhcCCh
Q 005802 540 GRANQLEKAIEFMKSIP-TEED----AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN---KARYVQLANVYAAEGNW 611 (676)
Q Consensus 540 ~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 611 (676)
.+.|++++|...|+... .-|+ +..+--++.+|...|+++.|...|+++++..|++ +..+..++.+|...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 44455555555555544 1222 1244445555666666666666666666655554 33344445566666666
Q ss_pred hHHHHHHHHHHhC
Q 005802 612 AEMGRIRKQMRGM 624 (676)
Q Consensus 612 ~~A~~~~~~~~~~ 624 (676)
++|.++++.+.+.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.39 E-value=0.024 Score=47.63 Aligned_cols=132 Identities=10% Similarity=0.014 Sum_probs=94.3
Q ss_pred CCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---cHHHH
Q 005802 489 IKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEE---DAVIL 564 (676)
Q Consensus 489 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~ 564 (676)
..|+...-..|..+....|+..+|...|++...- -+.-|....-.+..+....++...|...+++.- .+| .+...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4566666677777888888888888888877552 334456777777777888888888887777655 222 33445
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 565 GSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 565 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
..+...+...|.+.+|+..|+.++...|. +......+..+.++|+.++|..-+..+-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 55677888888888888888888888775 5556666778888888887776555443
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.39 E-value=0.0013 Score=52.24 Aligned_cols=87 Identities=17% Similarity=-0.048 Sum_probs=56.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CC---C-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC---CCccHHHHHHHHH
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP-TE---E-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN---NKARYVQLANVYA 606 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~-~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 606 (676)
+..++-..|+.++|+.++++.. .. + -...+..+..++...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 4555666677777777776655 11 1 1224455666777777777777777777777666 5555666677777
Q ss_pred hcCChhHHHHHHHHH
Q 005802 607 AEGNWAEMGRIRKQM 621 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~ 621 (676)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777766443
No 184
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0015 Score=62.10 Aligned_cols=82 Identities=16% Similarity=0.090 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEE
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIH 642 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (676)
++..+..++.+.+++..|+...++.++++|+|....+.-+.+|...|+++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~------------------ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL------------------ 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh------------------
Confidence 45566667778888888888888888888888888888888888888888888888877642
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 005802 643 IFTVGDVSHPKTNAIYSVLAIFTGELYE 670 (676)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (676)
+|.+..+..+|..+.+++++
T Consensus 321 --------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 --------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred --------CCCcHHHHHHHHHHHHHHHH
Confidence 67777777777777777654
No 185
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0079 Score=57.07 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=88.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH--HhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHH--------
Q 005802 466 ACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILS--AFRHCGSVEMGEKYFNSMTADYKISPETDHYACM-------- 535 (676)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-------- 535 (676)
.++.-.|++++|.+.-...++.. ++ ..+..+++ ++...++.+.|...|++.. .+.|+...-..+
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 44555677777776655554421 11 11222222 2344566677777776665 444552221111
Q ss_pred -----HHHHhhcCCHHHHHHHHHhCC-CCC-----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHH
Q 005802 536 -----IDLYGRANQLEKAIEFMKSIP-TEE-----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 536 -----~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
..-..+.|++.+|.+.+.+.+ ..| +...|.....+..+.|+..+|+.-.+.+.+++|.-...+..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 222456677777777777766 333 333444444455677777777777777777777766677777777
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 005802 605 YAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 605 ~~~~g~~~~A~~~~~~~~~ 623 (676)
+...++|++|.+.++...+
T Consensus 331 ~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777777777777766644
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.36 E-value=0.0026 Score=62.66 Aligned_cols=63 Identities=21% Similarity=0.333 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhh
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTAD 522 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 522 (676)
|..++++.|...|..+.++.++..=...|+-||..|++.|+..+.+.|++..|.++...|..+
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 344555555566666666665555555566666666666666666666666665555555443
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.35 E-value=0.0057 Score=51.19 Aligned_cols=107 Identities=13% Similarity=0.136 Sum_probs=94.1
Q ss_pred hhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC--CC
Q 005802 521 ADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP---TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN--NK 595 (676)
Q Consensus 521 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~ 595 (676)
+.....|+...-..|..++.+.|+..||...|++.. ...|+..+..+.++....++...|...++++.+.+|. +|
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 333567888888899999999999999999999987 5568889999999999999999999999999999876 67
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 596 ARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
.....++.+|...|++.+|...++-...-.++
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 78889999999999999999999988775543
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.34 E-value=0.0027 Score=48.43 Aligned_cols=79 Identities=11% Similarity=0.201 Sum_probs=64.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHhHHHHHHHHhhcc--------CcHHHHHHHHHHchhhcCCCCCHHHH
Q 005802 462 NVMIACYAHHGHEEKAILLFEEMLEKGI-KPDAVTFVAILSAFRHC--------GSVEMGEKYFNSMTADYKISPETDHY 532 (676)
Q Consensus 462 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~~~ 532 (676)
...|..+...+++.....+|+.++..|+ .|+..+|+.++.+..+. +++...+.+|+.|... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 4456666777999999999999999999 89999999999876653 2455678889999877 899999999
Q ss_pred HHHHHHHhh
Q 005802 533 ACMIDLYGR 541 (676)
Q Consensus 533 ~~l~~~~~~ 541 (676)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887764
No 189
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.34 E-value=0.00013 Score=42.97 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=30.8
Q ss_pred HHHHHcccCCCCccHHHHHHHHHhcCChhHHHH
Q 005802 584 EEKLLRLEGNNKARYVQLANVYAAEGNWAEMGR 616 (676)
Q Consensus 584 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 616 (676)
++++++++|+++..|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 190
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.24 Score=50.68 Aligned_cols=202 Identities=11% Similarity=0.056 Sum_probs=116.4
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHhccCCC-CCcchHHHHHHHH----------HhcCChHHHHHHhccCCCCCcccH
Q 005802 22 TLTTITTNQLIHIYSKHNLLRESRKLFDEMPE-RNVFSWNTIISAC----------IKSHDLKQARSLFDSSPHKDLVTY 90 (676)
Q Consensus 22 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~----------~~~g~~~~A~~~~~~~~~~~~~~~ 90 (676)
.|++..|..|...-.+.-.++.|...|-+... +.+.....|-..+ +--|++++|++++-.|.+.|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLA-- 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLA-- 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhh--
Confidence 47777888887776666677777777766543 2222222221111 1237788888877766655432
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCC----hhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHH
Q 005802 91 NSMLCGYINAEGYEADALKLFIEMQSADEHIRMD----EFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSL 166 (676)
Q Consensus 91 ~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (676)
+..+.+.|++. .+.+++.. .|-..| ...++.+-..++....++.|.+.+.... -....
T Consensus 767 ---ielr~klgDwf-rV~qL~r~-----g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~---------~~e~~ 828 (1189)
T KOG2041|consen 767 ---IELRKKLGDWF-RVYQLIRN-----GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG---------DTENQ 828 (1189)
T ss_pred ---HHHHHhhhhHH-HHHHHHHc-----cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------chHhH
Confidence 33333444444 44443322 111111 1245556666666666666666655422 22345
Q ss_pred HHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHH
Q 005802 167 IDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKL 246 (676)
Q Consensus 167 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 246 (676)
+.+|.+...+++-..+...+++ +....-.+.+++...|.-++|.+.+-+.. .| ...+..|...++|.+|.++
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe--~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~p-----kaAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE--DSELLPVMADMFTSVGMCDQAVEAYLRRS-LP-----KAAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc--ccchHHHHHHHHHhhchHHHHHHHHHhcc-Cc-----HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666544 45555667788888888888887776655 33 3455667777778888777
Q ss_pred HHHHH
Q 005802 247 FVRMG 251 (676)
Q Consensus 247 ~~~m~ 251 (676)
-+...
T Consensus 901 aq~~~ 905 (1189)
T KOG2041|consen 901 AQRFQ 905 (1189)
T ss_pred HHhcc
Confidence 66543
No 191
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.33 E-value=0.17 Score=48.68 Aligned_cols=112 Identities=10% Similarity=0.084 Sum_probs=84.7
Q ss_pred HhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHc
Q 005802 392 ALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHH 471 (676)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 471 (676)
..+.+..+.-|...|....|..+-... . -|+...|-..+.+++..++|++-.++-.. +.+++-|...+..|.+.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKY 250 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHC
Confidence 345566667777778877777765443 3 47888888899999999999988887654 56788999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHc
Q 005802 472 GHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSM 519 (676)
Q Consensus 472 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 519 (676)
|+..+|..++.+ ++ +..-+..|.+.|++.+|.+.--+.
T Consensus 251 ~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999988876 12 244566678889998888775544
No 192
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.28 E-value=0.0023 Score=63.00 Aligned_cols=117 Identities=12% Similarity=0.133 Sum_probs=86.4
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHhhCCCCC-----CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHH
Q 005802 191 NLISKNAMVAACCREGEMEMALKTFWRQPELN-----DAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASA 265 (676)
Q Consensus 191 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 265 (676)
+......+++.+....+++.+..++-+....| -..+..++|+.|.+.|..+.++.+++.=...|+=||..|++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 33444555556666666666666665444332 2345678999999999999999999988888999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 005802 266 LSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKC 307 (676)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (676)
|..+.+.|++..|.++..+|...+...+..++..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999998888877766666666555555544
No 193
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.28 Score=50.20 Aligned_cols=186 Identities=14% Similarity=0.063 Sum_probs=88.6
Q ss_pred CCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHH----------HHHHHhcCChhHHHHHHhhCCCCCCeee
Q 005802 157 DASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAM----------VAACCREGEMEMALKTFWRQPELNDAVS 226 (676)
Q Consensus 157 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l----------~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 226 (676)
.|.+..|..|.......-.++.|...|-++..-+.......| ...-+-.|++++|.+++-.+. ..|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~d-rrDL-- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDAD-RRDL-- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccc-hhhh--
Confidence 455566666666666666666666666555442222111111 112223467777777776665 3332
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc----HhHHHHHHHHHhCCCChHHHHHHHHH------------------
Q 005802 227 WNTLISGYVQNGDAEEGLKLFVRMGENGVRWN----EHTFASALSACCGLRNVKCAKEIHSW------------------ 284 (676)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~------------------ 284 (676)
.|....+.|+|-.+.++++.= |-.-| ...++.+...++....++.|.+.|..
T Consensus 766 ---Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~ 839 (1189)
T KOG2041|consen 766 ---AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFG 839 (1189)
T ss_pred ---hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhh
Confidence 234444555555554444321 11011 12233333333333333333333322
Q ss_pred -HH--HhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCc
Q 005802 285 -VL--KNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNV 356 (676)
Q Consensus 285 -~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 356 (676)
+. ...++.+....-.+.+++.+.|.-++|.+.+-+-..|. .-+..|...++|.+|.++-++..-|.+
T Consensus 840 ~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 840 ELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQLPQV 909 (1189)
T ss_pred hHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 11 11234455555566666666666666665554444432 233445556666666666665554433
No 194
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.23 E-value=0.003 Score=59.87 Aligned_cols=129 Identities=11% Similarity=0.115 Sum_probs=102.1
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh-cCCHHHHHHHHHhCC--CCCcHHHHHHHHHH
Q 005802 494 VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR-ANQLEKAIEFMKSIP--TEEDAVILGSFLNV 570 (676)
Q Consensus 494 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 570 (676)
.+|..+++...+.+..+.|..+|.+.++. -..+..+|...+..-.+ .++.+.|.++|+... .+.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888889999999999999743 22345666666666444 566777999999988 67788899999999
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCC---ccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNK---ARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
+...++.+.|..+|++++...|.+. .+|..++.--.+.|+.+...++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999866644 57888888889999999999999988774
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.21 E-value=0.0061 Score=57.63 Aligned_cols=129 Identities=12% Similarity=0.045 Sum_probs=68.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHc---hhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCCcHH
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSM---TADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--------TEEDAV 562 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~ 562 (676)
.|..|.+.|.-.|+++.|+...+.- .+++|-... ...+..|..+++-.|+++.|.+.++... ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3444555555556666665543321 122232222 4455556666666666666666655432 112233
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcc------cCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRL------EGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.--+|.++|....++++|+.+..+=+.+ .-.....+..|+.+|...|..++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4445566666666666666666554433 112344566677777777777777666655443
No 196
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.20 E-value=0.0014 Score=63.83 Aligned_cols=67 Identities=13% Similarity=-0.113 Sum_probs=47.9
Q ss_pred CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc---HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 558 EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR---YVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
+.++..+..+..+|...|++++|+..++++++++|+++.. |..++.+|...|+.++|+..++++.+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455667777777777777777777777777777776643 777777777777777777777777664
No 197
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.15 Score=48.84 Aligned_cols=87 Identities=16% Similarity=0.046 Sum_probs=58.2
Q ss_pred HHHHcCChhHHHHHHHHHHH---CCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhc
Q 005802 467 CYAHHGHEEKAILLFEEMLE---KGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRA 542 (676)
Q Consensus 467 ~~~~~~~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 542 (676)
-..+.|++..|.+.|.+.+. .+.+|+...|.....+..+.|+..+|+.-.+... .+.|. ...|..-..++.-.
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHH
Confidence 34667888888888887775 2344455556666666777888888888777765 44444 44444445566667
Q ss_pred CCHHHHHHHHHhCC
Q 005802 543 NQLEKAIEFMKSIP 556 (676)
Q Consensus 543 g~~~~A~~~~~~~~ 556 (676)
++|++|++-+++..
T Consensus 335 e~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888777665
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.17 E-value=0.0011 Score=48.08 Aligned_cols=65 Identities=17% Similarity=0.107 Sum_probs=51.8
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHH
Q 005802 536 IDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQ 600 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 600 (676)
-..|.+.+++++|++.++.+. .+.++..|.....++...|++++|...++++.+..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 356778888888888888887 45567777788888899999999999999999988877655443
No 199
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.17 E-value=0.0045 Score=51.17 Aligned_cols=88 Identities=10% Similarity=-0.016 Sum_probs=53.3
Q ss_pred HHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCC
Q 005802 500 LSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRN 576 (676)
Q Consensus 500 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 576 (676)
..-+...|++++|..+|+.+. .+.|. ..-|-.|.-++-..|++++|++.+..+. .+.++..+-.+..++...|+
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~---~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLT---IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 333455666666666666665 33444 4455566666666666666666666655 34455566666666666666
Q ss_pred HhHHHHHHHHHHcc
Q 005802 577 AELAGEAEEKLLRL 590 (676)
Q Consensus 577 ~~~a~~~~~~~~~~ 590 (676)
.+.|...|+.++..
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666655
No 200
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.16 E-value=0.032 Score=53.16 Aligned_cols=111 Identities=15% Similarity=0.250 Sum_probs=51.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHc-CChhHHHHHHHHHHH----CCCCCC--HhHHHHHHHHhhcc
Q 005802 434 VDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHH-GHEEKAILLFEEMLE----KGIKPD--AVTFVAILSAFRHC 506 (676)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~----~g~~p~--~~~~~~ll~~~~~~ 506 (676)
+..|...|++..|-..+. .+...|... |++++|++.|++..+ .| .+. ..++..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 344555555555544433 344455555 666666666666543 22 111 22344455556666
Q ss_pred CcHHHHHHHHHHchhhcC----CCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 507 GSVEMGEKYFNSMTADYK----ISPET-DHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 507 g~~~~a~~~~~~~~~~~~----~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
|++++|.++|++.....- .+++. ..+...+-++...|+...|.+.+++..
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666666666543210 01111 122233444555566666666666543
No 201
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.15 E-value=0.28 Score=47.70 Aligned_cols=190 Identities=9% Similarity=0.062 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCcc-------hHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHh
Q 005802 428 KLISTLVDMYSKCGNMTYAEIIFQNFI--ERDLV-------LYNVMIACYAH----HGHEEKAILLFEEMLEKGIKPDAV 494 (676)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~-------~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~ 494 (676)
.++..++....+.++...|.+.+.-+. .|+.. +-..+-+..+. .-+...=+.+|+......+.-. .
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-Q 377 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-Q 377 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-H
Confidence 355666666677777777776665443 33222 11112222221 1223334455655555432211 1
Q ss_pred HHHHHHHH---hhccCc-HHHHHHHHHHchhhcCCCCC-HHHHHHHH----HHHhh---cCCHHH---HHHHHHhCCCCC
Q 005802 495 TFVAILSA---FRHCGS-VEMGEKYFNSMTADYKISPE-TDHYACMI----DLYGR---ANQLEK---AIEFMKSIPTEE 559 (676)
Q Consensus 495 ~~~~ll~~---~~~~g~-~~~a~~~~~~~~~~~~~~p~-~~~~~~l~----~~~~~---~g~~~~---A~~~~~~~~~~~ 559 (676)
....|+.+ +-+.|. -++|+++++...+ +.|. ...-+.+. ..|.. ...+.+ -+.++++...+|
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 12223322 333444 7888888888863 3333 33333222 12221 122222 233344544444
Q ss_pred ----cHHHHHHHHHH--HHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 560 ----DAVILGSFLNV--CRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 560 ----~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
+...-+.+..+ +..+|++.++.-...-+.+..| ++.+|..+|-++....++++|..++..+.
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 34455556554 5789999999999999999999 79999999999999999999999998764
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.14 E-value=0.0051 Score=57.13 Aligned_cols=102 Identities=9% Similarity=0.034 Sum_probs=71.9
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----cHHHHHHH
Q 005802 494 VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE----DAVILGSF 567 (676)
Q Consensus 494 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l 567 (676)
..|...+....+.|++++|...|+.+...+.-.+- ...+-.+..+|...|++++|...|+.+. ..| .+..+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555454445668888888888888765322111 3466677888888888888888888876 222 34455566
Q ss_pred HHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 568 LNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 568 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
+.++...|+.+.|...++++++..|++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6778888999999999999999888864
No 203
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.09 E-value=0.078 Score=48.95 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=46.7
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCCCc---cHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKA---RYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
+...|.+.|.+..|..-++.+++..|+.+. ....++.+|...|..++|..+.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 344678899999999999999999887544 56788899999999999999887654
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.05 E-value=0.11 Score=52.49 Aligned_cols=84 Identities=13% Similarity=0.089 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHH--------
Q 005802 393 LILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVM-------- 464 (676)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-------- 464 (676)
.+...+...+-+...+..|.++|..|-+. .++++.+...+++++|..+-+..++--...|...
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 34444444445556666777777665442 3567778888888888888888775322222222
Q ss_pred -----HHHHHHcCChhHHHHHHHHHH
Q 005802 465 -----IACYAHHGHEEKAILLFEEML 485 (676)
Q Consensus 465 -----~~~~~~~~~~~~A~~~~~~m~ 485 (676)
-++|.+.|+-.+|..+++++-
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 234455555555555555544
No 205
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.04 E-value=0.00088 Score=42.52 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHH
Q 005802 562 VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLAN 603 (676)
Q Consensus 562 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 603 (676)
.++..+..+|...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788889999999999999999999999999988887764
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.00 E-value=0.34 Score=46.10 Aligned_cols=241 Identities=15% Similarity=0.080 Sum_probs=155.8
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCHhH----HHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 005802 368 KAQNCEALFDLLSEFVTKEGVVTDALI----LVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNM 443 (676)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (676)
-.|+++.|.+-|+.|+. |..| +..|.-...+.|+.+.|..+-+...... +.-.....+.+...|..|++
T Consensus 132 ~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 132 LEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDW 204 (531)
T ss_pred hcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCCh
Confidence 35777777777777721 2222 2223333346667777666665555443 33345667788888999999
Q ss_pred HHHHHHHhhcC-----CCCcc--hHHHHHHHHH---HcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCcHHHH
Q 005802 444 TYAEIIFQNFI-----ERDLV--LYNVMIACYA---HHGHEEKAILLFEEMLEKGIKPDAV-TFVAILSAFRHCGSVEMG 512 (676)
Q Consensus 444 ~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a 512 (676)
+.|+++.+.-. ++++. .-..|+.+-. -.-+...|...-.+..+ +.||.. .-.....++.+.|+..++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 99998887543 34432 1122222211 12245555555444444 667743 333445778999999999
Q ss_pred HHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHH----HHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 005802 513 EKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAI----EFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLL 588 (676)
Q Consensus 513 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 588 (676)
-.+++.+-+. .|.+.++..++ +.+.|+..... +-++.|. +.+......+..+....|++..|..--+.+.
T Consensus 283 ~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 283 SKILETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 9999999744 56655543333 34555543221 2234443 5567778888889999999999999999999
Q ss_pred cccCCCCccHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 005802 589 RLEGNNKARYVQLANVYAAE-GNWAEMGRIRKQMRGM 624 (676)
Q Consensus 589 ~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 624 (676)
...|. .++|..|+++-... |+-.++...+-+..+.
T Consensus 357 r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 357 REAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 98887 57899999998766 9999999998877654
No 207
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.99 E-value=0.39 Score=46.65 Aligned_cols=133 Identities=14% Similarity=0.142 Sum_probs=89.9
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHH-HHHH
Q 005802 458 LVLYNVMIACYAHHGHEEKAILLFEEMLEKG-IKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDH-YACM 535 (676)
Q Consensus 458 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l 535 (676)
..+|..++..-.+..-.+.|..+|-+..+.| +.++...+++++..++. |++.-|..+|+.=... -||... -...
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3456667777677777777888888888777 55667777777775544 6777788887765443 244333 3355
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCC--cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 536 IDLYGRANQLEKAIEFMKSIP--TEE--DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
+..+.+-++-+.|..+|+... ... -...|..++.--..-|+...+..+-+++.+..|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 666777788888888887654 122 24567777777777788888887777777777753
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.98 E-value=0.36 Score=45.98 Aligned_cols=254 Identities=15% Similarity=0.123 Sum_probs=165.7
Q ss_pred hHHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHH--HHhhcChhHHHHHHHHHHHcCCCCChhH--HH
Q 005802 358 VWTALFSGYVK--AQNCEALFDLLSEFVTKEGVVTDALILVILLGA--CALQAALHPGKEIHAYILRMGVQMDKKL--IS 431 (676)
Q Consensus 358 ~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~ 431 (676)
.|.+|-.++.. .|+-..|.+.-.+ ...-+..|...+..++.+ -.-.|+.+.|.+-|+.|.+. |.... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~--~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTAR--ASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHH--HHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHH
Confidence 45566666554 4666777666655 233455566566666654 34679999999999999762 22222 22
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHh--HHHHHHHHhh-
Q 005802 432 TLVDMYSKCGNMTYAEIIFQNFIE--R-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKG-IKPDAV--TFVAILSAFR- 504 (676)
Q Consensus 432 ~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~- 504 (676)
.|.-.--+.|..+.|...-+..-. | -.-.+.+.+...|..|+++.|+++++.-++.. +.++.. .-..|+.+-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 333344568889988888776642 2 34477889999999999999999999877632 445533 2223333221
Q ss_pred --ccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhCCHhH-
Q 005802 505 --HCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAEL- 579 (676)
Q Consensus 505 --~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~- 579 (676)
-..+...|...-.+.. ++.|+ ...-..-..+|.+.|+..++-.+++.+= ..|.+.++..... .+.|+...
T Consensus 239 s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~--ar~gdta~d 313 (531)
T COG3898 239 SLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR--ARSGDTALD 313 (531)
T ss_pred HHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH--hcCCCcHHH
Confidence 1235666666555443 67788 3334445688999999999999999876 6788877754332 34454322
Q ss_pred HHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 580 AGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 580 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
-.+-.+++..+.|++......++.+-...|++..|..--+..
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 123334455668999999999999998999888776544443
No 209
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.96 E-value=0.032 Score=44.49 Aligned_cols=93 Identities=14% Similarity=0.205 Sum_probs=66.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHh
Q 005802 464 MIACYAHHGHEEKAILLFEEMLEKGIKPD--AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYG 540 (676)
Q Consensus 464 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 540 (676)
+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566778999999999999998886655 34566677788889999999999998876532111 1222233455777
Q ss_pred hcCCHHHHHHHHHhCC
Q 005802 541 RANQLEKAIEFMKSIP 556 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~ 556 (676)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8899999988875543
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.96 E-value=0.085 Score=51.07 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=99.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC-------CcchHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 005802 431 STLVDMYSKCGNMTYAEIIFQNFIER-------DLVLYNVMIACYAH---HGHEEKAILLFEEMLEKGIKPDAVTFVAIL 500 (676)
Q Consensus 431 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 500 (676)
..++-.|....+++...++.+.+... ....-....-++-+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555677777777777777777643 11122233445556 788999999988866666677788887777
Q ss_pred HHhhc---------cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCC-HH---HHHHHH---HhCC-------C
Q 005802 501 SAFRH---------CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQ-LE---KAIEFM---KSIP-------T 557 (676)
Q Consensus 501 ~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~~-------~ 557 (676)
+.|-. ....++|...|.+.- .+.|+..+=-.++..+.-.|. .+ +..++- .... .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 66532 234677888887554 555663322222333333332 21 222222 1111 2
Q ss_pred CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 558 EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
..+-..+.+++.++.-.|++++|.+.++++.++.|+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2345566788999999999999999999999987664
No 211
>PRK11906 transcriptional regulator; Provisional
Probab=96.92 E-value=0.013 Score=57.48 Aligned_cols=66 Identities=15% Similarity=-0.017 Sum_probs=33.6
Q ss_pred CcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 559 EDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 559 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
.|+.....++.+....++++.|...++++..++|+.+..|...+.+..-.|+.++|.+.+++..+.
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 344444444444444444555555555555555555555555555555555555555555554443
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.92 E-value=0.0012 Score=48.53 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcc---cC-C---CCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRL---EG-N---NKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
++..+..+|...|++++|+..+++++++ .+ + -..++..++.+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555666666666666666666544 11 1 13456677777777777777777777654
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.91 E-value=0.038 Score=49.57 Aligned_cols=50 Identities=12% Similarity=-0.023 Sum_probs=38.3
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCCCc---cHHHHHHHHHhcCChhHHHH
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKA---RYVQLANVYAAEGNWAEMGR 616 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 616 (676)
+...|.+.|.+..|..-++.+++..|+.+. ....|+.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 345678899999999999999999998644 46778888999998885543
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.076 Score=47.40 Aligned_cols=136 Identities=12% Similarity=0.060 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhc----CCCCCHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADY----KISPETDHYACM 535 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l 535 (676)
..+.++..+.-.|.+.-.+..+++.++...+.++.....|.+.-.+.||.+.|..+|+...+.. ++.-........
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456667777788888888889998887656677778888888889999999999999775442 222222333334
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 536 IDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
...|.-++++.+|...+.+++ .+.++...++-.-+..-.|+...|++..+.+.+..|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 455667788888888888887 344556666555555667888999999999998888743
No 215
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.86 E-value=0.0094 Score=51.81 Aligned_cols=89 Identities=16% Similarity=0.253 Sum_probs=71.8
Q ss_pred CCCeeeHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCC----------------CChHHHH
Q 005802 221 LNDAVSWNTLISGYVQN-----GDAEEGLKLFVRMGENGVRWNEHTFASALSACCGL----------------RNVKCAK 279 (676)
Q Consensus 221 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a~ 279 (676)
..+-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+=+. .+-+.|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 55667777777777654 55666677788888999999999999999887652 2346799
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 005802 280 EIHSWVLKNGLISNPFVSSGIVDVYCKCEN 309 (676)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 309 (676)
+++++|...|+.||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999999988765
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.86 E-value=0.11 Score=52.45 Aligned_cols=226 Identities=10% Similarity=0.069 Sum_probs=109.4
Q ss_pred hHHHHHHHHHccCCcHHHH--HHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCC-chhhHHH-----H
Q 005802 127 TVTSTLNLCVKLLNVGFGR--QLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEV-NLISKNA-----M 198 (676)
Q Consensus 127 ~~~~ll~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~-----l 198 (676)
.++..=++|.+.++..-.+ .-++.+++.|-.|+.. .+...++-.|++.+|.++|.+..... -...|+- +
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~ 676 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDY 676 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHH
Confidence 3444455666666554333 3355677777777765 45667778899999999987765421 1122221 1
Q ss_pred HHHHHhcCChhHHHHHHhhCCC-CCCeeeHHHHHHHHHhcCChhHHHHHHHH------HHhCCCC---CcHhHHHHHHHH
Q 005802 199 VAACCREGEMEMALKTFWRQPE-LNDAVSWNTLISGYVQNGDAEEGLKLFVR------MGENGVR---WNEHTFASALSA 268 (676)
Q Consensus 199 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~g~~---p~~~~~~~ll~~ 268 (676)
..-+...|.-++-..+.++-.. ..|+.--.+....+..+|+.++|.++.-+ +.+.+-+ .+..+...+...
T Consensus 677 aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~y 756 (1081)
T KOG1538|consen 677 AQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATY 756 (1081)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHH
Confidence 1222333333332222221110 11111122333344455655555544211 1111111 122333334444
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 005802 269 CCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHF 348 (676)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 348 (676)
+.+...+..|.++|..|-.. ..+++.....+++++|..+-++.++--...|....+-++...++++|.+
T Consensus 757 lk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk-- 825 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK-- 825 (1081)
T ss_pred HhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH--
Confidence 44455555566665554221 2345555566666666655555554333334444444444444444443
Q ss_pred hccCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 005802 349 DSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEF 382 (676)
Q Consensus 349 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 382 (676)
+|.+.|+..+|.++++++
T Consensus 826 ----------------AfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 826 ----------------AFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred ----------------HHHHhcchHHHHHHHHHh
Confidence 455667777777777775
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.047 Score=48.64 Aligned_cols=133 Identities=9% Similarity=0.038 Sum_probs=105.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CC-----CcHHHHHH
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP---TE-----EDAVILGS 566 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~-----~~~~~~~~ 566 (676)
..+.++..+.-.|.+.-...++++++++ ..+.++.....|.+.-.+.|+.+.|...|++.. .. ....+...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4456777777788898899999999875 434457777888888899999999999999654 11 22223334
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNR 628 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 628 (676)
....+..++++..|...+.+....+|.++...+.-+-++.-.|+..+|++.++.|++.-+..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 44456778899999999999999999999998888888888999999999999999876644
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.75 Score=47.83 Aligned_cols=85 Identities=9% Similarity=-0.016 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChH
Q 005802 294 PFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCE 373 (676)
Q Consensus 294 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 373 (676)
..+.+..+.-+...|+..+|.++-.+..-||...|-.-+.++...++|++-.++-+.... +.-|..++.+|.+.|+.+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks--PIGy~PFVe~c~~~~n~~ 761 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS--PIGYLPFVEACLKQGNKD 761 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--CCCchhHHHHHHhcccHH
Confidence 334444455555556666666555555555555555555555555555554444443332 344445555555555555
Q ss_pred HHHHHHH
Q 005802 374 ALFDLLS 380 (676)
Q Consensus 374 ~a~~~~~ 380 (676)
+|.+++.
T Consensus 762 EA~KYip 768 (829)
T KOG2280|consen 762 EAKKYIP 768 (829)
T ss_pred HHhhhhh
Confidence 5555444
No 219
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.81 E-value=0.015 Score=50.67 Aligned_cols=89 Identities=18% Similarity=0.372 Sum_probs=70.2
Q ss_pred CCCcchHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc----------------CcHHHHH
Q 005802 455 ERDLVLYNVMIACYAH-----HGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHC----------------GSVEMGE 513 (676)
Q Consensus 455 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------g~~~~a~ 513 (676)
..+-.+|..+++.|.+ .|..+=....+..|.+-|+.-|..+|+.|+..+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4466667777777664 466777777888999999999999999999877542 3456789
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHhhcCC
Q 005802 514 KYFNSMTADYKISPETDHYACMIDLYGRANQ 544 (676)
Q Consensus 514 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 544 (676)
+++++| +.+|+.||..++..|++.+++.+.
T Consensus 124 ~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 999999 455999999999999999987764
No 220
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.80 E-value=0.031 Score=45.46 Aligned_cols=93 Identities=14% Similarity=0.018 Sum_probs=63.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC--CC--C-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc---HHHHHHHH
Q 005802 534 CMIDLYGRANQLEKAIEFMKSIP--TE--E-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR---YVQLANVY 605 (676)
Q Consensus 534 ~l~~~~~~~g~~~~A~~~~~~~~--~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~ 605 (676)
.-.....+.|++++|.+.|+.+. .+ | ....-..++.++...++++.|...+++.++++|.++.+ +...|-++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 33455567788888888887776 11 1 34455667778899999999999999999998887664 33444444
Q ss_pred HhcCC---------------hhHHHHHHHHHHhCCC
Q 005802 606 AAEGN---------------WAEMGRIRKQMRGMKG 626 (676)
Q Consensus 606 ~~~g~---------------~~~A~~~~~~~~~~~~ 626 (676)
..... ..+|...|+.+.+.-+
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 44443 5667777777665544
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.79 E-value=0.57 Score=45.54 Aligned_cols=124 Identities=17% Similarity=0.228 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCcchH-HHHHHHHHH
Q 005802 395 LVILLGACALQAALHPGKEIHAYILRMG-VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI--ERDLVLY-NVMIACYAH 470 (676)
Q Consensus 395 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~-~~l~~~~~~ 470 (676)
|...++...+..-++.|+.+|-+..+.+ +.++..++++++..++ .|+...|..+|+--. -+|...| +..+.-+..
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3344444445555566666666666655 4455555566555544 345555555555332 2333332 223444455
Q ss_pred cCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHhhccCcHHHHHHHHHHch
Q 005802 471 HGHEEKAILLFEEMLEKGIKPD--AVTFVAILSAFRHCGSVEMGEKYFNSMT 520 (676)
Q Consensus 471 ~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 520 (676)
.++-+.|..+|+..+.+ +..+ ...|..+|..-..-|+...+..+=+++.
T Consensus 479 inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 479 INDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred hCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 55555555555543332 1112 2345555555555555555555555554
No 222
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.77 E-value=0.012 Score=49.97 Aligned_cols=91 Identities=13% Similarity=0.029 Sum_probs=71.1
Q ss_pred HHHhhcCCHHHHHHHHHhCC--CCCcH-----HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC
Q 005802 537 DLYGRANQLEKAIEFMKSIP--TEEDA-----VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG 609 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~--~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 609 (676)
.-+.+.|++++|..-|.++. .++-+ ..|..-..+..+.+.++.|+.-..++++++|........-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 44566778888877777665 33322 233333446778899999999999999999998888888899999999
Q ss_pred ChhHHHHHHHHHHhCCCc
Q 005802 610 NWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 610 ~~~~A~~~~~~~~~~~~~ 627 (676)
++++|++-++++.+..+.
T Consensus 183 k~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPS 200 (271)
T ss_pred hHHHHHHHHHHHHHhCcc
Confidence 999999999999876554
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.011 Score=56.37 Aligned_cols=96 Identities=18% Similarity=0.124 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
..++..|.-++.+.+++.+|++...+.. .+++.-.+-.=..+|...|+++.|+..|+++++..|.|..+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4457778889999999999999998887 56778788888889999999999999999999999999999999988888
Q ss_pred hcCChhHH-HHHHHHHHhC
Q 005802 607 AEGNWAEM-GRIRKQMRGM 624 (676)
Q Consensus 607 ~~g~~~~A-~~~~~~~~~~ 624 (676)
+...+++. .++|..|-..
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 87776655 7889888764
No 224
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.06 Score=49.55 Aligned_cols=104 Identities=12% Similarity=0.037 Sum_probs=81.0
Q ss_pred CCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhc---CCHHHHHHHHHhCC--CCCcHHH
Q 005802 490 KPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRA---NQLEKAIEFMKSIP--TEEDAVI 563 (676)
Q Consensus 490 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~~--~~~~~~~ 563 (676)
+-|...|..|..+|...|+.+.|...|....+ +.|+ +..+..+..++..+ ....++..+|+++. .+.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 34678899999999999999999999998864 3343 67777777766543 35678889999888 4446667
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc
Q 005802 564 LGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA 596 (676)
Q Consensus 564 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 596 (676)
...|...+...|++.+|...++.+.+..|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 777777899999999999999999999777644
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.60 E-value=0.0022 Score=47.15 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCC---c-HHHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP-----TEE---D-AVILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
..+++.+...|...|++++|++.+++.. ..+ + ..++..+..++...|++++|++.++++.++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566677777777777777777776654 221 1 345667777788888888888888887654
No 226
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.51 E-value=0.68 Score=42.78 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=28.7
Q ss_pred HHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHH
Q 005802 501 SAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMK 553 (676)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 553 (676)
.-|.+.|.+..|..-++.+.+.+.-.|. ......++.+|.+.|..++|.++..
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3455556666666666666555433333 4444555566666666666555443
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.51 E-value=0.012 Score=53.21 Aligned_cols=61 Identities=11% Similarity=-0.042 Sum_probs=41.8
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCC---CccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNN---KARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
|+.++...|+++.|...|..+.+..|++ |..+..|+.+..+.|+.++|..+|+.+.++-++
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 5556667777777777777777665554 345667777777777777777777777766554
No 228
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.42 E-value=0.16 Score=45.56 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=74.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHh
Q 005802 463 VMIACYAHHGHEEKAILLFEEMLEKGIKPD--AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYG 540 (676)
Q Consensus 463 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 540 (676)
.....+...|++.+|.+.|+++........ ......++.++.+.|+++.|...++.....+.-.|.. .+.....+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHH
Confidence 344555667777777777777776421111 2334455666777777777777777776665444432 1112222211
Q ss_pred hcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc-----------------cHHHHHH
Q 005802 541 RANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA-----------------RYVQLAN 603 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~ 603 (676)
......... ......+...+|...++.+++..|+++- .-..++.
T Consensus 89 ~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100 0011223345566666666666666533 2245678
Q ss_pred HHHhcCChhHHHHHHHHHHhCCC
Q 005802 604 VYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.|.+.|++..|..-++.+.+.-+
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHST
T ss_pred HHHHcccHHHHHHHHHHHHHHCC
Confidence 89999999999999999887533
No 229
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.38 E-value=0.33 Score=38.45 Aligned_cols=141 Identities=14% Similarity=0.171 Sum_probs=83.5
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHH
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEK 547 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 547 (676)
+.-.|.+++..++..+.... .+..-++-++--....-+-+-..+.++..-+-+.+.|- .....++.+|.+.|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc---
Confidence 34467888888888877753 23344444444333444445556666665332222211 112234444444443
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 548 AIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 548 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
+...++..+.....+|.-++-.+++..+.+-+..+|.....++.+|.+.|+..+|.++++++-+.|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34445556677888999999999999988766667899999999999999999999999999998875
No 230
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=2 Score=45.61 Aligned_cols=181 Identities=14% Similarity=0.106 Sum_probs=106.4
Q ss_pred hhhHHHHHhhhccchHHHHHhhhhcCCCCc--hhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCC
Q 005802 162 AVSSLIDMYSKCRCYEEACRVFEGCTEEVN--LISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGD 239 (676)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~ 239 (676)
....-++.+.+...++-|..+...-..+++ ........+-+.+.|++++|..-+-+-...- --..+|.-|....+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l---e~s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL---EPSEVIKKFLDAQR 412 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC---ChHHHHHHhcCHHH
Confidence 344556666777777777777665433221 1223334455667788888877775433111 12456667777777
Q ss_pred hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 005802 240 AEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLL 319 (676)
Q Consensus 240 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 319 (676)
...-..+++.+.+.|+. +...-..|+.+|.+.++.+.-.++.+... .|.. .+-....+..+.+.+-.+.|..+-..
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 77788888888888875 44445678888888888887766665433 2211 11123345555555656666544333
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCC
Q 005802 320 KGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTE 353 (676)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (676)
... +...... .+-..+++++|.+.+..++-
T Consensus 489 ~~~-he~vl~i---lle~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 489 FKK-HEWVLDI---LLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred hcc-CHHHHHH---HHHHhcCHHHHHHHHhcCCH
Confidence 322 2222222 23446788888888888764
No 231
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.22 E-value=0.037 Score=43.43 Aligned_cols=90 Identities=20% Similarity=0.165 Sum_probs=67.5
Q ss_pred HHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-cCCCC---ccHHHHHHHHHhcCC
Q 005802 537 DLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL-EGNNK---ARYVQLANVYAAEGN 610 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~---~~~~~l~~~~~~~g~ 610 (676)
-++...|+++.|++.|.... .+..+..|+.-..++.-+|+.++|+.-+++++++ .|... ..|..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 45667788888888887766 4557778888888888888888888888888887 33322 246677778888888
Q ss_pred hhHHHHHHHHHHhCCC
Q 005802 611 WAEMGRIRKQMRGMKG 626 (676)
Q Consensus 611 ~~~A~~~~~~~~~~~~ 626 (676)
-+.|+.-|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888887776654
No 232
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.20 E-value=0.0088 Score=56.59 Aligned_cols=93 Identities=18% Similarity=0.108 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc------cCCCC
Q 005802 530 DHYACMIDLYGRANQLEKAIEFMKSIP--------TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL------EGNNK 595 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~~ 595 (676)
..|..|...|.-.|+++.|+..-+.-. .......+..+.+++.-.|+++.|.+.|++...+ ....+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 445666666667789999987754322 1123446778889999999999999999987654 22346
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 596 ARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
.....|+++|.-...+++|+.+..+=.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998876543
No 233
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.18 E-value=1.8 Score=44.18 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=122.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFIERD---LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSA 502 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 502 (676)
+...|...++.-.+.|+.+.+.-+|+...-|- ...|-..+.-....|+.+-|..++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45567777788888999999999999887552 234555555555568888888777666553222222222222223
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHH---HHHHhCC-CCCcHHHHHHHH----H-HHH
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAI---EFMKSIP-TEEDAVILGSFL----N-VCR 572 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~~~~l~----~-~~~ 572 (676)
+...|++..|..+++...++ . |+ ...-..-+....+.|..+.+. +++.... ...+......+. + .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 45678999999999999875 3 66 333334456667888888888 5555544 222333332222 2 355
Q ss_pred HhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC
Q 005802 573 LNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG 609 (676)
Q Consensus 573 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 609 (676)
..++.+.|..++.++.+..|++...|..+.+.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 6789999999999999999999999999988877766
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.10 E-value=0.28 Score=50.35 Aligned_cols=161 Identities=17% Similarity=0.136 Sum_probs=108.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCH-----hHHHHHHHHhh----ccCcHHHHHHHHHHchhhcCCCCCHH
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEKG-IKPDA-----VTFVAILSAFR----HCGSVEMGEKYFNSMTADYKISPETD 530 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~ 530 (676)
...++....-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++ .....+.|.++++.+..+ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445555566677777777776655421 22111 12333333332 256788899999999865 47755
Q ss_pred HHH-HHHHHHhhcCCHHHHHHHHHhCCC------CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHH-HHH
Q 005802 531 HYA-CMIDLYGRANQLEKAIEFMKSIPT------EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYV-QLA 602 (676)
Q Consensus 531 ~~~-~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l~ 602 (676)
.|. --.+.+...|+.++|++.|+++.. +-....+-.+.+.+....++++|...+.++.+.+.-+...|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 554 335667788999999999997661 113345566777888999999999999999998777666655 444
Q ss_pred HHHHhcCCh-------hHHHHHHHHHHhC
Q 005802 603 NVYAAEGNW-------AEMGRIRKQMRGM 624 (676)
Q Consensus 603 ~~~~~~g~~-------~~A~~~~~~~~~~ 624 (676)
.++...|+. ++|.+++++....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 556778888 8888888887653
No 235
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.10 E-value=0.02 Score=48.35 Aligned_cols=61 Identities=23% Similarity=0.206 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.+..++..+...|+++.|...+++++..+|-+...|..+..+|...|+..+|.++++.+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4555666788899999999999999999999999999999999999999999999998865
No 236
>PRK11906 transcriptional regulator; Provisional
Probab=96.07 E-value=0.49 Score=46.79 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=98.0
Q ss_pred ChhHHHHHHHHHHH-CCCCCC-HhHHHHHHHHhhc---------cCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHh
Q 005802 473 HEEKAILLFEEMLE-KGIKPD-AVTFVAILSAFRH---------CGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYG 540 (676)
Q Consensus 473 ~~~~A~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 540 (676)
..+.|+.+|.+... +.+.|+ ...|..+..++.. ..+..+|.++.++.. .+.|+ ......+..++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHH
Confidence 35677888888872 224565 3344433333221 334566777777665 33444 777777888888
Q ss_pred hcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHH--HHHHHHHhcCChhHHHH
Q 005802 541 RANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYV--QLANVYAAEGNWAEMGR 616 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~ 616 (676)
-.|+.+.|..+|++.. .+....+|......+.-.|+.++|.+.++++++++|.-...-. ..++.|+. ...++|++
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHH
Confidence 8888999999999988 4446668888888889999999999999999999998654433 33334554 45677777
Q ss_pred HHH
Q 005802 617 IRK 619 (676)
Q Consensus 617 ~~~ 619 (676)
++-
T Consensus 429 ~~~ 431 (458)
T PRK11906 429 LYY 431 (458)
T ss_pred HHh
Confidence 663
No 237
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.01 E-value=0.08 Score=42.72 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=38.1
Q ss_pred CCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 005802 488 GIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDL 538 (676)
Q Consensus 488 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 538 (676)
...|+..+..+++.+|+..|++..|.++++...+.|+++-+...|..|+.=
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456777777888888888888888888888887777776667777766653
No 238
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.95 E-value=3 Score=44.75 Aligned_cols=115 Identities=10% Similarity=0.042 Sum_probs=54.1
Q ss_pred CcHHHHHHHHHHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhCCHhHHHHH
Q 005802 507 GSVEMGEKYFNSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAELAGEA 583 (676)
Q Consensus 507 g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 583 (676)
.+.+.|..++.......++.+. ...+..++......+..++|...+.... ...+...+.--+......++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 3445566666555333233332 2223333333333322445555555543 112333333333333455566655555
Q ss_pred HHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 584 EEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 584 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
+..+-......+....-++.++...|+.++|..+++.+
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55544333334445556666655566666666666655
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.56 Score=43.21 Aligned_cols=120 Identities=8% Similarity=0.078 Sum_probs=79.7
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHH---HHHHHHHHhCCH
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILG---SFLNVCRLNRNA 577 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~ 577 (676)
.....|++.+|..+|+..... .|. ...-..|+.+|...|+.+.|..++..++..-....+. .-+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 355678888888888877643 233 5566677888888888888888888887332222222 233344444444
Q ss_pred hHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 578 ELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 578 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
.+...+-.+ ...+|+|...-..|+..|...|+.++|.+.+=.+.++.
T Consensus 220 ~~~~~l~~~-~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQDLQRR-LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 444443333 33588888888889999999999999888776666543
No 240
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.70 E-value=1.7 Score=40.01 Aligned_cols=196 Identities=18% Similarity=0.142 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFI-----ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILS 501 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 501 (676)
..........+...+.+..+...+.... ......+......+...+++..+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455555666666677776666665543 22334555555666666777777777777766433321 12222222
Q ss_pred -HhhccCcHHHHHHHHHHchhhcCCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCC-cHHHHHHHHHHHHH
Q 005802 502 -AFRHCGSVEMGEKYFNSMTADYKISP----ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEE-DAVILGSFLNVCRL 573 (676)
Q Consensus 502 -~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~~l~~~~~~ 573 (676)
.+...|+++.|...++.... ..| ....+......+...++.++|...+.+.. .+. ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 57777888888888877743 222 23334444444666778888888877766 223 35666777777777
Q ss_pred hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 574 NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 574 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.++++.+...+..+....|.....+..++..+...|+++++...++.......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 77888888888888888777556666777777766778888887777765443
No 241
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=3.6 Score=43.76 Aligned_cols=179 Identities=12% Similarity=0.066 Sum_probs=114.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCCCCCccc---HHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHH
Q 005802 58 SWNTIISACIKSHDLKQARSLFDSSPHKDLVT---YNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNL 134 (676)
Q Consensus 58 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~ 134 (676)
....-|..+.+...++-|..+-..-..+.... ..-..+.+.+.|+++ +|..-|-+.+. -+.|. .++.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~-~A~~qYI~tI~---~le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFD-EATDQYIETIG---FLEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHcc---cCChH-----HHHHH
Confidence 45566777788888888888776544222222 223334556788999 99888877763 23333 34445
Q ss_pred HHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHH
Q 005802 135 CVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKT 214 (676)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 214 (676)
+....+...--.+++.+.+.|+..... -+.|+.+|.+.++.++-.++.+......-..-....+..+.+.+-.++|.-+
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla~~dh-ttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLANSDH-TTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccccchh-HHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 555555566667778888887654443 5788999999999999988888766311122245567777777777777766
Q ss_pred HhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 215 FWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMG 251 (676)
Q Consensus 215 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 251 (676)
-.... . +....+.+ +-..+++++|+..+..|.
T Consensus 486 A~k~~-~-he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 486 ATKFK-K-HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHhc-c-CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 65554 1 22223333 345678888888887654
No 242
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.68 E-value=0.065 Score=52.64 Aligned_cols=62 Identities=6% Similarity=-0.032 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcH----HHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDA----VILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
...+..+..+|.+.|++++|+..|++.. ..|+. .+|.++..+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555555555555666666666655544 33332 23555555566666666666666666554
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.59 E-value=0.085 Score=47.93 Aligned_cols=91 Identities=12% Similarity=0.081 Sum_probs=46.7
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCcHHHHHHHHHHHHHhCCHh
Q 005802 505 HCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-----TEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
+.|++..|...|....+.|.-.+- ...+-.|..++...|++++|...|..+. .+.-+..+--+..+....|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 334555555555555543211100 2233345555555555555555554443 1223444555555556666666
Q ss_pred HHHHHHHHHHcccCCCC
Q 005802 579 LAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~~~ 595 (676)
+|...++++.+..|..+
T Consensus 233 ~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 233 EACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHHCCCCH
Confidence 66666666666666544
No 244
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.47 E-value=0.21 Score=46.97 Aligned_cols=123 Identities=16% Similarity=0.121 Sum_probs=65.3
Q ss_pred HHHHhhccCcHHHHHHHHHHchhhcCC--CC--CHHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCcHH-----
Q 005802 499 ILSAFRHCGSVEMGEKYFNSMTADYKI--SP--ETDHYACMIDLYGRANQLEKAIEFMKSIP-------TEEDAV----- 562 (676)
Q Consensus 499 ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~----- 562 (676)
+..++...+.++++++.|+....-..- .| ...++..|...|.+..++++|.-+..++. ...-..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 445555556666666666654321111 11 13456666677777777766655443332 111111
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcc--cCCC----CccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRL--EGNN----KARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
..-.+.-++...|....|.+..+++.++ ...| ......++++|...|+.|.|..-++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1222333566667777777777776665 2222 233456667777777766666655554
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.45 E-value=0.38 Score=39.29 Aligned_cols=115 Identities=17% Similarity=0.082 Sum_probs=60.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCC--CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhc
Q 005802 465 IACYAHHGHEEKAILLFEEMLEKGIKP--DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRA 542 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 542 (676)
.....+.|++++|.+.|+.+..+-... ....-..++.+|.+.|+++.|...+++.++-+.-.|+ .-|.....+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 344456677777777777766541111 1334455666677777777777777776654333333 2344444444433
Q ss_pred CCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 543 NQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 543 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
...+..+.-+-. ..- ..+....|...|+++++..|++.
T Consensus 96 ~~~~~~~~~~~~--~dr-------------D~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGSLQSFFR--SDR-------------DPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhHHhhhcc--ccc-------------CcHHHHHHHHHHHHHHHHCcCCh
Confidence 332222211110 011 11235688888888888899864
No 246
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.30 E-value=2.7 Score=39.87 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=14.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHH
Q 005802 597 RYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
.+-.++.+|...|.-++-...+..
T Consensus 333 ~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 333 LHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHHHHHHHHhccchhHHHHHHHH
Confidence 455677788777766654444433
No 247
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.21 E-value=0.29 Score=38.98 Aligned_cols=90 Identities=9% Similarity=-0.025 Sum_probs=54.6
Q ss_pred CCcHHHHHHHHHHHHHhC---CHhHHHHHHHHHHc-ccCCC-CccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCce
Q 005802 558 EEDAVILGSFLNVCRLNR---NAELAGEAEEKLLR-LEGNN-KARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGC 632 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 632 (676)
.+...+-..+.+++.++. +..+.+.+++.+.+ ..|.. -.....|+-.+.+.|+|+.++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~-------- 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET-------- 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--------
Confidence 344445555666665554 34566667776665 33332 233445666677777777777777776643
Q ss_pred eEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005802 633 SWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYEIAG 673 (676)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (676)
+|.+.|....-+.++++|+|.|+
T Consensus 101 ------------------e~~n~Qa~~Lk~~ied~itkegl 123 (149)
T KOG3364|consen 101 ------------------EPNNRQALELKETIEDKITKEGL 123 (149)
T ss_pred ------------------CCCcHHHHHHHHHHHHHHhhcce
Confidence 55556666666667777777765
No 248
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.18 E-value=0.094 Score=34.45 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005802 598 YVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYEIAG 673 (676)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (676)
...++-++.+.|++++|.+..+.+.+. +|...|.......++.+|.+.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 467888999999999999999999853 89999999999999999999883
No 249
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.11 E-value=0.054 Score=31.76 Aligned_cols=32 Identities=31% Similarity=0.040 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
.|..+..++...|++++|+..++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45555666666666666666666666666653
No 250
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.10 E-value=0.19 Score=42.30 Aligned_cols=71 Identities=14% Similarity=0.241 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHch----hhcCCCCCHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMT----ADYKISPETDH 531 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 531 (676)
+...++..+...|++++|..+++++.... +.|...|..++.+|...|+...|.++|+.+. ++.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445566667777777777777777642 3356677777778888888777777776653 23467776554
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=2.4 Score=39.28 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=100.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCH
Q 005802 466 ACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQL 545 (676)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 545 (676)
......|++.+|..+|....+..-. +...-..+..+|...|+.+.|..++..+-.+ .-.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 3456778899999999888875322 3445566778888999999999999887543 1111122223345666666666
Q ss_pred HHHHHHHHhCCCCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHccc--CCCCccHHHHHHHHHhcCChhHHH
Q 005802 546 EKAIEFMKSIPTEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLE--GNNKARYVQLANVYAAEGNWAEMG 615 (676)
Q Consensus 546 ~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 615 (676)
.+...+-++.-..| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..|..++.-.|.-+.+.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 66666666655344 66677778888889999999988888777663 335667777888887777555433
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.05 E-value=1.4 Score=36.74 Aligned_cols=42 Identities=10% Similarity=0.199 Sum_probs=19.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc
Q 005802 463 VMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRH 505 (676)
Q Consensus 463 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 505 (676)
.++..+...+.......+++.+...+ ..+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444444555555555554443 2333444444444443
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.02 E-value=2.7 Score=38.21 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGI--KPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPET 529 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 529 (676)
.+-.-+..-.+.|++++|...|+.+..+.. +-...+...++.++.+.++++.|...+++....++-.||.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 444445556778999999999999886421 1134566677778888999999999999988877777774
No 254
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.81 E-value=0.29 Score=39.54 Aligned_cols=47 Identities=9% Similarity=0.188 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCcHHHHHHHHHH
Q 005802 524 KISPETDHYACMIDLYGRANQLEKAIEFMKSIP----TEEDAVILGSFLNV 570 (676)
Q Consensus 524 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~ 570 (676)
...|+..+..+++.+|+..|++..|+++++... .+-+..+|..|+.=
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 567888888888888888888888888876654 34456777777763
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.72 E-value=0.057 Score=31.72 Aligned_cols=31 Identities=19% Similarity=0.010 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
+|..++.++...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4556666666667777777777777666664
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.70 E-value=0.3 Score=45.41 Aligned_cols=160 Identities=10% Similarity=-0.011 Sum_probs=116.9
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHH----HHHHHHhhcCC
Q 005802 469 AHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYA----CMIDLYGRANQ 544 (676)
Q Consensus 469 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~ 544 (676)
-..|+..+|...++++.+. .+.|...+...=.+|...|+...-...++++..+ -.|+...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888999999999885 5667778888888999999999999889888753 345543333 44556678999
Q ss_pred HHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC----CccHHHHHHHHHhcCChhHHHHHH
Q 005802 545 LEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN----KARYVQLANVYAAEGNWAEMGRIR 618 (676)
Q Consensus 545 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 618 (676)
+++|++.-++.. .+.|.-...+..-.+.-.+++.++.+...+-...-..+ ..-|-+.+-.+...+.++.|++++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999999887 33455555666667778889999998887766552221 223556666778889999999999
Q ss_pred HHHHhCCCcccCc
Q 005802 619 KQMRGMKGNRFAG 631 (676)
Q Consensus 619 ~~~~~~~~~~~~~ 631 (676)
+.=.-....++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8765544555444
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.68 E-value=0.89 Score=46.03 Aligned_cols=154 Identities=8% Similarity=0.014 Sum_probs=99.2
Q ss_pred CCChHHHHHHHHH-HHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHhcc
Q 005802 3 SLNLKEALICHVQ-AIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISACIKSHDLKQARSLFDS 81 (676)
Q Consensus 3 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 81 (676)
++|++++.+..+. -.-..+| ....+.++..+-+.|.++.|+++... -..-.....+.|+++.|.++..+
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D--------~~~rFeLAl~lg~L~~A~~~a~~ 343 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD--------PDHRFELALQLGNLDIALEIAKE 343 (443)
T ss_dssp TT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHHHHCT-HHHHHHHCCC
T ss_pred cCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC--------hHHHhHHHHhcCCHHHHHHHHHh
Confidence 4566666655541 1111222 45578888888888999988887432 24556677888999999888877
Q ss_pred CCCCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCc
Q 005802 82 SPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGF 161 (676)
Q Consensus 82 ~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (676)
.. +...|..|.....++|+.+ -|.+.|++... +..|+=.+...|+.+...++.+.....|
T Consensus 344 ~~--~~~~W~~Lg~~AL~~g~~~-lAe~c~~k~~d-----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------ 403 (443)
T PF04053_consen 344 LD--DPEKWKQLGDEALRQGNIE-LAEECYQKAKD-----------FSGLLLLYSSTGDREKLSKLAKIAEERG------ 403 (443)
T ss_dssp CS--THHHHHHHHHHHHHTTBHH-HHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------
T ss_pred cC--cHHHHHHHHHHHHHcCCHH-HHHHHHHhhcC-----------ccccHHHHHHhCCHHHHHHHHHHHHHcc------
Confidence 65 5568999999999999999 99999888764 5566667777888888777777766652
Q ss_pred hhhHHHHHhhhccchHHHHHhhhhc
Q 005802 162 AVSSLIDMYSKCRCYEEACRVFEGC 186 (676)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~~ 186 (676)
-++....++.-.|++++..+++.+.
T Consensus 404 ~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2555556666667777666666543
No 258
>PRK09687 putative lyase; Provisional
Probab=94.64 E-value=4.1 Score=38.58 Aligned_cols=238 Identities=11% Similarity=-0.026 Sum_probs=113.2
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCCCh---hHHHHHHHHhHhccCCCCCChhh
Q 005802 51 MPERNVFSWNTIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYE---ADALKLFIEMQSADEHIRMDEFT 127 (676)
Q Consensus 51 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~a~~~~~~m~~~~~~~~p~~~~ 127 (676)
+..+|..+....+.++...|..+-...+..-...+|...-..-+.++..-|... ..+...+..+.. -.|+...
T Consensus 32 L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~----~D~d~~V 107 (280)
T PRK09687 32 LDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL----EDKSACV 107 (280)
T ss_pred HhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh----cCCCHHH
Confidence 344555555566666666554333222222223455555555555666655432 145666655532 2345555
Q ss_pred HHHHHHHHHccCCcHH--HHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhc
Q 005802 128 VTSTLNLCVKLLNVGF--GRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCRE 205 (676)
Q Consensus 128 ~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (676)
-...+.+++..+.... -....+.+...-..++..+-...+.++.+.|+ +++...+-.+..+++..+...-+.++++.
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 5555555554432111 11222222222222344455555556655554 34555554444455555555555555554
Q ss_pred C-ChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHH
Q 005802 206 G-EMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSW 284 (676)
Q Consensus 206 g-~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 284 (676)
+ ..+.+...+..+...++..+-...+.++.+.|+ ..|+..+-...+.+. ....++.++...|+. .+...+..
T Consensus 187 ~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~ 259 (280)
T PRK09687 187 KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDT 259 (280)
T ss_pred CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHH
Confidence 2 133344444333335555566666666666665 345555555444322 123455666666664 45555555
Q ss_pred HHHhCCCCchhHHHHHHH
Q 005802 285 VLKNGLISNPFVSSGIVD 302 (676)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~ 302 (676)
+.+.. +|..+-...+.
T Consensus 260 l~~~~--~d~~v~~~a~~ 275 (280)
T PRK09687 260 LLYKF--DDNEIITKAID 275 (280)
T ss_pred HHhhC--CChhHHHHHHH
Confidence 55432 34444443333
No 259
>PRK15331 chaperone protein SicA; Provisional
Probab=94.55 E-value=0.57 Score=39.27 Aligned_cols=85 Identities=16% Similarity=0.083 Sum_probs=66.5
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHh
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
-+...|++++|..+|+-+..- .| +..-+..|..++-..+++++|+..|.... ...|+...-....++...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~---d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY---DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 345679999999999988642 33 35667778888888899999999987655 4456666666778888999999
Q ss_pred HHHHHHHHHHc
Q 005802 579 LAGEAEEKLLR 589 (676)
Q Consensus 579 ~a~~~~~~~~~ 589 (676)
.|+..|+.+++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999999887
No 260
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.41 E-value=8.8 Score=41.39 Aligned_cols=84 Identities=11% Similarity=-0.020 Sum_probs=46.8
Q ss_pred cCChhHHHHHHHHHHhCC---CCCcHhHHHHHHHHHh--CCCChHHHHHHHHHHHHhCC---------CCchhHHHHHHH
Q 005802 237 NGDAEEGLKLFVRMGENG---VRWNEHTFASALSACC--GLRNVKCAKEIHSWVLKNGL---------ISNPFVSSGIVD 302 (676)
Q Consensus 237 ~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~ 302 (676)
.+++..|++.++.....- ..|-...+..++.+.. +.+..+.+.+.++.+..... .|...++..+++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 368888888887775532 2344445555555543 45556666666666633221 234445555555
Q ss_pred H--HHhcCChHHHHHHHHhc
Q 005802 303 V--YCKCENMNYAESMLLLK 320 (676)
Q Consensus 303 ~--~~~~g~~~~a~~~~~~~ 320 (676)
. +...|+++.+...++.+
T Consensus 232 l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 4 34466666666555443
No 261
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.40 E-value=0.39 Score=43.60 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=75.2
Q ss_pred HHHHhhcC--CCCcchHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccC------------
Q 005802 447 EIIFQNFI--ERDLVLYNVMIACYAHH-----GHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCG------------ 507 (676)
Q Consensus 447 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g------------ 507 (676)
+..|.... +.|-.+|.+.+..+... +.++-....++.|.+-|+.-|..+|+.|++.+=+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 55667777777777543 456666677889999999999999999999876532
Q ss_pred ----cHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCH
Q 005802 508 ----SVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQL 545 (676)
Q Consensus 508 ----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 545 (676)
+-+-++.++++| +.+|+.||..+-..|+.++++.+-.
T Consensus 134 HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhcccccc
Confidence 334578999999 5569999999999999999998854
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.40 E-value=4 Score=37.38 Aligned_cols=197 Identities=19% Similarity=0.155 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHhhcChhHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCc-chHHHHHH-H
Q 005802 393 LILVILLGACALQAALHPGKEIHAYILRM-GVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--RDL-VLYNVMIA-C 467 (676)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~-~ 467 (676)
..+......+...+....+...+...... ........+......+...+++..+...+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33444444444555555555444444332 2233444555555666666667777777776653 221 22333333 6
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCC----CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhc
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKP----DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRA 542 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 542 (676)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 7888999999999998865 333 2333444444466788999999999988743 222 367788888888999
Q ss_pred CCHHHHHHHHHhCC-CCCc-HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 543 NQLEKAIEFMKSIP-TEED-AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 543 g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
+++++|...+.... ..|+ ...+......+...+..+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999998887 3343 455555556556777899999999999998886
No 263
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.26 E-value=4 Score=39.94 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=21.8
Q ss_pred CCHhHHHHHHHHhhccCcHHHHHHHHHHchh
Q 005802 491 PDAVTFVAILSAFRHCGSVEMGEKYFNSMTA 521 (676)
Q Consensus 491 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 521 (676)
.+-..+..++.++.-.|++++|.+..+.|..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 3455566677777777788888887777763
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.21 E-value=2.8 Score=34.86 Aligned_cols=22 Identities=5% Similarity=-0.028 Sum_probs=10.5
Q ss_pred HHHHHhhccCcHHHHHHHHHHc
Q 005802 498 AILSAFRHCGSVEMGEKYFNSM 519 (676)
Q Consensus 498 ~ll~~~~~~g~~~~a~~~~~~~ 519 (676)
.++..|.+.+.++++..++.++
T Consensus 74 ~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 74 KVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHcCcHHHHHHHHHhh
Confidence 3444444445555555554444
No 265
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.17 E-value=5.2 Score=39.73 Aligned_cols=149 Identities=9% Similarity=-0.038 Sum_probs=78.4
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC---CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC--HHH
Q 005802 457 DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP---DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE--TDH 531 (676)
Q Consensus 457 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 531 (676)
...+|..++..+.+.|+++.|...+.++...+..+ .......-....-..|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 34467777888888888888888888877643211 2222333344455667778888877777652 11111 111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HHhCCCCCcHHHHHHHHHHHHHh------CCHhHHHHHHHHHHcccCCCCccHHHHHHH
Q 005802 532 YACMIDLYGRANQLEKAIEF-MKSIPTEEDAVILGSFLNVCRLN------RNAELAGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...|.++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000111222333333333 788999999999999999988888888877
Q ss_pred HHhc
Q 005802 605 YAAE 608 (676)
Q Consensus 605 ~~~~ 608 (676)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6553
No 266
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.07 E-value=4.3 Score=36.44 Aligned_cols=86 Identities=12% Similarity=0.115 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-------CCCcH-HHHHHHHHHHHHhCCHhHHHHHHHHHHcc----cCCCCccHH
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP-------TEEDA-VILGSFLNVCRLNRNAELAGEAEEKLLRL----EGNNKARYV 599 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~ 599 (676)
+..+...|.+...+++|-..+.+-. .-|+. ..+...+-.+....|+..|+..++...+. .|++..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 3344455555556655554444332 11111 12333333444555666776666665444 344444555
Q ss_pred HHHHHHHhcCChhHHHHHH
Q 005802 600 QLANVYAAEGNWAEMGRIR 618 (676)
Q Consensus 600 ~l~~~~~~~g~~~~A~~~~ 618 (676)
.|+..| ..|+.+++.+++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 555444 345556555443
No 267
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.03 E-value=0.45 Score=43.21 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=72.5
Q ss_pred CCCeeeHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCC----------------ChHHHH
Q 005802 221 LNDAVSWNTLISGYVQN-----GDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLR----------------NVKCAK 279 (676)
Q Consensus 221 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------------~~~~a~ 279 (676)
..|-.+|-..+..|... +..+=....++.|.+.|+.-|..+|..||+.+-+.. .-+.+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44556666666666433 445556667788999999999999999998876533 235689
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCh-HHHHHHH
Q 005802 280 EIHSWVLKNGLISNPFVSSGIVDVYCKCENM-NYAESML 317 (676)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~ 317 (676)
+++++|..+|+.||..+-..+++++.+.+-. .+..+++
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRML 182 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHH
Confidence 9999999999999999999999999987763 3334333
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.95 E-value=2 Score=40.25 Aligned_cols=155 Identities=15% Similarity=0.098 Sum_probs=108.7
Q ss_pred HhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH----HHHhhccCcHH
Q 005802 438 SKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAI----LSAFRHCGSVE 510 (676)
Q Consensus 438 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l----l~~~~~~g~~~ 510 (676)
...|++.+|-..++++. +.|..++...=.+|...|+.+.-...++++... ..||...|..+ .-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34677778877777776 347778888888999999999999999998865 45666555433 33456789999
Q ss_pred HHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCc------HHHHHHHHHHHHHhCCHhHHHHH
Q 005802 511 MGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPTEED------AVILGSFLNVCRLNRNAELAGEA 583 (676)
Q Consensus 511 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~ 583 (676)
+|.+.-++.. .+.|. .-...++...+.-.|+..++.+++.+-...-+ ...|-...-.+...+.++.|+++
T Consensus 193 dAEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999988876 44443 55556778888889999999999988761111 11122222344566899999999
Q ss_pred HHHHH--cccCCCCc
Q 005802 584 EEKLL--RLEGNNKA 596 (676)
Q Consensus 584 ~~~~~--~~~p~~~~ 596 (676)
|.+-+ +...+|+.
T Consensus 270 yD~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHHhhccchh
Confidence 98644 23555553
No 269
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.86 E-value=0.2 Score=46.68 Aligned_cols=90 Identities=14% Similarity=0.055 Sum_probs=43.3
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHh
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
-|.+.|.+++|+..|..-. .+.| ++.++..-..+|.+...+..|..-...+. ...-...|..-+.+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3556666666666665554 3344 45555555556666666555554444333 0001111222222222334555
Q ss_pred HHHHHHHHHHcccCCC
Q 005802 579 LAGEAEEKLLRLEGNN 594 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~~ 594 (676)
+|.+-++.++++.|.+
T Consensus 183 EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHhHHHHHhhCccc
Confidence 5555566666665553
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.81 E-value=5.1 Score=36.46 Aligned_cols=180 Identities=14% Similarity=0.057 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC------CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFIER------DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAIL 500 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 500 (676)
...|+. +..-.+.|++++|.+.|+.+... ...+.-.++-++.+.+++++|+..+++....-......-|...|
T Consensus 35 ~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 334443 44456789999999999998733 22345556777889999999999999988843222233455555
Q ss_pred HHhhc-------cCcHH---HHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 005802 501 SAFRH-------CGSVE---MGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNV 570 (676)
Q Consensus 501 ~~~~~-------~g~~~---~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 570 (676)
.+++. ..|.. .|..-|+.+..++ ||.. -...|..-+..+. ..-...=..+.+-
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~-d~LA~~Em~Iary 176 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN-DALAGHEMAIARY 176 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 55442 12333 3333344444332 3311 1111111111110 0000011235567
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCCc---cHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNKA---RYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
|.+.|.+..|..-++++++..|+.+. .+..|..+|...|..++|.+.-+-+...
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 88999999999999999998666544 4566778899999999999887766543
No 271
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.78 E-value=0.93 Score=36.06 Aligned_cols=139 Identities=12% Similarity=0.103 Sum_probs=75.6
Q ss_pred HccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHH
Q 005802 136 VKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTF 215 (676)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 215 (676)
.-.|.++++.++.....++. +..-++=+|.-....-+-+...+.++.+.+-.|.. .+|++......+
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis----------~C~NlKrVi~C~ 79 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS----------KCGNLKRVIECY 79 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG----------G-S-THHHHHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch----------hhcchHHHHHHH
Confidence 34566777777777666651 11234444444444455555555555554422221 233444444433
Q ss_pred hhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 005802 216 WRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGL 290 (676)
Q Consensus 216 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 290 (676)
-.+. .+....+..+..+...|+-+.-.+++.++.. +-.|++.....+..+|.+.|+..++.+++.++.+.|+
T Consensus 80 ~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 80 AKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3332 2334456667778888888888888888765 3457777777888888888888888888888888875
No 272
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.67 E-value=6.6 Score=37.31 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEK 487 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 487 (676)
++..-+..+.+.++.+.+.+.+.+|+..
T Consensus 123 ~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 123 VFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3333444444455666666666666653
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.62 E-value=0.12 Score=30.92 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 598 YVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
+..|+.+|.+.|+|++|++++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6778899999999999999988854
No 274
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.58 E-value=1.9 Score=43.81 Aligned_cols=131 Identities=16% Similarity=0.097 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHh
Q 005802 125 EFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCR 204 (676)
Q Consensus 125 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (676)
..-.+.+++.+-+.|..+.|+++...-..+ .+...+.|+++.|.++.++.. +...|..|.+...+
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIALEIAKELD---DPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHH
Confidence 344667777777777777777665543322 344556677777777766533 45577777777777
Q ss_pred cCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHH
Q 005802 205 EGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIH 282 (676)
Q Consensus 205 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 282 (676)
.|+++-|.+.|.+.. -|..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..+++
T Consensus 360 ~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 360 QGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp TTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred cCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776665 356666666666766665555555554442 333334444445555554444
No 275
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.57 E-value=1.3 Score=37.18 Aligned_cols=128 Identities=10% Similarity=0.105 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHH-HHHHH--
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV-TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETD-HYACM-- 535 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l-- 535 (676)
.|.+-++ +++.+..++|+.-|..+.+.|...=+. ..........+.|+...|...|+++-.. ...|... -...|
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlra 138 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHH
Confidence 3444333 356778888888888888766543221 1112223456778888888888888544 3333321 11122
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCC--C-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHc
Q 005802 536 IDLYGRANQLEKAIEFMKSIPTE--E-DAVILGSFLNVCRLNRNAELAGEAEEKLLR 589 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 589 (676)
..++...|.+++....++.+..+ | -...-..|.-+-.+.|++..|...|..+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 23455677787777777766522 2 223445566667777888888888777765
No 276
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.51 E-value=0.11 Score=32.72 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=29.0
Q ss_pred CccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 595 KARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
|..+..|+.+|.+.|++++|.+.++++.+..++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 356889999999999999999999999987554
No 277
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.19 E-value=2.9 Score=43.14 Aligned_cols=157 Identities=16% Similarity=0.175 Sum_probs=88.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC-Cc---------chHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHH
Q 005802 432 TLVDMYSKCGNMTYAEIIFQNFIER-DL---------VLYNVMIACYAH----HGHEEKAILLFEEMLEKGIKPDAVTFV 497 (676)
Q Consensus 432 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~---------~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~ 497 (676)
.++...+=.|+-+.+.+.+....+. +. ..|+..+..++. ....+.|.++++.+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 3444444455555555555544321 11 134444444433 34577788888888774 56655554
Q ss_pred HHH-HHhhccCcHHHHHHHHHHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHH-
Q 005802 498 AIL-SAFRHCGSVEMGEKYFNSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVC- 571 (676)
Q Consensus 498 ~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~- 571 (676)
..- +.+...|++++|.+.|+.....-.--|. ...+--+...+.-.+++++|.+.|..+. ..-...+|..+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 333 4556678888888888865421011112 3344456677777888888888888877 223444444444433
Q ss_pred HHhCCH-------hHHHHHHHHHHcc
Q 005802 572 RLNRNA-------ELAGEAEEKLLRL 590 (676)
Q Consensus 572 ~~~~~~-------~~a~~~~~~~~~~ 590 (676)
...++. ++|..+++++-..
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHH
Confidence 445555 6777777766544
No 278
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.18 E-value=17 Score=40.67 Aligned_cols=143 Identities=12% Similarity=0.113 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcH
Q 005802 430 ISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSV 509 (676)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 509 (676)
+.-.++.--+.|.+.+|..++..-.+.-...|.+...-+...+.+++|.-.|+..-+ ....+.+|..+|+|
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 333444444555666666555443333334555556666677788888777765422 23456778888999
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 005802 510 EMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLL 588 (676)
Q Consensus 510 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 588 (676)
.+|+.+..++.. +-.--..+-..|+.-+..+++.-+|-++..+....|... +..+++...+++|.++.....
T Consensus 982 r~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a-----v~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 982 REALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA-----VALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-----HHHHhhHhHHHHHHHHHHhcc
Confidence 999888887742 111112223567777888888888888888877444332 223445556666666665554
No 279
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.06 E-value=5 Score=34.14 Aligned_cols=58 Identities=9% Similarity=0.074 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHH
Q 005802 358 VWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILR 420 (676)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 420 (676)
.+..++..+...|++-+|+++.+.. .. .+......++.+....++...-..+++...+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~-~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQY-HK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHc-CC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666777788888888777653 11 1111223445555555555544445544444
No 280
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.98 E-value=8.5 Score=36.57 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHH---HHcCChhHHHHHHHHHHHCCCCCCH
Q 005802 428 KLISTLVDMYSKCGNMTYAEIIFQNFIER---DLVLYNVMIACY---AHHGHEEKAILLFEEMLEKGIKPDA 493 (676)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~---~~~~~~~~A~~~~~~m~~~g~~p~~ 493 (676)
.++..-+..+.+.++.+.+.+.+..|... ....+...+..+ .. .....|...+..+....+.|..
T Consensus 122 ~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 122 EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 33333444444455666666666555421 122333333333 22 2345566666666655455544
No 281
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.66 E-value=5.4 Score=35.06 Aligned_cols=162 Identities=14% Similarity=0.108 Sum_probs=87.1
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 005802 458 LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMID 537 (676)
Q Consensus 458 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 537 (676)
+..||-|.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++.-|.+-+-..-+...-.|=...|-.++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3467777777778888888888888877633111111222222 234567888777766655433122222222222221
Q ss_pred HHhhcCCHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC-------CccHHHHHHHHHhcC
Q 005802 538 LYGRANQLEKAIEFM-KSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN-------KARYVQLANVYAAEG 609 (676)
Q Consensus 538 ~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 609 (676)
+.-++.+|..-+ ++.. ..+..-|...+-.+.-..- ..+.+++++.+...++ ..+|+-|+.-|...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgki--S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKI--SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhc--cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 233556665443 3333 3444555444433322111 1122333333332222 347888999999999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 005802 610 NWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 610 ~~~~A~~~~~~~~~~~~ 626 (676)
+.++|..+++.....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999998876544
No 282
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.66 E-value=0.33 Score=38.32 Aligned_cols=57 Identities=14% Similarity=-0.021 Sum_probs=53.1
Q ss_pred HHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 569 NVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
-+....|+.+.|++.|-+++.+.|..++.|+.-+.++.-+|+.++|++-+++..+..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 367889999999999999999999999999999999999999999999999988753
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.64 E-value=5.8 Score=33.77 Aligned_cols=131 Identities=10% Similarity=0.066 Sum_probs=85.9
Q ss_pred HHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--ChHHHHHHHHhcC
Q 005802 244 LKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCE--NMNYAESMLLLKG 321 (676)
Q Consensus 244 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~ 321 (676)
+++++.+.+.|++|+...+..+++.+.+.|.+... ..++..++-+|.......+-.+.... -.+.|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 46667777788999999999999999998886644 44455566666555544443333221 1445556665554
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 005802 322 VRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEF 382 (676)
Q Consensus 322 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 382 (676)
..+..++..+...|++-+|.++.+....-+......++.+-.+.++..--..+|+-.
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 245667778889999999999998875554455566677776776655544444443
No 284
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.60 E-value=0.13 Score=30.11 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 596 ARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
..+..++.+|...|++++|++.+++..+..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4688999999999999999999999876543
No 285
>PRK09687 putative lyase; Provisional
Probab=92.46 E-value=10 Score=36.03 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=14.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHH
Q 005802 534 CMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLN 569 (676)
Q Consensus 534 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~ 569 (676)
..+.+++..|.. +|+..+..+. ..||..+....+.
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHH
Confidence 344444444443 3444444443 2334444333333
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.30 E-value=4.8 Score=33.77 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=39.2
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHH
Q 005802 504 RHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVC 571 (676)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~ 571 (676)
...++.+++..++..+. -+.|. ...-..-...+.+.|++.+|+.+|+++. ..|....-..|+..|
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 45667778888877775 45566 2222233555677888888888888876 333333334444434
No 287
>PRK10941 hypothetical protein; Provisional
Probab=92.21 E-value=0.97 Score=42.16 Aligned_cols=82 Identities=15% Similarity=0.058 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEE
Q 005802 564 LGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHI 643 (676)
Q Consensus 564 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (676)
.+.+-.+|.+.++++.|.++.+.++...|+++.-+...|-+|.+.|.+..|..-++...+.-++
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~---------------- 247 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE---------------- 247 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC----------------
Confidence 3455567889999999999999999999999999999999999999999999999888765442
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHH
Q 005802 644 FTVGDVSHPKTNAIYSVLAIFTGEL 668 (676)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (676)
+|.+..|...+..|..+.
T Consensus 248 -------dp~a~~ik~ql~~l~~~~ 265 (269)
T PRK10941 248 -------DPISEMIRAQIHSIEQKQ 265 (269)
T ss_pred -------chhHHHHHHHHHHHhhcC
Confidence 677777777777776553
No 288
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.19 E-value=3.7 Score=36.79 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhCCC-------CCCe-eeHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCcHhHHH
Q 005802 195 KNAMVAACCREGEMEMALKTFWRQPE-------LNDA-VSWNTLISGYVQNGDAEEGLKLFVRMGENG---VRWNEHTFA 263 (676)
Q Consensus 195 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~ 263 (676)
+...-+.+.+...+++|-..|.+-.. .++. ..|-..|-.+.-..++..|...++.--+.+ -.-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 34444555666666665444433221 1111 124444555566667777777777644432 122445666
Q ss_pred HHHHHHhCCCChHHHHHHH
Q 005802 264 SALSACCGLRNVKCAKEIH 282 (676)
Q Consensus 264 ~ll~~~~~~~~~~~a~~~~ 282 (676)
.||.+| ..|+.+.+.+++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 666665 456666665554
No 289
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.12 E-value=0.29 Score=28.56 Aligned_cols=31 Identities=23% Similarity=0.042 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3455556666667777777777776666663
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.11 E-value=0.9 Score=37.21 Aligned_cols=69 Identities=16% Similarity=0.039 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHhCC-CCCcHHHHH-HHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCC
Q 005802 542 ANQLEKAIEFMKSIP-TEEDAVILG-SFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~-~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 610 (676)
.++.+++..++..+. ..|+..-.. .-.+.+...|++.+|.++++.+.+..+..+-.-..++.++...|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 455555555555444 233222221 222344455555555555555554444333333344444444444
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.07 E-value=0.27 Score=29.29 Aligned_cols=28 Identities=29% Similarity=0.207 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
+|..+..+|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777888888888888888885544
No 292
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.03 E-value=7.6 Score=33.69 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHH--HHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHH-----HHHHHHhhcCCHHHH
Q 005802 476 KAILLFEEMLEKGIKPDAVTFVA--ILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYA-----CMIDLYGRANQLEKA 548 (676)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A 548 (676)
+.....+++....-+....++.. +...+...|++++|...++..... |.-..+. .|.+.....|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 55555666665422222222222 334567788889888888876532 2222222 355667788889999
Q ss_pred HHHHHhCCCCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 549 IEFMKSIPTEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 549 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
+..++....+. .+.....-+.++...|+.++|...|+++++.+++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 98888776221 2223444455788888888888888888887643
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.95 E-value=0.84 Score=38.14 Aligned_cols=74 Identities=12% Similarity=-0.102 Sum_probs=49.5
Q ss_pred HhhcCCHHHHHHHHHhCC-CCCcHHHHH-HHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChh
Q 005802 539 YGRANQLEKAIEFMKSIP-TEEDAVILG-SFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWA 612 (676)
Q Consensus 539 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 612 (676)
-.+.++.+++..++..+. ..|...... .-.+.+...|++.+|+.+++.+.+..|..+..-..++.++...|+.+
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 346677888888877776 455444333 33446678888888888888877777766666666666666666654
No 294
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.92 E-value=6 Score=42.48 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=42.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHh---c
Q 005802 232 SGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNG-LISNPFVSSGIVDVYCK---C 307 (676)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---~ 307 (676)
..+.-.|+++.|++++-. ..+...+.+.+.+.+..+.-.+-.+... ..+.... -.|.+.-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445568999999999877 3345567788888777665433222221 2222111 01122457778888877 3
Q ss_pred CChHHHHHHHHhcCC
Q 005802 308 ENMNYAESMLLLKGV 322 (676)
Q Consensus 308 g~~~~a~~~~~~~~~ 322 (676)
.+...|.+.+-.+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 567778777766554
No 295
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.82 E-value=20 Score=38.17 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=54.4
Q ss_pred HHHhhhccchHHHHHhhhhcCCC-C---chhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhH
Q 005802 167 IDMYSKCRCYEEACRVFEGCTEE-V---NLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEE 242 (676)
Q Consensus 167 i~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 242 (676)
|+-+.+.+.+++|+.+.+..... + ....+..+++.+...|++++|-...-.|- ..+..-|..-+..+...++...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~-gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML-GNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh-cchHHHHHHHHHHhccccccch
Confidence 44566667777777777654441 1 23455667777777777777766665555 4445555555555555554433
Q ss_pred HHHHHHHHHhCCCCCcHhHHHHHHHHHhC
Q 005802 243 GLKLFVRMGENGVRWNEHTFASALSACCG 271 (676)
Q Consensus 243 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 271 (676)
...++ ....-..+...|..+|..+..
T Consensus 442 Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 442 IAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhccC---CCCCcccCchHHHHHHHHHHH
Confidence 22221 111111244456666655544
No 296
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.66 E-value=3.6 Score=41.19 Aligned_cols=58 Identities=14% Similarity=0.003 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHcccCC--CCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 565 GSFLNVCRLNRNAELAGEAEEKLLRLEGN--NKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 565 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
..+..++.+.|+.++|++.++++.+..|. +..+...|+.++...+.+.++..++.+--
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34444555555556666666555555443 23345555555555666666655555543
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.65 E-value=0.19 Score=29.36 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 596 ARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
..|..++.+|...|++++|+..+++..+..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4688999999999999999999999887544
No 298
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.45 E-value=4.3 Score=34.26 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=77.3
Q ss_pred HhcCCHHHHHHHHhhcCCCCcchHHHHH-----HHHHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHHH--HHhhccCcH
Q 005802 438 SKCGNMTYAEIIFQNFIERDLVLYNVMI-----ACYAHHGHEEKAILLFEEMLEKGIKPDAV-TFVAIL--SAFRHCGSV 509 (676)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll--~~~~~~g~~ 509 (676)
.+.+..++|+.-|..+.+.+...|..|. ......|+...|...|++.-...-.|-.. -...|- ..+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3456667777777777666555555443 33567788888888888887654444332 112222 235678888
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 510 EMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 510 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
++.....+-+... +-+.....-..|.-+-.+.|++.+|.++|..+.
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 8888888877543 333335555677777788999999999988776
No 299
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.26 E-value=20 Score=37.01 Aligned_cols=96 Identities=15% Similarity=0.052 Sum_probs=54.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHhccCCC--CCcc-cHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHH
Q 005802 55 NVFSWNTIISACIKSHDLKQARSLFDSSPH--KDLV-TYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTST 131 (676)
Q Consensus 55 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l 131 (676)
+-..|+.+|.--....+++.++.+++.+.. |... -|.-....=.+.|... .+..+|++.. .+++.+...|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~-~s~~Vfergv---~aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAE-NSVKVFERGV---QAIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHH-HHHHHHHHHH---HhhhhHHHHHHHH
Confidence 445666666555555555666666666552 3332 1333334444566677 7888888877 3455566666555
Q ss_pred HHHHH-ccCCcHHHHHHHHHHHHh
Q 005802 132 LNLCV-KLLNVGFGRQLHAFMVKT 154 (676)
Q Consensus 132 l~~~~-~~~~~~~a~~~~~~~~~~ 154 (676)
+..+. ..|+.+.....|+..+..
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~ 143 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSY 143 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHh
Confidence 55443 455666666666666554
No 300
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.95 E-value=12 Score=34.06 Aligned_cols=238 Identities=12% Similarity=0.144 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc--CC--CCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHc-----CCCCChh
Q 005802 358 VWTALFSGYVKAQNCEALFDLLSEFVTK--EG--VVTDALILVILLGACALQAALHPGKEIHAYILRM-----GVQMDKK 428 (676)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 428 (676)
+...++....+.+++++.+..|.+|+.- .. -.-+..+.+.++.-.+...+.+....+++.-.+. +-..-..
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 4445666777777777777777766311 11 1223445666666655555555555554432221 1122233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCC---------------CcchHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCCC
Q 005802 429 LISTLVDMYSKCGNMTYAEIIFQNFIER---------------DLVLYNVMIACYAHHGHEEKAILLFEEMLE-KGIKPD 492 (676)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~g~~p~ 492 (676)
+-+.|...|...|++.+..+++.++... -...|..=|+.|...++-..-..++++... ..--|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 4456777788888888887777766311 123577778889888888888888888765 223455
Q ss_pred HhHHHHHHHHh-----hccCcHHHHHHHHHHchhhcCC--CCCH-H--HHHHHHHHHhhcC----CHHHHHHHHHhCCCC
Q 005802 493 AVTFVAILSAF-----RHCGSVEMGEKYFNSMTADYKI--SPET-D--HYACMIDLYGRAN----QLEKAIEFMKSIPTE 558 (676)
Q Consensus 493 ~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~--~p~~-~--~~~~l~~~~~~~g----~~~~A~~~~~~~~~~ 558 (676)
+.... +++-| .+.|.+++|..-|=+..+.+.- .|.. . -|..|...+.+.| +..+|. -....
T Consensus 227 PlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNd 301 (440)
T KOG1464|consen 227 PLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKND 301 (440)
T ss_pred hHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCC
Confidence 54443 34433 4578888875433333232221 2332 2 2455666666665 222221 11134
Q ss_pred CcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHH
Q 005802 559 EDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQL 601 (676)
Q Consensus 559 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 601 (676)
|.......++.+|.. ++..+-+++++.-....-++|.+..++
T Consensus 302 PEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~DpFIReh~ 343 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQN-NDIIEFERILKSNRSNIMDDPFIREHI 343 (440)
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHhhhccccccHHHHHHH
Confidence 455566777777654 455555555554444333444444333
No 301
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.65 E-value=21 Score=36.12 Aligned_cols=17 Identities=18% Similarity=0.065 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcccCCCC
Q 005802 579 LAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~~~ 595 (676)
.|.+.+.++.+.+|.-+
T Consensus 364 ~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 46677788887777654
No 302
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.17 E-value=0.7 Score=38.69 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=23.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHH
Q 005802 231 ISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIH 282 (676)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 282 (676)
|..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 4444444455555555555554433333444444455555444444444443
No 303
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.02 E-value=8.3 Score=36.79 Aligned_cols=100 Identities=13% Similarity=0.163 Sum_probs=56.8
Q ss_pred HHHHHHHHhhcCC-------CCcchHHHHHHHHHHcCC----hhHHHHHHHHHHHCCCCCCH--hHHHHHHHHhhccCc-
Q 005802 443 MTYAEIIFQNFIE-------RDLVLYNVMIACYAHHGH----EEKAILLFEEMLEKGIKPDA--VTFVAILSAFRHCGS- 508 (676)
Q Consensus 443 ~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~----~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~- 508 (676)
..+|..+|+.|.+ ++-.++..++.. ..++ .+.+..+|+.+.+.|+..+. .....++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3445566666642 233344444433 2222 45667778888887877653 334444433332222
Q ss_pred -HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCH
Q 005802 509 -VEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQL 545 (676)
Q Consensus 509 -~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 545 (676)
..++.++++.+.+. ++++....|..+.-.-.-.+..
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHHHHhcCCch
Confidence 45788888888776 8888877777665544333333
No 304
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.98 E-value=0.63 Score=26.77 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 599 VQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
..++.+|.+.|++++|.+.++++.+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444444445555555555544443
No 305
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.87 E-value=4.2 Score=35.22 Aligned_cols=100 Identities=14% Similarity=0.054 Sum_probs=59.1
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhC
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPE-----TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNR 575 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~ 575 (676)
+...|++++|..-|...+.. ++|. ...|..-..++.+.+.++.|++-..+.. ..| ....+..-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 44566667666666666532 1111 2234444556667777777777666665 222 2222223334677778
Q ss_pred CHhHHHHHHHHHHcccCCCCccHHHHHHH
Q 005802 576 NAELAGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 576 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
.++.|+.-|+++.+.+|.....-...+.+
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 88999999999998888765444444433
No 306
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.77 E-value=22 Score=35.16 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=39.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------CcchHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFIER-------DLVLYNVMIACYAHHGHEEKAILLFEEMLE 486 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 486 (676)
...++..+...+.+.|.++.|...+..+... .+.....-+..+-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445666677777777777777777666532 233444455666677888888887777766
No 307
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.67 E-value=0.31 Score=40.82 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=54.2
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHhccC
Q 005802 3 SLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISACIKSHDLKQARSLFDSS 82 (676)
Q Consensus 3 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 82 (676)
++.+......++.+...+...++...+.++..|++.++.+...++++.... .-...++..+.+.|.+++|.-++..+
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 20 RNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAVYLYSKL 96 (143)
T ss_dssp TT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHHHHHHHc
Confidence 456777778888888877777899999999999999888999998884433 33344555555555555555555544
Q ss_pred C
Q 005802 83 P 83 (676)
Q Consensus 83 ~ 83 (676)
.
T Consensus 97 ~ 97 (143)
T PF00637_consen 97 G 97 (143)
T ss_dssp T
T ss_pred c
Confidence 3
No 308
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.64 E-value=0.35 Score=27.87 Aligned_cols=31 Identities=13% Similarity=-0.016 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 564 LGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 564 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
+-.+..++...|++++|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4456778889999999999999999999974
No 309
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.34 E-value=26 Score=35.39 Aligned_cols=177 Identities=15% Similarity=0.151 Sum_probs=93.7
Q ss_pred CCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHH
Q 005802 388 VVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIER---DLVLYNVM 464 (676)
Q Consensus 388 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 464 (676)
...|.....+++..+.......-.+.+-.++...| -+...+..++.+|... ..+.-..+|+++.+- |++.-..|
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Confidence 34455555666666666555555555666665544 3444555666666655 445555555544432 33333334
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCC------HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 005802 465 IACYAHHGHEEKAILLFEEMLEKGIKPD------AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDL 538 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 538 (676)
...|-+ ++.+.+...|.+...+ +-|. ...|..+... -..+.+....+...+..+.|...-...+..+-.-
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 444443 6666666666666543 2221 1233333321 1345666666666665554544445555556666
Q ss_pred HhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHH
Q 005802 539 YGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVC 571 (676)
Q Consensus 539 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 571 (676)
|....++++|++++..+. ...|......++..+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 777777777777777665 333444444444433
No 310
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.19 E-value=9.3 Score=33.25 Aligned_cols=97 Identities=11% Similarity=0.090 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHH--HH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA--VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYA--CM 535 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~--~l 535 (676)
.+..+..-|++.|+.+.|++.|.++.+....|.. ..+..+++.....+++..+...+.+.........+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4455666666677777777777776665433332 2344555666666677666666665533211111111111 11
Q ss_pred H--HHHhhcCCHHHHHHHHHhCC
Q 005802 536 I--DLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 536 ~--~~~~~~g~~~~A~~~~~~~~ 556 (676)
. -.+...+++.+|-+.|-+..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 1 12334667777777776665
No 311
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.05 E-value=37 Score=36.65 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=25.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCC
Q 005802 229 TLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGL 272 (676)
Q Consensus 229 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 272 (676)
.+|-.|.+.|++++|.++..+... +.......|...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 345566777777777777754443 3444556666667766654
No 312
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.82 E-value=0.52 Score=25.54 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHH
Q 005802 596 ARYVQLANVYAAEGNWAEMGRIRK 619 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~ 619 (676)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345678888888888888888775
No 313
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.77 E-value=0.7 Score=26.87 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=25.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 596 ARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999988764
No 314
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.49 E-value=3.5 Score=38.42 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHhHHHHHH
Q 005802 429 LISTLVDMYSKCGNMTYAEIIFQNFIER---DLVLYNVMIACYAHHGHEEKAILLFEEMLE-----KGIKPDAVTFVAIL 500 (676)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll 500 (676)
++..++..+..+|+++.+.+.++.+... +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4556677777777777777777766532 556777777777777777777777777654 56666666555544
Q ss_pred HH
Q 005802 501 SA 502 (676)
Q Consensus 501 ~~ 502 (676)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
No 315
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.09 E-value=0.8 Score=38.90 Aligned_cols=59 Identities=17% Similarity=0.002 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHhC-----------CHhHHHHHHHHHHcccCCCCccHHHHHHHHHh-cCChhHHHHHHHHHHhCCC
Q 005802 560 DAVILGSFLNVCRLNR-----------NAELAGEAEEKLLRLEGNNKARYVQLANVYAA-EGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~ 626 (676)
...++..+++++...+ .+++|...|+++.+.+|.+ .+|.+ ..-.++|=++..++.+.+.
T Consensus 68 ~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n--------e~Y~ksLe~~~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 68 KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN--------ELYRKSLEMAAKAPELHMEIHKQGL 138 (186)
T ss_dssp -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT---------HHHHHHHHHHHTHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc--------HHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 4456666666665443 2455666666666666665 24433 2333455555555554443
No 316
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.92 E-value=16 Score=31.77 Aligned_cols=110 Identities=14% Similarity=0.044 Sum_probs=75.1
Q ss_pred HHHHHHHHchhhcCCCCCHHHHHH-----HHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHH-----HHHHHHHhCCHhHH
Q 005802 511 MGEKYFNSMTADYKISPETDHYAC-----MIDLYGRANQLEKAIEFMKSIPTEEDAVILGS-----FLNVCRLNRNAELA 580 (676)
Q Consensus 511 ~a~~~~~~~~~~~~~~p~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a 580 (676)
+.....+.+... +...+|.. +...+..+|++++|...++.....|....+.. |.......|.++.|
T Consensus 70 ~~~~~~ekf~~~----n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQA----NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhh----ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444445555443 22334443 35567889999999999997774454444443 44467788999999
Q ss_pred HHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 581 GEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
...++...+..= .+.....-++++...|+-++|+.-|+...+.+
T Consensus 146 L~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 146 LKTLDTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHhccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 998876543210 12335677899999999999999999998765
No 317
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.68 E-value=2.3 Score=39.61 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHc
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLR 589 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 589 (676)
..++..++..+...|+.+.+...+++.. .+-+...|..++.+|...|+...|+..|+++.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445555555555555555555555554 233555555555555555555555555555554
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.57 E-value=4.1 Score=35.64 Aligned_cols=74 Identities=16% Similarity=0.103 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHHhCCCCC--cHHHHHHHHHHHHHhCCHhHHHHHHHHHHccc----CCCCccHHHHHHHHHhcCChhHHH
Q 005802 542 ANQLEKAIEFMKSIPTEE--DAVILGSFLNVCRLNRNAELAGEAEEKLLRLE----GNNKARYVQLANVYAAEGNWAEMG 615 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~ 615 (676)
.-.-++|...|-.+...| +...+-..+..|....|.++++.++-+++++. .-|+.++..|+.+|.+.|+++.|-
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 334466777776666333 33444555566777889999999999999882 236888999999999999998874
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.80 E-value=4.2 Score=30.45 Aligned_cols=63 Identities=10% Similarity=0.204 Sum_probs=48.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 005802 473 HEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMID 537 (676)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 537 (676)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++..+.+-+ .+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456666777777788899999999999999999999999999998865422 24456666554
No 320
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.51 E-value=1.9 Score=40.45 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=64.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhc
Q 005802 465 IACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRA 542 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 542 (676)
..-|.+.|.+++|+..|.+-+. +.| |.+++..-..+|.+...+..|..-......- .-. ...|..-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---d~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---DKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---hHHHHHHHHHHHHHHHHH
Confidence 4568999999999999998887 456 8888888888999999998888777766532 111 33344444444445
Q ss_pred CCHHHHHHHHHhCC-CCCcHH
Q 005802 543 NQLEKAIEFMKSIP-TEEDAV 562 (676)
Q Consensus 543 g~~~~A~~~~~~~~-~~~~~~ 562 (676)
|+..+|.+-++... ..|...
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccH
Confidence 66667766666655 556543
No 321
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.51 E-value=40 Score=34.22 Aligned_cols=175 Identities=13% Similarity=0.202 Sum_probs=115.8
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 005802 423 VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI--ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAIL 500 (676)
Q Consensus 423 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 500 (676)
.+.|....-+++..++..-+..-.+.+-.+|. ..+-..|..++++|... ..++-..+|+++.+..+. |.+.-..|.
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 35556666778888887777777777777775 34667888899999988 667888899998885432 333334455
Q ss_pred HHhhccCcHHHHHHHHHHchhhcCCCCC------HHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCcHHHHHHHHHH
Q 005802 501 SAFRHCGSVEMGEKYFNSMTADYKISPE------TDHYACMIDLYGRANQLEKAIEFMKSIP----TEEDAVILGSFLNV 570 (676)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~ 570 (676)
..|.+ ++.+.+..+|.....+ +-|. ...|..|.... ..+.+..+.+..++. ...-...+..+..-
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 55544 8888888888887653 2331 23455444422 345666666666655 22234455555567
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHH
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
|....++.+|++++..+++.+..|-.+...++.-
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 8888999999999998888876665544444433
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.36 E-value=65 Score=36.55 Aligned_cols=110 Identities=12% Similarity=0.046 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHh--HHHHHHHHHHh
Q 005802 327 SISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDAL--ILVILLGACAL 404 (676)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~ 404 (676)
.|.+....+...+.+++|.-.|+...+ ..-.+.+|..+|+|++|+.+-.++ .. .-+.. +-..|...+..
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql-~~---~~de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQL-SE---GKDELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhh-cC---CHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555554432 122345566667777777776654 11 11111 11334444445
Q ss_pred hcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 005802 405 QAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNF 453 (676)
Q Consensus 405 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 453 (676)
.++.-+|-.+..+.... ....+..|++...+++|.++-...
T Consensus 1012 ~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred cccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 55555555444333221 122344555556666666554433
No 323
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.15 E-value=6.2 Score=34.35 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=36.9
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
.+..+..-|.+.|+.+.|.+.|.++... ...|. ...+-.++....-.|++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4555666667777777777777776543 44444 4445556666666666666666655554
No 324
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.04 E-value=0.64 Score=43.63 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=65.0
Q ss_pred hcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHH
Q 005802 541 RANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIR 618 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 618 (676)
..|.+++|++.+...+ .++....+..-..++.+.+....|++-+..+++++|+...-|-.-+.+-...|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 4566777777776666 33344444444556777778888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCccc
Q 005802 619 KQMRGMKGNRF 629 (676)
Q Consensus 619 ~~~~~~~~~~~ 629 (676)
....+.+.+..
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 88887766543
No 325
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.01 E-value=1.9 Score=38.47 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=22.3
Q ss_pred HHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 572 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
.+.++++.+..-..+++++.|+.......|+..+.....+++|+..+.+.
T Consensus 55 lk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 55 LKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.89 E-value=1.5 Score=27.46 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 599 VQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
..|+.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468999999999999999999988644
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.82 E-value=1.2 Score=27.26 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=23.1
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 596 ARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
.++..|+.+|...|++++|..++++....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35778899999999999999999888653
No 328
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.69 E-value=0.83 Score=26.75 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=21.4
Q ss_pred HHHHHHhCCCCCcccHHHHHHHHHhCCCchHHH
Q 005802 13 HVQAIKAGLTLTTITTNQLIHIYSKHNLLRESR 45 (676)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 45 (676)
|.+.++.. |-++.+|+.+..+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555 556777777777777777777765
No 329
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.42 E-value=6.1 Score=29.97 Aligned_cols=61 Identities=10% Similarity=0.204 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 005802 475 EKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMID 537 (676)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 537 (676)
-+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+.++.+-+ +....|..++.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 35566677777778899999999999999999999999999999876533 33336776665
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.38 E-value=1.6 Score=26.72 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
+++.+...|...|++++|+.+++++.+.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4555666666666666666666666544
No 331
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.38 E-value=28 Score=31.36 Aligned_cols=92 Identities=15% Similarity=0.145 Sum_probs=43.8
Q ss_pred HHHHHhhc-CCHHHHHHHHHhCC--C---CCcHHHHHHHH---HHHHHhCCHhHHHHHHHHHHcccCCCCc------cHH
Q 005802 535 MIDLYGRA-NQLEKAIEFMKSIP--T---EEDAVILGSFL---NVCRLNRNAELAGEAEEKLLRLEGNNKA------RYV 599 (676)
Q Consensus 535 l~~~~~~~-g~~~~A~~~~~~~~--~---~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~ 599 (676)
+...|-.. .++++|+..++... . ..+...-..++ ......+++.+|+.+|++.....-+++- -|.
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 44444433 45566666555544 1 11111122222 2335667788888888877665333321 122
Q ss_pred HHHH-HHHhcCChhHHHHHHHHHHhCCC
Q 005802 600 QLAN-VYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 600 ~l~~-~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.-+. ++.-.++.=.+...+++..+..+
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 2222 22223555556666666555443
No 332
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.30 E-value=8.5 Score=33.92 Aligned_cols=108 Identities=13% Similarity=0.093 Sum_probs=64.1
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHH
Q 005802 504 RHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELA 580 (676)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 580 (676)
-+.|-+.-|.--|.+.. .+.|+ +..||.|.--+...|+++.|.+.|+... ..| ...+...-.-++.--|+++.|
T Consensus 76 DSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 76 DSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhh
Confidence 33455555555555554 55677 7777777777778888888888887766 222 222222222244455778888
Q ss_pred HHHHHHHHcccCCCCccHHHHHHHHHhcC--ChhHHHHH
Q 005802 581 GEAEEKLLRLEGNNKARYVQLANVYAAEG--NWAEMGRI 617 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~ 617 (676)
.+-+-+.-+.+|.|| |..| +.|.... +..+|..-
T Consensus 153 q~d~~~fYQ~D~~DP--fR~L-WLYl~E~k~dP~~A~tn 188 (297)
T COG4785 153 QDDLLAFYQDDPNDP--FRSL-WLYLNEQKLDPKQAKTN 188 (297)
T ss_pred HHHHHHHHhcCCCCh--HHHH-HHHHHHhhCCHHHHHHH
Confidence 887777777777765 3332 4454433 44455543
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.85 E-value=18 Score=37.30 Aligned_cols=148 Identities=17% Similarity=0.117 Sum_probs=89.3
Q ss_pred hcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCcHHHHHHHHH
Q 005802 439 KCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV-TFVAILSAFRHCGSVEMGEKYFN 517 (676)
Q Consensus 439 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 517 (676)
-.|+++.|..++-.++++ .-+.++.-+.+.|-.++|+++ .+|.. -|.. ..+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 356666666666555532 234455555666766666653 33322 2222 236678888877766
Q ss_pred HchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 518 SMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 518 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
+.. +..-|..|.++..+.|++..|.+.|.+.. .|..|+-.+...|+.+.-..+-..+.+....|
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 552 45667888888888888888888887764 45566666667777665555555554443332
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 005802 598 YVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
.--.+|...|++++..+++..
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHh
Confidence 222356667777777776654
No 334
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.54 E-value=2.2 Score=23.73 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 598 YVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
+..++.++...|++++|...++...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 335
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.43 E-value=20 Score=33.65 Aligned_cols=53 Identities=17% Similarity=0.146 Sum_probs=46.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 005802 237 NGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNG 289 (676)
Q Consensus 237 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 289 (676)
.-++++++.++..=++-|+-||.++++.+|+.+.+.+++..|.++.-.|+...
T Consensus 113 ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 113 KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34678999999888899999999999999999999999999999988887664
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.76 E-value=31 Score=30.67 Aligned_cols=124 Identities=16% Similarity=0.116 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TDHYACM 535 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 535 (676)
|.+..++.+.+.+...+|+...++-++.. +.|..+-..+++.++-.|++++|..-++..- .+.|+ ...|..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence 34556677888899999999888777652 3345566678888999999999988877663 33443 5566666
Q ss_pred HHHHhhcCCHHHHH-HHHHhCC-----CCCcHHHHHHHHHHH--HHhCCHhHHHHHHHHHHcccCCC
Q 005802 536 IDLYGRANQLEKAI-EFMKSIP-----TEEDAVILGSFLNVC--RLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 536 ~~~~~~~g~~~~A~-~~~~~~~-----~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
+++ +.+. ++|.--. ..|.+.-...+..+. ...|..+.+..+-+.+.+..|..
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 654 2222 2333222 123343334444433 33345555666777777776654
No 337
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.57 E-value=69 Score=34.49 Aligned_cols=100 Identities=10% Similarity=0.025 Sum_probs=63.2
Q ss_pred HHHHHhCCCchHHHHHhccCCC--C---CcchHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCCChhH
Q 005802 32 IHIYSKHNLLRESRKLFDEMPE--R---NVFSWNTIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEAD 106 (676)
Q Consensus 32 ~~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 106 (676)
++.+.+.+.+++|+++-+.... + -...+...|..+.-.|++++|-.+.-.|...+...|-.-+..+...++.. .
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~-~ 441 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT-D 441 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc-h
Confidence 4566677777888777766654 2 23466777777778888888877777777667677776666666665555 2
Q ss_pred HHHHHHHhHhccCCCCCChhhHHHHHHHHHc
Q 005802 107 ALKLFIEMQSADEHIRMDEFTVTSTLNLCVK 137 (676)
Q Consensus 107 a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~ 137 (676)
++.-+.. ...+.+...|..++..+..
T Consensus 442 ---Ia~~lPt--~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 442 ---IAPYLPT--GPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ---hhccCCC--CCcccCchHHHHHHHHHHH
Confidence 2223332 2223455667777766655
No 338
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.07 E-value=3 Score=31.36 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=21.0
Q ss_pred HHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 584 EEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 584 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
+++..+.+|+|......++..+...|++++|.+.+-.+.+.
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34444445555555555555555555555555555555444
No 339
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.73 E-value=13 Score=34.81 Aligned_cols=101 Identities=18% Similarity=0.219 Sum_probs=72.0
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CC-----cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh
Q 005802 421 MGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE-RD-----LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV 494 (676)
Q Consensus 421 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 494 (676)
.|.+....+...++..-....+++++...+-++.. |+ ..+-.+.++.+. .-+.++++.++..=++-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 35555666666667666667788888887777652 21 112222333333 346678888888888999999999
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhh
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTAD 522 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 522 (676)
+++.++..+.+.+++.+|.++...|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999988887776544
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.44 E-value=19 Score=37.12 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=40.4
Q ss_pred HhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHH
Q 005802 203 CREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIH 282 (676)
Q Consensus 203 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 282 (676)
.+.|+.+.|.++..+.. +..-|..|-++..+.|++..|.+.|..... |..|+-.+...|+-+....+-
T Consensus 648 l~lgrl~iA~~la~e~~---s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN---SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhcCcHHHHHHHHHhhc---chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 44566666655554432 445566666666666666666666655443 233444445555555444444
Q ss_pred HHHHHhC
Q 005802 283 SWVLKNG 289 (676)
Q Consensus 283 ~~~~~~~ 289 (676)
....+.|
T Consensus 716 ~~~~~~g 722 (794)
T KOG0276|consen 716 SLAKKQG 722 (794)
T ss_pred HHHHhhc
Confidence 4444444
No 341
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=82.32 E-value=6.1 Score=33.82 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHCCCCCCHhH---HHHHHHHhhccCcHHHHHHHHHHchhhc----CCCCC-HHHHHHHHHHHhhcC
Q 005802 474 EEKAILLFEEMLEKGIKPDAVT---FVAILSAFRHCGSVEMGEKYFNSMTADY----KISPE-TDHYACMIDLYGRAN 543 (676)
Q Consensus 474 ~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g 543 (676)
++.|.+.++.-...+ +.|... |...+.-+++.....++..+++....++ .+.|+ ...+.++..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 344555555433322 223332 3333333444455566666666654433 45677 566777777666543
No 342
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.12 E-value=11 Score=34.02 Aligned_cols=59 Identities=19% Similarity=0.055 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
+...++...|++-++++.....+...|.+..+|+.-+.+....=+.++|..-+....+.
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 34445567889999999999999999999999999999988888889999888887754
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.11 E-value=5.5 Score=35.07 Aligned_cols=64 Identities=16% Similarity=0.013 Sum_probs=52.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-C-CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP-T-EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
.+.-++.+.+.+.+.+|+...+.-. . +.+......++..++..|++++|..-++-+-++.|...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3445677888999999999887655 3 44777888899999999999999999999999988753
No 344
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.28 E-value=91 Score=34.27 Aligned_cols=220 Identities=15% Similarity=0.056 Sum_probs=113.2
Q ss_pred HHHhhcChhHHHHHHHHHHHcCCCCChh-------HHHHHH-HHHHhcCCHHHHHHHHhhcC--------CCCcchHHHH
Q 005802 401 ACALQAALHPGKEIHAYILRMGVQMDKK-------LISTLV-DMYSKCGNMTYAEIIFQNFI--------ERDLVLYNVM 464 (676)
Q Consensus 401 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l 464 (676)
......++.+|..+..++...-..|+.. .++.|- ......|+++.|.++-+... .+..+.+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3445667777777776665533222211 222221 12234677788776655432 2356677778
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHH---HHHH--HHhhccCcHH--HHHHHHHHchhhcCCC-----CCHHHH
Q 005802 465 IACYAHHGHEEKAILLFEEMLEKGIKPDAVTF---VAIL--SAFRHCGSVE--MGEKYFNSMTADYKIS-----PETDHY 532 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~---~~ll--~~~~~~g~~~--~a~~~~~~~~~~~~~~-----p~~~~~ 532 (676)
..+..-.|++++|..+..+..+..-.-+...+ ..+. ..+...|+.. +....+......+... +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 88888889999998887766553222232222 2222 2355566332 2333333332221111 123445
Q ss_pred HHHHHHHhhc-CCHHHHHHHHHhCC-CCCcHH--H--HHHHHHHHHHhCCHhHHHHHHHHHHcccCCC-Cc-cHHHH---
Q 005802 533 ACMIDLYGRA-NQLEKAIEFMKSIP-TEEDAV--I--LGSFLNVCRLNRNAELAGEAEEKLLRLEGNN-KA-RYVQL--- 601 (676)
Q Consensus 533 ~~l~~~~~~~-g~~~~A~~~~~~~~-~~~~~~--~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~-~~~~l--- 601 (676)
..+..++.+. +...+|..-++--. ..|.+. . +..+.......|+.++|...+.++......+ +. .|...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 5555555551 12222222222211 233222 1 1255667788999999999999888773322 22 12111
Q ss_pred --HHHHHhcCChhHHHHHHHH
Q 005802 602 --ANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 602 --~~~~~~~g~~~~A~~~~~~ 620 (676)
.......|+.++|.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 1223457888888777655
No 345
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.04 E-value=2.6 Score=23.38 Aligned_cols=31 Identities=26% Similarity=0.030 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHcccC
Q 005802 562 VILGSFLNVCRLNRNAELAGEAEEKLLRLEG 592 (676)
Q Consensus 562 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 592 (676)
..+..+...+...++++.|...++++++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3567778889999999999999999998766
No 346
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.00 E-value=13 Score=30.68 Aligned_cols=109 Identities=8% Similarity=0.073 Sum_probs=67.7
Q ss_pred CHhHHHHHHHH---hhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-cHHHHHH
Q 005802 492 DAVTFVAILSA---FRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPTEE-DAVILGS 566 (676)
Q Consensus 492 ~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 566 (676)
+....+.|+.. -...++.+++..++..|. -+.|+ ...-..-...+...|++.+|+.+|++....+ ....-..
T Consensus 6 s~~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kA 82 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKA 82 (153)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHH
Confidence 33445555543 345789999999999997 55676 3333334566789999999999999998333 3222223
Q ss_pred HHHHHH-HhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 567 FLNVCR-LNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 567 l~~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
|...|. -.|| ..|...+......|.-.+|..+.+.+.
T Consensus 83 L~A~CL~al~D-------------------p~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 83 LLALCLNAKGD-------------------AEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHhcCC-------------------hHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 333332 2222 235555555556666667777777666
No 347
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=80.66 E-value=60 Score=31.78 Aligned_cols=195 Identities=13% Similarity=0.161 Sum_probs=114.3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHH-HH-HHHCCCCCCHhHHHHHHH
Q 005802 424 QMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLF-EE-MLEKGIKPDAVTFVAILS 501 (676)
Q Consensus 424 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-~~-m~~~g~~p~~~~~~~ll~ 501 (676)
..+..++..++..|...++|+.--+.+. ...-++|+...|.... ++ |.-..-.||..|-..++.
T Consensus 49 ~s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~ 114 (439)
T KOG1498|consen 49 ASNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIE 114 (439)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHH
Confidence 4455566667777777777665433322 1224567777776532 22 222223456555555554
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCC---CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--------cHHHHHHHHHH
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISP---ETDHYACMIDLYGRANQLEKAIEFMKSIPTEE--------DAVILGSFLNV 570 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~l~~~ 570 (676)
.+.. ..+- .+-. ....-..|...+-.+|+.++|..++.+.+... -.....--++.
T Consensus 115 tLr~-------------Vteg-kIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrK 180 (439)
T KOG1498|consen 115 TLRT-------------VTEG-KIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRL 180 (439)
T ss_pred HHHH-------------hhcC-ceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHH
Confidence 3321 1110 1111 12233356677778899999988888876221 11122334567
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCC-------CccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEE
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNN-------KARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHI 643 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (676)
|...+||-.|.-+-+++....=+. ...|..++....+.+.|=++-+.++..-..|..+...--|.++...+..
T Consensus 181 OG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~ 260 (439)
T KOG1498|consen 181 CLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVS 260 (439)
T ss_pred HHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhhee
Confidence 888999999999998887662222 2357888888888899999999999888877655533345555444333
Q ss_pred EEe
Q 005802 644 FTV 646 (676)
Q Consensus 644 ~~~ 646 (676)
|..
T Consensus 261 f~~ 263 (439)
T KOG1498|consen 261 FCV 263 (439)
T ss_pred EEe
Confidence 433
No 348
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.38 E-value=4.8 Score=28.88 Aligned_cols=47 Identities=6% Similarity=0.058 Sum_probs=29.2
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHH
Q 005802 505 HCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEF 551 (676)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 551 (676)
.....++|+..|+...++..-.|+ ..++..|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777776665333333 45566667777777777766655
No 349
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.87 E-value=46 Score=30.02 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=32.1
Q ss_pred HHHhhcCCHHHHHHHHHhCC-CC--CcHHHH---HHHHH--HHH-HhCCHhHHHHHHHHHHcccCCC
Q 005802 537 DLYGRANQLEKAIEFMKSIP-TE--EDAVIL---GSFLN--VCR-LNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~-~~--~~~~~~---~~l~~--~~~-~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
..-+..+++.+|+++|++.. .. .+..-| ..++. .|. ...|.-.+...+++..+++|.-
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 33445677778888877665 11 111111 11221 232 2367777788888888888863
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.73 E-value=24 Score=26.76 Aligned_cols=52 Identities=12% Similarity=-0.035 Sum_probs=39.1
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCCChhHHHHHHHHhHh
Q 005802 62 IISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQS 116 (676)
Q Consensus 62 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 116 (676)
-+..+..+|++++|..+.+.+.-||...|-+|-.. +.|-.. .+..-+.+|..
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s-~l~~rl~rla~ 96 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGS-ALESRLNRLAA 96 (115)
T ss_pred HHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHH-HHHHHHHHHHh
Confidence 35567889999999999999999999999887654 455555 56666666654
No 351
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.35 E-value=16 Score=32.07 Aligned_cols=74 Identities=11% Similarity=0.041 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcC--CCCCHHHHHHHHHHHhhcCCHHHHH
Q 005802 475 EKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYK--ISPETDHYACMIDLYGRANQLEKAI 549 (676)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~ 549 (676)
+.|...|-++...+.--++.....|...| ...+.+++..++-...+-.. -.+|+..+.+|+..+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 56677777776665443444444444433 35677777777766654322 2456777777777777777777664
No 352
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.29 E-value=6.4 Score=36.38 Aligned_cols=61 Identities=13% Similarity=0.064 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+++.....|...|.+.+|.++.++++..+|-+...+..|..+|...|+--.|.+.++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3444556788999999999999999999999999999999999999998888888887754
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.09 E-value=5.4 Score=28.63 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=34.5
Q ss_pred HhCCHhHHHHHHHHHHcccCCCCccHHHHH---HHHHhcCChhHHHHHH
Q 005802 573 LNRNAELAGEAEEKLLRLEGNNKARYVQLA---NVYAAEGNWAEMGRIR 618 (676)
Q Consensus 573 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~---~~~~~~g~~~~A~~~~ 618 (676)
..++.++|+..++++++..++.+.-|..|+ .+|...|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888899999999888776666555544 5677788888887763
No 354
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=78.73 E-value=94 Score=33.33 Aligned_cols=100 Identities=20% Similarity=0.300 Sum_probs=61.5
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHhH---HHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCC
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKPDAVT---FVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQ 544 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 544 (676)
|...+..+.|.++|++..+ +.|+..+ +..|+.+-.+ .++...++ +.+ | -.|-..+++.|.
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~El-q~I----g--------mkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLEL-QQI----G--------MKLNSLLGRKGA 359 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHHH-HHH----H--------HHHHHHhhccch
Confidence 4445667788888888877 5676442 3344433221 12211111 111 1 134456778888
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 545 LEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 545 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
.++-.++++-. +++.+-.-.+|+.+|.+..+.+.++.|+.
T Consensus 360 leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 360 LEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 88888777543 34556667889999999999999998864
No 355
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.66 E-value=15 Score=28.04 Aligned_cols=47 Identities=4% Similarity=0.097 Sum_probs=35.6
Q ss_pred HHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHh
Q 005802 106 DALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKT 154 (676)
Q Consensus 106 ~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 154 (676)
+..+-++.+.. ....|++....+.+++|.+.+++..|.++++-++..
T Consensus 28 e~rrglN~l~~--~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFG--YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTT--SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55566666666 778899999999999999999999999999988776
No 356
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.35 E-value=6 Score=26.06 Aligned_cols=32 Identities=19% Similarity=0.042 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
.+.-++.+.|+++.|.+..+.+++..|+|...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45557889999999999999999999987644
No 357
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.29 E-value=31 Score=34.46 Aligned_cols=121 Identities=14% Similarity=0.152 Sum_probs=66.7
Q ss_pred HHcCChhHHHH-HHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHH
Q 005802 469 AHHGHEEKAIL-LFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEK 547 (676)
Q Consensus 469 ~~~~~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 547 (676)
...|+...|-+ ++..+....-.|+.......| +...|+++.+.+.+..... -+.....+..++++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34566555543 344444433344444333332 4566777777777766632 233345566667777777777777
Q ss_pred HHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 548 AIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 548 A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
|..+-+-|. .-.++.............|-++++.-.+++...++|+
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 777766665 1123333333333445556666777777777666544
No 358
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.25 E-value=7.4 Score=39.70 Aligned_cols=98 Identities=14% Similarity=0.067 Sum_probs=68.2
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhH
Q 005802 504 RHCGSVEMGEKYFNSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAEL 579 (676)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 579 (676)
...|+...|...+.... ...|- ......|...+.+.|...+|-.++.... ....+.++-.+++++....+.+.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 44677777877776664 33443 3344566777777777777777776554 34456677777788888888888
Q ss_pred HHHHHHHHHcccCCCCccHHHHHHH
Q 005802 580 AGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 580 a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
|++.++.+.++.|+++.+-..|..+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHH
Confidence 8888888888888887776666544
No 359
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.05 E-value=1e+02 Score=32.90 Aligned_cols=249 Identities=12% Similarity=0.077 Sum_probs=131.2
Q ss_pred HHcCChHHHHHHHHHHHHc-------CCCCCCHhHHHHHHHHHHhhc-----ChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 005802 367 VKAQNCEALFDLLSEFVTK-------EGVVTDALILVILLGACALQA-----ALHPGKEIHAYILRMGVQMDKKLISTLV 434 (676)
Q Consensus 367 ~~~~~~~~a~~~~~~m~~~-------~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 434 (676)
....+.+.|+.+|+.+ .. .+ .......+-..|.+.. +.+.|..++....+.|. |+....-..+
T Consensus 260 g~~~d~e~a~~~l~~a-a~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLA-AESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVL 334 (552)
T ss_pred cccccHHHHHHHHHHH-HHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 3445666676666665 22 22 2223333334443322 45557777777766663 3332222222
Q ss_pred HHHHh-cCCHHHHHHHHhhcCCC-CcchHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCc
Q 005802 435 DMYSK-CGNMTYAEIIFQNFIER-DLVLYNVMIACYAH----HGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGS 508 (676)
Q Consensus 435 ~~~~~-~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 508 (676)
..... -.+...|.++|...-+. ....+-.+..+|.. ..+...|..++.+..+.| .|...--...+..+.. +.
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cc
Confidence 22222 23566777777766533 33333333333322 346788888888888877 4432222233333444 66
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHH---hh----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----hCCH
Q 005802 509 VEMGEKYFNSMTADYKISPETDHYACMIDLY---GR----ANQLEKAIEFMKSIPTEEDAVILGSFLNVCRL----NRNA 577 (676)
Q Consensus 509 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 577 (676)
++.+.-.+..+.+. +..-....-..+.... .. ..+.+.+..++.+.....+......+...|.. ..++
T Consensus 413 ~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~ 491 (552)
T KOG1550|consen 413 YDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDP 491 (552)
T ss_pred ccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCCh
Confidence 66666555555332 3221111111111111 11 22556677777766655666666666665543 3468
Q ss_pred hHHHHHHHHHHcccCCCCccHHHHHHHHHhc---CChhHHHHHHHHHHhCCC
Q 005802 578 ELAGEAEEKLLRLEGNNKARYVQLANVYAAE---GNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 578 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~ 626 (676)
+.|...+.++.... +.....|+..+... .++..|.++++...+.+.
T Consensus 492 ~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 492 EKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDS 540 (552)
T ss_pred HHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCc
Confidence 88888888887665 56677777777552 126888888887776443
No 360
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.99 E-value=1.9e+02 Score=36.02 Aligned_cols=109 Identities=8% Similarity=0.026 Sum_probs=69.0
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCc--------HH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEED--------AV 562 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~--------~~ 562 (676)
..+|....+.....|.++.|...+-...+. + . +..+--.+..+...|+...|+.++++.. ..|+ +.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~-r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKES-R-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhc-c-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 456777777777889999888777666443 2 3 3344456777888899999988887755 1111 22
Q ss_pred HHHHHHH--------HH-HHhCC--HhHHHHHHHHHHcccCCCCccHHHHHHHH
Q 005802 563 ILGSFLN--------VC-RLNRN--AELAGEAEEKLLRLEGNNKARYVQLANVY 605 (676)
Q Consensus 563 ~~~~l~~--------~~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 605 (676)
.-+..+. -| ...++ .+.-+..|..+.+..|.....|+.|+.-|
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 2222221 11 12333 35667888888888998777788777444
No 361
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.75 E-value=19 Score=27.17 Aligned_cols=61 Identities=13% Similarity=0.010 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 005802 240 AEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIV 301 (676)
Q Consensus 240 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 301 (676)
.-++.+-++.+....+.|+.....+.+++|.+.+|+..|.++++-+....- .+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~-~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG-AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-CchhhHHHHH
Confidence 345566666677777888888888888888888888888888887664321 1333455444
No 362
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.66 E-value=76 Score=35.31 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCCchHHHHHhccCCCCCcch-----HHHHHH---HHHhcCChHHHHHHhccCC
Q 005802 28 TNQLIHIYSKHNLLRESRKLFDEMPERNVFS-----WNTIIS---ACIKSHDLKQARSLFDSSP 83 (676)
Q Consensus 28 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~ll~---~~~~~g~~~~A~~~~~~~~ 83 (676)
+..=+..+-...++++|..+-+....|++.. +..... -+..+|++++|.+.|.++.
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 3344444445555666666666555544421 111111 1345677777777776654
No 363
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=77.45 E-value=2 Score=34.11 Aligned_cols=39 Identities=36% Similarity=0.706 Sum_probs=25.2
Q ss_pred ceeEEEEcCEEEEEEeCCCCCCChHHHHHHH-HHHHHHHHhcCC
Q 005802 631 GCSWVYVEHEIHIFTVGDVSHPKTNAIYSVL-AIFTGELYEIAG 673 (676)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 673 (676)
|.||.++ +.|++||.+||+...+...+ ......++..||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~~~~~~~~~~~~~ 41 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKEEGYVPDTKEVGH 41 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHHcCCcchhhhhCC
Confidence 5678877 89999999999984444432 233344444443
No 364
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.03 E-value=25 Score=32.62 Aligned_cols=87 Identities=10% Similarity=0.115 Sum_probs=51.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC--CCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh-
Q 005802 465 IACYAHHGHEEKAILLFEEMLEK--GIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR- 541 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 541 (676)
|++++..|++.+++.+.-+--+. .++|.. ...-|-.|.+.|.+..+.++-...... .-.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 56677777777777665554432 233333 333333477777777777777766544 222224446666665543
Q ss_pred ----cCCHHHHHHHHHh
Q 005802 542 ----ANQLEKAIEFMKS 554 (676)
Q Consensus 542 ----~g~~~~A~~~~~~ 554 (676)
.|.+++|++++..
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 5788888777743
No 365
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.02 E-value=1e+02 Score=32.88 Aligned_cols=15 Identities=13% Similarity=0.126 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHcC
Q 005802 408 LHPGKEIHAYILRMG 422 (676)
Q Consensus 408 ~~~a~~~~~~~~~~~ 422 (676)
...+..+++...+.|
T Consensus 228 ~~~a~~~~~~~a~~g 242 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG 242 (552)
T ss_pred hhHHHHHHHHHHhhc
Confidence 344555555555554
No 366
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.43 E-value=1.2e+02 Score=32.95 Aligned_cols=446 Identities=8% Similarity=-0.054 Sum_probs=216.2
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCC-chhhHHHHHHHHHhc
Q 005802 127 TVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEV-NLISKNAMVAACCRE 205 (676)
Q Consensus 127 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~ 205 (676)
.|.....+ .+.|+...+.++...+....+ ..-..|..+...+. ...+++...++++-+..| ........+..+.+.
T Consensus 36 ~f~~A~~a-~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~ 112 (644)
T PRK11619 36 RYQQIKQA-WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANPTLPPARSLQSRFVNELARR 112 (644)
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 34433333 345566666666555432211 00112222222221 235666666666655422 223334455566667
Q ss_pred CChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHH
Q 005802 206 GEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWV 285 (676)
Q Consensus 206 g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 285 (676)
+++...++.+.. + +.+...--....+....|+.++|....+.+-..|. .....+..++..+.+.|.+
T Consensus 113 ~~w~~~~~~~~~-~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~l---------- 179 (644)
T PRK11619 113 EDWRGLLAFSPE-K-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQ---------- 179 (644)
T ss_pred cCHHHHHHhcCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCC----------
Confidence 777766663322 2 23333334455566667776666666666544432 1233444444444333322
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHH
Q 005802 286 LKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSG 365 (676)
Q Consensus 286 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 365 (676)
.+..++.. +......|+...|..+...+..........++..... ...+..++.... ++...-..++.+
T Consensus 180 ------t~~d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~ 248 (644)
T PRK11619 180 ------DPLAYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVA 248 (644)
T ss_pred ------CHHHHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHH
Confidence 22222222 3444456667777666665532222223333333332 333333333321 222111112222
Q ss_pred H--HHcCChHHHHHHHHHHHHcCCCCCCHhH--HHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 005802 366 Y--VKAQNCEALFDLLSEFVTKEGVVTDALI--LVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCG 441 (676)
Q Consensus 366 ~--~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 441 (676)
+ ....+.+.|...+.......+..+.... ...+.......+....+...+...... ..+......-+..-.+.+
T Consensus 249 l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 249 FASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHcc
Confidence 2 2345668888888876333334333322 222222222222134444444433222 124444455555556888
Q ss_pred CHHHHHHHHhhcCCC--CcchH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHH-----HH
Q 005802 442 NMTYAEIIFQNFIER--DLVLY-NVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEM-----GE 513 (676)
Q Consensus 442 ~~~~A~~~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-----a~ 513 (676)
+++.+...+..|+.. +...| -=+..++...|+.++|...|++... . .+|..++.+ .+.|..-. .-
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa-~~Lg~~~~~~~~~~~ 399 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAA-QRLGEEYPLKIDKAP 399 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHH-HHcCCCCCCCCCCCC
Confidence 888888888888632 22222 2245666668999999999888743 1 234333322 11221100 00
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccC-
Q 005802 514 KYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEG- 592 (676)
Q Consensus 514 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p- 592 (676)
..-..+ .-.| -..-+..+...|+..+|...+..+....++.....+.......|.++.++....+....+.
T Consensus 400 ~~~~~~----~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~ 471 (644)
T PRK11619 400 KPDSAL----TQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHL 471 (644)
T ss_pred chhhhh----ccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHH
Confidence 000000 0011 1123556677899999998887776445666667777777788888888887765443210
Q ss_pred --CCCccHHHHHHHHHhcCChhHHHH
Q 005802 593 --NNKARYVQLANVYAAEGNWAEMGR 616 (676)
Q Consensus 593 --~~~~~~~~l~~~~~~~g~~~~A~~ 616 (676)
.-|..|...+..+.+.-..+.+.-
T Consensus 472 ~~rfp~~~~~~~~~~a~~~~v~~~lv 497 (644)
T PRK11619 472 EERFPLAWNDEFRRYTSGKGIPQSYA 497 (644)
T ss_pred HHhCCcchHHHHHHHHHHcCCCHHHH
Confidence 113346666666666666666554
No 367
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.36 E-value=73 Score=29.89 Aligned_cols=138 Identities=19% Similarity=0.198 Sum_probs=69.2
Q ss_pred HHhcCChhHHHHHH----HHHHhCCCCCcHhHHHHHHHHHhCCCC-----hHHHHHHHHHHHHhCC--CCchhHHHHHHH
Q 005802 234 YVQNGDAEEGLKLF----VRMGENGVRWNEHTFASALSACCGLRN-----VKCAKEIHSWVLKNGL--ISNPFVSSGIVD 302 (676)
Q Consensus 234 ~~~~g~~~~a~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 302 (676)
+.+.|+...|.++- +-+.+.++++|......++..+...+. ..-..+...+- +.|- .-++.....+..
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHH
Confidence 44555554444433 333345666666555555554443321 12222333333 3222 347788889999
Q ss_pred HHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 005802 303 VYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEF 382 (676)
Q Consensus 303 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 382 (676)
.|.+.|++..|+..|-....++...+..++......|...++--+ ..-.+-.|...++...|...+...
T Consensus 99 ~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlf-----------i~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLF-----------IARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHH-----------HHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHH-----------HHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999777666555555544444444444443333111 122334456677888888877776
Q ss_pred H
Q 005802 383 V 383 (676)
Q Consensus 383 ~ 383 (676)
.
T Consensus 168 ~ 168 (260)
T PF04190_consen 168 T 168 (260)
T ss_dssp H
T ss_pred H
Confidence 4
No 368
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=74.54 E-value=15 Score=33.07 Aligned_cols=62 Identities=16% Similarity=0.006 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCH-------hHHHHHHHHHHcc--cCCC----CccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 564 LGSFLNVCRLNRNA-------ELAGEAEEKLLRL--EGNN----KARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 564 ~~~l~~~~~~~~~~-------~~a~~~~~~~~~~--~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
+..+.+.|...|+. ..|...|+++.+. .|.. ......+|.+..+.|++++|.+.+.++...+
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34444555555553 3445555555544 2222 3456788888999999999999998887643
No 369
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.53 E-value=12 Score=38.37 Aligned_cols=135 Identities=17% Similarity=0.105 Sum_probs=95.3
Q ss_pred CCCHhHHHHHHHHhhcc--CcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHhCC-CCC--cHHH
Q 005802 490 KPDAVTFVAILSAFRHC--GSVEMGEKYFNSMTADYKISPETDHYACMIDLYG-RANQLEKAIEFMKSIP-TEE--DAVI 563 (676)
Q Consensus 490 ~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~-~~~--~~~~ 563 (676)
-|+..+...++.-...- ...+-+-.++..|.. .+.|--.+.+ +...|. -.|+...|.+.+..+. ..| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 36666666555433322 233445556665632 3444433333 233444 4689999999988776 455 3345
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 564 LGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 564 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
+-.|.+...+.|....|-.++.+.+.+.-..|-++..++++|....+.+.|++.++.+.+..++
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC
Confidence 6677788888899999999999999998777889999999999999999999999998876554
No 370
>PRK10941 hypothetical protein; Provisional
Probab=74.19 E-value=19 Score=33.77 Aligned_cols=66 Identities=9% Similarity=-0.028 Sum_probs=52.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
.+.+-.+|.+.++++.|+...+.+. .+.++.-+.--+-.|.+.|.+..|..-++..++..|+++.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3456677788888888888888877 55567777777778888899999999999988888887754
No 371
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.10 E-value=73 Score=29.34 Aligned_cols=197 Identities=12% Similarity=0.119 Sum_probs=103.3
Q ss_pred CCCchhHHHHHHH-HHHcCChHHHHHHHHHHHHcCCCCCC--HhHHHHHHHHHHhhcChhHHHHHHHHHHHc---CC--C
Q 005802 353 EKNVVVWTALFSG-YVKAQNCEALFDLLSEFVTKEGVVTD--ALILVILLGACALQAALHPGKEIHAYILRM---GV--Q 424 (676)
Q Consensus 353 ~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~ 424 (676)
+||+..-|..-.+ -.+..++++|+.-|++.+...|-+.+ ...+..++....+.+++++....+.++... .+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 3565543332221 12345788899999888666654433 344556677777888888877777665431 11 2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCCc----chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC----
Q 005802 425 MDKKLISTLVDMYSKCGNMTYAEIIFQNFI-----ERDL----VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP---- 491 (676)
Q Consensus 425 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---- 491 (676)
-+....+++++.-..+.+.+-...+++.-. ..|. .|-..|...|...+.+....+++.++...-..-
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 344556666666665555554444444321 1121 233445666666667777777776666532111
Q ss_pred CH-------hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHH----HHHhhcCCHHHHH
Q 005802 492 DA-------VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMI----DLYGRANQLEKAI 549 (676)
Q Consensus 492 ~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~----~~~~~~g~~~~A~ 549 (676)
|. ..|..=++.|....+-.....++++...-..-.|.+.+...+- ..+.+.|++++|-
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 11 1344445555555555555666665543223334444433322 2234456666553
No 372
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.54 E-value=79 Score=29.47 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=29.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhH-------HHHHHHHHHhhcChhH
Q 005802 362 LFSGYVKAQNCEALFDLLSEFVTKEGVVTDALI-------LVILLGACALQAALHP 410 (676)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~-------~~~ll~~~~~~~~~~~ 410 (676)
+.+...+.+++++|+..+.+. ...|+..+..+ ...+...|.+.|+...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~i-L~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRI-LGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHH-hcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 344556778888888888887 66676666544 3344445555555443
No 373
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=72.58 E-value=7.6 Score=38.73 Aligned_cols=87 Identities=10% Similarity=0.032 Sum_probs=57.1
Q ss_pred HHHhhcCCHHHHHHHHHhCC-CCCcHHHH-HHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHH
Q 005802 537 DLYGRANQLEKAIEFMKSIP-TEEDAVIL-GSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEM 614 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 614 (676)
.-+.+.+.++.|+.++.++. ..|+-..+ ..=..++.+.+++..|+.-+.++++.+|.....|..-+.++.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 33445566677777766666 44433322 22224666777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHh
Q 005802 615 GRIRKQMRG 623 (676)
Q Consensus 615 ~~~~~~~~~ 623 (676)
...++....
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 777776554
No 374
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.37 E-value=31 Score=34.48 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=97.1
Q ss_pred HHHHHhcCCHHHHHH-HHhhcC--CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHH
Q 005802 434 VDMYSKCGNMTYAEI-IFQNFI--ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVE 510 (676)
Q Consensus 434 ~~~~~~~g~~~~A~~-~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 510 (676)
|.--...|++-.|.+ ++.-+. +.++.........+...|+++.+.+.+...... +.....+..++++.....|+++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 334445677777754 444443 224444444445567789999999988766543 4556778889999999999999
Q ss_pred HHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 005802 511 MGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLL 588 (676)
Q Consensus 511 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 588 (676)
.|...-..|... .+. ++.+...-.-.--..|-++++...+++.. .+|...-|-.++..-.--++...--+.|...+
T Consensus 375 ~a~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~ 452 (831)
T PRK15180 375 EALSTAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGNAFSEAFHAGI 452 (831)
T ss_pred HHHHHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcchHHHHHHhhh
Confidence 999999999764 332 33333333333345678899999998877 55666666666654333333333344444444
Q ss_pred cc
Q 005802 589 RL 590 (676)
Q Consensus 589 ~~ 590 (676)
+.
T Consensus 453 ~~ 454 (831)
T PRK15180 453 QS 454 (831)
T ss_pred hh
Confidence 44
No 375
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=72.28 E-value=1.1e+02 Score=30.46 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=43.8
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCC-CCccHHHHHHHH-HhcCChhHHHHHHHHHHh
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGN-NKARYVQLANVY-AAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~ 623 (676)
.+..+.+.|-+..|.+..+-+..++|. ||-....+++.| .+.++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 334677889999999999999999998 776666666665 567888888888877654
No 376
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=71.35 E-value=6.1 Score=22.28 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=22.8
Q ss_pred CCHhHHHHHHHHHHcccCCCCccHHHHHHH
Q 005802 575 RNAELAGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 575 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
|+.+.+..++++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467788888888888888877777766543
No 377
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.69 E-value=14 Score=28.04 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=37.9
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCC---------CccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNN---------KARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
..+.||+..|.+.+.+..+....+ ......++.+....|++++|...+++..+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456778888877777777662221 123455777788899999999999888753
No 378
>PF13934 ELYS: Nuclear pore complex assembly
Probab=70.49 E-value=25 Score=32.11 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=43.5
Q ss_pred cHHHHHHHHHh--CCCchHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHhccCCCC--CcccHHHHHHHHHhcCC
Q 005802 27 TTNQLIHIYSK--HNLLRESRKLFDEMPERNVFSWNTIISACIKSHDLKQARSLFDSSPHK--DLVTYNSMLCGYINAEG 102 (676)
Q Consensus 27 ~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~~~ 102 (676)
.|..++++++. .+++++|.+.+..-.-+ ..--..++.++...|+...|..++..+..| +...-..++.. ..++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~ 155 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGL 155 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCC
Confidence 44556666654 35566666655332111 122234677777777887777777765532 11122233333 44455
Q ss_pred ChhHHHHHHHHh
Q 005802 103 YEADALKLFIEM 114 (676)
Q Consensus 103 ~~~~a~~~~~~m 114 (676)
.. +|+..-...
T Consensus 156 v~-EAf~~~R~~ 166 (226)
T PF13934_consen 156 VT-EAFSFQRSY 166 (226)
T ss_pred HH-HHHHHHHhC
Confidence 55 665554443
No 379
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.26 E-value=68 Score=32.12 Aligned_cols=53 Identities=9% Similarity=0.138 Sum_probs=31.9
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHh--HHHHHHHHhhc--cCcHHHHHHHHHHchh
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKPDAV--TFVAILSAFRH--CGSVEMGEKYFNSMTA 521 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~--~g~~~~a~~~~~~~~~ 521 (676)
+.+.+++..|.++++.+... ++++.. .+..+..+|.. .-++.+|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34667777777777777775 444443 33344444432 4566777777776654
No 380
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=69.84 E-value=28 Score=28.28 Aligned_cols=71 Identities=11% Similarity=-0.002 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHhhcCCH---HHHHHHHHhCC--CCC--cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc
Q 005802 526 SPETDHYACMIDLYGRANQL---EKAIEFMKSIP--TEE--DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA 596 (676)
Q Consensus 526 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 596 (676)
.++..+--.+..++.+..+. .+.+.++++.. ..| .....-.|.-++.+.++|+.+.++++.+++..|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 45555556677777766543 44556666655 122 2334455666888999999999999999999888653
No 381
>PRK12798 chemotaxis protein; Reviewed
Probab=69.06 E-value=1.3e+02 Score=30.07 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=119.8
Q ss_pred cCCHHHHHHHHhhcCC----CCcchHHHHHHHH-HHcCChhHHHHHHHHHHHCCCCCCHh----HHHHHHHHhhccCcHH
Q 005802 440 CGNMTYAEIIFQNFIE----RDLVLYNVMIACY-AHHGHEEKAILLFEEMLEKGIKPDAV----TFVAILSAFRHCGSVE 510 (676)
Q Consensus 440 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~-~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~ 510 (676)
.|+.+++.+.+..+.. +....|-.|+.+- ....+...|+++|++..= .-|-.. ....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888889888888763 3455677777654 445689999999998765 345432 3333344567889999
Q ss_pred HHHHHHHHchhhcCCCCCHHHHHH-HHHHHhhc---CCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 005802 511 MGEKYFNSMTADYKISPETDHYAC-MIDLYGRA---NQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEK 586 (676)
Q Consensus 511 ~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 586 (676)
++..+-..-..+|...|=..-|.. +..++.+. -..+.-..++..|...-....|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988887777777666666444333 33333333 34455566666665333455777888888899999999999999
Q ss_pred HHcccCCCCccHHHHHHHHHh-----cCChhHHHHHHHHHH
Q 005802 587 LLRLEGNNKARYVQLANVYAA-----EGNWAEMGRIRKQMR 622 (676)
Q Consensus 587 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~ 622 (676)
+..+... ...-...+..|.. ..++++|.+.++.+.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 9998533 3444555555544 355777777666543
No 382
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=69.01 E-value=1.7e+02 Score=31.52 Aligned_cols=62 Identities=23% Similarity=0.214 Sum_probs=33.7
Q ss_pred HHHHHHHHHccCC-cHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCC
Q 005802 128 VTSTLNLCVKLLN-VGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEE 189 (676)
Q Consensus 128 ~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 189 (676)
.+.++..+..... .+.-.++++.+.+.-.+...--|..+.++|.-..+.+.+..+++++.++
T Consensus 177 ~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 177 LTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 3344444433332 4444455555555433322333556777777777777777777766653
No 383
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=68.00 E-value=73 Score=29.35 Aligned_cols=162 Identities=12% Similarity=0.063 Sum_probs=82.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc-cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhc
Q 005802 464 MIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRH-CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRA 542 (676)
Q Consensus 464 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 542 (676)
++...-+.|+++++...++++...+...+..--+.|-.+|-. .|....+++++..+..+..-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 556677788899999999998887766666655555555532 34555566666665443111111 2222333333221
Q ss_pred ------CCHHHHHHHHHhCCC----CCcHH-HHHHHHHHH----H-------HhCCHhHHHHHHHHHHcc-----cCCCC
Q 005802 543 ------NQLEKAIEFMKSIPT----EEDAV-ILGSFLNVC----R-------LNRNAELAGEAEEKLLRL-----EGNNK 595 (676)
Q Consensus 543 ------g~~~~A~~~~~~~~~----~~~~~-~~~~l~~~~----~-------~~~~~~~a~~~~~~~~~~-----~p~~~ 595 (676)
.--.+.+.+++.... .+... .|..+-.-| + +..-.+.|...|+++.+. .|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 122455666666541 11111 111111111 1 111246777788877765 45444
Q ss_pred ccHHHHH----HHHHhcCChhHHHHHHHHHHhCCC
Q 005802 596 ARYVQLA----NVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 596 ~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
....... -.|.-.|+.++|.++.+...+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 3222111 123557999999998888766544
No 384
>PF13934 ELYS: Nuclear pore complex assembly
Probab=67.97 E-value=98 Score=28.28 Aligned_cols=71 Identities=17% Similarity=0.262 Sum_probs=37.5
Q ss_pred HHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 005802 499 ILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRL 573 (676)
Q Consensus 499 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 573 (676)
++.++...|+.+.|..+++.+.. .-.+......++.. ..++...||..+-+.....-....+..++..|..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 55555556777777777776531 11122233333333 5557777777776665532223455555555543
No 385
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.91 E-value=52 Score=25.10 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=38.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHH
Q 005802 434 VDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTF 496 (676)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 496 (676)
+..+...|++++|..+.+...-||...|-+|-. .+.|-.+.+...+.+|..+| .|....|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 344566778888888887777777777766543 35566666666666776665 3444443
No 386
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.41 E-value=29 Score=28.17 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcc--cCCCCccHHHHHHHHHhcCChhHHHHHHHH
Q 005802 579 LAGEAEEKLLRL--EGNNKARYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 579 ~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
.+..+|+.+... ....+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 777777777654 555677888888889999999999988875
No 387
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.80 E-value=15 Score=23.04 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=13.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC
Q 005802 464 MIACYAHHGHEEKAILLFEEMLEK 487 (676)
Q Consensus 464 l~~~~~~~~~~~~A~~~~~~m~~~ 487 (676)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555556666666666555543
No 388
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.69 E-value=42 Score=26.83 Aligned_cols=60 Identities=10% Similarity=0.224 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 005802 476 KAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMID 537 (676)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 537 (676)
+..+-++.+....+.|++......+++|.+.+|+..|.++|+.++.+ ..+....|..++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 44555666777788999999999999999999999999999988653 3344445655554
No 389
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.10 E-value=31 Score=28.58 Aligned_cols=81 Identities=11% Similarity=0.145 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCC---------CCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhH
Q 005802 58 SWNTIISACIKSHDLKQARSLFDSSP---------HKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTV 128 (676)
Q Consensus 58 ~~~~ll~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~ 128 (676)
..|+++.-....+++.....+++.+. ..+...|++++.+..+.....--+..+|+.|.+ .+.+++..-|
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~--~~~~~t~~dy 118 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK--NDIEFTPSDY 118 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH--cCCCCCHHHH
Confidence 46677777777777777777776654 245667889999887666534367888888887 6788888889
Q ss_pred HHHHHHHHccCC
Q 005802 129 TSTLNLCVKLLN 140 (676)
Q Consensus 129 ~~ll~~~~~~~~ 140 (676)
..++.++.+...
T Consensus 119 ~~li~~~l~g~~ 130 (145)
T PF13762_consen 119 SCLIKAALRGYF 130 (145)
T ss_pred HHHHHHHHcCCC
Confidence 989988876533
No 390
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=64.16 E-value=1.3e+02 Score=28.42 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=13.8
Q ss_pred HHHHHHHHh-CCCchHHHHHhccC
Q 005802 29 NQLIHIYSK-HNLLRESRKLFDEM 51 (676)
Q Consensus 29 ~~l~~~~~~-~g~~~~a~~~~~~~ 51 (676)
-.+++.|-. .|+.+...+.++..
T Consensus 33 da~vq~~~~~~gdle~vak~ldss 56 (412)
T KOG2297|consen 33 DAVVQGLEDNAGDLELVAKSLDSS 56 (412)
T ss_pred HHHHHHHHhcCccHHHHHHHHHhc
Confidence 345555543 46777777776655
No 391
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.91 E-value=42 Score=31.99 Aligned_cols=93 Identities=15% Similarity=0.052 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcH----HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHH
Q 005802 530 DHYACMIDLYGRANQLEKAIEFMKSIP--TEEDA----VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLAN 603 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 603 (676)
..|.-=..-|.+..++..|...|.+.. ..+|+ +.|..=..+-...|++-.++.-..+++..+|.+...|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 344444566888899999999998876 22333 344444445567799999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 005802 604 VYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~ 622 (676)
++....++++|....++..
T Consensus 162 c~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 9999999888887776553
No 392
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=63.89 E-value=1.3e+02 Score=29.73 Aligned_cols=64 Identities=11% Similarity=-0.065 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCc--HHHH----HHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 530 DHYACMIDLYGRANQLEKAIEFMKSIPTEED--AVIL----GSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
...++|++.|...+.++.|.++..+...+.. ..-| -.++..-..+.+|..|.+.+-.+....|.
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 3445555555556666666666655551110 0011 11122333455556665555555555553
No 393
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=63.00 E-value=1.4e+02 Score=28.44 Aligned_cols=147 Identities=10% Similarity=-0.050 Sum_probs=78.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc----cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcC-----
Q 005802 473 HEEKAILLFEEMLEKGIKPDAVTFVAILSAFRH----CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRAN----- 543 (676)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----- 543 (676)
+..+|.++|..+-+.|..+-.. .|...|.. ..+..+|..+++..... |..+-......+...|...+
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~---~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALF---NLGLMYANGRGVPLDLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHH---hHHHHHhcCCCcccCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcc
Confidence 4566666666665555322222 12222222 33667777777777554 44332222333334333321
Q ss_pred --CHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC--------
Q 005802 544 --QLEKAIEFMKSIPTEEDAVILGSFLNVCRL----NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG-------- 609 (676)
Q Consensus 544 --~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 609 (676)
+...|..++.++-...++.....+...|.. ..+.++|...|+++-+... ......++ .+...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 168 AYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred cHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 223567777666533344444445444422 3477888888888877655 45555565 555544
Q ss_pred -------ChhHHHHHHHHHHhCCC
Q 005802 610 -------NWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 610 -------~~~~A~~~~~~~~~~~~ 626 (676)
+...|...+......+.
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCC
Confidence 66667777766665544
No 394
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.76 E-value=48 Score=27.51 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=38.6
Q ss_pred CCCeeeHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCC
Q 005802 221 LNDAVSWNTLISGYVQNGD-AEEGLKLFVRMGENGVRWNEHTFASALSACCGLR 273 (676)
Q Consensus 221 ~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 273 (676)
..+..+|+.++.+..+... --.+..+|.-|++.+.+++..-|..++.++.+-.
T Consensus 76 ~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 76 WLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred hcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Confidence 3456678888888866655 4456777888887778888888888888876543
No 395
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=62.73 E-value=1.2e+02 Score=28.46 Aligned_cols=73 Identities=10% Similarity=0.092 Sum_probs=35.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHH-cCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 005802 363 FSGYVKAQNCEALFDLLSEFVT-KEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMY 437 (676)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~m~~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (676)
|++++..|+|.+++.+.-+-.+ ...++| .....-|-.|.+.+.+..+.++-..-....-.-+..-|..++..|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 6778888888887776654311 112222 233333334555555555555444333322222223344444444
No 396
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=62.57 E-value=15 Score=32.88 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=47.4
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
....+|.+.+.+++.++.++.|.....|..++..-.+.|+++.|.+.+++..+..+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 346678888888888888888888888888888888888888888888888876654
No 397
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.36 E-value=65 Score=23.91 Aligned_cols=28 Identities=7% Similarity=0.198 Sum_probs=12.5
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 005802 343 EARRHFDSLTEKNVVVWTALFSGYVKAQN 371 (676)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (676)
.|.+++..+. +.+..|..++.++...|.
T Consensus 54 ~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 54 GARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred HHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 3334444444 444444444444444443
No 398
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=61.25 E-value=3e+02 Score=31.60 Aligned_cols=158 Identities=6% Similarity=-0.067 Sum_probs=68.5
Q ss_pred hhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHH-HHHHHHHchhhcCCCCCH
Q 005802 451 QNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEM-GEKYFNSMTADYKISPET 529 (676)
Q Consensus 451 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~p~~ 529 (676)
..+..+|...-...+.++.+.+..+. +.... -.++...-.....++...+..+. +...+..+.. .++.
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~----D~d~ 789 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGGAPAGDAVRALTG----DPDP 789 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc----CCCH
Confidence 33444455444444555554433221 11121 12344444444445544443322 2233333322 2445
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC
Q 005802 530 DHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG 609 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 609 (676)
..-...+.++.+.|..+.+...+..+...++..+-...+.++...+. +++...+..+++ +| +...-..-+.++.+.+
T Consensus 790 ~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-D~-~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 790 LVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT-DP-HLDVRKAAVLALTRWP 866 (897)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc-CC-CHHHHHHHHHHHhccC
Confidence 55556666666666554443444444444555555555555555543 334444444432 12 2333334444444432
Q ss_pred ChhHHHHHHHHHH
Q 005802 610 NWAEMGRIRKQMR 622 (676)
Q Consensus 610 ~~~~A~~~~~~~~ 622 (676)
.-.++...+..+.
T Consensus 867 ~~~~a~~~L~~al 879 (897)
T PRK13800 867 GDPAARDALTTAL 879 (897)
T ss_pred CCHHHHHHHHHHH
Confidence 2334444444443
No 399
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=60.88 E-value=1.6e+02 Score=28.28 Aligned_cols=146 Identities=13% Similarity=0.196 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc--cC----cHHHHHHHHHHchhhcCCC--CCHHHHHHHHHHHhhcCCH
Q 005802 474 EEKAILLFEEMLEKGIKPDAVTFVAILSAFRH--CG----SVEMGEKYFNSMTADYKIS--PETDHYACMIDLYGRANQL 545 (676)
Q Consensus 474 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~ 545 (676)
+++.+.+++.|.+.|++-+..+|.+....... .. ...+|..+++.|++.|.+- ++-.++..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45556788899999998887777653333222 22 3567899999998875442 333444444332 34443
Q ss_pred H----HHHHHHHhCC----CCCcH-HHHHHHHHHHHHhCC--HhHHHHHHHHHHcccCC-CCccHHHHHHHHHhcCChhH
Q 005802 546 E----KAIEFMKSIP----TEEDA-VILGSFLNVCRLNRN--AELAGEAEEKLLRLEGN-NKARYVQLANVYAAEGNWAE 613 (676)
Q Consensus 546 ~----~A~~~~~~~~----~~~~~-~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~ 613 (676)
+ ++..+++.+. .+.+. ..+..++..+....+ ..++..+++.+.+..-. ....|..+|-+-.-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 3 3444444443 23333 333333333322222 44677777777766322 33345555544444444434
Q ss_pred HHHHHHHH
Q 005802 614 MGRIRKQM 621 (676)
Q Consensus 614 A~~~~~~~ 621 (676)
..+.+.++
T Consensus 236 ~~~~i~ev 243 (297)
T PF13170_consen 236 IVEEIKEV 243 (297)
T ss_pred HHHHHHHH
Confidence 44444443
No 400
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=60.67 E-value=28 Score=20.72 Aligned_cols=17 Identities=6% Similarity=-0.246 Sum_probs=7.7
Q ss_pred HHHHHHHhCCHhHHHHH
Q 005802 567 FLNVCRLNRNAELAGEA 583 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~ 583 (676)
+...+...|++++|+.+
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33444445555555555
No 401
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.15 E-value=1e+02 Score=28.13 Aligned_cols=82 Identities=10% Similarity=-0.036 Sum_probs=38.9
Q ss_pred cCcHHHHHHHHHHchhhcCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHH-HHHHHHHHhCCHhHHHH
Q 005802 506 CGSVEMGEKYFNSMTADYKISPET-DHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILG-SFLNVCRLNRNAELAGE 582 (676)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~-~l~~~~~~~~~~~~a~~ 582 (676)
...++.|...|.+.+ -+.|+. .-|..=+.++.+..+++.+..--.+.. ..|+..--. .+.........++.|+.
T Consensus 23 ~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 344455555444443 334553 333444555555555555544444433 334333222 23334455556666666
Q ss_pred HHHHHHcc
Q 005802 583 AEEKLLRL 590 (676)
Q Consensus 583 ~~~~~~~~ 590 (676)
.+.++..+
T Consensus 100 ~Lqra~sl 107 (284)
T KOG4642|consen 100 VLQRAYSL 107 (284)
T ss_pred HHHHHHHH
Confidence 66666443
No 402
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=59.86 E-value=2.6e+02 Score=30.36 Aligned_cols=187 Identities=13% Similarity=0.070 Sum_probs=90.3
Q ss_pred CCCeeeHHHHHHHHHhcCChhHHHHHHHHHH-hCCCCCc--HhHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCCCchh-
Q 005802 221 LNDAVSWNTLISGYVQNGDAEEGLKLFVRMG-ENGVRWN--EHTFASALSACC-GLRNVKCAKEIHSWVLKNGLISNPF- 295 (676)
Q Consensus 221 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~- 295 (676)
+.+...|..||.. |+..++... +..+.|. ..++..+...+. ...+++.|+..+++.....-.++..
T Consensus 27 ~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 3455566666653 566666666 3344443 234444455444 6788999998888765543332221
Q ss_pred ----HHHHHHHHHHhcCChHHHHHHHHhcCCC----CchhH----HHH-HHHHHhcCCHHHHHHHHhccCC-----CC--
Q 005802 296 ----VSSGIVDVYCKCENMNYAESMLLLKGVR----NSFSI----SSM-IVGYSLQGNMEEARRHFDSLTE-----KN-- 355 (676)
Q Consensus 296 ----~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~----~~l-i~~~~~~~~~~~a~~~~~~~~~-----~~-- 355 (676)
+...++..+.+.+... |...+++.... ....| .-+ +..+...++...|.+.++.+.. .+
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 2234556666665555 76666554431 11111 112 1112222566666666665542 11
Q ss_pred chhHHHHHHHH--HHcCChHHHHHHHHHHHHcCCC---------CCCHhHHHHHHHHHH--hhcChhHHHHHHHHH
Q 005802 356 VVVWTALFSGY--VKAQNCEALFDLLSEFVTKEGV---------VTDALILVILLGACA--LQAALHPGKEIHAYI 418 (676)
Q Consensus 356 ~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~---------~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 418 (676)
...+-.++.+. .+.+..+++++.++++ ..... .|...++..++..++ ..|+++.+...++.+
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~-~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRA-IAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12222333332 2345556666666655 22111 223344555555443 444544555544443
No 403
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=58.79 E-value=24 Score=33.01 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=24.2
Q ss_pred hcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 541 RANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
+.|+.++|..+|+.+. .+.++..+..++...-..++.-+|.+.|-+++...|.+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 3445555555554433 222333333333333334444445555555544444443
No 404
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=58.62 E-value=76 Score=23.84 Aligned_cols=63 Identities=14% Similarity=0.109 Sum_probs=39.4
Q ss_pred CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC--CccHHHHHHHHHhcCChh-HHHHHHHH
Q 005802 558 EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN--KARYVQLANVYAAEGNWA-EMGRIRKQ 620 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~A~~~~~~ 620 (676)
+.|......+...+...|+++.|++.+-.+++.+|+. ...-..|+.++...|.-+ -+.+..++
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRk 84 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRK 84 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 4455666777778888888888888888888776553 556677777777777643 44444443
No 405
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.36 E-value=1.6e+02 Score=30.78 Aligned_cols=160 Identities=13% Similarity=0.099 Sum_probs=82.5
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCC------------HhHHHHHHHHhhccCcHHHHHHHHHHchhh--------------
Q 005802 469 AHHGHEEKAILLFEEMLEKGIKPD------------AVTFVAILSAFRHCGSVEMGEKYFNSMTAD-------------- 522 (676)
Q Consensus 469 ~~~~~~~~A~~~~~~m~~~g~~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------------- 522 (676)
.....+++|...|.-.+.. ..|+ ..+...+...|...|+.+-|..++++..=.
T Consensus 249 ~hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred ecchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 3445577777776655542 2222 123344445677778888777777764210
Q ss_pred -----cCCCCCHHHHHHH---HHHHhhcCCHHHHHHHHHhCC-CCC--cHHHHHHHHHHH-HHhCCHhHHHHHHHHHHcc
Q 005802 523 -----YKISPETDHYACM---IDLYGRANQLEKAIEFMKSIP-TEE--DAVILGSFLNVC-RLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 523 -----~~~~p~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~ 590 (676)
|...-|...|.+| +..+.+.|-+..|.++.+-+. ..| ||.....++..| .+.++|+--+++++.....
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 0111123334333 344566777777777766555 222 566666666655 3566777777777666433
Q ss_pred -----cCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCc
Q 005802 591 -----EGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAG 631 (676)
Q Consensus 591 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 631 (676)
-|+ -..-..|+..|.+.. -+.+.+....+..+.++..|+
T Consensus 408 n~l~~~PN-~~yS~AlA~f~l~~~-~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 408 NKLSQLPN-FGYSLALARFFLRKN-EEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred ccHhhcCC-chHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHhCcH
Confidence 222 222233334444333 333444444444444555553
No 406
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.21 E-value=59 Score=28.10 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=20.0
Q ss_pred HHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHH
Q 005802 569 NVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
..|.+.|.+++|.+++++..+ +|++...-..|..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 356666666666666666666 55554443333333
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.48 E-value=37 Score=30.11 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005802 526 SPETDHYACMIDLYGRANQLEKAIEFMKSI 555 (676)
Q Consensus 526 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 555 (676)
.|++..|..++.++...|+.++|.++.+++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 408
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.40 E-value=47 Score=21.33 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=26.0
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILS 501 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 501 (676)
..+.|-..++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3566777788888888888888888777777664
No 409
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=55.05 E-value=5.4e+02 Score=32.54 Aligned_cols=65 Identities=9% Similarity=-0.087 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 560 DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
-..+|-...+.++..|.++.|...+-.+.+..+ +..+.-.+..+...|+...|+.++++-.+...
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 455788888889999999999999888887764 57788889999999999999999998876543
No 410
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.04 E-value=69 Score=23.76 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHhcCChHHH
Q 005802 10 LICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISACIKSHDLKQA 75 (676)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 75 (676)
.++++...+.|+- +......+-.+-...|+.+.|+++++.++ ..+..|...+.++...|.-.-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3445555555522 22222333222224456666666666666 5555666666666555554433
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.37 E-value=47 Score=29.39 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=32.3
Q ss_pred CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccC
Q 005802 557 TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEG 592 (676)
Q Consensus 557 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 592 (676)
..|++.++..++.++...|+.++|.+...++....|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 578999999999999999999999999999998888
No 412
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=53.11 E-value=1.8e+02 Score=27.88 Aligned_cols=19 Identities=16% Similarity=0.020 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcccCCCCcc
Q 005802 579 LAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~~~~~ 597 (676)
.|.+...++.+.+|.-|..
T Consensus 380 ~AvEAihRAvEFNPHVPkY 398 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKY 398 (556)
T ss_pred HHHHHHHHHhhcCCCCcHH
Confidence 5677777888888875543
No 413
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=52.78 E-value=29 Score=20.99 Aligned_cols=28 Identities=11% Similarity=0.052 Sum_probs=23.2
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 596 ARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.+|..|+.+-...++|++|.+-++...+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678899999999999999888877654
No 414
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=52.07 E-value=95 Score=25.09 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=28.6
Q ss_pred HHHHHHHHHcc--cCCCCccHHHHHHHHHhcCChhHHHHHHH
Q 005802 580 AGEAEEKLLRL--EGNNKARYVQLANVYAAEGNWAEMGRIRK 619 (676)
Q Consensus 580 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 619 (676)
...+|..+... ....+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666544 44456677788888888888888888875
No 415
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=51.70 E-value=23 Score=31.74 Aligned_cols=54 Identities=19% Similarity=0.100 Sum_probs=26.1
Q ss_pred hcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 541 RANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
+.++.+.|.+++..+. .+.....|-.+...--+.|+++.|.+.+++..+++|++
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3444444444444444 22234444444444455555555555555555555544
No 416
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=51.53 E-value=1.1e+02 Score=28.56 Aligned_cols=58 Identities=17% Similarity=0.053 Sum_probs=48.0
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
+=.++...++++.|....++.+..+|.++.-...-|.+|.+.|-+.-|++-++...+.
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 3346778888999999999999999998888888888999999988888888876554
No 417
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.48 E-value=72 Score=25.56 Aligned_cols=47 Identities=6% Similarity=0.090 Sum_probs=38.8
Q ss_pred HHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHh
Q 005802 106 DALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKT 154 (676)
Q Consensus 106 ~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 154 (676)
+..+-++.+.. ..+.|++......+++|.+.+|+..|..+++-++..
T Consensus 67 EvrkglN~l~~--yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFD--YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhc--cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55556666666 778899999999999999999999999999888766
No 418
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=49.66 E-value=1.7e+02 Score=30.37 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC
Q 005802 431 STLVDMYSKCGNMTYAEIIFQNFI 454 (676)
Q Consensus 431 ~~l~~~~~~~g~~~~A~~~~~~~~ 454 (676)
..|+.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 356777888888888888888775
No 419
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.51 E-value=4.7e+02 Score=30.25 Aligned_cols=18 Identities=28% Similarity=0.194 Sum_probs=11.4
Q ss_pred HHHhcCCHHHHHHHHhhc
Q 005802 436 MYSKCGNMTYAEIIFQNF 453 (676)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~ 453 (676)
+|..+|+..+|...|.+.
T Consensus 929 ~yl~tge~~kAl~cF~~a 946 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSA 946 (1480)
T ss_pred eeecCCchHHHHHHHHHH
Confidence 455666777776666554
No 420
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.13 E-value=32 Score=23.62 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=11.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSI 555 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~ 555 (676)
.-.++.+|...|++++|.++++++
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334455555555555555555443
No 421
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=48.94 E-value=69 Score=29.79 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=15.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 533 ACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 533 ~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
..+...|.+.|++++|.++|+.+.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345666667777777777776654
No 422
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.73 E-value=68 Score=27.76 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=10.7
Q ss_pred HHhhhccchHHHHHhhhhcCCC
Q 005802 168 DMYSKCRCYEEACRVFEGCTEE 189 (676)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~ 189 (676)
-.|.+.|.+++|.++++....+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhcC
Confidence 3444555555555555544443
No 423
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.61 E-value=68 Score=24.26 Aligned_cols=21 Identities=33% Similarity=0.210 Sum_probs=11.2
Q ss_pred HHHHhCCHhHHHHHHHHHHcc
Q 005802 570 VCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 570 ~~~~~~~~~~a~~~~~~~~~~ 590 (676)
.....|+.++|...+++++++
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 344555555555555555544
No 424
>PRK12798 chemotaxis protein; Reviewed
Probab=46.48 E-value=3.2e+02 Score=27.46 Aligned_cols=176 Identities=15% Similarity=0.076 Sum_probs=104.9
Q ss_pred HhCCCchHHHHHhccCCCCCcchHHHHHHHH--HhcCChHHHHHHhccCCC----CCcccHHHHHHHHHhcCCChhHHHH
Q 005802 36 SKHNLLRESRKLFDEMPERNVFSWNTIISAC--IKSHDLKQARSLFDSSPH----KDLVTYNSMLCGYINAEGYEADALK 109 (676)
Q Consensus 36 ~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~~a~~ 109 (676)
...|++.-...++..-..++.. +.++.+. .-.|+..+|.+.|..+.. +....|-.|+.+-.-.+.....|+.
T Consensus 92 lSGGnP~vlr~L~~~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~ 169 (421)
T PRK12798 92 LSGGNPATLRKLLARDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALK 169 (421)
T ss_pred hcCCCHHHHHHHHHcCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHH
Confidence 3556666666666554443332 1222222 235899999999988762 4556677777776666555559999
Q ss_pred HHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCc------hhhHHHHHhhhccchHHHHHhh
Q 005802 110 LFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGF------AVSSLIDMYSKCRCYEEACRVF 183 (676)
Q Consensus 110 ~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~ 183 (676)
+|++.+-.-.|.-........-+-.....|+.+++..+-......-. .+.+ -|...+..+....+++.-..++
T Consensus 170 ~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~-~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~l 248 (421)
T PRK12798 170 LLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFR-HSPYASQFAQRFVDLVVRLDDEIRDARLVEIL 248 (421)
T ss_pred HHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 99988652133333444566666677888999887776666655411 1122 1222333333444555555666
Q ss_pred hhcCCCCchhhHHHHHHHHHhcCChhHHHHH
Q 005802 184 EGCTEEVNLISKNAMVAACCREGEMEMALKT 214 (676)
Q Consensus 184 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 214 (676)
..|........|-.+.+.-.-.|+.+-|.-.
T Consensus 249 s~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 249 SFMDPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HhcCchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 6666555566777777777777776665433
No 425
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.47 E-value=34 Score=23.49 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchh
Q 005802 474 EEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTA 521 (676)
Q Consensus 474 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 521 (676)
.+...++++.+.. .+-|-.....++.++...|++++|.++++.+..
T Consensus 6 ~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444554443 233445555677788888888888888877754
No 426
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=46.43 E-value=4.1e+02 Score=28.62 Aligned_cols=58 Identities=7% Similarity=-0.055 Sum_probs=32.1
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHhccCCCCC-cccHHHHHHHHHhcCCChhHHHHHHHHhH
Q 005802 55 NVFSWNTIISACIKSHDLKQARSLFDSSPHKD-LVTYNSMLCGYINAEGYEADALKLFIEMQ 115 (676)
Q Consensus 55 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~ 115 (676)
....++.+++.+ |.=+.+.-..+++.+.. . ...|..+++++...|-.. ...-+.+.+.
T Consensus 309 ~~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~-a~~~i~~~i~ 367 (574)
T smart00638 309 AAAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPP-ALKFIKQWIK 367 (574)
T ss_pred hHHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHH
Confidence 334555555544 33445555555555443 3 566777777777776665 4444444444
No 427
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=46.37 E-value=2.9e+02 Score=26.94 Aligned_cols=87 Identities=15% Similarity=0.269 Sum_probs=41.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhH-HHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHH
Q 005802 433 LVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEK-AILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEM 511 (676)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 511 (676)
+.+.++|.++.+.+..+-+.+..-......++..++-...-.+. +..+++.+... ||......++++.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 34444554444444444444443333344444444443332222 22333333332 677777777777776655555
Q ss_pred HHHHHHHchhh
Q 005802 512 GEKYFNSMTAD 522 (676)
Q Consensus 512 a~~~~~~~~~~ 522 (676)
....+..+...
T Consensus 249 ~~~~i~~~L~~ 259 (340)
T PF12069_consen 249 VAILIDALLQS 259 (340)
T ss_pred HHHHHHHHhcC
Confidence 55545555443
No 428
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.31 E-value=65 Score=24.45 Aligned_cols=41 Identities=15% Similarity=0.016 Sum_probs=22.2
Q ss_pred HHHHHHHHcc-cCCCCccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 581 GEAEEKLLRL-EGNNKARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 581 ~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
++.++++... .+..|..+.+|+-+|.+.|+-+.|.+-|+.=
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetE 98 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETE 98 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHh
Confidence 3344444333 3334555666666666666666666665543
No 429
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=46.21 E-value=69 Score=26.55 Aligned_cols=62 Identities=15% Similarity=0.067 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCC
Q 005802 546 EKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 546 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 610 (676)
+.|.++.+-|. ...............|++..|..+.+.++..+|+|...-...+++|.+.|.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34445554443 233333444556788999999999999999999999888888888877654
No 430
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=46.15 E-value=1.7e+02 Score=33.86 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=83.5
Q ss_pred HhhccCcHHHHHH------HHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC---------CCC-cHHHH
Q 005802 502 AFRHCGSVEMGEK------YFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP---------TEE-DAVIL 564 (676)
Q Consensus 502 ~~~~~g~~~~a~~------~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~~ 564 (676)
.....|.+.++.+ ++...-. -..|+ ...|..|...+.+.|+.++|+.+-.+.. ..| +...+
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~--~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMG--VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhh--hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 3444566666666 5553221 22344 7788999999999999999998866654 122 23345
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHcc--------cCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 565 GSFLNVCRLNRNAELAGEAEEKLLRL--------EGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 565 ~~l~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
..+.-.+...++...|...+.++.++ .|.-..++..+..++...++++.|.++++.+..
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55555666777888888888887765 344445567777777788999999999999987
No 431
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=46.09 E-value=84 Score=29.51 Aligned_cols=57 Identities=11% Similarity=-0.031 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLL 588 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 588 (676)
++.....|..+|.+.+|.++.++.. .+-+...+..++..+...||--.+...++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445566777777777777777766 34466666677777777777555555555443
No 432
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.07 E-value=79 Score=20.29 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=18.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 005802 235 VQNGDAEEGLKLFVRMGENGVRWNEHTFASALS 267 (676)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 267 (676)
.+.|-..++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344555555566666666565555555554443
No 433
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=45.16 E-value=30 Score=32.41 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=38.9
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
..+.|+.++|..+|+... .+.|+ +.....+.......+++-+|-.++-++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HHhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 346799999999999887 55677 6666666666666677888888887776
No 434
>PHA02875 ankyrin repeat protein; Provisional
Probab=45.01 E-value=3.5e+02 Score=27.47 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=6.7
Q ss_pred HhcCChhHHHHHHh
Q 005802 203 CREGEMEMALKTFW 216 (676)
Q Consensus 203 ~~~g~~~~A~~~~~ 216 (676)
+..|+.+-+..+++
T Consensus 10 ~~~g~~~iv~~Ll~ 23 (413)
T PHA02875 10 ILFGELDIARRLLD 23 (413)
T ss_pred HHhCCHHHHHHHHH
Confidence 34455555444444
No 435
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=44.94 E-value=3.1e+02 Score=26.78 Aligned_cols=113 Identities=12% Similarity=0.142 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhh---cCCHHHHH
Q 005802 474 EEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGR---ANQLEKAI 549 (676)
Q Consensus 474 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~---~g~~~~A~ 549 (676)
.+.-+.++++.++.+ +-+......++..+.+..+.+...+-|+.+... .| +...|...++.... .-.+++..
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 566778899988873 234666777888888888999999999999865 34 47788887776554 23455666
Q ss_pred HHHHhCC-------CCC----------cHHHHH---HHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 550 EFMKSIP-------TEE----------DAVILG---SFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 550 ~~~~~~~-------~~~----------~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
++|.+.. ... +..... .+...+...|..+.|..++..+++.
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 6655443 111 112222 3333456889999999999999998
No 436
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=44.46 E-value=43 Score=24.35 Aligned_cols=49 Identities=20% Similarity=0.140 Sum_probs=29.4
Q ss_pred HHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 572 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
-..|+.+.|+..|++.+..--.-..+-.- .......|++|.++.++|..
T Consensus 19 dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~---~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 19 DEWGDKEQALAHYRKGLRELEEGIAVPVP---SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHcCCCCC---cccccHHHHHHHHHHHHHHH
Confidence 34577788888888777551110000000 23445679999999999875
No 437
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=44.33 E-value=3.2e+02 Score=27.27 Aligned_cols=54 Identities=19% Similarity=0.072 Sum_probs=30.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHH----HHHHHhhc--cCcHHHHHHHHHH
Q 005802 465 IACYAHHGHEEKAILLFEEMLEKGIKPDAVTFV----AILSAFRH--CGSVEMGEKYFNS 518 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~----~ll~~~~~--~g~~~~a~~~~~~ 518 (676)
+..+.+.+++..|.++|+++.+..+.|+...+. .+..+|.. .-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 345566777777777777777765555443322 22233322 3455666666654
No 438
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=44.23 E-value=1.1e+02 Score=24.28 Aligned_cols=23 Identities=4% Similarity=-0.028 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHH
Q 005802 530 DHYACMIDLYGRANQLEKAIEFM 552 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~ 552 (676)
..+..|..++...|++++++.--
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA 78 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSA 78 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHH
Confidence 34556667777777777765443
No 439
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.43 E-value=1.5e+02 Score=24.83 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 005802 245 KLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCEN 309 (676)
Q Consensus 245 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 309 (676)
++...+++.|++++..-. .++..+...++.-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 344555666766655432 3455555566667778888887777766655554444555555543
No 440
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.80 E-value=79 Score=33.19 Aligned_cols=58 Identities=9% Similarity=0.017 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.+.-+|....+.+.|.++++++.+.+|.++-.-..+..+....|+-++|+..+...+.
T Consensus 399 ~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 399 ALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 3333444555666666666666666666555555555555666666666665555543
No 441
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=42.69 E-value=72 Score=30.15 Aligned_cols=81 Identities=7% Similarity=-0.058 Sum_probs=61.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHH-HHHHHhCCHhHHHHHHHHHHcccCCCCccHHH
Q 005802 524 KISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFL-NVCRLNRNAELAGEAEEKLLRLEGNNKARYVQ 600 (676)
Q Consensus 524 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 600 (676)
.+.-|+..|...+....+.|.+.+.-.++.+.. .|.+...|-... .-+...++++.+..++.+.+.++|++|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 444568888888877777888888888887776 444666665422 24678899999999999999999999998776
Q ss_pred HHHH
Q 005802 601 LANV 604 (676)
Q Consensus 601 l~~~ 604 (676)
....
T Consensus 182 yfr~ 185 (435)
T COG5191 182 YFRM 185 (435)
T ss_pred HHHH
Confidence 5443
No 442
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=42.24 E-value=1.6e+02 Score=22.90 Aligned_cols=92 Identities=10% Similarity=0.015 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHhccCCCC
Q 005802 6 LKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISACIKSHDLKQARSLFDSSPHK 85 (676)
Q Consensus 6 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 85 (676)
.++|..+.+.+.+.+ .....+--.-+..+...|++++|...=.....||...|-+|-.. |.|-.+.+...|..+...
T Consensus 22 H~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Q ss_pred CcccHHHHHHHHHhc
Q 005802 86 DLVTYNSMLCGYINA 100 (676)
Q Consensus 86 ~~~~~~~ll~~~~~~ 100 (676)
+...-.....++...
T Consensus 99 g~~~~q~Fa~~~~~~ 113 (116)
T PF09477_consen 99 GSPELQAFAAGFREQ 113 (116)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
No 443
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.97 E-value=1.7e+02 Score=22.95 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLE 486 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 486 (676)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 567777777777777777777777765
No 444
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=41.43 E-value=1.3e+02 Score=23.58 Aligned_cols=26 Identities=4% Similarity=-0.028 Sum_probs=17.2
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCC
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISP 527 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p 527 (676)
.+...|+.-+|+++.+.+...+|-..
T Consensus 5 ~~~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 5 DYFARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred HHHHccCHHHHHHHHHHHHHHccCCC
Confidence 45566777777777777776654433
No 445
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=41.28 E-value=1.7e+02 Score=29.47 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=17.8
Q ss_pred CCccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 594 NKARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
..+++..+|-+|...+++.+|.+.+...
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666554
No 446
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=40.93 E-value=95 Score=22.98 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=22.1
Q ss_pred CCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChH
Q 005802 339 GNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCE 373 (676)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 373 (676)
.+.+++.++++.++.++..+|..+..++...|...
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 34555557777777777777777776666655443
No 447
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.84 E-value=3.3e+02 Score=26.02 Aligned_cols=73 Identities=15% Similarity=0.278 Sum_probs=48.0
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh----------cCCHHH
Q 005802 478 ILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR----------ANQLEK 547 (676)
Q Consensus 478 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~ 547 (676)
.++|+.|...++.|.-..|.-+.-.+.+.=.+.+.+.+|+.+..+ | .-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD----~--~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD----P--QRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC----h--hhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 457777778888888777666666666777778888888887653 2 224444444432 477777
Q ss_pred HHHHHHhCC
Q 005802 548 AIEFMKSIP 556 (676)
Q Consensus 548 A~~~~~~~~ 556 (676)
-+++++..+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777777654
No 448
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=40.57 E-value=35 Score=34.31 Aligned_cols=61 Identities=10% Similarity=-0.013 Sum_probs=52.6
Q ss_pred HHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 005802 568 LNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNR 628 (676)
Q Consensus 568 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 628 (676)
++.....++++.|+..+.++++++|+.+..|..-+.++.+.+++..|+.-..++.+..+..
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence 3455677899999999999999999999999999999999999999998888877765443
No 449
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=40.54 E-value=53 Score=30.96 Aligned_cols=78 Identities=6% Similarity=-0.063 Sum_probs=53.6
Q ss_pred CCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHH-HHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHH
Q 005802 490 KPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYAC-MIDLYGRANQLEKAIEFMKSIP--TEEDAVILGS 566 (676)
Q Consensus 490 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 566 (676)
.-|...|...+..-.+.|.+.+...++.+...++ +.|++.|-. ...-|...++++.+..+|.+.. .+.++..|..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh--P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH--PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 3455566666666667788889999999988653 233555533 3344667889999999998877 4556777766
Q ss_pred HHH
Q 005802 567 FLN 569 (676)
Q Consensus 567 l~~ 569 (676)
...
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 655
No 450
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.44 E-value=1.8e+02 Score=22.81 Aligned_cols=40 Identities=15% Similarity=0.337 Sum_probs=27.8
Q ss_pred ChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 207 EMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGE 252 (676)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 252 (676)
++++..+.+.+-. -|..|+..|...|..++|++++.+...
T Consensus 28 ~~~~~e~~L~~~~------~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKEHG------KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHHcC------CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3444444443333 578888888888888888888888766
No 451
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.60 E-value=57 Score=30.84 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHH
Q 005802 227 WNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTF 262 (676)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 262 (676)
||..|...++.|++++|+.++++.+..|+.--..||
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 556677777777777777777777766665444444
No 452
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.50 E-value=3.6e+02 Score=26.10 Aligned_cols=191 Identities=14% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHhcCC--hHHHHHHhccC-C-CCCcccHHHHHHHHHhcC-----CChhHHHHHHHH---------hHhccCCCCCC
Q 005802 63 ISACIKSHD--LKQARSLFDSS-P-HKDLVTYNSMLCGYINAE-----GYEADALKLFIE---------MQSADEHIRMD 124 (676)
Q Consensus 63 l~~~~~~g~--~~~A~~~~~~~-~-~~~~~~~~~ll~~~~~~~-----~~~~~a~~~~~~---------m~~~~~~~~p~ 124 (676)
+.++++.|. +..+..++..+ + +++...|..++..+.... ... .....|+. +.+ -|..++
T Consensus 45 ~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~--l~~~~~ 121 (324)
T PF11838_consen 45 LFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDE-ELQEAFRKFVRRLLEPLYER--LGWDPR 121 (324)
T ss_dssp HHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-H-HHHHHHHHHHHHHHHHHHHH----SSSS
T ss_pred HHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHH--cCCCCc
Q ss_pred --hhhHHHHHHHH-HccCC-----cHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHH
Q 005802 125 --EFTVTSTLNLC-VKLLN-----VGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKN 196 (676)
Q Consensus 125 --~~~~~~ll~~~-~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 196 (676)
.......++.. ..... .+.+.+.++.....+..++ . ..++....
T Consensus 122 ~~~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~-~---------------------------~i~~dlr~ 173 (324)
T PF11838_consen 122 PGEDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPE-S---------------------------SIPPDLRW 173 (324)
T ss_dssp --SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TT-S---------------------------TS-HHHHH
T ss_pred ccccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccc-c---------------------------ccchHHHH
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHH-hCCCCh
Q 005802 197 AMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSAC-CGLRNV 275 (676)
Q Consensus 197 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~ 275 (676)
.++....+.|..+.-..+++.....++......++.+++...+.+....+++.....+..++......+.... ......
T Consensus 174 ~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~ 253 (324)
T PF11838_consen 174 AVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGR 253 (324)
T ss_dssp HHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCH
T ss_pred HHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhH
Q ss_pred HHHHHHHHH
Q 005802 276 KCAKEIHSW 284 (676)
Q Consensus 276 ~~a~~~~~~ 284 (676)
+.+.+.+..
T Consensus 254 ~~~~~~~~~ 262 (324)
T PF11838_consen 254 DLAWEFFKE 262 (324)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 453
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.72 E-value=1.8e+02 Score=22.26 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=9.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHh
Q 005802 534 CMIDLYGRANQLEKAIEFMKS 554 (676)
Q Consensus 534 ~l~~~~~~~g~~~~A~~~~~~ 554 (676)
.|.-.|.+.|+.+.|++-|+.
T Consensus 77 hLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 77 HLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHhhcCChHHHHHHHHH
Confidence 344444445555555444443
No 454
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=38.03 E-value=3.6e+02 Score=25.61 Aligned_cols=117 Identities=9% Similarity=0.116 Sum_probs=76.1
Q ss_pred CChhHHHHHHHHHHH-CCCCCCHhHHHHHHHHhhc-c-CcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHH
Q 005802 472 GHEEKAILLFEEMLE-KGIKPDAVTFVAILSAFRH-C-GSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKA 548 (676)
Q Consensus 472 ~~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 548 (676)
..+.+|+.+|+.... ..+--|..+...+++.... . .....-.++.+-+...++-.++..+...++..+++.+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345666666663221 2244466666666665544 2 233334455555555556677778888888888888888888
Q ss_pred HHHHHhCC----CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 005802 549 IEFMKSIP----TEEDAVILGSFLNVCRLNRNAELAGEAEEKLL 588 (676)
Q Consensus 549 ~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 588 (676)
.+++.... ...|...|..++..-...||..-...+.++..
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~Gh 265 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGH 265 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCC
Confidence 88887766 22367788888888888888877777666544
No 455
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.81 E-value=5.1e+02 Score=27.32 Aligned_cols=154 Identities=12% Similarity=0.138 Sum_probs=69.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhh-ccCcHHHHHHHHHHchhh--cCCCCCHHHHHHHHHHHhh
Q 005802 465 IACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFR-HCGSVEMGEKYFNSMTAD--YKISPETDHYACMIDLYGR 541 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~--~~~~p~~~~~~~l~~~~~~ 541 (676)
|..+.+.|-+..|.++.+-+.+....-|+.....+|..|+ +..++.-.+++++..... ...-|+...-..|+..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 3445566666666666666665332223444445555442 455566666665554221 1233443333344555544
Q ss_pred cCC---HHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc--cCCCCccHHHHHHHHHhcCC----hh
Q 005802 542 ANQ---LEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL--EGNNKARYVQLANVYAAEGN----WA 612 (676)
Q Consensus 542 ~g~---~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~----~~ 612 (676)
... -+.|...+.++. +-.+..+..|+..+....+ |...--++..- .-.....+.+++.+|..... ..
T Consensus 429 ~~~~~~rqsa~~~l~qAl-~~~P~vl~eLld~~~l~~d---a~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~~~vWk~P 504 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQAL-KHHPLVLSELLDELLLGDD---ALTKDLKFDGSSAENSELPALMLLVKLYANRNEEVWKLP 504 (665)
T ss_pred cCChhhHHHHHHHHHHHH-HhCcHHHHHHHHhccCCch---hhhhhhcccccccccccchHHHHHHHHHHhhhhHhhcCh
Confidence 443 334444444443 2233344444444333211 11111111111 11124567788888876542 33
Q ss_pred HHHHHHHHHH
Q 005802 613 EMGRIRKQMR 622 (676)
Q Consensus 613 ~A~~~~~~~~ 622 (676)
++...++...
T Consensus 505 ~~ls~l~~~~ 514 (665)
T KOG2422|consen 505 DVLSFLESAY 514 (665)
T ss_pred HHHHHHHHHH
Confidence 4445554443
No 456
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=36.53 E-value=4.8e+02 Score=26.57 Aligned_cols=14 Identities=7% Similarity=-0.100 Sum_probs=5.9
Q ss_pred eHHHHHHHHHhcCC
Q 005802 226 SWNTLISGYVQNGD 239 (676)
Q Consensus 226 ~~~~li~~~~~~g~ 239 (676)
.-.....++...+.
T Consensus 102 vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 102 LCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHHHHhcCCc
Confidence 34444444444433
No 457
>cd08787 CARD_NOD2_1_CARD15 Caspase activation and recruitment domain of NOD2, repeat 1. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 1. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=36.32 E-value=66 Score=23.15 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHhcCCh-HHHHHHhccCCCCCcccHHHHHHHH
Q 005802 29 NQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISACIKSHDL-KQARSLFDSSPHKDLVTYNSMLCGY 97 (676)
Q Consensus 29 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~ll~~~ 97 (676)
..|+..++..|..+....+++.+...++.+|.-.-....-..-+ ..|+++++....+....+.-++.+.
T Consensus 6 s~Ll~vL~~~gs~e~~esvLD~LLs~evlswEDYe~~~~~~~PL~~~aR~LLD~V~~KGe~~C~~fl~a~ 75 (87)
T cd08787 6 SELLEVLCSGGSLEPFESVLDWLLSQEVLSWEDYEGFHVLGQPLSHNARQLLDTVYNKGEWACQKFLAAA 75 (87)
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHhHhhHHHHhhhhhcCCchHHHHHHHHHHHHhcChhHHHHHHHHH
Confidence 45777788888888888888887776666666554443322222 2566666655544444444444443
No 458
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.25 E-value=2.2e+02 Score=30.27 Aligned_cols=21 Identities=5% Similarity=0.082 Sum_probs=11.3
Q ss_pred HHHHHHHhcCChHHHHHHHHh
Q 005802 299 GIVDVYCKCENMNYAESMLLL 319 (676)
Q Consensus 299 ~l~~~~~~~g~~~~a~~~~~~ 319 (676)
.|+.+|...|++-.+.++++.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s 53 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKS 53 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHH
Confidence 455555555555555544443
No 459
>PHA02875 ankyrin repeat protein; Provisional
Probab=36.09 E-value=4.8e+02 Score=26.47 Aligned_cols=38 Identities=5% Similarity=-0.030 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCCCCc--hhhHHHHHhhhccchHHHHHhhh
Q 005802 147 LHAFMVKTSNDASGF--AVSSLIDMYSKCRCYEEACRVFE 184 (676)
Q Consensus 147 ~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 184 (676)
+++.+.+.|..|+.. .-.+.++..+..|+.+-+..+++
T Consensus 117 iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 117 IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 344444455544332 11233444445555554444443
No 460
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.09 E-value=56 Score=35.66 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=21.9
Q ss_pred hcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 005802 541 RANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKL 587 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 587 (676)
.+|+++.|++.-.+. .++.+|..|+.....+|+.+-|+..|++.
T Consensus 655 e~gnle~ale~akkl---dd~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKL---DDKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 445555555544443 24445555555555555555555554443
No 461
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.81 E-value=75 Score=30.10 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAIL 500 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 500 (676)
-|+.-|....+.||+++|+.++++.++.|+.--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46678888888899999999999998888776566655443
No 462
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.81 E-value=4.9e+02 Score=26.52 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=29.9
Q ss_pred HHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhh
Q 005802 359 WTALFSGYVK---AQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQ 405 (676)
Q Consensus 359 ~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 405 (676)
+..+++++.+ .++.+.|+.++..| ...|..|....-..+..++...
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~-l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARM-LEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHhh
Confidence 3444444444 47899999999998 6778777766555555544333
No 463
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=35.78 E-value=55 Score=22.50 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=19.3
Q ss_pred hCCCchHHHHHhccCCC----CCcchHHHHHHH-----HHhcCChHHHHHHh
Q 005802 37 KHNLLRESRKLFDEMPE----RNVFSWNTIISA-----CIKSHDLKQARSLF 79 (676)
Q Consensus 37 ~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~-----~~~~g~~~~A~~~~ 79 (676)
..|++=+|-++++.+-. +....+..+|.. ..+.|+...|.++|
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 45555555555554321 122233333332 24556666666553
No 464
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=35.74 E-value=3.1e+02 Score=24.17 Aligned_cols=175 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHHHhcCCChhHHHHHHHHhHhc------cCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCC
Q 005802 85 KDLVTYNSMLCGYINAEGYEADALKLFIEMQSA------DEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDA 158 (676)
Q Consensus 85 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 158 (676)
.+...++.++..+.+..-.. .-++.+-.|..+ ..+-..|......-+..|-..||+.+.
T Consensus 6 l~~Eh~~yiiklL~qlq~s~-qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~kl-------------- 70 (233)
T PF14669_consen 6 LDPEHFNYIIKLLYQLQASK-QEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKL-------------- 70 (233)
T ss_pred CCHHHHHHHHHHHHhhcCch-hhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHH--------------
Q ss_pred CCchhhHHHHHhhhccchHH-----HHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHH-hhCCCCCCeeeHHHHHH
Q 005802 159 SGFAVSSLIDMYSKCRCYEE-----ACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTF-WRQPELNDAVSWNTLIS 232 (676)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~-----A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~li~ 232 (676)
+..|..+-.++-+.++++. |..+..+... .....+-.+.+.-++.-.-+++-+.+ -+++ -+++.
T Consensus 71 -g~ly~nv~~gce~~~dlq~~~~~va~~Ltkd~Kd-k~~vPFceFAetV~k~~q~~e~dK~~LGRiG--------iS~m~ 140 (233)
T PF14669_consen 71 -GNLYINVKMGCEKFADLQRFCACVAEALTKDSKD-KPGVPFCEFAETVCKDPQNDEVDKTLLGRIG--------ISLMY 140 (233)
T ss_pred -hhHHhhHHhhcCCHHHHHHHHHHHHHHHHhcccc-cCCCCHHHHHHHHhcCCccchhhhhhhhHHH--------HHHHH
Q ss_pred HHHhcCChhHHHHHHHHHHh--------------CCCCCcHhHHHHHHHHHhCCCChHHHHHHHHH
Q 005802 233 GYVQNGDAEEGLKLFVRMGE--------------NGVRWNEHTFASALSACCGLRNVKCAKEIHSW 284 (676)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~--------------~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 284 (676)
.|-+.-+|.+..++++.|.+ .+..+.-...+.....+.++|.++.|..++++
T Consensus 141 ~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 141 SYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 465
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.69 E-value=2.4e+02 Score=22.86 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=30.1
Q ss_pred HHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHh
Q 005802 511 MGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKS 554 (676)
Q Consensus 511 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 554 (676)
.+.++|+.|..+ |+--. ...|......+.+.|++++|.++++.
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 777777777665 66555 66677777777777888887777754
No 466
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.09 E-value=2.4e+02 Score=28.05 Aligned_cols=65 Identities=14% Similarity=0.022 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC------CccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 560 DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN------KARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.....+.++..|...+.++.|..+..+.. .|.. +....-++.+..-+++|..|.+.+-....+.+
T Consensus 208 qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 208 QAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 34566778888999999999999988775 3432 23456778888889999999999887776555
No 467
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=33.54 E-value=4.4e+02 Score=25.35 Aligned_cols=168 Identities=14% Similarity=0.233 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 005802 412 KEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP 491 (676)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 491 (676)
..+++.+...++-++.......++.+.+.+..+-+..++..+.-.... =+++. . +-.+.+.-++++.+. +.|
T Consensus 20 fPLlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~-p~a~~----e--kr~~Vla~lkeLe~e-v~p 91 (432)
T KOG2758|consen 20 FPLLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDM-PNALV----E--KRTEVLAELKELEEE-VAP 91 (432)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccc-hHHHH----H--HHHHHHHHHHHHHHH-HHH
Confidence 345555666666677777777777777888888888887776311110 01111 0 112222223333221 111
Q ss_pred CHhHH--HHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHH---HhCCCCCcHHHHH
Q 005802 492 DAVTF--VAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFM---KSIPTEEDAVILG 565 (676)
Q Consensus 492 ~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~~~~~~~~ 565 (676)
-...+ --++.... .-.+....++.+.+.+++.|+ ..+.-.+......+|++..|-.++ .....+|+....+
T Consensus 92 iv~~le~Pd~~~~~~---~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~ls 168 (432)
T KOG2758|consen 92 IVKVLENPDLIAALR---SDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLS 168 (432)
T ss_pred HHHHHcCHHHHHHHH---hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHH
Confidence 10000 00111111 122236778888888899999 777777888888999999887764 3344556654433
Q ss_pred HHHH---HHHHhCCHhHHHHHHHHHHcc
Q 005802 566 SFLN---VCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 566 ~l~~---~~~~~~~~~~a~~~~~~~~~~ 590 (676)
.+-+ +-.-.-+++.|.+-+-++.+.
T Consensus 169 alwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 169 ALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3332 223456889998888887776
No 468
>PRK09462 fur ferric uptake regulator; Provisional
Probab=33.01 E-value=2.9e+02 Score=23.13 Aligned_cols=61 Identities=7% Similarity=0.042 Sum_probs=35.5
Q ss_pred HHHhCCCCCcHhHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 005802 249 RMGENGVRWNEHTFASALSACCG-LRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENM 310 (676)
Q Consensus 249 ~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 310 (676)
.+.+.|++++..-.. ++..+.. .+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 7 ~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345567666554433 3333333 345667788888887777666666555555666665543
No 469
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.73 E-value=2.2e+02 Score=23.79 Aligned_cols=63 Identities=11% Similarity=0.025 Sum_probs=41.4
Q ss_pred HHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCC
Q 005802 210 MALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLR 273 (676)
Q Consensus 210 ~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 273 (676)
++.+.+.+.+ ..-+.--..++..+.+.++.-.|.++|+.+.+.+...+..|.-..|+.+...|
T Consensus 7 ~~~~~lk~~g-lr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAG-LRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcC-CCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444444443 22333456778888888888999999999999877666666555555555444
No 470
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=32.50 E-value=6.6e+02 Score=27.00 Aligned_cols=26 Identities=12% Similarity=-0.001 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHhhCC
Q 005802 194 SKNAMVAACCREGEMEMALKTFWRQP 219 (676)
Q Consensus 194 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 219 (676)
.|-..+..+.-.|.++.|.+++....
T Consensus 150 ~FW~~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 150 DFWDYVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH-TTT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 34446777777788888888885554
No 471
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=32.18 E-value=8.4e+02 Score=28.13 Aligned_cols=255 Identities=11% Similarity=-0.015 Sum_probs=142.7
Q ss_pred HHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhH
Q 005802 315 SMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALI 394 (676)
Q Consensus 315 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 394 (676)
.+...+..+++..-..-+..+.+.+..+....+...+.+++...-...+.++.+.+........+..++.. +|...
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~----~d~~V 700 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS----PDPVV 700 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC----CCHHH
Confidence 33444445555555555666666555443344445555555555445555554443221122233333121 55555
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCCh
Q 005802 395 LVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHE 474 (676)
Q Consensus 395 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 474 (676)
-...+.++...+... ...+.. .. -.++..+-...+.++.+.+..+. +......++...-...+.++...+..
T Consensus 701 R~~A~~aL~~~~~~~-~~~l~~-~L---~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 701 RAAALDVLRALRAGD-AALFAA-AL---GDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHHHHHhhccCC-HHHHHH-Hh---cCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccc
Confidence 555555555443211 112222 21 14566666666666666554432 33334456666666677777776654
Q ss_pred hH-HHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 005802 475 EK-AILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMK 553 (676)
Q Consensus 475 ~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 553 (676)
+. +...+..+.. .+|...-...+.++...|....+...+..+.. .++..+-...+.++.+.+. +++...+.
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 32 3455555554 35667777788888888876655444444433 2566666667777877765 45666666
Q ss_pred hCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHc
Q 005802 554 SIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLR 589 (676)
Q Consensus 554 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 589 (676)
.+...|+..+....+.++...+....+...+..+.+
T Consensus 845 ~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666678888888888887775444567777776665
No 472
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=32.12 E-value=4e+02 Score=24.40 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC----------------CCCcchHHHHH
Q 005802 402 CALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI----------------ERDLVLYNVMI 465 (676)
Q Consensus 402 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------~~~~~~~~~l~ 465 (676)
|.+..+.+--.++.+-....+++-+..-..+++ +...|+...|..-++.-. +|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 005802 466 ACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAI 499 (676)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 499 (676)
..|.. +++++|.+.+.++-+.|+.|....-+.+
T Consensus 247 ~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 247 QACLK-RNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred HHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 473
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=31.99 E-value=1.3e+02 Score=26.75 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHH-HHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCE
Q 005802 562 VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLA-NVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHE 640 (676)
Q Consensus 562 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (676)
..+..++..|...||++.|-++|--++...+-|....-.+| .++.+.+.-....++++.|...-...............
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~ 121 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcc
Q ss_pred EEEEEeCCCCC
Q 005802 641 IHIFTVGDVSH 651 (676)
Q Consensus 641 ~~~~~~~~~~~ 651 (676)
...+-.|.+.|
T Consensus 122 ~pvfrsGs~t~ 132 (199)
T PF04090_consen 122 APVFRSGSRTH 132 (199)
T ss_pred cccccCCCccc
No 474
>PRK09857 putative transposase; Provisional
Probab=31.53 E-value=2.5e+02 Score=26.87 Aligned_cols=63 Identities=14% Similarity=0.056 Sum_probs=46.8
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNR 628 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 628 (676)
.+++.....++.++-.++++.+.+..|.......+++.-+.+.|.-++++++.++|...|+..
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 344433456677667777777766666666677788888888888888999999999888753
No 475
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.51 E-value=3.9e+02 Score=25.61 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=56.7
Q ss_pred HHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHh----------cCChHHHHHHh
Q 005802 10 LICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISACIK----------SHDLKQARSLF 79 (676)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~----------~g~~~~A~~~~ 79 (676)
.++++.+.+.++.|.-+++.-+.-.+.+.=.+.++..+++.+.. |..-|..|+..||. .|++..-.+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-D~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-DPQRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-ChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 57888899999999999999999888888899999999998876 22226667776664 36666666666
Q ss_pred ccCCCCC
Q 005802 80 DSSPHKD 86 (676)
Q Consensus 80 ~~~~~~~ 86 (676)
..-+.-|
T Consensus 342 Q~yp~td 348 (370)
T KOG4567|consen 342 QNYPTTD 348 (370)
T ss_pred hcCCCCC
Confidence 5544333
No 476
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=31.44 E-value=3.6e+02 Score=27.08 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=16.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC
Q 005802 534 CMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 534 ~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
.|+.+|.+.++.+-|+.-..+-.
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhh
Confidence 46677888888888876655544
No 477
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.30 E-value=1.9e+02 Score=25.00 Aligned_cols=38 Identities=8% Similarity=-0.003 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 005802 273 RNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENM 310 (676)
Q Consensus 273 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 310 (676)
++.-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 33445555555555555444444444444455554444
No 478
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=31.21 E-value=5.8e+02 Score=25.94 Aligned_cols=58 Identities=16% Similarity=0.277 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005802 431 STLVDMYSKCGNMTYAEIIFQNFIER---DLVLYNVMIACYAHHGHEEKAILLFEEMLEKG 488 (676)
Q Consensus 431 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 488 (676)
..|+.-|...|+..+|...+.++.-| ..+.+.+++.+.-+.|+....+.+++.....|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34666677777777777777776554 34566677777777777666666666665544
No 479
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=31.20 E-value=72 Score=23.59 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=16.0
Q ss_pred hcCChHHHHHHhccCCCCCcccHHHHHHHHHhcC
Q 005802 68 KSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAE 101 (676)
Q Consensus 68 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 101 (676)
...+.+.|.++++.++.....+|.....++-..|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3344444555555444444444444444444433
No 480
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.14 E-value=8.3e+02 Score=27.74 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHH
Q 005802 358 VWTALFSGYVKAQNCEALFDLLSEF 382 (676)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m 382 (676)
.|..|+..|...|+.++|+++|.+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l 530 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDL 530 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHH
Confidence 4778888888888888888888876
No 481
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=31.07 E-value=4.5e+02 Score=24.62 Aligned_cols=90 Identities=10% Similarity=0.043 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHh-HHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 545 LEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAE-LAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 545 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
+.+-++++.++. .+.+-..|..=-......|+.. +-+++.+.++..+..+-.+|.+--+++..-+.|++-+.+-.+|
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L 173 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL 173 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555566666665 4456666655444455566766 7788889999888888888999999999999999999999999
Q ss_pred HhCCCcccCceeE
Q 005802 622 RGMKGNRFAGCSW 634 (676)
Q Consensus 622 ~~~~~~~~~~~~~ 634 (676)
.+..+....+...
T Consensus 174 le~Di~NNSAWN~ 186 (318)
T KOG0530|consen 174 LEEDIRNNSAWNQ 186 (318)
T ss_pred HHHhhhccchhhe
Confidence 9988876665443
No 482
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=30.91 E-value=73 Score=31.41 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCC------------hhHHHHHHHHHHhCCCccc
Q 005802 577 AELAGEAEEKLLRLEGNNKARYVQLANVYAAEGN------------WAEMGRIRKQMRGMKGNRF 629 (676)
Q Consensus 577 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~ 629 (676)
+..|+.+++++.. .++|.+|..++.++...|| |.+|.++++++...+.++.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~GKy 396 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNGKY 396 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccccch
Confidence 4566777777764 4556778877777777664 6688888888887766553
No 483
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.48 E-value=8.2e+02 Score=27.46 Aligned_cols=89 Identities=7% Similarity=-0.001 Sum_probs=45.5
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHH
Q 005802 300 IVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLL 379 (676)
Q Consensus 300 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 379 (676)
+-..|...|+++.|.++-+.-+..-...+..-...|...+.+..|-+++.++. ..+..+.--+...++.+.-..++
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~----~~FEEVaLKFl~~~~~~~L~~~L 439 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL----SSFEEVALKFLEINQERALRTFL 439 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhHHHHHHHHHhcCCHHHHHHHH
Confidence 44566677777777755443311111223333445666677777777777763 33444444455555555333333
Q ss_pred HHHHHcCCCCCCHhH
Q 005802 380 SEFVTKEGVVTDALI 394 (676)
Q Consensus 380 ~~m~~~~~~~p~~~~ 394 (676)
.+ +...++|...+
T Consensus 440 ~K--KL~~lt~~dk~ 452 (911)
T KOG2034|consen 440 DK--KLDRLTPEDKT 452 (911)
T ss_pred HH--HHhhCChHHHH
Confidence 33 44445555444
No 484
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.44 E-value=4.1e+02 Score=29.64 Aligned_cols=161 Identities=12% Similarity=0.034 Sum_probs=93.4
Q ss_pred chhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCCh
Q 005802 161 FAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDA 240 (676)
Q Consensus 161 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 240 (676)
..-.++|..+-+.|..+-|+.+.+.-..+ ...+..+|+++.|++.-..+. +..+|..|.....+.|+.
T Consensus 621 LvGqaiIaYLqKkgypeiAL~FVkD~~tR---------F~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~ 688 (1202)
T KOG0292|consen 621 LVGQAIIAYLQKKGYPEIALHFVKDERTR---------FELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNH 688 (1202)
T ss_pred cccHHHHHHHHhcCCcceeeeeecCcchh---------eeeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcch
Confidence 34456777777888888888777542221 233456889999988877766 567899999999999999
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhc
Q 005802 241 EEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLK 320 (676)
Q Consensus 241 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 320 (676)
+-|...|+..+.. .-|--.|.-.|+.++-.++...+...+ |... ....-.-.|++++-..++...
T Consensus 689 ~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL~Km~~iae~r~---D~~~---~~qnalYl~dv~ervkIl~n~ 753 (1202)
T KOG0292|consen 689 QIAEMCYQRTKNF---------EKLSFLYLITGNLEKLSKMMKIAEIRN---DATG---QFQNALYLGDVKERVKILENG 753 (1202)
T ss_pred HHHHHHHHHhhhh---------hheeEEEEEeCCHHHHHHHHHHHHhhh---hhHH---HHHHHHHhccHHHHHHHHHhc
Confidence 9998888876652 122223445677776665555443322 1111 011111134444444444443
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHhccCC
Q 005802 321 GVRNSFSISSMIVGYSLQGNMEEARRHFDSLTE 353 (676)
Q Consensus 321 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (676)
...+..- ......|.-++|.++.++...
T Consensus 754 g~~~lay-----lta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 754 GQLPLAY-----LTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred CcccHHH-----HHHhhcCcHHHHHHHHHhhcc
Confidence 3322111 112335666777777776653
No 485
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=30.17 E-value=1.4e+02 Score=22.51 Aligned_cols=33 Identities=6% Similarity=0.158 Sum_probs=21.7
Q ss_pred CCHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 005802 339 GNMEEARRHFDSLTEKNVVVWTALFSGYVKAQN 371 (676)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (676)
.+.+++.++++.++.+++.+|..+..++...+.
T Consensus 48 t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 48 TSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 345555577777777777777777777755443
No 486
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=30.09 E-value=1.1e+02 Score=21.22 Aligned_cols=49 Identities=20% Similarity=0.250 Sum_probs=27.3
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc
Q 005802 456 RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRH 505 (676)
Q Consensus 456 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 505 (676)
+....++.++..++...-.++++..+.+....|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3444566666666666666666667776666663 344455444444443
No 487
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=30.02 E-value=5.3e+02 Score=25.15 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=70.6
Q ss_pred HHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh---cCChhHHHHHHHHH
Q 005802 547 KAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA---EGNWAEMGRIRKQM 621 (676)
Q Consensus 547 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~ 621 (676)
.-+.+++++. .+.+...+..++..+.+..+.+...+-+++++..+|.++..|...+..... .-.+++...++.+.
T Consensus 49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 3445555544 344556677777788888888888888999998899888888877766555 23566777766665
Q ss_pred HhCCCcccCceeEEEEcCEEEEEEeCCCCCCCh----HHHHHHHHHHHHHHHhcCCC
Q 005802 622 RGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKT----NAIYSVLAIFTGELYEIAGA 674 (676)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 674 (676)
.+.-.....+. ...|+.. ..+...+-++..-+.++||.
T Consensus 129 l~~L~~~~~~~---------------~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~ 170 (321)
T PF08424_consen 129 LRALSRRRSGR---------------MTSHPDLPELEEFMLYVFLRLCRFLRQAGYT 170 (321)
T ss_pred HHHHHHhhccc---------------cccccchhhHHHHHHHHHHHHHHHHHHCCch
Confidence 54321111110 1223332 33334566677778888874
No 488
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.00 E-value=1.5e+02 Score=27.52 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=25.5
Q ss_pred HHHHhhccCcHHHHHHHHHHchhhcC----CCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 005802 499 ILSAFRHCGSVEMGEKYFNSMTADYK----ISPETDHYACMIDLYGRANQLEKAIEF 551 (676)
Q Consensus 499 ll~~~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~ 551 (676)
+..-|...|++++|..+|+.+...+. ..+...+...+..++.+.|+.++.+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34455666666666666666533221 112233333444444455555544443
No 489
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=29.79 E-value=5.7e+02 Score=25.46 Aligned_cols=173 Identities=14% Similarity=0.077 Sum_probs=91.9
Q ss_pred hcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHH
Q 005802 439 KCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNS 518 (676)
Q Consensus 439 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 518 (676)
...+.+.-..+++. -.-.+.++..+...+.+.|+...|.+++++..-.--..-...|..+.. -...|..
T Consensus 22 ~~~Dp~~l~~ll~~-~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~-~~~~g~~--------- 90 (360)
T PF04910_consen 22 QSHDPNALINLLQK-NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS-NLTSGNC--------- 90 (360)
T ss_pred HccCHHHHHHHHHH-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc-ccccCcc---------
Confidence 34455555555522 122455666677778888888888888777652100000000100000 0001100
Q ss_pred chhhcCCCCCHHHHHHH---HHHHhhcCCHHHHHHHHHhCC--CCC-cHHHHHHHHHHH-HHhCCHhHHHHHHHHHHccc
Q 005802 519 MTADYKISPETDHYACM---IDLYGRANQLEKAIEFMKSIP--TEE-DAVILGSFLNVC-RLNRNAELAGEAEEKLLRLE 591 (676)
Q Consensus 519 ~~~~~~~~p~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~ 591 (676)
+-.+...-|...|.++ +..+.+.|-+..|+++.+-+. .+. |+......+..| .+.++++--+++++......
T Consensus 91 -rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~ 169 (360)
T PF04910_consen 91 -RLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKC 169 (360)
T ss_pred -ccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhh
Confidence 0011112234444433 556777888888888776665 233 566555666644 46677777777777655421
Q ss_pred C-----CCCccHHHHHHHHHhcCCh---------------hHHHHHHHHHHh
Q 005802 592 G-----NNKARYVQLANVYAAEGNW---------------AEMGRIRKQMRG 623 (676)
Q Consensus 592 p-----~~~~~~~~l~~~~~~~g~~---------------~~A~~~~~~~~~ 623 (676)
. .-|..-...+-++...++- ++|.+.+++...
T Consensus 170 ~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 170 YRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred hhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHH
Confidence 1 1245556666677777776 778877776654
No 490
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=29.76 E-value=1.9e+02 Score=19.88 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=27.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHh-----CCCChHHHHHH
Q 005802 234 YVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACC-----GLRNVKCAKEI 281 (676)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-----~~~~~~~a~~~ 281 (676)
+...|++-+|-++++.+=...-.|....+..+|..+. +.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4457788888888887754333344455555555432 45666665544
No 491
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.70 E-value=2.4e+02 Score=24.37 Aligned_cols=60 Identities=3% Similarity=0.031 Sum_probs=29.0
Q ss_pred HHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCH
Q 005802 484 MLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQL 545 (676)
Q Consensus 484 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 545 (676)
+.+.|++++..-. .++..+...+..-.|.++++.+.+. +..++..|.-.-++.+.+.|-.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCE
Confidence 3445555554332 2333333334455666666666554 4444544433345555555543
No 492
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=29.36 E-value=61 Score=26.36 Aligned_cols=34 Identities=32% Similarity=0.518 Sum_probs=25.9
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAF 503 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 503 (676)
....|.-.+|..+|.+|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34567778899999999999988875 45666543
No 493
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.33 E-value=6.5e+02 Score=25.98 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=40.6
Q ss_pred HHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCc
Q 005802 568 LNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAG 631 (676)
Q Consensus 568 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 631 (676)
+.++....+...+.+-.+...-...+++.....-...+.-.|++..|.+++-. .++.+.+|
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~---sni~~~~g 273 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV---SNIHKEAG 273 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh---cccccccC
Confidence 34555566666666666666555556666666777888999999999988753 44544444
No 494
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.87 E-value=2.5e+02 Score=20.92 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 005802 389 VTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNF 453 (676)
Q Consensus 389 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 453 (676)
.|....|..-+........-+. ++|+.....|+..|+.+|..+++...-+=-++...++++.|
T Consensus 7 ~~~~~~~k~~~~rk~~Ls~eE~--EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 7 SPTAQVYKYSLRRKKVLSAEEV--ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred CChHHHHHHHHHHHhccCHHHH--HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
No 495
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=28.87 E-value=5.4e+02 Score=25.10 Aligned_cols=57 Identities=11% Similarity=0.198 Sum_probs=29.8
Q ss_pred HHHHhhccCcHHHHHHHHHHchhhcCC--CCCHHH--HHHHHHHHhhcCCHHHHHHHHHhC
Q 005802 499 ILSAFRHCGSVEMGEKYFNSMTADYKI--SPETDH--YACMIDLYGRANQLEKAIEFMKSI 555 (676)
Q Consensus 499 ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~ 555 (676)
++....+.++.++|.++++++..+... .|+... ....+.++...|+..++.+.+.+.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~ 141 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDL 141 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 333444555777777777776543221 233322 233445555666666666655443
No 496
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=28.17 E-value=4e+02 Score=31.12 Aligned_cols=155 Identities=10% Similarity=-0.013 Sum_probs=96.2
Q ss_pred HHHHcCChhHHHH------HHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHch---hh-cCCC-CC-HHHHHH
Q 005802 467 CYAHHGHEEKAIL------LFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMT---AD-YKIS-PE-TDHYAC 534 (676)
Q Consensus 467 ~~~~~~~~~~A~~------~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~-~~~~-p~-~~~~~~ 534 (676)
.....|.+.+|.+ ++......--.+....|..+-..+.+.|+.++|...-.... ++ .|.. |+ ...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444566665655 55532222123345677888888889999999988755431 00 1222 33 555666
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC---------CCCcHH-HHHHHHHHHHHhCCHhHHHHHHHHHHcc-----cCC---CCc
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP---------TEEDAV-ILGSFLNVCRLNRNAELAGEAEEKLLRL-----EGN---NKA 596 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~---~~~ 596 (676)
+.......++...|+..+.+.. ..|... +...+-..+...++++.|.++.+.+... .|. ...
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 7666667777777777765543 223333 3344444455668899999999988876 222 344
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 597 RYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
.+..++.++...|++..|....+.-
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 6778888888888888877665544
No 497
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.41 E-value=20 Score=34.21 Aligned_cols=67 Identities=12% Similarity=-0.042 Sum_probs=57.7
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEE
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYV 637 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 637 (676)
....|.++.|++.+-.+++++|..+.+|..-+.++.+.+++..|++-+....+.+.....++-|...
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~ 190 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGY 190 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhH
Confidence 3466789999999999999999999999999999999999999999999998877766665555433
No 498
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=27.39 E-value=47 Score=26.96 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=25.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 005802 234 YVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSA 268 (676)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 268 (676)
....|.-.+|..+|+.|++.|-+||. ++.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34457778899999999999999874 4555544
No 499
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=27.12 E-value=1.7e+02 Score=23.11 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=26.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCC
Q 005802 230 LISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRN 274 (676)
Q Consensus 230 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 274 (676)
++..+...+..-.|.++++.+.+.+..++..|....|+.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 444555555566677777777766655566665555555554443
No 500
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=27.10 E-value=2.8e+02 Score=28.07 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
++.+-+..+.+.+++..|-.+.++++++.|... ..++|++++....+
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~--------------~a~qArKil~~~e~ 348 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPSPE--------------VAEQARKILQACER 348 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH--------------HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH--------------HHHHHHHHHHHHhc
Confidence 667777888999999999999999999988532 12356777765543
Done!